BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3016
(305 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|91079430|ref|XP_968120.1| PREDICTED: similar to spliceosome associated protein [Tribolium
castaneum]
gi|270004395|gb|EFA00843.1| hypothetical protein TcasGA2_TC003731 [Tribolium castaneum]
Length = 393
Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/265 (75%), Positives = 213/265 (80%), Gaps = 44/265 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLDDKV+E+L+WELFVQSGP+VNVHMPKDRVT HQGYGF+EFMGEEDADYAI
Sbjct: 12 DATIYVGGLDDKVTESLLWELFVQSGPLVNVHMPKDRVTMMHQGYGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKGFAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDPDTGNSKGFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDASI+AM+GQYLCNRPISVSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLFAD
Sbjct: 154 ASDASIEAMNGQYLCNRPISVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFAD 213
Query: 274 A------PPPAPLPPPPPPINIMGL 292
A PP L PPPPP+ + G+
Sbjct: 214 APPMGMMPPGMTLAPPPPPVILAGM 238
>gi|347966116|ref|XP_321584.5| AGAP001538-PA [Anopheles gambiae str. PEST]
gi|333470203|gb|EAA00839.5| AGAP001538-PA [Anopheles gambiae str. PEST]
Length = 408
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/244 (77%), Positives = 202/244 (82%), Gaps = 38/244 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLDDKV+ETL+WELFVQSGPVVNVHMPKDRVTQ HQGYGF+EF+GEEDADYAI
Sbjct: 12 DATIYVGGLDDKVTETLLWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFLGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQK+LDVGANIFIGNLD EVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKSLDVGANIFIGNLDLEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNSKGFAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDPETGNSKGFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA++DAM+GQYLCNRPISVSYAFKKDSKG+RHGSAAERLLAAQNPLS ADRPHQLFAD
Sbjct: 154 ASDAAMDAMNGQYLCNRPISVSYAFKKDSKGERHGSAAERLLAAQNPLSHADRPHQLFAD 213
Query: 274 APPP 277
AP P
Sbjct: 214 APAP 217
>gi|170057743|ref|XP_001864617.1| splicing factor 3B subunit 4 [Culex quinquefasciatus]
gi|167877079|gb|EDS40462.1| splicing factor 3B subunit 4 [Culex quinquefasciatus]
Length = 360
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/241 (78%), Positives = 201/241 (83%), Gaps = 38/241 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLDDKVSETL+WE+FVQ+GPVVNVHMPKDRVTQ HQGYGF+EF+GEEDADYAI
Sbjct: 12 DATIYVGGLDDKVSETLLWEMFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNSKGFAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDPETGNSKGFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA++DAM+GQYLCNRPISVSYAFKKDSKG+RHGSAAERLLAAQNPLS ADRPHQLFAD
Sbjct: 154 ASDAAMDAMNGQYLCNRPISVSYAFKKDSKGERHGSAAERLLAAQNPLSHADRPHQLFAD 213
Query: 274 A 274
A
Sbjct: 214 A 214
>gi|157137418|ref|XP_001663981.1| spliceosome associated protein [Aedes aegypti]
gi|108869713|gb|EAT33938.1| AAEL013795-PA [Aedes aegypti]
Length = 362
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/241 (78%), Positives = 201/241 (83%), Gaps = 38/241 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLDDKVSETL+WE+FVQ+GPVVNVHMPKDRVTQ HQGYGF+EF+GEEDADYAI
Sbjct: 12 DATIYVGGLDDKVSETLLWEMFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNSKGFAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDPETGNSKGFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA++DAM+GQYLCNRPISVSYAFKKDSKG+RHGSAAERLLAAQNPLS ADRPHQLFAD
Sbjct: 154 ASDAAMDAMNGQYLCNRPISVSYAFKKDSKGERHGSAAERLLAAQNPLSHADRPHQLFAD 213
Query: 274 A 274
A
Sbjct: 214 A 214
>gi|112983328|ref|NP_001037646.1| spliceosomal protein on the X [Bombyx mori]
gi|109706833|gb|ABG43003.1| spliceosomal protein on the X [Bombyx mori]
Length = 342
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/243 (76%), Positives = 201/243 (82%), Gaps = 38/243 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLDD+V+E+L+WELFVQSGPVVNVHMPKDRVTQTHQGYGF+EFMGEEDADYAI
Sbjct: 12 DATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K+MNMIKLYGKP+RVNKAS+HQKNLDVGAN+FIGNLDPEVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KVMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+MRDP+TGNSK FAFIN+ASFE
Sbjct: 132 --------------------------------------VMRDPETGNSKAFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+ QYLCNRPISVSYAFKKD KG+RHGSAAERLLAAQNPLS ADRPHQLFAD
Sbjct: 154 ASDAAIEAMNNQYLCNRPISVSYAFKKDVKGERHGSAAERLLAAQNPLSHADRPHQLFAD 213
Query: 274 APP 276
APP
Sbjct: 214 APP 216
>gi|312375219|gb|EFR22634.1| hypothetical protein AND_14423 [Anopheles darlingi]
Length = 413
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/249 (76%), Positives = 203/249 (81%), Gaps = 38/249 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLDDK +ETL+WELFVQSGPVVNVHMPKDRVTQ HQGYGF+EF+GEEDADYAI
Sbjct: 12 DATIYVGGLDDKATETLLWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFLGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQK+LDVGANIFIGNLD EVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKSLDVGANIFIGNLDLEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNSKGFAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDPETGNSKGFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA++DAM+GQYLCNRPISVSYAFKKDSKG+RHGSAAERLLAAQNPLS ADRPHQLFAD
Sbjct: 154 ASDAAMDAMNGQYLCNRPISVSYAFKKDSKGERHGSAAERLLAAQNPLSHADRPHQLFAD 213
Query: 274 APPPAPLPP 282
AP P + P
Sbjct: 214 APVPPSMHP 222
>gi|307167809|gb|EFN61250.1| Splicing factor 3B subunit 4 [Camponotus floridanus]
Length = 409
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/238 (78%), Positives = 199/238 (83%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLDDKV+E+LMWELFVQSGPVVNVHMPKDRVTQ HQGYGF+EFMGEEDADYAI
Sbjct: 12 DATIYVGGLDDKVTESLMWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNSKGFAFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPETGNSKGFAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDASI+AM+GQYLCNRPISVSYAFK+D+KG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDASIEAMNGQYLCNRPISVSYAFKRDAKGERHGSAAERLLAAQNPLSQADRPHQLF 211
>gi|380011609|ref|XP_003689892.1| PREDICTED: splicing factor 3B subunit 4-like [Apis florea]
Length = 413
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/238 (78%), Positives = 199/238 (83%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLDDKV+E+LMWELFVQSGPVVNVHMPKDRVTQ HQGYGF+EFMGEEDADYAI
Sbjct: 12 DATIYVGGLDDKVTESLMWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNSKGFAFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPETGNSKGFAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDASI+AM+GQYLCNRPISVSYAFK+D+KG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDASIEAMNGQYLCNRPISVSYAFKRDAKGERHGSAAERLLAAQNPLSQADRPHQLF 211
>gi|357614441|gb|EHJ69078.1| spliceosomal protein on the X [Danaus plexippus]
Length = 334
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/243 (75%), Positives = 201/243 (82%), Gaps = 38/243 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLDD+V+E+L+WELFVQ+GPVVNVHMPKDRVTQTHQGYGF+EFMGEEDADYAI
Sbjct: 12 DATIYVGGLDDRVTESLLWELFVQAGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K+MNMIKLYGKP+RVNKAS+HQKNLDVGAN+FIGNLDPEVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KVMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+MRDP+TGNSK FAFIN+ASFE
Sbjct: 132 --------------------------------------VMRDPETGNSKAFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+ QYLCNRPISVSYAFKKD KG+RHGSAAERLLAAQNPLS ADRPHQLFAD
Sbjct: 154 ASDAAIEAMNNQYLCNRPISVSYAFKKDVKGERHGSAAERLLAAQNPLSHADRPHQLFAD 213
Query: 274 APP 276
APP
Sbjct: 214 APP 216
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/260 (46%), Positives = 140/260 (53%), Gaps = 101/260 (38%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A I++G LD V E LL++ F G ++
Sbjct: 8 ERNQD--ATIYVGGLDDRVTESLLWELFVQAGPVVNVHMPKDRVTQTHQGYGFVEFMGEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
K+MNMIKLYGKP+RVNKAS+HQKNLDVGAN+FIGNLDPE+
Sbjct: 66 DADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDP+TGNSK FAFIN+ASFEASDA+I+AM+ QYLCNRPISVSYAFKKD KG+
Sbjct: 126 ILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYAFKKDVKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFADAP------------------------------ 275
RHGSAAERLLAAQNPLS ADRPHQLFADAP
Sbjct: 186 RHGSAAERLLAAQNPLSHADRPHQLFADAPPIMGPLLMAPPPPPTPSPMPPGPPLTSRPP 245
Query: 275 -------------------- 275
Sbjct: 246 LPMAAPPPPPSTMPPPGPPP 265
>gi|350406084|ref|XP_003487648.1| PREDICTED: splicing factor 3B subunit 4-like [Bombus impatiens]
Length = 413
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/238 (78%), Positives = 199/238 (83%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLDDKV+E+LMWELFVQSGPVVNVHMPKDRVTQ HQGYGF+EFMGEEDADYAI
Sbjct: 12 DATIYVGGLDDKVTESLMWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNSKGFAFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPETGNSKGFAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDASI+AM+GQYLCNRPISVSYAFK+D+KG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDASIEAMNGQYLCNRPISVSYAFKRDAKGERHGSAAERLLAAQNPLSQADRPHQLF 211
>gi|48097884|ref|XP_393914.1| PREDICTED: splicing factor 3B subunit 4 [Apis mellifera]
Length = 413
Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/238 (78%), Positives = 199/238 (83%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLDDKV+E+LMWELFVQSGPVVNVHMPKDRVTQ HQGYGF+EFMGEEDADYAI
Sbjct: 12 DATIYVGGLDDKVTESLMWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNSKGFAFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPETGNSKGFAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDASI+AM+GQYLCNRPISVSYAFK+D+KG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDASIEAMNGQYLCNRPISVSYAFKRDAKGERHGSAAERLLAAQNPLSQADRPHQLF 211
>gi|242011768|ref|XP_002426618.1| spliceosome associated protein, putative [Pediculus humanus
corporis]
gi|212510771|gb|EEB13880.1| spliceosome associated protein, putative [Pediculus humanus
corporis]
Length = 691
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/240 (78%), Positives = 200/240 (83%), Gaps = 38/240 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLDDKV+E LMWELFVQSGPVVNVHMPKDRVTQ HQGYGF+EFMGEEDADYAI
Sbjct: 12 DATIYVGGLDDKVTEPLMWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLDPEVDEKLL+DTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLFDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPD+GNSKGFAFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDSGNSKGFAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDASI+AM+GQYLCNRPISVSYAFKKDS+G+RHGSAAERLLAAQNPLSQADRPHQLFAD
Sbjct: 154 ASDASIEAMNGQYLCNRPISVSYAFKKDSRGERHGSAAERLLAAQNPLSQADRPHQLFAD 213
>gi|332028466|gb|EGI68509.1| Splicing factor 3B subunit 4 [Acromyrmex echinatior]
Length = 410
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/238 (78%), Positives = 199/238 (83%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLDDKV+E+LMWELFVQSGPVVNVHMPKDRVTQ HQGYGF+EFMGEEDADYAI
Sbjct: 12 DATIYVGGLDDKVTESLMWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNSKGFAFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPETGNSKGFAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDASI+AM+GQYLCNRPISVSYAFK+D+KG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDASIEAMNGQYLCNRPISVSYAFKRDAKGERHGSAAERLLAAQNPLSQADRPHQLF 211
>gi|383857497|ref|XP_003704241.1| PREDICTED: splicing factor 3B subunit 4-like [Megachile rotundata]
Length = 413
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/238 (78%), Positives = 199/238 (83%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLDDKV+E+LMWELFVQSGPVVNVHMPKDRVTQ HQGYGF+EFMGEEDADYAI
Sbjct: 12 DATIYVGGLDDKVTESLMWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNSKGFAFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPETGNSKGFAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDASI+AM+GQYLCNRPISVSYAFK+D+KG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDASIEAMNGQYLCNRPISVSYAFKRDAKGERHGSAAERLLAAQNPLSQADRPHQLF 211
>gi|260841232|ref|XP_002613832.1| hypothetical protein BRAFLDRAFT_72046 [Branchiostoma floridae]
gi|229299222|gb|EEN69841.1| hypothetical protein BRAFLDRAFT_72046 [Branchiostoma floridae]
Length = 365
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/250 (73%), Positives = 202/250 (80%), Gaps = 38/250 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVTQ HQGYGF+EFM EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEALLWELFLQAGPVVNTHMPKDRVTQAHQGYGFVEFMSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPETGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNRPI++SYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLFAD
Sbjct: 154 ASDAAIEAMNGQYLCNRPITISYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFAD 213
Query: 274 APPPAPLPPP 283
APP PP
Sbjct: 214 APPTPQSNPP 223
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/265 (47%), Positives = 146/265 (55%), Gaps = 105/265 (39%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEALLWELFLQAGPVVNTHMPKDRVTQAHQGYGFVEFMSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDP+TGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI++SYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPETGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITISYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFADA-------PP---------------------- 276
RHGSAAERLLAAQNPLSQADRPHQLFADA PP
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFADAPPTPQSNPPMSSAPPQGGPPPGMPPPGMPPP 245
Query: 276 ------------------------- 276
Sbjct: 246 PPPSGVPPPPMPPPGMGMPHPRGGP 270
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPETGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI ++ A
Sbjct: 157 AAIEAMNGQYLCNRPITISYA 177
>gi|443717173|gb|ELU08367.1| hypothetical protein CAPTEDRAFT_163289 [Capitella teleta]
Length = 412
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/245 (74%), Positives = 201/245 (82%), Gaps = 38/245 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLDDKVSE+++WELF+Q+GPVVNVHMPKDR++Q HQGYGF+EFMGEEDADYAI
Sbjct: 12 DATIYVGGLDDKVSESILWELFLQAGPVVNVHMPKDRISQAHQGYGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+IMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 RIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKGFAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDPDTGNSKGFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
SD++I+AM+GQYLCNR IS+SYAFKKDSKG+RHGSAAERLLA QNPL+Q DRPHQLFAD
Sbjct: 154 TSDSAIEAMNGQYLCNRAISISYAFKKDSKGERHGSAAERLLAQQNPLTQVDRPHQLFAD 213
Query: 274 APPPA 278
AP P+
Sbjct: 214 APTPS 218
>gi|156387980|ref|XP_001634480.1| predicted protein [Nematostella vectensis]
gi|156221563|gb|EDO42417.1| predicted protein [Nematostella vectensis]
Length = 380
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/260 (71%), Positives = 208/260 (80%), Gaps = 41/260 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLD+KVSE L+WELF+QSGPVVNVHMPKDR+TQ HQGYGF+EF+GEEDADYAI
Sbjct: 12 DATIYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K+MNMIK+YGKPIRVNKAS+H KNLDVGAN+FIGNLD EVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KVMNMIKVYGKPIRVNKASAHNKNLDVGANLFIGNLDTEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRD DTGNSKGFAFIN+ASF+
Sbjct: 132 --------------------------------------IMRDSDTGNSKGFAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNRPI+VSYAFKK+SKG+RHGSAAERLLAAQNPL+QADRPHQLFAD
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKESKGERHGSAAERLLAAQNPLAQADRPHQLFAD 213
Query: 274 APP---PAPLPPPPPPINIM 290
APP LPP PP+ ++
Sbjct: 214 APPIQTSTSLPPMIPPVGML 233
>gi|291224886|ref|XP_002732430.1| PREDICTED: splicing factor 3b, subunit 4-like [Saccoglossus
kowalevskii]
Length = 388
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/243 (74%), Positives = 201/243 (82%), Gaps = 38/243 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+QSGPVVN HMPKDRVTQ HQGYGF+EF+GEEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEALLWELFLQSGPVVNTHMPKDRVTQQHQGYGFVEFLGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIK+YGKPIRVNKAS+HQKNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKIYGKPIRVNKASAHQKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP++GNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPESGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNRPI++SYAFKKDSKG+RHGSAAERLLAAQNPLSQ DRPHQLFAD
Sbjct: 154 ASDAAIEAMNGQYLCNRPITISYAFKKDSKGERHGSAAERLLAAQNPLSQMDRPHQLFAD 213
Query: 274 APP 276
APP
Sbjct: 214 APP 216
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D + +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPESGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI ++ A
Sbjct: 157 AAIEAMNGQYLCNRPITISYA 177
>gi|240848881|ref|NP_001155373.1| spliceosome associated protein-like [Acyrthosiphon pisum]
gi|239792048|dbj|BAH72409.1| ACYPI000210 [Acyrthosiphon pisum]
Length = 370
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/243 (76%), Positives = 201/243 (82%), Gaps = 38/243 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLD+KVS+TLMWELFVQ+GPVVNVHMPKDRVTQ+HQGYGF+EF+ E+DADYAI
Sbjct: 12 DATIYVGGLDEKVSDTLMWELFVQAGPVVNVHMPKDRVTQSHQGYGFVEFLAEDDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGAN+FIGNLD EVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANVFIGNLDSEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKGFAFINYASFE
Sbjct: 132 --------------------------------------IMRDPDTGNSKGFAFINYASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQ+LCNR +S+SYAFKKD KG+RHGSAAERLLAAQNPLSQADRPHQLFAD
Sbjct: 154 ASDAAIEAMNGQHLCNRAVSISYAFKKDVKGERHGSAAERLLAAQNPLSQADRPHQLFAD 213
Query: 274 APP 276
APP
Sbjct: 214 APP 216
>gi|410910988|ref|XP_003968972.1| PREDICTED: splicing factor 3B subunit 4-like [Takifugu rubripes]
Length = 397
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/244 (75%), Positives = 200/244 (81%), Gaps = 38/244 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLFAD
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFAD 213
Query: 274 APPP 277
APPP
Sbjct: 214 APPP 217
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|115686233|ref|XP_784135.2| PREDICTED: splicing factor 3B subunit 4-like [Strongylocentrotus
purpuratus]
Length = 425
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/272 (68%), Positives = 216/272 (79%), Gaps = 42/272 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KV+E L+WELF+Q+GPVVN HMPKDRVTQ+HQGYGF+EFMGEEDADYAI
Sbjct: 12 DATVYVGGLDEKVTEALLWELFLQAGPVVNTHMPKDRVTQSHQGYGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K++NMIKLYGKP+RVNKAS+HQKNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KVLNMIKLYGKPVRVNKASAHQKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRD ++GNSKG+AFIN+ASFE
Sbjct: 132 --------------------------------------IMRDVESGNSKGYAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
A+DA+I+AM+GQYLCNR I++S+AFKKDS+G+RHGSAAERLLAAQNPLSQADRPHQLFAD
Sbjct: 154 AADAAIEAMNGQYLCNRAITISFAFKKDSRGERHGSAAERLLAAQNPLSQADRPHQLFAD 213
Query: 274 APPPAPLPPPPPPINIMG-LPPPPPSGLRASA 304
APP A ++ +G PPPPPSG A++
Sbjct: 214 APPTAQA---NGVVSSLGQAPPPPPSGGTATS 242
>gi|391337396|ref|XP_003743055.1| PREDICTED: uncharacterized protein LOC100908642 [Metaseiulus
occidentalis]
Length = 543
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/243 (74%), Positives = 199/243 (81%), Gaps = 38/243 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLD+KVS+ L+WELFVQ+GP+V+VHMPKDR+T HQGYGF+EF+GEEDADYAI
Sbjct: 12 DATIYVGGLDEKVSDNLLWELFVQAGPIVSVHMPKDRITGLHQGYGFVEFLGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K+MNMIKLYGKP+RVNKAS+HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KVMNMIKLYGKPVRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNSKGFAF+N+ASFE
Sbjct: 132 --------------------------------------IMRDPETGNSKGFAFVNFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+IDAM+GQYLCNR IS+SYAFKKDSKG+RHGSAAERLLAAQNPLS DRPHQLFAD
Sbjct: 154 ASDAAIDAMNGQYLCNRAISISYAFKKDSKGERHGSAAERLLAAQNPLSIGDRPHQLFAD 213
Query: 274 APP 276
APP
Sbjct: 214 APP 216
>gi|195133204|ref|XP_002011029.1| GI16317 [Drosophila mojavensis]
gi|193907004|gb|EDW05871.1| GI16317 [Drosophila mojavensis]
Length = 340
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/242 (76%), Positives = 196/242 (80%), Gaps = 38/242 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIY GGLDDKVSETL+WELFVQ+GPVVNVHMPKDRVTQ HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLD EVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TG SKGFAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDPETGKSKGFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA++DAM+GQYLCNRPISVSYAFKKD KG+RHGSAAERLLAAQNP + ADRPHQLFAD
Sbjct: 154 ASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNPSAHADRPHQLFAD 213
Query: 274 AP 275
AP
Sbjct: 214 AP 215
>gi|195399065|ref|XP_002058141.1| GJ15655 [Drosophila virilis]
gi|194150565|gb|EDW66249.1| GJ15655 [Drosophila virilis]
Length = 340
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/242 (76%), Positives = 196/242 (80%), Gaps = 38/242 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIY GGLDDKVSETL+WELFVQ+GPVVNVHMPKDRVTQ HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLD EVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TG SKGFAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDPETGKSKGFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA++DAM+GQYLCNRPISVSYAFKKD KG+RHGSAAERLLAAQNP + ADRPHQLFAD
Sbjct: 154 ASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNPSAHADRPHQLFAD 213
Query: 274 AP 275
AP
Sbjct: 214 AP 215
>gi|195060144|ref|XP_001995761.1| GH17589 [Drosophila grimshawi]
gi|193896547|gb|EDV95413.1| GH17589 [Drosophila grimshawi]
Length = 340
Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/248 (74%), Positives = 198/248 (79%), Gaps = 38/248 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIY GGLDDKVSETL+WELFVQ+GPVVNVHMPKDRVTQ HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLD EVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TG SKGFAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDPETGKSKGFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA++DAM+GQYLCNRPISVSYAFKKD KG+RHGSAAERLLAAQNP + ADRPHQLFAD
Sbjct: 154 ASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNPSAHADRPHQLFAD 213
Query: 274 APPPAPLP 281
AP +P
Sbjct: 214 APVQNMMP 221
>gi|241708466|ref|XP_002403282.1| spliceosome associated protein, putative [Ixodes scapularis]
gi|215505045|gb|EEC14539.1| spliceosome associated protein, putative [Ixodes scapularis]
Length = 408
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/263 (71%), Positives = 209/263 (79%), Gaps = 45/263 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLD+KVS+T++WELFVQ+GPVVNVHMPKDRVT HQGYGF+EF+GEEDADYAI
Sbjct: 12 DATIYVGGLDEKVSDTILWELFVQAGPVVNVHMPKDRVTGHHQGYGFVEFLGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASFE
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNR I++SYAFKKDSKG+RHGSAAERLLAAQNPL+ +DRPHQLFAD
Sbjct: 154 ASDAAIEAMNGQYLCNRAITISYAFKKDSKGERHGSAAERLLAAQNPLAHSDRPHQLFAD 213
Query: 274 A-------PPPAPLPPPPPPINI 289
A PPP PPPP+N+
Sbjct: 214 APPVGGLPPPPVVGLAPPPPLNL 236
>gi|195432797|ref|XP_002064403.1| GK19717 [Drosophila willistoni]
gi|194160488|gb|EDW75389.1| GK19717 [Drosophila willistoni]
Length = 339
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/242 (75%), Positives = 196/242 (80%), Gaps = 38/242 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIY GGLDDKVSETL+WELFVQ+GPVVNVHMPKDRVTQ HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLD EVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+MRDP+TG SKGFAFIN+ASFE
Sbjct: 132 --------------------------------------LMRDPETGKSKGFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA++DAM+GQYLCNRPISVSYAFKKD KG+RHGSAAERLLAAQNP + ADRPHQLFAD
Sbjct: 154 ASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNPSAHADRPHQLFAD 213
Query: 274 AP 275
AP
Sbjct: 214 AP 215
>gi|194762578|ref|XP_001963411.1| GF20385 [Drosophila ananassae]
gi|190629070|gb|EDV44487.1| GF20385 [Drosophila ananassae]
Length = 341
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/248 (74%), Positives = 198/248 (79%), Gaps = 38/248 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIY GGLDDKVSETL+WELFVQ+GPVVNVHMPKDRVTQ HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLD EVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TG SK FAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDPETGKSKSFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA++DAM+GQYLCNRPISVSYAFKKD KG+RHGSAAERLLAAQNP + ADRPHQLFAD
Sbjct: 154 ASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNPSAHADRPHQLFAD 213
Query: 274 APPPAPLP 281
AP + +P
Sbjct: 214 APVQSMMP 221
>gi|321479244|gb|EFX90200.1| hypothetical protein DAPPUDRAFT_40110 [Daphnia pulex]
Length = 268
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/259 (71%), Positives = 204/259 (78%), Gaps = 44/259 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLD+KV+E L+WELFVQ GPVVNVHMPKDR+T HQGYGFIEF+ E+DADYA
Sbjct: 12 DATIYVGGLDEKVTEPLLWELFVQGGPVVNVHMPKDRITLLHQGYGFIEFLSEDDADYAC 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP TGNSKGFAFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPTTGNSKGFAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNRPI++SYAFKKDSKG+RHGSAAERLLAAQNPL+Q DRPHQLFAD
Sbjct: 154 ASDAAIEAMNGQYLCNRPITISYAFKKDSKGERHGSAAERLLAAQNPLAQTDRPHQLFAD 213
Query: 274 APPPAPLPPPPPPINIMGL 292
A PP PP ++ MG+
Sbjct: 214 A------PPIPPQMSNMGM 226
>gi|194896158|ref|XP_001978424.1| GG19577 [Drosophila erecta]
gi|190650073|gb|EDV47351.1| GG19577 [Drosophila erecta]
Length = 339
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/242 (75%), Positives = 195/242 (80%), Gaps = 38/242 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIY GGLDDKVSETL+WELFVQ+GPVVNVHMPKDRVTQ HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLD EVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TG SK FAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDPETGKSKSFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA++DAM+GQYLCNRPISVSYAFKKD KG+RHGSAAERLLAAQNP + ADRPHQLFAD
Sbjct: 154 ASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNPSAHADRPHQLFAD 213
Query: 274 AP 275
AP
Sbjct: 214 AP 215
>gi|148226626|ref|NP_001080100.1| splicing factor 3b, subunit 4, 49kDa [Xenopus laevis]
gi|28374170|gb|AAH45264.1| Spx-prov protein [Xenopus laevis]
Length = 377
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/240 (75%), Positives = 196/240 (81%), Gaps = 38/240 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFINYASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINYASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLFAD
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFAD 213
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI + + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINYASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|195469914|ref|XP_002099881.1| GE16738 [Drosophila yakuba]
gi|194187405|gb|EDX00989.1| GE16738 [Drosophila yakuba]
Length = 339
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/242 (75%), Positives = 195/242 (80%), Gaps = 38/242 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIY GGLDDKVSETL+WELFVQ+GPVVNVHMPKDRVTQ HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLD EVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TG SK FAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDPETGKSKSFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA++DAM+GQYLCNRPISVSYAFKKD KG+RHGSAAERLLAAQNP + ADRPHQLFAD
Sbjct: 154 ASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNPSAHADRPHQLFAD 213
Query: 274 AP 275
AP
Sbjct: 214 AP 215
>gi|148229719|ref|NP_001086794.1| MGC82420 protein [Xenopus laevis]
gi|50604232|gb|AAH77458.1| MGC82420 protein [Xenopus laevis]
Length = 383
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/240 (75%), Positives = 196/240 (81%), Gaps = 38/240 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFINYASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINYASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLFAD
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFAD 213
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI + + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINYASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|17530817|ref|NP_511058.1| spliceosomal protein on the X [Drosophila melanogaster]
gi|7290689|gb|AAF46136.1| spliceosomal protein on the X [Drosophila melanogaster]
gi|68051249|gb|AAY84889.1| RE50839p [Drosophila melanogaster]
gi|220952204|gb|ACL88645.1| Spx-PA [synthetic construct]
Length = 347
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/254 (72%), Positives = 198/254 (77%), Gaps = 38/254 (14%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIY GGLDDKVSETL+WELFVQ+GPVVNVHMPKDRVTQ HQGYGF+EF+ EEDADY I
Sbjct: 12 DATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYGI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLD EVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TG SK FAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDPETGKSKSFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA++DAM+GQYLCNRPISVSYAFKKD KG+RHGSAAERLLAAQNP + ADRPHQLFAD
Sbjct: 154 ASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNPSTHADRPHQLFAD 213
Query: 274 APPPAPLPPPPPPI 287
AP +P P I
Sbjct: 214 APVQTMMPQMPGQI 227
>gi|52694662|ref|NP_705947.3| splicing factor 3B subunit 4 [Danio rerio]
gi|34193906|gb|AAH56532.1| Splicing factor 3b, subunit 4 [Danio rerio]
gi|45768679|gb|AAH67655.1| Splicing factor 3b, subunit 4 [Danio rerio]
gi|94733748|emb|CAK11461.1| splicing factor 3b, subunit 4 [Danio rerio]
Length = 400
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/241 (74%), Positives = 197/241 (81%), Gaps = 38/241 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLFAD
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFAD 213
Query: 274 A 274
A
Sbjct: 214 A 214
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|125982457|ref|XP_001355096.1| GA17684 [Drosophila pseudoobscura pseudoobscura]
gi|54643408|gb|EAL32152.1| GA17684 [Drosophila pseudoobscura pseudoobscura]
Length = 341
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/242 (75%), Positives = 195/242 (80%), Gaps = 38/242 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIY GGLDDKVSE+L+WELFVQ+GPVVNVHMPKDRVTQ HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATIYAGGLDDKVSESLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLD EVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TG SK FAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDPETGKSKSFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA++DAM+GQYLCNRPISVSYAFKKD KG+RHGSAAERLLAAQNP + ADRPHQLFAD
Sbjct: 154 ASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNPSAHADRPHQLFAD 213
Query: 274 AP 275
AP
Sbjct: 214 AP 215
>gi|195174722|ref|XP_002028121.1| GL21313 [Drosophila persimilis]
gi|194115861|gb|EDW37904.1| GL21313 [Drosophila persimilis]
Length = 341
Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/242 (75%), Positives = 195/242 (80%), Gaps = 38/242 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIY GGLDDKVSE+L+WELFVQ+GPVVNVHMPKDRVTQ HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATIYAGGLDDKVSESLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLD EVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TG SK FAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDPETGKSKSFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA++DAM+GQYLCNRPISVSYAFKKD KG+RHGSAAERLLAAQNP + ADRPHQLFAD
Sbjct: 154 ASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNPSAHADRPHQLFAD 213
Query: 274 AP 275
AP
Sbjct: 214 AP 215
>gi|195340414|ref|XP_002036808.1| GM12470 [Drosophila sechellia]
gi|194130924|gb|EDW52967.1| GM12470 [Drosophila sechellia]
Length = 299
Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/248 (73%), Positives = 195/248 (78%), Gaps = 38/248 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIY GGLDDKVSETL+WELFVQ+GPVVNVHMPKDRVTQ HQGYGF+EF+ EEDADY I
Sbjct: 12 DATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYGI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLD EVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TG SK FAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDPETGKSKSFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA++DAM+GQYLCNRPISVSYAFKKD KG+RHGSAAERLLAAQNP ADRPHQLFAD
Sbjct: 154 ASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNPSIHADRPHQLFAD 213
Query: 274 APPPAPLP 281
AP +P
Sbjct: 214 APVQNMMP 221
>gi|432882405|ref|XP_004074014.1| PREDICTED: splicing factor 3B subunit 4-like [Oryzias latipes]
Length = 344
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 180/241 (74%), Positives = 197/241 (81%), Gaps = 38/241 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLFAD
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFAD 213
Query: 274 A 274
A
Sbjct: 214 A 214
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|348513245|ref|XP_003444153.1| PREDICTED: splicing factor 3B subunit 4-like [Oreochromis
niloticus]
Length = 401
Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 179/240 (74%), Positives = 196/240 (81%), Gaps = 38/240 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLFAD
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFAD 213
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|45360881|ref|NP_989116.1| splicing factor 3b, subunit 4, 49kDa [Xenopus (Silurana)
tropicalis]
gi|38512254|gb|AAH61357.1| splicing factor 3b, subunit 4, 49kDa [Xenopus (Silurana)
tropicalis]
gi|89268695|emb|CAJ83013.1| splicing factor 3b, subunit 4, 49kDa [Xenopus (Silurana)
tropicalis]
Length = 388
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 179/240 (74%), Positives = 196/240 (81%), Gaps = 38/240 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLFAD
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFAD 213
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|339244657|ref|XP_003378254.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316972855|gb|EFV56501.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 432
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 176/242 (72%), Positives = 199/242 (82%), Gaps = 38/242 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLD++VSET++WELFVQ+GP+V+VHMPKDR++ THQGYGF+EFMGEEDADYAI
Sbjct: 12 DATIYVGGLDERVSETILWELFVQAGPIVSVHMPKDRISSTHQGYGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLD+GAN+FIGNLDPEVDEKLLYDTFSAFGV+LQ PK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDIGANVFIGNLDPEVDEKLLYDTFSAFGVLLQVPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNSKGFAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDPETGNSKGFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNRPIS SYAFKKD+KG+RHG+AAERLLAAQNP+ ADRPHQLFAD
Sbjct: 154 ASDAAIEAMNGQYLCNRPISASYAFKKDAKGERHGTAAERLLAAQNPIFPADRPHQLFAD 213
Query: 274 AP 275
AP
Sbjct: 214 AP 215
>gi|52547949|gb|AAM28203.2| splicing factor 3b subunit 4 [Danio rerio]
Length = 400
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 179/241 (74%), Positives = 196/241 (81%), Gaps = 38/241 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DAAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLFAD
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFAD 213
Query: 274 A 274
A
Sbjct: 214 A 214
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|196007894|ref|XP_002113813.1| hypothetical protein TRIADDRAFT_26280 [Trichoplax adhaerens]
gi|190584217|gb|EDV24287.1| hypothetical protein TRIADDRAFT_26280 [Trichoplax adhaerens]
Length = 291
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 178/243 (73%), Positives = 198/243 (81%), Gaps = 38/243 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVG LD+KVSETL+WELF+Q+GPVVNVHMPKDR+TQ HQGYGFIEF+GE+DADYAI
Sbjct: 12 DATIYVGNLDEKVSETLLWELFLQAGPVVNVHMPKDRITQAHQGYGFIEFLGEDDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGAN+FIGNLDPEVDEK LYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANVFIGNLDPEVDEKQLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TG SKGFAFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPETGQSKGFAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+++AM+GQ+LCNR I+VSYAFKKDSKG+RHGSAAERLLAAQNPL Q+DRPHQLFAD
Sbjct: 154 ASDAAMEAMNGQFLCNRTINVSYAFKKDSKGERHGSAAERLLAAQNPLVQSDRPHQLFAD 213
Query: 274 APP 276
APP
Sbjct: 214 APP 216
>gi|358337762|dbj|GAA56093.1| splicing factor 3B subunit 4 [Clonorchis sinensis]
Length = 363
Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 175/249 (70%), Positives = 202/249 (81%), Gaps = 38/249 (15%)
Query: 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMG 85
GG E + DATIYVGGLD+K +E+++WELF+Q+GPVVNVHMPKDR+T HQGYGF+EFM
Sbjct: 4 GGVEERNQDATIYVGGLDEKTTESILWELFLQAGPVVNVHMPKDRITMQHQGYGFVEFMT 63
Query: 86 EEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
EEDADYA++IMNMIKL+GKPIRVNKAS++QKNLD+GANIFIGNLDPEVDEKLLYDTFSAF
Sbjct: 64 EEDADYAMRIMNMIKLFGKPIRVNKASANQKNLDIGANIFIGNLDPEVDEKLLYDTFSAF 123
Query: 146 GVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFA 205
GVILQTPK IMRDP+TGNSKG+A
Sbjct: 124 GVILQTPK--------------------------------------IMRDPETGNSKGYA 145
Query: 206 FINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQAD 265
FIN+ASFEASDA+I+AM+GQYLCNR I++SYAFKKDSKG+RHGSAAERLLAAQ+PLSQA+
Sbjct: 146 FINFASFEASDAAIEAMNGQYLCNRAITISYAFKKDSKGERHGSAAERLLAAQSPLSQAE 205
Query: 266 RPHQLFADA 274
RPHQLFADA
Sbjct: 206 RPHQLFADA 214
>gi|387018636|gb|AFJ51436.1| Splicing factor 3B subunit 4-like [Crotalus adamanteus]
Length = 417
Score = 366 bits (940), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 180/241 (74%), Positives = 197/241 (81%), Gaps = 38/241 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLFAD
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFAD 213
Query: 274 A 274
A
Sbjct: 214 A 214
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|327290521|ref|XP_003229971.1| PREDICTED: splicing factor 3B subunit 4-like [Anolis carolinensis]
Length = 417
Score = 366 bits (940), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 180/241 (74%), Positives = 197/241 (81%), Gaps = 38/241 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLFAD
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFAD 213
Query: 274 A 274
A
Sbjct: 214 A 214
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|256083494|ref|XP_002577978.1| splicing factor 3b subunit 4 (fragment) [Schistosoma mansoni]
gi|350645079|emb|CCD60205.1| splicing factor 3b, subunit 4 (fragment),putative [Schistosoma
mansoni]
Length = 344
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 174/246 (70%), Positives = 200/246 (81%), Gaps = 38/246 (15%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E + DATIYVGGLD+KV+E+++WELF+Q+GPVVNVHMPKDR+ HQGYGF+EFM EED
Sbjct: 7 EERNQDATIYVGGLDEKVNESILWELFLQAGPVVNVHMPKDRINMQHQGYGFVEFMTEED 66
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
ADYA++IMNMIKLYGKPIRVNKAS++QKNLD+GANIFIGNLDPEVDEKLLYDTFSAFGVI
Sbjct: 67 ADYAMRIMNMIKLYGKPIRVNKASANQKNLDIGANIFIGNLDPEVDEKLLYDTFSAFGVI 126
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFIN 208
LQTPK IMRDP+TGNSKG+AFIN
Sbjct: 127 LQTPK--------------------------------------IMRDPETGNSKGYAFIN 148
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPH 268
+ASFEASDA+I+AM+GQYLCNR I++SYAFKKDSKG+RHGSAAERLLAAQ+PLSQA+RPH
Sbjct: 149 FASFEASDAAIEAMNGQYLCNRAITISYAFKKDSKGERHGSAAERLLAAQSPLSQAERPH 208
Query: 269 QLFADA 274
QLFADA
Sbjct: 209 QLFADA 214
>gi|118102061|ref|XP_423721.2| PREDICTED: splicing factor 3B subunit 4 [Gallus gallus]
Length = 418
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 180/241 (74%), Positives = 197/241 (81%), Gaps = 38/241 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLFAD
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFAD 213
Query: 274 A 274
A
Sbjct: 214 A 214
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|301789695|ref|XP_002930273.1| PREDICTED: splicing factor 3B subunit 4-like, partial [Ailuropoda
melanoleuca]
Length = 252
Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|291398067|ref|XP_002715414.1| PREDICTED: splicing factor 3b, subunit 4 [Oryctolagus cuniculus]
Length = 384
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|340723814|ref|XP_003400283.1| PREDICTED: splicing factor 3B subunit 4-like [Bombus terrestris]
Length = 413
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 177/228 (77%), Positives = 189/228 (82%), Gaps = 38/228 (16%)
Query: 44 DKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYG 103
DKV+E+LMWELFVQSGPVVNVHMPKDRVTQ HQGYGF+EFMGEEDADYAIKIMNMIKLYG
Sbjct: 22 DKVTESLMWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFMGEEDADYAIKIMNMIKLYG 81
Query: 104 KPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGK 163
KPIRVNKAS+HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK
Sbjct: 82 KPIRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK---------- 131
Query: 164 PIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMH 223
IMRDP+TGNSKGFAFIN+ASF+ASDASI+AM+
Sbjct: 132 ----------------------------IMRDPETGNSKGFAFINFASFDASDASIEAMN 163
Query: 224 GQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
GQYLCNRPISVSYAFK+D+KG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 164 GQYLCNRPISVSYAFKRDAKGERHGSAAERLLAAQNPLSQADRPHQLF 211
>gi|194210863|ref|XP_001488649.2| PREDICTED: splicing factor 3B subunit 4-like [Equus caballus]
Length = 450
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|432114293|gb|ELK36221.1| Splicing factor 3B subunit 4 [Myotis davidii]
Length = 379
Score = 362 bits (928), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|345782582|ref|XP_540295.3| PREDICTED: splicing factor 3B subunit 4 [Canis lupus familiaris]
Length = 424
Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|431896603|gb|ELK06015.1| Splicing factor 3B subunit 4 [Pteropus alecto]
Length = 424
Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|351705667|gb|EHB08586.1| Splicing factor 3B subunit 4 [Heterocephalus glaber]
Length = 486
Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|405961983|gb|EKC27707.1| Splicing factor 3B subunit 4 [Crassostrea gigas]
Length = 405
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 174/240 (72%), Positives = 195/240 (81%), Gaps = 38/240 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVG LDDKV+E ++WELF+Q+GPVVNVHMPKDRVTQ+HQGYGF+EFMGEEDADYAI
Sbjct: 12 DATVYVGSLDDKVTEAILWELFLQAGPVVNVHMPKDRVTQSHQGYGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASFE
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
A+DA+++AM+GQ+LCNR IS+S+AFKKDSKG+RHGSAAER +A QNPLS DRPHQLFAD
Sbjct: 154 AADAALEAMNGQFLCNRAISISFAFKKDSKGERHGSAAERFMAKQNPLSLTDRPHQLFAD 213
>gi|449489905|ref|XP_002191033.2| PREDICTED: splicing factor 3B subunit 4 [Taeniopygia guttata]
Length = 307
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|194036296|ref|XP_001926524.1| PREDICTED: splicing factor 3B subunit 4 [Sus scrofa]
gi|344275508|ref|XP_003409554.1| PREDICTED: splicing factor 3B subunit 4-like [Loxodonta africana]
gi|417400717|gb|JAA47284.1| Putative splicing factor 3b subunit 4 [Desmodus rotundus]
Length = 424
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|296228655|ref|XP_002759903.1| PREDICTED: splicing factor 3B subunit 4 [Callithrix jacchus]
Length = 424
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|348586343|ref|XP_003478928.1| PREDICTED: splicing factor 3B subunit 4-like [Cavia porcellus]
Length = 424
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|5032069|ref|NP_005841.1| splicing factor 3B subunit 4 [Homo sapiens]
gi|386781627|ref|NP_001248161.1| splicing factor 3B subunit 4 [Macaca mulatta]
gi|114559210|ref|XP_513768.2| PREDICTED: splicing factor 3B subunit 4 isoform 4 [Pan troglodytes]
gi|397492924|ref|XP_003817370.1| PREDICTED: splicing factor 3B subunit 4 [Pan paniscus]
gi|402856043|ref|XP_003892612.1| PREDICTED: splicing factor 3B subunit 4 [Papio anubis]
gi|426331272|ref|XP_004026606.1| PREDICTED: splicing factor 3B subunit 4 [Gorilla gorilla gorilla]
gi|2500587|sp|Q15427.1|SF3B4_HUMAN RecName: Full=Splicing factor 3B subunit 4; AltName:
Full=Pre-mRNA-splicing factor SF3b 49 kDa subunit;
AltName: Full=SF3b50; AltName:
Full=Spliceosome-associated protein 49; Short=SAP 49
gi|556217|gb|AAA60300.1| spliceosomal protein [Homo sapiens]
gi|13279089|gb|AAH04273.1| Splicing factor 3b, subunit 4, 49kDa [Homo sapiens]
gi|15530216|gb|AAH13886.1| Splicing factor 3b, subunit 4, 49kDa [Homo sapiens]
gi|55960588|emb|CAI12648.1| splicing factor 3b, subunit 4, 49kDa [Homo sapiens]
gi|55960980|emb|CAI12554.1| splicing factor 3b, subunit 4, 49kDa [Homo sapiens]
gi|60688325|gb|AAH90883.1| Splicing factor 3b, subunit 4, 49kDa [Homo sapiens]
gi|119573980|gb|EAW53595.1| splicing factor 3b, subunit 4, 49kDa [Homo sapiens]
gi|123989960|gb|ABM83897.1| splicing factor 3b, subunit 4, 49kDa [synthetic construct]
gi|123999284|gb|ABM87219.1| splicing factor 3b, subunit 4, 49kDa [synthetic construct]
gi|157928508|gb|ABW03550.1| splicing factor 3b, subunit 4, 49kDa [synthetic construct]
gi|261859948|dbj|BAI46496.1| splicing factor 3b, subunit 4, 49kDa [synthetic construct]
gi|355745635|gb|EHH50260.1| hypothetical protein EGM_01064 [Macaca fascicularis]
gi|380808686|gb|AFE76218.1| splicing factor 3B subunit 4 [Macaca mulatta]
gi|383415041|gb|AFH30734.1| splicing factor 3B subunit 4 [Macaca mulatta]
gi|410207952|gb|JAA01195.1| splicing factor 3b, subunit 4, 49kDa [Pan troglodytes]
gi|410251462|gb|JAA13698.1| splicing factor 3b, subunit 4, 49kDa [Pan troglodytes]
gi|410292418|gb|JAA24809.1| splicing factor 3b, subunit 4, 49kDa [Pan troglodytes]
gi|410337561|gb|JAA37727.1| splicing factor 3b, subunit 4, 49kDa [Pan troglodytes]
Length = 424
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|126313662|ref|XP_001365466.1| PREDICTED: splicing factor 3B subunit 4-like [Monodelphis
domestica]
Length = 424
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|410968226|ref|XP_004001545.1| PREDICTED: LOW QUALITY PROTEIN: splicing factor 3B subunit 4 [Felis
catus]
Length = 424
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|329663420|ref|NP_001192513.1| splicing factor 3B subunit 4 [Bos taurus]
gi|395856067|ref|XP_003800464.1| PREDICTED: splicing factor 3B subunit 4 [Otolemur garnettii]
gi|426216470|ref|XP_004002485.1| PREDICTED: splicing factor 3B subunit 4 [Ovis aries]
gi|281346199|gb|EFB21783.1| hypothetical protein PANDA_020653 [Ailuropoda melanoleuca]
gi|296489611|tpg|DAA31724.1| TPA: splicing factor 3b, subunit 4, 49kDa [Bos taurus]
Length = 424
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|444515113|gb|ELV10775.1| Splicing factor 3B subunit 4 [Tupaia chinensis]
Length = 355
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|75948207|gb|AAI05267.1| SF3B4 protein [Bos taurus]
Length = 418
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 6 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 65
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 66 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 125
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 126 --------------------------------------IMRDPDTGNSKGYAFINFASFD 147
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 148 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 205
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 2 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 59
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 60 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 119
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 120 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 179
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 180 RHGSAAERLLAAQNPLSQADRPHQLFA 206
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 91 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 150
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 151 AAIEAMNGQYLCNRPITVSYA 171
>gi|23346437|ref|NP_694693.1| splicing factor 3B subunit 4 [Mus musculus]
gi|58865472|ref|NP_001011951.1| splicing factor 3B subunit 4 [Rattus norvegicus]
gi|354472911|ref|XP_003498680.1| PREDICTED: splicing factor 3B subunit 4-like [Cricetulus griseus]
gi|81910895|sp|Q6AYL5.1|SF3B4_RAT RecName: Full=Splicing factor 3B subunit 4
gi|81914822|sp|Q8QZY9.1|SF3B4_MOUSE RecName: Full=Splicing factor 3B subunit 4
gi|20071686|gb|AAH26567.1| Splicing factor 3b, subunit 4 [Mus musculus]
gi|26338948|dbj|BAC33145.1| unnamed protein product [Mus musculus]
gi|37537250|gb|AAH24418.3| Splicing factor 3b, subunit 4 [Mus musculus]
gi|50925599|gb|AAH78997.1| Splicing factor 3b, subunit 4 [Rattus norvegicus]
gi|55391441|gb|AAH85273.1| Splicing factor 3b, subunit 4 [Mus musculus]
gi|74183317|dbj|BAE22576.1| unnamed protein product [Mus musculus]
gi|148706922|gb|EDL38869.1| splicing factor 3b, subunit 4 [Mus musculus]
gi|149030610|gb|EDL85647.1| rCG51900 [Rattus norvegicus]
gi|344238680|gb|EGV94783.1| Splicing factor 3B subunit 4 [Cricetulus griseus]
Length = 424
Score = 360 bits (925), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|355718837|gb|AES06403.1| splicing factor 3b, subunit 4, 49kDa [Mustela putorius furo]
Length = 406
Score = 360 bits (925), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 10 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 69
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 70 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 129
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 130 --------------------------------------IMRDPDTGNSKGYAFINFASFD 151
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 152 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 209
Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 6 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 63
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 64 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 123
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 124 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 183
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 184 RHGSAAERLLAAQNPLSQADRPHQLFA 210
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 95 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 154
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 155 AAIEAMNGQYLCNRPITVSYA 175
>gi|403302777|ref|XP_003942029.1| PREDICTED: splicing factor 3B subunit 4 [Saimiri boliviensis
boliviensis]
Length = 424
Score = 359 bits (921), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 176/238 (73%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IM+DPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMQDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/207 (58%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
M+DPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMQDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMQDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|62898205|dbj|BAD97042.1| splicing factor 3b, subunit 4 variant [Homo sapiens]
Length = 424
Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 176/238 (73%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIM+MIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMDMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 122/207 (58%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIM+MIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMDMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|198425590|ref|XP_002119350.1| PREDICTED: similar to splicing factor 3b, subunit 4 [Ciona
intestinalis]
Length = 375
Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 173/248 (69%), Positives = 198/248 (79%), Gaps = 38/248 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KV+E L+WELF+Q+G VV+ HMPKDR++ +HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVAEPLLWELFLQAGVVVSTHMPKDRISGSHQGYGFVEFLAEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+NMIKLYGKPIRVNKASSHQKNLDVGAN+FIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KILNMIKLYGKPIRVNKASSHQKNLDVGANLFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASFE
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+++AM+GQ+LCNRPIS+SYAFKKDSKG+RHG AAERLLA QNPLSQADRPH +FAD
Sbjct: 154 ASDAAMEAMNGQHLCNRPISISYAFKKDSKGERHGGAAERLLAVQNPLSQADRPHTMFAD 213
Query: 274 APPPAPLP 281
AP P P
Sbjct: 214 APSEMPTP 221
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +++G LD ++ E L+++ F G ++ + +D T +GY FI F E +D
Sbjct: 97 DVGANLFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFEASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
A++ MN L +PI ++ A
Sbjct: 157 AAMEAMNGQHLCNRPISISYA 177
>gi|355558380|gb|EHH15160.1| hypothetical protein EGK_01215 [Macaca mulatta]
Length = 424
Score = 356 bits (913), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 174/238 (73%), Positives = 193/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCN PI++SYAF+KDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNCPITISYAFRKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/207 (57%), Positives = 141/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCN PI++SYAF+KDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNCPITISYAFRKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
>gi|193783541|dbj|BAG53452.1| unnamed protein product [Homo sapiens]
Length = 424
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 175/238 (73%), Positives = 192/238 (80%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKA +H KNLDVGANIFI NLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKALAHNKNLDVGANIFIENLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/207 (58%), Positives = 140/207 (67%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKA +H KNLDVGANIFI NLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKALAHNKNLDVGANIFIENLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++ LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIENLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|313237737|emb|CBY12875.1| unnamed protein product [Oikopleura dioica]
Length = 307
Score = 350 bits (898), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 170/248 (68%), Positives = 196/248 (79%), Gaps = 43/248 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KV+E L+ ELF+Q GPVVN HMPKDRVTQTHQGYGF+EF+ E+DADYAI
Sbjct: 10 DATVYVGGLDEKVTEHLLAELFIQVGPVVNCHMPKDRVTQTHQGYGFVEFLSEDDADYAI 69
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+NMIKL+GKP+RVNKASSHQKNLDVGAN+FIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 70 KILNMIKLFGKPVRVNKASSHQKNLDVGANLFIGNLDPEIDEKLLYDTFSAFGVILQTPK 129
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKGFAFINY+SFE
Sbjct: 130 --------------------------------------IMRDPDTGNSKGFAFINYSSFE 151
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
A+DA+++AM+GQYLCNRPI++S+AFKKD KG+RHGSAAERLLAAQNP++ DRPH +FAD
Sbjct: 152 AADAALEAMNGQYLCNRPITISFAFKKDGKGERHGSAAERLLAAQNPMATNDRPHTMFAD 211
Query: 274 -----APP 276
APP
Sbjct: 212 GVGGNAPP 219
>gi|313240198|emb|CBY32547.1| unnamed protein product [Oikopleura dioica]
Length = 307
Score = 350 bits (897), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 170/248 (68%), Positives = 196/248 (79%), Gaps = 43/248 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KV+E L+ ELF+Q GPVVN HMPKDRVTQTHQGYGF+EF+ E+DADYAI
Sbjct: 10 DATVYVGGLDEKVTEHLLAELFIQVGPVVNCHMPKDRVTQTHQGYGFVEFLSEDDADYAI 69
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+NMIKL+GKP+RVNKASSHQKNLDVGAN+FIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 70 KILNMIKLFGKPVRVNKASSHQKNLDVGANLFIGNLDPEIDEKLLYDTFSAFGVILQTPK 129
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKGFAFINY+SFE
Sbjct: 130 --------------------------------------IMRDPDTGNSKGFAFINYSSFE 151
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
A+DA+++AM+GQYLCNRPI++S+AFKKD KG+RHGSAAERLLAAQNP++ DRPH +FAD
Sbjct: 152 AADAALEAMNGQYLCNRPITISFAFKKDGKGERHGSAAERLLAAQNPMATNDRPHTMFAD 211
Query: 274 -----APP 276
APP
Sbjct: 212 GVGGNAPP 219
>gi|340381114|ref|XP_003389066.1| PREDICTED: splicing factor 3B subunit 4-like [Amphimedon
queenslandica]
Length = 364
Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 164/246 (66%), Positives = 195/246 (79%), Gaps = 38/246 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLD+KVSE+++WELF+Q+GPVVN+H+P+DR+TQTHQGYGF+EFMGE+DADYAI
Sbjct: 12 DATIYVGGLDEKVSESVLWELFLQAGPVVNIHIPRDRITQTHQGYGFVEFMGEDDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKA+S+ K+LD+GAN+FIGNLDPE+DEK+LYD FSAFGVILQ PK
Sbjct: 72 KIMNMIKLYGKPIRVNKAASNMKSLDIGANLFIGNLDPEIDEKMLYDIFSAFGVILQAPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRD D+G SKGFAF+N+ASF+
Sbjct: 132 --------------------------------------IMRDVDSGGSKGFAFVNFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNR +SVSYAFKK+SKG+RHG+ ER LA Q+PL Q DRPHQLFAD
Sbjct: 154 ASDAAIEAMNGQYLCNRQVSVSYAFKKESKGERHGTWEERYLAKQSPLLQTDRPHQLFAD 213
Query: 274 APPPAP 279
APP AP
Sbjct: 214 APPKAP 219
>gi|340382462|ref|XP_003389738.1| PREDICTED: hypothetical protein LOC100632716 [Amphimedon
queenslandica]
Length = 433
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 164/247 (66%), Positives = 196/247 (79%), Gaps = 38/247 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLD+KVSE+++WELF+Q+GPVVN+H+P+DR+TQTHQGYGF+EFMGE+DADYAI
Sbjct: 12 DATIYVGGLDEKVSESVLWELFLQAGPVVNIHIPRDRITQTHQGYGFVEFMGEDDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKA+S+ K+LD+GAN+FIGNLDPE+DEK+LYD FSAFGVILQ PK
Sbjct: 72 KIMNMIKLYGKPIRVNKAASNMKSLDIGANLFIGNLDPEIDEKMLYDIFSAFGVILQAPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRD D+G SKGFAF+N+ASF+
Sbjct: 132 --------------------------------------IMRDVDSGGSKGFAFVNFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNR +SVSYAFKK+SKG+RHG+ ER LA Q+PL Q DRPHQLFAD
Sbjct: 154 ASDAAIEAMNGQYLCNRQVSVSYAFKKESKGERHGTWEERYLAKQSPLLQTDRPHQLFAD 213
Query: 274 APPPAPL 280
APP AP+
Sbjct: 214 APPKAPV 220
>gi|115532084|ref|NP_001021932.1| Protein SAP-49 [Caenorhabditis elegans]
gi|55977846|sp|Q09442.2|SF3B4_CAEEL RecName: Full=Splicing factor 3B subunit 4; AltName:
Full=Spliceosome-associated protein 49
gi|50511896|emb|CAB60993.2| Protein SAP-49 [Caenorhabditis elegans]
Length = 388
Score = 343 bits (879), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 173/281 (61%), Positives = 205/281 (72%), Gaps = 49/281 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLD+KVSE+++WEL VQ+GPVV+V+MPKDRVT HQG+GF+EFMGEEDADYAI
Sbjct: 12 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+NMIKLYGKPI+VNKAS+H+KN+DVGANIF+GNLDPEVDEKLLYDTFSAFGVILQ PK
Sbjct: 72 KILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRD D+G SKGFAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDVDSGTSKGFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASD +++AM+GQ+LCNR I+VSYAFK+DSKG+RHG+AAER+LAAQNPL DRPHQ+F+D
Sbjct: 154 ASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSD 213
Query: 274 AP--PPAPLPPPPPPINIM---------GLPPPPPSGLRAS 303
P PA P P ++ G PPP G+ S
Sbjct: 214 VPLGVPANTPLAMPGVHAAIAAHATGRPGYQPPPLMGMAQS 254
>gi|402593376|gb|EJW87303.1| hypothetical protein WUBG_01785 [Wuchereria bancrofti]
Length = 375
Score = 343 bits (879), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 161/244 (65%), Positives = 196/244 (80%), Gaps = 38/244 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLD+KV++ ++WELFVQ+GPVV+V+MPKDRVT +HQG+GFIEFMGEEDADYAI
Sbjct: 12 DATIYVGGLDEKVTDAILWELFVQAGPVVSVNMPKDRVTSSHQGFGFIEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPI+VNKAS+H+KN+DVGAN+F+GNLDPEVDEKLL+DTFSAFGVILQ PK
Sbjct: 72 KIMNMIKLYGKPIKVNKASAHEKNMDVGANVFVGNLDPEVDEKLLFDTFSAFGVILQVPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRD +TGNSKGFAF+N+ASFE
Sbjct: 132 --------------------------------------IMRDAETGNSKGFAFVNFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASD++I+AM+GQ+LCNR I+VSYAFKKD+KG+RHG+AAER+LAAQNPL +D+P+Q+F+D
Sbjct: 154 ASDSAIEAMNGQFLCNRAITVSYAFKKDTKGERHGTAAERMLAAQNPLFPSDKPNQIFSD 213
Query: 274 APPP 277
P
Sbjct: 214 GKLP 217
>gi|1002380|gb|AAC47514.1| RRM-type RNA binding protein [Caenorhabditis elegans]
Length = 398
Score = 342 bits (878), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 173/281 (61%), Positives = 205/281 (72%), Gaps = 49/281 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLD+KVSE+++WEL VQ+GPVV+V+MPKDRVT HQG+GF+EFMGEEDADYAI
Sbjct: 22 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAI 81
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+NMIKLYGKPI+VNKAS+H+KN+DVGANIF+GNLDPEVDEKLLYDTFSAFGVILQ PK
Sbjct: 82 KILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 141
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRD D+G SKGFAFIN+ASFE
Sbjct: 142 --------------------------------------IMRDVDSGTSKGFAFINFASFE 163
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASD +++AM+GQ+LCNR I+VSYAFK+DSKG+RHG+AAER+LAAQNPL DRPHQ+F+D
Sbjct: 164 ASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSD 223
Query: 274 AP--PPAPLPPPPPPINIM---------GLPPPPPSGLRAS 303
P PA P P ++ G PPP G+ S
Sbjct: 224 VPLGVPANTPLAMPGVHAAIAAHATGRPGYQPPPLMGMAQS 264
>gi|324512478|gb|ADY45169.1| Splicing factor 3B subunit 4 [Ascaris suum]
Length = 399
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 161/240 (67%), Positives = 194/240 (80%), Gaps = 38/240 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLD+KV++ ++WELFVQSGPVV+V+MPKDRVT +HQG+GF+EFMGEEDADYAI
Sbjct: 12 DATIYVGGLDEKVTDAILWELFVQSGPVVSVNMPKDRVTNSHQGFGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPI+VNKAS+H+KN+DVGANIF+GNLDPEVDEKLL+DTFSAFGVILQ PK
Sbjct: 72 KIMNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLFDTFSAFGVILQVPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRD +TGNSKGFAF+N+ASFE
Sbjct: 132 --------------------------------------IMRDAETGNSKGFAFVNFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASD++I+AM GQ+LCNR I+VSYAFKKD+KG+RHG+AAER+LAAQNPL +D+P+Q+F+D
Sbjct: 154 ASDSAIEAMSGQFLCNRAITVSYAFKKDAKGERHGTAAERMLAAQNPLFPSDKPNQMFSD 213
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 105/262 (40%), Positives = 138/262 (52%), Gaps = 103/262 (39%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A I++G LD +V + +L++ F G ++
Sbjct: 8 ERNQD--ATIYVGGLDEKVTDAILWELFVQSGPVVSVNMPKDRVTNSHQGFGFVEFMGEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPE--------------- 191
KIMNMIKLYGKPI+VNKAS+H+KN+DVGANIF+GNLDPE
Sbjct: 66 DADYAIKIMNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLFDTFSAFGV 125
Query: 192 ------IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
IMRD +TGNSKGFAF+N+ASFEASD++I+AM GQ+LCNR I+VSYAFKKD+KG+
Sbjct: 126 ILQVPKIMRDAETGNSKGFAFVNFASFEASDSAIEAMSGQFLCNRAITVSYAFKKDAKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFADAP------------------------------ 275
RHG+AAER+LAAQNPL +D+P+Q+F+D
Sbjct: 186 RHGTAAERMLAAQNPLFPSDKPNQMFSDGKMPLPPIAPPVPPPPGPPIPPPMMPPLSAPP 245
Query: 275 ---------------------- 275
Sbjct: 246 PVVFPPPPPPVPTPGATPIPPP 267
>gi|312067511|ref|XP_003136777.1| spliceosomal protein on the X [Loa loa]
gi|307768054|gb|EFO27288.1| spliceosomal protein on the X [Loa loa]
Length = 375
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 161/244 (65%), Positives = 196/244 (80%), Gaps = 38/244 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLD+KV++ ++WELFVQ+GPVV+V+MPKDRVT +HQG+GFIEFMGEEDADYAI
Sbjct: 12 DATIYVGGLDEKVTDAILWELFVQAGPVVSVNMPKDRVTSSHQGFGFIEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPI+VNKAS+H+KN+DVGAN+F+GNLDPEVDEKLL+DTFSAFGVILQ PK
Sbjct: 72 KIMNMIKLYGKPIKVNKASAHEKNMDVGANVFVGNLDPEVDEKLLFDTFSAFGVILQVPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRD +TGNSKGFAF+N+ASFE
Sbjct: 132 --------------------------------------IMRDAETGNSKGFAFVNFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASD++I+AM+GQ+LCNR I+VSYAFKKD+KG+RHG+AAER+LAAQNPL +D+P+Q+F+D
Sbjct: 154 ASDSAIEAMNGQFLCNRAITVSYAFKKDTKGERHGTAAERMLAAQNPLFPSDKPNQIFSD 213
Query: 274 APPP 277
P
Sbjct: 214 GKLP 217
>gi|170590788|ref|XP_001900153.1| Hypothetical RNA-binding protein C08B11.5 in chromosome II,
putative [Brugia malayi]
gi|158592303|gb|EDP30903.1| Hypothetical RNA-binding protein C08B11.5 in chromosome II,
putative [Brugia malayi]
Length = 375
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 160/244 (65%), Positives = 195/244 (79%), Gaps = 38/244 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLD+KV++ ++WELFVQ+GPVV+V+MPKDRVT +HQG+GFIEFMGEEDADYAI
Sbjct: 12 DATIYVGGLDEKVTDAILWELFVQAGPVVSVNMPKDRVTSSHQGFGFIEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPI+VNKAS+H+KN+DVGAN+F+GNLDPEVDEKLL+DTFSAFGVILQ PK
Sbjct: 72 KIMNMIKLYGKPIKVNKASAHEKNMDVGANVFVGNLDPEVDEKLLFDTFSAFGVILQVPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRD +TG SKGFAF+N+ASFE
Sbjct: 132 --------------------------------------IMRDAETGXSKGFAFVNFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASD++I+AM+GQ+LCNR I+VSYAFKKD+KG+RHG+AAER+LAAQNPL +D+P+Q+F+D
Sbjct: 154 ASDSAIEAMNGQFLCNRAITVSYAFKKDTKGERHGTAAERMLAAQNPLFPSDKPNQIFSD 213
Query: 274 APPP 277
P
Sbjct: 214 GKLP 217
>gi|308510552|ref|XP_003117459.1| CRE-SAP-49 protein [Caenorhabditis remanei]
gi|308242373|gb|EFO86325.1| CRE-SAP-49 protein [Caenorhabditis remanei]
Length = 389
Score = 340 bits (873), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 165/250 (66%), Positives = 193/250 (77%), Gaps = 38/250 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLD+KVSE ++WEL VQ+GPVV+V+MPKDRVT HQG+GF+EFMGEEDADYAI
Sbjct: 12 DATIYVGGLDEKVSEAILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+NMIKLYGKPI+VNKAS+H+KN+DVGANIF+GNLDPEVDEKLLYDTFSAFGVILQ PK
Sbjct: 72 KILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRD D+G SKGFAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDVDSGTSKGFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASD +++AM+GQ+LCNR I+VSYAFK+DSKG+RHG+AAER+LAAQNPL DRPHQ+F+D
Sbjct: 154 ASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSD 213
Query: 274 APPPAPLPPP 283
P P P
Sbjct: 214 VPLGVPANTP 223
>gi|341882220|gb|EGT38155.1| hypothetical protein CAEBREN_32522 [Caenorhabditis brenneri]
gi|341882722|gb|EGT38657.1| hypothetical protein CAEBREN_06124 [Caenorhabditis brenneri]
Length = 388
Score = 340 bits (871), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 165/250 (66%), Positives = 193/250 (77%), Gaps = 38/250 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLD+KVSE+++WEL VQ+GPVV+V+MPKDRVT HQG+GF+EFMGEEDADYAI
Sbjct: 12 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+NMIKLYGKPI+VNKAS+H+KN+DVGANIF+GNLDPEVDEKLLYDTFSAFGVILQ PK
Sbjct: 72 KILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRD D+G SKGFAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDVDSGTSKGFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASD +++AM+GQ+LCNR I+VSYAFK+DSKG+RHG+AAER+LAAQNPL DRPHQ F+D
Sbjct: 154 ASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQQFSD 213
Query: 274 APPPAPLPPP 283
P P P
Sbjct: 214 VPLGVPANTP 223
>gi|357612263|gb|EHJ67888.1| spliceosomal protein on the X [Danaus plexippus]
Length = 259
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 162/220 (73%), Positives = 179/220 (81%), Gaps = 38/220 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLDD+V+E+L+WELFVQ+GPVVNVHMPKDRVTQTHQGYGF+EFMGEEDADYAI
Sbjct: 12 DATIYVGGLDDRVTESLLWELFVQAGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K+MNMIKLYGKP+RVNKAS+HQKNLDVGAN+FIGNLDPEVDEKLLYDTFSAFGVILQTPK
Sbjct: 72 KVMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+MRDP+TGNSK FAFIN+ASFE
Sbjct: 132 --------------------------------------VMRDPETGNSKAFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
ASDA+I+AM+ QYLCNRPISVSYAFKKD KG+RHGSAAER
Sbjct: 154 ASDAAIEAMNNQYLCNRPISVSYAFKKDVKGERHGSAAER 193
>gi|395535971|ref|XP_003769994.1| PREDICTED: splicing factor 3B subunit 4 [Sarcophilus harrisii]
Length = 462
Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 167/227 (73%), Positives = 182/227 (80%), Gaps = 38/227 (16%)
Query: 45 KVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGK 104
KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAIKIMNMIKLYGK
Sbjct: 61 KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGK 120
Query: 105 PIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKP 164
PIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 121 PIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK----------- 169
Query: 165 IRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHG 224
IMRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+G
Sbjct: 170 ---------------------------IMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 202
Query: 225 QYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
QYLCNRPI+VSYAFKKDSKG+RHGSA ERLLAAQNPLSQADRPHQLF
Sbjct: 203 QYLCNRPITVSYAFKKDSKGERHGSAPERLLAAQNPLSQADRPHQLF 249
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/141 (77%), Positives = 118/141 (83%), Gaps = 21/141 (14%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 110 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 169
Query: 193 -MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA 251
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSA
Sbjct: 170 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAP 229
Query: 252 ERLLAAQNPLSQADRPHQLFA 272
ERLLAAQNPLSQADRPHQLFA
Sbjct: 230 ERLLAAQNPLSQADRPHQLFA 250
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 135 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 194
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 195 AAIEAMNGQYLCNRPITVSYA 215
>gi|268529722|ref|XP_002629987.1| C. briggsae CBR-SAP-49 protein [Caenorhabditis briggsae]
Length = 370
Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 172/281 (61%), Positives = 203/281 (72%), Gaps = 49/281 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLD+KVSE ++WEL VQ+GPVV+V+MPKDRVT HQG+GF+EFMGEEDADYAI
Sbjct: 12 DATIYVGGLDEKVSEAILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+NMIKLYGKPI+VNKAS+H+KN+DVGANIF+GNLDPEVDEKLLYDTFSAFGVILQ PK
Sbjct: 72 KILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRD D+G SKGFAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDVDSGTSKGFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASD ++AM GQ+LCNR I+VSYAFK+DSKG+RHG+AAER+LA+QNPL DRPHQ+F+D
Sbjct: 154 ASDRGLEAMRGQFLCNRAITVSYAFKRDSKGERHGTAAERMLASQNPLFPKDRPHQVFSD 213
Query: 274 AP--PPAPLPPPPPPINIM---------GLPPPPPSGLRAS 303
P PA P P ++ G PPP G+ A+
Sbjct: 214 VPLGVPANTPLAIPGVHAAIAAHATGRPGYQPPPLMGMPAN 254
>gi|326430602|gb|EGD76172.1| splicing factor 3b [Salpingoeca sp. ATCC 50818]
Length = 256
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 165/263 (62%), Positives = 194/263 (73%), Gaps = 40/263 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLDD+ +E+L+WELF Q+GPVV+VHMPKDRVT HQGYGF+EF+GEEDA+YA+
Sbjct: 11 DATVYVGGLDDRATESLLWELFQQAGPVVSVHMPKDRVTGLHQGYGFVEFLGEEDAEYAL 70
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMI LYGKPIRVNKA+SH + DVGAN++IGNLDP VDEKLLYDTFSAFGVILQ PK
Sbjct: 71 KIMNMINLYGKPIRVNKAASHTRTQDVGANLYIGNLDPSVDEKLLYDTFSAFGVILQHPK 130
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTG SKG+AF+NYA+FE
Sbjct: 131 --------------------------------------IMRDPDTGASKGYAFVNYANFE 152
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQAD-RPHQLFA 272
ASDA+I AM+GQYLCNR I+V+YAFKKD+KG+RHGSAAERLLAAQ P+ + D +PHQ FA
Sbjct: 153 ASDAAIKAMNGQYLCNRNINVTYAFKKDTKGERHGSAAERLLAAQKPVIKTDQKPHQYFA 212
Query: 273 DAPPPAP-LPPPPPPINIMGLPP 294
+ P AP P PPP + P
Sbjct: 213 EKPNAAPTFQPGPPPAQAVSFQP 235
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVV-NVHMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +Y+G LD V E L+++ F G ++ + + +D T +GY F+ + E +D
Sbjct: 96 DVGANLYIGNLDPSVDEKLLYDTFSAFGVILQHPKIMRDPDTGASKGYAFVNYANFEASD 155
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AIK MN L + I V A
Sbjct: 156 AAIKAMNGQYLCNRNINVTYA 176
>gi|356532261|ref|XP_003534692.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 365
Score = 326 bits (835), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 195/279 (69%), Gaps = 53/279 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT YVG LD ++SE L+WELFVQ+GPVVNV++PKDRVT HQGYGF+EF EEDADYAI
Sbjct: 24 DATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K++NMIKLYGKPIRVNKAS +K+LDVGAN+FIGNLDP+VDEKLLYDTFSAFGVI+ PK
Sbjct: 84 KVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNS+GF FI+Y SFE
Sbjct: 144 --------------------------------------IMRDPDTGNSRGFGFISYDSFE 165
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASD++I+AM+GQYLCNR I+VSYA+KKD+KG+RHG+ AER+LAA NP +Q RPH LFA
Sbjct: 166 ASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTTQKSRPHTLFAS 225
Query: 274 APPP----------APLPPPP-----PPINIMGLPPPPP 297
PP AP+PP P P I L PPPP
Sbjct: 226 GPPTLPSVPQANGVAPVPPRPFANGVAPPAIPALRPPPP 264
>gi|322785970|gb|EFZ12586.1| hypothetical protein SINV_05042 [Solenopsis invicta]
Length = 375
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 161/210 (76%), Positives = 171/210 (81%), Gaps = 38/210 (18%)
Query: 62 VNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVG 121
VNVHMPKDRVTQ HQGYGF+EFMGEEDADYAIKIMNMIKLYGKPIRVNKAS+HQKNLDVG
Sbjct: 1 VNVHMPKDRVTQMHQGYGFVEFMGEEDADYAIKIMNMIKLYGKPIRVNKASAHQKNLDVG 60
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGA 181
ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK
Sbjct: 61 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK---------------------------- 92
Query: 182 NIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
IMRDP+TGNSKGFAFIN+ASF+ASDASI+AM+GQYLCNRPISVSYAFK+D
Sbjct: 93 ----------IMRDPETGNSKGFAFINFASFDASDASIEAMNGQYLCNRPISVSYAFKRD 142
Query: 242 SKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
+KG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 143 AKGERHGSAAERLLAAQNPLSQADRPHQLF 172
>gi|357460829|ref|XP_003600696.1| Splicing factor 3B subunit [Medicago truncatula]
gi|355489744|gb|AES70947.1| Splicing factor 3B subunit [Medicago truncatula]
Length = 379
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 164/276 (59%), Positives = 195/276 (70%), Gaps = 57/276 (20%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT YVG LD ++SE L+WELFVQ+GPVVNV++PKDRVT HQGYGF+EF EEDADYAI
Sbjct: 24 DATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K++NMIKLYGKPIRVNKAS +K+LDVGAN+FIGNLDP+VDEKLLYDTFSAFGVI+ PK
Sbjct: 84 KVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNS+GF FI+Y SFE
Sbjct: 144 --------------------------------------IMRDPDTGNSRGFGFISYDSFE 165
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASD++I+AM+GQYLCNR I+VSYA+KKD+KG+RHG+ AER+LAA NP +Q RPH LFA
Sbjct: 166 ASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFAS 225
Query: 274 APP------------PAPLPP-------PPPPINIM 290
PP PAP+PP PPPI+++
Sbjct: 226 GPPSLPNAPQANGTIPAPVPPRPFANGVAPPPIHVI 261
>gi|356544204|ref|XP_003540544.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 364
Score = 322 bits (826), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 165/281 (58%), Positives = 194/281 (69%), Gaps = 53/281 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT YVG LD ++ E L+WELFVQ+GPVVNV++PKDRVT HQGYGF+EF EEDADYAI
Sbjct: 24 DATAYVGNLDPQICEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K++NMIKLYGKPIRVNKAS +K+LDVGAN+FIGNLDP+VDEKLLYDTFSAFGVI+ PK
Sbjct: 84 KVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNS+GF FI+Y SFE
Sbjct: 144 --------------------------------------IMRDPETGNSRGFGFISYDSFE 165
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASD++I+AM+GQYLCNR I+VSYA+KKD+KG+RHG+ AER+LAA NP +Q RPH LFA
Sbjct: 166 ASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTTQKSRPHTLFAS 225
Query: 274 APPP----------APLPPPP-----PPINIMGLPPPPPSG 299
PP AP+PP P P I L PPPP
Sbjct: 226 GPPTLPSAPQANGVAPVPPRPFVNGVAPAAIPTLRPPPPQA 266
>gi|242039481|ref|XP_002467135.1| hypothetical protein SORBIDRAFT_01g020190 [Sorghum bicolor]
gi|241920989|gb|EER94133.1| hypothetical protein SORBIDRAFT_01g020190 [Sorghum bicolor]
Length = 355
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 158/254 (62%), Positives = 187/254 (73%), Gaps = 38/254 (14%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT YVG LD +VSE L+WELFVQ+GPVVNV++PKDRVT HQGYGF+EF EEDADYAI
Sbjct: 24 DATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+NMIKLYGKPIRVNKAS +K+LDVGAN+FIGNLDP+VDEKLLYDTFSAFGVI+ PK
Sbjct: 84 KILNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNS+GF F++Y SFE
Sbjct: 144 --------------------------------------IMRDPETGNSRGFGFVSYDSFE 165
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
+SD +I+AM+ Q+LCNRPI+VSYA+KKD+KG+RHG+ AERLLAA NP SQ +RPH +FA
Sbjct: 166 SSDQAIEAMNNQHLCNRPITVSYAYKKDTKGERHGTPAERLLAANNPGSQKNRPHTMFAS 225
Query: 274 APPPAPLPPPPPPI 287
PP LP PP+
Sbjct: 226 GPPTQGLPNGGPPV 239
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVV-NVHMPKDRVTQTHQGYGFIEFMGEE 87
+S D A +++G LD V E L+++ F G +V N + +D T +G+GF+ + E
Sbjct: 106 KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYDSFE 165
Query: 88 DADYAIKIMNMIKLYGKPIRVNKA 111
+D AI+ MN L +PI V+ A
Sbjct: 166 SSDQAIEAMNNQHLCNRPITVSYA 189
>gi|338762832|gb|AEI98619.1| hypothetical protein 111O18.6 [Coffea canephora]
Length = 368
Score = 320 bits (821), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 162/274 (59%), Positives = 192/274 (70%), Gaps = 56/274 (20%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT YVG LD +VSE L+WELFVQ+GPVVNV++PKDRVT +HQGYGF+EF EEDADYAI
Sbjct: 24 DATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNSHQGYGFVEFRSEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K++NMIKLYGKPIRVNKAS +K++DVGAN+FIGNLDP+VDEKLLYDTFSAFGVI+ PK
Sbjct: 84 KVLNMIKLYGKPIRVNKASQDKKSVDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNS+GF FI+Y SFE
Sbjct: 144 --------------------------------------IMRDPETGNSRGFGFISYDSFE 165
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNR I+VSYA+KKD+KG+RHG+ AER+LAA NP Q RPH +FA
Sbjct: 166 ASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPNVQKSRPHTMFAS 225
Query: 274 APP------------PAPLPPPP------PPINI 289
PP AP+PP P PP +I
Sbjct: 226 GPPTLQNVAQASANIAAPVPPRPFANGNVPPTSI 259
>gi|255550690|ref|XP_002516394.1| spliceosome associated protein, putative [Ricinus communis]
gi|223544492|gb|EEF46011.1| spliceosome associated protein, putative [Ricinus communis]
Length = 376
Score = 320 bits (820), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 163/263 (61%), Positives = 190/263 (72%), Gaps = 40/263 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT YVG LD +VSE L+WELFVQ+GPVVNV++PKDRVT HQGYGF+EF EEDADYAI
Sbjct: 24 DATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKL+GKPIRVNKAS +K+LDVGAN+FIGNLDP+VDEKLL+DTFSAFGVI+ PK
Sbjct: 84 KIMNMIKLFGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLHDTFSAFGVIVTNPK 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNS+GF FI+Y SF+
Sbjct: 144 --------------------------------------IMRDPETGNSRGFGFISYDSFD 165
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNR I+VSYA+KKD+KG+RHG+ AER+LAA NP SQ RPH LFA
Sbjct: 166 ASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPSSQKSRPHTLFAS 225
Query: 274 APPPAPLPPPPPPINIMGLPPPP 296
PP LP P +G P PP
Sbjct: 226 GPP--TLPSIPQANGTVGAPVPP 246
>gi|357146461|ref|XP_003574000.1| PREDICTED: splicing factor 3B subunit 4-like [Brachypodium
distachyon]
Length = 359
Score = 320 bits (820), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 161/267 (60%), Positives = 190/267 (71%), Gaps = 47/267 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT YVG LD +VSE L+WELFVQ+GPVVNV++PKDRVT HQGYGF+EF EEDADYAI
Sbjct: 24 DATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+NM+KLYGKPIRVNKAS +K+LDVGAN+FIGNLDPEVDEKLLYDTFSAFGVI+ PK
Sbjct: 84 KILNMLKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPEVDEKLLYDTFSAFGVIVTNPK 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNS+GF F++Y SFE
Sbjct: 144 --------------------------------------IMRDPETGNSRGFGFVSYDSFE 165
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
+SD +I+AM+ Q+LCNRPI+VSYA+KKD+KG+RHG+ AERLLAA NP SQ RPH +FA
Sbjct: 166 SSDQAIEAMNNQHLCNRPITVSYAYKKDTKGERHGTPAERLLAANNPGSQKHRPHTMFAT 225
Query: 274 APPP---------APLPPPPPPINIMG 291
APP AP+P P N+ G
Sbjct: 226 APPTQGLQNGGVSAPVPRPFANGNVQG 252
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVV-NVHMPKDRVTQTHQGYGFIEFMGEE 87
+S D A +++G LD +V E L+++ F G +V N + +D T +G+GF+ + E
Sbjct: 106 KSLDVGANLFIGNLDPEVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYDSFE 165
Query: 88 DADYAIKIMNMIKLYGKPIRVNKA 111
+D AI+ MN L +PI V+ A
Sbjct: 166 SSDQAIEAMNNQHLCNRPITVSYA 189
>gi|308081546|ref|NP_001183096.1| uncharacterized protein LOC100501457 [Zea mays]
gi|238009292|gb|ACR35681.1| unknown [Zea mays]
gi|414871228|tpg|DAA49785.1| TPA: hypothetical protein ZEAMMB73_160597 [Zea mays]
Length = 359
Score = 320 bits (820), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 157/254 (61%), Positives = 187/254 (73%), Gaps = 38/254 (14%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT YVG LD +VSE L+WELFVQ+GPVVNV++PKDRVT HQGYGF+EF EEDADYAI
Sbjct: 24 DATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+NMIKLYGKPIRVNKAS +K+LDVGAN+FIGNLDP+VDEKLLYDTFSAFGVI+ PK
Sbjct: 84 KILNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNS+GF F++Y SFE
Sbjct: 144 --------------------------------------IMRDPETGNSRGFGFVSYESFE 165
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
+SD +I+AM+ Q+LCNRPI+VSYA+KKD+KG+RHG+ AERLLA+ NP SQ +RPH +FA
Sbjct: 166 SSDQAIEAMNNQHLCNRPITVSYAYKKDTKGERHGTPAERLLASNNPGSQKNRPHTMFAS 225
Query: 274 APPPAPLPPPPPPI 287
PP LP PP+
Sbjct: 226 GPPTQGLPNGGPPV 239
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVV-NVHMPKDRVTQTHQGYGFIEFMGEE 87
+S D A +++G LD V E L+++ F G +V N + +D T +G+GF+ + E
Sbjct: 106 KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYESFE 165
Query: 88 DADYAIKIMNMIKLYGKPIRVNKA 111
+D AI+ MN L +PI V+ A
Sbjct: 166 SSDQAIEAMNNQHLCNRPITVSYA 189
>gi|297735183|emb|CBI17545.3| unnamed protein product [Vitis vinifera]
Length = 238
Score = 320 bits (820), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 156/251 (62%), Positives = 184/251 (73%), Gaps = 38/251 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT YVG LD +V+E L+WELFVQ+GPVVNV++PKDRVT HQGYGF+EF EEDADYAI
Sbjct: 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K++NMIKLYGKPIRVNKAS +K+LDVGAN+F+GNLDP+VDEKLLYDTFSAFGVI+ PK
Sbjct: 84 KVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNS+GF F++Y SFE
Sbjct: 144 --------------------------------------IMRDPDTGNSRGFGFVSYDSFE 165
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNR I+VSYA+KKD+KG+RHG+ AER+LAA NP + RPH LFA
Sbjct: 166 ASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPSAPKSRPHTLFAS 225
Query: 274 APPPAPLPPPP 284
PP P P P
Sbjct: 226 GPPTLPNPSHP 236
>gi|225430808|ref|XP_002271291.1| PREDICTED: splicing factor 3B subunit 4 [Vitis vinifera]
Length = 373
Score = 320 bits (819), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 161/263 (61%), Positives = 189/263 (71%), Gaps = 40/263 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT YVG LD +V+E L+WELFVQ+GPVVNV++PKDRVT HQGYGF+EF EEDADYAI
Sbjct: 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K++NMIKLYGKPIRVNKAS +K+LDVGAN+F+GNLDP+VDEKLLYDTFSAFGVI+ PK
Sbjct: 84 KVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNS+GF F++Y SFE
Sbjct: 144 --------------------------------------IMRDPDTGNSRGFGFVSYDSFE 165
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNR I+VSYA+KKD+KG+RHG+ AER+LAA NP + RPH LFA
Sbjct: 166 ASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPSAPKSRPHTLFAS 225
Query: 274 APPPAPLPPPPPPINIMGLPPPP 296
PP LP P MG P PP
Sbjct: 226 GPP--TLPNVPQANGNMGAPMPP 246
>gi|222612944|gb|EEE51076.1| hypothetical protein OsJ_31773 [Oryza sativa Japonica Group]
Length = 391
Score = 319 bits (818), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 160/264 (60%), Positives = 190/264 (71%), Gaps = 41/264 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT YVG LD +VSE L+WELFVQ+GPVVNV++PKDRVT HQGYGF+EF EEDADYAI
Sbjct: 24 DATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+NMIKLYGKPIRVNKAS +K+LDVGAN+FIGNLDP+VDEKLLYDTFSAFGVI+ PK
Sbjct: 84 KILNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNS+GF F++Y SFE
Sbjct: 144 --------------------------------------IMRDPETGNSRGFGFVSYDSFE 165
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
+SD +I+AM+ Q+LCNRPI+VSYA+KKD+KG+RHG+ AERLLAA NP SQ +RPH +FA
Sbjct: 166 SSDQAIEAMNNQHLCNRPITVSYAYKKDTKGERHGTPAERLLAANNPGSQKNRPHTMFAS 225
Query: 274 APPPAPL---PPPPPPINIMGLPP 294
PP L P P P + +PP
Sbjct: 226 GPPTQGLANGAPVPRPFSNGAVPP 249
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVV-NVHMPKDRVTQTHQGYGFIEFMGEE 87
+S D A +++G LD V E L+++ F G +V N + +D T +G+GF+ + E
Sbjct: 106 KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYDSFE 165
Query: 88 DADYAIKIMNMIKLYGKPIRVNKA 111
+D AI+ MN L +PI V+ A
Sbjct: 166 SSDQAIEAMNNQHLCNRPITVSYA 189
>gi|115482332|ref|NP_001064759.1| Os10g0457000 [Oryza sativa Japonica Group]
gi|31432465|gb|AAP54095.1| Splicing factor 3B subunit 4, putative, expressed [Oryza sativa
Japonica Group]
gi|113639368|dbj|BAF26673.1| Os10g0457000 [Oryza sativa Japonica Group]
gi|215737182|dbj|BAG96111.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218184664|gb|EEC67091.1| hypothetical protein OsI_33883 [Oryza sativa Indica Group]
Length = 355
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 160/264 (60%), Positives = 190/264 (71%), Gaps = 41/264 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT YVG LD +VSE L+WELFVQ+GPVVNV++PKDRVT HQGYGF+EF EEDADYAI
Sbjct: 24 DATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+NMIKLYGKPIRVNKAS +K+LDVGAN+FIGNLDP+VDEKLLYDTFSAFGVI+ PK
Sbjct: 84 KILNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNS+GF F++Y SFE
Sbjct: 144 --------------------------------------IMRDPETGNSRGFGFVSYDSFE 165
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
+SD +I+AM+ Q+LCNRPI+VSYA+KKD+KG+RHG+ AERLLAA NP SQ +RPH +FA
Sbjct: 166 SSDQAIEAMNNQHLCNRPITVSYAYKKDTKGERHGTPAERLLAANNPGSQKNRPHTMFAS 225
Query: 274 APPPAPL---PPPPPPINIMGLPP 294
PP L P P P + +PP
Sbjct: 226 GPPTQGLANGAPVPRPFSNGAVPP 249
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVV-NVHMPKDRVTQTHQGYGFIEFMGEE 87
+S D A +++G LD V E L+++ F G +V N + +D T +G+GF+ + E
Sbjct: 106 KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYDSFE 165
Query: 88 DADYAIKIMNMIKLYGKPIRVNKA 111
+D AI+ MN L +PI V+ A
Sbjct: 166 SSDQAIEAMNNQHLCNRPITVSYA 189
>gi|168024568|ref|XP_001764808.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684102|gb|EDQ70507.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 414
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 166/281 (59%), Positives = 196/281 (69%), Gaps = 53/281 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT YVG LD +VSE L+WELFVQ+GPVVNV++PKDRVT HQGYGFIEF E+DADYAI
Sbjct: 24 DATAYVGNLDSQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEDDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+NMIKLYGKPIRVNKAS +K+LDVGAN+F+GNLDP+VDEKLLYDTFSAFGVI+ PK
Sbjct: 84 KILNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPD+GNS+GF FI+Y SFE
Sbjct: 144 --------------------------------------IMRDPDSGNSRGFGFISYDSFE 165
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASD++I+AM+GQYLCNR I+VSYA+KKD+KG+RHG+ AER+LA+ NP + RPH LFA
Sbjct: 166 ASDSAIEAMNGQYLCNRAITVSYAYKKDTKGERHGTLAERMLASSNPNTTKSRPHTLFAS 225
Query: 274 APPP--------APLPPPPPPIN-IMGLP------PPPPSG 299
PP LPP PP N MG+P PPP +G
Sbjct: 226 GPPSLVGPPQLGQGLPPAPPQANGNMGMPMNGHMHPPPFAG 266
>gi|449459840|ref|XP_004147654.1| PREDICTED: splicing factor 3B subunit 4-like [Cucumis sativus]
gi|449498825|ref|XP_004160645.1| PREDICTED: splicing factor 3B subunit 4-like [Cucumis sativus]
Length = 379
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 165/263 (62%), Positives = 189/263 (71%), Gaps = 42/263 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT YVG LD +VSE L+WELFVQ+GPVVNV++PKDRVT HQGYGFIEF EEDADYAI
Sbjct: 24 DATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K++NMIKLYGKPIRVNKAS +K+LDVGAN+FIGNLDP+VDEKLLYDTFSAFGVI+ PK
Sbjct: 84 KVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNS+GF FI+Y SFE
Sbjct: 144 --------------------------------------IMRDPDTGNSRGFGFISYDSFE 165
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNR I+VSYA+KKD+KG+RHG+ AER+LAA NP Q RPH LFA
Sbjct: 166 ASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFAS 223
Query: 274 APPPAPLPPPPPPINIMGLPPPP 296
PP LP P +G P PP
Sbjct: 224 GPP--TLPKVAQPNGAIGAPVPP 244
>gi|326519747|dbj|BAK00246.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 368
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 159/259 (61%), Positives = 187/259 (72%), Gaps = 47/259 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT YVG LD +VSE L+WELFVQ+GPVVNV++PKDRVT HQGYGF+EF EEDADYAI
Sbjct: 24 DATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+NM+KLYGKPIRVNKAS +K+LDVGAN+FIGNLDPEVDEKLLYDTFSAFGVI+ PK
Sbjct: 84 KILNMLKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPEVDEKLLYDTFSAFGVIVTNPK 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNS+GF F++Y SFE
Sbjct: 144 --------------------------------------IMRDPETGNSRGFGFVSYDSFE 165
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
+SD +I+AM+ Q+LCNRPI+VSYA+KKD+KG+RHG+ AERLLAA NP SQ RPH +FA
Sbjct: 166 SSDQAIEAMNNQHLCNRPITVSYAYKKDTKGERHGTPAERLLAANNPGSQKHRPHTMFAT 225
Query: 274 APPP---------APLPPP 283
APP AP+P P
Sbjct: 226 APPTQGLQNGGVGAPVPRP 244
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVV-NVHMPKDRVTQTHQGYGFIEFMGEE 87
+S D A +++G LD +V E L+++ F G +V N + +D T +G+GF+ + E
Sbjct: 106 KSLDVGANLFIGNLDPEVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYDSFE 165
Query: 88 DADYAIKIMNMIKLYGKPIRVNKA 111
+D AI+ MN L +PI V+ A
Sbjct: 166 SSDQAIEAMNNQHLCNRPITVSYA 189
>gi|212274429|ref|NP_001130902.1| uncharacterized protein LOC100192006 [Zea mays]
gi|194690404|gb|ACF79286.1| unknown [Zea mays]
gi|413934109|gb|AFW68660.1| hypothetical protein ZEAMMB73_687460 [Zea mays]
Length = 357
Score = 317 bits (812), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 156/254 (61%), Positives = 185/254 (72%), Gaps = 38/254 (14%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT YVG LD +VSE L+WELFVQ+GPVVNV++PKDRVT HQGYGF+EF EEDADYAI
Sbjct: 24 DATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K +NMIKLYGKPIRVNKAS +K+LDVGAN+FIGNLDP+VDEKLLYDTFSAFGVI+ PK
Sbjct: 84 KTLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNS+GF F++Y SFE
Sbjct: 144 --------------------------------------IMRDPETGNSRGFGFVSYESFE 165
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
+SD +I+AM+ Q+LCNRPI+VSYA+KKD+KG+RHG+ AERLLAA NP SQ +RPH +FA
Sbjct: 166 SSDQAIEAMNNQHLCNRPITVSYAYKKDTKGERHGTPAERLLAANNPGSQKNRPHTMFAS 225
Query: 274 APPPAPLPPPPPPI 287
PP P PP+
Sbjct: 226 GPPTQGHPNGGPPV 239
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVV-NVHMPKDRVTQTHQGYGFIEFMGEE 87
+S D A +++G LD V E L+++ F G +V N + +D T +G+GF+ + E
Sbjct: 106 KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYESFE 165
Query: 88 DADYAIKIMNMIKLYGKPIRVNKA 111
+D AI+ MN L +PI V+ A
Sbjct: 166 SSDQAIEAMNNQHLCNRPITVSYA 189
>gi|449281849|gb|EMC88820.1| Splicing factor 3B subunit 4, partial [Columba livia]
Length = 177
Score = 317 bits (811), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 154/215 (71%), Positives = 171/215 (79%), Gaps = 38/215 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 1 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 60
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 61 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 120
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 121 --------------------------------------IMRDPDTGNSKGYAFINFASFD 142
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHG
Sbjct: 143 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHG 177
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 86 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 145
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 146 AAIEAMNGQYLCNRPITVSYA 166
>gi|21593441|gb|AAM65408.1| putative spliceosome associated protein [Arabidopsis thaliana]
Length = 363
Score = 313 bits (803), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 161/266 (60%), Positives = 190/266 (71%), Gaps = 45/266 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD ++SE L+WELFVQ+GPVVNV++PKDRVT HQ YGFIE+ EEDADYAI
Sbjct: 24 DATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K++NMIKL+GKPIRVNKAS +K+LDVGAN+FIGNLDP+VDEKLLYDTFSAFGVI PK
Sbjct: 84 KVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPK 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNS+GF FI+Y SFE
Sbjct: 144 --------------------------------------IMRDPDTGNSRGFGFISYDSFE 165
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I++M GQYL NR I+VSYA+KKD+KG+RHG+ AERLLAA NP +Q RPH LFA
Sbjct: 166 ASDAAIESMTGQYLSNRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAM 225
Query: 274 APPPAPLPPPPPPINIMGLPPPPPSG 299
PP + P +N GLP P +G
Sbjct: 226 GPPSS-----APQVN--GLPRPFANG 244
>gi|15224186|ref|NP_179441.1| splicing factor 3B subunit 4 [Arabidopsis thaliana]
gi|4218014|gb|AAD12222.1| putative spliceosome associated protein [Arabidopsis thaliana]
gi|23297611|gb|AAN12991.1| putative spliceosome-associated protein [Arabidopsis thaliana]
gi|330251682|gb|AEC06776.1| splicing factor 3B subunit 4 [Arabidopsis thaliana]
Length = 363
Score = 313 bits (803), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 161/266 (60%), Positives = 190/266 (71%), Gaps = 45/266 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD ++SE L+WELFVQ+GPVVNV++PKDRVT HQ YGFIE+ EEDADYAI
Sbjct: 24 DATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K++NMIKL+GKPIRVNKAS +K+LDVGAN+FIGNLDP+VDEKLLYDTFSAFGVI PK
Sbjct: 84 KVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPK 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNS+GF FI+Y SFE
Sbjct: 144 --------------------------------------IMRDPDTGNSRGFGFISYDSFE 165
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I++M GQYL NR I+VSYA+KKD+KG+RHG+ AERLLAA NP +Q RPH LFA
Sbjct: 166 ASDAAIESMTGQYLSNRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAM 225
Query: 274 APPPAPLPPPPPPINIMGLPPPPPSG 299
PP + P +N GLP P +G
Sbjct: 226 GPPSS-----APQVN--GLPRPFANG 244
>gi|14334958|gb|AAK59656.1| putative spliceosome associated protein [Arabidopsis thaliana]
Length = 363
Score = 313 bits (801), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 160/266 (60%), Positives = 190/266 (71%), Gaps = 45/266 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD ++SE L+WELFVQ+GPVVNV++PKDRVT HQ YGFIE+ EEDADYAI
Sbjct: 24 DATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K++NMIKL+GKP+RVNKAS +K+LDVGAN+FIGNLDP+VDEKLLYDTFSAFGVI PK
Sbjct: 84 KVLNMIKLHGKPMRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPK 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNS+GF FI+Y SFE
Sbjct: 144 --------------------------------------IMRDPDTGNSRGFGFISYDSFE 165
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I++M GQYL NR I+VSYA+KKD+KG+RHG+ AERLLAA NP +Q RPH LFA
Sbjct: 166 ASDAAIESMTGQYLSNRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAM 225
Query: 274 APPPAPLPPPPPPINIMGLPPPPPSG 299
PP + P +N GLP P +G
Sbjct: 226 GPPSS-----APQVN--GLPRPFANG 244
>gi|167533335|ref|XP_001748347.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773159|gb|EDQ86802.1| predicted protein [Monosiga brevicollis MX1]
Length = 406
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 147/241 (60%), Positives = 186/241 (77%), Gaps = 39/241 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLDDKV E L+WELF+Q+GPVV+VHMPKDRV+ HQ YGF+EF+GE+DA+YA+
Sbjct: 12 DATVYVGGLDDKVDEELVWELFLQAGPVVSVHMPKDRVSGAHQSYGFVEFLGEDDAEYAL 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+NMI +YGKPIRVNK++SH K+++VGAN++IGNL PEVDEKLL+DTFSAFGVILQ PK
Sbjct: 72 KILNMINVYGKPIRVNKSASHSKHMEVGANLYIGNLAPEVDEKLLFDTFSAFGVILQHPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+MRD +TG+SKGFAFINYA+FE
Sbjct: 132 --------------------------------------VMRDLETGHSKGFAFINYATFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADR-PHQLFA 272
ASDA+I AMH QYLCNRPI+V+YA+KKD++G+RHGS AER+LAAQNP+ ++ + P+Q F+
Sbjct: 154 ASDAAIKAMHQQYLCNRPINVTYAYKKDTQGERHGSQAERMLAAQNPIIKSQQTPNQFFS 213
Query: 273 D 273
D
Sbjct: 214 D 214
>gi|297836592|ref|XP_002886178.1| hypothetical protein ARALYDRAFT_480759 [Arabidopsis lyrata subsp.
lyrata]
gi|297332018|gb|EFH62437.1| hypothetical protein ARALYDRAFT_480759 [Arabidopsis lyrata subsp.
lyrata]
Length = 364
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 160/266 (60%), Positives = 188/266 (70%), Gaps = 45/266 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVG LD ++SE L+WELFVQ+GPVVNV++PKDRVT HQ YGFIE+ EEDADYAI
Sbjct: 24 DATVYVGNLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K++NMIK++GKPIRVNKAS +K+LDVGAN+FIGNLDP+VDEKLLYDTFSAFGVI PK
Sbjct: 84 KVLNMIKVHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPK 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNS+GF FI+Y SFE
Sbjct: 144 --------------------------------------IMRDPDTGNSRGFGFISYDSFE 165
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM GQYL NR I+VSYA+KKD+KG+RHG+ AERLLAA NP +Q RPH LFA
Sbjct: 166 ASDAAIEAMTGQYLSNRQITVSYAYKKDTKGERHGTPAERLLAATNPSAQKSRPHTLFAS 225
Query: 274 APPPAPLPPPPPPINIMGLPPPPPSG 299
PP P +N GLP P +G
Sbjct: 226 GPPSN-----APQVN--GLPRPFANG 244
>gi|449681524|ref|XP_002157695.2| PREDICTED: splicing factor 3B subunit 4-like [Hydra magnipapillata]
Length = 328
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 153/214 (71%), Positives = 168/214 (78%), Gaps = 38/214 (17%)
Query: 66 MPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIF 125
MPKDR+TQ HQGYGFIEFM EEDADYAIKI+NMIK+YGKPIRVNKAS+H KNLDVGANIF
Sbjct: 1 MPKDRITQNHQGYGFIEFMSEEDADYAIKILNMIKVYGKPIRVNKASAHNKNLDVGANIF 60
Query: 126 IGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFI 185
IGNLDP++DEKLLYDTFSAFGVIL TPK
Sbjct: 61 IGNLDPDIDEKLLYDTFSAFGVILTTPK-------------------------------- 88
Query: 186 GNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
IMRDP+TGNSKGFAFIN+ASFEASDA+IDAM+GQYL NRPISVSY+FKKD+KG+
Sbjct: 89 ------IMRDPETGNSKGFAFINFASFEASDAAIDAMNGQYLSNRPISVSYSFKKDTKGE 142
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFADAPPPAP 279
RHGSAAERLLAA NPL+Q+DRPHQLFADAPP P
Sbjct: 143 RHGSAAERLLAASNPLTQSDRPHQLFADAPPMLP 176
>gi|55960587|emb|CAI12647.1| splicing factor 3b, subunit 4, 49kDa [Homo sapiens]
gi|55960979|emb|CAI12553.1| splicing factor 3b, subunit 4, 49kDa [Homo sapiens]
Length = 190
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 152/206 (73%), Positives = 164/206 (79%), Gaps = 38/206 (18%)
Query: 66 MPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIF 125
MPKDRVT HQGYGF+EF+ EEDADYAIKIMNMIKLYGKPIRVNKAS+H KNLDVGANIF
Sbjct: 1 MPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIF 60
Query: 126 IGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFI 185
IGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 61 IGNLDPEIDEKLLYDTFSAFGVILQTPK-------------------------------- 88
Query: 186 GNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
IMRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 89 ------IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 142
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLF 271
RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 143 RHGSAAERLLAAQNPLSQADRPHQLF 168
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 110/141 (78%), Positives = 119/141 (84%), Gaps = 21/141 (14%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 29 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 88
Query: 193 -MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA 251
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAA
Sbjct: 89 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAA 148
Query: 252 ERLLAAQNPLSQADRPHQLFA 272
ERLLAAQNPLSQADRPHQLFA
Sbjct: 149 ERLLAAQNPLSQADRPHQLFA 169
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 54 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 113
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 114 AAIEAMNGQYLCNRPITVSYA 134
>gi|159476562|ref|XP_001696380.1| nuclear pre-mRNA splicing factor, component of splicing factor 3b
[Chlamydomonas reinhardtii]
gi|158282605|gb|EDP08357.1| nuclear pre-mRNA splicing factor, component of splicing factor 3b
[Chlamydomonas reinhardtii]
Length = 396
Score = 306 bits (784), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 152/262 (58%), Positives = 183/262 (69%), Gaps = 50/262 (19%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+YVG LD + +E L+WELF Q+GPVVNV+MPKDRVT HQGYGF+EF GEEDADYAI
Sbjct: 30 EATVYVGNLDVQTTEELVWELFTQAGPVVNVYMPKDRVTNAHQGYGFVEFKGEEDADYAI 89
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K++NM+K+YGK IRVNKAS ++ DVGAN+FIGNLDP+VDEKLLYDTFSAFGVI+ TPK
Sbjct: 90 KVLNMVKVYGKAIRVNKASQDKRQADVGANLFIGNLDPDVDEKLLYDTFSAFGVIVNTPK 149
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNS+GF F++Y FE
Sbjct: 150 --------------------------------------IMRDPDTGNSRGFGFVSYDCFE 171
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ--NPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNR I+VSYAFKKD+KG+RHG+ AERLLAAQ + RP+ LF
Sbjct: 172 ASDAAIEAMNGQYLCNRAITVSYAFKKDTKGERHGTPAERLLAAQMREKAAAQSRPNMLF 231
Query: 272 ADAP----------PPAPLPPP 283
A+ P PPAP+ P
Sbjct: 232 AEGPKLKGQQVGQAPPAPVMAP 253
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +++G LD V E L+++ F G +VN + +D T +G+GF+ + E +D
Sbjct: 115 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVNTPKIMRDPDTGNSRGFGFVSYDCFEASD 174
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L + I V+ A
Sbjct: 175 AAIEAMNGQYLCNRAITVSYA 195
>gi|384250449|gb|EIE23928.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 358
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 155/278 (55%), Positives = 190/278 (68%), Gaps = 48/278 (17%)
Query: 4 GREIQAGISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVN 63
G I AG+ + +Q + + DAT+YVG LD ++SE L+WELFVQSGPVVN
Sbjct: 6 GGRITAGVGANLIGQHAQDRNQ--------DATVYVGNLDVQLSEELVWELFVQSGPVVN 57
Query: 64 VHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGAN 123
V++PKDRVT HQGYGF+EF E+DADYAIKI+NMIK+YGKPIRVNKAS +K DVGAN
Sbjct: 58 VYLPKDRVTSQHQGYGFVEFKSEDDADYAIKILNMIKVYGKPIRVNKASQDKKTQDVGAN 117
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+FIGN+DP+VDEKLLYDTFSAFG+I+QTPK
Sbjct: 118 LFIGNIDPDVDEKLLYDTFSAFGMIIQTPK------------------------------ 147
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
IMRDP+TG +KGF F++Y SFEASDA+I+AM+GQ+LCNRPI+VS+A+KKD+K
Sbjct: 148 --------IMRDPETGATKGFGFVSYDSFEASDAAIEAMNGQFLCNRPITVSFAYKKDTK 199
Query: 244 GDRHGSAAERLLAAQ--NPLSQADRPHQLFADAPPPAP 279
G+RHGS AER LA Q + A RPH LFA P P
Sbjct: 200 GERHGSEAERQLATQQRTKAAAASRPHTLFASGPRQRP 237
>gi|351714226|gb|EHB17145.1| Splicing factor 3B subunit 4 [Heterocephalus glaber]
Length = 297
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 145/210 (69%), Positives = 162/210 (77%), Gaps = 38/210 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+ PVVN HMPKDRVT HQGYGF+EF+ EEDADY I
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQARPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYDI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLD+GANIFIGNLDPE+DEKLLYDTFS FGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDIGANIFIGNLDPEIDEKLLYDTFSTFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSK +AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKSYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSK
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T + Y FI F + +D
Sbjct: 97 DIGANIFIGNLDPEIDEKLLYDTFSTFGVILQTPKIMRDPDTGNSKSYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>gi|255077948|ref|XP_002502554.1| predicted protein [Micromonas sp. RCC299]
gi|226517819|gb|ACO63812.1| predicted protein [Micromonas sp. RCC299]
Length = 325
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 139/239 (58%), Positives = 176/239 (73%), Gaps = 39/239 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+YVG LD +V+E ++WE+FVQ+GPVVNV+MPKDRV+ HQGY F+E+ GEEDADYAI
Sbjct: 30 EATVYVGNLDPQVTEEIVWEVFVQAGPVVNVYMPKDRVSNAHQGYAFVEYRGEEDADYAI 89
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K++NMIKL+GKPIR NKAS +K+ DVGAN+F+GNLDP++DEKLLYDTFSAFGV++ TPK
Sbjct: 90 KVLNMIKLFGKPIRANKASVDKKSTDVGANLFVGNLDPDMDEKLLYDTFSAFGVVITTPK 149
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNS+GF F++Y SFE
Sbjct: 150 --------------------------------------IMRDPDTGNSRGFGFVSYDSFE 171
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ-NPLSQADRPHQLF 271
ASDA+I+AM+GQ+LCNRPISV+YA+KKD+ G+RHG+ AERLLAA + RPH +F
Sbjct: 172 ASDAAIEAMNGQFLCNRPISVTYAYKKDTNGERHGTPAERLLAANMEKKTTTHRPHTMF 230
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEE 87
+S D A ++VG LD + E L+++ F G V+ + +D T +G+GF+ + E
Sbjct: 112 KSTDVGANLFVGNLDPDMDEKLLYDTFSAFGVVITTPKIMRDPDTGNSRGFGFVSYDSFE 171
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKN 117
+D AI+ MN L +PI V A N
Sbjct: 172 ASDAAIEAMNGQFLCNRPISVTYAYKKDTN 201
>gi|325186713|emb|CCA21261.1| RNA polymerase Ispecific transcription initiation factor rrn3
putative [Albugo laibachii Nc14]
Length = 988
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 155/311 (49%), Positives = 191/311 (61%), Gaps = 61/311 (19%)
Query: 15 CLQSLSQ---TKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRV 71
C+ + Q T + E + DATIY+G LDDKVSE L+WEL +Q+G VVNVHMP+D+V
Sbjct: 694 CMLAAKQMQLTNMSAAIEQRNQDATIYIGNLDDKVSEELLWELMLQAGSVVNVHMPRDKV 753
Query: 72 TQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 131
T HQ YGF+EF EE A+YAIKIMNMI++YGKPIRV KAS +K LD+GAN+FIGNLDP
Sbjct: 754 TTNHQNYGFVEFRTEECAEYAIKIMNMIQVYGKPIRVKKASQDKKTLDIGANLFIGNLDP 813
Query: 132 EVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPE 191
EVDEKLLYDTFSAFG I++TPK
Sbjct: 814 EVDEKLLYDTFSAFGGIIETPK-------------------------------------- 835
Query: 192 IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA 251
IMRDPDT +S+GF FI++ +FEASD +I+ M+ QYLCNR I V YAFKKDS +RHGS A
Sbjct: 836 IMRDPDTKHSRGFGFISFDAFEASDLAIECMNAQYLCNRQIVVQYAFKKDSNNERHGSQA 895
Query: 252 ERLLAAQNPLSQADRPHQLFADAPPPAP-----LPPP-------------PPPINIMGLP 293
ERLLA NP +PH FA A P + PP + +MG+
Sbjct: 896 ERLLAQSNP--NKLKPHTRFAFAMPDGMNGMLGMQPPQHHMGYMTQPGTMQSNMGVMGMV 953
Query: 294 PPPPSGLRASA 304
PPPP+ + +A
Sbjct: 954 PPPPTPMSVAA 964
>gi|345312295|ref|XP_001516274.2| PREDICTED: splicing factor 3B subunit 4-like [Ornithorhynchus
anatinus]
Length = 372
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 144/201 (71%), Positives = 160/201 (79%), Gaps = 38/201 (18%)
Query: 71 VTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLD 130
+++ +QGYGF+EF+ EEDADYAIKIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLD
Sbjct: 120 ISERNQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLD 179
Query: 131 PEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 190
PE+DEKLLYDTFSAFGVILQTPK
Sbjct: 180 PEIDEKLLYDTFSAFGVILQTPK------------------------------------- 202
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA 250
IMRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSA
Sbjct: 203 -IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSA 261
Query: 251 AERLLAAQNPLSQADRPHQLF 271
AERLLAAQNPLSQADRPHQLF
Sbjct: 262 AERLLAAQNPLSQADRPHQLF 282
Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 110/141 (78%), Positives = 119/141 (84%), Gaps = 21/141 (14%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 143 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 202
Query: 193 -MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA 251
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAA
Sbjct: 203 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAA 262
Query: 252 ERLLAAQNPLSQADRPHQLFA 272
ERLLAAQNPLSQADRPHQLFA
Sbjct: 263 ERLLAAQNPLSQADRPHQLFA 283
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 168 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 227
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 228 AAIEAMNGQYLCNRPITVSYA 248
>gi|303275187|ref|XP_003056892.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461244|gb|EEH58537.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 302
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 139/243 (57%), Positives = 178/243 (73%), Gaps = 39/243 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVG LD +E ++WE+FVQ+GPVVNV++PKDRV+ HQGYGF+EF EEDADYAI
Sbjct: 7 DATIYVGNLDLACTEEILWEVFVQAGPVVNVYVPKDRVSNAHQGYGFVEFANEEDADYAI 66
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K++NMIKL+GKP+RVNKAS +K+ DVGAN+F+GNLD E+DEKLLYDTFSAFGV++ TPK
Sbjct: 67 KVLNMIKLHGKPVRVNKASQDKKSNDVGANLFVGNLDSELDEKLLYDTFSAFGVVITTPK 126
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPD+GNS+GF F++Y SFE
Sbjct: 127 --------------------------------------IMRDPDSGNSRGFGFVSYDSFE 148
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQAD-RPHQLFA 272
A+DA+I+AM+GQ+LCNRPISV++A+KKD++G+RHG+ AER+LAA S A RPH +F+
Sbjct: 149 AADAAIEAMNGQFLCNRPISVTFAYKKDTRGERHGTPAERMLAANMERSVATHRPHTMFS 208
Query: 273 DAP 275
P
Sbjct: 209 AGP 211
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEE 87
+S D A ++VG LD ++ E L+++ F G V+ + +D + +G+GF+ + E
Sbjct: 89 KSNDVGANLFVGNLDSELDEKLLYDTFSAFGVVITTPKIMRDPDSGNSRGFGFVSYDSFE 148
Query: 88 DADYAIKIMNMIKLYGKPIRVNKA 111
AD AI+ MN L +PI V A
Sbjct: 149 AADAAIEAMNGQFLCNRPISVTFA 172
>gi|440797982|gb|ELR19056.1| spliceosomal protein, putative [Acanthamoeba castellanii str. Neff]
Length = 316
Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 146/247 (59%), Positives = 175/247 (70%), Gaps = 41/247 (16%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E + DAT+YVG LD +VSE L+WEL +QSGPVVNV++PKD++T HQGYGF+EF EED
Sbjct: 5 EERNQDATVYVGELDSRVSEALLWELMLQSGPVVNVYIPKDKLTNLHQGYGFVEFATEED 64
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
A+YAIKIMNMIKLYGKP+RVNKA K +DVGAN+FIGNLD EVDEKLLYDTFSAFGVI
Sbjct: 65 AEYAIKIMNMIKLYGKPLRVNKAKRDGKTVDVGANLFIGNLDAEVDEKLLYDTFSAFGVI 124
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFIN 208
+ TPK IMRDP+TG S+GF F++
Sbjct: 125 ITTPK--------------------------------------IMRDPETGESRGFGFVS 146
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK-GDRHGSAAERLLAAQNP--LSQAD 265
+ SFE+SDA+I++M+ QYLCNR I+VSYA KKDSK G+RHGSAAERLLAA NP
Sbjct: 147 FDSFESSDAAIESMNNQYLCNRAITVSYAIKKDSKTGERHGSAAERLLAANNPARFVTQT 206
Query: 266 RPHQLFA 272
RP+ +FA
Sbjct: 207 RPNTMFA 213
>gi|323451637|gb|EGB07513.1| hypothetical protein AURANDRAFT_59062 [Aureococcus anophagefferens]
Length = 350
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 136/250 (54%), Positives = 174/250 (69%), Gaps = 40/250 (16%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E + DAT YVG LD++++E L+WE+ +Q+GP+ NVH+P+D+VT +HQGYGF+EF EED
Sbjct: 7 EQRNQDATCYVGNLDEQLTEELLWEMMLQAGPIGNVHLPRDKVTGSHQGYGFVEFRSEED 66
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
ADYA+K+MNM+KL+GKP+RVNKAS +K L+VGAN+F+G LD +VDEKLLYDTFSAFG I
Sbjct: 67 ADYALKVMNMVKLFGKPLRVNKASQDKKTLEVGANLFVGGLDVDVDEKLLYDTFSAFGTI 126
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFIN 208
+TPK IMRDPDTGNSKGF F++
Sbjct: 127 TETPK--------------------------------------IMRDPDTGNSKGFGFVS 148
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPH 268
Y SFEASD +I+ MH Q+LCN+ + V YAFK+DSK +RHGS AERLLAA NP+S +PH
Sbjct: 149 YDSFEASDLAIECMHNQFLCNKQVQVGYAFKRDSKTERHGSQAERLLAANNPMSA--KPH 206
Query: 269 QLFADAPPPA 278
+F P A
Sbjct: 207 AMFGTGPGDA 216
>gi|47229364|emb|CAF99352.1| unnamed protein product [Tetraodon nigroviridis]
Length = 379
Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 154/260 (59%), Positives = 176/260 (67%), Gaps = 46/260 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQG EDA
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGEQLFHTDNTEDA---- 67
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
++ + + VN+ + H G F+ D + K
Sbjct: 68 ----CVRFQKRLLYVNETNVHILFSGYGFVEFLSEEDADY-----------------AIK 106
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI--------------------- 192
IMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 107 IMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKI 166
Query: 193 MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAE
Sbjct: 167 MRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAE 226
Query: 253 RLLAAQNPLSQADRPHQLFA 272
RLLAAQNPLSQADRPHQLFA
Sbjct: 227 RLLAAQNPLSQADRPHQLFA 246
>gi|320164028|gb|EFW40927.1| splicing factor 3B subunit 4 [Capsaspora owczarzaki ATCC 30864]
Length = 283
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 142/247 (57%), Positives = 177/247 (71%), Gaps = 41/247 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT YVG LDD+V++ L+WELF+Q+GPV +V +PKDRV+ QGYGF+E+ EEDA+YA
Sbjct: 11 DATCYVGNLDDRVNDRLLWELFLQAGPVAHVFIPKDRVSGLQQGYGFVEYPTEEDAEYAT 70
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+NMIKL+GKPIRV++ S+ +K++D+GAN+FIGNLD EVDEK+L+DTFSAFGVIL TPK
Sbjct: 71 KILNMIKLFGKPIRVSR-STDRKDIDIGANLFIGNLDTEVDEKMLFDTFSAFGVILHTPK 129
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRD GN +GF F+N+ASFE
Sbjct: 130 --------------------------------------IMRDQQNGNPRGFGFVNFASFE 151
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM+GQYLCNR ISV+YAFKKD KG+RHG+AAERLLAA NP S +PHQ FA+
Sbjct: 152 ASDAAIEAMNGQYLCNRQISVTYAFKKDMKGERHGTAAERLLAASNPFSNVSKPHQRFAE 211
Query: 274 APPPAPL 280
P A L
Sbjct: 212 --PQAQL 216
>gi|224094731|ref|XP_002310211.1| predicted protein [Populus trichocarpa]
gi|222853114|gb|EEE90661.1| predicted protein [Populus trichocarpa]
Length = 184
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 139/218 (63%), Positives = 164/218 (75%), Gaps = 38/218 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT YVG LD +VSE L+WELFVQ+GPVVNV++PKDRVT HQGYGF+EF EEDADYAI
Sbjct: 5 DATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 64
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K++NMIKLYGKPIRVNKAS +K+LDVGAN+FIGNLDP+VDEKLL+DTFSAFGVI+ PK
Sbjct: 65 KVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLHDTFSAFGVIVTNPK 124
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TGNS+GF FI+Y SFE
Sbjct: 125 --------------------------------------IMRDPETGNSRGFGFISYDSFE 146
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA 251
ASDA+I+AM+GQYLCNR I+VSYA+KKD+KG+RHG+ A
Sbjct: 147 ASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPA 184
>gi|297831910|ref|XP_002883837.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329677|gb|EFH60096.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 365
Score = 283 bits (723), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 142/242 (58%), Positives = 171/242 (70%), Gaps = 38/242 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVG L ++SE L+ ELFVQ+GPVV+V +PKD+VT Q +GF++F EEDADYAI
Sbjct: 24 DATIYVGNLSPQLSEDLLLELFVQAGPVVSVFIPKDKVTNLQQTFGFVQFRNEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K+ NMIKLYG+PIRV KAS +K+LDVGAN+FIGNLDP+VDEK+LYDTFSAFG++ PK
Sbjct: 84 KVYNMIKLYGEPIRVKKASQDKKSLDVGANLFIGNLDPDVDEKMLYDTFSAFGMVADHPK 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGN +GF FI+Y SFE
Sbjct: 144 --------------------------------------IMRDPDTGNPRGFGFISYDSFE 165
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I+AM GQYL +R I+VSYA+KKD+KG+RHG+ AERLLAA NP SQ RPH LFA
Sbjct: 166 ASDAAIEAMSGQYLSSRQITVSYAYKKDTKGERHGTQAERLLAATNPSSQRSRPHTLFAS 225
Query: 274 AP 275
P
Sbjct: 226 GP 227
>gi|299117359|emb|CBN75315.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 529
Score = 280 bits (715), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 136/247 (55%), Positives = 167/247 (67%), Gaps = 40/247 (16%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E + DAT Y G LD V+E L+WEL +Q+GPV NVHMPKD++T HQG+GF+EF E+D
Sbjct: 6 EQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDD 65
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
A+YAIKIMNM+KL+GKP+RVNKAS +K DVGAN+FIG LDP+VDEK+LYDTFSAFG I
Sbjct: 66 AEYAIKIMNMVKLFGKPLRVNKASQDRKANDVGANLFIGQLDPDVDEKMLYDTFSAFGFI 125
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFIN 208
QTPK +MRDPDTG SKG+ F++
Sbjct: 126 TQTPK--------------------------------------VMRDPDTGMSKGYGFVS 147
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPH 268
Y FEASD +I+ MH QYLCNR ISV YA+KKD++G+RHG AERLLA+ NP + H
Sbjct: 148 YDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNP--SKFKVH 205
Query: 269 QLFADAP 275
LF+ AP
Sbjct: 206 TLFSVAP 212
>gi|145347251|ref|XP_001418087.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578315|gb|ABO96380.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 319
Score = 279 bits (714), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 137/252 (54%), Positives = 174/252 (69%), Gaps = 39/252 (15%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G + +AT+YVG LD +V+E ++WELF+Q+GPV NV++PKDRVT THQGYGF+EF EE
Sbjct: 22 GADRNAEATVYVGNLDPQVTEEVLWELFLQAGPVTNVYVPKDRVTSTHQGYGFVEFRNEE 81
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
DA+Y IKI+NM+KL+GKPI+VNK+ +++ +VGAN+FIGNLDP++DEKLLYDTFSAFGV
Sbjct: 82 DAEYGIKILNMVKLFGKPIKVNKSVGDRRD-EVGANLFIGNLDPDIDEKLLYDTFSAFGV 140
Query: 148 ILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFI 207
++ TPK IMRDPD G SKGF F+
Sbjct: 141 VINTPK--------------------------------------IMRDPDNGASKGFGFV 162
Query: 208 NYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRP 267
Y SFEASDA+I+AM+GQ+LCN+ I+V YA+KKDSKG+RHGS AERLLA RP
Sbjct: 163 AYDSFEASDAAIEAMNGQFLCNKQINVQYAYKKDSKGERHGSQAERLLAQSIERPTMVRP 222
Query: 268 HQLFADAPPPAP 279
H LF+ P P
Sbjct: 223 HTLFSAGPSSTP 234
>gi|307110375|gb|EFN58611.1| hypothetical protein CHLNCDRAFT_10145, partial [Chlorella
variabilis]
Length = 329
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 134/226 (59%), Positives = 165/226 (73%), Gaps = 38/226 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT YVG +D + +E L+WELFVQ+GPVVNV++PKDRVT HQ YGF+EF EEDADYAI
Sbjct: 21 EATCYVGNIDPQANEELIWELFVQAGPVVNVYLPKDRVTNEHQSYGFVEFRSEEDADYAI 80
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+NM+K+YGKP+RVNKA+ + DVGAN+FIG LDPEVDEKLLYDTFSAFGVI+ PK
Sbjct: 81 KILNMVKVYGKPLRVNKAAQDRNTADVGANLFIGGLDPEVDEKLLYDTFSAFGVIVNNPK 140
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTG +KGF F+++ SFE
Sbjct: 141 --------------------------------------IMRDPDTGLTKGFGFLSFDSFE 162
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
ASDA+++AM+GQYL NRP+S+SYAFKKD+KG+RHG+ AERLLAAQ+
Sbjct: 163 ASDAALEAMNGQYLMNRPLSISYAFKKDTKGERHGTPAERLLAAQH 208
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEED 88
+ D A +++GGLD +V E L+++ F G +VN + +D T +G+GF+ F E
Sbjct: 104 TADVGANLFIGGLDPEVDEKLLYDTFSAFGVIVNNPKIMRDPDTGLTKGFGFLSFDSFEA 163
Query: 89 ADYAIKIMNMIKLYGKPIRVNKA 111
+D A++ MN L +P+ ++ A
Sbjct: 164 SDAALEAMNGQYLMNRPLSISYA 186
>gi|384494999|gb|EIE85490.1| hypothetical protein RO3G_10200 [Rhizopus delemar RA 99-880]
Length = 246
Score = 276 bits (707), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 141/246 (57%), Positives = 175/246 (71%), Gaps = 39/246 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD++ +E+L+WEL +Q+GPVVNVH+PKDRVTQTHQ YGF+EF+ EEDADYA+
Sbjct: 10 EATVYIGNLDERCTESLIWELMLQAGPVVNVHLPKDRVTQTHQNYGFVEFLTEEDADYAM 69
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN ++LYGKP+RVNKA+S +KNLDVGA +FIGNLDPEVDEK+LYDTFSAFG+I+ TP+
Sbjct: 70 KIMNQVRLYGKPVRVNKATSDRKNLDVGATLFIGNLDPEVDEKILYDTFSAFGLIVNTPR 129
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RDPDTG KGF FI+Y +FE
Sbjct: 130 --------------------------------------ISRDPDTGALKGFGFISYDNFE 151
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
+SDA+I+AM GQYL N+ I+VSYAFKKD KG+RHGSAAER L A P++LFA
Sbjct: 152 SSDAAIEAMDGQYLMNKQITVSYAFKKDGKGERHGSAAER-LLAAEARKHTQMPNRLFAG 210
Query: 274 APPPAP 279
P AP
Sbjct: 211 GPGMAP 216
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D AT+++G LD +V E ++++ F G +VN + +D T +G+GFI + E +D
Sbjct: 95 DVGATLFIGNLDPEVDEKILYDTFSAFGLIVNTPRISRDPDTGALKGFGFISYDNFESSD 154
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ M+ L K I V+ A
Sbjct: 155 AAIEAMDGQYLMNKQITVSYA 175
>gi|328767802|gb|EGF77850.1| hypothetical protein BATDEDRAFT_33617 [Batrachochytrium
dendrobatidis JAM81]
Length = 308
Score = 276 bits (707), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 134/247 (54%), Positives = 177/247 (71%), Gaps = 38/247 (15%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E + +A++YVG ++D+ +++L+WELF+Q+GPVVNV++PKDRVTQ HQGYGF+EFM E+D
Sbjct: 5 EDRNKEASVYVGNIEDRATDSLIWELFLQAGPVVNVYLPKDRVTQMHQGYGFVEFMTEQD 64
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
A+YA K+MNM++LYGKP+RVNKA+S + LDVGA +FI NLD VDEK LYDTFSAFG+I
Sbjct: 65 AEYASKVMNMVRLYGKPLRVNKATSDKMALDVGATLFISNLDMTVDEKALYDTFSAFGMI 124
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFIN 208
TPK I R+P+TG SKG+ F++
Sbjct: 125 ASTPK--------------------------------------ISRNPETGESKGYGFVS 146
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPH 268
+++FEASDA+I+AM+GQ+L NR I+VSYA KKD KG+RHGSAAERLLAAQ+ + A P+
Sbjct: 147 FSTFEASDAAIEAMNGQFLANRAIAVSYALKKDGKGERHGSAAERLLAAQSGKTTALVPN 206
Query: 269 QLFADAP 275
Q FAD P
Sbjct: 207 QNFADIP 213
>gi|422295420|gb|EKU22719.1| splicing factor 3B subunit 4 [Nannochloropsis gaditana CCMP526]
Length = 274
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 141/270 (52%), Positives = 173/270 (64%), Gaps = 46/270 (17%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E + DAT+Y GGLD+KV+E L+WEL GPVV+VHMP+D+VT HQ +GF+EF EED
Sbjct: 7 EQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEED 66
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
ADYA+KIMNM+++YGKP+RVNKAS +K +DVGAN+FIGNL EVDEK LYDTFSAFG I
Sbjct: 67 ADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGI 126
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFIN 208
Q PK +M DPDTG++KGF F++
Sbjct: 127 TQPPK--------------------------------------VMFDPDTGHTKGFGFVS 148
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPH 268
+ SFEA+D +I+ M+G YL RPI V YA+KKDSKG+RHGS AERLLAA N + + H
Sbjct: 149 FDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAH 208
Query: 269 QLFADAPPPAPLPPPPPPINIMGLPPPPPS 298
LFA P MG PPPPPS
Sbjct: 209 TLFATGPGQIGTG--------MGAPPPPPS 230
>gi|384500250|gb|EIE90741.1| hypothetical protein RO3G_15452 [Rhizopus delemar RA 99-880]
Length = 246
Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 137/245 (55%), Positives = 175/245 (71%), Gaps = 39/245 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+YVG LD++ +E+L+WEL +Q+GPVVNVH+PKDRVTQTHQ YGF+EF+ EEDADYA+
Sbjct: 10 EATVYVGNLDERCTESLIWELMLQAGPVVNVHLPKDRVTQTHQNYGFVEFLTEEDADYAM 69
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
++MN ++LYGKP+RVNKA+S +KNLDVGA +FIGNLDPEVDEKLLYDTFSAFG+I+ TP+
Sbjct: 70 RVMNQVRLYGKPVRVNKATSDRKNLDVGATLFIGNLDPEVDEKLLYDTFSAFGLIVNTPR 129
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+ RDPDTG KGF FI++ +FE
Sbjct: 130 --------------------------------------VSRDPDTGALKGFGFISFDNFE 151
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
+SDA+I+AM GQYL N+ I++SYA+KKD KG+RHGSAAER L A P+QL+A
Sbjct: 152 SSDAAIEAMDGQYLMNKQITISYAYKKDGKGERHGSAAER-LLAAEARKNVQMPNQLYAS 210
Query: 274 APPPA 278
PP A
Sbjct: 211 GPPMA 215
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D AT+++G LD +V E L+++ F G +VN + +D T +G+GFI F E +D
Sbjct: 95 DVGATLFIGNLDPEVDEKLLYDTFSAFGLIVNTPRVSRDPDTGALKGFGFISFDNFESSD 154
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ M+ L K I ++ A
Sbjct: 155 AAIEAMDGQYLMNKQITISYA 175
>gi|422292932|gb|EKU20233.1| splicing factor 3B subunit 4, partial [Nannochloropsis gaditana
CCMP526]
Length = 301
Score = 274 bits (700), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 141/270 (52%), Positives = 173/270 (64%), Gaps = 46/270 (17%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E + DAT+Y GGLD+KV+E L+WEL GPVV+VHMP+D+VT HQ +GF+EF EED
Sbjct: 7 EQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEED 66
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
ADYA+KIMNM+++YGKP+RVNKAS +K +DVGAN+FIGNL EVDEK LYDTFSAFG I
Sbjct: 67 ADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGI 126
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFIN 208
Q PK +M DPDTG++KGF F++
Sbjct: 127 TQPPK--------------------------------------VMFDPDTGHTKGFGFVS 148
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPH 268
+ SFEA+D +I+ M+G YL RPI V YA+KKDSKG+RHGS AERLLAA N + + H
Sbjct: 149 FDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAH 208
Query: 269 QLFADAPPPAPLPPPPPPINIMGLPPPPPS 298
LFA P MG PPPPPS
Sbjct: 209 TLFATGPGQIGTG--------MGAPPPPPS 230
>gi|449543395|gb|EMD34371.1| hypothetical protein CERSUDRAFT_140831 [Ceriporiopsis subvermispora
B]
Length = 323
Score = 270 bits (690), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 137/263 (52%), Positives = 172/263 (65%), Gaps = 49/263 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD++ S+ L+WEL +Q+GPVVNVH+PKDR++ HQGYGF EF+ EEDA+YA
Sbjct: 11 EATVYLGNLDERCSDALIWELMLQAGPVVNVHLPKDRISMAHQGYGFCEFLTEEDAEYAC 70
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKL+GKPIRVNKASS +K LDVGAN+FIGNLD VDE+LLYDTFSAFGV+ T K
Sbjct: 71 KIMNQIKLWGKPIRVNKASSDKKQLDVGANLFIGNLDENVDERLLYDTFSAFGVMATTAK 130
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RDP TG SKG+ F++Y FE
Sbjct: 131 --------------------------------------IARDPSTGKSKGYGFVSYTDFE 152
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
+SDA++++M+GQ+L N+ I+V YAFKKD KG+RHG+ AERLLAA QA + + L
Sbjct: 153 SSDAAVESMNGQFLMNKAITVQYAFKKDGKGERHGTPAERLLAA-----QARKNNAL--- 204
Query: 274 APPPAPLPPPPPPINIMGLPPPP 296
P PPP PI PP P
Sbjct: 205 ---PVSARPPPAPIAFGAHPPMP 224
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +++G LD+ V E L+++ F G + + +D T +GYGF+ + E +D
Sbjct: 96 DVGANLFIGNLDENVDERLLYDTFSAFGVMATTAKIARDPSTGKSKGYGFVSYTDFESSD 155
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
A++ MN L K I V A
Sbjct: 156 AAVESMNGQFLMNKAITVQYA 176
>gi|403417817|emb|CCM04517.1| predicted protein [Fibroporia radiculosa]
Length = 325
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 136/263 (51%), Positives = 172/263 (65%), Gaps = 49/263 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD++ S+ L+WEL +Q+GPVVNVH+PKDR++ HQGYGF EF+ EEDA+YA
Sbjct: 11 EATVYLGNLDERCSDALVWELMLQAGPVVNVHLPKDRISMAHQGYGFCEFLTEEDAEYAC 70
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKL+GKPIRVNKASS +K LDVGAN+FIGNLD VDE+LLYDTFSAFGV+ T K
Sbjct: 71 KIMNQIKLWGKPIRVNKASSDKKQLDVGANLFIGNLDENVDERLLYDTFSAFGVMATTAK 130
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RDP +G SKG+ F+++ FE
Sbjct: 131 --------------------------------------IARDPGSGKSKGYGFVSFTDFE 152
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
+SDA+I++M+GQ+L N+ I+V YAFKKD KG+RHG+ AERLLAA QA + + L
Sbjct: 153 SSDAAIESMNGQFLMNKAITVQYAFKKDGKGERHGTPAERLLAA-----QARKNNAL--- 204
Query: 274 APPPAPLPPPPPPINIMGLPPPP 296
P PPP PI PP P
Sbjct: 205 ---PVSARPPPAPIAFGARPPMP 224
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +++G LD+ V E L+++ F G + + +D + +GYGF+ F E +D
Sbjct: 96 DVGANLFIGNLDENVDERLLYDTFSAFGVMATTAKIARDPGSGKSKGYGFVSFTDFESSD 155
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L K I V A
Sbjct: 156 AAIESMNGQFLMNKAITVQYA 176
>gi|409046552|gb|EKM56032.1| hypothetical protein PHACADRAFT_145047 [Phanerochaete carnosa
HHB-10118-sp]
Length = 322
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 134/248 (54%), Positives = 171/248 (68%), Gaps = 44/248 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD++ ++ L+WEL +Q+GPVVNVH+PKDR++ HQGYGF EF+ EEDA+YA
Sbjct: 11 EATVYLGNLDERCTDALIWELMLQAGPVVNVHLPKDRISMAHQGYGFCEFLTEEDAEYAC 70
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKL+GKPIRVNKASS +K LDVGAN+FIGNLD VDE+LLYDTFSAFGV+ T K
Sbjct: 71 KIMNQIKLWGKPIRVNKASSDKKQLDVGANLFIGNLDENVDERLLYDTFSAFGVMATTAK 130
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RDP +G SKG+ F++Y FE
Sbjct: 131 --------------------------------------IARDPQSGQSKGYGFVSYTDFE 152
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
+SDA+I++M+GQ+L N+PI+V YAFKKD KG+RHG+ AERLLAA QA + + L
Sbjct: 153 SSDAAIESMNGQFLMNKPITVQYAFKKDGKGERHGTPAERLLAA-----QARKNNALPVS 207
Query: 274 A-PPPAPL 280
A PPPAP+
Sbjct: 208 ARPPPAPM 215
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +++G LD+ V E L+++ F G + + +D + +GYGF+ + E +D
Sbjct: 96 DVGANLFIGNLDENVDERLLYDTFSAFGVMATTAKIARDPQSGQSKGYGFVSYTDFESSD 155
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L KPI V A
Sbjct: 156 AAIESMNGQFLMNKPITVQYA 176
>gi|390598508|gb|EIN07906.1| hypothetical protein PUNSTDRAFT_88604 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 343
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 137/257 (53%), Positives = 171/257 (66%), Gaps = 44/257 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD++ ++ L+WEL +Q+GPVVNVH+PKDR++ HQGYGF EF+ EEDA+YA
Sbjct: 11 EATVYLGNLDERCTDALIWELMIQAGPVVNVHLPKDRISMAHQGYGFCEFLTEEDAEYAC 70
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKL+GKPIRVNKASS +K LDVGAN+FIGNLD VDE++LYDTFSAFGVI T K
Sbjct: 71 KIMNQIKLWGKPIRVNKASSDKKQLDVGANLFIGNLDENVDERVLYDTFSAFGVISTTAK 130
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RDP TG SKG+ F++Y FE
Sbjct: 131 --------------------------------------IARDPSTGQSKGYGFVSYTDFE 152
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ----NPLSQADRPHQ 269
+SDA+I++M+GQ+L N+PI+V YAFKKD KG+RHG+ AERLLAAQ N L A R
Sbjct: 153 SSDAAIESMNGQFLMNKPITVQYAFKKDGKGERHGTPAERLLAAQARKNNALPVAARTAA 212
Query: 270 --LFADAPPPAPLPPPP 284
+FA P P P P
Sbjct: 213 PGMFAAGRPGFPGPYQP 229
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPV-VNVHMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +++G LD+ V E ++++ F G + + +D T +GYGF+ + E +D
Sbjct: 96 DVGANLFIGNLDENVDERVLYDTFSAFGVISTTAKIARDPSTGQSKGYGFVSYTDFESSD 155
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L KPI V A
Sbjct: 156 AAIESMNGQFLMNKPITVQYA 176
>gi|342320413|gb|EGU12353.1| Splicing factor 3b subunit 4 [Rhodotorula glutinis ATCC 204091]
Length = 317
Score = 266 bits (681), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 126/225 (56%), Positives = 162/225 (72%), Gaps = 38/225 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT Y+G LD++V++ L+WEL +Q+GPV NVH+PKDR++ THQGYGF EF+ EEDA+YA
Sbjct: 12 DATCYLGNLDERVTDALVWELMLQAGPVANVHLPKDRISMTHQGYGFCEFLTEEDAEYAC 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKL+GKPIRVNKASS +K LD+GAN+FIGNLDP +DE++LYDTF+AFG ++Q K
Sbjct: 72 KIMNQIKLFGKPIRVNKASSDRKQLDIGANLFIGNLDPNIDERMLYDTFTAFGTLVQPAK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RD TG SKGF F++Y SFE
Sbjct: 132 --------------------------------------ISRDVGTGASKGFGFVSYDSFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
A+DA+I++M+GQ+L N+P++VSYAFKKD KG+RHG+ AERLLAAQ
Sbjct: 154 AADAAIESMNGQFLMNKPVTVSYAFKKDGKGERHGTPAERLLAAQ 198
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVN-VHMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +++G LD + E ++++ F G +V + +D T +G+GF+ + E AD
Sbjct: 97 DIGANLFIGNLDPNIDERMLYDTFTAFGTLVQPAKISRDVGTGASKGFGFVSYDSFEAAD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L KP+ V+ A
Sbjct: 157 AAIESMNGQFLMNKPVTVSYA 177
>gi|302693156|ref|XP_003036257.1| hypothetical protein SCHCODRAFT_50059 [Schizophyllum commune H4-8]
gi|300109953|gb|EFJ01355.1| hypothetical protein SCHCODRAFT_50059 [Schizophyllum commune H4-8]
Length = 329
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 129/238 (54%), Positives = 166/238 (69%), Gaps = 42/238 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD++V++ ++WEL +Q+GPVVNVH+PKDR++ +HQGYGF EF+ EEDA+YA
Sbjct: 12 EATVYLGNLDERVTDAIVWELMLQAGPVVNVHLPKDRISMSHQGYGFCEFLTEEDAEYAC 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKL+GKPIRVNKASS +K LDVGAN+FIGNLD VDE+LLYDTFSAFG++ T K
Sbjct: 72 KIMNQIKLWGKPIRVNKASSDKKQLDVGANLFIGNLDENVDERLLYDTFSAFGMMATTAK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+ RDP TG SKG+ F+++ FE
Sbjct: 132 --------------------------------------VARDPGTGTSKGYGFVSFTDFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ----NPLSQADRP 267
ASDA+I+AM+GQ+L N+ I+V YAFKKD KG+RHG++AERLLAAQ N L RP
Sbjct: 154 ASDAAIEAMNGQFLMNKAITVQYAFKKDGKGERHGTSAERLLAAQARKNNALPMGARP 211
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +++G LD+ V E L+++ F G + + +D T T +GYGF+ F E +D
Sbjct: 97 DVGANLFIGNLDENVDERLLYDTFSAFGMMATTAKVARDPGTGTSKGYGFVSFTDFEASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L K I V A
Sbjct: 157 AAIEAMNGQFLMNKAITVQYA 177
>gi|392567732|gb|EIW60907.1| hypothetical protein TRAVEDRAFT_146596 [Trametes versicolor
FP-101664 SS1]
Length = 337
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 126/225 (56%), Positives = 160/225 (71%), Gaps = 38/225 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD++ S+ L+WEL +Q+GPVVNVH+PKDR++ THQGYGF EF+ EEDA+YA
Sbjct: 11 EATVYLGNLDERCSDALIWELMLQAGPVVNVHLPKDRISMTHQGYGFCEFLTEEDAEYAC 70
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKL+GKPIRVNKASS +K LDVGAN+FIGNLD VDE+LLYDTFSAFG++ T K
Sbjct: 71 KIMNQIKLWGKPIRVNKASSDKKQLDVGANLFIGNLDENVDERLLYDTFSAFGMMATTAK 130
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RDP +G SKG+ F++Y FE
Sbjct: 131 --------------------------------------IARDPTSGKSKGYGFVSYTDFE 152
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+SDA+I++M+GQ+L N+ I+V YAFKKD KG+RHG+ AERLLAAQ
Sbjct: 153 SSDAAIESMNGQFLMNKAITVQYAFKKDGKGERHGTPAERLLAAQ 197
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +++G LD+ V E L+++ F G + + +D + +GYGF+ + E +D
Sbjct: 96 DVGANLFIGNLDENVDERLLYDTFSAFGMMATTAKIARDPTSGKSKGYGFVSYTDFESSD 155
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L K I V A
Sbjct: 156 AAIESMNGQFLMNKAITVQYA 176
>gi|392596200|gb|EIW85523.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 322
Score = 264 bits (674), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 125/225 (55%), Positives = 160/225 (71%), Gaps = 38/225 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD++ S+ L+WEL +Q+GPVVNVH+PKDR++ HQGYGF EF+ EEDA+YA
Sbjct: 11 EATVYLGNLDERCSDALVWELMLQAGPVVNVHLPKDRISMAHQGYGFCEFLTEEDAEYAC 70
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKL+GKPIRVNKASS +K LDVGAN+FIGNLD VDE+LLYDTFSAFG++ T K
Sbjct: 71 KIMNQIKLWGKPIRVNKASSDKKQLDVGANLFIGNLDDNVDERLLYDTFSAFGLMATTAK 130
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RDP +G SKG+ F++Y FE
Sbjct: 131 --------------------------------------IARDPGSGMSKGYGFVSYIDFE 152
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+SDA+++AM+GQYL N+P++V YAFKKD KG+RHG++AER LAAQ
Sbjct: 153 SSDAAVEAMNGQYLMNKPLTVQYAFKKDGKGERHGTSAERTLAAQ 197
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +++G LDD V E L+++ F G + + +D + +GYGF+ ++ E +D
Sbjct: 96 DVGANLFIGNLDDNVDERLLYDTFSAFGLMATTAKIARDPGSGMSKGYGFVSYIDFESSD 155
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
A++ MN L KP+ V A
Sbjct: 156 AAVEAMNGQYLMNKPLTVQYA 176
>gi|409082711|gb|EKM83069.1| hypothetical protein AGABI1DRAFT_118461 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426200576|gb|EKV50500.1| hypothetical protein AGABI2DRAFT_183573 [Agaricus bisporus var.
bisporus H97]
Length = 296
Score = 264 bits (674), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 139/278 (50%), Positives = 179/278 (64%), Gaps = 57/278 (20%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD++ ++ L+WEL +Q+GPVVNVH+PKDR++ HQGYGF EF+ EEDA+YA
Sbjct: 11 EATVYLGNLDERCTDALIWELMLQAGPVVNVHLPKDRISMAHQGYGFCEFLTEEDAEYAC 70
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKL+GKPIRVNKASS +K LDVGAN+FIGNLD VDE+LLYDTFSAFG++ T K
Sbjct: 71 KIMNQIKLWGKPIRVNKASSDKKQLDVGANLFIGNLDENVDERLLYDTFSAFGMMATTAK 130
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RD +G SKG+ F++Y FE
Sbjct: 131 --------------------------------------IARDTGSGISKGYGFVSYTDFE 152
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
+SDA+I++M+GQ+L N+ I+V YAFKK+ KG+RHG+AAERLLAA QA + + L
Sbjct: 153 SSDAAIESMNGQFLMNKAITVQYAFKKEGKGERHGTAAERLLAA-----QARKNNALPVT 207
Query: 274 A-PPPAPL---PPPPPP----------INIMGLPPPPP 297
A PPPAP+ PP P + PPPPP
Sbjct: 208 ARPPPAPMGFGARPPMPGYQGPYQGQFAGALAQPPPPP 245
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +++G LD+ V E L+++ F G + + +D + +GYGF+ + E +D
Sbjct: 96 DVGANLFIGNLDENVDERLLYDTFSAFGMMATTAKIARDTGSGISKGYGFVSYTDFESSD 155
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L K I V A
Sbjct: 156 AAIESMNGQFLMNKAITVQYA 176
>gi|336367930|gb|EGN96274.1| hypothetical protein SERLA73DRAFT_185935 [Serpula lacrymans var.
lacrymans S7.3]
Length = 319
Score = 263 bits (673), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 126/225 (56%), Positives = 158/225 (70%), Gaps = 38/225 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD++ ++ L+WEL +Q+GPVVNVH+PKDR++ HQGYGF EF+ EEDA+YA
Sbjct: 11 EATVYLGNLDERCTDALVWELMLQAGPVVNVHLPKDRISMAHQGYGFCEFLTEEDAEYAC 70
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKL+GKPIRVNKASS +K LDVGAN+FIGNLD VDE+LLYDTFSAFGV+ T K
Sbjct: 71 KIMNQIKLWGKPIRVNKASSDKKQLDVGANLFIGNLDENVDERLLYDTFSAFGVMATTAK 130
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RDP TG SKG+ F +Y FE
Sbjct: 131 --------------------------------------IARDPGTGKSKGYGFASYTDFE 152
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+SDA+ ++M+GQ+L N+ ISV YAFKKD KG+RHG++AERLLAAQ
Sbjct: 153 SSDAATESMNGQFLMNKAISVQYAFKKDGKGERHGTSAERLLAAQ 197
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +++G LD+ V E L+++ F G + + +D T +GYGF + E +D
Sbjct: 96 DVGANLFIGNLDENVDERLLYDTFSAFGVMATTAKIARDPGTGKSKGYGFASYTDFESSD 155
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
A + MN L K I V A
Sbjct: 156 AATESMNGQFLMNKAISVQYA 176
>gi|402225695|gb|EJU05756.1| hypothetical protein DACRYDRAFT_62409 [Dacryopinax sp. DJM-731 SS1]
Length = 341
Score = 263 bits (671), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 133/262 (50%), Positives = 174/262 (66%), Gaps = 49/262 (18%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E + +AT+Y+G LD++V++ ++WEL +Q+GPVVNVH+PKDR++ HQGYGF EF+ EED
Sbjct: 6 EDRNQEATVYLGNLDERVTDAIIWELMLQAGPVVNVHLPKDRISMAHQGYGFCEFLTEED 65
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
A+YA KIMN IKL+GKPIRVNKASS +K LDVGAN+FIGNLDP VDE+LLYDTFSAFG++
Sbjct: 66 AEYACKIMNQIKLWGKPIRVNKASSDKKQLDVGANLFIGNLDPNVDERLLYDTFSAFGIL 125
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFIN 208
Q K I RDP T SKG+ FI+
Sbjct: 126 TQPAK--------------------------------------IARDPQTSESKGYGFIS 147
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPH 268
Y+ FE+SD +I++M+ Q+L N+ I+V YAFKKD KG+RHG+ AER+LA SQA + +
Sbjct: 148 YSDFESSDRAIESMNNQFLMNKAITVQYAFKKDGKGERHGTDAERMLA-----SQAKKNN 202
Query: 269 QLFADAPPPAPLPPPPPPINIM 290
L P L PPP P+ I+
Sbjct: 203 AL------PLGLRPPPAPMGIL 218
>gi|393220802|gb|EJD06288.1| hypothetical protein FOMMEDRAFT_18426 [Fomitiporia mediterranea
MF3/22]
Length = 358
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 132/248 (53%), Positives = 170/248 (68%), Gaps = 44/248 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD++VS+ ++WEL +Q+GPVVNVH+PKDR++ HQGYGF EF+ EEDA+YA
Sbjct: 10 EATVYLGNLDERVSDAIIWELMLQAGPVVNVHLPKDRISMAHQGYGFCEFLTEEDAEYAC 69
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKL+GKPIRVNKASS +K LDVGAN+F+GNLD +DE+LLYDTFSAFG++ T K
Sbjct: 70 KIMNQIKLWGKPIRVNKASSDKKQLDVGANLFVGNLDENLDERLLYDTFSAFGMLATTAK 129
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+ RDP TG SKG+ F++Y FE
Sbjct: 130 --------------------------------------VARDPTTGKSKGYGFVSYIDFE 151
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
++DA+I+AM+ Q+L N+ ISV YAFKKD KG+RHG+ AERLLAA QA + + L A
Sbjct: 152 SADAAIEAMNNQFLMNKAISVQYAFKKDGKGERHGTPAERLLAA-----QARKNNALPAS 206
Query: 274 A-PPPAPL 280
A PPPA L
Sbjct: 207 ARPPPATL 214
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A ++VG LD+ + E L+++ F G + + +D T +GYGF+ ++ E AD
Sbjct: 95 DVGANLFVGNLDENLDERLLYDTFSAFGMLATTAKVARDPTTGKSKGYGFVSYIDFESAD 154
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L K I V A
Sbjct: 155 AAIEAMNNQFLMNKAISVQYA 175
>gi|395330318|gb|EJF62702.1| hypothetical protein DICSQDRAFT_104224 [Dichomitus squalens
LYAD-421 SS1]
Length = 344
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 125/225 (55%), Positives = 159/225 (70%), Gaps = 38/225 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD++ ++ L+WEL +Q+GPVVNVH+PKDR++ HQGYGF EF+ EEDA+YA
Sbjct: 11 EATVYLGNLDERCTDALIWELMLQAGPVVNVHLPKDRISMAHQGYGFCEFLTEEDAEYAC 70
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKL+GKPIRVNKASS +K LDVGAN+FIGNLD VDE+LLYDTFSAFG++ T K
Sbjct: 71 KIMNQIKLWGKPIRVNKASSDKKQLDVGANLFIGNLDENVDERLLYDTFSAFGMMATTAK 130
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RDP TG SKG+ F++Y FE
Sbjct: 131 --------------------------------------IARDPQTGKSKGYGFVSYTDFE 152
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+SDA+I++M+GQ+L N+ I+V YAFKKD KG+RHG+ AERLLAAQ
Sbjct: 153 SSDAAIESMNGQFLMNKAITVQYAFKKDGKGERHGTPAERLLAAQ 197
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 114/256 (44%), Gaps = 96/256 (37%)
Query: 112 SSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT-------------------- 151
S Q + + A +++GNLD + L+++ G ++
Sbjct: 2 SRPQDDRNQEATVYLGNLDERCTDALIWELMLQAGPVVNVHLPKDRISMAHQGYGFCEFL 61
Query: 152 --------PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLD-------------- 189
KIMN IKL+GKPIRVNKASS +K LDVGAN+FIGNLD
Sbjct: 62 TEEDAEYACKIMNQIKLWGKPIRVNKASSDKKQLDVGANLFIGNLDENVDERLLYDTFSA 121
Query: 190 -------PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242
+I RDP TG SKG+ F++Y FE+SDA+I++M+GQ+L N+ I+V YAFKKD
Sbjct: 122 FGMMATTAKIARDPQTGKSKGYGFVSYTDFESSDAAIESMNGQFLMNKAITVQYAFKKDG 181
Query: 243 KGDRHGSAAERLLAA--------------------------------QNPLS-------- 262
KG+RHG+ AERLLAA Q P
Sbjct: 182 KGERHGTPAERLLAAQARKNNALPVAARPPPAPMGAFGARPPMPGYPQGPYQGQFAGALA 241
Query: 263 -------QADRPHQLF 271
P Q
Sbjct: 242 AAPPPPPAGFTPQQTI 257
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +++G LD+ V E L+++ F G + + +D T +GYGF+ + E +D
Sbjct: 96 DVGANLFIGNLDENVDERLLYDTFSAFGMMATTAKIARDPQTGKSKGYGFVSYTDFESSD 155
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L K I V A
Sbjct: 156 AAIESMNGQFLMNKAITVQYA 176
>gi|145491019|ref|XP_001431509.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145522722|ref|XP_001447205.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398614|emb|CAK64111.1| unnamed protein product [Paramecium tetraurelia]
gi|124414705|emb|CAK79808.1| unnamed protein product [Paramecium tetraurelia]
Length = 260
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 126/230 (54%), Positives = 162/230 (70%), Gaps = 39/230 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ATIY+G LD KV++ ++WELF+Q GPVVNVH+PKD+++ HQGYGF+EF EEDADYAI
Sbjct: 18 EATIYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKSEEDADYAI 77
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIM+MIKLYGKPI+VNKAS ++ +VGAN+FIGNLD E+DEK LY+TFSAFG IL T
Sbjct: 78 KIMHMIKLYGKPIKVNKASQDKRTQEVGANLFIGNLDTEIDEKTLYETFSAFGHILST-- 135
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+IMR+P+TG SKG+ F++Y +FE
Sbjct: 136 -------------------------------------KIMRNPETGVSKGYGFVSYDNFE 158
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
+SD ++ AM+GQ+L + I V YAFKKD+KG+RHGS AERLLAA PL+Q
Sbjct: 159 SSDGALTAMNGQFLGTKIIRVEYAFKKDAKGERHGSQAERLLAANRPLAQ 208
>gi|221486340|gb|EEE24601.1| splicing factor, putative [Toxoplasma gondii GT1]
Length = 576
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 120/227 (52%), Positives = 160/227 (70%), Gaps = 39/227 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+Y+G LD +V + L+WELFVQ GPV V +P+D++T HQGYGF+EF E DADYA+
Sbjct: 28 DATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYAL 87
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K+MNM+KLYGK +R+NK++ ++N DVGAN+F+GNLDP+VDEK +YDTFSAFG I+
Sbjct: 88 KLMNMVKLYGKALRLNKSAQDRRNFDVGANVFLGNLDPDVDEKTIYDTFSAFGNIISA-- 145
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+IMRDP+TG S+GF F+++ +FE
Sbjct: 146 -------------------------------------KIMRDPETGLSRGFGFVSFDTFE 168
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNP 260
ASDA++ AM+GQ++CNRPI VSYA+KKD++G+RHGSAAERLLAA P
Sbjct: 169 ASDAALAAMNGQFICNRPIHVSYAYKKDTRGERHGSAAERLLAANRP 215
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D A +++G LD V E +++ F G +++ + +D T +G+GF+ F E +D
Sbjct: 113 DVGANVFLGNLDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDA 172
Query: 92 AIKIMNMIKLYGKPIRVNKA 111
A+ MN + +PI V+ A
Sbjct: 173 ALAAMNGQFICNRPIHVSYA 192
>gi|237833669|ref|XP_002366132.1| splicing factor, putative [Toxoplasma gondii ME49]
gi|211963796|gb|EEA98991.1| splicing factor, putative [Toxoplasma gondii ME49]
Length = 576
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 120/227 (52%), Positives = 160/227 (70%), Gaps = 39/227 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+Y+G LD +V + L+WELFVQ GPV V +P+D++T HQGYGF+EF E DADYA+
Sbjct: 28 DATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYAL 87
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K+MNM+KLYGK +R+NK++ ++N DVGAN+F+GNLDP+VDEK +YDTFSAFG I+
Sbjct: 88 KLMNMVKLYGKALRLNKSAQDRRNFDVGANVFLGNLDPDVDEKTIYDTFSAFGNIISA-- 145
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+IMRDP+TG S+GF F+++ +FE
Sbjct: 146 -------------------------------------KIMRDPETGLSRGFGFVSFDTFE 168
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNP 260
ASDA++ AM+GQ++CNRPI VSYA+KKD++G+RHGSAAERLLAA P
Sbjct: 169 ASDAALAAMNGQFICNRPIHVSYAYKKDTRGERHGSAAERLLAANRP 215
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D A +++G LD V E +++ F G +++ + +D T +G+GF+ F E +D
Sbjct: 113 DVGANVFLGNLDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDA 172
Query: 92 AIKIMNMIKLYGKPIRVNKA 111
A+ MN + +PI V+ A
Sbjct: 173 ALAAMNGQFICNRPIHVSYA 192
>gi|221508124|gb|EEE33711.1| splicing factor, putative [Toxoplasma gondii VEG]
Length = 576
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 120/227 (52%), Positives = 160/227 (70%), Gaps = 39/227 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+Y+G LD +V + L+WELFVQ GPV V +P+D++T HQGYGF+EF E DADYA+
Sbjct: 28 DATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYAL 87
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K+MNM+KLYGK +R+NK++ ++N DVGAN+F+GNLDP+VDEK +YDTFSAFG I+
Sbjct: 88 KLMNMVKLYGKALRLNKSAQDRRNFDVGANVFLGNLDPDVDEKTIYDTFSAFGNIISA-- 145
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+IMRDP+TG S+GF F+++ +FE
Sbjct: 146 -------------------------------------KIMRDPETGLSRGFGFVSFDTFE 168
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNP 260
ASDA++ AM+GQ++CNRPI VSYA+KKD++G+RHGSAAERLLAA P
Sbjct: 169 ASDAALAAMNGQFICNRPIHVSYAYKKDTRGERHGSAAERLLAANRP 215
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D A +++G LD V E +++ F G +++ + +D T +G+GF+ F E +D
Sbjct: 113 DVGANVFLGNLDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDA 172
Query: 92 AIKIMNMIKLYGKPIRVNKA 111
A+ MN + +PI V+ A
Sbjct: 173 ALAAMNGQFICNRPIHVSYA 192
>gi|393238609|gb|EJD46145.1| hypothetical protein AURDEDRAFT_113809 [Auricularia delicata
TFB-10046 SS5]
Length = 312
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 127/225 (56%), Positives = 161/225 (71%), Gaps = 38/225 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD++V++ ++WEL +Q+GPVVNVH+PKDR++ +HQGYGF EF+ EEDA+YA
Sbjct: 11 EATVYLGNLDERVTDAIVWELMLQAGPVVNVHLPKDRISMSHQGYGFCEFLTEEDAEYAC 70
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKL+GKPIRVNKASS +K LDVGAN+FIGNLD VDE+LLYDTF+AFG +L P
Sbjct: 71 KIMNQIKLWGKPIRVNKASSDKKQLDVGANLFIGNLDENVDERLLYDTFTAFG-LLSAP- 128
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+I RDP T SKG+ FI+YA FE
Sbjct: 129 ------------------------------------AKIARDPQTMASKGYGFISYADFE 152
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+SDA+I+ M+GQYL N+PI+V YAFKKD KG+RHG+ AERLLAAQ
Sbjct: 153 SSDAAIENMNGQYLMNKPITVQYAFKKDGKGERHGTPAERLLAAQ 197
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVN-VHMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +++G LD+ V E L+++ F G + + +D T +GYGFI + E +D
Sbjct: 96 DVGANLFIGNLDENVDERLLYDTFTAFGLLSAPAKIARDPQTMASKGYGFISYADFESSD 155
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L KPI V A
Sbjct: 156 AAIENMNGQYLMNKPITVQYA 176
>gi|389749090|gb|EIM90267.1| hypothetical protein STEHIDRAFT_93143 [Stereum hirsutum FP-91666
SS1]
Length = 338
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 124/225 (55%), Positives = 158/225 (70%), Gaps = 38/225 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD++ ++ L+WEL +Q+GPVVNVH+PKDR++ HQGYGF EF+ E+DA+YA
Sbjct: 11 EATVYLGNLDERCTDALVWELMLQAGPVVNVHLPKDRISMAHQGYGFCEFLTEDDAEYAC 70
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKL+GKPIRVNKASS +K LDVGAN+FIGNLD VDE+LLYDTFSAFGV+ T K
Sbjct: 71 KIMNQIKLWGKPIRVNKASSDKKQLDVGANLFIGNLDENVDERLLYDTFSAFGVMATTAK 130
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RDP TG SKG+ F+ Y FE
Sbjct: 131 --------------------------------------IARDPQTGQSKGYGFVAYTDFE 152
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+SDA++++M+GQ+L N+ I+V YAFKKD KG+RHG+ AERLLAAQ
Sbjct: 153 SSDAAVESMNGQFLMNKAITVQYAFKKDGKGERHGTPAERLLAAQ 197
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +++G LD+ V E L+++ F G + + +D T +GYGF+ + E +D
Sbjct: 96 DVGANLFIGNLDENVDERLLYDTFSAFGVMATTAKIARDPQTGQSKGYGFVAYTDFESSD 155
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
A++ MN L K I V A
Sbjct: 156 AAVESMNGQFLMNKAITVQYA 176
>gi|428161292|gb|EKX30760.1| hypothetical protein GUITHDRAFT_123023 [Guillardia theta CCMP2712]
Length = 209
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 129/227 (56%), Positives = 160/227 (70%), Gaps = 39/227 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVG + +K +E ++WELF+Q+GPVVNVH+P+D+VT H G+GF+EF EEDA+YAI
Sbjct: 14 DATIYVGNITEKCTEEILWELFLQAGPVVNVHIPRDKVTTVHSGFGFVEFRSEEDAEYAI 73
Query: 94 KIMNMIKLYGKPIRVN-KASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
KIMNMIKL+G+P+R+N KAS K LDVGAN+FIGNL+PEVDEKLLYDTFSAFGVI
Sbjct: 74 KIMNMIKLHGQPLRLNKKASGEIKVLDVGANLFIGNLEPEVDEKLLYDTFSAFGVI---- 129
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
+GN P+ MRDP+TG SKGFAF+NY F
Sbjct: 130 --------------------------------VGNT-PKCMRDPETGQSKGFAFVNYDCF 156
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKD-SKGDRHGSAAERLLAAQ 258
EA+D +I+AM+GQYLC RPISV YA+KKD SKG+RHG R + +
Sbjct: 157 EAADMAIEAMNGQYLCGRPISVQYAYKKDGSKGERHGRWERRKMGEE 203
>gi|401409932|ref|XP_003884414.1| putative splicing factor [Neospora caninum Liverpool]
gi|325118832|emb|CBZ54384.1| putative splicing factor [Neospora caninum Liverpool]
Length = 550
Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 126/250 (50%), Positives = 168/250 (67%), Gaps = 46/250 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+Y+G LD +V + L+WELFVQ GPV V +P+D++T HQGYGF+EF E DADYA+
Sbjct: 28 DATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFTNEVDADYAL 87
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K+MNM+KLYGK +R+NK++ ++N DVGANIF+GNLDP+VDEK +YDTFS FG IL
Sbjct: 88 KLMNMVKLYGKSLRLNKSAQDRRNFDVGANIFLGNLDPDVDEKTIYDTFSTFGNILTA-- 145
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+IMRDP+TG S+GF F+++ +FE
Sbjct: 146 -------------------------------------KIMRDPETGISRGFGFVSFDTFE 168
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA++ AM+GQ++CNRPI VSYA+KKD++G+RHGSAAERLLA A+RP + +
Sbjct: 169 ASDAALAAMNGQFICNRPIHVSYAYKKDTRGERHGSAAERLLA-------ANRPQIINPN 221
Query: 274 APPPAPLPPP 283
AP + PP
Sbjct: 222 APATGGVKPP 231
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D A I++G LD V E +++ F G ++ + +D T +G+GF+ F E +D
Sbjct: 113 DVGANIFLGNLDPDVDEKTIYDTFSTFGNILTAKIMRDPETGISRGFGFVSFDTFEASDA 172
Query: 92 AIKIMNMIKLYGKPIRVNKA 111
A+ MN + +PI V+ A
Sbjct: 173 ALAAMNGQFICNRPIHVSYA 192
>gi|443918492|gb|ELU38942.1| splicing factor 3b subunit 4 [Rhizoctonia solani AG-1 IA]
Length = 325
Score = 260 bits (664), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 122/230 (53%), Positives = 160/230 (69%), Gaps = 38/230 (16%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E + +AT+Y+G LD++ ++ L+WEL +Q+GPVVNVH+PKDR++Q HQG+GF EF+ EED
Sbjct: 7 EDRNAEATVYLGNLDERCTDALIWELMLQAGPVVNVHLPKDRISQAHQGFGFCEFLTEED 66
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
A+YA KIMN IKL+GKPIRVNK+SS +K LDVGAN+FIG LD VDE+LLYDTFSAFGV+
Sbjct: 67 AEYACKIMNQIKLWGKPIRVNKSSSDKKQLDVGANLFIGGLDLNVDERLLYDTFSAFGVM 126
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFIN 208
T K + RDP +G SKG+ F++
Sbjct: 127 STTAK--------------------------------------VARDPASGESKGYGFVS 148
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
Y FE++DA+I+AM+GQ+L N+ I V YAFKKD KG+RHG+ AER+LAAQ
Sbjct: 149 YTDFESADAAIEAMNGQFLMNKAIQVQYAFKKDGKGERHGTTAERMLAAQ 198
>gi|307208549|gb|EFN85888.1| Splicing factor 3B subunit 4 [Harpegnathos saltator]
Length = 429
Score = 259 bits (663), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 147/259 (56%), Positives = 166/259 (64%), Gaps = 69/259 (26%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLDDKV+E+LMWELFVQSGPV Y +I FM
Sbjct: 12 DATIYVGGLDDKVTESLMWELFVQSGPV--------------GMYIYISFM--------- 48
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
++N + + K Q + G F+G D + K
Sbjct: 49 HVLN--------VHMPKDRVTQMHQGYGFVEFMGEEDADY-----------------AIK 83
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPE---------------------I 192
IMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLDPE I
Sbjct: 84 IMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI 143
Query: 193 MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
MRDP+TGNSKGFAFIN+ASF+ASDASI+AM+GQYLCNRPISVSYAFK+D+KG+RHGSAAE
Sbjct: 144 MRDPETGNSKGFAFINFASFDASDASIEAMNGQYLCNRPISVSYAFKRDAKGERHGSAAE 203
Query: 253 RLLAAQNPLSQADRPHQLF 271
RLLAAQNPLSQADRPHQLF
Sbjct: 204 RLLAAQNPLSQADRPHQLF 222
>gi|403172110|ref|XP_003331254.2| hypothetical protein PGTG_13217 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169716|gb|EFP86835.2| hypothetical protein PGTG_13217 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 392
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 124/231 (53%), Positives = 160/231 (69%), Gaps = 42/231 (18%)
Query: 32 DGD----ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
DGD AT+Y+G LD++ ++ L+WEL +Q+GPVVNVH+PKDRV+ +HQGYGF EF+ E+
Sbjct: 6 DGDRNQEATVYMGNLDERCTDALVWELMLQAGPVVNVHLPKDRVSMSHQGYGFCEFLTED 65
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
DA+YA KIMN IKLYGKPIRVNKASS +K +D+GAN+FIGNLD VDE++LYDTFS FG
Sbjct: 66 DAEYACKIMNQIKLYGKPIRVNKASSDRKQVDIGANLFIGNLDANVDERMLYDTFSTFGT 125
Query: 148 ILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFI 207
++QT K I R+P TG S G+ F+
Sbjct: 126 LVQTAK--------------------------------------IARNPTTGQSNGYGFV 147
Query: 208 NYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
Y SFEA+D +I++M+GQ+L N+ I+V YAFKKD KG+RHG+ AERLLAAQ
Sbjct: 148 AYESFEAADTAIESMNGQFLMNKAITVQYAFKKDGKGERHGTPAERLLAAQ 198
>gi|353227298|emb|CCA77811.1| related to spliceosome-associated protein SAP-49 [Piriformospora
indica DSM 11827]
Length = 298
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 124/225 (55%), Positives = 158/225 (70%), Gaps = 38/225 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD++V++ ++WEL +Q+GPVVNVH+PKDRV+ +HQGYGF EF+ EEDA+YA
Sbjct: 12 EATVYLGNLDERVTDAIVWELMLQAGPVVNVHLPKDRVSMSHQGYGFCEFLTEEDAEYAC 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKL+GKPIRVNKASS +K LD+GAN+FIGNLDP VDE+LLYDTF+ FG + Q K
Sbjct: 72 KIMNQIKLWGKPIRVNKASSDKKQLDIGANLFIGNLDPAVDERLLYDTFTVFGPLTQPAK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RDP T S+G F++YA FE
Sbjct: 132 --------------------------------------IARDPTTMESRGHGFVSYADFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
++DA+I+AM+ QYL N+PI V YAFKKD KG+RHG+ AERLLAAQ
Sbjct: 154 SADAAIEAMNKQYLMNKPIEVQYAFKKDGKGERHGTEAERLLAAQ 198
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVN-VHMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +++G LD V E L+++ F GP+ + +D T +G+GF+ + E AD
Sbjct: 97 DIGANLFIGNLDPAVDERLLYDTFTVFGPLTQPAKIARDPTTMESRGHGFVSYADFESAD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L KPI V A
Sbjct: 157 AAIEAMNKQYLMNKPIEVQYA 177
>gi|1279382|emb|CAA65831.1| spliceosomal protein [Drosophila melanogaster]
Length = 366
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 151/294 (51%), Positives = 172/294 (58%), Gaps = 99/294 (33%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPV-------------------VNVHMPKDRVTQT 74
DATIY GGLDDKVSETL+WELFVQ+GPV VNVHMPKD
Sbjct: 12 DATIYAGGLDDKVSETLLWELFVQAGPVGKSGHTCIVPSSSLIVMLAVNVHMPKD----- 66
Query: 75 HQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVD 134
++ M + YG F+
Sbjct: 67 -------------------RVTQMHQGYG---------------------FV-------- 78
Query: 135 EKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLD----- 189
+ L + + +G+ KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLD
Sbjct: 79 -EFLSEEDADYGI-----KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDVEVDE 132
Query: 190 ----------------PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPIS 233
P+IMRDP+TG SK FAFIN+ASFEASDA++DAM+GQYLCNRPIS
Sbjct: 133 KLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPIS 192
Query: 234 VSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFADAPPPAPLPPPPPPI 287
VSYAFKKD KG+RHGSAAERLLAAQNP + ADRPHQLFADAP +P P I
Sbjct: 193 VSYAFKKDHKGERHGSAAERLLAAQNPSTHADRPHQLFADAPVQTMMPQMPGQI 246
>gi|170093944|ref|XP_001878193.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646647|gb|EDR10892.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 302
Score = 256 bits (654), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 121/225 (53%), Positives = 157/225 (69%), Gaps = 38/225 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD++ ++ L+WEL +Q+GPVVNVH+PKDR++ HQGYGF E + EEDA+YA
Sbjct: 11 EATVYLGNLDERCTDALVWELMLQAGPVVNVHLPKDRISMAHQGYGFCELLTEEDAEYAC 70
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKL+GKPIRVNKASS +K LDVGAN+FIGNLD VDE+LLYDTFSAFG++ T K
Sbjct: 71 KIMNQIKLWGKPIRVNKASSDKKQLDVGANLFIGNLDENVDERLLYDTFSAFGIMATTAK 130
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RD +G SKG+ F++Y FE
Sbjct: 131 --------------------------------------IARDTGSGTSKGYGFVSYTDFE 152
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+SDA++++M+GQ+L N+ I+V YAFKKD KG+RHG+ AERLLAAQ
Sbjct: 153 SSDAAVESMNGQFLMNKAITVQYAFKKDGKGERHGTPAERLLAAQ 197
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +++G LD+ V E L+++ F G + + +D + T +GYGF+ + E +D
Sbjct: 96 DVGANLFIGNLDENVDERLLYDTFSAFGIMATTAKIARDTGSGTSKGYGFVSYTDFESSD 155
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
A++ MN L K I V A
Sbjct: 156 AAVESMNGQFLMNKAITVQYA 176
>gi|358057302|dbj|GAA96651.1| hypothetical protein E5Q_03322 [Mixia osmundae IAM 14324]
Length = 274
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 124/225 (55%), Positives = 156/225 (69%), Gaps = 38/225 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ATIY+G LD++V++ L+WEL +Q GP+ NVH+PKDRV+ HQGYGF EF EEDA+YA+
Sbjct: 13 EATIYMGNLDERVTDALVWELMLQCGPIGNVHLPKDRVSMAHQGYGFCEFQNEEDAEYAV 72
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKL+GKPIRVNKASS +K +D+GAN+FIGNLDP VDE+LLYD FS FG + T
Sbjct: 73 KIMNQIKLFGKPIRVNKASSDRKQVDIGANLFIGNLDPAVDERLLYDAFSNFGTMTNTAY 132
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I R+ TG S+G FI++ +FE
Sbjct: 133 --------------------------------------IPRETGTGASRGHGFISFDTFE 154
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
ASDA+I+AM+ QYL N+PI+V YAFKKD+KG+RHGSAAERLLAAQ
Sbjct: 155 ASDAAIEAMNNQYLMNKPITVQYAFKKDTKGERHGSAAERLLAAQ 199
>gi|443900412|dbj|GAC77738.1| splicing factor 3b, subunit 4 [Pseudozyma antarctica T-34]
Length = 319
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 131/263 (49%), Positives = 176/263 (66%), Gaps = 41/263 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT Y+G LD++ ++ ++WEL +Q+GP+VN+H+PKDR++QTHQGY F EF E+DADYA
Sbjct: 62 DATCYIGNLDERATDAIVWELMIQAGPLVNLHLPKDRISQTHQGYAFAEFQTEQDADYAC 121
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K+MN +KLYGKPIRVNKAS+ +K +D+GAN+F+G+LDP VDE LLY+TFSAFG I+ PK
Sbjct: 122 KVMNGLKLYGKPIRVNKASNDRKQIDIGANLFVGSLDPAVDEHLLYETFSAFGNIVGLPK 181
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+ RDP TG KG+AF+++ SFE
Sbjct: 182 --------------------------------------VARDPATGEPKGYAFVSFDSFE 203
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK-GDRHGSAAERLLAAQNPLSQADRPHQLFA 272
A+DA+++A++GQ+L N+ I+V YA KKDSK G+RHG+AAERLLAAQ + A P Q +
Sbjct: 204 AADAAVEALNGQFLLNKNITVDYAIKKDSKNGERHGTAAERLLAAQARKNNA-LPTQQYP 262
Query: 273 DAPPPAPLPPPPPPINIMGLPPP 295
AP P P PP + G PPP
Sbjct: 263 PAPHALPQPYAQPPQS-NGAPPP 284
>gi|328860868|gb|EGG09973.1| hypothetical protein MELLADRAFT_71116 [Melampsora larici-populina
98AG31]
Length = 382
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 122/231 (52%), Positives = 160/231 (69%), Gaps = 42/231 (18%)
Query: 32 DGD----ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
DGD AT+Y+G LD++ ++ L+WEL +Q+GPVVNVH+PKDRV+ +HQGYGF EF+ E+
Sbjct: 6 DGDRNQEATVYMGNLDERCTDALVWELMLQAGPVVNVHLPKDRVSMSHQGYGFCEFLTED 65
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
DA+YA KIMN IKLYGKPIRVNKASS +K +D+GAN+FIGNLD VDE++LYDTF+ FG
Sbjct: 66 DAEYACKIMNQIKLYGKPIRVNKASSDRKQVDIGANLFIGNLDVNVDERMLYDTFNTFGT 125
Query: 148 ILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFI 207
++QT K I R+P TG S G+ F+
Sbjct: 126 LVQTAK--------------------------------------IARNPSTGQSNGYGFV 147
Query: 208 NYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
Y SFE++D +I++M+GQ+L N+ I+V YAFKKD KG+RHG+ AERLLAAQ
Sbjct: 148 AYESFESADTAIESMNGQFLMNKAITVQYAFKKDGKGERHGTPAERLLAAQ 198
>gi|296424721|ref|XP_002841895.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638146|emb|CAZ86086.1| unnamed protein product [Tuber melanosporum]
Length = 392
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 136/273 (49%), Positives = 177/273 (64%), Gaps = 50/273 (18%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++VS+ L+WEL +Q+G +VNVH+PKDRVTQTHQG+GF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVSDALVWELMLQAGRIVNVHLPKDRVTQTHQGFGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ QK ++VGA +F+GNLDP VDEK L+DTF+ FG ++
Sbjct: 70 AARIMNQVRLYGKPIRVNKASADKQKTVEVGAELFVGNLDPMVDEKTLFDTFTTFGNLVS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK I RD D G SKGF FI+Y
Sbjct: 130 APK--------------------------------------IARD-DQGISKGFGFISYD 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNP-----LSQAD 265
SFEASD +I++MH Q+L N+ I+V YA+KKD KG+RHG AERLLAAQ ++
Sbjct: 151 SFEASDKAIESMHNQFLMNKEINVQYAYKKDGKGERHGDQAERLLAAQAKKHNVQITPQQ 210
Query: 266 RPHQLFADAPPPAPLPPPPPPINIMGLPPPPPS 298
P QLFA P + +PP P +G PP PS
Sbjct: 211 LPAQLFAPTGPTSGVPPIP-----VGAGPPAPS 238
>gi|429327508|gb|AFZ79268.1| spliceosome associated protein, putative [Babesia equi]
Length = 311
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 126/268 (47%), Positives = 174/268 (64%), Gaps = 40/268 (14%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+YVG +D +V E L+WELF+Q+G V N+H+P+D+VT HQGYGF+EF E+DADYA+
Sbjct: 17 EATLYVGNVDMQVDEELLWELFIQAGVVKNIHIPRDKVTGQHQGYGFVEFETEDDADYAV 76
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+I+N +KLY KP+R+NKAS ++N++VGAN+FIGN+D EVDEKLL+DTFSAFG +L T
Sbjct: 77 RILNFVKLYNKPLRLNKASRDKENIEVGANLFIGNVDEEVDEKLLHDTFSAFGNVLLT-- 134
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+I+RD D+ +AF++Y SFE
Sbjct: 135 -------------------------------------KIVRDIDSAGRNAYAFVSYDSFE 157
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA++ AM+GQ+LCN+PI VSYA+KKD+KG+RHGSAAERL+AA P +
Sbjct: 158 ASDAALAAMNGQFLCNKPIHVSYAYKKDTKGERHGSAAERLIAANRPADATSQTGTSQYG 217
Query: 274 APPPAPLP-PPPPPINIMGLPPPPPSGL 300
+ P P+ P P + G+P P G+
Sbjct: 218 SQMPTPMAYPSPIAMPTQGVPVAPAVGV 245
>gi|440632279|gb|ELR02198.1| hypothetical protein GMDG_00991 [Geomyces destructans 20631-21]
Length = 352
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 125/246 (50%), Positives = 165/246 (67%), Gaps = 45/246 (18%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+YVG +D++V+++L+WEL +Q+G +VNVH+PKDRVTQ+HQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYVGNIDERVTDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A ++MN ++LYGKPIRVNKAS+ QK LDVGAN+F+GNL P +DE LYDTFS FG +L
Sbjct: 70 AARVMNQVRLYGKPIRVNKASADKQKPLDVGANLFLGNLSPHLDEHSLYDTFSRFGALLA 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK I RDP T SKG+AF++YA
Sbjct: 130 PPK--------------------------------------IARDPTTALSKGYAFLSYA 151
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQL 270
SF+A+D ++ MHGQ L +R ISV YA+KKD KG+RHG AER+LAAQ + H +
Sbjct: 152 SFDAADDAVANMHGQTLLDRAISVQYAYKKDGKGERHGDPAERMLAAQA------KAHGV 205
Query: 271 FADAPP 276
+APP
Sbjct: 206 LPEAPP 211
>gi|71021191|ref|XP_760826.1| hypothetical protein UM04679.1 [Ustilago maydis 521]
gi|46100200|gb|EAK85433.1| hypothetical protein UM04679.1 [Ustilago maydis 521]
Length = 294
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 128/252 (50%), Positives = 171/252 (67%), Gaps = 40/252 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT Y+G +DD+ ++ ++WEL +Q+GP+VN+H+PKDR+TQ+HQGY F EF E+DADYA
Sbjct: 12 DATCYIGNIDDRANDAIVWELMIQAGPLVNLHLPKDRITQSHQGYAFAEFQTEQDADYAC 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K+MN +KLYGKPIRVNKAS+ +K +D+GAN+F+G+LDP VDE+LLY+TFSAFG I+ PK
Sbjct: 72 KVMNGLKLYGKPIRVNKASNDRKPIDIGANLFVGSLDPAVDERLLYETFSAFGGIIGLPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RDP +G KGFAF+++ SFE
Sbjct: 132 --------------------------------------IARDPTSGEPKGFAFVSFDSFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK-GDRHGSAAERLLAAQNPLSQADRPHQLFA 272
A+DA+I+A++GQ+L N+ I+V YA KKDSK G+RHG+AAERLLAAQ + A P Q +
Sbjct: 154 AADAAIEALNGQFLLNKNITVDYAIKKDSKNGERHGTAAERLLAAQARKNNA-LPTQPYP 212
Query: 273 DAPPPAPLPPPP 284
P AP PP
Sbjct: 213 QRPVGAPYAQPP 224
>gi|340502094|gb|EGR28811.1| splicing factor subunit 4, putative [Ichthyophthirius multifiliis]
Length = 267
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 137/295 (46%), Positives = 176/295 (59%), Gaps = 67/295 (22%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGG+D KV++ ++WELF Q G VVNVH+PKD++T HQGYGF+EF EEDADY+I
Sbjct: 11 DATIYVGGIDQKVTQEVLWELFSQCGIVVNVHLPKDKITGEHQGYGFVEFKSEEDADYSI 70
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIM+++KLYGKPI+VNKAS ++ +VGANIFIGNLD + E+ L+DTFS FG+I+
Sbjct: 71 KIMHLVKLYGKPIKVNKASQDKRTQEVGANIFIGNLDQSITEQQLHDTFSQFGLIISR-- 128
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I+RDPD SKG+AF++Y +FE
Sbjct: 129 -------------------------------------RIVRDPDNDESKGYAFVSYDNFE 151
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ---------- 263
A+DA+I+ M+GQ+ ++ I+V YAFKKDSKG+RHGSAAERLLAA P Q
Sbjct: 152 AADAAINTMNGQFFGSKKINVQYAFKKDSKGERHGSAAERLLAANKPQQQNTVVGHAVPV 211
Query: 264 -------ADR-PHQLFADAPPPAPLPPPPPPINIMGL----------PPPPPSGL 300
+R P L + P P PPP + I GL PPP P L
Sbjct: 212 PLVQKPIVNRIPDSLMINNQLPVPNQMPPPALYIPGLATNMPNLPIMPPPIPQRL 266
>gi|343425574|emb|CBQ69109.1| related to spliceosome-associated protein SAP-49 [Sporisorium
reilianum SRZ2]
Length = 272
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 120/226 (53%), Positives = 160/226 (70%), Gaps = 39/226 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT Y+G +DD+ ++ ++WEL +Q+GP+VN+H+PKDR+TQTHQGY F EF E+DADYA
Sbjct: 12 DATCYIGNIDDRATDAIVWELMIQAGPLVNLHLPKDRITQTHQGYAFAEFQTEQDADYAC 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K+MN +KLYGKPIRVNKAS+ +K +D+GAN+F+G+LD VDE+LLY+TFSAFG IL PK
Sbjct: 72 KVMNGLKLYGKPIRVNKASNDRKQIDIGANLFVGSLDAAVDERLLYETFSAFGGILGLPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+ RDP +G KGFAF+++ SFE
Sbjct: 132 --------------------------------------VARDPASGEPKGFAFVSFDSFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK-GDRHGSAAERLLAAQ 258
A+DA+I+A++GQ+L N+ I+V YA KKDSK G+RHG+AAERLLAAQ
Sbjct: 154 AADAAIEALNGQFLLNKNITVDYAIKKDSKNGERHGTAAERLLAAQ 199
>gi|452820612|gb|EME27652.1| splicing factor 3B subunit 4 [Galdieria sulphuraria]
Length = 265
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 125/266 (46%), Positives = 171/266 (64%), Gaps = 52/266 (19%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+YVG LD++VSE L+WEL VQ GPV +V++P+DR+T QGYGF+EF E DA YA
Sbjct: 22 EATLYVGNLDERVSEELLWELMVQVGPVKHVYIPRDRITGQTQGYGFVEFKNEMDAIYAT 81
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K++NM+++Y KP+R+ +AS+ ++++D+GAN+F+GNL EVDEKLLYDTFSAFG I++TP
Sbjct: 82 KVLNMVRVYAKPLRLQQASTDKRSMDIGANLFVGNLSQEVDEKLLYDTFSAFGAIIETP- 140
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDP+TG SKG+ FI + SFE
Sbjct: 141 -------------------------------------HIMRDPETGESKGYGFIKFDSFE 163
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQAD---RPHQL 270
ASDA+I+ M+GQ+L N ++V YAFKKD+K +RHGS AER+LAA+ A+ RPH +
Sbjct: 164 ASDAAIETMNGQFLGNNQVTVQYAFKKDTK-ERHGSQAERILAARARAVSANALLRPHSM 222
Query: 271 FADAPP----------PAPLPPPPPP 286
F+ P PA +P PP
Sbjct: 223 FSLGPQAALAYSGLSYPAMMPTAYPP 248
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEED 88
S D A ++VG L +V E L+++ F G ++ H+ +D T +GYGFI+F E
Sbjct: 105 SMDIGANLFVGNLSQEVDEKLLYDTFSAFGAIIETPHIMRDPETGESKGYGFIKFDSFEA 164
Query: 89 ADYAIKIMN 97
+D AI+ MN
Sbjct: 165 SDAAIETMN 173
>gi|388858107|emb|CCF48344.1| related to spliceosome-associated protein SAP-49 [Ustilago hordei]
Length = 297
Score = 250 bits (638), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 127/255 (49%), Positives = 168/255 (65%), Gaps = 45/255 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT Y+G +DD+ ++ ++WEL +Q+GP+VN+H+PKDR+TQ+HQGY F EF E+DADYA
Sbjct: 12 DATCYIGNIDDRATDAIVWELMIQAGPLVNLHLPKDRITQSHQGYAFAEFQTEQDADYAC 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K+MN +KLYGKPIRVNKAS+ +K +D+GAN+F+G+LDP VDE+LLY+TFSAFG I+ PK
Sbjct: 72 KVMNGLKLYGKPIRVNKASNDRKQIDIGANLFVGSLDPAVDERLLYETFSAFGGIIGLPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+ RDP G KGF F+++ SFE
Sbjct: 132 --------------------------------------VARDPAGGEPKGFGFVSFDSFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK-GDRHGSAAERLLAAQ----NPLSQADRPH 268
A+DA+I+A++GQ+L N I+V YA KKDSK G+RHG+AAERLLAAQ N L P
Sbjct: 154 AADAAIEALNGQFLLNNNITVDYAIKKDSKNGERHGTAAERLLAAQARKNNALPTQQYPQ 213
Query: 269 QLFADAPPPAPLPPP 283
Q A PP P+ P
Sbjct: 214 Q--AGQPPLGPMGAP 226
>gi|403335220|gb|EJY66784.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 307
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/249 (49%), Positives = 165/249 (66%), Gaps = 46/249 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+YVG LD KV+E L+WELF+Q G +VNVH+P+D+VT H GYGF+EF EEDADYAI
Sbjct: 19 EATLYVGNLDTKVNEELVWELFLQCGAIVNVHIPRDKVTNEHSGYGFVEFKTEEDADYAI 78
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIM+M+KL+GKPI+VNKAS ++ +VGAN+F+GNL +VDEK+L D FS+FG++L T
Sbjct: 79 KIMHMVKLFGKPIKVNKASQDKRTQEVGANVFVGNLHEDVDEKMLRDVFSSFGIVLST-- 136
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+IMRDP+T SK + F++Y +FE
Sbjct: 137 -------------------------------------KIMRDPETQVSKRYGFVSYDNFE 159
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
+SDASI AM+GQYLC +PI VSYA+KKD+ G++HG+ AER+LA P + P Q AD
Sbjct: 160 SSDASIQAMNGQYLCGKPIDVSYAYKKDAIGEKHGTLAERVLAFNKP----NLPGQKVAD 215
Query: 274 APPPAPLPP 282
+ LPP
Sbjct: 216 T---SKLPP 221
>gi|118350408|ref|XP_001008485.1| Splicing factor 3B subunit 4 [Tetrahymena thermophila]
gi|89290252|gb|EAR88240.1| Splicing factor 3B subunit 4 [Tetrahymena thermophila SB210]
Length = 325
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 132/262 (50%), Positives = 168/262 (64%), Gaps = 44/262 (16%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ DAT+YVGGLD KV++ ++WELF Q G V+NVH+P+D++T HQGYGF+E+ EEDADY
Sbjct: 9 NSDATLYVGGLDQKVTQEVLWELFSQCGIVINVHLPRDKITGEHQGYGFVEYKTEEDADY 68
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
AIKI+++IKLYGKPI+VNKAS ++ +VGANIFIGNLDP V E L +TFS FG+I+
Sbjct: 69 AIKILHLIKLYGKPIKVNKASQDKRTQEVGANIFIGNLDPSVTEMQLQETFSTFGLII-- 126
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
G+ I+RD D SKG+AFI+Y +
Sbjct: 127 ----------GR---------------------------RIVRDSDNNQSKGYAFISYDN 149
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
FE+SD +I AM+GQY ++ ISV YAFKKDSKG+RHGSAAERLLAA P +P Q
Sbjct: 150 FESSDNAISAMNGQYYGSQKISVQYAFKKDSKGERHGSAAERLLAANRP-----QPLQSG 204
Query: 272 ADAPPPAPLPPPPPPINIMGLP 293
PAPL P IN +P
Sbjct: 205 MGMNAPAPLVPSNKGINRSSIP 226
>gi|242824075|ref|XP_002488188.1| splicing factor 3b subunit 4 [Talaromyces stipitatus ATCC 10500]
gi|218713109|gb|EED12534.1| splicing factor 3b subunit 4 [Talaromyces stipitatus ATCC 10500]
Length = 352
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 120/228 (52%), Positives = 158/228 (69%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++V+++L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ QK ++VGA +F+GNLDP V E++LYDTFS FG +L
Sbjct: 70 AARIMNQVRLYGKPIRVNKASADKQKTVEVGAELFVGNLDPMVTEQVLYDTFSRFGTLLS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK I RD D SKG+ F+++A
Sbjct: 130 MPK--------------------------------------IARD-DANLSKGYGFVSFA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
F+ASDA+I MHGQYL N+ +SV YA+KKD KG+RHG AER+LAAQ
Sbjct: 151 DFDASDAAIANMHGQYLMNKEVSVQYAYKKDGKGERHGDQAERMLAAQ 198
>gi|430811379|emb|CCJ31130.1| unnamed protein product [Pneumocystis jirovecii]
Length = 285
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 122/226 (53%), Positives = 158/226 (69%), Gaps = 40/226 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ATIYVG LD++ ++ ++WELF+Q GPVVNVH+PKDRV+QTHQG+GF EF+ EDADYA
Sbjct: 12 EATIYVGNLDERTTDAILWELFLQCGPVVNVHLPKDRVSQTHQGFGFCEFLTVEDADYAC 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKN-LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+IMN IKLYGKPIRVNKAS+ +KN +++GA +F+GNLDP V+EK+LYDTFS FG+++ P
Sbjct: 72 RIMNQIKLYGKPIRVNKASADKKNTIEIGAELFVGNLDPLVNEKVLYDTFSVFGMLVAPP 131
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
K I RD D G SK F FI++ SF
Sbjct: 132 K--------------------------------------IARD-DNGQSKCFGFISFDSF 152
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
EA+DA+I+ M+ Q+L N+ +SVSYAFKKD KG+RHG AERLLA+Q
Sbjct: 153 EAADAAIEGMNNQFLMNKSVSVSYAFKKDGKGERHGDQAERLLASQ 198
>gi|212546197|ref|XP_002153252.1| splicing factor 3b subunit 4 [Talaromyces marneffei ATCC 18224]
gi|210064772|gb|EEA18867.1| splicing factor 3b subunit 4 [Talaromyces marneffei ATCC 18224]
Length = 351
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 120/228 (52%), Positives = 158/228 (69%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++V+++L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ QK ++VGA +F+GNLDP V E++LYDTFS FG +L
Sbjct: 70 AARIMNQVRLYGKPIRVNKASADKQKTVEVGAELFVGNLDPMVSEQVLYDTFSRFGTLLS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK I RD D SKG+ F+++A
Sbjct: 130 LPK--------------------------------------IARD-DANLSKGYGFVSFA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
F+ASDA+I MHGQYL N+ +SV YA+KKD KG+RHG AER+LAAQ
Sbjct: 151 DFDASDAAIANMHGQYLMNKEVSVQYAYKKDGKGERHGDEAERMLAAQ 198
>gi|119196451|ref|XP_001248829.1| hypothetical protein CIMG_02600 [Coccidioides immitis RS]
gi|392861968|gb|EAS37425.2| splicing factor 3b subunit 4 [Coccidioides immitis RS]
Length = 347
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 128/257 (49%), Positives = 169/257 (65%), Gaps = 46/257 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+YVG LD++V+++L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYVGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQ-KNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ + K ++VGA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 ASRIMNQVRLYGKPIRVNKASADKLKAIEVGAELFVGNLDPMVTEQVLYDTFSRFGPLIS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK + RD D SKG+ F+++A
Sbjct: 130 MPK--------------------------------------VARD-DANLSKGYGFVSFA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ------NPLSQA 264
+FEASD +I M+GQYL N+ ISV YA+KKD KG+RHG AER+LAAQ P +Q
Sbjct: 151 NFEASDDAIANMNGQYLMNKEISVQYAYKKDGKGERHGDQAERMLAAQARKHNVQPQTQV 210
Query: 265 DRPHQLFADAPPPAPLP 281
PH APP AP P
Sbjct: 211 LPPHVPGGHAPPMAPTP 227
>gi|299754121|ref|XP_001833772.2| splicing factor 3b subunit 4 [Coprinopsis cinerea okayama7#130]
gi|298410613|gb|EAU88064.2| splicing factor 3b subunit 4 [Coprinopsis cinerea okayama7#130]
Length = 332
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 151/216 (69%), Gaps = 38/216 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD++ ++ L+WEL +Q+GPVVNVH+PKDR++ HQGYGF EF+ EEDA+YA
Sbjct: 11 EATVYLGNLDERCTDALIWELMLQAGPVVNVHLPKDRISMAHQGYGFCEFLTEEDAEYAC 70
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKL+GKPIRVNKASS +K LDVGAN+F+GNLD VDE+LLYDTFSAFG++ T K
Sbjct: 71 KIMNQIKLWGKPIRVNKASSDKKQLDVGANLFVGNLDENVDERLLYDTFSAFGMMATTAK 130
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RDP TG SKG+ F++Y FE
Sbjct: 131 --------------------------------------IARDPSTGVSKGYGFVSYTDFE 152
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
+SDA+I++M+GQ+L N+ I+V YAFKKD KG+RHG+
Sbjct: 153 SSDAAIESMNGQFLMNKAITVQYAFKKDGKGERHGT 188
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A ++VG LD+ V E L+++ F G + + +D T +GYGF+ + E +D
Sbjct: 96 DVGANLFVGNLDENVDERLLYDTFSAFGMMATTAKIARDPSTGVSKGYGFVSYTDFESSD 155
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L K I V A
Sbjct: 156 AAIESMNGQFLMNKAITVQYA 176
>gi|58261610|ref|XP_568215.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134115791|ref|XP_773609.1| hypothetical protein CNBI2230 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256235|gb|EAL18962.1| hypothetical protein CNBI2230 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230297|gb|AAW46698.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 304
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 119/225 (52%), Positives = 150/225 (66%), Gaps = 38/225 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD++ ++ L+WEL +Q+GPV NV +PKDR++Q HQG+GF EFM E DA+YA+
Sbjct: 12 EATVYLGNLDERCTDALIWELMLQAGPVSNVFLPKDRISQAHQGFGFCEFMSEADAEYAV 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKLYGKPIRVNKAS +K +DVGAN+F+GNLDP VDE+ LYDTFS FG + + PK
Sbjct: 72 KIMNQIKLYGKPIRVNKASYDKKQVDVGANLFVGNLDPNVDEQTLYDTFSTFGTLAEQPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RDP TG SKG AFI Y FE
Sbjct: 132 --------------------------------------IARDPTTGLSKGHAFIAYNDFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
A+D +I+ M+GQ+ + I+ YAFKKD KG+RHGS AERLLAAQ
Sbjct: 154 AADLAIENMNGQFFGGKQITAQYAFKKDGKGERHGSQAERLLAAQ 198
>gi|258569671|ref|XP_002543639.1| splicing factor 3B subunit 4 [Uncinocarpus reesii 1704]
gi|237903909|gb|EEP78310.1| splicing factor 3B subunit 4 [Uncinocarpus reesii 1704]
Length = 348
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 129/258 (50%), Positives = 169/258 (65%), Gaps = 47/258 (18%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+YVG LD++V+++L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYVGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ QK ++VGA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 ASRIMNQVRLYGKPIRVNKASADKQKTIEVGAELFVGNLDPMVTEQVLYDTFSRFGSLIS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK + RD D SKG+ F+++A
Sbjct: 130 MPK--------------------------------------VARD-DANLSKGYGFVSFA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ------NPLSQA 264
+FEASD +I M+GQYL N+ ISV YA+KKD KG+RHG AER+LAAQ P +Q
Sbjct: 151 NFEASDDAIANMNGQYLMNKEISVQYAYKKDGKGERHGDQAERMLAAQARKHNVQPQTQV 210
Query: 265 DRPHQLFADAPPPAPLPP 282
P QL A PP P P
Sbjct: 211 -VPPQLAGGAVPPLPHTP 227
>gi|121703528|ref|XP_001270028.1| splicing factor 3b subunit 4 [Aspergillus clavatus NRRL 1]
gi|119398172|gb|EAW08602.1| splicing factor 3b subunit 4 [Aspergillus clavatus NRRL 1]
Length = 354
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 128/266 (48%), Positives = 173/266 (65%), Gaps = 53/266 (19%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++V+++L+WEL +Q+G +VNVH+PKDRVTQ+HQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN I+LYGKPIRVNKAS+ QK++++GA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 ASRIMNGIRLYGKPIRVNKASADKQKSVEIGAELFVGNLDPLVTEQVLYDTFSRFGTLVN 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK + RD D SKG+ F+++A
Sbjct: 130 IPK--------------------------------------VARD-DNNLSKGYGFVSFA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQL 270
FE+SDA+I M+GQYL N+ +SV YA+KKD KG+RHG AER+LAAQ R H +
Sbjct: 151 DFESSDAAIANMNGQYLMNKQVSVQYAYKKDGKGERHGDEAERMLAAQ------ARKHNV 204
Query: 271 FADAPPPAPLPP----PPPPINIMGL 292
PP PLPP P P+ GL
Sbjct: 205 ---RPPTQPLPPQFTTPATPMAAAGL 227
>gi|405119657|gb|AFR94429.1| splicing factor 3b subunit 4 [Cryptococcus neoformans var. grubii
H99]
Length = 304
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 119/225 (52%), Positives = 150/225 (66%), Gaps = 38/225 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD++ ++ L+WEL +Q+GPV NV +PKDR++Q HQG+GF EFM E DA+YA+
Sbjct: 12 EATVYLGNLDERCTDALIWELMLQAGPVSNVFLPKDRISQAHQGFGFCEFMSEADAEYAV 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKLYGKPIRVNKAS +K +DVGAN+F+GNLDP VDE+ LYDTFS FG + + PK
Sbjct: 72 KIMNQIKLYGKPIRVNKASYDKKQVDVGANLFVGNLDPNVDEQTLYDTFSTFGTLAEQPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RDP TG SKG AFI Y FE
Sbjct: 132 --------------------------------------IARDPTTGLSKGHAFIAYNDFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
A+D +I+ M+GQ+ + I+ YAFKKD KG+RHGS AERLLAAQ
Sbjct: 154 AADLAIENMNGQFFGGKQITAQYAFKKDGKGERHGSQAERLLAAQ 198
>gi|294925596|ref|XP_002778960.1| spliceosome-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239887806|gb|EER10755.1| spliceosome-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 388
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 126/238 (52%), Positives = 156/238 (65%), Gaps = 43/238 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVG LD KV E L+WELF+Q GP+ NV +P+DR+ +HQGYGF+EF +DADYA+
Sbjct: 21 DATIYVGNLDTKVDEELLWELFIQCGPIQNVSLPRDRIIGSHQGYGFVEFKNPDDADYAV 80
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLD-VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
KIMN+ KL+ KPIR NK+SS + D VGAN+FIGNL P+VDEK LYDTFSAFG I+
Sbjct: 81 KIMNLTKLFSKPIRCNKSSSDRIVRDEVGANLFIGNLGPDVDEKQLYDTFSAFGSIVVFC 140
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
KIM +TG SKGF F++Y F
Sbjct: 141 KIMR---------------------------------------SETGESKGFGFVSYDGF 161
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQL 270
EASDA++ M+GQYLCNR ISVSY++KKDSKG+RHG+AAER++AA SQ PH +
Sbjct: 162 EASDAAMAGMNGQYLCNRQISVSYSYKKDSKGERHGTAAERMIAANRESSQ---PHHV 216
>gi|406865924|gb|EKD18965.1| splicing factor 3b subunit 4 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 650
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/227 (53%), Positives = 160/227 (70%), Gaps = 40/227 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G +D++V+++L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNIDERVTDSLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ QK ++VGA +FIGNLDP VDEK LYDTFS FG LQ
Sbjct: 70 AARIMNQVRLYGKPIRVNKASADKQKPIEVGAELFIGNLDPMVDEKTLYDTFSRFGS-LQ 128
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
P P+I RD ++G SKG+ F++YA
Sbjct: 129 AP-------------------------------------PKIARD-ESGLSKGYGFVSYA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAA 257
+FEASD +I M+GQYL N+ +SV YA+KKD KG+RHG AER+LA+
Sbjct: 151 TFEASDDAIANMNGQYLMNKDVSVQYAYKKDGKGERHGDEAERMLAS 197
>gi|321257040|ref|XP_003193447.1| hypothetical protein CGB_D2450C [Cryptococcus gattii WM276]
gi|317459917|gb|ADV21660.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 308
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/225 (53%), Positives = 149/225 (66%), Gaps = 38/225 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD+K ++ L+WEL +Q+GPV NV +PKDR++Q HQG+GF EFM E DA+YA+
Sbjct: 12 EATVYLGNLDEKCTDALIWELMLQAGPVSNVFLPKDRISQAHQGFGFCEFMSEADAEYAV 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKLYGKPIRVNKAS +K +DVGAN+F+GNLDP VDE+ LYDTFS FG + PK
Sbjct: 72 KIMNQIKLYGKPIRVNKASYDKKQVDVGANLFVGNLDPNVDEQTLYDTFSTFGTLADQPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RDP TG SKG AFI Y FE
Sbjct: 132 --------------------------------------IARDPTTGLSKGHAFIAYNDFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
A+D +I+ M+GQ+ + I+ YAFKKD KG+RHGS AERLLAAQ
Sbjct: 154 AADLAIENMNGQFFGGKQITAQYAFKKDGKGERHGSQAERLLAAQ 198
>gi|345567290|gb|EGX50224.1| hypothetical protein AOL_s00076g299 [Arthrobotrys oligospora ATCC
24927]
Length = 385
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/228 (53%), Positives = 154/228 (67%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D DAT+Y+G LD++V++ L+WEL +Q+G + NVH+PKDRVTQTHQG+GF+EF+ EEDA+Y
Sbjct: 9 DKDATVYIGNLDERVTDALVWELMLQAGRISNVHLPKDRVTQTHQGFGFVEFVSEEDAEY 68
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN I+LYGKPIRVNKAS+ QK ++VGA +FIGNLD VDEK LYDTF FG I
Sbjct: 69 AARIMNQIRLYGKPIRVNKASADKQKTVEVGAELFIGNLDSMVDEKTLYDTFMTFGTITA 128
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK I RD + G S+GF F+ +
Sbjct: 129 PPK--------------------------------------IARD-EAGISRGFGFVQFD 149
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+FE+SD +IDAM GQYL N+ ISVSYAFKKD KG+RHG AERLLA+Q
Sbjct: 150 NFESSDKAIDAMQGQYLMNKEISVSYAFKKDGKGERHGDQAERLLASQ 197
>gi|145250071|ref|XP_001396549.1| spliceosome-associated protein 49 [Aspergillus niger CBS 513.88]
gi|134082060|emb|CAK42179.1| unnamed protein product [Aspergillus niger]
gi|350636041|gb|EHA24401.1| hypothetical protein ASPNIDRAFT_56267 [Aspergillus niger ATCC 1015]
Length = 351
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 125/252 (49%), Positives = 168/252 (66%), Gaps = 49/252 (19%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++V+++L+WEL +Q+G +VNVH+PKDRVTQ+HQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN I+LYGKPIRVNKAS+ QK++++GA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 ASRIMNGIRLYGKPIRVNKASADKQKSVEIGAELFVGNLDPMVTEQVLYDTFSRFGNLVN 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK I RD D SKG+ F+++A
Sbjct: 130 IPK--------------------------------------IARD-DNNLSKGYGFVSFA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQL 270
FE+SDA+I M+GQYL N+ +SV YA+KKD KG+RHG AER+LAAQ R H +
Sbjct: 151 DFESSDAAITNMNGQYLMNKQVSVQYAYKKDGKGERHGDEAERMLAAQ------ARKHNV 204
Query: 271 FADAPPPAPLPP 282
PP PLPP
Sbjct: 205 ---RPPTQPLPP 213
>gi|358375675|dbj|GAA92254.1| splicing factor 3b subunit 4 [Aspergillus kawachii IFO 4308]
Length = 352
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 125/252 (49%), Positives = 168/252 (66%), Gaps = 49/252 (19%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++V+++L+WEL +Q+G +VNVH+PKDRVTQ+HQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN I+LYGKPIRVNKAS+ QK++++GA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 ASRIMNGIRLYGKPIRVNKASADKQKSVEIGAELFVGNLDPMVTEQVLYDTFSRFGNLVN 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK I RD D SKG+ F+++A
Sbjct: 130 IPK--------------------------------------IARD-DNNLSKGYGFVSFA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQL 270
FE+SDA+I M+GQYL N+ +SV YA+KKD KG+RHG AER+LAAQ R H +
Sbjct: 151 DFESSDAAITNMNGQYLMNKQVSVQYAYKKDGKGERHGDEAERMLAAQ------ARKHNV 204
Query: 271 FADAPPPAPLPP 282
PP PLPP
Sbjct: 205 ---RPPTQPLPP 213
>gi|378730244|gb|EHY56703.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 345
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 131/276 (47%), Positives = 178/276 (64%), Gaps = 52/276 (18%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D D+TIY+G LD++V++ L+WELF+Q+G +VNVH+PKDRVTQTHQGYGF+EF EEDA+Y
Sbjct: 10 DKDSTIYIGNLDERVTDALVWELFLQAGRIVNVHLPKDRVTQTHQGYGFVEFTSEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ QK+++VGA +F+GNLDP VDE++LY+TF FG ++
Sbjct: 70 AARIMNQVRLYGKPIRVNKASADKQKSVEVGAELFVGNLDPMVDERMLYETFGRFGTLVA 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PKI + + NL SKG+ F+++A
Sbjct: 130 APKI----------------ARDENNL-----------------------SKGYGFVSFA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQL 270
FE+SD +I M+GQYL N+ ++V YA+KKD KG+RHG AER+LAAQ + H +
Sbjct: 151 DFESSDDAIANMNGQYLMNKEVTVQYAYKKDGKGERHGDQAERMLAAQA------KAHGV 204
Query: 271 FADAPPPAPLPPPPPPINIMGLPPPP--PSGLRASA 304
P PA +P PP G+PP P P+G A A
Sbjct: 205 ---QPTPATIPLGGPPA-YGGVPPTPTTPAGFGAPA 236
>gi|119467844|ref|XP_001257728.1| splicing factor 3b subunit 4 [Neosartorya fischeri NRRL 181]
gi|119405880|gb|EAW15831.1| splicing factor 3b subunit 4 [Neosartorya fischeri NRRL 181]
Length = 352
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 124/252 (49%), Positives = 167/252 (66%), Gaps = 49/252 (19%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++V+++L+WEL +Q+G +VNVH+PKDRVTQ+HQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN I+LYGKPIRVNKAS+ QK +++GA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 ASRIMNGIRLYGKPIRVNKASADKQKAVEIGAELFVGNLDPLVTEQVLYDTFSRFGTLVN 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK + RD D SKG+ F+++A
Sbjct: 130 IPK--------------------------------------VARD-DNNLSKGYGFVSFA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQL 270
FE+SDA+I M+GQYL N+ +SV YA+KKD KG+RHG AER+LAAQ R H +
Sbjct: 151 DFESSDAAIANMNGQYLMNKQVSVQYAYKKDGKGERHGDQAERMLAAQ------ARKHNV 204
Query: 271 FADAPPPAPLPP 282
PP PLPP
Sbjct: 205 ---RPPTQPLPP 213
>gi|70984076|ref|XP_747559.1| splicing factor 3b subunit 4 [Aspergillus fumigatus Af293]
gi|66845186|gb|EAL85521.1| splicing factor 3b subunit 4 [Aspergillus fumigatus Af293]
gi|159122344|gb|EDP47465.1| splicing factor 3b subunit 4 [Aspergillus fumigatus A1163]
Length = 352
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 124/252 (49%), Positives = 167/252 (66%), Gaps = 49/252 (19%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++V+++L+WEL +Q+G +VNVH+PKDRVTQ+HQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN I+LYGKPIRVNKAS+ QK +++GA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 ASRIMNGIRLYGKPIRVNKASADKQKAVEIGAELFVGNLDPLVTEQVLYDTFSRFGTLVN 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK + RD D SKG+ F+++A
Sbjct: 130 IPK--------------------------------------VARD-DNNLSKGYGFVSFA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQL 270
FE+SDA+I M+GQYL N+ +SV YA+KKD KG+RHG AER+LAAQ R H +
Sbjct: 151 DFESSDAAIANMNGQYLMNKQVSVQYAYKKDGKGERHGDQAERMLAAQ------ARKHNV 204
Query: 271 FADAPPPAPLPP 282
PP PLPP
Sbjct: 205 ---RPPTQPLPP 213
>gi|56755563|gb|AAW25960.1| SJCHGC01449 protein [Schistosoma japonicum]
Length = 152
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 120/185 (64%), Positives = 138/185 (74%), Gaps = 38/185 (20%)
Query: 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMG 85
G E + DATIYVGGLD+KV+E+++WELF+Q+GPVVNVHMPKDR+ HQGYGF+EFM
Sbjct: 4 GVMEERNQDATIYVGGLDEKVNESILWELFLQAGPVVNVHMPKDRINMQHQGYGFVEFMT 63
Query: 86 EEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
EEDADYA++IMNMIKLYGKPIRVNKAS++QKNLD+GANIFIGNLDPEVDEKLLYDTFSAF
Sbjct: 64 EEDADYAMRIMNMIKLYGKPIRVNKASANQKNLDIGANIFIGNLDPEVDEKLLYDTFSAF 123
Query: 146 GVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFA 205
GVILQTPK IMRDP+TGNSKG+A
Sbjct: 124 GVILQTPK--------------------------------------IMRDPETGNSKGYA 145
Query: 206 FINYA 210
FIN+A
Sbjct: 146 FINFA 150
>gi|425773760|gb|EKV12094.1| Splicing factor 3b subunit 4 [Penicillium digitatum PHI26]
gi|425782322|gb|EKV20241.1| Splicing factor 3b subunit 4 [Penicillium digitatum Pd1]
Length = 366
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 118/228 (51%), Positives = 163/228 (71%), Gaps = 32/228 (14%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++VS++L+WEL +Q+G +VNVH+PKDRVTQ HQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQLHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A KIMN I+L+GKPIRVNKAS+ QK +++GA +F+GNLDP V E++L+DTFS FG ++
Sbjct: 70 ASKIMNGIRLHGKPIRVNKASADKQKAVEIGAELFVGNLDPMVAEQVLFDTFSRFGNLVN 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK++++ L +I RD D SKG+ F+++A
Sbjct: 130 PPKLISL------------------------------LSSQIARD-DNNLSKGYGFVSFA 158
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
FE+SDA+I M+GQYL N+ +SV YA+KKD KG+RHG AER+LAAQ
Sbjct: 159 DFESSDAAITNMNGQYLMNKQVSVQYAYKKDGKGERHGDEAERMLAAQ 206
>gi|388579997|gb|EIM20315.1| RNA-binding domain-containing protein [Wallemia sebi CBS 633.66]
Length = 260
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 134/285 (47%), Positives = 175/285 (61%), Gaps = 57/285 (20%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ATIY+G + + VS+ ++WEL +Q+GPV +VH+PKDRV+ +HQG+GF EF+ +EDA+YA
Sbjct: 14 EATIYIGNIPEAVSDAIIWELMLQAGPVASVHLPKDRVSMSHQGFGFCEFVNDEDAEYAC 73
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKLYGKPIRVNKAS+ +K +DVGAN+FIGNLDP VDE+LL+DTFS FG+++ K
Sbjct: 74 KIMNQIKLYGKPIRVNKASTDRKQIDVGANLFIGNLDPGVDERLLFDTFSTFGLMMDVAK 133
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RD DTG SKG+ FI Y F+
Sbjct: 134 --------------------------------------IARD-DTGYSKGYGFIQYNDFD 154
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQA-----DRPH 268
+SD +I AM+GQYL N+P++V YAFKKD KG+RHG+ AER+LAA+ + A P
Sbjct: 155 SSDQAISAMNGQYLMNKPLTVDYAFKKDGKGERHGTEAERMLAAEAKRNNALPMPGAIPG 214
Query: 269 Q-------LFADA----PPPAPLPPP--PPPINIMGLPPPPPSGL 300
Q +FA A P P P P P +PPP P G
Sbjct: 215 QPFMQYQGMFAGALSGNAPVMPGQPAATPTPYGFTPVPPPAPYGF 259
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D A +++G LD V E L+++ F G +++V T +GYGFI++ + +D
Sbjct: 99 DVGANLFIGNLDPGVDERLLFDTFSTFGLMMDVAKIARDDTGYSKGYGFIQYNDFDSSDQ 158
Query: 92 AIKIMNMIKLYGKPIRVNKA 111
AI MN L KP+ V+ A
Sbjct: 159 AISAMNGQYLMNKPLTVDYA 178
>gi|238493972|ref|XP_002378222.1| splicing factor 3b subunit 4 [Aspergillus flavus NRRL3357]
gi|317148789|ref|XP_001822912.2| spliceosome-associated protein 49 [Aspergillus oryzae RIB40]
gi|220694872|gb|EED51215.1| splicing factor 3b subunit 4 [Aspergillus flavus NRRL3357]
Length = 354
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 129/268 (48%), Positives = 175/268 (65%), Gaps = 52/268 (19%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++V+++L+WEL +Q+G +VNVH+PKDRVTQ+HQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN I+LYGKPIRVNKAS+ QK++++GA +F+GNLDP V E++LY+TFS FG
Sbjct: 70 ASRIMNGIRLYGKPIRVNKASADKQKSVEIGAELFVGNLDPMVTEQVLYNTFSRFG---- 125
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
N+I L P+I RD D SKG+ F+++
Sbjct: 126 -----NLINL-----------------------------PKIARD-DNNLSKGYGFVSFG 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQL 270
FE+SDA+I M+GQYL N+ +SV YA+KKD KG+RHG AER+LAAQ R H +
Sbjct: 151 DFESSDAAIANMNGQYLMNKQVSVQYAYKKDGKGERHGDQAERMLAAQ------ARKHNV 204
Query: 271 FADAPPPAPLPPPPPPINIMGLPPPPPS 298
PP PL P P + G P PP+
Sbjct: 205 ---RPPTQPL---PSPFSGSGTPMVPPA 226
>gi|399218847|emb|CCF75734.1| unnamed protein product [Babesia microti strain RI]
Length = 237
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/234 (50%), Positives = 156/234 (66%), Gaps = 46/234 (19%)
Query: 34 DATIYVG-------GLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
+AT+Y+G LD +V E ++WELF Q G V NVH+P+D+VT HQGYGF+EF E
Sbjct: 17 EATLYIGTKSVDSGNLDPQVDEEILWELFTQVGIVRNVHIPRDKVTNQHQGYGFVEFDNE 76
Query: 87 EDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFG 146
+ADYA K+MN +K+Y KPIR NKAS ++ ++GAN+FIGNLDP+VDEKLLYDTFSAFG
Sbjct: 77 TEADYAQKVMNALKVYHKPIRCNKASQDKRTYEIGANLFIGNLDPDVDEKLLYDTFSAFG 136
Query: 147 VILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAF 206
++L T +I+R+ +TG KGF F
Sbjct: 137 LVLST---------------------------------------KIVREEETGLGKGFGF 157
Query: 207 INYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNP 260
+++ SF++SDA++ +M+GQYLCNRPI VSYA+KKD+ G+RHGSAAERLLAA P
Sbjct: 158 VSFDSFDSSDAALASMNGQYLCNRPIQVSYAYKKDTTGERHGSAAERLLAANRP 211
>gi|226290828|gb|EEH46282.1| spliceosome associated protein [Paracoccidioides brasiliensis Pb18]
Length = 390
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/228 (51%), Positives = 158/228 (69%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++V+++L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ QK ++VGA +FIGNLDP V E++LYDTFS FG ++
Sbjct: 70 AARIMNQVRLYGKPIRVNKASADKQKTVEVGAELFIGNLDPMVTEQILYDTFSRFGSLIS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK I RD D SKG+ F++++
Sbjct: 130 APK--------------------------------------IARD-DANLSKGYGFVSFS 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+FEASD +I M+GQYL N+ +SV YA+KKD KG+RHG AER+LAAQ
Sbjct: 151 NFEASDDAIANMNGQYLMNKEVSVQYAYKKDGKGERHGDQAERMLAAQ 198
>gi|115398490|ref|XP_001214834.1| spliceosome-associated protein 49 [Aspergillus terreus NIH2624]
gi|114191717|gb|EAU33417.1| spliceosome-associated protein 49 [Aspergillus terreus NIH2624]
Length = 349
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/252 (49%), Positives = 170/252 (67%), Gaps = 43/252 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+YVG LD++V+++L+WEL +Q+G +VNVH+PKDRVTQ+HQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYVGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN I+LYGKPIRVNKAS+ QK++++GA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 ASRIMNGIRLYGKPIRVNKASADKQKSVEIGAELFVGNLDPMVTEQVLYDTFSRFGNLIN 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK A++F + RD D SKG+ F+++
Sbjct: 130 IPK---------------------------ASLF-----SWVARD-DNNLSKGYGFVSFG 156
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQL 270
FE+SDA+I M+GQYL N+ +SV YA+KKD KG+RHG AER+LAAQ R H +
Sbjct: 157 DFESSDAAIANMNGQYLMNKQVSVQYAYKKDGKGERHGDQAERMLAAQ------ARKHNV 210
Query: 271 FADAPPPAPLPP 282
P PLPP
Sbjct: 211 RV---PAQPLPP 219
>gi|239608889|gb|EEQ85876.1| spliceosome-associated protein 49 [Ajellomyces dermatitidis ER-3]
Length = 383
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/228 (51%), Positives = 158/228 (69%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++V+++L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ QK ++VGA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 AARIMNQVRLYGKPIRVNKASADKQKTVEVGAELFVGNLDPMVTEQVLYDTFSRFGSLIS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK I RD D SKG+ F++++
Sbjct: 130 APK--------------------------------------IARD-DANLSKGYGFVSFS 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+FEASD +I M+GQYL N+ ISV YA+KKD KG+RHG AER+LAAQ
Sbjct: 151 NFEASDDAIANMNGQYLMNKEISVQYAYKKDGKGERHGDQAERMLAAQ 198
>gi|261187642|ref|XP_002620240.1| spliceosome-associated protein 49 [Ajellomyces dermatitidis
SLH14081]
gi|239594131|gb|EEQ76712.1| spliceosome-associated protein 49 [Ajellomyces dermatitidis
SLH14081]
gi|327357210|gb|EGE86067.1| splicing factor 3b subunit 4 [Ajellomyces dermatitidis ATCC 18188]
Length = 383
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/228 (51%), Positives = 158/228 (69%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++V+++L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ QK ++VGA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 AARIMNQVRLYGKPIRVNKASADKQKTVEVGAELFVGNLDPMVTEQVLYDTFSRFGSLIS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK I RD D SKG+ F++++
Sbjct: 130 APK--------------------------------------IARD-DANLSKGYGFVSFS 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+FEASD +I M+GQYL N+ ISV YA+KKD KG+RHG AER+LAAQ
Sbjct: 151 NFEASDDAIANMNGQYLMNKEISVQYAYKKDGKGERHGDQAERMLAAQ 198
>gi|67540662|ref|XP_664105.1| hypothetical protein AN6501.2 [Aspergillus nidulans FGSC A4]
gi|40738651|gb|EAA57841.1| hypothetical protein AN6501.2 [Aspergillus nidulans FGSC A4]
gi|259480068|tpe|CBF70863.1| TPA: splicing factor 3b subunit 4 (AFU_orthologue; AFUA_6G05180)
[Aspergillus nidulans FGSC A4]
Length = 352
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/228 (51%), Positives = 161/228 (70%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++VS++L+WEL +Q+G +VNVH+PKDRVTQ+HQGYGF+EF EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN I+LYGKPIRVNKAS+ QK++++GA +F+GNLDP V E++LYDTFS FG
Sbjct: 70 ASRIMNGIRLYGKPIRVNKASADKQKSVEIGAELFVGNLDPMVTEQVLYDTFSRFG---- 125
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
N++ L P++ RD D+ SKG+ F+++A
Sbjct: 126 -----NLVNL-----------------------------PKVARD-DSNLSKGYGFVSFA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
FE+SDA+I M+GQYL N+ +SV YA+KKD KG+RHG AER+LAAQ
Sbjct: 151 DFESSDAAIANMNGQYLMNKQVSVQYAYKKDGKGERHGDQAERMLAAQ 198
>gi|154276886|ref|XP_001539288.1| hypothetical protein HCAG_06893 [Ajellomyces capsulatus NAm1]
gi|150414361|gb|EDN09726.1| hypothetical protein HCAG_06893 [Ajellomyces capsulatus NAm1]
Length = 387
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 158/228 (69%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++++++L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNLDERITDSLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ QK ++VGA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 AARIMNQVRLYGKPIRVNKASADKQKTVEVGAELFVGNLDPMVTEQVLYDTFSRFGSLIS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK I RD D SKG+ F++++
Sbjct: 130 APK--------------------------------------IARD-DANLSKGYGFVSFS 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+FEASD +I M+GQYL N+ +SV YA+KKD KG+RHG AER+LAAQ
Sbjct: 151 NFEASDDAIANMNGQYLMNKEVSVQYAYKKDGKGERHGDQAERMLAAQ 198
>gi|156088689|ref|XP_001611751.1| RNA recognition motif domaining containing protein [Babesia bovis]
gi|154799005|gb|EDO08183.1| RNA recognition motif domaining containing protein [Babesia bovis]
Length = 280
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 124/277 (44%), Positives = 171/277 (61%), Gaps = 64/277 (23%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+YVG +D +V E L+WE FVQ GPV ++H+P+D+VT HQGY F+EF ++DADYAI
Sbjct: 17 EATLYVGNVDTQVDEELLWEFFVQVGPVKHLHIPRDKVTGHHQGYAFVEFDTDDDADYAI 76
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+I+N +KLY KP+R+NKAS ++ ++GAN+FIGNLDP+VD+K L+DTF++FG
Sbjct: 77 RILNFVKLYNKPLRLNKASRDKQTFEIGANLFIGNLDPDVDDKQLHDTFASFG------- 129
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
N+ N ++RD D + K FAF++Y SFE
Sbjct: 130 ----------------------------NVISAN----VVRDGDATDRKAFAFVSYDSFE 157
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA++ AM+GQ++CN+PI VSYA+KKD+KG+RHGSAAERL+A A+RPH+
Sbjct: 158 ASDAALAAMNGQFICNKPIHVSYAYKKDTKGERHGSAAERLIA-------ANRPHEYLTQ 210
Query: 274 A----------------PPPAPLPPPPPPINIMGLPP 294
PPP P PP I+ LPP
Sbjct: 211 MGVAPYGTSGSNAMPVFPPPMAAPVVVPP--IVQLPP 245
>gi|295669139|ref|XP_002795118.1| spliceosome associated protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285811|gb|EEH41377.1| spliceosome associated protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 389
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 117/228 (51%), Positives = 157/228 (68%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++V+++L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ K ++VGA +FIGNLDP V E++LYDTFS FG ++
Sbjct: 70 AARIMNQVRLYGKPIRVNKASADKHKTVEVGAELFIGNLDPMVTEQILYDTFSRFGSLIS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK I RD D SKG+ F++++
Sbjct: 130 APK--------------------------------------IARD-DANLSKGYGFVSFS 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+FEASD +I M+GQYL N+ +SV YA+KKD KG+RHG AER+LAAQ
Sbjct: 151 NFEASDDAIANMNGQYLMNKEVSVQYAYKKDGKGERHGDQAERMLAAQ 198
>gi|296810102|ref|XP_002845389.1| splicing factor 3B subunit 4 [Arthroderma otae CBS 113480]
gi|238842777|gb|EEQ32439.1| splicing factor 3B subunit 4 [Arthroderma otae CBS 113480]
Length = 371
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 118/228 (51%), Positives = 157/228 (68%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++V++ L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVTDKLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFNSEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ QK ++VGA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 ASRIMNQVRLYGKPIRVNKASADKQKTVEVGAELFVGNLDPMVTEQVLYDTFSRFGSLIS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK + RD D+ SKG+ FI+++
Sbjct: 130 LPK--------------------------------------VARD-DSNLSKGYGFISFS 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+FEASD +I M+GQYL N+ ISV YA+KKD KG+RHG AER+LAAQ
Sbjct: 151 NFEASDDAIANMNGQYLMNKEISVQYAYKKDGKGERHGDEAERMLAAQ 198
>gi|336380658|gb|EGO21811.1| hypothetical protein SERLADRAFT_397224 [Serpula lacrymans var.
lacrymans S7.9]
Length = 183
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 115/211 (54%), Positives = 144/211 (68%), Gaps = 38/211 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD++ ++ L+WEL +Q+GPVVNVH+PKDR++ HQGYGF EF+ EEDA+YA
Sbjct: 11 EATVYLGNLDERCTDALVWELMLQAGPVVNVHLPKDRISMAHQGYGFCEFLTEEDAEYAC 70
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKL+GKPIRVNKASS +K LDVGAN+FIGNLD VDE+LLYDTFSAFGV+ T K
Sbjct: 71 KIMNQIKLWGKPIRVNKASSDKKQLDVGANLFIGNLDENVDERLLYDTFSAFGVMATTAK 130
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RDP TG SKG+ F +Y FE
Sbjct: 131 --------------------------------------IARDPGTGKSKGYGFASYTDFE 152
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
+SDA+ ++M+GQ+L N+ ISV YAFKKD KG
Sbjct: 153 SSDAATESMNGQFLMNKAISVQYAFKKDGKG 183
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +++G LD+ V E L+++ F G + + +D T +GYGF + E +D
Sbjct: 96 DVGANLFIGNLDENVDERLLYDTFSAFGVMATTAKIARDPGTGKSKGYGFASYTDFESSD 155
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
A + MN L K I V A
Sbjct: 156 AATESMNGQFLMNKAISVQYA 176
>gi|225554276|gb|EEH02576.1| splicing factor 3b subunit 4 [Ajellomyces capsulatus G186AR]
Length = 387
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 158/228 (69%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++++++L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNLDERITDSLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ QK ++VGA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 AARIMNQVRLYGKPIRVNKASADKQKTVEVGAELFVGNLDPMVTEQVLYDTFSRFGSLIS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK I RD D SKG+ F++++
Sbjct: 130 APK--------------------------------------IARD-DANLSKGYGFVSFS 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+FEASD +I M+GQYL N+ +SV YA+KKD KG+RHG AER+LAAQ
Sbjct: 151 NFEASDDAIANMNGQYLMNKEVSVQYAYKKDGKGERHGDQAERMLAAQ 198
>gi|320040614|gb|EFW22547.1| splicing factor 3b subunit 4 [Coccidioides posadasii str. Silveira]
Length = 347
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 122/244 (50%), Positives = 163/244 (66%), Gaps = 46/244 (18%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+YVG LD++V+++L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYVGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQ-KNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ + K ++VGA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 ASRIMNQVRLYGKPIRVNKASADKLKAIEVGAELFVGNLDPMVTEQVLYDTFSRFGPLIS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK + RD D SKG+ F+++A
Sbjct: 130 MPK--------------------------------------VARD-DANLSKGYGFVSFA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ------NPLSQA 264
+FEASD +I M+GQYL N+ ISV YA+KKD KG+RHG AER+LAAQ P +Q
Sbjct: 151 NFEASDDAIANMNGQYLMNKEISVQYAYKKDGKGERHGDQAERMLAAQARKHNVQPQTQV 210
Query: 265 DRPH 268
PH
Sbjct: 211 LPPH 214
>gi|303322388|ref|XP_003071187.1| Splicing factor 3B subunit 4 , putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240110886|gb|EER29042.1| Splicing factor 3B subunit 4 , putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 347
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 122/244 (50%), Positives = 163/244 (66%), Gaps = 46/244 (18%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+YVG LD++V+++L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYVGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQ-KNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ + K ++VGA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 ASRIMNQVRLYGKPIRVNKASADKLKAIEVGAELFVGNLDPMVTEQVLYDTFSRFGPLIS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK + RD D SKG+ F+++A
Sbjct: 130 MPK--------------------------------------VARD-DANLSKGYGFVSFA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ------NPLSQA 264
+FEASD +I M+GQYL N+ ISV YA+KKD KG+RHG AER+LAAQ P +Q
Sbjct: 151 NFEASDDAIANMNGQYLMNKEISVQYAYKKDGKGERHGDQAERMLAAQARKHNVQPQTQV 210
Query: 265 DRPH 268
PH
Sbjct: 211 LPPH 214
>gi|325094983|gb|EGC48293.1| splicing factor 3B [Ajellomyces capsulatus H88]
Length = 387
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 158/228 (69%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++++++L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNLDERITDSLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ QK ++VGA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 AARIMNQVRLYGKPIRVNKASADKQKMVEVGAELFVGNLDPMVTEQVLYDTFSRFGSLIS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK I RD D SKG+ F++++
Sbjct: 130 APK--------------------------------------IARD-DANLSKGYGFVSFS 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+FEASD +I M+GQYL N+ +SV YA+KKD KG+RHG AER+LAAQ
Sbjct: 151 NFEASDDAIANMNGQYLMNKEVSVQYAYKKDGKGERHGDQAERMLAAQ 198
>gi|315044761|ref|XP_003171756.1| splicing factor 3B subunit 4 [Arthroderma gypseum CBS 118893]
gi|311344099|gb|EFR03302.1| splicing factor 3B subunit 4 [Arthroderma gypseum CBS 118893]
Length = 382
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/228 (51%), Positives = 157/228 (68%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++V++ L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVTDKLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFNSEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ QK ++VGA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 ASRIMNQVRLYGKPIRVNKASADKQKAVEVGAELFVGNLDPMVTEQVLYDTFSRFGSLIS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK + RD D+ SKG+ FI+++
Sbjct: 130 LPK--------------------------------------VARD-DSNLSKGYGFISFS 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+FEASD +I M+GQYL N+ ISV YA+KKD KG+RHG AER+LAAQ
Sbjct: 151 NFEASDDAIANMNGQYLMNKEISVQYAYKKDGKGERHGDEAERMLAAQ 198
>gi|327297502|ref|XP_003233445.1| splicing factor 3b subunit 4 [Trichophyton rubrum CBS 118892]
gi|326464751|gb|EGD90204.1| splicing factor 3b subunit 4 [Trichophyton rubrum CBS 118892]
Length = 379
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 118/228 (51%), Positives = 157/228 (68%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++V++ L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVTDKLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFNSEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ QK ++VGA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 ASRIMNQVRLYGKPIRVNKASADKQKAVEVGAELFVGNLDPMVTEQVLYDTFSRFGSLIS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK + RD D+ SKG+ FI+++
Sbjct: 130 LPK--------------------------------------VARD-DSNLSKGYGFISFS 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+FEASD +I M+GQYL N+ ISV YA+KKD KG+RHG AER+LAAQ
Sbjct: 151 NFEASDDAIANMNGQYLMNKEISVQYAYKKDGKGERHGDQAERMLAAQ 198
>gi|302510905|ref|XP_003017404.1| hypothetical protein ARB_04284 [Arthroderma benhamiae CBS 112371]
gi|291180975|gb|EFE36759.1| hypothetical protein ARB_04284 [Arthroderma benhamiae CBS 112371]
Length = 379
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 118/228 (51%), Positives = 157/228 (68%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++V++ L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVTDKLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFNSEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ QK ++VGA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 ASRIMNQVRLYGKPIRVNKASADKQKAVEVGAELFVGNLDPMVTEQVLYDTFSRFGSLIS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK + RD D+ SKG+ FI+++
Sbjct: 130 LPK--------------------------------------VARD-DSNLSKGYGFISFS 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+FEASD +I M+GQYL N+ ISV YA+KKD KG+RHG AER+LAAQ
Sbjct: 151 NFEASDDAIANMNGQYLMNKEISVQYAYKKDGKGERHGDQAERMLAAQ 198
>gi|302668184|ref|XP_003025667.1| hypothetical protein TRV_00155 [Trichophyton verrucosum HKI 0517]
gi|291189788|gb|EFE45056.1| hypothetical protein TRV_00155 [Trichophyton verrucosum HKI 0517]
Length = 379
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 118/228 (51%), Positives = 157/228 (68%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++V++ L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVTDKLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFNSEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ QK ++VGA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 ASRIMNQVRLYGKPIRVNKASADKQKAVEVGAELFVGNLDPMVTEQVLYDTFSRFGSLIS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK + RD D+ SKG+ FI+++
Sbjct: 130 LPK--------------------------------------VARD-DSNLSKGYGFISFS 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+FEASD +I M+GQYL N+ ISV YA+KKD KG+RHG AER+LAAQ
Sbjct: 151 NFEASDDAIANMNGQYLMNKEISVQYAYKKDGKGERHGDQAERMLAAQ 198
>gi|346974668|gb|EGY18120.1| splicing factor 3B subunit 4 [Verticillium dahliae VdLs.17]
Length = 498
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 152/228 (66%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D DAT+Y+G +D++ + T+++E+ +Q GP+ N+HMP+DRVTQTHQG+GF+EF DA+Y
Sbjct: 10 DKDATVYIGNIDERATSTMVYEIMLQMGPIHNIHMPRDRVTQTHQGFGFVEFRTPGDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +MN +KLYGK +RVNKAS+ QK +VGA +F+GNLDP VDEK+LYDTFS FG +L
Sbjct: 70 AANVMNGVKLYGKSLRVNKASADKQKQAEVGAELFVGNLDPMVDEKILYDTFSRFGPLLT 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK+ D+GNSKGF FI++A
Sbjct: 130 LPKVARE---------------------------------------DSGNSKGFGFISFA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
FE+SDA+++ +HGQYL ++ +SV YAFKKD KG+RHG AAER LAAQ
Sbjct: 151 DFESSDAAVENLHGQYLLSKEVSVQYAFKKDGKGERHGDAAERELAAQ 198
>gi|147898449|ref|NP_001089615.1| uncharacterized protein LOC734673 [Xenopus laevis]
gi|68534615|gb|AAH99272.1| MGC116464 protein [Xenopus laevis]
Length = 391
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 116/244 (47%), Positives = 163/244 (66%), Gaps = 40/244 (16%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E + +A+IY+G LD +V+E ++WE +Q+GPV++V+MP+D+V+ HQGYGF+EF EED
Sbjct: 5 EQRNQEASIYIGNLDSQVNEEILWECMLQAGPVLSVNMPRDKVSGFHQGYGFVEFKTEED 64
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
ADYA+K+MNMIKLY KPIR NKA++ +K DVGAN+F+GNL PEVDEK+L+DTFS FG +
Sbjct: 65 ADYALKVMNMIKLYNKPIRCNKATTDKKIHDVGANLFVGNLAPEVDEKMLFDTFSQFGNL 124
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFIN 208
+ TPK IM+DP++G SKGFAF++
Sbjct: 125 ISTPK--------------------------------------IMKDPESGGSKGFAFVS 146
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPH 268
+ SF+ +D +I +M+GQ+ N+ I V YA+KKDS G+R+GS AER AA L+ +P+
Sbjct: 147 FDSFDGADHAIQSMNGQFFYNKQIVVQYAYKKDSNGERYGSEAERKRAAN--LNPKLKPN 204
Query: 269 QLFA 272
FA
Sbjct: 205 TTFA 208
>gi|255931581|ref|XP_002557347.1| Pc12g04780 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581966|emb|CAP80105.1| Pc12g04780 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 366
Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 120/239 (50%), Positives = 159/239 (66%), Gaps = 40/239 (16%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++VS++L+WEL +Q G +VNVH+PKDRVTQ HQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVSDSLVWELMLQVGRIVNVHLPKDRVTQLHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A KIMN I+L+GKPIRVNKAS+ QK +++GA +F+GNLDP V E++L+DTFS FG ++
Sbjct: 70 ASKIMNGIRLHGKPIRVNKASADKQKTVEIGAELFVGNLDPMVAEQVLFDTFSRFGNLVN 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK I RD D SKG+ F+++A
Sbjct: 130 PPK--------------------------------------IARD-DNNLSKGYGFVSFA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQ 269
FE+SDA+I M+GQYL N+ +SV YA+KKD KG+RHG AER+LAAQ A P Q
Sbjct: 151 DFESSDAAIANMNGQYLMNKQVSVQYAYKKDGKGERHGDEAERMLAAQARKHNAQPPTQ 209
>gi|429859260|gb|ELA34048.1| splicing factor 3b subunit 4 [Colletotrichum gloeosporioides Nara
gc5]
Length = 363
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 149/228 (65%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D DATIY+G +D++ S +++E+ +Q GP+ N+HMP+DRVTQ HQG+GF+EF DA+Y
Sbjct: 10 DKDATIYIGNIDERASPAMVYEIMLQMGPIHNIHMPRDRVTQNHQGFGFVEFRTPGDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +MN IKLYGK +RVNKAS+ QK +VGA +F+GNLDP VDEK+LYDTFS FG ++
Sbjct: 70 AANVMNGIKLYGKSLRVNKASADKQKQAEVGAELFVGNLDPMVDEKILYDTFSRFGPLVS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK+ D+GNSKGF FI+YA
Sbjct: 130 LPKVARE---------------------------------------DSGNSKGFGFISYA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
FE+SDA+I +HGQY+ ++ +SV YAFKKD KG+RHG AAER LAAQ
Sbjct: 151 DFESSDAAIANLHGQYIASKEVSVQYAFKKDGKGERHGDAAERELAAQ 198
>gi|310792398|gb|EFQ27925.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 361
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 149/228 (65%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D DATIY+G +D++ S +++E+ +Q GP+ N+HMP+DRVTQ HQG+GF+EF DA+Y
Sbjct: 10 DKDATIYIGNIDERASPAMVYEVMLQMGPIHNIHMPRDRVTQNHQGFGFVEFRTPSDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +MN IKLYGK +RVNKAS+ QK +VGA +F+GNLDP VDEK+LYDTFS FG ++
Sbjct: 70 AANVMNGIKLYGKSLRVNKASADKQKQAEVGAELFVGNLDPMVDEKILYDTFSRFGPLIT 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK+ D+GNSKGF FI+YA
Sbjct: 130 LPKVARE---------------------------------------DSGNSKGFGFISYA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
FE+SDA+I +HGQY+ ++ +SV YAFKKD KG+RHG AAER LAAQ
Sbjct: 151 DFESSDAAIANLHGQYILSKEVSVQYAFKKDGKGERHGDAAERELAAQ 198
>gi|302421316|ref|XP_003008488.1| splicing factor 3B subunit 4 [Verticillium albo-atrum VaMs.102]
gi|261351634|gb|EEY14062.1| splicing factor 3B subunit 4 [Verticillium albo-atrum VaMs.102]
Length = 295
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 111/230 (48%), Positives = 150/230 (65%), Gaps = 40/230 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D DAT+Y+G +D++ + T+++E+ +Q GP+ N+HMP+DRVTQTHQG+GF+EF DA+Y
Sbjct: 63 DKDATVYIGNIDERATSTMVYEIMLQMGPIHNIHMPRDRVTQTHQGFGFVEFRTPSDAEY 122
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +MN +KLYGK +RVNKAS+ QK +VGA +F+GNLDP VDEK+LYDTFS FG +L
Sbjct: 123 AANVMNGVKLYGKSLRVNKASADKQKQAEVGAELFVGNLDPMVDEKILYDTFSRFGPLLT 182
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK+ D+GNSKGF FI++A
Sbjct: 183 LPKVAR---------------------------------------EDSGNSKGFGFISFA 203
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNP 260
FE+SDA+++ +HGQYL ++ +SV YAFKKD KG+RHG AAER A P
Sbjct: 204 DFESSDAAVENLHGQYLLSKEVSVQYAFKKDGKGERHGDAAERNAALHVP 253
>gi|380481860|emb|CCF41594.1| splicing factor 3B subunit 4 [Colletotrichum higginsianum]
Length = 257
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 149/228 (65%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D DATIY+G +D++ S +++E+ +Q GP+ N+HMP+DRVTQ HQG+GF+EF DA+Y
Sbjct: 10 DKDATIYIGNIDERASPAMVYEIMLQMGPIHNIHMPRDRVTQNHQGFGFVEFRTPGDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +MN IKLYGK +RVNKAS+ QK +VGA +F+GNLDP VDEK+LYDTFS FG ++
Sbjct: 70 AANVMNGIKLYGKSLRVNKASADKQKQAEVGAELFVGNLDPMVDEKILYDTFSRFGPLVN 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK+ D+GNSKGF FI+YA
Sbjct: 130 LPKVAR---------------------------------------EDSGNSKGFGFISYA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
FE+SDA+I +HGQY+ ++ +SV YAFKKD KG+RHG AAER LAAQ
Sbjct: 151 DFESSDAAISNLHGQYILSKEVSVQYAFKKDGKGERHGDAAERELAAQ 198
>gi|449301395|gb|EMC97406.1| hypothetical protein BAUCODRAFT_33122 [Baudoinia compniacensis UAMH
10762]
Length = 389
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 120/240 (50%), Positives = 154/240 (64%), Gaps = 52/240 (21%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D D+T+YVG LD++ +++L+WEL +Q+GPV+NVH+PKDRVTQTHQGYGF+EF EEDADY
Sbjct: 10 DKDSTLYVGNLDERCTDSLVWELMLQAGPVINVHLPKDRVTQTHQGYGFVEFGSEEDADY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNL-------------DVGANIFIGNLDPEVDEKLL 138
A KIMN I+L+GKPIRVNKAS+ ++ VGA +F+GNLD VDEK+L
Sbjct: 70 AAKIMNQIRLWGKPIRVNKASADRRGAPGTVEGGGLGGGQGVGAELFVGNLDSMVDEKIL 129
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
++TFS FG ++ PK + RD D
Sbjct: 130 FETFSRFGPLIAPPK--------------------------------------VARD-DA 150
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
SKG+ FI+YASFEASD +I MHGQYL N+ ++V YA+KKD KG+RHG AER LAAQ
Sbjct: 151 NLSKGYGFISYASFEASDDAIANMHGQYLMNKEVTVQYAYKKDGKGERHGDPAERALAAQ 210
>gi|348684961|gb|EGZ24776.1| hypothetical protein PHYSODRAFT_484926 [Phytophthora sojae]
Length = 209
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 108/199 (54%), Positives = 138/199 (69%), Gaps = 38/199 (19%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E + DAT+YVG LDD+V+E L+WEL +Q+G V NVHMP+D+VT +HQ YGF+EF EE
Sbjct: 6 EQRNQDATVYVGNLDDRVTEELLWELMLQAGSVCNVHMPRDKVTGSHQNYGFVEFRTEEC 65
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
A+YA+K++NM++L+GK IRV KASS +KNLDVGAN+F+GNLDPEVDEKLLYDTFSAFG I
Sbjct: 66 AEYAVKVLNMVQLFGKAIRVKKASSDRKNLDVGANLFLGNLDPEVDEKLLYDTFSAFGGI 125
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFIN 208
++TPK IMRDPDT S+GF F++
Sbjct: 126 IETPK--------------------------------------IMRDPDTKASRGFGFVS 147
Query: 209 YASFEASDASIDAMHGQYL 227
+ SFEA+D +I+ MHGQYL
Sbjct: 148 FDSFEAADLAIECMHGQYL 166
>gi|156048690|ref|XP_001590312.1| hypothetical protein SS1G_09077 [Sclerotinia sclerotiorum 1980]
gi|154693473|gb|EDN93211.1| hypothetical protein SS1G_09077 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 380
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/218 (51%), Positives = 150/218 (68%), Gaps = 40/218 (18%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G +D++V+++L+WEL +Q+G +VNVH+PKDRVTQ HQGYGF+EF+ EEDA+Y
Sbjct: 9 DKEATVYIGNIDERVTDSLVWELMLQAGRIVNVHLPKDRVTQNHQGYGFVEFISEEDAEY 68
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++L+GKPIRVNKAS+ QK ++VGA +FIGNLDP VDEK LYDTFS FG ++
Sbjct: 69 AARIMNQVRLFGKPIRVNKASADKQKTVEVGAELFIGNLDPMVDEKTLYDTFSRFGSLIS 128
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK I RD ++ SKG+ F++YA
Sbjct: 129 PPK--------------------------------------IARD-ESSLSKGYGFVSYA 149
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
+FEASD +I M+GQYL N+ ISV YA+KKD KG+RHG
Sbjct: 150 NFEASDDAIANMNGQYLMNKDISVQYAYKKDGKGERHG 187
>gi|154294661|ref|XP_001547770.1| hypothetical protein BC1G_13457 [Botryotinia fuckeliana B05.10]
Length = 381
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/218 (51%), Positives = 150/218 (68%), Gaps = 40/218 (18%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G +D++V+++L+WEL +Q+G +VNVH+PKDRVTQ HQGYGF+EF+ EEDA+Y
Sbjct: 11 DKEATVYIGNIDERVTDSLVWELMLQAGRIVNVHLPKDRVTQNHQGYGFVEFISEEDAEY 70
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++L+GKPIRVNKAS+ QK ++VGA +FIGNLDP VDEK LYDTFS FG ++
Sbjct: 71 AARIMNQVRLFGKPIRVNKASADKQKTVEVGAELFIGNLDPMVDEKTLYDTFSRFGSLIS 130
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK I RD ++ SKG+ F++YA
Sbjct: 131 PPK--------------------------------------IARD-ESSLSKGYGFVSYA 151
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
+FEASD +I M+GQYL N+ ISV YA+KKD KG+RHG
Sbjct: 152 NFEASDDAIANMNGQYLMNKDISVQYAYKKDGKGERHG 189
>gi|358389660|gb|EHK27252.1| hypothetical protein TRIVIDRAFT_229059 [Trichoderma virens Gv29-8]
Length = 385
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 148/228 (64%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G +D++ + T+++E+ +Q GP+ N+HMP+DRVTQTHQG+GF+EF DA+Y
Sbjct: 10 DKEATVYIGNIDERATSTMVYEIMLQMGPIHNIHMPRDRVTQTHQGFGFVEFRTPADAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +MN IKLYGK +RVNKAS+ QK +VGA +FIGNLDP VDEK+LYDTFS FG +L
Sbjct: 70 AANVMNGIKLYGKSLRVNKASADKQKAAEVGAELFIGNLDPMVDEKILYDTFSRFGPLLS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK+ D+G SKGF F++Y
Sbjct: 130 IPKVARE---------------------------------------DSGASKGFGFVSYG 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
FE+SDA+I +HGQY+ ++ +SV YAFKKD KG+RHG AER LAAQ
Sbjct: 151 DFESSDAAISNLHGQYILSKEVSVQYAFKKDGKGERHGDQAERALAAQ 198
>gi|392577429|gb|EIW70558.1| hypothetical protein TREMEDRAFT_71330 [Tremella mesenterica DSM
1558]
Length = 331
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/225 (50%), Positives = 147/225 (65%), Gaps = 42/225 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD+K ++ L+WEL + + NV +PKDR++ HQG+GF EF+ EED++YA+
Sbjct: 14 EATVYLGNLDEKCTDALIWELMLST----NVFLPKDRISMNHQGFGFCEFLTEEDSEYAV 69
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMN IKLYGKPIRVNKAS +K LD+GAN+FIGNLD VDE LYDTF+ FG I + PK
Sbjct: 70 KIMNQIKLYGKPIRVNKASYDKKQLDIGANLFIGNLDLNVDENALYDTFATFGSIAEHPK 129
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RDP TG SKG+ F++Y F+
Sbjct: 130 --------------------------------------ISRDPTTGQSKGYGFVSYHDFD 151
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
A+D +I+ M+GQ+ + I+V YAFKKD KG+RHGSAAERLLAAQ
Sbjct: 152 AADMAIENMNGQFFGGQQITVQYAFKKDGKGERHGSAAERLLAAQ 196
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVV-NVHMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +++G LD V E +++ F G + + + +D T +GYGF+ + + AD
Sbjct: 95 DIGANLFIGNLDLNVDENALYDTFATFGSIAEHPKISRDPTTGQSKGYGFVSYHDFDAAD 154
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN G+ I V A
Sbjct: 155 MAIENMNGQFFGGQQITVQYA 175
>gi|301097256|ref|XP_002897723.1| splicing factor 3B subunit 4 [Phytophthora infestans T30-4]
gi|262106744|gb|EEY64796.1| splicing factor 3B subunit 4 [Phytophthora infestans T30-4]
Length = 188
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/199 (55%), Positives = 137/199 (68%), Gaps = 38/199 (19%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E + DAT+YVG LDD+V+E L+WEL +QSG V NVHMP+D+VT HQ YGF+EF E+
Sbjct: 6 EQRNQDATVYVGNLDDRVTEELLWELMLQSGSVCNVHMPRDKVTGAHQNYGFVEFRTEDC 65
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
A+YA+K++NMI+LYG+ IRV KAS+ +KNLDVGAN+FIGNLDPEVDEKLLYDTFSAFG I
Sbjct: 66 AEYAVKVLNMIQLYGRVIRVKKASNDRKNLDVGANLFIGNLDPEVDEKLLYDTFSAFGGI 125
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFIN 208
++TPK IMRDPDT SKGF F++
Sbjct: 126 VETPK--------------------------------------IMRDPDTKASKGFGFVS 147
Query: 209 YASFEASDASIDAMHGQYL 227
+ SFEA+D +I+ MHGQYL
Sbjct: 148 FDSFEAADLAIECMHGQYL 166
>gi|347841404|emb|CCD55976.1| hypothetical protein [Botryotinia fuckeliana]
Length = 380
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/218 (51%), Positives = 150/218 (68%), Gaps = 40/218 (18%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G +D++V+++L+WEL +Q+G +VNVH+PKDRVTQ HQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNIDERVTDSLVWELMLQAGRIVNVHLPKDRVTQNHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++L+GKPIRVNKAS+ QK ++VGA +FIGNLDP VDEK LYDTFS FG ++
Sbjct: 70 AARIMNQVRLFGKPIRVNKASADKQKTVEVGAELFIGNLDPMVDEKTLYDTFSRFGSLIS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK I RD ++ SKG+ F++YA
Sbjct: 130 PPK--------------------------------------IARD-ESSLSKGYGFVSYA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
+FEASD +I M+GQYL N+ ISV YA+KKD KG+RHG
Sbjct: 151 NFEASDDAIANMNGQYLMNKDISVQYAYKKDGKGERHG 188
>gi|358392239|gb|EHK41643.1| hypothetical protein TRIATDRAFT_84569 [Trichoderma atroviride IMI
206040]
Length = 387
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 110/228 (48%), Positives = 148/228 (64%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G +D++ + +++E+ +Q GP+ N+HMP+DRVTQTHQG+GF+EF DA+Y
Sbjct: 10 DKEATVYIGNIDERATSAMVYEIMLQMGPIHNIHMPRDRVTQTHQGFGFVEFRTPADAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +MN IKLYGK +RVNKAS+ Q++ +VGA +FIGNLDP VDEK+LYDTFS FG +L
Sbjct: 70 AANVMNGIKLYGKSLRVNKASADKQRSAEVGAELFIGNLDPMVDEKVLYDTFSRFGPLLS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK+ D+G SKGF F++Y
Sbjct: 130 IPKVARE---------------------------------------DSGASKGFGFVSYG 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
FE+SDA+I +HGQY+ ++ +SV YAFKKD KGDRHG AER LAAQ
Sbjct: 151 DFESSDAAIANLHGQYILSKEVSVQYAFKKDGKGDRHGDQAERSLAAQ 198
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 43/83 (51%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
S + A +++G LD V E ++++ F + GP++++ + +G+GF+ + E
Sbjct: 95 RSAEVGAELFIGNLDPMVDEKVLYDTFSRFGPLLSIPKVAREDSGASKGFGFVSYGDFES 154
Query: 89 ADYAIKIMNMIKLYGKPIRVNKA 111
+D AI ++ + K + V A
Sbjct: 155 SDAAIANLHGQYILSKEVSVQYA 177
>gi|453083918|gb|EMF11963.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 387
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 117/238 (49%), Positives = 156/238 (65%), Gaps = 50/238 (21%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D D+T+Y+G LD++ ++ L+WEL +Q+GPV+NVH+PKDRVTQ+HQGYGF+EF E+DADY
Sbjct: 10 DKDSTLYIGNLDERCTDPLIWELMLQAGPVINVHLPKDRVTQSHQGYGFVEFGSEDDADY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNLD-----------VGANIFIGNLDPEVDEKLLYD 140
A KIMN I+LYGKPIRVNKAS+ ++ + VGA +F+GNLD VDEK+LY+
Sbjct: 70 ACKIMNQIRLYGKPIRVNKASADRRGPNGEGGGLGGGAGVGAELFVGNLDNMVDEKVLYE 129
Query: 141 TFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200
TFS FG ++ PK+ + + NL
Sbjct: 130 TFSRFGPLVAAPKV----------------ARDESNL----------------------- 150
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
SKG+ F++YA+FEASD +I+ MHGQYL N+ I+V YA+KKD KG+RHG AER LAAQ
Sbjct: 151 SKGYGFVSYAAFEASDQAIEHMHGQYLMNKEITVQYAYKKDGKGERHGDDAERALAAQ 208
>gi|398394106|ref|XP_003850512.1| hypothetical protein MYCGRDRAFT_46623 [Zymoseptoria tritici IPO323]
gi|339470390|gb|EGP85488.1| hypothetical protein MYCGRDRAFT_46623 [Zymoseptoria tritici IPO323]
Length = 343
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 115/234 (49%), Positives = 152/234 (64%), Gaps = 46/234 (19%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D ++T+YVG LD++ ++ L+WEL +Q+GPV+NVH+P+DRVTQ HQGYGF+EF E+DADY
Sbjct: 10 DKESTLYVGNLDERCTDALVWELMLQAGPVINVHLPRDRVTQNHQGYGFVEFGSEDDADY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQK-------NLDVGANIFIGNLDPEVDEKLLYDTFSA 144
A KIMN I+++GKPIRVNKAS+ ++ VGA +F+GNLD VDEK+LY+TF
Sbjct: 70 ACKIMNQIRVHGKPIRVNKASADKRAGGENGGLGGVGAELFVGNLDSLVDEKVLYETFIR 129
Query: 145 FGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGF 204
FG ++ PK I RD D SKG+
Sbjct: 130 FGQLVAAPK--------------------------------------IARD-DANLSKGY 150
Query: 205 AFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
F++YA FEASDA+I+ MHGQYL N+ ++V YA+KKD KG+RHG AER LAAQ
Sbjct: 151 GFVSYAGFEASDAAIEHMHGQYLMNKEVTVQYAYKKDGKGERHGDEAERALAAQ 204
>gi|403221974|dbj|BAM40106.1| splicing factor 3b subunit 4 [Theileria orientalis strain Shintoku]
Length = 326
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 106/227 (46%), Positives = 157/227 (69%), Gaps = 40/227 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD + E L+WE F+Q+G V ++++P+D+VT HQG+GF+E+ E DADYA+
Sbjct: 17 EATLYIGNLDIQADEELLWEFFMQAGRVRSINIPRDKVTGQHQGFGFVEYETETDADYAL 76
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+I+N IKLY KP+R+NKAS ++N ++GAN+FIGN+D EVDEKLL+DTFSAFG ++ T
Sbjct: 77 RILNFIKLYHKPLRLNKASKDKENTEIGANLFIGNIDDEVDEKLLHDTFSAFGTVVFT-- 134
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+I+RD + + + +AF+++ +FE
Sbjct: 135 -------------------------------------KIVRD-EANSGRSYAFVSFDNFE 156
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNP 260
+SDA++ +M+GQ+LCN+PI VSYA+KKD+KG+RHGSAAERL+AA P
Sbjct: 157 SSDAALASMNGQFLCNKPIHVSYAYKKDTKGERHGSAAERLIAANRP 203
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 19 LSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGY 78
L K E+ + A +++G +DD+V E L+ + F G VV + +D + + Y
Sbjct: 89 LRLNKASKDKENTEIGANLFIGNIDDEVDEKLLHDTFSAFGTVVFTKIVRDE-ANSGRSY 147
Query: 79 GFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111
F+ F E +D A+ MN L KPI V+ A
Sbjct: 148 AFVSFDNFESSDAALASMNGQFLCNKPIHVSYA 180
>gi|340522320|gb|EGR52553.1| predicted protein [Trichoderma reesei QM6a]
Length = 386
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/228 (48%), Positives = 147/228 (64%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G +D++ + +++E+ +Q GP+ N+HMP+DRVTQTHQG+GF+EF DA+Y
Sbjct: 5 DKEATVYIGNIDERATPAMVYEIMLQMGPIHNIHMPRDRVTQTHQGFGFVEFRTPADAEY 64
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +MN IKLYGK +RVNKAS+ QK +VGA +FIGNLDP VDEK+LYDTFS FG +L
Sbjct: 65 AANVMNGIKLYGKSLRVNKASADKQKAAEVGAELFIGNLDPMVDEKILYDTFSRFGPLLS 124
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK+ D+G SKGF F++Y
Sbjct: 125 IPKVARE---------------------------------------DSGASKGFGFVSYG 145
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
FE+SDA+I +HGQY+ ++ +SV YAFKKD KG+RHG AER LAAQ
Sbjct: 146 DFESSDAAIANLHGQYILSKEVSVQYAFKKDGKGERHGDPAERALAAQ 193
>gi|320587367|gb|EFW99847.1| splicing factor 3b subunit 4 [Grosmannia clavigera kw1407]
Length = 414
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 160/268 (59%), Gaps = 45/268 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+YVG LD++ SE LMWEL Q GPVVNVHMP DRV++ HQG+GF+EF E A+YA
Sbjct: 11 EATVYVGNLDERFSEPLMWELMTQMGPVVNVHMPMDRVSRLHQGFGFVEFDTPESAEYAS 70
Query: 94 KIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+ +N I+LYGKP+RVNKAS+ Q+ ++GA +F+ NLDP+VDEK+LYDTF+ FG ++ P
Sbjct: 71 RTLNGIRLYGKPVRVNKASADRQRAAEIGAELFVNNLDPQVDEKILYDTFAQFGRLVAPP 130
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ Q N+ SKG+ F+++ SF
Sbjct: 131 NVVR----------------DQNNI-----------------------SKGYGFVSFDSF 151
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQA-----DRP 267
+ASD + DAM GQYL ++ ISV YA+KKD KG+RHG AER LAA+ P
Sbjct: 152 DASDTARDAMQGQYLLSKQISVEYAYKKDGKGERHGDEAERKLAAEGKKHNVVPDVQPMP 211
Query: 268 HQLFADAPPPAPLPPPPPPINIMGLPPP 295
+ P P P+ PP P + + PPP
Sbjct: 212 SAFYMTHPNPNPVLPPGPAVGAIAAPPP 239
>gi|342879058|gb|EGU80333.1| hypothetical protein FOXB_09130 [Fusarium oxysporum Fo5176]
Length = 375
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/228 (47%), Positives = 148/228 (64%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G +D++ + +++E+ +Q GP+ N+HMP+DRVTQTHQG+GF+EF DA+Y
Sbjct: 28 DKEATVYIGNIDERATSAMVYEIMLQMGPIHNIHMPRDRVTQTHQGFGFVEFRTPTDAEY 87
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +MN IKLYGK +RVNKAS+ Q+ +VGA +FIGNLDP VDEK+LYDTFS FG +L
Sbjct: 88 AANVMNGIKLYGKSLRVNKASADKQRAAEVGAELFIGNLDPMVDEKILYDTFSRFGPLLS 147
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK+ ++G SKGF F+++A
Sbjct: 148 LPKVARE---------------------------------------ESGASKGFGFVSFA 168
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
FE+SDA+I +HGQY+ ++ +SV YAFKKD KG+RHG AER LAAQ
Sbjct: 169 DFESSDAAIANLHGQYILSKEVSVQYAFKKDGKGERHGDEAERELAAQ 216
>gi|46125929|ref|XP_387518.1| hypothetical protein FG07342.1 [Gibberella zeae PH-1]
Length = 357
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 107/228 (46%), Positives = 148/228 (64%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G +D++ + +++E+ +Q GP+ N+HMP+DRVTQTHQG+GF+EF DA+Y
Sbjct: 10 DKEATVYIGNIDERATSAMVYEIMLQMGPIHNIHMPRDRVTQTHQGFGFVEFRTPTDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +MN IKLYGK +RVNKAS+ Q+ +VGA +FIGNLD VDEK+LYDTFS FG +L
Sbjct: 70 AANVMNGIKLYGKSLRVNKASADKQRAAEVGAELFIGNLDSMVDEKILYDTFSRFGPLLS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK+ ++G SKGF F+++A
Sbjct: 130 LPKVARE---------------------------------------ESGASKGFGFVSFA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
FE+SDA+ID +HGQY+ ++ +SV YAFKKD KG+RHG AER LAA+
Sbjct: 151 DFESSDAAIDTLHGQYILSKEVSVQYAFKKDGKGERHGDQAERSLAAE 198
>gi|408396492|gb|EKJ75649.1| hypothetical protein FPSE_04150 [Fusarium pseudograminearum CS3096]
Length = 357
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 107/228 (46%), Positives = 148/228 (64%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G +D++ + +++E+ +Q GP+ N+HMP+DRVTQTHQG+GF+EF DA+Y
Sbjct: 10 DKEATVYIGNIDERATSAMVYEIMLQMGPIHNIHMPRDRVTQTHQGFGFVEFRTPTDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +MN IKLYGK +RVNKAS+ Q+ +VGA +FIGNLD VDEK+LYDTFS FG +L
Sbjct: 70 AANVMNGIKLYGKSLRVNKASADKQRAAEVGAELFIGNLDSMVDEKILYDTFSRFGPLLS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK+ ++G SKGF F+++A
Sbjct: 130 LPKVARE---------------------------------------ESGASKGFGFVSFA 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
FE+SDA+ID +HGQY+ ++ +SV YAFKKD KG+RHG AER LAA+
Sbjct: 151 DFESSDAAIDTLHGQYILSKEVSVQYAFKKDGKGERHGDQAERSLAAE 198
>gi|164659882|ref|XP_001731065.1| hypothetical protein MGL_2064 [Malassezia globosa CBS 7966]
gi|159104963|gb|EDP43851.1| hypothetical protein MGL_2064 [Malassezia globosa CBS 7966]
Length = 227
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 104/226 (46%), Positives = 151/226 (66%), Gaps = 39/226 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT YVG LD++V++ ++WEL +Q GPV ++++PKDR++Q HQGY F E+ E DA+YA
Sbjct: 10 EATCYVGNLDERVTDEIIWELMLQVGPVAHIYLPKDRISQMHQGYAFAEYCTESDAEYAC 69
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+IMN IKLYGKPIRVN +S+ ++ +D+GAN+F+GNLD VDE+LLYDTF+ FG IL P+
Sbjct: 70 RIMNGIKLYGKPIRVNMSSNEKQVVDIGANLFVGNLDSGVDERLLYDTFATFGGILGAPR 129
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I RDP T SK + F+++ SFE
Sbjct: 130 --------------------------------------IARDPTTNESKNYGFVSFDSFE 151
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK-GDRHGSAAERLLAAQ 258
++D +I++++ Q+L NRP++V YA +KD+K G+RHG+ AERL+AAQ
Sbjct: 152 SADGAIESLNNQFLLNRPMTVMYALRKDAKNGERHGTQAERLVAAQ 197
>gi|452982549|gb|EME82308.1| hypothetical protein MYCFIDRAFT_211591 [Pseudocercospora fijiensis
CIRAD86]
Length = 391
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 149/227 (65%), Gaps = 49/227 (21%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D D+T+Y+G LD++ S+ L+WEL +Q+GPV+NVH+PKDRVTQ+HQGYGF+EF E+DADY
Sbjct: 10 DKDSTLYIGNLDERCSDALVWELMLQAGPVINVHLPKDRVTQSHQGYGFVEFGSEDDADY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQK----------NLDVGANIFIGNLDPEVDEKLLYDT 141
A+KIMN I+L+GKPIRVNKAS+ ++ VGA +F+GNLD VDEK+LYDT
Sbjct: 70 AVKIMNQIRLWGKPIRVNKASADKRGGENGAGLGGGQGVGAELFVGNLDSMVDEKVLYDT 129
Query: 142 FSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201
FS FG +L TPK + RD D S
Sbjct: 130 FSRFGPLLATPK--------------------------------------VARD-DANLS 150
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
KG+ FI+Y++FE+SD +I+ MHGQ+L N+ I+V YA+KKD KG+RHG
Sbjct: 151 KGYGFISYSTFESSDEAIEHMHGQFLMNKEITVQYAYKKDGKGERHG 197
>gi|116198017|ref|XP_001224820.1| hypothetical protein CHGG_07164 [Chaetomium globosum CBS 148.51]
gi|88178443|gb|EAQ85911.1| hypothetical protein CHGG_07164 [Chaetomium globosum CBS 148.51]
Length = 529
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 111/226 (49%), Positives = 148/226 (65%), Gaps = 40/226 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVG +D++ ++ L+ EL Q GPV VHMP+DRV+QTHQGYGF+EF A+YA
Sbjct: 138 DATVYVGNIDERFTQELLSELMTQVGPVRQVHMPQDRVSQTHQGYGFVEFDTPASAEYAS 197
Query: 94 KIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
K++N I+++GKPIRVNKAS+ QK +D+GA +FI NLDP+VDEK+LYDTFS FG IL+ P
Sbjct: 198 KVLNGIRIWGKPIRVNKASADKQKTVDIGAELFINNLDPQVDEKILYDTFSQFGQILRQP 257
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
I+RD D SKG+ F+++ SF
Sbjct: 258 --------------------------------------NIVRD-DNNISKGYGFVSFDSF 278
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
EASDA++ M+GQYL ++ I+V YA+KKD KG+RHG AER LAA+
Sbjct: 279 EASDAAVGTMNGQYLLSKSITVEYAYKKDGKGERHGDEAERKLAAE 324
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D A +++ LD +V E ++++ F Q G ++ +GYGF+ F E +D
Sbjct: 224 DIGAELFINNLDPQVDEKILYDTFSQFGQILRQPNIVRDDNNISKGYGFVSFDSFEASDA 283
Query: 92 AIKIMNMIKLYGKPIRVNKA 111
A+ MN L K I V A
Sbjct: 284 AVGTMNGQYLLSKSITVEYA 303
>gi|367025735|ref|XP_003662152.1| hypothetical protein MYCTH_2302391 [Myceliophthora thermophila ATCC
42464]
gi|347009420|gb|AEO56907.1| hypothetical protein MYCTH_2302391 [Myceliophthora thermophila ATCC
42464]
Length = 404
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/226 (49%), Positives = 147/226 (65%), Gaps = 40/226 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVG +D++ + L+ EL Q GPV VHMP+DRV+QTHQGYGF+EF A+YA
Sbjct: 10 DATVYVGNIDERFTHELLSELMTQVGPVRQVHMPQDRVSQTHQGYGFVEFDTPASAEYAS 69
Query: 94 KIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
K++N I+++GKPIRVNKAS+ QK +D+GA +FI NLDP+VDEK+LYDTFS FG IL+
Sbjct: 70 KVLNGIRIWGKPIRVNKASADKQKTVDIGAELFINNLDPQVDEKILYDTFSQFGQILR-- 127
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
P ++RD D SKG+ F+++ SF
Sbjct: 128 ------------------------------------QPNVVRD-DNNISKGYGFVSFDSF 150
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
EASDA+I M+GQYL ++ I+V YA+KKD KG+RHG AER LAA+
Sbjct: 151 EASDAAIATMNGQYLLSKAITVEYAYKKDGKGERHGDEAERKLAAE 196
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVV---NVHMPKDRVTQTHQGYGFIEFMGEED 88
D A +++ LD +V E ++++ F Q G ++ NV + +++ GYGF+ F E
Sbjct: 96 DIGAELFINNLDPQVDEKILYDTFSQFGQILRQPNVVRDDNNISK---GYGFVSFDSFEA 152
Query: 89 ADYAIKIMNMIKLYGKPIRVNKA 111
+D AI MN L K I V A
Sbjct: 153 SDAAIATMNGQYLLSKAITVEYA 175
>gi|367038731|ref|XP_003649746.1| hypothetical protein THITE_2108627 [Thielavia terrestris NRRL 8126]
gi|346997007|gb|AEO63410.1| hypothetical protein THITE_2108627 [Thielavia terrestris NRRL 8126]
Length = 399
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 148/226 (65%), Gaps = 40/226 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVG +D++ ++ L+ EL Q GPV VHMP+DRV+QTHQGYGF+EF A+YA
Sbjct: 10 DATVYVGNIDERFTQELLSELMTQVGPVRQVHMPQDRVSQTHQGYGFVEFDTPASAEYAA 69
Query: 94 KIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
K++N I+++GKPIRVNKAS+ QK +D+GA +FI NLDP+VDEK+LYDTFS FG IL+
Sbjct: 70 KVLNGIRIWGKPIRVNKASADKQKAVDIGAELFINNLDPQVDEKILYDTFSQFGQILR-- 127
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
P I+RD + SKG+ F+++ SF
Sbjct: 128 ------------------------------------QPNIVRD-ENHISKGYGFVSFDSF 150
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
EASDA++ M+GQYL ++ I+V YA+KKD KG+RHG AER LAA+
Sbjct: 151 EASDAALSTMNGQYLLSKAITVEYAYKKDGKGERHGDEAERKLAAE 196
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTH--QGYGFIEFMGEEDA 89
D A +++ LD +V E ++++ F Q G ++ P + H +GYGF+ F E +
Sbjct: 96 DIGAELFINNLDPQVDEKILYDTFSQFGQILR--QPNIVRDENHISKGYGFVSFDSFEAS 153
Query: 90 DYAIKIMNMIKLYGKPIRVNKA 111
D A+ MN L K I V A
Sbjct: 154 DAALSTMNGQYLLSKAITVEYA 175
>gi|336472211|gb|EGO60371.1| hypothetical protein NEUTE1DRAFT_119564 [Neurospora tetrasperma
FGSC 2508]
gi|350294569|gb|EGZ75654.1| RNA-binding domain-containing protein [Neurospora tetrasperma FGSC
2509]
Length = 390
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 117/250 (46%), Positives = 155/250 (62%), Gaps = 49/250 (19%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVG +D++ ++ L+ EL Q GPV VHMP+DRV+QTHQGYGF+EF A+YA
Sbjct: 10 DATVYVGNIDERFTQELLSELMTQVGPVRQVHMPQDRVSQTHQGYGFVEFDTPASAEYAA 69
Query: 94 KIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
K++N I+++GKPIRVNKAS+ QK +D+GA +FI NLDP+VDEK+LYDTFS FG IL+
Sbjct: 70 KVLNGIRIWGKPIRVNKASADKQKTVDIGAELFINNLDPQVDEKILYDTFSQFGQILR-- 127
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
P I+RD D SKG+ F+++ SF
Sbjct: 128 ------------------------------------QPNIVRD-DNNISKGYGFVSFGSF 150
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFA 272
EASDA+ M+GQYL ++ I+V YA+KKD KG+RHG AER LAA+ + H +
Sbjct: 151 EASDAARATMNGQYLLSKQITVEYAYKKDGKGERHGDEAERKLAAEG------KKHNI-- 202
Query: 273 DAPPPAPLPP 282
P PLPP
Sbjct: 203 -VPEQQPLPP 211
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D A +++ LD +V E ++++ F Q G ++ +GYGF+ F E +D
Sbjct: 96 DIGAELFINNLDPQVDEKILYDTFSQFGQILRQPNIVRDDNNISKGYGFVSFGSFEASDA 155
Query: 92 AIKIMNMIKLYGKPIRVNKA 111
A MN L K I V A
Sbjct: 156 ARATMNGQYLLSKQITVEYA 175
>gi|336257859|ref|XP_003343751.1| NAM8/MRE2 protein [Sordaria macrospora k-hell]
gi|380091622|emb|CCC10754.1| putative NAM8/MRE2 protein [Sordaria macrospora k-hell]
Length = 390
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 117/250 (46%), Positives = 155/250 (62%), Gaps = 49/250 (19%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVG +D++ ++ L+ EL Q GPV VHMP+DRV+QTHQGYGF+EF A+YA
Sbjct: 10 DATVYVGNIDERFTQELLSELMTQVGPVRQVHMPQDRVSQTHQGYGFVEFDTPASAEYAA 69
Query: 94 KIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
K++N I+++GKPIRVNKAS+ QK +D+GA +FI NLDP+VDEK+LYDTFS FG IL+
Sbjct: 70 KVLNGIRIWGKPIRVNKASADKQKTVDIGAELFINNLDPQVDEKILYDTFSQFGQILR-- 127
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
P I+RD D SKG+ F+++ SF
Sbjct: 128 ------------------------------------QPNIVRD-DNNISKGYGFVSFGSF 150
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFA 272
EASDA+ M+GQYL ++ I+V YA+KKD KG+RHG AER LAA+ + H +
Sbjct: 151 EASDAARATMNGQYLLSKQITVEYAYKKDGKGERHGDEAERKLAAEG------KKHNI-- 202
Query: 273 DAPPPAPLPP 282
P PLPP
Sbjct: 203 -VPEQQPLPP 211
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D A +++ LD +V E ++++ F Q G ++ +GYGF+ F E +D
Sbjct: 96 DIGAELFINNLDPQVDEKILYDTFSQFGQILRQPNIVRDDNNISKGYGFVSFGSFEASDA 155
Query: 92 AIKIMNMIKLYGKPIRVNKA 111
A MN L K I V A
Sbjct: 156 ARATMNGQYLLSKQITVEYA 175
>gi|85101406|ref|XP_961142.1| hypothetical protein NCU04182 [Neurospora crassa OR74A]
gi|11595719|emb|CAC18197.1| probable spliceosome-associated protein SAP-49 [Neurospora crassa]
gi|28922682|gb|EAA31906.1| hypothetical protein NCU04182 [Neurospora crassa OR74A]
Length = 390
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 117/250 (46%), Positives = 155/250 (62%), Gaps = 49/250 (19%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVG +D++ ++ L+ EL Q GPV VHMP+DRV+QTHQGYGF+EF A+YA
Sbjct: 10 DATVYVGNIDERFTQELLSELMTQVGPVRQVHMPQDRVSQTHQGYGFVEFDTPASAEYAA 69
Query: 94 KIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
K++N I+++GKPIRVNKAS+ QK +D+GA +FI NLDP+VDEK+LYDTFS FG IL+
Sbjct: 70 KVLNGIRVWGKPIRVNKASADKQKTVDIGAELFINNLDPQVDEKILYDTFSQFGQILR-- 127
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
P I+RD D SKG+ F+++ SF
Sbjct: 128 ------------------------------------QPNIVRD-DNNISKGYGFVSFGSF 150
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFA 272
EASDA+ M+GQYL ++ I+V YA+KKD KG+RHG AER LAA+ + H +
Sbjct: 151 EASDAARATMNGQYLLSKQITVEYAYKKDGKGERHGDEAERKLAAEG------KKHNI-- 202
Query: 273 DAPPPAPLPP 282
P PLPP
Sbjct: 203 -VPEQQPLPP 211
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D A +++ LD +V E ++++ F Q G ++ +GYGF+ F E +D
Sbjct: 96 DIGAELFINNLDPQVDEKILYDTFSQFGQILRQPNIVRDDNNISKGYGFVSFGSFEASDA 155
Query: 92 AIKIMNMIKLYGKPIRVNKA 111
A MN L K I V A
Sbjct: 156 ARATMNGQYLLSKQITVEYA 175
>gi|240277045|gb|EER40555.1| splicing factor 3b subunit 4 [Ajellomyces capsulatus H143]
Length = 247
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 159/263 (60%), Gaps = 61/263 (23%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++++++L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNLDERITDSLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ QK ++VGA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 AARIMNQVRLYGKPIRVNKASADKQKMVEVGAELFVGNLDPMVTEQVLYDTFSRFGSLIS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK I RD D SKG+ F++++
Sbjct: 130 APK--------------------------------------IARD-DANLSKGYGFVSFS 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQA------ 264
+FEASD +I M+GQYL N+ +SV YA+KKD L A+ P SQA
Sbjct: 151 NFEASDDAIANMNGQYLMNKEVSVQYAYKKDG------------LPARPPPSQAGYGGPP 198
Query: 265 ---DRPHQLFADAPPPAPLPPPP 284
P F PPPA P P
Sbjct: 199 PQGFVPPPRFGQQPPPASFGPTP 221
>gi|407922777|gb|EKG15869.1| hypothetical protein MPH_06834 [Macrophomina phaseolina MS6]
Length = 379
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 107/214 (50%), Positives = 142/214 (66%), Gaps = 40/214 (18%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+YVG LD++V++ L+WEL +Q G + NVH+PKDRVTQTHQGYGF+EF EE+ADY
Sbjct: 11 DKEATVYVGNLDERVTDRLVWELMLQVGRIQNVHLPKDRVTQTHQGYGFVEFQSEEEADY 70
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A KIMN I+LYGKPIRVNKAS+ QK ++VGA +F+GNLDP VDEK+L+D FS FG ++
Sbjct: 71 AAKIMNQIRLYGKPIRVNKASADKQKTVEVGAELFVGNLDPMVDEKVLFDCFSRFGSLVS 130
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK+ + + NL SKG+ F+++A
Sbjct: 131 APKV----------------ARDENNL-----------------------SKGYGFVSFA 151
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
+FE+SD +I M+GQYL N+ ISV YA+KKD K
Sbjct: 152 TFESSDDAIANMNGQYLMNKEISVQYAYKKDGKA 185
>gi|328869602|gb|EGG17979.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 670
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 118/257 (45%), Positives = 158/257 (61%), Gaps = 48/257 (18%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+ G ATI V +D +V+E L+WEL +Q PVV V MPKD++TQ H G ++EF E D
Sbjct: 393 DRGSDAATIQVRDIDPQVTEALLWELMIQVAPVVKVFMPKDKLTQQHSGRAYVEFQSEND 452
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKN-LDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
ADYA++I+N IKL+G+PI++ K + K+ +DVGAN+FIGNLD EVDEK+L+DTF FG
Sbjct: 453 ADYAMRILNYIKLFGRPIKLKKVRINNKDKVDVGANLFIGNLDAEVDEKILHDTFIQFGA 512
Query: 148 ILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFI 207
I+Q PK IMRD TG SKGF F+
Sbjct: 513 IIQPPK--------------------------------------IMRDTSTGVSKGFGFV 534
Query: 208 NYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRP 267
+Y +F +SDASI+AM+G++LCN+PISV+YA KKDS ++HGS AER++AA R
Sbjct: 535 SYDNFASSDASIEAMNGEFLCNKPISVTYARKKDST-EKHGSQAERMIAAGK-----QRG 588
Query: 268 HQLFADAPPPAPLPPPP 284
+FA +PPPP
Sbjct: 589 IPMFAQF---GGMPPPP 602
>gi|171693953|ref|XP_001911901.1| hypothetical protein [Podospora anserina S mat+]
gi|170946925|emb|CAP73729.1| unnamed protein product [Podospora anserina S mat+]
Length = 403
Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 146/226 (64%), Gaps = 40/226 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVG +D++ ++ L+ EL Q GPV VHMP DRVT+ HQGYGFIEF E A+YA
Sbjct: 21 DATVYVGNIDERFTQELLTELMTQVGPVRQVHMPLDRVTRNHQGYGFIEFDTPESAEYAA 80
Query: 94 KIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
K +N I+++GKP+RVNKAS+ QK +D+GA +FI NLDP+VDEK+LYDTFS FG IL+
Sbjct: 81 KCLNGIRVHGKPLRVNKASADKQKTVDIGAELFINNLDPQVDEKILYDTFSTFGQILR-- 138
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
P I+RD D SKG+ F+++ SF
Sbjct: 139 ------------------------------------QPNIVRD-DNNISKGYGFVSFDSF 161
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
EASDA++ M+GQYL ++ ISV YA+KKD KG+RHG AER LAA+
Sbjct: 162 EASDAALANMNGQYLLSKAISVDYAYKKDGKGERHGDEAERRLAAE 207
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D A +++ LD +V E ++++ F G ++ +GYGF+ F E +D
Sbjct: 107 DIGAELFINNLDPQVDEKILYDTFSTFGQILRQPNIVRDDNNISKGYGFVSFDSFEASDA 166
Query: 92 AIKIMNMIKLYGKPIRVNKA 111
A+ MN L K I V+ A
Sbjct: 167 ALANMNGQYLLSKAISVDYA 186
>gi|402078874|gb|EJT74139.1| splicing factor 3B subunit 4 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 409
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 116/250 (46%), Positives = 155/250 (62%), Gaps = 49/250 (19%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ATIYVG LD++ E+LMWE+ Q GPVVN+HMP DRV++THQGYGF+EF E ADYA
Sbjct: 11 EATIYVGNLDERFGESLMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDSPESADYAA 70
Query: 94 KIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+ +N I++YGK IRVNKAS+ Q+ ++GA +F+ NLDP+VDEK L+DTFS FG ++ TP
Sbjct: 71 RALNGIRVYGKVIRVNKASADKQRAAEIGAELFVNNLDPQVDEKTLFDTFSRFGQLV-TP 129
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
P ++RD + SKG+ F+N+ SF
Sbjct: 130 -------------------------------------PNVVRDANN-ISKGYGFVNFDSF 151
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFA 272
EASD + D M+GQYL ++ I+V YA+KKD KG+RHG AER LAA+ + H +
Sbjct: 152 EASDQARDTMNGQYLLSKQITVEYAYKKDGKGERHGDDAERKLAAEG------KKHNI-- 203
Query: 273 DAPPPAPLPP 282
P PLPP
Sbjct: 204 -VPEQQPLPP 212
>gi|223995445|ref|XP_002287396.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976512|gb|EED94839.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 305
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 121/253 (47%), Positives = 153/253 (60%), Gaps = 64/253 (25%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT YVG LD V+E ++ ELF Q G V +VHMPKD++T H GYGF+EF+ DADYAI
Sbjct: 4 EATCYVGNLDPSVTEDILVELFTQIGRVSSVHMPKDKITGLHSGYGFVEFLDVTDADYAI 63
Query: 94 KIMNMIKLYGKPIRVNKASSHQK----NLDVGANIFIGNLDP-EVDEKLLYDTFSAFGVI 148
+IM+M+KL+ +P+RVNK+S +K +LDVGAN+FIGNLDP +VDEKLLYDTFSAFG I
Sbjct: 64 QIMSMVKLFSRPLRVNKSSLDKKTGVGSLDVGANLFIGNLDPADVDEKLLYDTFSAFGTI 123
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFIN 208
++ PK IMRD T SKGF F++
Sbjct: 124 IRPPK--------------------------------------IMRDDMTNQSKGFGFVS 145
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAFKKDS----------------KG-----DRH 247
+ +FEASD +I+ MH QYL NR I+V YAFKK + KG +RH
Sbjct: 146 FDAFEASDLAIECMHNQYLGNRQITVQYAFKKGTTSSGGGENGDMVAEGGKGPGGMPERH 205
Query: 248 GSAAERLLAAQNP 260
GS AER+LAA NP
Sbjct: 206 GSRAERMLAAANP 218
>gi|400598668|gb|EJP66377.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 399
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 145/228 (63%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D DATIY+G +D++ + +M+E+ +Q GP+ N+HMP+DRVTQ+HQG+GF+EF DA+Y
Sbjct: 10 DKDATIYMGNIDERATPAMMYEIMLQMGPIHNIHMPRDRVTQSHQGFGFVEFRTPADAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A ++N +KL+GK +RVNKAS+ Q+ D+GA +F+GNLDP DEKLLYDTFS FG +L
Sbjct: 70 AASVVNGVKLFGKSLRVNKASADRQRATDIGAELFVGNLDPSADEKLLYDTFSRFGPLLS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK + RD D G SKGF F+++
Sbjct: 130 LPK--------------------------------------VARD-DAGVSKGFGFVSFG 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
FE++DA+++ + GQYL + ++V YAFKKD KGDRHG AER LA Q
Sbjct: 151 DFESADAAVEHLSGQYLLSNQVTVQYAFKKDGKGDRHGDQAERELAKQ 198
>gi|63054583|ref|NP_594001.2| U2 snRNP-associated RNA-binding protein Sap49 [Schizosaccharomyces
pombe 972h-]
gi|26399889|sp|O14102.2|SAP49_SCHPO RecName: Full=Spliceosome-associated protein 49
gi|159883972|emb|CAC19730.2| U2 snRNP-associated RNA-binding protein Sap49 [Schizosaccharomyces
pombe]
Length = 335
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 150/221 (67%), Gaps = 40/221 (18%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E + DATIY+G LD+KV++++++EL +Q+GPVVN+H+P+DRV +H G+GF EF+ E+D
Sbjct: 5 EDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQD 64
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQK-NLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
+YA +I+N +KL+GKPIRVN+AS + N +GAN+F+GNLDP VDE++LYDTFSA G
Sbjct: 65 VEYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQ 124
Query: 148 ILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFI 207
+++ P++ RD + G SKG+ F+
Sbjct: 125 LVKA--------------------------------------PQVARD-ENGRSKGYGFV 145
Query: 208 NYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
+Y SFE +DA+I+AM+ Q+L N+PI+VSYAFK++ KG+RHG
Sbjct: 146 SYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHG 186
>gi|322696259|gb|EFY88054.1| splicing factor 3b subunit 4 [Metarhizium acridum CQMa 102]
Length = 578
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 108/228 (47%), Positives = 145/228 (63%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +ATIY+G +D++ + ++E+ +Q GP+ N+HMP+DRVTQ HQG+GF+EF DA+Y
Sbjct: 30 DKEATIYIGNIDERATTATIYEIMLQMGPIHNIHMPRDRVTQNHQGFGFVEFRTPSDAEY 89
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +MN IKL+GK +RVNKAS+ QK D+GA +FIGNLDP VDEKLLYDTFS FG +L
Sbjct: 90 AANVMNGIKLFGKSLRVNKASADKQKGADIGAELFIGNLDPMVDEKLLYDTFSRFGPLLS 149
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK + RD D+G SKGF F+++
Sbjct: 150 LPK--------------------------------------VARD-DSGMSKGFGFVSFG 170
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
FE+SDA++ + GQY+ ++ +SV YAFKKD KG+RHG AER LA Q
Sbjct: 171 DFESSDAAVANLDGQYMLSKEVSVQYAFKKDGKGERHGDEAERELAKQ 218
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 79/140 (56%), Gaps = 39/140 (27%)
Query: 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLD 178
D+GA +FIGNLDP VDEKLLYDTFS FG +L PK
Sbjct: 280 DIGAVLFIGNLDPMVDEKLLYDTFSRFGPLLSLPK------------------------- 314
Query: 179 VGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238
+ RD D+G SKGF F+++ FE+SDA++ + GQY+ ++ +SV YAF
Sbjct: 315 -------------VARD-DSGMSKGFGFVSFGDFESSDAAVANLDGQYMLSKEVSVQYAF 360
Query: 239 KKDSKGDRHGSAAERLLAAQ 258
KKD KG+RHG AER LA Q
Sbjct: 361 KKDGKGERHGDEAERELAKQ 380
Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 17 QSLSQTKLEGGGESG-DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTH 75
+SL K + G D A +++G LD V E L+++ F + GP++++ +
Sbjct: 102 KSLRVNKASADKQKGADIGAELFIGNLDPMVDEKLLYDTFSRFGPLLSLPKVARDDSGMS 161
Query: 76 QGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111
+G+GF+ F E +D A+ ++ + K + V A
Sbjct: 162 KGFGFVSFGDFESSDAAVANLDGQYMLSKEVSVQYA 197
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A +++G LD V E L+++ F + GP++++ + +G+GF+ F E +D A+
Sbjct: 283 AVLFIGNLDPMVDEKLLYDTFSRFGPLLSLPKVARDDSGMSKGFGFVSFGDFESSDAAVA 342
Query: 95 IMNMIKLYGKPIRVNKA 111
++ + K + V A
Sbjct: 343 NLDGQYMLSKEVSVQYA 359
>gi|322705004|gb|EFY96593.1| splicing factor 3b subunit 4 [Metarhizium anisopliae ARSEF 23]
Length = 383
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 108/228 (47%), Positives = 145/228 (63%), Gaps = 40/228 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +ATIY+G +D++ + ++E+ +Q GP+ N+HMP+DRVTQ HQG+GF+EF DA+Y
Sbjct: 10 DKEATIYIGNIDERATTATIYEIMLQMGPIHNIHMPRDRVTQNHQGFGFVEFRTPSDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +MN IKL+GK +RVNKAS+ QK D+GA +FIGNLDP VDEKLLYDTFS FG +L
Sbjct: 70 AANVMNGIKLFGKSLRVNKASADKQKGADIGAELFIGNLDPMVDEKLLYDTFSRFGPLLS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK + RD D+G SKGF F+++
Sbjct: 130 LPK--------------------------------------VARD-DSGMSKGFGFVSFG 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
FE+SDA++ + GQY+ ++ +SV YAFKKD KG+RHG AER LA Q
Sbjct: 151 DFESSDAAVANLDGQYMLSKEVSVQYAFKKDGKGERHGDEAERELAKQ 198
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 17 QSLSQTKLEGGGESG-DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTH 75
+SL K + G D A +++G LD V E L+++ F + GP++++ +
Sbjct: 82 KSLRVNKASADKQKGADIGAELFIGNLDPMVDEKLLYDTFSRFGPLLSLPKVARDDSGMS 141
Query: 76 QGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111
+G+GF+ F E +D A+ ++ + K + V A
Sbjct: 142 KGFGFVSFGDFESSDAAVANLDGQYMLSKEVSVQYA 177
>gi|389644502|ref|XP_003719883.1| splicing factor 3B subunit 4 [Magnaporthe oryzae 70-15]
gi|351639652|gb|EHA47516.1| splicing factor 3B subunit 4 [Magnaporthe oryzae 70-15]
gi|440470016|gb|ELQ39105.1| splicing factor 3B subunit 4 [Magnaporthe oryzae Y34]
gi|440486255|gb|ELQ66139.1| splicing factor 3B subunit 4 [Magnaporthe oryzae P131]
Length = 407
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/250 (46%), Positives = 155/250 (62%), Gaps = 49/250 (19%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+YVG LD++ E LMWE+ Q GPVVN+HMP DRV++THQGYGF+EF E ADYA
Sbjct: 11 EATVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADYAA 70
Query: 94 KIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+ +N I+++GK IRVNKAS+ QK ++GA +F+ NLDP+VDEK+L+DTFS FG ++ TP
Sbjct: 71 RALNGIRVFGKVIRVNKASADKQKTAEIGAELFVNNLDPQVDEKILFDTFSRFGQLV-TP 129
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
P ++RD + SKG+ F+N+ SF
Sbjct: 130 -------------------------------------PNVVRDANN-ISKGYGFVNFDSF 151
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFA 272
EASD + D M+GQYL ++ I+V YA+KKD KG+RHG AER LAA+ + H +
Sbjct: 152 EASDTARDTMNGQYLLSKQITVEYAYKKDGKGERHGDEAERKLAAEG------KKHNI-- 203
Query: 273 DAPPPAPLPP 282
P PLPP
Sbjct: 204 -VPEQQPLPP 212
>gi|71030596|ref|XP_764940.1| spliceosome associated protein [Theileria parva strain Muguga]
gi|68351896|gb|EAN32657.1| spliceosome associated protein, putative [Theileria parva]
Length = 290
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/271 (41%), Positives = 167/271 (61%), Gaps = 54/271 (19%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD + E L+WE F+Q+G V ++++P+D+VT HQG+GF+E+ E DADYA+
Sbjct: 17 EATLYIGNLDLQADEELLWEFFMQAGRVKSINVPRDKVTGQHQGFGFVEYETEVDADYAL 76
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+N +KLY KP+++NKAS ++ +VGA +F+GNLD EVDE+LL+DTFSAFG +L
Sbjct: 77 KILNFVKLYHKPLKLNKASKDKEIREVGAKLFVGNLDDEVDERLLHDTFSAFGRVLSA-- 134
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+++R +G K +A +++ FE
Sbjct: 135 -------------------------------------KMVRSETSG--KTYAIVSFDDFE 155
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA++ M+GQ+LCN+PI VSYA+K+D+KG+RHG AAERL+A++ P + H A
Sbjct: 156 ASDAALRTMNGQFLCNKPIHVSYAYKEDTKGERHGGAAERLIASKRPKDYSK--HMAAAQ 213
Query: 274 A---------PPPAPLPPP--PPPINIMGLP 293
A PP P+ P PPP+ + GLP
Sbjct: 214 AQMPIANTFVPPQMPMYPVMNPPPVMMPGLP 244
>gi|281204013|gb|EFA78209.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 252
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 152/248 (61%), Gaps = 46/248 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA I V LD +V+E+L+WEL +Q+ PVV V MPKD++TQ H G +IEF E DADY +
Sbjct: 12 DACIQVRDLDPQVTESLLWELMIQAAPVVKVFMPKDKLTQQHSGRAYIEFQSEADADYVM 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+IMN +KL+G+P+++ K ++ +DVGAN+FIGNLD EVDEKLL+DTF FG I+Q PK
Sbjct: 72 RIMNYVKLFGRPLKLKKG--NKDKIDVGANLFIGNLDGEVDEKLLHDTFCQFGTIIQPPK 129
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRD +G SKGF F++Y +F
Sbjct: 130 --------------------------------------IMRDTSSGVSKGFGFVSYDNFT 151
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
+SD +I+AM+GQ+LCN+PISV+YA KKDS ++HG AERL+AA R FA
Sbjct: 152 SSDMAIEAMNGQFLCNKPISVTYARKKDST-EKHGGHAERLIAAGK-----QRGIPAFAQ 205
Query: 274 APPPAPLP 281
PA +P
Sbjct: 206 QGAPANMP 213
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 25 EGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEF 83
+G + D A +++G LD +V E L+ + F Q G ++ + +D + +G+GF+ +
Sbjct: 88 KGNKDKIDVGANLFIGNLDGEVDEKLLHDTFCQFGTIIQPPKIMRDTSSGVSKGFGFVSY 147
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKA 111
+D AI+ MN L KPI V A
Sbjct: 148 DNFTSSDMAIEAMNGQFLCNKPISVTYA 175
>gi|452841107|gb|EME43044.1| hypothetical protein DOTSEDRAFT_25030 [Dothistroma septosporum
NZE10]
Length = 388
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 109/226 (48%), Positives = 147/226 (65%), Gaps = 48/226 (21%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D D+T+YVG LD++ ++ L+WEL +Q+GPV+NVH+PKDRVTQ+HQGYGF+EF E+DADY
Sbjct: 10 DKDSTLYVGNLDERCTDALVWELMLQAGPVINVHLPKDRVTQSHQGYGFVEFGSEDDADY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQK---------NLDVGANIFIGNLDPEVDEKLLYDTF 142
A KIMN I+L+GKPIRVNKAS+ ++ VGA +FIGNLD DEK+LY+TF
Sbjct: 70 ACKIMNQIRLWGKPIRVNKASADKRNGENGGLGGGAGVGAELFIGNLDSLADEKVLYETF 129
Query: 143 SAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSK 202
S FG ++ PK+ + + NL SK
Sbjct: 130 SRFGPLVAAPKV----------------ARDESNL-----------------------SK 150
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
G+ F++YA+FE+SD +I+ MHGQYL N+ I+V YA+KKD KG+RHG
Sbjct: 151 GYGFVSYATFESSDQAIEHMHGQYLMNKEITVQYAYKKDGKGERHG 196
>gi|4263832|gb|AAD15475.1| putative spliceosome associated protein [Arabidopsis thaliana]
Length = 314
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/201 (56%), Positives = 135/201 (67%), Gaps = 42/201 (20%)
Query: 76 QGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP-EVD 134
Q +GF++F EEDADYAIK+ NMIKLYG+PIRV KAS +K+LDVGAN+F+GNLDP VD
Sbjct: 38 QKFGFVQFHNEEDADYAIKVFNMIKLYGEPIRVKKASQDKKSLDVGANLFLGNLDPVNVD 97
Query: 135 EKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMR 194
EK+L+DTFSAFGVI PK IMR
Sbjct: 98 EKMLHDTFSAFGVISDHPK--------------------------------------IMR 119
Query: 195 DPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
DPDTGN +GF FI+Y SFEASDA+I+AM GQYL NR I+V+YA+KKD+KG+RHG+ ERL
Sbjct: 120 DPDTGNPRGFGFISYDSFEASDAAIEAMTGQYLSNRQITVTYAYKKDTKGERHGTPEERL 179
Query: 255 LAAQNPLSQADRPHQLFADAP 275
LAA SQ RPH+LFA P
Sbjct: 180 LAAN---SQRSRPHKLFATGP 197
>gi|84995240|ref|XP_952342.1| splicing factor 3b subunit 4 [Theileria annulata strain Ankara]
gi|65302503|emb|CAI74610.1| splicing factor 3b subunit 4, putative [Theileria annulata]
Length = 290
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 150/227 (66%), Gaps = 41/227 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD + E L+WE F+Q+G V ++++P+D+VT HQG+GF+E+ E DADYA+
Sbjct: 17 EATLYIGNLDLQADEELLWEFFMQAGRVKSINIPRDKVTGQHQGFGFVEYETETDADYAL 76
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+N +KLY KP+++NKAS ++ +VGA +F+GNLD EVDE+LL+DTFSAFG +L
Sbjct: 77 KILNFVKLYHKPLKLNKASKDKEIREVGAKLFVGNLDDEVDERLLHDTFSAFGRVLSA-- 134
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+++R +G K +A +++ FE
Sbjct: 135 -------------------------------------KLVRSETSG--KTYAIVSFDDFE 155
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNP 260
ASDA++ M+GQ+LCN+PI VSYA+K+D+KG+RHG AAERL+A++ P
Sbjct: 156 ASDAALRTMNGQFLCNKPIHVSYAYKEDTKGERHGGAAERLIASKRP 202
>gi|300176697|emb|CBK24362.2| unnamed protein product [Blastocystis hominis]
Length = 314
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 146/237 (61%), Gaps = 38/237 (16%)
Query: 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
+ G E + +AT+YVGGLD++V E L+WELF+Q GPVV+V MPKD+V H + FIE+
Sbjct: 1 MSAGVEHRNEEATLYVGGLDERVDEELLWELFLQFGPVVSVSMPKDKVLNKHMEFAFIEY 60
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFS 143
E DA+YA + + I LYG+ IRVNK++ + LDVGA++FI NL P+V E ++ TFS
Sbjct: 61 QSEIDAEYASHVCDNITLYGRKIRVNKSNKDRPTLDVGADLFISNLAPDVTEDMIKTTFS 120
Query: 144 AFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKG 203
FG +L +PI I RDP+T SKG
Sbjct: 121 QFG------------QLACEPI--------------------------IARDPETNISKG 142
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNP 260
AF+NY SFE+SD I++M+GQY RPI V YA+KK ++G+RHGSAAERLLA NP
Sbjct: 143 HAFVNYTSFESSDFVIESMNGQYFHGRPIVVQYAYKKGTRGERHGSAAERLLAKSNP 199
>gi|413934108|gb|AFW68659.1| hypothetical protein ZEAMMB73_687460 [Zea mays]
Length = 270
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/179 (58%), Positives = 126/179 (70%), Gaps = 38/179 (21%)
Query: 98 MIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNM 157
MIKLYGKPIRVNKAS +K+LDVGAN+FIGNLDP+VDEKLLYDTFSAFGVI+ PK
Sbjct: 1 MIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK---- 56
Query: 158 IKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDA 217
IMRDP+TGNS+GF F++Y SFE+SD
Sbjct: 57 ----------------------------------IMRDPETGNSRGFGFVSYESFESSDQ 82
Query: 218 SIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFADAPP 276
+I+AM+ Q+LCNRPI+VSYA+KKD+KG+RHG+ AERLLAA NP SQ +RPH +FA PP
Sbjct: 83 AIEAMNNQHLCNRPITVSYAYKKDTKGERHGTPAERLLAANNPGSQKNRPHTMFASGPP 141
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVV-NVHMPKDRVTQTHQGYGFIEFMGEE 87
+S D A +++G LD V E L+++ F G +V N + +D T +G+GF+ + E
Sbjct: 19 KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYESFE 78
Query: 88 DADYAIKIMNMIKLYGKPIRVNKA 111
+D AI+ MN L +PI V+ A
Sbjct: 79 SSDQAIEAMNNQHLCNRPITVSYA 102
>gi|209882389|ref|XP_002142631.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209558237|gb|EEA08282.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 213
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 143/227 (62%), Gaps = 39/227 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y G LD++V E L+ ELF Q+GP+ +V++P+D+VT TH G+GFIEF D +YA
Sbjct: 26 EATLYCGNLDNRVDEELLAELFAQTGPIKSVYIPRDKVTGTHSGFGFIEFQQVLDCEYAQ 85
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+I+N +KLYGKPIR +KAS +K LD+GAN+F+GNL P++DEKLL+D FS FG ++ T
Sbjct: 86 RILNSVKLYGKPIRCSKASQDRKQLDIGANLFVGNLSPDIDEKLLHDIFSLFGNVISTKV 145
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I + + +G+ F++Y SF
Sbjct: 146 IFK---------------------------------------ENNEDERGYGFVSYDSFN 166
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNP 260
+SD +I ++GQ+ NR I+VSYAFK+D KG+RHGS AERLLA++N
Sbjct: 167 SSDNAIATLNGQFFGNRQITVSYAFKQDCKGERHGSTAERLLASKNT 213
>gi|401881427|gb|EJT45727.1| hypothetical protein A1Q1_05876 [Trichosporon asahii var. asahii
CBS 2479]
gi|406701589|gb|EKD04705.1| hypothetical protein A1Q2_00935 [Trichosporon asahii var. asahii
CBS 8904]
Length = 309
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/197 (52%), Positives = 126/197 (63%), Gaps = 38/197 (19%)
Query: 62 VNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVG 121
NV +PKDR++ HQG+GF EF+ EEDADYA KIMN IKL+GKPIRVNKAS +K LDVG
Sbjct: 21 ANVFLPKDRISMQHQGFGFCEFLSEEDADYACKIMNQIKLFGKPIRVNKASYDKKQLDVG 80
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGA 181
AN+FIGNLDP DE+ LYDTFS FG I + PK
Sbjct: 81 ANLFIGNLDPSTDEQALYDTFSTFGAIAEQPK---------------------------- 112
Query: 182 NIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
I RDP TG SKG+ F+++ FEASD +I+ M+ Q+L + +SV YAFKKD
Sbjct: 113 ----------IARDPATGESKGYGFVSFHDFEASDMAIENMNNQFLGGKQVSVQYAFKKD 162
Query: 242 SKGDRHGSAAERLLAAQ 258
KG+RHG+ AERLLAAQ
Sbjct: 163 GKGERHGTTAERLLAAQ 179
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +++G LD E +++ F G + + +D T +GYGF+ F E +D
Sbjct: 78 DVGANLFIGNLDPSTDEQALYDTFSTFGAIAEQPKIARDPATGESKGYGFVSFHDFEASD 137
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L GK + V A
Sbjct: 138 MAIENMNNQFLGGKQVSVQYA 158
>gi|330799143|ref|XP_003287607.1| hypothetical protein DICPUDRAFT_151707 [Dictyostelium purpureum]
gi|325082393|gb|EGC35876.1| hypothetical protein DICPUDRAFT_151707 [Dictyostelium purpureum]
Length = 266
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/267 (43%), Positives = 162/267 (60%), Gaps = 49/267 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA + V LD V+E+L+ ELF+Q+ PVV V +PKD++TQ H G ++EF DA+YA+
Sbjct: 12 DACLIVRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHTGRAYVEFQSSADAEYAL 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K+M ++L+ K I++ K S+ + +D+GAN+FIGNLD +VDE++L+DTFS FG IL TPK
Sbjct: 72 KVMKFVRLFNKEIKIKKESTDK--IDIGANLFIGNLDTDVDERILFDTFSRFGTILFTPK 129
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRD + G SKGF FI++ SF+
Sbjct: 130 --------------------------------------IMRD-ENGQSKGFGFISFDSFD 150
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASDA+I++++GQ+LCN+PISVSYA KKDS ++HGS AER++AA ++ +
Sbjct: 151 ASDAAIESLNGQFLCNKPISVSYARKKDS-NEKHGSKAERIIAASRSAGGFNQSGAI--- 206
Query: 274 APPPAP---LPPPPPPINIMGLPPPPP 297
PPP L PPPPP PP PP
Sbjct: 207 -PPPLTAGGLMPPPPPSFSTQQPPLPP 232
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A +++G LD V E ++++ F + G ++ + +D Q+ +G+GFI F + +D
Sbjct: 95 DIGANLFIGNLDTDVDERILFDTFSRFGTILFTPKIMRDENGQS-KGFGFISFDSFDASD 153
Query: 91 YAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA 122
AI+ +N L KPI V+ A N G+
Sbjct: 154 AAIESLNGQFLCNKPISVSYARKKDSNEKHGS 185
>gi|330934048|ref|XP_003304396.1| hypothetical protein PTT_16975 [Pyrenophora teres f. teres 0-1]
gi|311319032|gb|EFQ87532.1| hypothetical protein PTT_16975 [Pyrenophora teres f. teres 0-1]
Length = 328
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 111/249 (44%), Positives = 145/249 (58%), Gaps = 49/249 (19%)
Query: 11 ISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDR 70
+S P + Q K +AT+YVG L ++V+ ++ EL + +G V NV+MP DR
Sbjct: 1 MSAPSARHWEQNK----------EATVYVGNLHERVTPRILHELMLNTGRVRNVNMPVDR 50
Query: 71 VTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNL 129
V HQG+GF+EF EE+ADYA KIMN + LYG IRVNKAS+ QKN+++GA +FIGNL
Sbjct: 51 VNGQHQGFGFVEFHTEEEADYAPKIMNNVALYGSRIRVNKASADKQKNVEIGAELFIGNL 110
Query: 130 DPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLD 189
D VDE+ LYDTF FG ++ PK
Sbjct: 111 DHGVDERTLYDTFGQFGPLVNAPK------------------------------------ 134
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
I RD T SKG+ FI+Y FE+SDA+I MH QY+ ++ I+V YA+KKD KG+RHG
Sbjct: 135 --IARDEVTSESKGYGFISYGDFESSDAAIANMHNQYIMSKQITVQYAYKKDGKGERHGD 192
Query: 250 AAERLLAAQ 258
AERLLA Q
Sbjct: 193 EAERLLAKQ 201
>gi|50553138|ref|XP_503979.1| YALI0E15356p [Yarrowia lipolytica]
gi|49649848|emb|CAG79572.1| YALI0E15356p [Yarrowia lipolytica CLIB122]
Length = 225
Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 108/245 (44%), Positives = 152/245 (62%), Gaps = 41/245 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y+G LD+ V+E +++EL +Q+GP+V++++PKDRV+QTHQGYGF+E+ E DA+YA
Sbjct: 14 EATLYIGNLDENVTEAILYELMLQAGPIVHINLPKDRVSQTHQGYGFVEYKTEADANYAA 73
Query: 94 KIMNMIKLYGKPIRVNKASSHQKN-LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
IMN I L+GK IRV+K++S ++N ++GA +F+G+LDP VDE L TFS FG
Sbjct: 74 SIMNQIWLFGKSIRVSKSASDKQNGFEIGATLFVGSLDPLVDESTLQQTFSVFGP----- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
+ KP P I RD D G+SKG+ F+++ F
Sbjct: 129 --------FAKP-------------------------PRISRDTD-GSSKGYGFVSFTDF 154
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFA 272
E SD ++++M QYL N+ I+V+YAFK D KG RHG ERLLA Q +Q P Q
Sbjct: 155 EHSDRALESMDKQYLMNQQITVTYAFKHDGKGGRHGDETERLLALQAKKNQYIVPQQAI- 213
Query: 273 DAPPP 277
APPP
Sbjct: 214 QAPPP 218
>gi|189189942|ref|XP_001931310.1| spliceosome-associated protein 49 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972916|gb|EDU40415.1| spliceosome-associated protein 49 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 329
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 111/249 (44%), Positives = 145/249 (58%), Gaps = 49/249 (19%)
Query: 11 ISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDR 70
+S P + Q K +AT+YVG L ++V+ ++ EL + +G V NV+MP DR
Sbjct: 1 MSAPSARHWEQNK----------EATVYVGNLHERVTPRILHELMLNTGRVRNVNMPVDR 50
Query: 71 VTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNL 129
V HQG+GF+EF EE+ADYA KIMN + LYG IRVNKAS+ QKN+++GA +FIGNL
Sbjct: 51 VNGQHQGFGFVEFHTEEEADYAPKIMNNVALYGSRIRVNKASADKQKNVEIGAELFIGNL 110
Query: 130 DPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLD 189
D VDE+ LYDTF FG ++ PK
Sbjct: 111 DHGVDERTLYDTFGQFGPLVNAPK------------------------------------ 134
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
I RD T SKG+ FI+Y FE+SDA+I MH QY+ ++ I+V YA+KKD KG+RHG
Sbjct: 135 --IARDEVTSESKGYGFISYGDFESSDAAIANMHNQYIMSKQITVQYAYKKDGKGERHGD 192
Query: 250 AAERLLAAQ 258
AERLLA Q
Sbjct: 193 EAERLLAKQ 201
>gi|326481712|gb|EGE05722.1| splicing factor 3b subunit 4 [Trichophyton equinum CBS 127.97]
Length = 347
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 106/205 (51%), Positives = 137/205 (66%), Gaps = 40/205 (19%)
Query: 55 FVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS- 113
+Q+G +VNVH+PKDRVTQTHQGYGF+EF EEDA+YA +IMN ++LYGKPIRVNKAS+
Sbjct: 1 MLQAGRIVNVHLPKDRVTQTHQGYGFVEFNSEEDAEYASRIMNQVRLYGKPIRVNKASAD 60
Query: 114 HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSH 173
QK ++VGA +F+GNLDP V E++LYDTFS FG ++ PK
Sbjct: 61 KQKAVEVGAELFVGNLDPMVTEQVLYDTFSRFGSLISLPK-------------------- 100
Query: 174 QKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPIS 233
+ RD D+ SKG+ FI++++FEASD +I M+GQYL N+ IS
Sbjct: 101 ------------------VARD-DSNLSKGYGFISFSNFEASDDAIANMNGQYLMNKEIS 141
Query: 234 VSYAFKKDSKGDRHGSAAERLLAAQ 258
V YA+KKD KG+RHG AER+LAAQ
Sbjct: 142 VQYAYKKDGKGERHGDQAERMLAAQ 166
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A ++VG LD V+E ++++ F + G ++++ + +GYGFI F E +D AI
Sbjct: 69 AELFVGNLDPMVTEQVLYDTFSRFGSLISLPKVARDDSNLSKGYGFISFSNFEASDDAIA 128
Query: 95 IMNMIKLYGKPIRVNKA 111
MN L K I V A
Sbjct: 129 NMNGQYLMNKEISVQYA 145
>gi|169612257|ref|XP_001799546.1| hypothetical protein SNOG_09247 [Phaeosphaeria nodorum SN15]
gi|160702468|gb|EAT83439.2| hypothetical protein SNOG_09247 [Phaeosphaeria nodorum SN15]
Length = 306
Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 107/226 (47%), Positives = 142/226 (62%), Gaps = 40/226 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+YVG L ++VS ++ EL + +G V NV+MP DRV HQG+GF+EF EE+ADYA
Sbjct: 11 EATVYVGNLHERVSPRILHELMLNAGRVRNVNMPVDRVNGQHQGFGFVEFHTEEEADYAP 70
Query: 94 KIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
K+MN + L+G IRVNKAS+ QKN+++GA +FIGNLD VDEK LYDTF FG ++ P
Sbjct: 71 KVMNNVMLHGNRIRVNKASADKQKNVEIGAELFIGNLDQMVDEKTLYDTFGQFGPLINAP 130
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
K + RD ++ SKG+ FI+Y F
Sbjct: 131 K--------------------------------------VARD-ESNMSKGYGFISYGDF 151
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
E+SDA+I +MHGQY+ N+ ISV YA+KKD KG+RHG AER+LA Q
Sbjct: 152 ESSDAAIASMHGQYMMNKQISVQYAYKKDGKGERHGDEAERMLAKQ 197
>gi|326472489|gb|EGD96498.1| splicing factor 3b subunit 4 [Trichophyton tonsurans CBS 112818]
Length = 362
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/228 (46%), Positives = 142/228 (62%), Gaps = 57/228 (25%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++V++ L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVTDKLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFNSEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ QK ++VGA +F+GNLDP V E++ D
Sbjct: 70 ASRIMNQVRLYGKPIRVNKASADKQKAVEVGAELFVGNLDPMVTEQVARDD--------- 120
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
N+ K YG FI+++
Sbjct: 121 ----SNLSKGYG-------------------------------------------FISFS 133
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+FEASD +I M+GQYL N+ ISV YA+KKD KG+RHG AER+LAAQ
Sbjct: 134 NFEASDDAIANMNGQYLMNKEISVQYAYKKDGKGERHGDQAERMLAAQ 181
>gi|451999433|gb|EMD91895.1| hypothetical protein COCHEDRAFT_1154917 [Cochliobolus
heterostrophus C5]
Length = 331
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/249 (43%), Positives = 146/249 (58%), Gaps = 49/249 (19%)
Query: 11 ISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDR 70
+S P + Q K +AT+YVG L ++V+ ++ EL + +G V NV+MP DR
Sbjct: 1 MSAPSARHWEQNK----------EATVYVGNLHERVTPRILHELMLNTGRVRNVNMPVDR 50
Query: 71 VTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNL 129
V HQ +GF+EF E +ADYA KI+N + LYG IRVNKAS+ QKN+++GA +F+GNL
Sbjct: 51 VNGQHQSFGFVEFHTEAEADYASKILNNVALYGSRIRVNKASADKQKNVEIGAELFVGNL 110
Query: 130 DPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLD 189
DP VDEK LYDTFS FG ++ PK
Sbjct: 111 DPGVDEKTLYDTFSRFGPLVNAPK------------------------------------ 134
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
+ RD T SKG+ FI+Y FE+SDA+I +MH QY+ ++ I+V YA+KKD KG+RHG
Sbjct: 135 --VARDEVTTASKGYGFISYGDFESSDAAIASMHNQYIMSKQITVQYAYKKDGKGERHGD 192
Query: 250 AAERLLAAQ 258
AER+LA Q
Sbjct: 193 EAERMLAKQ 201
>gi|451854358|gb|EMD67651.1| hypothetical protein COCSADRAFT_168831 [Cochliobolus sativus
ND90Pr]
Length = 331
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/249 (43%), Positives = 146/249 (58%), Gaps = 49/249 (19%)
Query: 11 ISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDR 70
+S P + Q K +AT+YVG L ++V+ ++ EL + +G V NV+MP DR
Sbjct: 1 MSAPSARHWEQNK----------EATVYVGNLHERVTPRILHELMLNTGRVRNVNMPVDR 50
Query: 71 VTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNL 129
V HQ +GF+EF E +ADYA KI+N + LYG IRVNKAS+ QKN+++GA +F+GNL
Sbjct: 51 VNGQHQSFGFVEFHTEAEADYASKILNNVALYGSRIRVNKASADKQKNVEIGAELFVGNL 110
Query: 130 DPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLD 189
DP VDEK LYDTFS FG ++ PK
Sbjct: 111 DPGVDEKTLYDTFSRFGPLVNAPK------------------------------------ 134
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
+ RD T SKG+ FI+Y FE+SDA+I +MH QY+ ++ I+V YA+KKD KG+RHG
Sbjct: 135 --VARDEVTTASKGYGFISYGDFESSDAAIASMHNQYIMSKQITVQYAYKKDGKGERHGD 192
Query: 250 AAERLLAAQ 258
AER+LA Q
Sbjct: 193 EAERMLAKQ 201
>gi|396494938|ref|XP_003844425.1| hypothetical protein LEMA_P020760.1 [Leptosphaeria maculans JN3]
gi|312221005|emb|CBY00946.1| hypothetical protein LEMA_P020760.1 [Leptosphaeria maculans JN3]
Length = 344
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/249 (44%), Positives = 147/249 (59%), Gaps = 50/249 (20%)
Query: 11 ISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDR 70
+S P + Q K +AT+Y G L ++V+ ++ EL + +G V NV+MP DR
Sbjct: 1 MSAPSARHWEQNK----------EATVYCGNLHERVTPRILHELMLNAGRVRNVNMPVDR 50
Query: 71 VTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNL 129
V HQG+GF+E+ EE+ADYA KIMN I LYG IRVNKAS+ Q+N+++GA +FIGNL
Sbjct: 51 VNGQHQGFGFVEYHTEEEADYAPKIMNNIALYGTRIRVNKASADKQRNVEIGAELFIGNL 110
Query: 130 DPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLD 189
D VDEK LYDTF FG ++ PKI + + NL
Sbjct: 111 DAMVDEKTLYDTFGQFGPLVNAPKI----------------ARDEANL------------ 142
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
SKG+ FI+Y FE+SDA+I +MHGQY+ N+ ISV YA+KKD KG+RHG
Sbjct: 143 -----------SKGYGFISYGDFESSDAAIASMHGQYIMNKQISVQYAYKKDGKGERHGD 191
Query: 250 AAERLLAAQ 258
AER+LA Q
Sbjct: 192 EAERMLAKQ 200
>gi|225683056|gb|EEH21340.1| spliceosome-associated protein [Paracoccidioides brasiliensis Pb03]
Length = 200
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/225 (46%), Positives = 145/225 (64%), Gaps = 41/225 (18%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++V+++L+WEL +Q+G +VNVH+PKDRVTQTHQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN ++LYGKPIRVNKAS+ QK ++VGA +FIGNLDP V E++LYDTFS FG ++
Sbjct: 70 AARIMNQVRLYGKPIRVNKASADKQKTVEVGAELFIGNLDPMVTEQILYDTFSRFGSLIS 129
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
PK I RD D SKG+ F++++
Sbjct: 130 APK--------------------------------------IARD-DANLSKGYGFVSFS 150
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD-RHGSAAERL 254
+FEASD +I M+G+YL N+ + G+ RHG AER+
Sbjct: 151 NFEASDDAIANMNGRYLMNKGGGGGNTPTIKTAGEKRHGDGAERM 195
>gi|219130389|ref|XP_002185349.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403264|gb|EEC43218.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 328
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 111/262 (42%), Positives = 160/262 (61%), Gaps = 53/262 (20%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E + DAT+YVG LD SE L+ ELF Q G V +V+MPKD+++ H GYGF+E++ D
Sbjct: 8 EHRNQDATVYVGNLDQACSEELLTELFSQVGRVASVYMPKDKLSGQHNGYGFVEYLDAVD 67
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSH----QKNLDVGANIFIGNLDP-EVDEKLLYDTFS 143
ADYA+ I++M+KL+G+P+RV+K+S + + + D+GAN+FIGN+DP +V+E+LLY+TF+
Sbjct: 68 ADYAMTILHMMKLFGRPVRVSKSSLNDEEGRHSRDIGANLFIGNVDPIDVNEQLLYETFT 127
Query: 144 AFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKG 203
AFG +++TP I RD T SKG
Sbjct: 128 AFGTLVRTPN--------------------------------------IARDEATQQSKG 149
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG----DRHGSAAERLLAAQN 259
FAF++Y SF+A+D +I+ M+GQYL NR I V+YA+KKD+ G +RHGS AER+LA
Sbjct: 150 FAFLSYDSFQAADMAIELMNGQYLGNRQIQVNYAWKKDANGNITNERHGSRAERMLA--- 206
Query: 260 PLSQADRPHQLFADAPPPAPLP 281
+A R +Q + P P
Sbjct: 207 ---EAKRANQQLGPSGPTLFRP 225
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 114/259 (44%), Gaps = 105/259 (40%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVI--LQTPK-------------------------- 153
A +++GNLD E+LL + FS G + + PK
Sbjct: 14 ATVYVGNLDQACSEELLTELFSQVGRVASVYMPKDKLSGQHNGYGFVEYLDAVDADYAMT 73
Query: 154 IMNMIKLYGKPIRVNKASSH----QKNLDVGANIFIGNLDP------------------- 190
I++M+KL+G+P+RV+K+S + + + D+GAN+FIGN+DP
Sbjct: 74 ILHMMKLFGRPVRVSKSSLNDEEGRHSRDIGANLFIGNVDPIDVNEQLLYETFTAFGTLV 133
Query: 191 ---EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG--- 244
I RD T SKGFAF++Y SF+A+D +I+ M+GQYL NR I V+YA+KKD+ G
Sbjct: 134 RTPNIARDEATQQSKGFAFLSYDSFQAADMAIELMNGQYLGNRQIQVNYAWKKDANGNIT 193
Query: 245 -DRHGSAAERLLAAQNPLSQA--------DRPHQLFADA--------------------- 274
+RHGS AER+LA +Q RP+ FA
Sbjct: 194 NERHGSRAERMLAEAKRANQQLGPSGPTLFRPNSTFASTGQQSTGSFLPPPPPPPLSSMP 253
Query: 275 ------------------P 275
P
Sbjct: 254 PPPPPLPPLAGSAIPPPPP 272
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 14 PCLQSLSQTKLEGGGESGDGDATIYVGGLD-DKVSETLMWELFVQSGPVVNV-HMPKDRV 71
P S S E G S D A +++G +D V+E L++E F G +V ++ +D
Sbjct: 84 PVRVSKSSLNDEEGRHSRDIGANLFIGNVDPIDVNEQLLYETFTAFGTLVRTPNIARDEA 143
Query: 72 TQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDV 120
TQ +G+ F+ + + AD AI++MN L + I+VN A N ++
Sbjct: 144 TQQSKGFAFLSYDSFQAADMAIELMNGQYLGNRQIQVNYAWKKDANGNI 192
>gi|290999559|ref|XP_002682347.1| predicted protein [Naegleria gruberi]
gi|284095974|gb|EFC49603.1| predicted protein [Naegleria gruberi]
Length = 204
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 104/233 (44%), Positives = 148/233 (63%), Gaps = 42/233 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ATI+VG LD +V E L+WELFVQ GPVV+ +P+DR+T TH GY F+EF E DA+YAI
Sbjct: 5 EATIFVGNLDQQVDEELLWELFVQMGPVVDAKIPRDRITNTHSGYAFVEFKHEHDANYAI 64
Query: 94 KIMNMIKLYGKPIRVNKASSHQ--KNLDVGANIFIGNLDP--EVDEKLLYDTFSAFGVIL 149
++MN IKL+G+P+++N+ + KNLDVGAN+++GNLDP DE +L + F FGV++
Sbjct: 65 QVMNQIKLFGRPMKLNRYDQDKSAKNLDVGANLWVGNLDPVGVSDEGILRELFGQFGVMI 124
Query: 150 QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINY 209
Q P I RDP+T SKGFAF++Y
Sbjct: 125 QNT-------------------------------------PRIQRDPETMESKGFAFVSY 147
Query: 210 ASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLS 262
+FE++DA+ ++GQY+ +PI V YAFK +S+ +R+GS AER LAA+ P++
Sbjct: 148 DNFESADAAKMHLNGQYISGKPIIVEYAFKPNSR-ERYGSEAERELAAKRPIT 199
>gi|346322787|gb|EGX92385.1| splicing factor 3b subunit 4 [Cordyceps militaris CM01]
Length = 404
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 143/238 (60%), Gaps = 50/238 (21%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +ATIY+G +D++ + M+E+ +Q GP+ N+HMP+DRVTQ+HQG+GF+EF DA+Y
Sbjct: 10 DKEATIYMGNIDERATPATMYEIMLQMGPIHNIHMPRDRVTQSHQGFGFVEFRTPSDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQK-----------NLDVGANIFIGNLDPEVDEKLLYD 140
A +MN +KLYGK +RVNKAS+ ++ D+GA +F+GNLDP DEK+LYD
Sbjct: 70 AAAVMNGVKLYGKSLRVNKASADRRGGGAGGPNGGGTTDIGAELFVGNLDPSCDEKVLYD 129
Query: 141 TFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200
TFS FG +L PK I RD D
Sbjct: 130 TFSRFGPLLSLPK--------------------------------------IARD-DNAV 150
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
SKGF FI++A F+++D +I+ + G YL ++ ++V +AFK+D KG+RHG +ER LA Q
Sbjct: 151 SKGFGFISFADFDSADEAIETLSGTYLLSQQVTVQFAFKRDGKGERHGDKSERELAMQ 208
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
+ D A ++VG LD E ++++ F + GP++++ +G+GFI F + A
Sbjct: 106 TTDIGAELFVGNLDPSCDEKVLYDTFSRFGPLLSLPKIARDDNAVSKGFGFISFADFDSA 165
Query: 90 DYAIKIMNMIKLYGKPIRVNKA 111
D AI+ ++ L + + V A
Sbjct: 166 DEAIETLSGTYLLSQQVTVQFA 187
>gi|441636543|ref|XP_004093131.1| PREDICTED: LOW QUALITY PROTEIN: splicing factor 3B subunit 4
[Nomascus leucogenys]
Length = 372
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/109 (83%), Positives = 102/109 (93%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTF 142
KIMNMIKLYGKPIRVNKAS+H NLDVGANIF+GNLDPE+DEKLLYDT+
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNXNLDVGANIFVGNLDPEIDEKLLYDTW 120
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 61/106 (57%), Gaps = 30/106 (28%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
KIMNMIKLYGKPIRVNKAS+H NLDVGANIF+GNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNXNLDVGANIFVGNLDPEI 111
>gi|213402019|ref|XP_002171782.1| spliceosome-associated protein [Schizosaccharomyces japonicus
yFS275]
gi|211999829|gb|EEB05489.1| spliceosome-associated protein [Schizosaccharomyces japonicus
yFS275]
Length = 303
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 146/222 (65%), Gaps = 42/222 (18%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E + +ATIY+G LDDKV++++++EL +Q+GPVV++H+P+DR+ TH G+GF E+ E D
Sbjct: 4 EEKNQEATIYIGNLDDKVTDSILFELCLQAGPVVHIHIPRDRIRATHNGFGFCEYATEAD 63
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLD--VGANIFIGNLDPEVDEKLLYDTFSAFG 146
A+YA +++N +KL+GK IRVNK SS KN +GAN+F+GNLD VDEK+L+DTFSAFG
Sbjct: 64 AEYACQVLNQVKLFGKAIRVNK-SSQDKNTQSVIGANVFVGNLDTLVDEKVLFDTFSAFG 122
Query: 147 VILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAF 206
++Q P+++RD D+G SKG+ F
Sbjct: 123 QMVQP--------------------------------------PQVVRD-DSGKSKGYGF 143
Query: 207 INYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
+ + SFEA DA+I+AM+ + N+ I+VSYA+K++ KGD+HG
Sbjct: 144 VFFDSFEAGDAAIEAMNNHFFMNKTITVSYAYKREGKGDKHG 185
>gi|156102134|ref|XP_001616760.1| spliceosome-associated protein 49 [Plasmodium vivax Sal-1]
gi|148805634|gb|EDL47033.1| spliceosome-associated protein 49, putative [Plasmodium vivax]
Length = 479
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 146/231 (63%), Gaps = 40/231 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ +AT+Y+ LD +V E ++ ELF+Q G V NVH+P+D++ H GYGF+E+ E + +Y
Sbjct: 17 NNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGFHAGYGFVEYEYEYECEY 76
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
A K++NM KL+GKP+R NKAS +++ DVGAN+FIGNLD EVDEK+L+D FS+FG ++
Sbjct: 77 AGKVLNMTKLFGKPLRCNKASQDKRSFDVGANLFIGNLDAEVDEKMLFDIFSSFGQLVTV 136
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
I+RD + SKG FI+Y +
Sbjct: 137 ---------------------------------------RIIRD-ENDTSKGHGFISYDN 156
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLS 262
FE+SD +I+ M+ Q++CN+ + +SYAFKKDSKG+RHG+AAER +AA LS
Sbjct: 157 FESSDMAIENMNNQFICNKKVHISYAFKKDSKGERHGTAAERFIAANKALS 207
>gi|389585768|dbj|GAB68498.1| spliceosome-associated protein 49, partial [Plasmodium cynomolgi
strain B]
Length = 229
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 147/231 (63%), Gaps = 40/231 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ +AT+Y+ LD +V E ++ ELF+Q G V NVH+P+D++ H GYGF+E+ E + +Y
Sbjct: 17 NNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGFHAGYGFVEYEYEYECEY 76
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
A K++NM KL+GKP+R NKAS ++ DVGAN+FIGNLD EVDEK+L+D FS+FG ++
Sbjct: 77 AGKVLNMTKLFGKPLRCNKASQDKRTFDVGANLFIGNLDAEVDEKMLFDIFSSFGQVV-- 134
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
+R+ I + DT SKG FI+Y +
Sbjct: 135 ------------TVRI------------------------IRNEDDT--SKGHGFISYDN 156
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLS 262
FE+SD +I+ M+ Q++CN+ + +SYAFKKDSKG+RHG+AAER +AA L+
Sbjct: 157 FESSDMAIENMNNQFICNKKVHISYAFKKDSKGERHGTAAERFIAANKALN 207
>gi|66475928|ref|XP_627780.1| U2 snRNP. Hsh49p, RRM domain containing protein [Cryptosporidium
parvum Iowa II]
gi|46229319|gb|EAK90168.1| U2 snRNP. Hsh49p, RRM domain containing protein [Cryptosporidium
parvum Iowa II]
Length = 216
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/227 (44%), Positives = 144/227 (63%), Gaps = 38/227 (16%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ +AT+Y G L++KV E ++ ELF Q GPV +VH+P+D+VT H G+GFIEF D +Y
Sbjct: 20 NQEATLYCGNLENKVDEEMLAELFSQCGPVKSVHIPRDKVTGHHSGFGFIEFEFVSDVEY 79
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
A K+MN IKL+ K IR KAS+ +K LD+GAN+++GNL PE+DEK L+ FS FG IL +
Sbjct: 80 AQKVMNSIKLFTKQIRCCKASNDRKPLDIGANLYVGNLSPEIDEKFLFYLFSNFGKIL-S 138
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
KI +GN D + + K AFIN++S
Sbjct: 139 LKI------------------------------VGN-------DQSSQSPKNSAFINFSS 161
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
F+ SD++I A++GQ+ CN+ ISVSYAFK++SK ++HG+ AERLL ++
Sbjct: 162 FQESDSAIQALNGQFFCNQQISVSYAFKQNSKNEKHGNYAERLLESK 208
>gi|67623141|ref|XP_667853.1| splicing factor [Cryptosporidium hominis TU502]
gi|32399025|emb|CAD98265.1| splicing factor, probable [Cryptosporidium parvum]
gi|54659016|gb|EAL37616.1| splicing factor [Cryptosporidium hominis]
Length = 213
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/227 (44%), Positives = 144/227 (63%), Gaps = 38/227 (16%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ +AT+Y G L++KV E ++ ELF Q GPV +VH+P+D+VT H G+GFIEF D +Y
Sbjct: 17 NQEATLYCGNLENKVDEEMLAELFSQCGPVKSVHIPRDKVTGHHSGFGFIEFEFVSDVEY 76
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
A K+MN IKL+ K IR KAS+ +K LD+GAN+++GNL PE+DEK L+ FS FG IL +
Sbjct: 77 AQKVMNSIKLFTKQIRCCKASNDRKPLDIGANLYVGNLSPEIDEKFLFYLFSNFGKIL-S 135
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
KI +GN D + + K AFIN++S
Sbjct: 136 LKI------------------------------VGN-------DQSSQSPKNSAFINFSS 158
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
F+ SD++I A++GQ+ CN+ ISVSYAFK++SK ++HG+ AERLL ++
Sbjct: 159 FQESDSAIQALNGQFFCNQQISVSYAFKQNSKNEKHGNYAERLLESK 205
>gi|124808629|ref|XP_001348367.1| spliceosome-associated protein, putative [Plasmodium falciparum
3D7]
gi|23497260|gb|AAN36806.1|AE014819_17 spliceosome-associated protein, putative [Plasmodium falciparum
3D7]
Length = 484
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/227 (43%), Positives = 143/227 (62%), Gaps = 40/227 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ +AT+Y+ LD +V E ++ ELF+Q G V NVH+P+D++ H GYGF+E+ E + +Y
Sbjct: 17 NNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECEY 76
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
A I+NM KL+GK +R NKA+ +++ DVGAN+FIGNLD EVDEK+L+D FS+FG I+
Sbjct: 77 AANILNMTKLFGKALRCNKATQDKRSFDVGANLFIGNLDDEVDEKMLFDIFSSFGQIMTV 136
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
++MR+ D SKG FI+Y +
Sbjct: 137 ---------------------------------------KVMRNED-DTSKGHGFISYDN 156
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
FE+SD +I+ M+ Q++CN+ + +SYAFKKDSKG+RHG+AAER +AA
Sbjct: 157 FESSDLAIENMNNQFICNKKVHISYAFKKDSKGERHGTAAERFIAAN 203
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 17 QSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQ 76
++L K S D A +++G LDD+V E +++++F G ++ V + ++ T +
Sbjct: 89 KALRCNKATQDKRSFDVGANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNE-DDTSK 147
Query: 77 GYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111
G+GFI + E +D AI+ MN + K + ++ A
Sbjct: 148 GHGFISYDNFESSDLAIENMNNQFICNKKVHISYA 182
>gi|340914842|gb|EGS18183.1| hypothetical protein CTHT_0061980 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 392
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 134/211 (63%), Gaps = 40/211 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVG +D++ + L+ EL Q GPV VHMP+DRV+QTHQGYGF+EF A+YA
Sbjct: 11 DATVYVGNIDERFTHELLSELMTQVGPVRQVHMPQDRVSQTHQGYGFVEFDTPASAEYAA 70
Query: 94 KIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
K++N I+++GKPIRVNKAS+ QK +D+GA +FI NLDP VDEK+LYDTFS FG IL+
Sbjct: 71 KVLNGIRIWGKPIRVNKASADKQKTVDIGAELFINNLDPLVDEKILYDTFSQFGTILR-- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
P ++RD + SKG+ F+++ SF
Sbjct: 129 ------------------------------------QPNVVRD-ENNISKGYGFVSFDSF 151
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
EASDA+I M+GQYL ++ I+V YA+KKD K
Sbjct: 152 EASDAAIANMNGQYLLSKQITVEYAYKKDGK 182
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVV---NVHMPKDRVTQTHQGYGFIEFMGEED 88
D A +++ LD V E ++++ F Q G ++ NV ++ +++ GYGF+ F E
Sbjct: 97 DIGAELFINNLDPLVDEKILYDTFSQFGTILRQPNVVRDENNISK---GYGFVSFDSFEA 153
Query: 89 ADYAIKIMNMIKLYGKPIRVNKA 111
+D AI MN L K I V A
Sbjct: 154 SDAAIANMNGQYLLSKQITVEYA 176
>gi|66827787|ref|XP_647248.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74997530|sp|Q55GD6.1|SF3B4_DICDI RecName: Full=Splicing factor 3B subunit 4
gi|60475375|gb|EAL73310.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 359
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 146/224 (65%), Gaps = 42/224 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+A + + LD V+E+L+ ELF+Q+ PVV V +PKD++TQ H G ++EF DA+YA+
Sbjct: 12 EACLLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYAL 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K+M ++L+ K I++ K + + +D+GAN+FIGNLD +VDE++L+DTFS FG I+ TPK
Sbjct: 72 KVMKFVRLFNKEIKIKKENKDK--VDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPK 129
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+MRD + G SKGFAFIN+ SFE
Sbjct: 130 --------------------------------------VMRD-ENGVSKGFAFINFDSFE 150
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAA 257
ASDA+I+AM+ Q+LCN+PISV+YA KKDS +RHGS+AER++AA
Sbjct: 151 ASDAAIEAMNSQFLCNKPISVTYARKKDS-NERHGSSAERIIAA 193
>gi|82914993|ref|XP_728927.1| splicing factor 3b subunit 4 [Plasmodium yoelii yoelii 17XNL]
gi|23485610|gb|EAA20492.1| splicing factor 3b subunit 4 [Plasmodium yoelii yoelii]
Length = 415
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 144/230 (62%), Gaps = 40/230 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ +AT+Y+ LD +V E ++ ELF+Q G V NVH+P+D++ H GYGF+E+ E + +Y
Sbjct: 17 NNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGFHLGYGFVEYEYEYECEY 76
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
A K++NM +L+GKP+R NKA+ +K+ DVGAN+FIGNLD EV+EK+L+D FS+FG ++
Sbjct: 77 AGKVLNMTRLFGKPLRCNKATQDKKSFDVGANLFIGNLDTEVEEKMLFDIFSSFGQVISV 136
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
+ N + DT SKG FI+Y +
Sbjct: 137 KVVRN--------------------------------------EDDT--SKGHGFISYDN 156
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPL 261
FE+SD +I+ M+ Q++CN+ + +SYAFKK KG+RHG+AAER +AA PL
Sbjct: 157 FESSDLAIENMNNQFICNKKVHISYAFKKGFKGERHGTAAERFIAANKPL 206
>gi|68073863|ref|XP_678846.1| spliceosome-associated protein [Plasmodium berghei strain ANKA]
gi|56499442|emb|CAH97651.1| spliceosome-associated protein, putative [Plasmodium berghei]
Length = 366
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 143/227 (62%), Gaps = 40/227 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ +AT+Y+ LD +V E ++ ELF+Q G V NVH+P+D++ H GYGF+E+ E + +Y
Sbjct: 17 NNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGFHLGYGFVEYEYEYECEY 76
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
A K++NM +L+GKP+R NKA+ +K+ DVGAN+FIGNLD EV+EK+L+D FS+FG ++
Sbjct: 77 AGKVLNMTRLFGKPLRCNKATQDKKSFDVGANLFIGNLDTEVEEKMLFDIFSSFGQVISV 136
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
+I+R+ D SKG FI+Y +
Sbjct: 137 ---------------------------------------KIVRNEDDT-SKGHGFISYDN 156
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
FE+SD +I+ M+ Q++CN+ + +SYAFKK KG+RHG+AAER +AA
Sbjct: 157 FESSDLAIENMNNQFICNKKVHISYAFKKGFKGERHGTAAERFIAAN 203
>gi|70948340|ref|XP_743694.1| spliceosome-associated protein [Plasmodium chabaudi chabaudi]
gi|56523315|emb|CAH77774.1| spliceosome-associated protein, putative [Plasmodium chabaudi
chabaudi]
Length = 394
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 143/226 (63%), Gaps = 40/226 (17%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ +AT+Y+ LD +V E ++ ELF+Q G V NVH+P+D++ H GYGF+E+ E + +Y
Sbjct: 17 NNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGFHLGYGFVEYEYEYECEY 76
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
A K++NM +L+GKP+R NKA+ +K+ DVGAN+FIGNLD EV+EK+L+D FS+FG ++
Sbjct: 77 AGKVLNMTRLFGKPLRCNKATQDKKSFDVGANLFIGNLDTEVEEKMLFDIFSSFGQVISV 136
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
+I+R+ D SKG FI+Y +
Sbjct: 137 ---------------------------------------KIVRNED-DTSKGHGFISYDN 156
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAA 257
FE+SD +I+ M+ Q++CN+ + +SYAFKK KG+RHG+AAER +AA
Sbjct: 157 FESSDLAIENMNNQFICNKKVHISYAFKKGFKGERHGTAAERFIAA 202
>gi|83771650|dbj|BAE61780.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871241|gb|EIT80403.1| splicing factor 3b, subunit 4 [Aspergillus oryzae 3.042]
Length = 139
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 112/129 (86%), Gaps = 1/129 (0%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++V+++L+WEL +Q+G +VNVH+PKDRVTQ+HQGYGF+EF+ EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFISEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN I+LYGKPIRVNKAS+ QK++++GA +F+GNLDP V E++LY+TFS FG ++
Sbjct: 70 ASRIMNGIRLYGKPIRVNKASADKQKSVEIGAELFVGNLDPMVTEQVLYNTFSRFGNLIN 129
Query: 151 TPKIMNMIK 159
PK+M+ I+
Sbjct: 130 LPKVMSTIR 138
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 29/103 (28%)
Query: 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT--------------------------- 151
D A ++IGNLD V + L+++ G I+
Sbjct: 10 DKEATVYIGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFISEEDAEY 69
Query: 152 -PKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEI 192
+IMN I+LYGKPIRVNKAS+ QK++++GA +F+GNLDP +
Sbjct: 70 ASRIMNGIRLYGKPIRVNKASADKQKSVEIGAELFVGNLDPMV 112
>gi|344302677|gb|EGW32951.1| hypothetical protein SPAPADRAFT_150389 [Spathaspora passalidarum
NRRL Y-27907]
Length = 256
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 132/247 (53%), Gaps = 63/247 (25%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+Y G +D + +E LM+ELF+Q GPV +++MPKDR+ +THQGYGF+EF +DA+Y +
Sbjct: 28 NATLYFGNIDPRATELLMYELFIQFGPVRSINMPKDRILRTHQGYGFVEFRSSKDAEYVL 87
Query: 94 KIMNMIKLYGKPIRVNKASSHQKN----------------------LDVGANIFIGNLDP 131
I+ ++LYGK +++ K + + +DVGA +FI NL+
Sbjct: 88 DILRGVRLYGKLVKLKKVDGKESSKRTQIGREGRGNVTESVVLPGYVDVGAKLFINNLNE 147
Query: 132 EVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPE 191
VDEK L DTF FG ++QTP
Sbjct: 148 LVDEKFLSDTFGKFGTLIQTP--------------------------------------- 168
Query: 192 IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD--RHGS 249
I++ D G S GFAF+NY SF +SD +I+ M+G L N ISV YAFK +S G RHG
Sbjct: 169 IVKRDDEGKSLGFAFLNYDSFNSSDLAIEKMNGVILMNSKISVGYAFKSESGGKRIRHGD 228
Query: 250 AAERLLA 256
ERLLA
Sbjct: 229 KVERLLA 235
>gi|448123377|ref|XP_004204677.1| Piso0_000540 [Millerozyma farinosa CBS 7064]
gi|448125660|ref|XP_004205235.1| Piso0_000540 [Millerozyma farinosa CBS 7064]
gi|358249868|emb|CCE72934.1| Piso0_000540 [Millerozyma farinosa CBS 7064]
gi|358350216|emb|CCE73495.1| Piso0_000540 [Millerozyma farinosa CBS 7064]
Length = 256
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 135/246 (54%), Gaps = 61/246 (24%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+A++Y +D +V+E L++ELF+Q GPV +++PKDR+ +THQGYGF+EF +DA+Y +
Sbjct: 16 NASLYFSNIDYQVTELLLYELFIQFGPVRTLNLPKDRILKTHQGYGFVEFKTAKDAEYVL 75
Query: 94 KIMNMIKLYGKPIRVNKASSHQKN------------------LDVGANIFIGNLDPEVDE 135
+I+ I+L+GK +++ K H K +DVGA +FI NL P VDE
Sbjct: 76 EILRGIRLFGKVLKLKKVDPHFKTNPSASASNQVAPTPTMSGVDVGAKLFIKNLHPLVDE 135
Query: 136 KLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRD 195
K+L DTFS FG I++ P + RD
Sbjct: 136 KMLRDTFSKFGNIIRP--------------------------------------PVVARD 157
Query: 196 PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD-----SKGDRHGSA 250
PD+G SKG+ FI Y F ASD +I+ M+G L N ISVSYA+K + +K +HG
Sbjct: 158 PDSGASKGYGFITYDDFAASDLAIEKMNGVILTNNKISVSYAYKDELVGSSNKRAKHGDK 217
Query: 251 AERLLA 256
AERLLA
Sbjct: 218 AERLLA 223
>gi|221060330|ref|XP_002260810.1| spliceosome-associated protein [Plasmodium knowlesi strain H]
gi|193810884|emb|CAQ42782.1| spliceosome-associated protein, putative [Plasmodium knowlesi
strain H]
Length = 514
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 139/260 (53%), Gaps = 79/260 (30%)
Query: 42 LDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTH-------------------------- 75
LD +V E ++ ELF+Q G V NVH+P+D++ H
Sbjct: 43 LDAQVDEEILCELFMQCGNVKNVHIPRDKINGFHAGRRCTLVGEARIVLYTSPVCTSLTY 102
Query: 76 -------------QGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA 122
GYGF+E+ E + +YA K++NM KL+GKP+R NKAS +K+ DVGA
Sbjct: 103 VSSHTHTHTHIYTSGYGFVEYEYEYECEYAGKVLNMTKLFGKPLRCNKASQDKKSFDVGA 162
Query: 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGAN 182
N+FIGNLD EVDEK+L+D FS+FG ++
Sbjct: 163 NLFIGNLDAEVDEKMLFDIFSSFGQVVTV------------------------------- 191
Query: 183 IFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242
I+R+ D S+G FI+Y +FE+SD +I+ M+ Q++CN+ + +SYAFKKDS
Sbjct: 192 --------RIIRNEDD-TSRGHGFISYDNFESSDMAIENMNNQFICNKKVHISYAFKKDS 242
Query: 243 KGDRHGSAAERLLAAQNPLS 262
KG+RHG+AAER +AA LS
Sbjct: 243 KGERHGTAAERFIAANKALS 262
>gi|294659049|ref|XP_461388.2| DEHA2F24068p [Debaryomyces hansenii CBS767]
gi|202953578|emb|CAG89795.2| DEHA2F24068p [Debaryomyces hansenii CBS767]
Length = 252
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 137/241 (56%), Gaps = 57/241 (23%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++Y G LD +V+E L++ELF+Q P+ ++++PKDRV +THQGYGFIEF +DA+Y +
Sbjct: 17 ASLYFGNLDPQVTEPLLYELFIQFAPIRSLNLPKDRVLKTHQGYGFIEFRTIKDAEYVLN 76
Query: 95 IMNMIKLYGKPIRVNKA------SSHQ--------KNLDVGANIFIGNLDPEVDEKLLYD 140
I+ I+LYGK +++ KA SS Q +D+GA IFI NL+P +DE+ L D
Sbjct: 77 ILRGIRLYGKMLKLKKAEPNFKGSSQQSVGVTTTSNAMDIGAKIFINNLNPLIDEQSLAD 136
Query: 141 TFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200
TFS FG ++++ P I+RDP++G
Sbjct: 137 TFSKFGTLVRS--------------------------------------PSIIRDPESGE 158
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD-SKGD----RHGSAAERLL 255
SKG+ FI++ F +SD +I+ M G L N +SV+YAFK D + G +HG ERLL
Sbjct: 159 SKGYGFISFNDFASSDTAIEKMDGAILMNSKVSVTYAFKDDPTSGQQMKVKHGDKVERLL 218
Query: 256 A 256
A
Sbjct: 219 A 219
>gi|302762268|ref|XP_002964556.1| hypothetical protein SELMODRAFT_3379 [Selaginella moellendorffii]
gi|302825197|ref|XP_002994230.1| hypothetical protein SELMODRAFT_3378 [Selaginella moellendorffii]
gi|300137901|gb|EFJ04697.1| hypothetical protein SELMODRAFT_3378 [Selaginella moellendorffii]
gi|300168285|gb|EFJ34889.1| hypothetical protein SELMODRAFT_3379 [Selaginella moellendorffii]
Length = 204
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 136/246 (55%), Gaps = 47/246 (19%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT YVG LD +V+E ++WELF Q V +V++P+D++T H GYGF+E E DYA+
Sbjct: 5 DATAYVGNLDPQVTEDILWELFTQVARVQSVYIPRDKITTAHSGYGFVELANETAVDYAV 64
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+N +LYG+ IR++KAS K+ +VGAN+F+GNL VD LL FS FG ++ +
Sbjct: 65 KILNNCRLYGRCIRMSKAS--HKDENVGANLFVGNLSRTVDNYLLGSIFSGFGRVVYSSV 122
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+ + D G+ F++Y FE
Sbjct: 123 VHS----------------------------------------DDQTRPGYGFVHYDCFE 142
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASD +I++M Q++ N+ +SVSYA KKDS G+ HGS AER +AA+NP DR +
Sbjct: 143 ASDLAIESMDKQFIENQQVSVSYARKKDS-GELHGSPAEREIAAKNP----DRKPHIIPK 197
Query: 274 APPPAP 279
PP P
Sbjct: 198 FQPPLP 203
>gi|260940088|ref|XP_002614344.1| hypothetical protein CLUG_05830 [Clavispora lusitaniae ATCC 42720]
gi|238852238|gb|EEQ41702.1| hypothetical protein CLUG_05830 [Clavispora lusitaniae ATCC 42720]
Length = 222
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 133/230 (57%), Gaps = 45/230 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD +VSETL++ELF+Q+GPV ++H+PKDR+++ HQG+GF+EF +DADYA++
Sbjct: 16 ASVYVGNLDPQVSETLLYELFIQAGPVRSLHLPKDRISREHQGFGFVEFRTAQDADYAVE 75
Query: 95 IMNMIKLYGKPIRVNK------ASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
+ ++L+G+ +++ K + L VGA +F+GNL+P VDE+ L +TF+ FG +
Sbjct: 76 LFRGVRLFGRTLKMKKTDPQSTTETETSGLSVGARLFVGNLNPLVDEQYLRETFNKFGAL 135
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFIN 208
+ G+P+ + RD + G KG F+
Sbjct: 136 V------------GRPV--------------------------LARD-ENGTPKGHGFVE 156
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
++ FE+SD ++ M+G L N I V YA+K K RHG ERLLA Q
Sbjct: 157 FSDFESSDDALSKMNGAILMNSRIKVEYAYKDGDKHIRHGDEVERLLAQQ 206
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 3 LGREIQAGISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVV 62
GR ++ + P QS ++T+ G A ++VG L+ V E + E F + G +V
Sbjct: 83 FGRTLKMKKTDP--QSTTETETSGLSVG----ARLFVGNLNPLVDEQYLRETFNKFGALV 136
Query: 63 NVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111
+ T +G+GF+EF E +D A+ MN L I+V A
Sbjct: 137 GRPVLARDENGTPKGHGFVEFSDFESSDDALSKMNGAILMNSRIKVEYA 185
>gi|150866142|ref|XP_001385635.2| hypothetical protein PICST_84754 [Scheffersomyces stipitis CBS
6054]
gi|149387398|gb|ABN67606.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 246
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 129/237 (54%), Gaps = 53/237 (22%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA++Y G LD +V+E +M+ELF+Q P+ ++MPKDR+ +THQGYGF+EF DADYA+
Sbjct: 16 DASLYFGNLDPEVTELIMYELFIQFAPLRYLNMPKDRILKTHQGYGFVEFRTVRDADYAL 75
Query: 94 KIMNMIKLYGKPIRVNKA-------SSHQK-------NLDVGANIFIGNLDPEVDEKLLY 139
I+ ++LYGK +++ KA SS + ++VGA +F+ NL P VDE+ L
Sbjct: 76 DILRGVRLYGKQLKIKKAEPPKSGTSSESQFVGATGGAINVGAKLFLNNLSPLVDEQFLR 135
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+TFS FG +++ +P + RDP+TG
Sbjct: 136 ETFSKFGTLIK--------------------------------------NPVVARDPETG 157
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLA 256
S+G+ F+ + F D I M G L N ISVSYAFK D K RHG ERLLA
Sbjct: 158 ESRGYGFLTFDDFTVCDEVIAKMDGALLMNGKISVSYAFKDDKKA-RHGDKVERLLA 213
>gi|190344642|gb|EDK36359.2| hypothetical protein PGUG_00457 [Meyerozyma guilliermondii ATCC
6260]
Length = 229
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 136/246 (55%), Gaps = 60/246 (24%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
AT+YVG LD +V+E L++EL +Q P+ ++++PKDRV+ THQGYGF+EF G EDA+Y ++
Sbjct: 17 ATLYVGNLDPQVNEALLYELLIQFAPIRSLNLPKDRVSGTHQGYGFVEFRGIEDANYVLE 76
Query: 95 IMNMIKLYGKPIRVNKA-----------------SSHQKNLDVGANIFIGNLDPEVDEKL 137
I+ ++LYGK +++ +A +S +DVGA +F+GNLDP +DE+
Sbjct: 77 ILRGVRLYGKSLKLRRADPNSRGAAGTTSNFANNNSVTNAVDVGAKLFVGNLDPLIDEQY 136
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L++TFS FG +++ P ++RD +
Sbjct: 137 LHETFSKFGTMVRPPV--------------------------------------VIRDSE 158
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD-----SKGDRHGSAAE 252
TG SK F+ + F+ +D+ I+ M+G L N IS+ YAFK+D K RHG E
Sbjct: 159 TGESKRHGFLTFGDFQTTDSVIEKMNGAVLMNASISIDYAFKEDPANSNQKRIRHGDKVE 218
Query: 253 RLLAAQ 258
R+LAA
Sbjct: 219 RMLAAN 224
>gi|344233005|gb|EGV64878.1| hypothetical protein CANTEDRAFT_104351 [Candida tenuis ATCC 10573]
Length = 241
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 139/234 (59%), Gaps = 48/234 (20%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+A++Y+G LD KV+ET+++ELFVQ PV ++H+PKDRV + HQG+GF+EF +D +Y +
Sbjct: 16 EASLYIGNLDPKVTETILYELFVQFAPVRSLHLPKDRVLRAHQGFGFVEFKNPKDTEYVV 75
Query: 94 KIMNMIKLYGKPIRVN-----KASSHQ-----KNLDVGANIFIGNLDPEVDEKLLYDTFS 143
+ ++LYGK +R+ K SS Q DVGA IF+ NL+P +DEK L +TFS
Sbjct: 76 SALKGVRLYGKLLRLRQLEAGKPSSTQPSKSVSTADVGAKIFVNNLNPLIDEKFLAETFS 135
Query: 144 AFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKG 203
AFG ++ + P+I+RDP TG SKG
Sbjct: 136 AFGTVIGS--------------------------------------PQIVRDPQTGESKG 157
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAA 257
F+++ F++SD +I++++G+ L N I+V+YAFK ++ RHG AER+LAA
Sbjct: 158 HGFVDFDDFDSSDKAIESLNGKMLMNCLITVAYAFKGTNQKVRHGDKAERVLAA 211
>gi|412988957|emb|CCO15548.1| predicted protein [Bathycoccus prasinos]
Length = 247
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 86/198 (43%), Positives = 114/198 (57%), Gaps = 48/198 (24%)
Query: 86 EEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVG----ANIFIGNLDPEVDEKLLYDT 141
EED +Y +KI+NMIK++GKPIRVNKAS AN+F+GNLD E+DEK+LYDT
Sbjct: 4 EEDCEYCVKILNMIKVFGKPIRVNKASQDGGKGGGDVGVGANVFVGNLDAEIDEKMLYDT 63
Query: 142 FSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201
FSAFG ++ PK + RDP++G S
Sbjct: 64 FSAFGSVITAPK--------------------------------------VQRDPESGES 85
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPL 261
+GF F+ + SFEASD +I+AMHGQ+L + I+V YA+KKD+ G+RHGS AERLLA
Sbjct: 86 RGFGFVQFDSFEASDRAIEAMHGQFLAGKQITVVYAYKKDTNGERHGSQAERLLAQAGMQ 145
Query: 262 SQAD------RPHQLFAD 273
+ RPH +F+D
Sbjct: 146 NNGGYGGRQLRPHAMFSD 163
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
A ++VG LD ++ E ++++ F G V+ + +D + +G+GF++F E +D AI
Sbjct: 44 ANVFVGNLDAEIDEKMLYDTFSAFGSVITAPKVQRDPESGESRGFGFVQFDSFEASDRAI 103
Query: 94 KIMNMIKLYGKPIRV 108
+ M+ L GK I V
Sbjct: 104 EAMHGQFLAGKQITV 118
>gi|146422279|ref|XP_001487080.1| hypothetical protein PGUG_00457 [Meyerozyma guilliermondii ATCC
6260]
Length = 229
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 135/246 (54%), Gaps = 60/246 (24%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
AT+YVG LD +V+E L++EL +Q P+ ++++PKDRV THQGYGF+EF G EDA+Y ++
Sbjct: 17 ATLYVGNLDPQVNEALLYELLIQFAPIRSLNLPKDRVLGTHQGYGFVEFRGIEDANYVLE 76
Query: 95 IMNMIKLYGKPIRVNKA-----------------SSHQKNLDVGANIFIGNLDPEVDEKL 137
I+ ++LYGK +++ +A +S +DVGA +F+GNLDP +DE+
Sbjct: 77 ILRGVRLYGKSLKLRRADPNSRGAAGTTSNFANNNSVTNAVDVGAKLFVGNLDPLIDEQY 136
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L++TFS FG +++ P ++RD +
Sbjct: 137 LHETFSKFGTMVRPPV--------------------------------------VIRDSE 158
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD-----SKGDRHGSAAE 252
TG SK F+ + F+ +D+ I+ M+G L N IS+ YAFK+D K RHG E
Sbjct: 159 TGESKRHGFLTFGDFQTTDSVIEKMNGAVLMNALISIDYAFKEDPANSNQKRIRHGDKVE 218
Query: 253 RLLAAQ 258
R+LAA
Sbjct: 219 RMLAAN 224
>gi|406602156|emb|CCH46282.1| Spliceosome-associated protein 49 [Wickerhamomyces ciferrii]
Length = 210
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/226 (42%), Positives = 127/226 (56%), Gaps = 43/226 (19%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
D T+YVG LD+KV + L++ELF+Q P+ N+H+PKDR+ +THQGYGF+EF +D +YA
Sbjct: 13 DCTVYVGNLDEKVHDGLLYELFIQIAPIKNIHLPKDRILRTHQGYGFVEFKNVKDTEYAE 72
Query: 94 KIMNMIKLYGKPIRVNKASSHQK---NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
KIMN IKLYGK +RVN+AS++ LD GA +FI NLD VDE LL F FGV
Sbjct: 73 KIMNGIKLYGKNLRVNRASNNASNNDKLDTGATLFIKNLDDLVDENLLQTIFKQFGVFF- 131
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
KP P I RD + GNSK FI Y
Sbjct: 132 ------------KP-------------------------PVISRD-EQGNSKHHGFIYYK 153
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAF-KKDSKGDRHGSAAERLL 255
+F+ SD +I M+ Q + N+ + + YA KK+ K +HG ERLL
Sbjct: 154 TFKDSDNAIAKMNNQMILNKKVQIDYALKKKNGKAVKHGDQVERLL 199
Score = 37.4 bits (85), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG----YGFIEFMGEE 87
D AT+++ LDD V E L+ +F Q G V +++ QG +GFI + +
Sbjct: 101 DTGATLFIKNLDDLVDENLLQTIFKQFG----VFFKPPVISRDEQGNSKHHGFIYYKTFK 156
Query: 88 DADYAIKIMNMIKLYGKPIRVNKA 111
D+D AI MN + K ++++ A
Sbjct: 157 DSDNAIAKMNNQMILNKKVQIDYA 180
>gi|238883601|gb|EEQ47239.1| hypothetical protein CAWG_05803 [Candida albicans WO-1]
Length = 259
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 127/249 (51%), Gaps = 65/249 (26%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA++Y G +D +V+E LM+ELF+Q GPV +++MPKDR+ +THQGYGF+EF DA Y +
Sbjct: 16 DASLYFGNIDPQVTELLMYELFIQFGPVKSINMPKDRILKTHQGYGFVEFKNSADAKYTM 75
Query: 94 KIMNMIKLYGKPIRVN----KASSHQKN-------------------LDVGANIFIGNLD 130
+I+ I+LYGK +++ K+ S N +DVGA +FI NL+
Sbjct: 76 EILRGIRLYGKALKLKRIDAKSQSSTNNPNNQTIGTFVQSDLINPNYIDVGAKLFINNLN 135
Query: 131 PEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 190
P VDE L DTFS FG +++ P
Sbjct: 136 PLVDESFLMDTFSKFGTLIRNP-------------------------------------- 157
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK---DSKGDRH 247
I+R G+S G+ F+ Y FE+SD I M+ L N I++SYAFK D K RH
Sbjct: 158 -IIRRDSEGHSLGYGFLTYDDFESSDLCIQKMNNTILMNNKITISYAFKDSSVDGKKSRH 216
Query: 248 GSAAERLLA 256
G ER LA
Sbjct: 217 GDQVERTLA 225
>gi|68482438|ref|XP_714851.1| likely U2-associated splicing factor [Candida albicans SC5314]
gi|68482559|ref|XP_714789.1| likely U2-associated splicing factor [Candida albicans SC5314]
gi|46436383|gb|EAK95746.1| likely U2-associated splicing factor [Candida albicans SC5314]
gi|46436448|gb|EAK95810.1| likely U2-associated splicing factor [Candida albicans SC5314]
Length = 259
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 127/249 (51%), Gaps = 65/249 (26%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA++Y G +D +V+E LM+ELF+Q GPV +++MPKDR+ +THQGYGF+EF DA Y +
Sbjct: 16 DASLYFGNIDPQVTELLMYELFIQFGPVKSINMPKDRILKTHQGYGFVEFKNSADAKYTM 75
Query: 94 KIMNMIKLYGKPIRVN----KASSHQKN-------------------LDVGANIFIGNLD 130
+I+ I+LYGK +++ K+ S N +DVGA +FI NL+
Sbjct: 76 EILRGIRLYGKALKLKRIDAKSQSSTNNPNNQTIGTFVQSDLINPNYIDVGAKLFINNLN 135
Query: 131 PEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 190
P VDE L DTFS FG +++ P
Sbjct: 136 PLVDESFLMDTFSKFGTLIRNP-------------------------------------- 157
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK---DSKGDRH 247
I+R G+S G+ F+ Y FE+SD I M+ L N I++SYAFK D K RH
Sbjct: 158 -IIRRDSEGHSLGYGFLTYDDFESSDLCIQKMNNTILMNNKITISYAFKDLSVDGKKSRH 216
Query: 248 GSAAERLLA 256
G ER LA
Sbjct: 217 GDQVERKLA 225
>gi|147840632|emb|CAN68319.1| hypothetical protein VITISV_032191 [Vitis vinifera]
Length = 312
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/121 (65%), Positives = 90/121 (74%), Gaps = 21/121 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT YVG LD +V+E L+WELFVQ+GPVVNV++PKDRVT HQGYGF+EF EEDADYAI
Sbjct: 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K++NMIKLYGKPIRVNK +VDEKLLYDTFSAFGVI+ PK
Sbjct: 84 KVLNMIKLYGKPIRVNK---------------------DVDEKLLYDTFSAFGVIVTNPK 122
Query: 154 I 154
I
Sbjct: 123 I 123
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 99/219 (45%), Gaps = 70/219 (31%)
Query: 106 IRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT-------------- 151
+ N H + A ++GNLDP+V E+LL++ F G ++
Sbjct: 9 VGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGY 68
Query: 152 --------------PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
K++NMIKLYGKPIRVNK ++D +++ D
Sbjct: 69 GFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-----------------DVDEKLLYD-- 109
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAA 257
+++F G + N I+VSYA+KKD+KG+RHG+ AER+LAA
Sbjct: 110 ----------TFSAF-----------GVIVTNPKITVSYAYKKDTKGERHGTPAERVLAA 148
Query: 258 QNPLSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPP 296
NP + RPH LFA PP LP P MG P PP
Sbjct: 149 SNPSAPKSRPHTLFASGPP--TLPNVPQANGNMGAPMPP 185
>gi|167539870|ref|XP_001741392.1| splicing factor 3B subunit [Entamoeba dispar SAW760]
gi|165894094|gb|EDR22178.1| splicing factor 3B subunit, putative [Entamoeba dispar SAW760]
Length = 199
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 131/224 (58%), Gaps = 42/224 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+A +Y LD+KV E L++EL +Q+GPVVNV +P+DR++ H+G G++EF + DADYA+
Sbjct: 14 EAIVYCSDLDEKVDEQLLYELMIQAGPVVNVSIPRDRISNQHKGIGYVEFQHDYDADYAV 73
Query: 94 KIM-NMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
K+ + IKLYGK ++ ++ +K++D+GAN+F+ +D V E L D F FG I+ +
Sbjct: 74 KVFGDNIKLYGKQVKFSRNVQLKKSVDIGANLFVSGIDDSVSETTLSDAFRNFGNIISSV 133
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
KI +KN G N FAFI+Y +F
Sbjct: 134 KI-------------------EKNEKTGKN---------------------FAFISYDNF 153
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLA 256
+ASD +I M+GQ + + ISV YAF K+ KG+R+G A+ERLLA
Sbjct: 154 DASDKAIANMNGQMMGGKQISVEYAF-KNKKGERYGDASERLLA 196
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVV-NVHMPKDRVTQTHQGYGFIEFMGEE 87
+S D A ++V G+DD VSET + + F G ++ +V + K+ +T + + FI + +
Sbjct: 97 KSVDIGANLFVSGIDDSVSETTLSDAFRNFGNIISSVKIEKNE--KTGKNFAFISYDNFD 154
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQK 116
+D AI MN + GK I V A ++K
Sbjct: 155 ASDKAIANMNGQMMGGKQISVEYAFKNKK 183
>gi|7270986|emb|CAB77630.1| spliceosome-associated essential protein [Candida albicans]
Length = 257
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 127/249 (51%), Gaps = 65/249 (26%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA++Y G +D +V+E LM+ELF+Q GPV +++MPKDR+ +THQGYGF+EF DA Y +
Sbjct: 14 DASLYFGNIDPQVTELLMYELFIQFGPVKSINMPKDRILKTHQGYGFVEFKNSADAKYTM 73
Query: 94 KIMNMIKLYGKPIRVN----KASSHQKN-------------------LDVGANIFIGNLD 130
+I+ I+LYGK +++ K+ S N +DVGA +FI NL+
Sbjct: 74 EILRGIRLYGKALKLKRIDAKSQSSTNNPNNQTIGTFVQSDLINPNYIDVGAKLFINNLN 133
Query: 131 PEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 190
P VDE L DTFS FG +++ P
Sbjct: 134 PLVDESFLMDTFSKFGTLIRNP-------------------------------------- 155
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK---DSKGDRH 247
I+R G+S G+ F+ Y FE+SD I M+ L N I++SYAFK D K RH
Sbjct: 156 -IIRRDSEGHSLGYGFLTYDDFESSDLCIQKMNNTILMNNKIAISYAFKDSSVDGKKSRH 214
Query: 248 GSAAERLLA 256
G ER LA
Sbjct: 215 GDQVERKLA 223
>gi|440293376|gb|ELP86502.1| splicing factor 3B subunit, putative [Entamoeba invadens IP1]
Length = 199
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 135/225 (60%), Gaps = 43/225 (19%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
++T+ LD +VSE L++EL +Q+GPV++V +P+DRV+ H+G G++E+ + DADY++
Sbjct: 14 ESTVCCTDLDQQVSEGLLYELMIQAGPVMSVSIPRDRVSGQHRGVGYVEYKSDRDADYSV 73
Query: 94 KIM-NMIKLYGKPIRVNKASSHQKN-LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
KI + + L+GK ++ N+++ ++ +D+GAN+F+ NLD VDE LL+ TF FG ++
Sbjct: 74 KIFSDNVYLFGKLVKFNRSNQVRRGAIDIGANLFVNNLDKSVDESLLHSTFCNFGNLVSP 133
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
PKI + DT + K +AFINY S
Sbjct: 134 PKI----------------------------------------NTDTKSGKVYAFINYDS 153
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLA 256
F+A+D +I ++GQ L + ISV YAF K+ +G+R+G+AAER LA
Sbjct: 154 FDAADKAIANLNGQMLSGKQISVEYAF-KNKRGERYGTAAERFLA 197
>gi|183230140|ref|XP_655332.2| splicing factor 3B subunit 4 [Entamoeba histolytica HM-1:IMSS]
gi|169803064|gb|EAL49944.2| splicing factor 3B subunit 4, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449710589|gb|EMD49637.1| splicing factor 3B subunit 4, putative [Entamoeba histolytica KU27]
Length = 199
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 130/224 (58%), Gaps = 42/224 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+A +Y LD+KV E L++EL +Q+GPVVN+ +P+DR++ H+G ++EF + DADYA+
Sbjct: 14 EAIVYCSDLDEKVDEQLLYELMIQAGPVVNISIPRDRISNQHKGVAYVEFQHDYDADYAV 73
Query: 94 KIM-NMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
K+ + IKLYGK ++ ++ +K++D+GAN+F+ +D V E L D F FG I+ +
Sbjct: 74 KVFGDNIKLYGKQVKFSRNIQLKKSVDIGANLFVSGIDDSVSEIALSDAFRNFGNIISSV 133
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
KI +KN G N FAFI+Y +F
Sbjct: 134 KI-------------------EKNEKTGKN---------------------FAFISYDNF 153
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLA 256
+ASD +I M+GQ + + ISV YAF K+ KG+R+G A+ERLLA
Sbjct: 154 DASDKAIANMNGQMMGGKQISVEYAF-KNKKGERYGDASERLLA 196
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVV-NVHMPKDRVTQTHQGYGFIEFMGEE 87
+S D A ++V G+DD VSE + + F G ++ +V + K+ +T + + FI + +
Sbjct: 97 KSVDIGANLFVSGIDDSVSEIALSDAFRNFGNIISSVKIEKNE--KTGKNFAFISYDNFD 154
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQK 116
+D AI MN + GK I V A ++K
Sbjct: 155 ASDKAIANMNGQMMGGKQISVEYAFKNKK 183
>gi|407037930|gb|EKE38853.1| splicing factor 3B subunit 4, putative [Entamoeba nuttalli P19]
Length = 199
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 130/224 (58%), Gaps = 42/224 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+A +Y LD+KV E L++EL +Q+GPV+N+ +P+DR++ H+G ++EF + DADYA+
Sbjct: 14 EAIVYCSDLDEKVDEQLLYELMIQAGPVINISIPRDRISNQHKGVAYVEFQHDYDADYAV 73
Query: 94 KIM-NMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
K+ + IKLYGK ++ ++ +K++D+GAN+F+ +D V E L D F FG I+ +
Sbjct: 74 KVFGDNIKLYGKQVKFSRNIQLKKSVDIGANLFVSGIDDSVSEIALSDAFRNFGNIISSV 133
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
KI +KN G N FAFI+Y +F
Sbjct: 134 KI-------------------EKNEKTGKN---------------------FAFISYDNF 153
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLA 256
+ASD +I M+GQ + + ISV YAF K+ KG+R+G A+ERLLA
Sbjct: 154 DASDKAIANMNGQMMGGKQISVEYAF-KNKKGERYGDASERLLA 196
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVV-NVHMPKDRVTQTHQGYGFIEFMGEE 87
+S D A ++V G+DD VSE + + F G ++ +V + K+ +T + + FI + +
Sbjct: 97 KSVDIGANLFVSGIDDSVSEIALSDAFRNFGNIISSVKIEKNE--KTGKNFAFISYDNFD 154
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQK 116
+D AI MN + GK I V A ++K
Sbjct: 155 ASDKAIANMNGQMMGGKQISVEYAFKNKK 183
>gi|241951780|ref|XP_002418612.1| RNA binding protein, putative; spliceosome associated protein,
putative [Candida dubliniensis CD36]
gi|223641951|emb|CAX43915.1| RNA binding protein, putative [Candida dubliniensis CD36]
Length = 259
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 125/249 (50%), Gaps = 65/249 (26%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+A++Y G +D +V+E LM+ELF+Q GP+ +++MPKDR+ +THQGYGF+EF DA Y +
Sbjct: 16 EASLYFGNIDPQVTELLMYELFIQFGPIKSINMPKDRILKTHQGYGFVEFKNSADAKYTM 75
Query: 94 KIMNMIKLYGKPIRVNKASSH-----------------QKNL------DVGANIFIGNLD 130
I+ ++LYGK +++ + + Q NL DVGA +FI NL+
Sbjct: 76 DILRGVRLYGKALKLKRIDAKSSAPTNSTNNQTIGTFVQSNLINPNYIDVGAKLFINNLN 135
Query: 131 PEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 190
P VDE L DTFS FG +++ P
Sbjct: 136 PLVDESFLMDTFSKFGTLIRNP-------------------------------------- 157
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK---DSKGDRH 247
I+R G+S G F+ Y FE+SD I M+ L N I+++YAFK D K RH
Sbjct: 158 -IIRRDSEGHSLGHGFLTYDDFESSDLCIQKMNNTILMNNKITINYAFKDSTIDGKKSRH 216
Query: 248 GSAAERLLA 256
G ER LA
Sbjct: 217 GDQVERKLA 225
>gi|159163578|pdb|1X5U|A Chain A, Solution Structure Of Rrm Domain In Splicing Factor 3b
Length = 105
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/85 (82%), Positives = 79/85 (92%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 15 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 74
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNL 118
KIM+MIKLYGKPIRVNKAS+H KNL
Sbjct: 75 KIMDMIKLYGKPIRVNKASAHNKNL 99
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 30/91 (32%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 11 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 68
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNL 177
KIM+MIKLYGKPIRVNKAS+H KNL
Sbjct: 69 DADYAIKIMDMIKLYGKPIRVNKASAHNKNL 99
>gi|255725032|ref|XP_002547445.1| hypothetical protein CTRG_01752 [Candida tropicalis MYA-3404]
gi|240135336|gb|EER34890.1| hypothetical protein CTRG_01752 [Candida tropicalis MYA-3404]
Length = 257
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 127/253 (50%), Gaps = 67/253 (26%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ +A++Y G +D + E LM+ELF+Q GP+ +++MPKDR+ +THQGYGF+EF +DA Y
Sbjct: 14 NSNASLYFGNIDPQADEILMYELFIQFGPIKSLNMPKDRILKTHQGYGFVEFRNIDDAKY 73
Query: 92 AIKIMNMIKLYGKPIRVNK----------------------ASSHQKN---LDVGANIFI 126
+ I+ ++L+GK +++ K SS N +DVGA +FI
Sbjct: 74 TLDILRGVRLFGKALKLKKIDSRSSTTSTSNNALNQTIGTFVSSDLINPNYIDVGAKLFI 133
Query: 127 GNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIG 186
NL+P +DEK L DTFS FG +++TP I
Sbjct: 134 NNLNPLIDEKFLADTFSKFGTLIRTPAI-------------------------------- 161
Query: 187 NLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK---DSK 243
R G S G AF+ Y FE+SD I M+ L N ISV+YAFK+ D K
Sbjct: 162 -------RRDSEGQSMGNAFLTYDDFESSDLCIQKMNNAILMNNKISVTYAFKEQSVDGK 214
Query: 244 GDRHGSAAERLLA 256
RHG ER LA
Sbjct: 215 RARHGDEVERRLA 227
>gi|255715615|ref|XP_002554089.1| KLTH0E14036p [Lachancea thermotolerans]
gi|238935471|emb|CAR23652.1| KLTH0E14036p [Lachancea thermotolerans CBS 6340]
Length = 209
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 127/227 (55%), Gaps = 47/227 (20%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YVG +D KVS+ L++ELF+Q GPV + PKD+V QTHQG+ F+EF +DA+YA K
Sbjct: 11 TVYVGNVDPKVSKELLYELFLQIGPVAKIRYPKDKVLQTHQGFAFVEFNSPQDAEYASKC 70
Query: 96 M-NMIKLYGKPIRVNKAS------SHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
+ N ++LY + ++V KA+ + Q LDVGA +FI N+D VD ++L F FG +
Sbjct: 71 LNNTVRLYDRTLKVRKANGASSSPTSQNALDVGAKLFIKNIDELVDSEMLTKIFGKFGSL 130
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFIN 208
++ P+I L ++R A+I
Sbjct: 131 VRPPEIF-------------------------------TLKQGLLR---------CAYIC 150
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLL 255
Y++FE SDA+++ ++ Q + N+ IS+ YA+K+ SK ++HG ERLL
Sbjct: 151 YSTFEHSDAALEKLNNQMVMNKCISIDYAYKEGSKTEKHGDEVERLL 197
>gi|354548123|emb|CCE44859.1| hypothetical protein CPAR2_406620 [Candida parapsilosis]
Length = 248
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 126/245 (51%), Gaps = 64/245 (26%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+A++Y G +D + +E LM+ELFVQ GPV N++MPKDRV +THQGYGF+EF DA Y
Sbjct: 16 NASLYFGNIDPQCTELLMYELFVQFGPVKNINMPKDRVLKTHQGYGFVEFKNPLDAKYTE 75
Query: 94 KIMNMIKLYG----------KP---------IRVNKASS--HQKNLDVGANIFIGNLDPE 132
I+ ++L+G KP VN S K +DVGA++F+ NL+P
Sbjct: 76 DILRGVRLHGKLLKLKKLESKPQTLQRQQIGTFVNSKSELLSDKYIDVGASVFVNNLNPL 135
Query: 133 VDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
+DEK L +TFS FG I++ +PEI
Sbjct: 136 IDEKFLMNTFSKFGTIIK--------------------------------------EPEI 157
Query: 193 MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK----KDSKGDRHG 248
RD + GNS GF F+ + FE SD I+ ++ L N IS+ YAFK ++ K RHG
Sbjct: 158 KRDHE-GNSMGFGFVTFGDFETSDLVIEKLNNTILMNSKISLDYAFKNELGENGKKVRHG 216
Query: 249 SAAER 253
AER
Sbjct: 217 DEAER 221
>gi|448523344|ref|XP_003868880.1| Hsh49 protein [Candida orthopsilosis Co 90-125]
gi|380353220|emb|CCG25976.1| Hsh49 protein [Candida orthopsilosis]
Length = 248
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 122/245 (49%), Gaps = 64/245 (26%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+A++Y G +D + SE LM+ELFVQ GP+ N++MPKDRV +THQGYGF+EF DA Y
Sbjct: 16 NASLYFGNIDPQCSELLMYELFVQFGPIKNINMPKDRVLKTHQGYGFVEFKHALDAKYTE 75
Query: 94 KIMNMIKLYG----------KP-----------IRVNKASSHQKNLDVGANIFIGNLDPE 132
I+ ++LYG KP I + K +DVGA +F+ NL+
Sbjct: 76 DILRGVRLYGKLLKLKKLDSKPQAQQRQQIGTFINTKQELLSDKYIDVGAKLFVNNLNRL 135
Query: 133 VDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
+DE+ L +TFS FG +++ PEI
Sbjct: 136 IDERFLLNTFSKFGTVIK--------------------------------------QPEI 157
Query: 193 MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK----KDSKGDRHG 248
RD + GNS GF F+ + FE SD I+ ++ L N IS+ YAFK ++ K RHG
Sbjct: 158 KRDHE-GNSMGFGFVTFGDFETSDLVIEKLNNTILMNSKISLDYAFKSELGENGKKVRHG 216
Query: 249 SAAER 253
AER
Sbjct: 217 DEAER 221
>gi|123485827|ref|XP_001324580.1| spliceosomal protein [Trichomonas vaginalis G3]
gi|121907465|gb|EAY12357.1| spliceosomal protein, putative [Trichomonas vaginalis G3]
Length = 221
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 123/226 (54%), Gaps = 42/226 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
D T+++ + + V+E ++ ELF+Q GPVV V++P+DR+T GY F+EF E+D YA+
Sbjct: 11 DCTLFLCDISEHVTEEILTELFMQVGPVVFVNIPRDRITNRMNGYAFVEFRTEQDCMYAL 70
Query: 94 KIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
+M +KL+G P+++ N S LDVGA ++IGNL +V++ L TF FG +L
Sbjct: 71 SVMQGVKLFGVPLKLSANSTPSTGDELDVGAKLYIGNLSQDVNDGNLLQTFRQFGNVLH- 129
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
++ DP TG S G F+ Y S
Sbjct: 130 --------------------------------------ARVVVDPATGKSLGHGFVAYDS 151
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSK-GDRHGSAAERLLA 256
F+A+D + AM+G+Y +PI+VSYA+K +K G++HG +ER +A
Sbjct: 152 FDAADKAKKAMNGEYFGGQPITVSYAYKSGTKSGEKHGDRSERSVA 197
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%)
Query: 19 LSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGY 78
LS G+ D A +Y+G L V++ + + F Q G V++ + D T G+
Sbjct: 85 LSANSTPSTGDELDVGAKLYIGNLSQDVNDGNLLQTFRQFGNVLHARVVVDPATGKSLGH 144
Query: 79 GFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111
GF+ + + AD A K MN G+PI V+ A
Sbjct: 145 GFVAYDSFDAADKAKKAMNGEYFGGQPITVSYA 177
>gi|159163577|pdb|1X5T|A Chain A, Solution Structure Of The Second Rrm Domain In Splicing
Factor 3b
Length = 96
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/123 (60%), Positives = 84/123 (68%), Gaps = 38/123 (30%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGA 181
+ IFIGNLDPE+DEKLLYDTFSAFGVILQT
Sbjct: 6 SGIFIGNLDPEIDEKLLYDTFSAFGVILQT------------------------------ 35
Query: 182 NIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
P+IMRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKD
Sbjct: 36 --------PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKD 87
Query: 242 SKG 244
SKG
Sbjct: 88 SKG 90
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDADY 91
G + I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDA 63
Query: 92 AIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 64 AIEAMNGQYLCNRPITVSYA 83
>gi|149240013|ref|XP_001525882.1| hypothetical protein LELG_02440 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450005|gb|EDK44261.1| hypothetical protein LELG_02440 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 241
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 123/252 (48%), Gaps = 66/252 (26%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ +A++Y G LD + E LM+ELF Q GP+ N++MPKDRV++ HQGYGF+EF DA Y
Sbjct: 14 NSNASLYFGNLDPECLELLMYELFSQFGPIRNINMPKDRVSKMHQGYGFVEFKDARDAKY 73
Query: 92 AIKIMNMIKLYGKPIRVNKASS-----------------------HQKNLDVGANIFIGN 128
I+ ++LYGK +++ K S + + +DVGA ++I N
Sbjct: 74 TEDILRGVRLYGKLLKLKKLDSKPSTQYQSERSVGTYVTPKLDLLNDRYVDVGAKLYISN 133
Query: 129 LDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNL 188
L+P +DEK L TF FG +++ P
Sbjct: 134 LNPLIDEKFLLQTFLNFGTVIKQP------------------------------------ 157
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK----KDSKG 244
++R G S G FI +A FE SD I+ M+ L N IS++YAFK K K
Sbjct: 158 ---VIRRDLEGKSMGSGFITFADFETSDEVIEKMNNTILMNSKISLAYAFKEGATKGGKK 214
Query: 245 DRHGSAAERLLA 256
RHG AER+LA
Sbjct: 215 IRHGDKAERILA 226
>gi|320582964|gb|EFW97181.1| RRM 1 multi-domain protein [Ogataea parapolymorpha DL-1]
Length = 981
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 116/230 (50%), Gaps = 48/230 (20%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
+ D + ++Y+G LD KV ETL++ELFVQ PV ++ +PKD+V + HQGYGF+EF +
Sbjct: 3 AKQNDKEVSLYLGNLDPKVDETLLYELFVQFAPVKSIRLPKDKVLRRHQGYGFVEFFNVK 62
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKNL-----DVGANIFIGNLDPEVDEKLLYDTF 142
D +Y + I + + LY K +RV K Q D+G +++GNLD VD + TF
Sbjct: 63 DCEYVLNICSGLSLYDKVLRVKKLIGGQTETPELDEDIGPVVYVGNLDKLVDSGSISATF 122
Query: 143 SAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSK 202
+ FG + P+++ G
Sbjct: 123 ANFGTFRKPPQVV------------------------------------------PGEKS 140
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
AFI Y FE+SD +I M+G+ + NRPI + YA+KKDSK ++HG E
Sbjct: 141 NHAFIYYTDFESSDEAIKEMNGKIIMNRPIKMDYAYKKDSK-EKHGDRTE 189
>gi|70935983|ref|XP_739002.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56515660|emb|CAH87238.1| hypothetical protein PC302382.00.0 [Plasmodium chabaudi chabaudi]
Length = 147
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 93/125 (74%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ +AT+Y+ LD +V E ++ ELF+Q G V NVH+P+D++ H GYGF+E+ E + +Y
Sbjct: 17 NNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGFHLGYGFVEYEYEYECEY 76
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
A K++NM +L+GKP+R NKA+ +K+ DVGAN+FIGNLD EV+EK+L+D FS+FG ++
Sbjct: 77 AGKVLNMTRLFGKPLRCNKATQDKKSFDVGANLFIGNLDTEVEEKMLFDIFSSFGQVISV 136
Query: 152 PKIMN 156
+ N
Sbjct: 137 KIVRN 141
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 28/99 (28%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVI--LQTP--------------------------K 153
A ++I NLD +VDE++L + F G + + P K
Sbjct: 20 ATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGFHLGYGFVEYEYEYECEYAGK 79
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
++NM +L+GKP+R NKA+ +K+ DVGAN+FIGNLD E+
Sbjct: 80 VLNMTRLFGKPLRCNKATQDKKSFDVGANLFIGNLDTEV 118
>gi|254572433|ref|XP_002493326.1| hypothetical protein [Komagataella pastoris GS115]
gi|238033124|emb|CAY71147.1| hypothetical protein PAS_chr3_1252 [Komagataella pastoris GS115]
gi|328352657|emb|CCA39055.1| Polyadenylate-binding protein 1-B [Komagataella pastoris CBS 7435]
Length = 215
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 116/233 (49%), Gaps = 42/233 (18%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ D T+YVG L +V E +++EL VQ P+ + +PKDRV + H GY F+E +Y
Sbjct: 2 NNDITLYVGNLAPEVDEKIIYELLVQIAPIRKLKLPKDRVLRKHLGYCFVELDNPTSCEY 61
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNLDV------GANIFIGNLDPEVDEKLLYDTFSAF 145
A K++N + +Y +PI+V ++ ++N + G +F+GNLD VDEK L +
Sbjct: 62 AEKLLNGLYIYNRPIKVKRSIVDKQNKLITEDNVLGTKLFLGNLDRLVDEKYLVGLMKNY 121
Query: 146 GVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFA 205
GV Q K PEI RD TG S G+
Sbjct: 122 GVHDQLLK-----------------------------------PPEIKRDIHTGESMGYG 146
Query: 206 FINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
+N+ FE D I ++GQ+L N+ + V YA K + KG HG +ERLLA++
Sbjct: 147 ILNFRDFETCDLVIKKLNGQFLMNKKVKVEYAKKSNGKG-YHGDKSERLLASK 198
>gi|363755690|ref|XP_003648060.1| hypothetical protein Ecym_7420 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892096|gb|AET41243.1| hypothetical protein Ecym_7420 [Eremothecium cymbalariae
DBVPG#7215]
Length = 204
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 118/224 (52%), Gaps = 44/224 (19%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
TIYVG LD +V++ ++ELFVQ GPV + KD++TQ +QG+ F+EF D ++AIK
Sbjct: 8 TIYVGNLDGQVTKEHLYELFVQMGPVYRIRYRKDKITQEYQGFAFVEFYTNSDCEFAIKS 67
Query: 96 M-NMIKLYGKPIRVNKA--SSHQKN-LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
+ N + L+GK ++V + ++H L GA +F+ NLD VD + L F FG +++
Sbjct: 68 LNNSVSLFGKILKVRRTLENTHYGGPLISGAKLFVKNLDDSVDFQQLQKLFGKFGPLVKQ 127
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
P+I + KN G L A+I Y++
Sbjct: 128 PEIFTL-----------------KN---------GTLKC--------------AYIYYST 147
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLL 255
F+ SD ++ ++ Q L NR IS+ YAFK + GD+HG ERLL
Sbjct: 148 FKHSDEALQKLNKQILANRVISIDYAFKDGNSGDKHGDEIERLL 191
>gi|45185171|ref|NP_982888.1| ABL059Wp [Ashbya gossypii ATCC 10895]
gi|44980807|gb|AAS50712.1| ABL059Wp [Ashbya gossypii ATCC 10895]
gi|374106091|gb|AEY95001.1| FABL059Wp [Ashbya gossypii FDAG1]
Length = 204
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 44/228 (19%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ + T+YVG LD +VS+ L++ELFVQ PV + PKD+V Q HQG+ F+E E D D+
Sbjct: 4 NTECTVYVGNLDPQVSKELLYELFVQVAPVSRIRYPKDKVKQEHQGFAFVELFSEADCDF 63
Query: 92 AIKIM-NMIKLYGKPIRVNKASSHQKN---LDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
AIK + N + L+GK ++V + + KN + A +F+ NLD +D L F FG
Sbjct: 64 AIKSLNNTVSLFGKVLKVRRTLENAKNSAPVFARAKLFVKNLDSTIDAVQLQKLFGKFGP 123
Query: 148 ILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFI 207
+ + P++ L +R A++
Sbjct: 124 LAKPPQLFT---LKDGALRC-------------------------------------AYV 143
Query: 208 NYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLL 255
+ +F SD +++ ++ Q + N+ IS+ YAFK+ G++HG ERLL
Sbjct: 144 YFTTFRHSDEALEKLNNQIVANQIISIDYAFKEGKAGEKHGDPVERLL 191
>gi|161899049|ref|XP_001712751.1| mRNA splicing factor 3b4 [Bigelowiella natans]
gi|75756244|gb|ABA27139.1| mRNA splicing factor 3b4 [Bigelowiella natans]
Length = 208
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 118/228 (51%), Gaps = 40/228 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ ++ LD KV+E ++WELF+Q+GP+ ++ +P+D ++ H GY FIE+ E DA+Y I
Sbjct: 18 NTSLLATNLDLKVNEEILWELFLQTGPLRSIFLPRDPLSDRHFGYAFIEYETELDANYTI 77
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI++ ++L+ K I +NK SH+ + GA ++IGN++ DEKL+Y TFS+FG I++ P
Sbjct: 78 KILSPLRLFNKLISINKL-SHEGSYSTGACLYIGNINKNTDEKLIYSTFSSFGNIVKAPI 136
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+ NK K +A I Y S++
Sbjct: 137 L--------SKTFTNKG------------------------------VKYYALITYDSYD 158
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPL 261
++DA+I M+GQ I+V Y + S + S ER++ L
Sbjct: 159 SADAAIYNMNGQMFNGNVITVDYFYSASSTRIK-TSVVERMINENRKL 205
>gi|367009880|ref|XP_003679441.1| hypothetical protein TDEL_0B01010 [Torulaspora delbrueckii]
gi|359747099|emb|CCE90230.1| hypothetical protein TDEL_0B01010 [Torulaspora delbrueckii]
Length = 210
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 49/231 (21%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ T+YVG +D KV++ ++ELFVQ P+ N+ PKD+V Q HQG+ F+EF ED Y +
Sbjct: 9 ETTVYVGNIDPKVTKENLYELFVQVSPIANIRYPKDKVLQLHQGFAFVEFYTPEDCQYVV 68
Query: 94 KIM-NMIKLYGKPIRVNKA---SSHQKNLDVG----ANIFIGNLDPEVDEKLLYDTFSAF 145
+++ N ++LY + ++V KA SS +DV A +F+ NLDP +DE L F F
Sbjct: 69 QLLNNTVQLYDRFLKVRKANVQSSGSDTIDVTIQPIAKVFVKNLDPSIDEPHLSRLFGKF 128
Query: 146 GVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFA 205
G + + P+I + + A
Sbjct: 129 GPLAKGPEIFYL----------------------------------------SDGQLRCA 148
Query: 206 FINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD-RHGSAAERLL 255
+I + +++ SD ++ ++GQ + N+ ++V YAFK++ KG+ ++G +RLL
Sbjct: 149 YIYFKNYDHSDLALATLNGQLVVNKKVTVDYAFKENGKGNAKYGEDVDRLL 199
>gi|6324895|ref|NP_014964.1| Hsh49p [Saccharomyces cerevisiae S288c]
gi|2500588|sp|Q99181.1|HSH49_YEAST RecName: Full=Protein HSH49
gi|940850|emb|CAA62174.1| orf 06142 [Saccharomyces cerevisiae]
gi|1420700|emb|CAA99639.1| HSH49 [Saccharomyces cerevisiae]
gi|45270764|gb|AAS56763.1| YOR319W [Saccharomyces cerevisiae]
gi|151945399|gb|EDN63642.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190407618|gb|EDV10885.1| protein HSH49 [Saccharomyces cerevisiae RM11-1a]
gi|207340889|gb|EDZ69099.1| YOR319Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272549|gb|EEU07528.1| Hsh49p [Saccharomyces cerevisiae JAY291]
gi|259149795|emb|CAY86599.1| Hsh49p [Saccharomyces cerevisiae EC1118]
gi|285815190|tpg|DAA11083.1| TPA: Hsh49p [Saccharomyces cerevisiae S288c]
gi|323303013|gb|EGA56817.1| Hsh49p [Saccharomyces cerevisiae FostersB]
gi|323307266|gb|EGA60547.1| Hsh49p [Saccharomyces cerevisiae FostersO]
gi|323331441|gb|EGA72857.1| Hsh49p [Saccharomyces cerevisiae AWRI796]
gi|323335366|gb|EGA76653.1| Hsh49p [Saccharomyces cerevisiae Vin13]
gi|323346364|gb|EGA80653.1| Hsh49p [Saccharomyces cerevisiae Lalvin QA23]
gi|365762976|gb|EHN04508.1| Hsh49p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296647|gb|EIW07749.1| Hsh49p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 213
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 121/239 (50%), Gaps = 53/239 (22%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
S D T+YVG +D ++++ ++ELF+Q PV+ + PKD+V Q +QGY FIEF + DA
Sbjct: 4 SADSGNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDA 63
Query: 90 DYAIKIM-NMIKLYGKPIRVNKASSHQKNLDVGANI-----------FIGNLDPEVDEKL 137
YAIKIM N ++LY + I+V + ++ ++ +NI FI NL +D
Sbjct: 64 QYAIKIMNNTVRLYDRLIKVRQVTNSTGTTNLPSNISKDMILPIAKLFIKNLADSIDSDQ 123
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L F+ FG +++ P+I ++ N
Sbjct: 124 LVKIFNKFGKLIREPEIF----------------------------YLSN---------- 145
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD-RHGSAAERLL 255
G K A++ + FE +D +I +++ Q + N I+V YAFK++ KG+ ++G +RLL
Sbjct: 146 -GKLKC-AYVYFEDFEKADLAIKSLNNQLVANNRITVDYAFKENGKGNAKYGDDVDRLL 202
>gi|401839791|gb|EJT42839.1| HSH49-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 213
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 122/239 (51%), Gaps = 53/239 (22%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
S D D+T+YVG +D ++++ ++ELF+Q PV+ + PKD+V QT+QGY FIEF +EDA
Sbjct: 4 STDSDSTVYVGNIDPRITKDQLYELFIQINPVLRIKYPKDKVLQTYQGYAFIEFYNKEDA 63
Query: 90 DYAIKIM-NMIKLYGKPIRV----------NKASSHQKNLDV-GANIFIGNLDPEVDEKL 137
+Y I+IM N +KLY + I+V N +S++ K++ + A +F+ NL +D
Sbjct: 64 EYVIQIMNNTVKLYDRLIKVRQVTNSVGTANLSSNNSKDIALPIAKLFVKNLADSIDIDQ 123
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L F FG + P+I H N G L
Sbjct: 124 LAKIFGKFGKTISKPEIF-----------------HLSN---------GKLKC------- 150
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD-RHGSAAERLL 255
A + + FE +D +I +++ Q + N I++ YAFK++ K ++G+ +RLL
Sbjct: 151 -------ACVYFEDFEKADLAIKSLNNQLVANSRITIDYAFKENGKASTKYGNEVDRLL 202
>gi|365758210|gb|EHN00063.1| Hsh49p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 213
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 53/239 (22%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
S D D+T+YVG +D ++++ ++ELF+Q PV+ + PKD+V QT+QGY FIEF +EDA
Sbjct: 4 STDSDSTVYVGNIDPRITKGQLYELFIQINPVLRIKYPKDKVLQTYQGYAFIEFYNKEDA 63
Query: 90 DYAIKIM-NMIKLYGKPIRVNKASSHQKNLDVGAN-----------IFIGNLDPEVDEKL 137
+Y I+IM N +KLY + I+V + +S + +N +F+ NL +D
Sbjct: 64 EYVIQIMNNTVKLYDRLIKVRQVTSSVGTASLSSNNSKDIALPIAKLFVKNLADSIDIDQ 123
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L F FG + P+I H N G L
Sbjct: 124 LAKIFGKFGKTISKPEIF-----------------HLSN---------GKLKC------- 150
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD-RHGSAAERLL 255
A + + FE +D +I +++ Q + N I++ YAFK++ K ++G+ +RLL
Sbjct: 151 -------ACVYFEDFEKADLAIKSLNNQLVANNRITIDYAFKENGKASTKYGNEVDRLL 202
>gi|349581469|dbj|GAA26627.1| K7_Hsh49p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 213
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 121/239 (50%), Gaps = 53/239 (22%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
S D T+YVG +D ++++ ++ELF+Q PV+ + PKD+V Q +QGY FIEF + DA
Sbjct: 4 SADSGNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDA 63
Query: 90 DYAIKIM-NMIKLYGKPIRVNKASSHQKNLDVGANI-----------FIGNLDPEVDEKL 137
YAIKIM N ++LY + I+V + ++ ++ +NI FI N+ +D
Sbjct: 64 QYAIKIMNNTVRLYDRLIKVRQVTNSTGTTNLPSNISKDMILPIAKLFIKNVADSIDSDQ 123
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L F+ FG +++ P+I ++ N
Sbjct: 124 LVKIFNKFGKLIREPEIF----------------------------YLSN---------- 145
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD-RHGSAAERLL 255
G K A++ + FE +D +I +++ Q + N I+V YAFK++ KG+ ++G +RLL
Sbjct: 146 -GKLKC-AYVYFEDFEKADLAIKSLNNQLVANNRITVDYAFKENGKGNAKYGDDVDRLL 202
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP TG SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-TGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKVIFVGRAQKK 269
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|395746019|ref|XP_003778375.1| PREDICTED: LOW QUALITY PROTEIN: protein FAM71D [Pongo abelii]
Length = 648
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/63 (87%), Positives = 60/63 (95%)
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
I+IMNMIKLYGKPIRVNKAS++ KNLDVGANIFIGNLD E+DEKLLYDTFS FGVILQTP
Sbjct: 52 IQIMNMIKLYGKPIRVNKASANNKNLDVGANIFIGNLDTEIDEKLLYDTFSTFGVILQTP 111
Query: 153 KIM 155
KI+
Sbjct: 112 KIV 114
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/40 (87%), Positives = 38/40 (95%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
+IMNMIKLYGKPIRVNKAS++ KNLDVGANIFIGNLD EI
Sbjct: 53 QIMNMIKLYGKPIRVNKASANNKNLDVGANIFIGNLDTEI 92
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 127/258 (49%), Gaps = 54/258 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE-----------------IMRDPDTGNSKGFAFINYASFEASDASIDAM 222
N++I N E +MRDP +G SKGF F++Y E ++ +++ M
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 248
Query: 223 HGQYLCNRPISVSYAFKK 240
+G+ + + I V A KK
Sbjct: 249 NGKEISGKIIFVGRAQKK 266
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 117/277 (42%), Gaps = 68/277 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFS-- 143
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSKT 214
Query: 144 --------------AFGVIL--------QTPKIMNMIKLYGKPI---RVNKASSHQKNLD 178
FG + + + MN ++ GK I R K Q L
Sbjct: 215 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 274
Query: 179 V--------------GANIFIGNLDPEI----MRDP--------------DTGNSKGFAF 206
G N++I NLD I +R + G SKGF F
Sbjct: 275 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGF 334
Query: 207 INYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 371
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 33 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 92
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 93 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 151
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 152 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 211
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 212 FTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 270
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 271 EEMNGKEMSGKAIFVGRAQKK 291
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 119 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 176
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD+ L + FS F
Sbjct: 177 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQF 236
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 237 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 296
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 297 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 356
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 357 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 396
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 33 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 92
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 93 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 151
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 152 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 211
>gi|50290493|ref|XP_447678.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526988|emb|CAG60615.1| unnamed protein product [Candida glabrata]
Length = 211
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 123/239 (51%), Gaps = 54/239 (22%)
Query: 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDAD 90
D +ATIYVG +D KV++ L++ELF Q G V V PKD+++Q +QG+ FIEF DAD
Sbjct: 2 SDPEATIYVGNIDTKVTKELLYELFTQVGQVKKVKYPKDKISQEYQGFAFIEFFSTADAD 61
Query: 91 YAIKIM-NMIKLYGKPIRVNKA--------SSHQKNLDVG----ANIFIGNLDPEVDEKL 137
Y + +M N +KLY K +++ ++ ++ + LD A +F+ ++ V+ +
Sbjct: 62 YVLNVMNNNVKLYQKVLKIRRSNQAVQKDDANKKHELDASLLPVAKVFVKDIADTVEVRH 121
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L FS FG + +TP++ + N +V
Sbjct: 122 LTQLFSKFGPLAKTPEVFTV-----------------SNGEVRC---------------- 148
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD-RHGSAAERLL 255
AFI + ++ +D +I ++GQ++ N+ S+ YAFK++ + + R+G+ A+R+L
Sbjct: 149 -------AFIYFKFYDNADLAIQTLNGQFIMNKKASLEYAFKENGRKNLRYGTEADRIL 200
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 128/261 (49%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K+LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKVLYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP+ G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 117/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + ++++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKVLYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 120
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 121 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 180
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 181 FTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 239
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 240 EEMNGKEMSGKAIFVGRAQKK 260
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 88 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 145
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD+ L + FS F
Sbjct: 146 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQF 205
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 206 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 265
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 266 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 325
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 326 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 365
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 120
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 121 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 180
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKVIFVGRAQKK 269
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKVIFVGRAQKK 269
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEITGKVIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKVIFVGRAQKK 269
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKVIFVGRAQKK 269
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP+ G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKVIFVGRAQKK 269
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N E+D++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKVIFVGRAQKK 269
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKVIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP+ G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKVIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEITGKVIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP+ G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKVIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEITGKVIFVGRAQKK 269
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEITGKVIFVGRAQKK 269
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP+ G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP+ G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKVIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKVIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKVIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP+ G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKVIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKVIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKVIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKVIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKVIFVGRAQKK 269
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP+ G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKVIFVGRAQKK 269
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N E+D++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP+ G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ ++V + + ELF+Q G ++V + +D ++ +G+GF+ + EDA+ A++ M
Sbjct: 193 VYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDPNGKS-KGFGFVSYEKHEDANKAVEEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N ++ GK I R K Q L G N++I NLD +D++ L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I + K+M + G
Sbjct: 312 KEFSPFGSIT-SAKVM----------------------------------------LEDG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP+ G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP+ G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP+ G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP+ G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP+ G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP+ G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP+ G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEINGKIIFVGRAQKK 269
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP+ G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKVIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEIGGKVIFVGRAQKK 269
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L D FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKDLFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVMKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRD +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEMSGKAIFVGRAQKK 269
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD+ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEINGKIIFVGRAQKK 269
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|401623525|gb|EJS41622.1| hsh49p [Saccharomyces arboricola H-6]
Length = 213
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 117/239 (48%), Gaps = 53/239 (22%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
S + T+YVG +D ++++ ++ELF+Q P++ + PKD+V QT+QGY FIEF +EDA
Sbjct: 4 STNSGNTVYVGNIDPRITKEQLYELFIQINPILRIKYPKDKVLQTYQGYAFIEFYNKEDA 63
Query: 90 DYAIKIMN-MIKLYGKPIRVNKASSHQKNLDVGAN-----------IFIGNLDPEVDEKL 137
Y I IMN +KLY + I+V + ++ ++ +N +F+ NL VD
Sbjct: 64 QYVILIMNNTVKLYDRLIKVRQVTNSVGTTNLSSNSSKDISLPIAKLFVKNLAESVDIDQ 123
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L F+ FG + P+I H N G L
Sbjct: 124 LAKIFNKFGKTVNKPEIF-----------------HLSN---------GKLKC------- 150
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD-RHGSAAERLL 255
A++ + FE +D +I +++ Q + N ++V YAFK+ KG+ ++G +RLL
Sbjct: 151 -------AYVYFEDFEKADMAIKSLNNQLVANNRVTVDYAFKESGKGNIKYGGEVDRLL 202
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVMKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRD +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEMSGKAIFVGRAQKK 269
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD+ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|50305767|ref|XP_452844.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641977|emb|CAH01695.1| KLLA0C14388p [Kluyveromyces lactis]
Length = 203
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 119/230 (51%), Gaps = 48/230 (20%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQ---THQGYGFIEFMGEEDADYA 92
T+YVG LD +V+++L++ELFVQ+GP+ + PK++ + H Y FI+F+ +D DY
Sbjct: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVN-DDVDYV 62
Query: 93 IKIM-NMIKLYGKPIRVNKASSH--QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
K+ N + LYGKP++V +++ + DVGA +F+ NLD +D
Sbjct: 63 CKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESID--------------- 107
Query: 150 QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINY 209
P++ N+ K++GK +R PE+ G + A++ +
Sbjct: 108 -VPQLSNIFKIFGKLLR----------------------KPEVFY-LQNGTLRC-AYVWF 142
Query: 210 ASFEASDASIDAMHGQYLCNRPISVSYAFKKD-SKGDRHGSAAERLLAAQ 258
+F+ SD ++ ++ L N+ I + YA+K D K +HG ERLL A+
Sbjct: 143 TTFKHSDEALQQLNETNLANKLIYIDYAYKDDMQKTAKHGDEIERLLDAE 192
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEINGKIIFVGRAQKK 269
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEINGKVIFVGRAQKK 269
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 28 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 87
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 88 TMNFDVMKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 146
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 147 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 206
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRD +G SKGF F++Y E ++ ++
Sbjct: 207 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHEDANKAV 265
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 266 EEMNGKEMSGKAIFVGRAQKK 286
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 114 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 171
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD+ L + FS F
Sbjct: 172 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQF 231
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 232 GKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 291
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 292 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKG 351
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 352 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 391
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEINGKIIFVGRAQKK 269
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 28 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 87
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 88 TMNFDVMKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 146
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 147 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 206
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRD +G SKGF F++Y E ++ ++
Sbjct: 207 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHEDANKAV 265
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 266 EEMNGKEMSGKAIFVGRAQKK 286
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 114 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 171
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD+ L + FS F
Sbjct: 172 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQF 231
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 232 GKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 291
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 292 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKG 351
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 352 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 391
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVMKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRD +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEMSGKAIFVGRAQKK 269
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD+ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRD +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEMSGKSIFVGRAQKK 269
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ ++V + + ELF Q G ++V + +D + +G+GF+ + EDA+ A++ M
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N ++ GK I R K Q L G N++I NLD +D++ L
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I + K+M + G
Sbjct: 312 KEFSPFGSIT-SAKVM----------------------------------------LEDG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRD +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEMSGKSIFVGRAQKK 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ ++V + + ELF Q G ++V + +D + +G+GF+ + EDA+ A++ M
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N ++ GK I R K Q L G N++I NLD +D++ L
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I + K+M + G
Sbjct: 312 KEFSPFGSIT-SAKVM----------------------------------------LEDG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|156836482|ref|XP_001642301.1| hypothetical protein Kpol_224p1 [Vanderwaltozyma polyspora DSM
70294]
gi|156112796|gb|EDO14443.1| hypothetical protein Kpol_224p1 [Vanderwaltozyma polyspora DSM
70294]
Length = 217
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 118/243 (48%), Gaps = 57/243 (23%)
Query: 30 SGDG----DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMG 85
SG G D ++YVG +D +++ L++ELFVQ P+ ++ PKD+V QTHQGY FI+F
Sbjct: 4 SGSGFKNPDLSVYVGNIDPSITKELLYELFVQISPIAKINYPKDKVLQTHQGYAFIDFYT 63
Query: 86 EEDADYAIKIM-NMIKLYGKPIRVNK-----ASSHQKNLDVG------ANIFIGNLDPEV 133
EEDA+YAI+ N ++L + ++V K +S NL A IF+ NLD V
Sbjct: 64 EEDANYAIQAFNNNVQLNNRVLKVRKTNNNISSKSSTNLSQATSVTPYAKIFVKNLDSSV 123
Query: 134 DEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIM 193
D L F FG + + +I H N ++
Sbjct: 124 DVAYLSKLFKKFGSLARESEIF-----------------HLSNGELRC------------ 154
Query: 194 RDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD-SKGDRHGSAAE 252
A++ + +E +D +I ++ GQ + N+ I++ YAFK++ K ++G +
Sbjct: 155 -----------AYVYFKDYEKADEAIKSLDGQLVTNKRINIEYAFKENGDKKAKYGEDVD 203
Query: 253 RLL 255
RLL
Sbjct: 204 RLL 206
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRD +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEMSGKSIFVGRAQKK 269
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ ++V + + ELF Q G ++V + +D + +G+GF+ + EDA+ A++ M
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N ++ GK I R K Q L G N++I NLD +D++ L
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I + K+M + G
Sbjct: 312 KEFSPFGSIT-SAKVM----------------------------------------LEDG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRD +G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEMSGKSIFVGRAQKK 269
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ ++V + + ELF Q G ++V + +D + +G+GF+ + EDA+ A++ M
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N ++ GK I R K Q L G N++I NLD +D++ L
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I + K+M + G
Sbjct: 312 KEFSPFGSIT-SAKVM----------------------------------------LEDG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|254584372|ref|XP_002497754.1| ZYRO0F12716p [Zygosaccharomyces rouxii]
gi|238940647|emb|CAR28821.1| ZYRO0F12716p [Zygosaccharomyces rouxii]
Length = 210
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 117/239 (48%), Gaps = 51/239 (21%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
+ + D +IYVG +D KV++ ++ELFVQ P+ + PKD+V Q HQGY F+EF E
Sbjct: 2 SSNSNRDTSIYVGNIDPKVTKAQLYELFVQISPIRRIRYPKDKVLQIHQGYAFVEFYSVE 61
Query: 88 DADYAIKIM-NMIKLYGKPIRVNKA-------SSHQKNLDV--GANIFIGNLDPEVDEKL 137
D Y +++M N++ LY + +R+ + S + K L + A +F+ N+D +D
Sbjct: 62 DVQYVLRVMNNVVSLYDRTLRIRRVNGPGTNNSVNAKELSLLPLAKVFVKNVDESIDNVH 121
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L F FG + P+I + SH G L
Sbjct: 122 LSKIFGKFGPLASLPEIFYL--------------SH------------GQLRC------- 148
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD-RHGSAAERLL 255
AF+ + + SDA+I ++ Q + NR I++ YA K++S+ + ++GS +RLL
Sbjct: 149 -------AFVYFRDYTHSDAAIKSLDNQLVVNRRINLDYAIKENSQQNSKYGSDVDRLL 200
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 131/280 (46%), Gaps = 58/280 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 51 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 110
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 111 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 170
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 171 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKAN 230
Query: 182 --NIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASDASI 219
NI+I N+DP++ RDP+ G S+GF F+NY++ E++ A++
Sbjct: 231 FTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPE-GKSRGFGFVNYSTHESAQAAV 289
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
D MH + + + + V A KK + + R A RL A
Sbjct: 290 DEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKA 329
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 104/242 (42%), Gaps = 41/242 (16%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IY+ +D V+E ++F Q G + + + +D ++ +G+GF+ + E A A+ M
Sbjct: 234 IYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKS-RGFGFVNYSTHESAQAAVDEM 292
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
+ ++ + + V +A H++ ++ G N+++ NL +VD++ L
Sbjct: 293 HDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 352
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNL----------- 188
+ F +G I + K+M P + +K +V
Sbjct: 353 ELFGPYGTIT-SAKVMRD----STPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKE 407
Query: 189 DPEIMRDPDT-------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
E +D G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD
Sbjct: 408 SDEEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKD 467
Query: 242 SK 243
+
Sbjct: 468 VR 469
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 127/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +G ++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+P+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARARE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E +RD D+G S+GF F+++ E + ++D
Sbjct: 190 FTNVYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDDSGKSRGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ + +PI V A KK
Sbjct: 250 EMNGKEMNGKPIYVGRAQKK 269
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D + E + ++F + G +++ + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDDSGKS-RGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N ++ GKPI R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKEMNGKPIYVGRAQKKVERQAELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I + K+M L G G
Sbjct: 312 KEFSPFGTIT-SAKVM----LEG------------------------------------G 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 120/260 (46%), Gaps = 53/260 (20%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG LD+ V+ET ++ +F Q G V +V + +D VT+ GYG++ + DA A++
Sbjct: 39 SLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAMEA 98
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTP-- 152
+N + GK IR+ + G NIFI NLD +D K L+DTF AFG IL
Sbjct: 99 LNYTPINGKTIRIMWSHRDPSTRKSGVGNIFIKNLDESIDNKALHDTFIAFGPILSCKIA 158
Query: 153 ------------------------KIMNMIKLYGKPIRVNKASSHQKNLDVG-----ANI 183
+ +N ++L GK + V K L N+
Sbjct: 159 HQDGRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLAATGETKFTNV 218
Query: 184 FIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASIDAMH 223
F+ NLDPE IM+D + SKGF F+N+ EA+ A+++ M+
Sbjct: 219 FVKNLDPEMAEEEIKEHFSTFGVITNVVIMKD-ENDKSKGFGFVNFDDPEAARAAVETMN 277
Query: 224 GQYLCNRPISVSYAFKKDSK 243
L +R I V A KK +
Sbjct: 278 NSQLGSRTIYVGRAQKKAER 297
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 115/280 (41%), Gaps = 72/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD+ + + + F+ GP+++ + +GYGF+ F +E A+ A
Sbjct: 124 GVGNIFIKNLDESIDNKALHDTFIAFGPILSCKIAHQ--DGRSKGYGFVHFETDEAANLA 181
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG-----ANIFIGNLDPEVDEKLLYDTFSAFGV 147
I+ +N ++L GK + V K L N+F+ NLDPE+ E+ + + FS FGV
Sbjct: 182 IEKVNGMQLVGKKVFVAKFVKRSDRLAATGETKFTNVFVKNLDPEMAEEEIKEHFSTFGV 241
Query: 148 ILQTP---------------------------KIMNMIKLYGKPIRVNKASSHQKNLDV- 179
I + MN +L + I V +A + +
Sbjct: 242 ITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVGRAQKKAEREQIL 301
Query: 180 ----------------GANIFIGNLD--------------------PEIMRDPDTGNSKG 203
GAN+++ NLD ++MRD + G SKG
Sbjct: 302 RRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLKQEFSRYGNITSAKVMRD-EKGISKG 360
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ + S E + + +G + +PI V+ A +K+ +
Sbjct: 361 FGFVCFTSPEEASRAATETNGLMINGKPIYVAMAQRKEIR 400
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 127/257 (49%), Gaps = 52/257 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD------------PDTGNSKGFAFINYASFEASDASIDAMH 223
N++I N +D E ++D ++G SKGF F+++ E + ++D M+
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 249
Query: 224 GQYLCNRPISVSYAFKK 240
G+ L + I V A KK
Sbjct: 250 GKELNGKQIYVGRAQKK 266
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 62/224 (27%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 248
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L G N+++ NLD +D++ L
Sbjct: 249 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 308
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 309 KEFSPFGTITSAKVMM-----------------------------------------EGG 327
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 328 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 371
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 127/257 (49%), Gaps = 52/257 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD------------PDTGNSKGFAFINYASFEASDASIDAMH 223
N++I N +D E ++D ++G SKGF F+++ E + ++D M+
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 249
Query: 224 GQYLCNRPISVSYAFKK 240
G+ L + I V A KK
Sbjct: 250 GKELNGKQIYVGRAQKK 266
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 62/224 (27%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 248
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L G N+++ NLD +D++ L
Sbjct: 249 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 308
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 309 KEFSPFGTITSAKVMM-----------------------------------------EGG 327
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 328 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 371
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 127/257 (49%), Gaps = 52/257 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD------------PDTGNSKGFAFINYASFEASDASIDAMH 223
N++I N +D E ++D ++G SKGF F+++ E + ++D M+
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 249
Query: 224 GQYLCNRPISVSYAFKK 240
G+ L + I V A KK
Sbjct: 250 GKELNGKQIYVGRAQKK 266
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 62/224 (27%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 248
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L G N+++ NLD +D++ L
Sbjct: 249 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 308
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 309 KEFSPFGTITSAKVMM-----------------------------------------EGG 327
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 328 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 371
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 126/264 (47%), Gaps = 57/264 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E++++E F +GP++++ + +D VTQ GY ++ F A++ +
Sbjct: 45 ASLYVGDLHHDVTESMLYEKFSPAGPILSIRVCRDSVTQHSLGYAYVNFQHRAHAEWVLA 104
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN+ + G PIR+ ++ Q+ VG N+F+ NL+ +D K LYDTFS FG IL
Sbjct: 105 TMNLDVIKGNPIRIMWSQRDPGQRKRGVG-NVFVKNLEKSIDNKALYDTFSTFGRILSCK 163
Query: 153 KI--------------------------MNMIKLYGKPIRVNKASSHQKN---LDVGA-- 181
I MN + L + V + S ++ L V A
Sbjct: 164 VISDENGSKGYGFVHFETQESAGKAIEKMNGMLLNNLKVFVGRFKSRRERESELGVKAKD 223
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
NI+I N L ++M D D G SKGF F+++ S E + A++
Sbjct: 224 YTNIYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTD-DCGRSKGFGFVSFQSHEDAQAAV 282
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
D M+G+ L + I V A KK +
Sbjct: 283 DDMNGKQLNGKQIYVGRAQKKRER 306
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IY+ + + + + E+F + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 227 IYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTDDCGRS-KGFGFVSFQSHEDAQAAVDDM 285
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L G N++I NLD ++++ L
Sbjct: 286 NGKQLNGKQIYVGRAQKKRERQTELKRHFEQIKQNQHIRYQGVNLYIKNLDDTINDEHLR 345
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 346 KEFSPFGTITSAKVMM-----------------------------------------ENG 364
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S + + + M+G+ + ++P+ VS A +K+ +
Sbjct: 365 RSKGFGFVCFSSSKDAAKASREMNGKLVASKPLYVSLAQRKEER 408
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 126/264 (47%), Gaps = 57/264 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+P+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGRPLRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARARE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L +M D DTG SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTD-DTGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
D M+G+ L R + V A KK +
Sbjct: 249 DDMNGKELNGRQVYVGRAQKKGER 272
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ELF GP ++V + D T +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDD-TGKSKGFGFVSFERHEDAQKAVDDM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L G+ + R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KEFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 129/264 (48%), Gaps = 57/264 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L +VSE +++E F +GP++++ + +D +T+ GY ++ F DA+ A++
Sbjct: 11 ASLYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALE 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K L+DTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALFDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDEHGSKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D ++G SKGF F+N+ E + ++
Sbjct: 190 FTNVYIKNFGEDMDDLRLKRLFGKFGPSLSVKVMTD-ESGTSKGFGFVNFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ M+G+ L + I V A KK +
Sbjct: 249 EEMNGKELNGKKIYVGRAQKKGER 272
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + LF + GP ++V + D + T +G+GF+ F EDA A++ M
Sbjct: 193 VYIKNFGEDMDDLRLKRLFGKFGPSLSVKVMTDE-SGTSKGFGFVNFERHEDAQKAVEEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KEFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+KGF F+ ++S E + ++ M+G+ + +P+ ++ A +K+ +
Sbjct: 331 RNKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYIALAQRKEER 374
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 54/271 (19%)
Query: 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMG 85
G +G G ++YVG LD V+++ +++ F Q GPVV+V + +D T+ GYG++ F
Sbjct: 27 GATAAGFGTTSLYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTN 86
Query: 86 EEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSA 144
+DA AI+ +N I LYGKPIRV + GA NIFI NLD +D K L+DTFS
Sbjct: 87 PQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSV 146
Query: 145 FGVILQTPKIMN---MIKLYGKPIRVNKASSHQ------------KNLDVG--------- 180
FG I+ ++ K YG N+ S+ + K + VG
Sbjct: 147 FGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERD 206
Query: 181 --------ANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASF 212
N+++ NL +M+D D G SKGF F+N+ +
Sbjct: 207 STANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGD-GKSKGFGFVNFENA 265
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ + ++++++G ++ V A KK +
Sbjct: 266 DDAARAVESLNGHKFDDKEWYVGRAQKKSER 296
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 112/275 (40%), Gaps = 71/275 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV L + ++ + F + G + + + KD ++ +G+GF+ F +DA A++ +
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGDGKS-KGFGFVNFENADDAARAVESL 275
Query: 97 NMIKLYGKPIRVNKASS-----------HQKNLDVGA------NIFIGNLDPEVDEKLLY 139
N K K V +A +++NL A N+++ NLDP + ++ L
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 335
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ FS FG + ++MRDP+ G
Sbjct: 336 EIFSPFGTVTSC---------------------------------------KVMRDPN-G 355
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
SKG F+ +++ E + ++ + G+ + ++P+ V+ A +K+ DR ++ A
Sbjct: 356 TSKGSGFVAFSTPEEATEAMSQLSGKMIESKPLYVAIAQRKE---DRRAQFSQVRPVAMQ 412
Query: 260 PLSQADRP----------HQLFADAPPPAPLPPPP 284
P P Q+F PP +PP P
Sbjct: 413 PSVGPRMPVYPPGGPGIGQQMFYGQGPPTMIPPQP 447
>gi|302755232|ref|XP_002961040.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
gi|300171979|gb|EFJ38579.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
Length = 625
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 122/260 (46%), Gaps = 53/260 (20%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG LD+ V+ET ++ +F Q G V +V + +D VT+ GYG++ + DA A++
Sbjct: 38 SLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAMEA 97
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVIL----- 149
+N + GK IR+ + G NIFI NLD +D K L+DTF AFG IL
Sbjct: 98 LNYTPINGKTIRIMWSHRDPSTRKSGVGNIFIKNLDESIDNKALHDTFIAFGPILSCKIA 157
Query: 150 --------------QTPKIMNM-------IKLYGKPIRVNKASSHQKNLDVG-----ANI 183
+T + N+ ++L GK + V K L N+
Sbjct: 158 HQDGRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLAATGETKFTNV 217
Query: 184 FIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASIDAMH 223
F+ NLDPE IM+D + SKGF F+N+ EA+ A+++ M+
Sbjct: 218 FVKNLDPEMAEEEINEHFSTFGVITNVVIMKD-ENDKSKGFGFVNFDDPEAARAAVETMN 276
Query: 224 GQYLCNRPISVSYAFKKDSK 243
L +R I V A KK +
Sbjct: 277 NSQLGSRTIYVGRAQKKAER 296
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 116/288 (40%), Gaps = 61/288 (21%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++V LD +++E + E F G + NV + KD ++ +G+GF+ F E A A++ M
Sbjct: 217 VFVKNLDPEMAEEEINEHFSTFGVITNVVIMKDENDKS-KGFGFVNFDDPEAARAAVETM 275
Query: 97 NMIKLYGKPIRVNKASSHQKNLDV-----------------GANIFIGNLDPEVDEKLLY 139
N +L + I V +A + + GAN+++ NLD +D++ L
Sbjct: 276 NNSQLGSRTIYVGRAQKKAEREQILRRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLK 335
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS +G I ++MRD + G
Sbjct: 336 QEFSRYGNITSA---------------------------------------KVMRD-EKG 355
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
SKGF F+ + S E + + +G + +PI V+ A +K+ + + + ++
Sbjct: 356 ISKGFGFVCFTSPEEASRAATETNGLMINGKPIYVAMAQRKEIRQAQLQQQYAQRMSGLM 415
Query: 260 --PLSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPPSGLRASAL 305
P +Q + A PPA LP P +M P P G R L
Sbjct: 416 PPPGAQVAAAYPPVYYAAPPALLPQVPQRQGLMYQPVMRP-GWRTGPL 462
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A +YV LDD + + + + F + G + + + +D +G+GF+ F E+A A
Sbjct: 318 ANLYVKNLDDSIDDETLKQEFSRYGNITSAKVMRDE-KGISKGFGFVCFTSPEEASRAAT 376
Query: 95 IMNMIKLYGKPIRVNKASSHQ 115
N + + GKPI V A +
Sbjct: 377 ETNGLMINGKPIYVAMAQRKE 397
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 120/263 (45%), Gaps = 54/263 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ D + A++
Sbjct: 45 ASLYVGELDPTVTEAMIFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTADGERALE 104
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + G+P R+ + G NIFI NLD ++D K L+DTF AFG +L
Sbjct: 105 QLNYSLIKGRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFVAFGNVLSCKV 164
Query: 153 --------------------------KIMNMIKLYGKPIRVN---KASSHQKNLDVG--- 180
K +N + L K + V Q LD
Sbjct: 165 ATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGPHIPRKERQSKLDEMKAQ 224
Query: 181 -ANIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
N++I NLD E+ ++ D G SKGF F+NY S E + A++D
Sbjct: 225 FTNLYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDDEGRSKGFGFVNYESHEEAQAAVD 284
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
+H L + + V+ A KK +
Sbjct: 285 NLHDTDLKGKKLYVTRAQKKAER 307
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 118/283 (41%), Gaps = 75/283 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD+++ + + FV G V++ + D ++ +GYGF+ + E A+ A
Sbjct: 131 GQGNIFIKNLDEQIDNKALHDTFVAFGNVLSCKVATDEQGRS-KGYGFVHYETAEAAETA 189
Query: 93 IKIMNMIKLYGKPIRVNK---ASSHQKNLDVG----ANIFIGNLDPEVDEKLLYDTFSAF 145
IK +N + L K + V Q LD N++I NLD EV ++ + F+ +
Sbjct: 190 IKAVNGMLLNDKKVYVGPHIPRKERQSKLDEMKAQFTNLYIKNLDTEVTQEEFEELFNRY 249
Query: 146 GVILQTPKIMNM-----------------------------IKLYGKPIRVNKA------ 170
G + T I+ + L GK + V +A
Sbjct: 250 GSV--TSAIVQVDDEGRSKGFGFVNYESHEEAQAAVDNLHDTDLKGKKLYVTRAQKKAER 307
Query: 171 ------SSHQKNLDV-----GANIFIGNLDPEIMRDP-------------------DTGN 200
S Q ++ G N+++ NL+ ++ D + G+
Sbjct: 308 EEELRRSYEQAKMEKLSKYQGVNLYVKNLEDDVDDDKLRAEFEPFGTITSCKVMSDEKGS 367
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S + + +I M+ + + ++P+ VS A +++ +
Sbjct: 368 SKGFGFVCFSSPDEATKAIAEMNNKMIGSKPLYVSLAQRREVR 410
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 127/281 (45%), Gaps = 61/281 (21%)
Query: 21 QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGF 80
QT G + A++YVG LD V+E +++ELF G V ++ + +D VT+ GY +
Sbjct: 37 QTPTASGSTNAPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAY 96
Query: 81 IEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLY 139
+ + D + A++ +N + G+P R+ + G N+FI NLD +D K L+
Sbjct: 97 VNYNNTADGERALEELNYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDIAIDNKALH 156
Query: 140 DTFSAFGVILQTP--------------------------------KIMNMIKLY-----G 162
DTF+AFG IL ++N K+Y
Sbjct: 157 DTFAAFGNILSCKVAQDENGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVYVGHHIP 216
Query: 163 KPIRVNKASSHQKNLDVGANIFIGNLDPEI--------------------MRDPDTGNSK 202
K R +K + N N+++ N+DPE+ RD D+G S+
Sbjct: 217 KKERQSKFDEMKANF---TNVYVKNIDPEVSDDEFRTLFENFGQITSASLARDGDSGTSR 273
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
GF F+N++S EA+ A++DA+H L + + V A KK +
Sbjct: 274 GFGFVNFSSHEAAAAAVDALHETELKGQALFVGRAQKKHER 314
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 108/224 (48%), Gaps = 32/224 (14%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV +D +VS+ LF G + + + +D + T +G+GF+ F E A A+ +
Sbjct: 234 VYVKNIDPEVSDDEFRTLFENFGQITSASLARDGDSGTSRGFGFVNFSSHEAAAAAVDAL 293
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
+ +L G+ + V +A H++ ++ G N+++ NLD E+D++ L
Sbjct: 294 HETELKGQALFVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYVKNLDDEIDDERLR 353
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS +G I + K+M R + S +K+ G +G + E D G
Sbjct: 354 QEFSPYGTIT-SAKVM----------RDSLDSPKEKD---GEESKVGEPE-EKATDKKQG 398
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ +++ + + ++ M+ + + +P+ V+ A +KD +
Sbjct: 399 KSKGFGFVCFSNPDEASKAVAEMNQRMVNGKPLYVALAQRKDVR 442
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 127/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +DR T+ GY + F EDA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIF+ NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDRSIDSKTLYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNKASSHQ-KNLDVGA---- 181
+ MN + L + + V + S + + ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKE 189
Query: 182 --NIFIGNL----DPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I NL D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKDLNGKQIYVGRAQKK 269
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 117/290 (40%), Gaps = 81/290 (27%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I+V LD + +++ F G +++ + D +GYGF+ F +E+A+ A
Sbjct: 97 GVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERA 154
Query: 93 IKIMNMIKLYGKPIRVNKASSHQ-KNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S + + ++GA N++I NL ++D++ L D FS F
Sbjct: 155 IEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQT 274
Query: 176 NLD------------------------VGANIFIGNLDP----EIMRDP----------- 196
L G N+++ NLD E +R
Sbjct: 275 ELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 334
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 VTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 384
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ F +E A+ A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 176 NLDV--------------GANIFIGNLDP----EIMRDP--------------DTGNSKG 203
L G N+++ NLD E +R + G SKG
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ F +E A+ A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 176 NLDV--------------GANIFIGNLDP----EIMRDP--------------DTGNSKG 203
L G N+++ NLD E +R + G SKG
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ F +E A+ A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 176 NLDV--------------GANIFIGNLDP----EIMRDP--------------DTGNSKG 203
L G N+++ NLD E +R + G SKG
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGAALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ F +E A+ A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 215 GAALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 176 NLDV--------------GANIFIGNLDP----EIMRDP--------------DTGNSKG 203
L G N+++ NLD E +R + G SKG
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGINDERLRKEFSPFGTITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 126/262 (48%), Gaps = 59/262 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV----NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
MN + GKP+R+ S H+ + NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLHKSGV---GNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 151 TPKI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA-- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 128 CKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARA 187
Query: 182 ----NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDAS 218
N++I N +D E ++D ++G SKGF F+++ E + +
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 219 IDAMHGQYLCNRPISVSYAFKK 240
+D M+G+ L + I V A KK
Sbjct: 248 VDEMNGKELNGKQIYVGRAQKK 269
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ F +E A+ A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 176 NLDV--------------GANIFIGNLDP----EIMRDP--------------DTGNSKG 203
L G N+++ NLD E +R + G SKG
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 123/267 (46%), Gaps = 58/267 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ D + A++
Sbjct: 44 ASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 103
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + G+ R+ + G NIFI NLD ++D K L+DTF+AFG +L
Sbjct: 104 QLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKV 163
Query: 153 --------------------------KIMNMIKLYGKPIRV-----NKASSHQKNLDVG- 180
K +N + L K + V KASS ++ +
Sbjct: 164 ATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKASSRERQSKLEE 223
Query: 181 -----ANIFIGNLDPEIMRD-------------------PDTGNSKGFAFINYASFEASD 216
NI++ NLDPE+ +D + G S+GF F+N+ + E +
Sbjct: 224 MKAQFTNIYVKNLDPEVTQDDFVKLFEQFGNVTSAVIQTDEQGQSRGFGFVNFETHEEAQ 283
Query: 217 ASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++ +H R + VS A KK +
Sbjct: 284 KAVETLHDSEYHGRKLFVSRAQKKAER 310
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 124/286 (43%), Gaps = 77/286 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD+++ + + F G V++ + D ++ +GYGF+ + E A+ A
Sbjct: 130 GQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRS-KGYGFVHYETAEAAETA 188
Query: 93 IKIMNMIKLYGKPIRV-----NKASSHQKNLDVG------ANIFIGNLDPEVDEKLLYDT 141
IK +N + L K + V KASS ++ + NI++ NLDPEV +
Sbjct: 189 IKAVNGMLLNDKKVYVGHHISRKASSRERQSKLEEMKAQFTNIYVKNLDPEVTQDDFVKL 248
Query: 142 FSAFG----VILQTPK-----------------------IMNMIKLYGKPIRVNKA---- 170
F FG ++QT + ++ + +G+ + V++A
Sbjct: 249 FEQFGNVTSAVIQTDEQGQSRGFGFVNFETHEEAQKAVETLHDSEYHGRKLFVSRAQKKA 308
Query: 171 --------SSHQKNLDV-----GANIFIGNLDPEI--------------------MRDPD 197
S Q ++ G N++I NL+ +I MRD +
Sbjct: 309 EREEELRKSYEQAKVEKMSKYQGVNLYIKNLEDDIDDERLRQEFEPFGSITSAKVMRD-E 367
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S + + ++ M+ + + ++P+ VS A +++ +
Sbjct: 368 KGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQRREVR 413
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 128/260 (49%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D++T+ GY ++ + D++ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPRDSERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ F +E A+ A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 176 NLDV--------------GANIFIGNLDP----EIMRDP--------------DTGNSKG 203
L G N+++ NLD E +R + G SKG
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 126/262 (48%), Gaps = 59/262 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV----NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
MN + GKP+R+ S H+ + NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLHKSGV---GNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 151 TPKI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA-- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 128 CKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARA 187
Query: 182 ----NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDAS 218
N++I N +D E ++D ++G SKGF F+++ E + +
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 219 IDAMHGQYLCNRPISVSYAFKK 240
+D M+G+ L + I V A KK
Sbjct: 248 VDEMNGKELNGKQIYVGRAQKK 269
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ F +E A+ A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 176 NLDV--------------GANIFIGNLDP----EIMRDP--------------DTGNSKG 203
L G N+++ NLD E +R + G SKG
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 127/257 (49%), Gaps = 52/257 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD------------PDTGNSKGFAFINYASFEASDASIDAMH 223
N++I N +D E ++D ++G SKGF F+++ E + ++D M+
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 249
Query: 224 GQYLCNRPISVSYAFKK 240
G+ L + I V A KK
Sbjct: 250 GKELNGKQIYVGRAQKK 266
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 100/245 (40%), Gaps = 63/245 (25%)
Query: 16 LQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTH 75
+S + + E G + + +Y+ + + + + +LF GP ++V + D ++
Sbjct: 173 FKSRKEREAELGARAKEF-TNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKS- 227
Query: 76 QGYGFIEFMGEEDADYAIKIMNMIKLYGKPI---RVNKASSHQKNLDV------------ 120
+G+GF+ F EDA A+ MN +L GK I R K Q L
Sbjct: 228 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 287
Query: 121 --GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLD 178
G N+++ NLD +D++ L FS FG I +M
Sbjct: 288 YQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM----------------------- 324
Query: 179 VGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238
+ G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A
Sbjct: 325 ------------------EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 366
Query: 239 KKDSK 243
+K+ +
Sbjct: 367 RKEER 371
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 128/264 (48%), Gaps = 57/264 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M DP TG S+GF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDP-TGKSRGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ M+G L + + V A KK+ +
Sbjct: 249 EDMNGTELNGKTVFVGRAQKKNER 272
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 72 TMNFDVVKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 130
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 131 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKE 190
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M DP TG S+GF F++Y E ++ ++
Sbjct: 191 FTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAV 249
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G L + + V A KK
Sbjct: 250 EEMNGTELNGKTVFVGRAQKK 270
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D + + + ELF + G ++V + D T +G+GF+ + EDA+ A++ M
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTD-PTGKSRGFGFVSYEKHEDANKAVEEM 252
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L GK + R K Q L G N++I NLD +D++ L
Sbjct: 253 NGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 312
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I + K+M + G
Sbjct: 313 KEFSPFGSIT-SAKVM----------------------------------------LEEG 331
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 332 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 375
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P++ E +LY+ FS G +L Q P
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 72 TMNFDVVKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 130
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + +A+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 131 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKE 190
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 --------------------------KIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
K MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D ++G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ L + I V A KK
Sbjct: 249 DEMNGKELNGKQIYVGRAQKK 269
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ELF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KEFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 128/264 (48%), Gaps = 57/264 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M DP TG S+GF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDP-TGKSRGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ M+G L + + V A KK+ +
Sbjct: 249 EDMNGTELNGKTVFVGRAQKKNER 272
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +DR T+ GY + F EDA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIF+ NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDRSIDSKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNKASSHQ-KNLDVGA---- 181
+ MN + L + + V + S + + ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I NL + +M D ++G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNLGEDMDDERLQGLFSKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ L + I V A KK
Sbjct: 249 DEMNGKDLNGKQIYVGRAQKK 269
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 118/290 (40%), Gaps = 81/290 (27%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I+V LD + +++ F G +++ + D +GYGF+ F +E+A+ A
Sbjct: 97 GVGNIFVKNLDRSIDSKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERA 154
Query: 93 IKIMNMIKLYGKPIRVNKASSHQ-KNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S + + ++GA N++I NL ++D++ L FS F
Sbjct: 155 IEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQGLFSKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQT 274
Query: 176 NL-------------------DV-----GANIFIGNLDP----EIMRDP----------- 196
L D+ G N+++ NLD E +R
Sbjct: 275 ELKHKFGQMKQDKHKVEQVPQDISVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 334
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 VTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 384
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 52/180 (28%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL-------QTPK--------------------- 153
A++++G+L P+V E +LY+ FS+ G IL +T +
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKP+R+ ++ + VG NIF+ NLD I + D
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDRSIDSKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
D SKG+ F+++ + E ++ +I+ M+G +L +R + V FK S+ DR R
Sbjct: 130 VVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGR-FK--SRRDRQAELGAR 186
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 127/264 (48%), Gaps = 57/264 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ ++
Sbjct: 316 ASLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMLTRRSLGYAYVNFQQLADAERVLE 375
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN+ + GKP+R+ ++ + VG NIFI NL+ +D K LY TFSAFG IL
Sbjct: 376 TMNLDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLEKSIDNKALYKTFSAFGNILSCK 434
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
I MN ++L + V + S ++ L++GA
Sbjct: 435 VISDENGSKGYGFVHFENQQAADKAIEKMNGVRLNNLKVYVGRFKSRKERELELGARARE 494
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D ++G SKGF F++Y E + ++
Sbjct: 495 FTNVYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTD-ESGKSKGFGFVSYEKHEDAQRAV 553
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
D M+G+ + I V A KK +
Sbjct: 554 DEMNGKEFNGKRIYVGRAQKKGER 577
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 116/292 (39%), Gaps = 72/292 (24%)
Query: 16 LQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTH 75
+S + +LE G + + +Y+ + + + E+F + G ++V + D ++
Sbjct: 478 FKSRKERELELGARARE-FTNVYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTDESGKS- 535
Query: 76 QGYGFIEFMGEEDADYAIKIMNMIKLYGKPI---RVNKASSHQKNLDV------------ 120
+G+GF+ + EDA A+ MN + GK I R K Q L
Sbjct: 536 KGFGFVSYEKHEDAQRAVDEMNGKEFNGKRIYVGRAQKKGERQTELKRHFEQVKQERSSR 595
Query: 121 --GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLD 178
G N+++ NLD +D++ L FS FG I +M
Sbjct: 596 YQGVNLYVKNLDDSIDDERLRKAFSPFGTITSAKVMM----------------------- 632
Query: 179 VGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA- 237
+ G+S+GF F+ +++ E + ++ M+G+ + +P+ V+ A
Sbjct: 633 ------------------EGGHSRGFGFVCFSAPEEAAKAVSEMNGKLVATKPLYVALAQ 674
Query: 238 FKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFADAPPP------APLPPP 283
K+D + +R+ + Q + P+Q PPP PLP P
Sbjct: 675 RKRDRQVHLTNQYMQRMASFQAMSNPVFSPYQ-----PPPTSRYFMTPLPQP 721
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 124/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG-NVFIKNLDESIDNKALYDTFSAFGNILSCK 129
Query: 153 --------------------------KIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V S ++ L+ GA
Sbjct: 130 VVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D DTG S+GF F+NY + E + ++
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
M+G+ + R I V A K+
Sbjct: 249 SEMNGKEVNGRMIYVGRAQKR 269
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 119/285 (41%), Gaps = 71/285 (24%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G +++ LD+ + +++ F G +++ + D +GYGF+ F +E
Sbjct: 92 GLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A+ AI+ MN + L + + V S ++ L+ GA N++I N ++D+K L +
Sbjct: 150 AANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLRE 209
Query: 141 TFSAFGVILQTPKIM---------------------------NMIKLYGKPIRVNKASSH 173
FSAFG L +M N ++ G+ I V +A
Sbjct: 210 IFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Query: 174 -----------------QKNLDVGANIFIGNLDPEIMRD------------------PDT 198
+ N G N+++ NLD I D +
Sbjct: 270 IERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG 329
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M DP TG S+GF FI+Y E ++ ++
Sbjct: 190 FTNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDP-TGKSRGFGFISYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G L + + V A KK
Sbjct: 249 EDMNGTELNGKTVFVGRAQKK 269
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 97/224 (43%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D +++ + ELF + G ++V + D T +G+GFI + EDA+ A++ M
Sbjct: 193 VYIKNFGDDMNDERLKELFDKYGKTLSVKVMTD-PTGKSRGFGFISYEKHEDANKAVEDM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L GK + R K Q L G N++I NLD +D++ L
Sbjct: 252 NGTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I + K+M + G
Sbjct: 312 KEFSPFGSIT-SAKVM----------------------------------------LEEG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIK---------------------- 159
A++++G+L P++ E +LY+ FS G +L +MI
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 160 ------LYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
+ GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + +A+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D ++G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ L + I V A KK
Sbjct: 249 DEMNGKELNGKQIYVGRAQKK 269
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ELF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KEFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D ++G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ L + I V A KK
Sbjct: 249 DEMNGKELNGKQIYVGRAQKK 269
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ELF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KEFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDIKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KEFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRVVATKPLYVALAQRKEER 374
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D ++G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ L + I V A KK
Sbjct: 249 DEMNGKELNGKQIYVGRAQKK 269
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ELF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KEFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D ++G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ L + I V A KK
Sbjct: 249 DEMNGKELNGKQIYVGRAQKK 269
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ELF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KEFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D ++G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ L + I V A KK
Sbjct: 249 DEMNGKELNGKQIYVGRAQKK 269
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ELF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KEFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D ++G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ L + I V A KK
Sbjct: 249 DEMNGKELNGKQIYVGRAQKK 269
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ELF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KEFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D ++G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ L + I V A KK
Sbjct: 249 DEMNGKELNGKQIYVGRAQKK 269
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ELF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KEFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 129/265 (48%), Gaps = 55/265 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+P+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGRPLRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARARE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E +++ ++G SKGF F+++ E + ++D
Sbjct: 190 FTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGD 245
M+G+ L R + V A KK + +
Sbjct: 250 EMNGKELNGRQVYVGRAQKKGERQN 274
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ELF + GP +++ + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L G+ + R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KEFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ F +E A+ A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 176 NLDV--------------GANIFIGNLDP----EIMRDP--------------DTGNSKG 203
L G N+++ NLD E +R + G SKG
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M DP TG SKGF F+++ E ++ ++
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + + V A KK
Sbjct: 249 EEMNGKDINGKMVFVGRAQKK 269
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D + + + ELF + G ++V + D T +G+GF+ F EDA+ A++ M
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N + GK + R K Q L G N++I NLD +D++ L
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I + K+M + G
Sbjct: 312 KEFSPFGAIT-SAKVM----------------------------------------LEDG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + +A+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M DP TG SKGF F+++ E ++ ++
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + + V A KK
Sbjct: 249 EEMNGKDINGKMVFVGRAQKK 269
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D + + + ELF + G ++V + D T +G+GF+ F EDA+ A++ M
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N + GK + R K Q L G N++I NLD +D++ L
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I + K+M + G
Sbjct: 312 KEFSPFGSIT-SAKVM----------------------------------------LEDG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + +A+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ F +E A+ A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 176 NLDV--------------GANIFIGNLDP----EIMRDP--------------DTGNSKG 203
L G N+++ NLD E +R + G SKG
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 126/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L +E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ F +E A+ A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 176 NLDV--------------GANIFIGNLDP----EIMRDP--------------DTGNSKG 203
L G N+++ NLD E +R + G SKG
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 128/264 (48%), Gaps = 57/264 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M DP TG SKGF F+++ E ++ ++
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEEANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ M+G+ + + + V A KK +
Sbjct: 249 EEMNGKDINGKMLFVGRAQKKAER 272
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D + + + ELF + G ++V + D T +G+GF+ F E+A+ A++ M
Sbjct: 193 VYIKNFGDDMDDERLKELFGKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEEANKAVEEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N + GK + R K + Q L G N++I NLD +D++ L
Sbjct: 252 NGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I + K+M + G
Sbjct: 312 KEFSPFGSIT-SAKVM----------------------------------------LEDG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P++ E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + +A+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 127/263 (48%), Gaps = 55/263 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+P+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGRPLRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARARE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E +++ D G SKGF F+++ E + ++D
Sbjct: 190 FTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
M+G+ L R + V A KK +
Sbjct: 250 DMNGKELNGRQVYVGRAQKKGER 272
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ELF + GP +++ + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDGGKS-KGFGFVSFERHEDAQKAVDDM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L G+ + R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KEFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 124/263 (47%), Gaps = 54/263 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ D + A++
Sbjct: 7 ASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 66
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + G+ R+ + G NIFI NLD ++D K L+DTF+AFG +L
Sbjct: 67 QLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKV 126
Query: 153 --------------------------KIMNMIKLYGKPI-------RVNKASSHQKNLDV 179
K +N + L K + R + S ++ +
Sbjct: 127 ATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKERQSKIEEMKNQ 186
Query: 180 GANIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
NI++ N+DPE+ ++ D G S+GF F+N+ + E + A+++
Sbjct: 187 FTNIYVKNVDPEVTQEEFVQLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEEAHAAVE 246
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
A+H + R + V+ A KK +
Sbjct: 247 ALHDSDVKGRKLFVARAQKKAER 269
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 103/240 (42%), Gaps = 61/240 (25%)
Query: 21 QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGF 80
Q+K+E E + IYV +D +V++ +LF G + + + D ++ +G+GF
Sbjct: 177 QSKIE---EMKNQFTNIYVKNVDPEVTQEEFVQLFEPFGRITSAVLQVDDEGKS-RGFGF 232
Query: 81 IEFMGEEDADYAIKIMNMIKLYGKPI---RVNKASSHQKNLDV--------------GAN 123
+ F E+A A++ ++ + G+ + R K + ++ L G N
Sbjct: 233 VNFDTHEEAHAAVEALHDSDVKGRKLFVARAQKKAEREEELRRSYEQAKMEKMSKYQGVN 292
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
++I NL+ ++D++ L F FG I
Sbjct: 293 LYIKNLEDDIDDERLRGEFEPFGNITSA-------------------------------- 320
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++MRD + G SKGF F+ ++S + + ++ M+ + + +P+ VS A +++ +
Sbjct: 321 -------KVMRD-EKGISKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVR 372
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ F +E A+ A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 176 NLDV--------------GANIFIGNLDP----EIMRDP--------------DTGNSKG 203
L G N+++ NLD E +R + G SKG
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 127/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +DR+T+ GY + F EDA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIF+ NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDRSIDSKTLYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNKASSHQ-KNLDVGA---- 181
+ MN + L + V + S + + ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKE 189
Query: 182 --NIFIGNL----DPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I NL D E ++D ++G SKGF F+++ E + +++
Sbjct: 190 FTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVE 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKDLNGKQIYVGRAQKK 269
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 115/290 (39%), Gaps = 81/290 (27%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I+V LD + +++ F G +++ + D +GYGF+ F +E+A+ A
Sbjct: 97 GVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERA 154
Query: 93 IKIMNMIKLYGKPIRVNKASSHQ-KNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + V + S + + ++GA N++I NL ++D++ L D F F
Sbjct: 155 IEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFGRF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQT 274
Query: 176 NLD------------------------VGANIFIGNLDP----EIMRDP----------- 196
L G N+++ NLD E +R
Sbjct: 275 ELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 334
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 VTMEGGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALAQRKEER 384
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL----------------------------QTPK 153
A++++G+L P+V E +LY+ FS G IL +
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKP+R+ ++ + VG NIF+ NLD I + D
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDRSIDSKTLYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + E ++ +I+ M+G +L + + V + ++D + + A E
Sbjct: 130 VVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKE 189
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 127/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +DR+T+ GY + F EDA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIF+ NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDRSIDSKTLYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNKASSHQ-KNLDVGA---- 181
+ MN + L + V + S + + ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKE 189
Query: 182 --NIFIGNL----DPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I NL D E ++D ++G SKGF F+++ E + +++
Sbjct: 190 FTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVE 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKDLNGKQIYVGRAQKK 269
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 115/290 (39%), Gaps = 81/290 (27%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I+V LD + +++ F G +++ + D +GYGF+ F +E+A+ A
Sbjct: 97 GVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERA 154
Query: 93 IKIMNMIKLYGKPIRVNKASSHQ-KNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + V + S + + ++GA N++I NL ++D++ L D F F
Sbjct: 155 IEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFGRF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQT 274
Query: 176 NLD------------------------VGANIFIGNLDP----EIMRDP----------- 196
L G N+++ NLD E +R
Sbjct: 275 ELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 334
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 VTMEGGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALAQRKEER 384
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL----------------------------QTPK 153
A++++G+L P+V E +LY+ FS G IL +
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKP+R+ ++ + VG NIF+ NLD I + D
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDRSIDSKTLYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + E ++ +I+ M+G +L + + V + ++D + + A E
Sbjct: 130 VVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKE 189
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M DP +G SKGF F+++ E ++ ++
Sbjct: 190 FTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + + V A KK
Sbjct: 249 EEMNGKDINGKMVFVGRAQKK 269
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D + + + ELF + G ++V + D ++ +G+GF+ F EDA+ A++ M
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKS-KGFGFVSFEKHEDANKAVEEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N + GK + R K Q L G N++I NLD +D++ L
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I A + + + G
Sbjct: 312 KEFSPFGSI------------------------------TSAKVML-----------EDG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S + + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + +A+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M DP +G SKGF F+++ E ++ ++
Sbjct: 190 FTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + + V A KK
Sbjct: 249 EEMNGKDINGKMVFVGRAQKK 269
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D + + + ELF + G ++V + D ++ +G+GF+ F EDA+ A++ M
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKS-KGFGFVSFEKHEDANKAVEEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N + GK + R K Q L G N++I NLD +D++ L
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I A + + + G
Sbjct: 312 KEFSPFGSI------------------------------TSAKVML-----------EDG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S + + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + +A+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D ++G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ L + I V A K+
Sbjct: 249 DEMNGKELNGKQIYVGRAQKR 269
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ELF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI-------RVNKASSHQKNLDV----------GANIFIGNLDPEVDEKLLY 139
N +L GK I RV + + ++ + G N+++ NLD +D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKRVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KEFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M DP +G S+GF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDP-SGKSRGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G L + + V A KK
Sbjct: 249 EEMNGTELNGKTVFVGRAQKK 269
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D + + + E+F + G ++V + D ++ +G+GF+ + EDA+ A++ M
Sbjct: 193 VYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDPSGKS-RGFGFVSYEKHEDANKAVEEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L GK + R K Q L G N++I NLD +D++ L
Sbjct: 252 NGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I + K+M + G
Sbjct: 312 KEFSPFGSIT-SAKVM----------------------------------------LEEG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIK---------------------- 159
A++++G+L P++ E +LY+ FS G +L +MI
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 160 ------LYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
+ GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + +A+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 128/266 (48%), Gaps = 57/266 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D D+G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTD-DSGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD 245
D M+G+ + + I V A K + + +
Sbjct: 249 DDMNGKDMNGKAIYVGRAKKVERQTE 274
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + E+F + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDSGKS-KGFGFVSFERHEDAQKAVDDM 251
Query: 97 NMIKLYGKPIRVNKASSHQKNLDV----------------GANIFIGNLDPEVDEKLLYD 140
N + GK I V +A ++ ++ G N+++ NLD +D++ L
Sbjct: 252 NGKDMNGKAIYVGRAKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 311
Query: 141 TFSAFGVILQTPKIM 155
FS FG I +M
Sbjct: 312 EFSPFGTITSAKVMM 326
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKP+R+ ++ + VG NIFI NLD I + D
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +ID M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M DP +G SKGF F+++ E ++ ++
Sbjct: 190 FTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + + V A KK
Sbjct: 249 EEMNGKDINGKMVFVGRAQKK 269
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 104/245 (42%), Gaps = 60/245 (24%)
Query: 16 LQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTH 75
+S + + E G ++ + +Y+ D + + + ELF + G ++V + D ++
Sbjct: 173 FKSRKEREAELGAKAKEF-TNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKS- 230
Query: 76 QGYGFIEFMGEEDADYAIKIMNMIKLYGKPI---RVNKASSHQKNLDV------------ 120
+G+GF+ F EDA+ A++ MN + GK + R K Q L
Sbjct: 231 KGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 121 --GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLD 178
G N++I NLD +D++ L FS FG I
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSI------------------------------ 320
Query: 179 VGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238
A + + + G SKGF F+ ++S + + ++ M+G+ + ++P+ V+ A
Sbjct: 321 TSAKVML-----------EDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 239 KKDSK 243
+K+ +
Sbjct: 370 RKEER 374
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + +A+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 125/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D D G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ + + I V A KK
Sbjct: 249 DDMNGKDMNGKAIYVGRAQKK 269
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + E+F + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDNGKS-KGFGFVSFERHEDAQKAVDDM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N + GK I R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KEFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 125/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D + G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-EGGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ L + I V A KK
Sbjct: 249 DEMNGKELNGKQIYVGRAQKK 269
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ELF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDEGGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KEFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 126/264 (47%), Gaps = 57/264 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T++ GY ++ F DA ++
Sbjct: 2 ASLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLE 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN+ + GKP+R+ ++ + VG NIF+ NL+ +D + L+D FS FG IL
Sbjct: 62 TMNLDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLEKSIDNRALFDAFSGFGNILSCK 120
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN I L + V S ++ L++GA
Sbjct: 121 VVSDENGSKGYGFVHFETQESAEKAIEKMNGIVLKSLKVFVGHFKSRKERELELGARARE 180
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D + G SKGF F++YA+ E + ++
Sbjct: 181 FTNVYIKNFGEDMDNARLGEIFGRFGRALSVKVMTD-ERGRSKGFGFVSYATHEDAQRAV 239
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
D M+G+ L R I V A KK +
Sbjct: 240 DEMNGKELNGRRIYVGRAQKKGER 263
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 102/245 (41%), Gaps = 60/245 (24%)
Query: 16 LQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTH 75
+S + +LE G + + +Y+ + + + E+F + G ++V + D ++
Sbjct: 164 FKSRKERELELGARAREF-TNVYIKNFGEDMDNARLGEIFGRFGRALSVKVMTDERGRS- 221
Query: 76 QGYGFIEFMGEEDADYAIKIMNMIKLYGKPI---RVNKASSHQKNLDV------------ 120
+G+GF+ + EDA A+ MN +L G+ I R K Q L
Sbjct: 222 KGFGFVSYATHEDAQRAVDEMNGKELNGRRIYVGRAQKKGERQTELKRHFEQIKQDRVTR 281
Query: 121 --GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLD 178
G N+++ NLD +D++ L FS FG I +M
Sbjct: 282 YQGVNLYVKNLDDTIDDERLRTEFSPFGTITSAKVMM----------------------- 318
Query: 179 VGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238
+ G+S+GF F+ +++ + + ++ M+G+ + ++P+ V+ A
Sbjct: 319 ------------------EGGHSRGFGFVCFSAPDEAAKAVTEMNGKLVTSKPLYVALAQ 360
Query: 239 KKDSK 243
+K+ +
Sbjct: 361 RKEER 365
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 119/263 (45%), Gaps = 54/263 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD VSE +++E+F GPV ++ + +D VT+ GY ++ ++ D + A++
Sbjct: 49 ASLYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 108
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + G+ R+ + G NIFI NLD +D K L+DTF+AFG +L
Sbjct: 109 QLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKV 168
Query: 153 --------------------------KIMNMIKLYGKPIRVNKASS---HQKNLD----V 179
K +N + L K + V S Q LD
Sbjct: 169 ATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISKKERQSKLDEIRAQ 228
Query: 180 GANIFIGNLDPE-------------------IMRDPDTGNSKGFAFINYASFEASDASID 220
NI++ NLDPE +++ + GNSKGF F+N+ E + ++D
Sbjct: 229 FTNIYVKNLDPEVSLEEFTQLFEQFGNVTSAVIQTDEEGNSKGFGFVNFEFHEEAQNAVD 288
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
+H R + VS A KK +
Sbjct: 289 GLHDTEYNGRKLFVSRAQKKAER 311
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 116/282 (41%), Gaps = 73/282 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD+ + + + F G V++ + D ++ +GYGF+ + E A+ A
Sbjct: 135 GQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDEQGRS-KGYGFVHYETAEAAETA 193
Query: 93 IKIMNMIKLYGKPIRVNKASS---HQKNLD----VGANIFIGNLDPEVDEKLLYDTFSAF 145
IK +N + L K + V S Q LD NI++ NLDPEV + F F
Sbjct: 194 IKAVNGMLLNDKKVYVGHHISKKERQSKLDEIRAQFTNIYVKNLDPEVSLEEFTQLFEQF 253
Query: 146 G----VILQTPKIMNM-----------------------IKLYGKPIRVNKASSHQKNLD 178
G ++QT + N + G+ + V++A + +
Sbjct: 254 GNVTSAVIQTDEEGNSKGFGFVNFEFHEEAQNAVDGLHDTEYNGRKLFVSRAQKKAEREE 313
Query: 179 -----------------VGANIFIGNLDPEI--------------------MRDPDTGNS 201
G N++I NLD EI MRD + G+S
Sbjct: 314 ELRKSYEHAKMEKMSKYQGVNLYIKNLDDEIDDERLRAEFEPFGTITSAKVMRD-EKGSS 372
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
KGF F+ ++S + + ++ M+ + + +P+ VS A +++ +
Sbjct: 373 KGFGFVCFSSPDEATKAVAEMNNKMIGAKPLYVSLAQRREVR 414
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 126/264 (47%), Gaps = 57/264 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+P+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L +M D D+G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
D M+G+ + + + V A KK +
Sbjct: 249 DEMNGKEMNGKQVYVGRAQKKGER 272
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 101/245 (41%), Gaps = 60/245 (24%)
Query: 16 LQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTH 75
+S + + E G + + +Y+ + + + + E+F + GP +++ + D ++
Sbjct: 173 FKSRKEREAEMGARAKEF-TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKS- 230
Query: 76 QGYGFIEFMGEEDADYAIKIMNMIKLYGKPI---RVNKASSHQKNLDV------------ 120
+G+GF+ F EDA A+ MN ++ GK + R K Q L
Sbjct: 231 KGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTR 290
Query: 121 --GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLD 178
G N+++ NLD +D++ L FS FG I +M
Sbjct: 291 YQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM----------------------- 327
Query: 179 VGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238
+ G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A
Sbjct: 328 ------------------EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 239 KKDSK 243
+K+ +
Sbjct: 370 RKEER 374
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + G+P+R+ ++ + VG NIFI NLD I + D
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKE 189
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 125/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+P+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D D G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ + + + V A KK
Sbjct: 249 DEMYGKDMNGKSMFVGRAQKK 269
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 115/288 (39%), Gaps = 75/288 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D +++ + E+F + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPIRVNKASS------------HQKNLDV-----GANIFIGNLDPEVDEKLLY 139
+ GK + V +A Q N D G N+++ NLD +D++ L
Sbjct: 252 YGKDMNGKSMFVGRAQKKVERQTELKRKFEQMNQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
F FG I +M + G
Sbjct: 312 KEFLPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + + + +A+
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVR 390
Query: 260 PLSQADRPHQLFADAPPP-----APLPPPP------PPINIMGLPPPP 296
+ P+Q PPP A +PP PP I L P P
Sbjct: 391 VPNPVINPYQ-----PPPSSYFMAAIPPAQNRAAYYPPGQIAQLRPSP 433
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + G+P+R+ ++ + VG NIFI NLD I + D
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +ID M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 137/292 (46%), Gaps = 56/292 (19%)
Query: 6 EIQAGISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVH 65
+IQ+G P +QS + GG+ G G ++YVG LD +V+E +++E+F GPV +V
Sbjct: 47 QIQSG--QPIVQSYAAAPQPLGGQGGQGPVSLYVGELDPQVTEAMLFEIFNMIGPVASVR 104
Query: 66 MPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANI 124
+ +D VT+ GY ++ ++ D + A+ +N ++ GKP R+ + G NI
Sbjct: 105 VCRDAVTRRSLGYAYVNYLNYNDGERALDQLNYSQIRGKPCRIMWSQRDPGLRKTGQGNI 164
Query: 125 FIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------------KIMNM 157
FI NLD +D K L+DTF+AFG +L K +N
Sbjct: 165 FIKNLDQGIDNKALHDTFAAFGTVLSCKVATDDSGLSKGYGFVHYDSNEAAEAAIKAVNG 224
Query: 158 IKLYGKPIRVNKASS---HQKNLDVG----ANIFIGNLDPE------------------- 191
+ L K + V + S Q +D N+++ NLD E
Sbjct: 225 MLLNDKKVFVGQHISRKERQSKIDEMKSHFTNLYVKNLDTEVGEEEFEGLFSQFGPITSA 284
Query: 192 IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++ + GNSKGF F+N+ + E + +++ + + + +P+ V A KK +
Sbjct: 285 VIQKDEEGNSKGFGFVNFENHEDAQRAVEELDNKEIHGKPVFVGRAQKKSER 336
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 76/293 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV LD +V E LF Q GP+ + + KD + +G+GF+ F EDA A++ +
Sbjct: 257 LYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKDEEGNS-KGFGFVNFENHEDAQRAVEEL 315
Query: 97 NMIKLYGKPI---RVNKASSHQKNLD--------------VGANIFIGNLDPEVDEKLLY 139
+ +++GKP+ R K S ++ L G+N++I NL+ +VD++ L
Sbjct: 316 DNKEIHGKPVFVGRAQKKSEREEELRKQYEQAKYEKAGKYQGSNLYIKNLEDDVDDEKLR 375
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
F FG I ++MRD + G
Sbjct: 376 AEFEPFGTITSC---------------------------------------KVMRD-EKG 395
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE------R 253
SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD + + S R
Sbjct: 396 TSKGFGFVCFSSPDEATRAMSEMNNKIVGTKPLYVALAQRKDVRKQQLESQIAQRNNQLR 455
Query: 254 LLAAQN----PLSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPP-PSGLR 301
L AAQ P A +Q A PP P +MG PP P P+ +R
Sbjct: 456 LAAAQGIPNMPYGAAPMFYQPAAAGYPPGQRP-------VMGYPPAPGPARMR 501
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T Y ++ F +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN + GKP+R+ ++ + VG NIF+ NLD ++ K LYDT SAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ K MN + L G+ + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L E+M D ++G SKGF F+++ E + ++
Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKFGPALSVELMTD-ESGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ L + I V A KK
Sbjct: 249 DEMNGKELNGKQIYVGRAQKK 269
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I+V LD ++ +++ G +++ ++ D +GYGF+ F E A+ A
Sbjct: 97 GVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
IK MN + L G+ + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 155 IKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 215 GPALSVELMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 176 NLDVG--------------ANIFIGNLDP----EIMRDP--------------DTGNSKG 203
L N+++ NLD E +R + G SKG
Sbjct: 275 ELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q K
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEIMRDP--------------- 196
MN + GKP+R+ ++ + VG NIF+ NLD I
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +I M+G L R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 126/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ Y ++ F +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALD 70
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG--ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ S H +L NIF+ NLD ++ K LYDT SAFG IL
Sbjct: 71 TMNFDVIKGKPVRI-MWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELSGKQIYVGRAQKK 269
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFEKHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDVG--------------ANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L N+++ NLD +D++ L
Sbjct: 252 NGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KAFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 125/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D D G S+GF F+++ E + ++
Sbjct: 190 FTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ L + I V A KK
Sbjct: 249 DDMNGKDLNGKAIFVGRAQKK 269
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 135/344 (39%), Gaps = 87/344 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ F +E A+ A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I MN + L + + V + S ++ ++GA N++I N ++D++ L + F +
Sbjct: 155 IDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQY 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN L GK I R K Q
Sbjct: 215 GAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQT 274
Query: 176 NLDV--------------GANIFIGNLDP----EIMRDPDT--------------GNSKG 203
L G N+++ NLD E +R T G SKG
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + + + +A+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPNP 394
Query: 264 ADRPHQLFADAPPP-----APLPPPP------PPINIMGLPPPP 296
P+Q PPP A +PP PP I L P P
Sbjct: 395 VINPYQ-----PPPSSYFMAAIPPAQNRAAYYPPGQIAQLRPSP 433
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKP+R+ ++ + VG NIFI NLD I + D
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +ID M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M DP +G SKGF F+++ E ++ ++
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANQAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + + V A KK
Sbjct: 249 EDMNGKDINGKMVFVGRAQKK 269
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D + + + ELF + G ++V + D ++ +G+GF+ F EDA+ A++ M
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPSGKS-KGFGFVSFEKHEDANQAVEDM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N + GK + R K Q L G N++I NLD +D++ L
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I + K+M + G
Sbjct: 312 KEFSPFGSIT-SAKVM----------------------------------------LEEG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + +A+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 124/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E ++++ F +GP+V++ + +D +T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITRRSLGYAYINFQQPADAECALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG NIFI N+D +D K LYDTFSAFG IL
Sbjct: 71 TMNYDVIKGRPIRIMWSQRDPALRKSGVG-NIFIKNIDDSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVG----- 180
+ MN + L + + V S ++ ++ G
Sbjct: 130 VVCDERGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGTKVMK 189
Query: 181 -ANIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
NI+I N L +MRD + G S+GF F+NYA E + ++
Sbjct: 190 FTNIYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRD-EKGRSRGFGFVNYAHHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ + + I V A K+
Sbjct: 249 DEMNGKEMNGKIIYVGRAQKR 269
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 65/227 (28%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IY+ D +++ + E F G ++V + +D ++ +G+GF+ + EDA A+ M
Sbjct: 193 IYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRS-RGFGFVNYAHHEDAQKAVDEM 251
Query: 97 NMIKLYGKPIRVNKASSHQKNLDV--------------------GANIFIGNLDPEVDEK 136
N ++ GK I V +A QK L+ G N+++ NLD +D++
Sbjct: 252 NGKEMNGKIIYVGRA---QKRLERQGELKRKFDQLKQDRIQRYQGVNLYVKNLDDSIDDE 308
Query: 137 LLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196
L FS +G I + K+M
Sbjct: 309 RLRKEFSPYGTIT-SAKVMT---------------------------------------- 327
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +++ +
Sbjct: 328 EAGQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRREER 374
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 126/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ Y ++ F +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALD 70
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG--ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ S H +L NIF+ NLD ++ K LYDT SAFG IL
Sbjct: 71 TMNFDVIKGKPVRI-MWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELSGKQIYVGRAQKK 269
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFEKHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDVG--------------ANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L N+++ NLD ++D++ L
Sbjct: 252 NGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KAFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 125/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+P+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D D G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ + + + V A KK
Sbjct: 249 DEMNGKDMNGKSMFVGRAQKK 269
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 114/288 (39%), Gaps = 75/288 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D +++ + E+F + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N + GK + R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
F FG I +M + G
Sbjct: 312 KEFLPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + + + +A+
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVR 390
Query: 260 PLSQADRPHQLFADAPPP-----APLPPPP------PPINIMGLPPPP 296
+ P+Q PPP A +PP PP I L P P
Sbjct: 391 VPNPVINPYQ-----PPPSSYFMAAIPPAQNRAAYYPPGQIAQLRPSP 433
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 128/260 (49%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T Y ++ F +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN + GKP+R+ ++ + VG NIF+ NLD ++ K LYDT SAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ K MN + L G+ + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I+V LD ++ +++ G +++ ++ D +GYGF+ F E A+ A
Sbjct: 97 GVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
IK MN + L G+ + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 155 IKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 176 NLDVG--------------ANIFIGNL----DPEIMRDP--------------DTGNSKG 203
L N+++ NL D E +R + G SKG
Sbjct: 275 ELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q K
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEIMRDP--------------- 196
MN + GKP+R+ ++ + VG NIF+ NLD I
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +I M+G L R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 128/260 (49%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T Y ++ F +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN + GKP+R+ ++ + VG NIF+ NLD ++ K LYDT SAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ K MN + L G+ + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I+V LD ++ +++ G +++ ++ D +GYGF+ F E A+ A
Sbjct: 97 GVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
IK MN + L G+ + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 155 IKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 176 NLDVG--------------ANIFIGNL----DPEIMRDP--------------DTGNSKG 203
L N+++ NL D E +R + G SKG
Sbjct: 275 ELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q K
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEIMRDP--------------- 196
MN + GKP+R+ ++ + VG NIF+ NLD I
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +I M+G L R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 123/264 (46%), Gaps = 55/264 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD+ V+E +++ELF Q GPV ++ + +D VT+ GY ++ + D + A++
Sbjct: 59 ASLYVGELDESVTEAMLFELFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALE 118
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + +P R+ + G NIFI NLD +D K L+DTF+AFG IL
Sbjct: 119 ELNYTLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDAAIDNKALHDTFAAFGNILSCKV 178
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 179 AQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 238
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
NI+I NL + I RD +TG S+GF FIN+ + E++ ++
Sbjct: 239 YTNIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAV 298
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ ++ + + + + V A KK +
Sbjct: 299 EELNSREIHGQELYVGRAQKKHER 322
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 107/234 (45%), Gaps = 27/234 (11%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IY+ L V++ +LF Q G V + + +D+ T +G+GFI F E A A++ +
Sbjct: 242 IYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAVEEL 301
Query: 97 NMIKLYGKPIRVNKAS-SHQKNLD----------------VGANIFIGNLDPEVDEKLLY 139
N +++G+ + V +A H++ + VG N++I NLD EVD++ L
Sbjct: 302 NSREIHGQELYVGRAQKKHEREEELRKSYEAARQEKASKYVGVNLYIKNLDDEVDDEKLR 361
Query: 140 DTFSAFG------VILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP--- 190
+ F+ +G V+ +T + K K ++ G D
Sbjct: 362 ELFAPYGPITSAKVMRETASESDEEGKETKETEEVKEVKEEEEKPKVEGAAEGEADASGE 421
Query: 191 -EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ P G SKGF F+ +++ + + ++ M+ + + +P+ V+ A KK+ +
Sbjct: 422 KQAAARPKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVSGKPLYVAIAQKKEVR 475
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 125/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+P+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D D G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ + + + V A KK
Sbjct: 249 DEMNGKDMNGKSMFVGRAQKK 269
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 114/288 (39%), Gaps = 75/288 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D +++ + E+F + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N + GK + R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
F FG I +M + G
Sbjct: 312 KEFLPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + + + +A+
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVR 390
Query: 260 PLSQADRPHQLFADAPPP-----APLPPPP------PPINIMGLPPPP 296
+ P+Q PPP A +PP PP I L P P
Sbjct: 391 VPNPVINPYQ-----PPPSSYFMAAIPPAQNRAAYYPPGQIAQLSPSP 433
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 128/260 (49%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T Y ++ F +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN + GKP+R+ ++ + VG NIF+ NLD ++ K LYDT SAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ K MN + L G+ + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I+V LD ++ +++ G +++ ++ D +GYGF+ F E A+ A
Sbjct: 97 GVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
IK MN + L G+ + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 155 IKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 176 NLDVG--------------ANIFIGNL----DPEIMRDP--------------DTGNSKG 203
L N+++ NL D E +R + G SKG
Sbjct: 275 ELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q K
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEIMRDP--------------- 196
MN + GKP+R+ ++ + VG NIF+ NLD I
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +I M+G L R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 128/260 (49%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T Y ++ F +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN + GKP+R+ ++ + VG NIF+ NLD ++ K LYDT SAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ K MN + L G+ + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I+V LD ++ +++ G +++ ++ D +GYGF+ F E A+ A
Sbjct: 97 GVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
IK MN + L G+ + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 155 IKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 176 NLDVG--------------ANIFIGNL----DPEIMRDP--------------DTGNSKG 203
L N+++ NL D E +R + G SKG
Sbjct: 275 ELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q K
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEIMRDP--------------- 196
MN + GKP+R+ ++ + VG NIF+ NLD I
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +I M+G L R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 128/263 (48%), Gaps = 57/263 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D++T+ GY ++ + DA A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVG---ANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
+N + G+P+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGGGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 130
Query: 150 QTPKI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 131 SCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 190
Query: 182 -----NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDA 217
N++I N +D E ++D ++G SKGF F+++ E +
Sbjct: 191 AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 250
Query: 218 SIDAMHGQYLCNRPISVSYAFKK 240
++D M+G+ L + I V A KK
Sbjct: 251 AVDEMNGKELNGKQIYVGRAQKK 273
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 116/282 (41%), Gaps = 71/282 (25%)
Query: 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDAD 90
G G I++ LD + +++ F G +++ + D +GYGF+ F +E A+
Sbjct: 99 GGGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAE 156
Query: 91 YAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFS 143
AI+ MN + L + + V + S ++ ++GA N++I N ++D++ L D F
Sbjct: 157 RAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG 216
Query: 144 AFGVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSH 173
FG L + MN +L GK I R K
Sbjct: 217 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 276
Query: 174 QKNLDV--------------GANIFIGNLDP----EIMRDP--------------DTGNS 201
Q L G N+++ NLD E +R + G S
Sbjct: 277 QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS 336
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
KGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 337 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 378
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 126/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ Y ++ F +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALD 70
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG--ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ S H +L NIF+ NLD ++ K LYDT SAFG IL
Sbjct: 71 TMNFDVIKGKPVRI-MWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELSGKQIYVGRAQKK 269
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFEKHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDVG--------------ANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L N+++ NLD ++D++ L
Sbjct: 252 NGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KAFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
S+GF F+ ++S E + ++ M+G + +P+ VS A +K+ +
Sbjct: 331 RSRGFGFVCFSSPEEATKAVTEMNGIIVATKPLYVSLAHRKEER 374
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 129/260 (49%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F ++GP++++ + +D +T+ + Y ++ F +DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRYSSYAYVNFQHPKDAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIF+ NLD ++ K+LYDT SAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRRSGVG-NIFVKNLDKSINNKVLYDTASAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDVG--------------ANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L N+++ NLD ++D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KAFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 128/260 (49%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F ++GP++++ + +D +T+ Y ++ F +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAEHALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIF+ NLD ++ K+LYDT SAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRRSGVG-NIFVKNLDKSINNKVLYDTVSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAKVKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDVG--------------ANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L N+++ NLD ++D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KAFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEDR 374
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 135/286 (47%), Gaps = 61/286 (21%)
Query: 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
++ GG+ G +++YVG L V+E +++E F GP++++ + +D T+ GY +I F
Sbjct: 1 MQAGGQ-GYPLSSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINF 59
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDT 141
DA+ A+ MN + G+PIR+ ++ + VG N+FI NL+ +D K LYDT
Sbjct: 60 QQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVG-NVFIKNLEDSIDSKALYDT 118
Query: 142 FSAFGVIL--------------------------QTPKIMNMIKLYGKPIRVNKASSH-Q 174
FS FG IL Q MN + L + + V SH +
Sbjct: 119 FSTFGNILSCKVACDEHGSRGFGFVHFETNEAAQQAISTMNGMLLNDRKVFVGHFKSHRE 178
Query: 175 KNLDVGA------NIFIGN--------------------LDPEIMRDPDTGNSKGFAFIN 208
+ ++GA NI++ N L ++MRD ++G+S+GF F+N
Sbjct: 179 REAELGAQALAFTNIYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRD-NSGHSRGFGFVN 237
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
+ E + ++D M+G+ + + + V A K +G+R R
Sbjct: 238 FEKHEEAQKAVDHMNGKEVSGQQLYVGRAQK---RGERQNELKRRF 280
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 115/285 (40%), Gaps = 71/285 (24%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G +++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGVGNVFIKNLEDSIDSKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETNE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI MN + L + + V SH ++ ++GA NI++ NL ++DE+ L D
Sbjct: 150 AAQQAISTMNGMLLNDRKVFVGHFKSHREREAELGAQALAFTNIYVKNLHVDMDEQGLQD 209
Query: 141 TFSAFGVILQTPKI---------------------------MNMIKLYGKPI---RVNKA 170
F FG +L + MN ++ G+ + R K
Sbjct: 210 LFFEFGKMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKR 269
Query: 171 SSHQKNLDV--------------GANIFIGNLDPEIMRD------------------PDT 198
Q L G N+++ NLD I + +
Sbjct: 270 GERQNELKRRFEQMKQDRQTRYQGVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVMTEG 329
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G + +P+ V+ A +K+ +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVALAQRKEER 374
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 125/264 (47%), Gaps = 56/264 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++Y+G L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRRSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ + GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEFGAKARE 189
Query: 182 --NIFIGN----LDPEIMRD----------------PDTGNSKGFAFINYASFEASDASI 219
N++I N +D E +R+ + G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFERHEDAQKAV 249
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
D M+ + L R I V A KK +
Sbjct: 250 DEMNTKELNGRAIYVGRAQKKAER 273
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 94/225 (41%), Gaps = 60/225 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQS-GPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+Y+ D + + + E F Q G ++V + D ++ +G+GF+ F EDA A+
Sbjct: 193 VYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKS-KGFGFVSFERHEDAQKAVDE 251
Query: 96 MNMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLL 138
MN +L G+ I R K + Q L G N+++ NLD ++++ L
Sbjct: 252 MNTKELNGRAIYVGRAQKKAERQTELKRKFEMLKQERMSKYQGVNLYVKNLDDNINDERL 311
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
+ FS FG I +M +
Sbjct: 312 WKEFSPFGTITSAKVMM-----------------------------------------EE 330
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G S+GF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 331 GRSRGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEER 375
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 77/181 (42%), Gaps = 49/181 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A+++IG+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG NIFI NLD I + D
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRRSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
D SKG+ F+++ + EA+D +I+ M+G L +R + V + + G+ A
Sbjct: 130 VVCDENGSKGYGFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEFGAKARE 189
Query: 254 L 254
Sbjct: 190 F 190
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 126/264 (47%), Gaps = 54/264 (20%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G+ ++YVG LD V+++ +++ F Q G VV V + +D VT+ GYG++ F +DA A
Sbjct: 34 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
I+ +N I LYGKPIRV + GA NIFI NLD +D K L+DTFS+FG I+
Sbjct: 94 IQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSC 153
Query: 152 PKIMN---MIKLYGKPIRVNKASSHQ------------KNLDVG---------------- 180
++ K YG N+ S+ + K + VG
Sbjct: 154 KVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTK 213
Query: 181 -ANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N+++ NL +M+D + G SKGF F+N+ + + + ++
Sbjct: 214 FTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAV 272
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
++++G ++ V A KK +
Sbjct: 273 ESLNGHKFDDKEWYVGRAQKKSER 296
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 115/276 (41%), Gaps = 69/276 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV L + ++ + F + G + + + KD ++ +G+GF+ F +DA A++ +
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKS-KGFGFVNFENADDAARAVESL 275
Query: 97 NMIKLYGKPIRVNKASS-----------HQKNLDVGA------NIFIGNLDPEVDEKLLY 139
N K K V +A +++NL A N+++ NLDP + ++ L
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 335
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ FS FG + + ++MRDP+ G
Sbjct: 336 EIFSPFGTVTSS---------------------------------------KVMRDPN-G 355
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLL-AAQ 258
SKG F+ +A+ E + ++ + G+ + ++P+ V+ A +K+ + R + ++ A
Sbjct: 356 TSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAM 415
Query: 259 NPLSQADRP----------HQLFADAPPPAPLPPPP 284
P P Q+F PPA +PP P
Sbjct: 416 QPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQP 451
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 124/274 (45%), Gaps = 54/274 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF GPV ++ + +D VT+ GY ++ F ED + A+
Sbjct: 66 ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 125
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + G+P R+ + +G N+FI NLDP +D K L+DTFSAFG IL
Sbjct: 126 ELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKV 185
Query: 154 IMNMI---KLYG------------------------KPIRV-NKASSHQKNLDVGA---- 181
++ + K YG K + V + S ++ V A
Sbjct: 186 AVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKAN 245
Query: 182 --NIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
N++I NLD EI +GF F+NYA+ E + ++D
Sbjct: 246 FTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVD 305
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
++ + + + V A KK + + A E++
Sbjct: 306 ELNDKEYKGKKLYVGRAQKKHEREEELRKAYEQM 339
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 121/290 (41%), Gaps = 78/290 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ LD +++E +LF Q G + ++ + KD+ +G+GF+ + E A A+ +
Sbjct: 249 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDEL 307
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N + GK + V +A H++ ++ G N+FI NL EVD++ L
Sbjct: 308 NDKEYKGKKLYVGRAQKKHEREEELRKAYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 367
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FSAFG I +IM D + G
Sbjct: 368 AEFSAFGTITSA---------------------------------------KIMTD-EQG 387
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
SKGF F+ Y + E ++ ++ M+ + L +P+ V+ A +K+ + S E + A+N
Sbjct: 388 KSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVR----RSQLEAQIQARN 443
Query: 260 PLSQADRPHQLFADAPPPA-------PLP------PPPPPINIMGLPPPP 296
Q Q+ A A PA PL P P +N G+P P
Sbjct: 444 ---QFRLQQQVAAAAGIPAVQYGATGPLIYGPGGYPIPAAVNGRGMPMVP 490
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 105/209 (50%), Gaps = 41/209 (19%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG LD VSE+ ++E+F Q G VV++ + +D +T+ GY ++ + +DA A+++
Sbjct: 27 SLYVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLMTKKSLGYAYVNYGTHQDASQALEL 86
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI 154
+N + GKPIR+ + G ANIFI NL+ +D K L+DTFSAFG IL +
Sbjct: 87 LNFTLVKGKPIRIMYSHRDPSIRKSGAANIFIKNLEKSIDNKALHDTFSAFGTILSCRVV 146
Query: 155 MNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEA 214
M+ D GNSKG+ F+ + E+
Sbjct: 147 MD----------------------------------------DAGNSKGYGFVQFEKEES 166
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ +I+ ++G + +R +SV+ +K +
Sbjct: 167 AQIAIEKVNGMLINDRQVSVAPFIRKQER 195
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/285 (20%), Positives = 114/285 (40%), Gaps = 76/285 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ L+ + + + F G +++ + D + +GYGF++F EE A A
Sbjct: 112 GAANIFIKNLEKSIDNKALHDTFSAFGTILSCRVVMDDAGNS-KGYGFVQFEKEESAQIA 170
Query: 93 IKIMNMIKLYGKPIRV-------NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
I+ +N + + + + V + + KN + N+++ NL ++ L F+ F
Sbjct: 171 IEKVNGMLINDRQVSVAPFIRKQERDMASSKNFN---NVYVKNLAEATTDEDLRKVFAGF 227
Query: 146 G-----VILQ----TPKIMNMI-------------KLYGKPI--------RVNKASSHQK 175
G V+++ K + L GK I R K S +
Sbjct: 228 GPISSAVVMRDADGKSKCFGFVNFENVDDAANAVENLNGKLINEKEWYVGRAQKKSEREA 287
Query: 176 NLDV--------------GANIFIGNLDPEI--------------------MRDPDTGNS 201
L G N+++ N+D I M+ P G S
Sbjct: 288 ELKAKFEQVRKEKEEKFQGVNLYLKNIDDSIDDEKLRELFAVFGTVTSCKVMKSPQ-GQS 346
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
G F+ +++ E + +++ M+G+ + ++P+ V+ A +K+ + R
Sbjct: 347 MGSGFVTFSAPEEAMQAVNDMNGKMVGSKPLYVALAQRKEERRAR 391
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 126/264 (47%), Gaps = 54/264 (20%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G+ ++YVG LD V+++ +++ F Q G VV V + +D VT+ GYG++ F +DA A
Sbjct: 18 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 77
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
I+ +N I LYGKPIRV + GA NIFI NLD +D K L+DTFS+FG I+
Sbjct: 78 IQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSC 137
Query: 152 PKIMN---MIKLYGKPIRVNKASSHQ------------KNLDVG---------------- 180
++ K YG N+ S+ + K + VG
Sbjct: 138 KVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTK 197
Query: 181 -ANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N+++ NL +M+D + G SKGF F+N+ + + + ++
Sbjct: 198 FTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAV 256
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
++++G ++ V A KK +
Sbjct: 257 ESLNGHKFDDKEWYVGRAQKKSER 280
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 115/276 (41%), Gaps = 69/276 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV L + ++ + F + G + + + KD ++ +G+GF+ F +DA A++ +
Sbjct: 201 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKS-KGFGFVNFENADDAARAVESL 259
Query: 97 NMIKLYGKPIRVNKASS-----------HQKNLDVGA------NIFIGNLDPEVDEKLLY 139
N K K V +A +++NL A N+++ NLDP + ++ L
Sbjct: 260 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 319
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ FS FG + + ++MRDP+ G
Sbjct: 320 EIFSPFGTVTSS---------------------------------------KVMRDPN-G 339
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLL-AAQ 258
SKG F+ +A+ E + ++ + G+ + ++P+ V+ A +K+ + R + ++ A
Sbjct: 340 TSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAM 399
Query: 259 NPLSQADRP----------HQLFADAPPPAPLPPPP 284
P P Q+F PPA +PP P
Sbjct: 400 QPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQP 435
>gi|119627672|gb|EAX07267.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_g [Homo sapiens]
Length = 338
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 44/211 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ + G SKGF F+ ++S
Sbjct: 130 VML-----------------------------------------EDGRSKGFGFVCFSSP 148
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 149 EEATKAVTEMNGRIVGSKPLYVALAQRKEER 179
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 130/265 (49%), Gaps = 57/265 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E ++++ F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 71 TMNFDLIRGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDRSIDNKAMYDTFSAFGNILSCK 129
Query: 150 ------------------------QTPKIMNMIKLYGKPIRVNK---ASSHQKNLDVGA- 181
++ + +N + L GK + V + +K L A
Sbjct: 130 VAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAK 189
Query: 182 ---NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASI 219
N+++ N L E +R+ D G SKGF F+ + S EA++ ++
Sbjct: 190 LFTNVYVKNFGEDLSEEQLRNMFEKFGKITSYKVMSKDDGKSKGFGFVAFESPEAAETAV 249
Query: 220 DAMHGQYLCN-RPISVSYAFKKDSK 243
DA++G+ L +P+ V A KK +
Sbjct: 250 DALNGKELVEGKPLYVGRAQKKAER 274
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 114/271 (42%), Gaps = 61/271 (22%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVH-MPKDRVTQTHQGYGFIEFMGE 86
GE +YV + +SE + +F + G + + M KD +G+GF+ F
Sbjct: 185 GEKAKLFTNVYVKNFGEDLSEEQLRNMFEKFGKITSYKVMSKD--DGKSKGFGFVAFESP 242
Query: 87 EDADYAIKIMNMIKLY-GKPI---RVNKASSHQKNLDV--------------GANIFIGN 128
E A+ A+ +N +L GKP+ R K + Q+ L G N+++ N
Sbjct: 243 EAAETAVDALNGKELVEGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKN 302
Query: 129 LDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNL 188
LD +D++ L F+ FG I + K+M I NK S FI
Sbjct: 303 LDDTIDDERLRKEFAPFGTIT-SAKVM---------IEENKTES-----------FI--- 338
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
T SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ DR
Sbjct: 339 ---------TTRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE---DRKA 386
Query: 249 SAAERLLAAQNPLSQADRPHQLFADAPPPAP 279
+ + + R HQ+ PP P
Sbjct: 387 HLTSQYMQRMANM----RMHQMGHQFMPPGP 413
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L ++ E +L+D FS+ G +L Q P
Sbjct: 11 ASLYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + G+PIR+ ++ + VG N+FI NLD I M D
Sbjct: 71 TMNFDLIRGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDRSIDNKAMYDTFSAFGNILSCK 129
Query: 197 ----DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
+ G SKG+ F+++ + EA++ SI+ ++G L + + V + + G A+
Sbjct: 130 VAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAK 189
>gi|410078732|ref|XP_003956947.1| hypothetical protein KAFR_0D01660 [Kazachstania africana CBS 2517]
gi|372463532|emb|CCF57812.1| hypothetical protein KAFR_0D01660 [Kazachstania africana CBS 2517]
Length = 212
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 57/245 (23%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
S + T+YVG +D +V++ ++ELFVQ G + ++ P+D+V THQGY FIEF+ +
Sbjct: 2 SSSKERTVYVGNIDPRVNKEDLYELFVQFGRIKKINYPRDKVLDTHQGYAFIEFLNDSTV 61
Query: 90 DYAIKIM---NMIKLYGKPIRVNK--------ASSHQKNLDVG----ANIFIGNLDPEVD 134
DY +K+ N++ LY + +++ K A+ KN+DV A I + N+D VD
Sbjct: 62 DYVLKLFGNTNLVSLYERSLKIRKSENGKEANANGTNKNIDVDMLPIAKIIVKNVDESVD 121
Query: 135 EKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMR 194
L S FG + + I+ M
Sbjct: 122 IMKLNKICSKFGKLARDSDIVTM------------------------------------- 144
Query: 195 DPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD-RHGSAAER 253
N F+++ ++ SD +ID ++ + + N+ ISV YA K ++ G+ ++G+ +R
Sbjct: 145 ----SNGMRCGFVHFRDYKDSDLAIDKLNNELIVNKRISVEYALKGNAMGNTKYGTDTDR 200
Query: 254 LLAAQ 258
LL +
Sbjct: 201 LLNRE 205
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 124/266 (46%), Gaps = 58/266 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 19 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 78
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
MN +YGKPIR+ + GA NIFI NLD +D K +YDTFS FG IL
Sbjct: 79 TMNFDVMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKV 138
Query: 153 --------------------------KIMNMIKLYGKPIRVNK---ASSHQKNLDVGA-- 181
+ +N + L GK + V K ++ + + A
Sbjct: 139 ANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRAARMREMGETARR 198
Query: 182 --NIFIGN----LDPE----------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N+FI N LD E +M D D G SKGF F+ + + E ++ ++
Sbjct: 199 FTNVFIKNFADELDKEKLEKLFAKFGKITSCAVMSDAD-GKSKGFGFVAFENPEDAEKAV 257
Query: 220 DAMHGQYL--CNRPISVSYAFKKDSK 243
+ MH L R + V A KK+ +
Sbjct: 258 NEMHEYQLPDSERKLYVCRAQKKNER 283
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/249 (19%), Positives = 103/249 (41%), Gaps = 60/249 (24%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GE+ +++ D++ + + +LF + G + + + D ++ +G+GF+ F E
Sbjct: 193 GETARRFTNVFIKNFADELDKEKLEKLFAKFGKITSCAVMSDADGKS-KGFGFVAFENPE 251
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKNLDV-------------------GANIFIGN 128
DA+ A+ M+ +L ++ + +KN G N+++ N
Sbjct: 252 DAEKAVNEMHEYQLPDSERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKN 311
Query: 129 LDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNL 188
LD VD+++L F ++G I
Sbjct: 312 LDDTVDDEVLRQNFESYGKI---------------------------------------T 332
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
++M D D G SKGF F+ + + + ++ M+G+ +C +P+ V+ A +K+ + +
Sbjct: 333 SAKVMCD-DNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQLA 391
Query: 249 SAAERLLAA 257
S + LA+
Sbjct: 392 SQYMQRLAS 400
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 48/181 (26%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +L++ FS+ G +L Q P
Sbjct: 19 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 78
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEI-------------------M 193
MN +YGKPIR+ + GA NIFI NLD I +
Sbjct: 79 TMNFDVMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKV 138
Query: 194 RDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
+ + NSKG+ F+++ + E++ +I+ ++G L + + V + ++ G A R
Sbjct: 139 ANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRAARMREMGETARR 198
Query: 254 L 254
Sbjct: 199 F 199
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 121/263 (46%), Gaps = 54/263 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ D + A++
Sbjct: 56 ASLYVGELDSTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 115
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + + R+ + G NIFI NLD ++D K L+DTF+AFG +L
Sbjct: 116 QLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDHKALHDTFAAFGNVLSCKV 175
Query: 153 --------------------------KIMNMIKLYGKPIRVNKASS---HQKNLDVG--- 180
K +N + L K + V S Q ++D
Sbjct: 176 ATDENGRSRGFGFVHYDTAEAADTAIKAVNGMLLNDKKVFVGHYISKKERQAHIDEQKSQ 235
Query: 181 -ANIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
N+++ NLD E+ D + G SKGF F+N+ E++ A++D
Sbjct: 236 FTNLYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEEGKSKGFGFVNFKDHESAQAAVD 295
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
A+H L + + V+ A KK +
Sbjct: 296 ALHDTELNGKKLFVTRAQKKAER 318
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 129/298 (43%), Gaps = 77/298 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD+++ + + F G V++ + D ++ +G+GF+ + E AD A
Sbjct: 142 GQGNIFIKNLDEQIDHKALHDTFAAFGNVLSCKVATDENGRS-RGFGFVHYDTAEAADTA 200
Query: 93 IKIMNMIKLYGKPIRVNKASS---HQKNLDVG----ANIFIGNLDPEVDEKLLYDTFSAF 145
IK +N + L K + V S Q ++D N+++ NLD EV + D F+ F
Sbjct: 201 IKAVNGMLLNDKKVFVGHYISKKERQAHIDEQKSQFTNLYVKNLDTEVTDDEFNDMFAKF 260
Query: 146 G----VILQTPK-----------------------IMNMIKLYGKPIRVNKA-------- 170
G ++Q + ++ +L GK + V +A
Sbjct: 261 GEVTSAVVQKDEEGKSKGFGFVNFKDHESAQAAVDALHDTELNGKKLFVTRAQKKAEREE 320
Query: 171 ----SSHQKNLDV-----GANIFIGNLDPE--------------------IMRDPDTGNS 201
S Q ++ GAN++I NL+ + IMRD + G S
Sbjct: 321 ELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDKLRAEFEPFGTITSCKIMRD-EKGTS 379
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
KGF F+ Y+S E + ++ M+ + L ++P+ VS A +++ + + E +AA+N
Sbjct: 380 KGFGFVCYSSPEEATKAVAEMNNKMLGSKPLYVSPAQRREVRRQQ----LESQIAARN 433
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 128/270 (47%), Gaps = 54/270 (20%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
GG + ++YVG LD V+++ +++LF Q G VV+V + +D +Q GYG++ +
Sbjct: 19 GGVNNQFVTSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNP 78
Query: 87 EDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAF 145
+DA A++++N L+GKPIR+ ++ G NIFI NLD +D K L+DTFSAF
Sbjct: 79 QDAARALEVLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAF 138
Query: 146 GVILQTP---------------------------KIMNMIKLYGKPIRVNK-ASSHQKNL 177
G IL + +N + L K + V H++++
Sbjct: 139 GNILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYVGPFVRKHERDM 198
Query: 178 DVG----ANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFE 213
V N+F+ NL +M+D D G S+ F F+N+ + E
Sbjct: 199 AVDKTRFTNVFVKNLSESTLEEELRKIFGEFGAITSVAVMKDED-GKSRCFGFVNFENAE 257
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ +++A++G L N+ V A KK +
Sbjct: 258 DAARAVEALNGYKLDNKDWFVGRAQKKSER 287
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 115/276 (41%), Gaps = 69/276 (25%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++V L + E + ++F + G + +V + KD ++ + +GF+ F EDA A++
Sbjct: 206 TNVFVKNLSESTLEEELRKIFGEFGAITSVAVMKDEDGKS-RCFGFVNFENAEDAARAVE 264
Query: 95 IMNMIKLYGKPI---RVNKASSHQKNL--------------DVGANIFIGNLDPEVDEKL 137
+N KL K R K S + L G N++I NLD + ++
Sbjct: 265 ALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAKEAVDKSQGLNLYIKNLDDSISDEK 324
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + FS +G I ++MRDP
Sbjct: 325 LKELFSPYGTITSC---------------------------------------KVMRDP- 344
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL--- 254
+G SKG F+ +++ E + ++ M+G+ + ++P+ V+ A +K+ + R + ++
Sbjct: 345 SGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPI 404
Query: 255 -----LAAQNPLSQADRP---HQLFADAPPPAPLPP 282
+A + P+ P Q+F P PA LPP
Sbjct: 405 AMASSVAPRMPMYPPGGPGLGQQIFYGQPQPAMLPP 440
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D +G SKGF F+++ E ++ ++
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-SSGKSKGFGFVSFEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + + V A KK
Sbjct: 249 EEMNGKDINGKMVFVGRAQKK 269
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D + + + ELF + G ++V + D ++ +G+GF+ F EDA+ A++ M
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKS-KGFGFVSFEKHEDANKAVEEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N + GK + R K Q L G N++I NLD +D++ L
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I A + + + G
Sbjct: 312 KEFSPFGSI------------------------------TSAKVML-----------EDG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S + + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + +A+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M DP +G SKGF F+++ E ++ ++
Sbjct: 190 FTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDP-SGKSKGFGFVSFERHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ + + + V A KK
Sbjct: 249 DDMNGKDVNGKIMFVGRAQKK 269
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F ++ AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + ++ ++GA N++I N ++D++ L +TFS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKY 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN + GK + R K Q
Sbjct: 215 GKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 123/264 (46%), Gaps = 56/264 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E++++E+F GPV ++ + +D VT+ GY ++ ++ D + A++
Sbjct: 42 ASLYVGELDPTVTESMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 101
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + +P R+ + G NIFI NLD ++D K L+DTF+AFG +L
Sbjct: 102 QLNYSSIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKV 161
Query: 153 -------------------------------KIMNMIKLYGKPIRVNKASSHQKNLDVGA 181
++N K+Y P +++ K ++ A
Sbjct: 162 ATDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVYVGP-HISRKERQSKIDEMRA 220
Query: 182 ---NIFIGNLDPEI-------------------MRDPDTGNSKGFAFINYASFEASDASI 219
N+++ N+DPE+ ++ D G + GF F+N+ + E + ++
Sbjct: 221 HFTNLYVKNIDPEVTDEEFENLFKQYGQVQSSLLKRDDQGRNLGFGFVNFETHEEAQKAV 280
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
DA+H R + V+ A KK +
Sbjct: 281 DALHESDFHGRKLYVARAQKKAER 304
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 116/280 (41%), Gaps = 73/280 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD+++ + + F G V++ + D + +GYGF+ + E A+ A
Sbjct: 128 GQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNS-KGYGFVHYETAEAAENA 186
Query: 93 IKIMNMIKLYGKPIRVN---KASSHQKNLDVG----ANIFIGNLDPEVDEKLLYDTFSAF 145
IK +N + L K + V Q +D N+++ N+DPEV ++ + F +
Sbjct: 187 IKSVNGMLLNDKKVYVGPHISRKERQSKIDEMRAHFTNLYVKNIDPEVTDEEFENLFKQY 246
Query: 146 GVIL------------------------QTPKIMNMIK---LYGKPIRV----------- 167
G + + K ++ + +G+ + V
Sbjct: 247 GQVQSSLLKRDDQGRNLGFGFVNFETHEEAQKAVDALHESDFHGRKLYVARAQKKAEREA 306
Query: 168 ------NKASSHQKNLDVGANIFIGNLDPEI--------------------MRDPDTGNS 201
++A + N G N++I NL+ ++ MRD + G S
Sbjct: 307 ELRKQYDQARQERMNKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCRVMRD-ERGKS 365
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
KGF F+ Y++ + + ++ M+ + + ++P+ VS A +K+
Sbjct: 366 KGFGFVCYSAPDEATKAVAEMNNKMIGSKPLYVSLAQRKE 405
>gi|198422488|ref|XP_002121866.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4
(inducible form) [Ciona intestinalis]
Length = 270
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 120/246 (48%), Gaps = 57/246 (23%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F Q+GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 12 ASLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 71
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 72 TMNYDPIKGRPIRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 130
Query: 153 KIMNM--IKLYG-----------KPI-RVNKASSHQKNLDVG------------------ 180
N K YG + I +VN + K + VG
Sbjct: 131 VSCNENGSKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKFLTRSERIKKMGERVRQ 190
Query: 181 -ANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N + +MRD D GNS+GF F+ Y S E + A++
Sbjct: 191 FTNVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRD-GNSRGFGFVAYDSHEEAQAAV 249
Query: 220 DAMHGQ 225
+AM+GQ
Sbjct: 250 EAMNGQ 255
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 127/268 (47%), Gaps = 60/268 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY + F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG N+FI NL+ +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRRSGVG-NVFIKNLNKTIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVG----- 180
+ MN + L + + V + S ++ ++G
Sbjct: 130 VVSDENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKE 189
Query: 181 -ANIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D + G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTD-EGGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGDRH 247
D M+G+ L + I V A KKD DRH
Sbjct: 249 DEMNGKELNGKHIYVGRAQKKD---DRH 273
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 106/242 (43%), Gaps = 60/242 (24%)
Query: 20 SQTKLEGGGESGDGDAT-IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGY 78
SQ + E +G + T +Y+ D++ + + LF + G +++V + D ++ +G+
Sbjct: 175 SQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKS-KGF 233
Query: 79 GFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS----------------SHQKNLDV-G 121
GF+ F EDA A+ MN +L GK I V +A + K++ G
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQG 293
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGA 181
N+++ NLD +D++ L FS FG I T K+M
Sbjct: 294 INLYVKNLDDGIDDERLQKEFSPFGTITST-KVMT------------------------- 327
Query: 182 NIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
+ G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+
Sbjct: 328 ---------------EGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKE 372
Query: 242 SK 243
+
Sbjct: 373 ER 374
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 127/274 (46%), Gaps = 55/274 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 12 ASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 71
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 72 TMNFDAIKGRPIRIMWSQRDPSLRKSGVG-NIFIKNLDKNIDNKALYDTFSAFGNILSCK 130
Query: 153 KIM--------------------------NMIKLYGKPIRVNKASSHQKNLDV------- 179
M N + L GK + V + S ++ L++
Sbjct: 131 IAMDQNGSLGYGFVHFETEEAARNSIEKVNGMLLNGKKVFVGRFMSRKERLEMLGDKAKK 190
Query: 180 GANIFIGNLDPEI-------------------MRDPDTGNSKGFAFINYASFEASDASID 220
N+++ NL+ + M + + G +GF F+++ EA+ +++
Sbjct: 191 FTNVYVKNLNETMDDKKLREMFEVFGKIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVE 250
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
++ + + + I V A KK + ER+
Sbjct: 251 ELNNKEVEGKEIYVGRAQKKAERQAELKEKFERM 284
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 100/238 (42%), Gaps = 59/238 (24%)
Query: 23 KLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIE 82
+LE G+ +YV L++ + + + E+F G +++ M Q +G+GF+
Sbjct: 180 RLEMLGDKAKKFTNVYVKNLNETMDDKKLREMFEVFGKIISAKMMNTEEGQ-KRGFGFVS 238
Query: 83 FMGEEDADYAIKIMNMIKLYGKPI---RVNKASSHQKNLD--------------VGANIF 125
F E A A++ +N ++ GK I R K + Q L G N++
Sbjct: 239 FDDHEAAAKAVEELNNKEVEGKEIYVGRAQKKAERQAELKEKFERMKMERINRYQGVNLY 298
Query: 126 IGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFI 185
+ NLD ++D++ L FS FG I + ++M
Sbjct: 299 VKNLDEQIDDERLRKEFSQFGTIT-SARVMT----------------------------- 328
Query: 186 GNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G +KGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 329 -----------EGGRTKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVALAQRKEDR 375
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 123/263 (46%), Gaps = 53/263 (20%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+A++YVG L +V+E ++E F Q G V+++ + +D V++ GY ++ + DA +A+
Sbjct: 7 NASLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHAL 66
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+ +N K++ KP R+ A + GA NIFI NL+ E+D K LYDTFSAFG IL
Sbjct: 67 EELNFEKIHDKPCRIMWAQRNPAARRSGAGNIFIKNLNKEIDNKALYDTFSAFGTILSCK 126
Query: 153 ---------------------------KIMNMIKLYGKPIRVNKASSHQKNLDVG----A 181
+N L + + V K S ++ G
Sbjct: 127 VAADEKGESRGYGFVHFEKEEDAQKAIDTVNGKMLLKQVVTVTKFLSRKEREQQGGRTYT 186
Query: 182 NIFIGNL--------------------DPEIMRDPDTGNSKGFAFINYASFEASDASIDA 221
NI++ NL + + S+GF F+N+ + EA++A+++A
Sbjct: 187 NIYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKDENDKSRGFGFVNFENSEAANAAVEA 246
Query: 222 MHGQYL-CNRPISVSYAFKKDSK 243
M+ + + +R + V A KK +
Sbjct: 247 MNEKEIETDRKLFVGRAMKKHER 269
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 129/334 (38%), Gaps = 86/334 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ L+ ++ +++ F G +++ + D ++ +GYGF+ F EEDA A
Sbjct: 94 GAGNIFIKNLNKEIDNKALYDTFSAFGTILSCKVAADEKGES-RGYGFVHFEKEEDAQKA 152
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG----ANIFIGNL-DPEVDEKLLYDTFSAFGV 147
I +N L + + V K S ++ G NI++ NL D L F FG
Sbjct: 153 IDTVNGKMLLKQVVTVTKFLSRKEREQQGGRTYTNIYVKNLPDSYATNDDLKKLFEKFGT 212
Query: 148 ILQT---------------------------------PKIMNMIKLY-GKPIRVNKASSH 173
I T +I KL+ G+ ++ ++
Sbjct: 213 ITSTFLAKDENDKSRGFGFVNFENSEAANAAVEAMNEKEIETDRKLFVGRAMKKHERERE 272
Query: 174 QKNL-----------DVGANIFIGNLDPEIMRDP-------------------DTGNSKG 203
K + + +N++I +L ++ D + G+S+G
Sbjct: 273 LKRIHDKIRQERDEKNKNSNLYIKHLPEDVTEDALRDKFSKFGTITSLKIMTDNNGDSRG 332
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS-AAERLLAAQNPLS 262
F F+N+ S + + A+I MHG + +P+ V+ A + K DR A+ R + Q P+
Sbjct: 333 FGFVNFDSADEAAAAIQEMHGSMIDGKPLYVALALR---KVDRQKQLASRRTMPGQMPMG 389
Query: 263 QADRPHQLFADAPPPAPLPPPPPPINIMGLPPPP 296
P +PPP + MG PP
Sbjct: 390 YL------------PFMMPPPQANMMRMGNRFPP 411
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 82/201 (40%), Gaps = 52/201 (25%)
Query: 112 SSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------- 149
+ HQ+N A++++G+L PEV E LY+ FS G ++
Sbjct: 2 AEHQQN----ASLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQ 57
Query: 150 ------QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEI---------- 192
+ +N K++ KP R+ A + GA NIFI NL+ EI
Sbjct: 58 QHADAKHALEELNFEKIHDKPCRIMWAQRNPAARRSGAGNIFIKNLNKEIDNKALYDTFS 117
Query: 193 ---------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ + G S+G+ F+++ E + +ID ++G+ L + ++V+ + +
Sbjct: 118 AFGTILSCKVAADEKGESRGYGFVHFEKEEDAQKAIDTVNGKMLLKQVVTVTKFLSRKER 177
Query: 244 GDRHGSAAERLLAAQNPLSQA 264
+ G + P S A
Sbjct: 178 EQQGGRTYTNIYVKNLPDSYA 198
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 125/259 (48%), Gaps = 53/259 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ Y ++ F +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALD 70
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
MN + GKP+R+ + G NIF+ NLD ++ K LYDT SAFG IL
Sbjct: 71 TMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILSCNV 130
Query: 154 I--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA----- 181
+ MN + L G+ + V + S ++ ++GA
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEF 190
Query: 182 -NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASIDA 221
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 191 PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 222 MHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 251 MNGKELNGKQIYVGRAQKK 269
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I+V LD ++ +++ G +++ ++ D +GYGF+ F E A+ A
Sbjct: 97 GMGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L G+ + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 155 IEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 176 NLDVG--------------ANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L N+++ NLD +I +R + G SKG
Sbjct: 275 ELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 48/179 (26%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q PK
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALD 70
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEIMRDP---------------- 196
MN + GKP+R+ + G NIF+ NLD I
Sbjct: 71 TMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILSCNV 130
Query: 197 --DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +I+ M+G L R + V + +K+ + + A E
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 109/220 (49%), Gaps = 43/220 (19%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ F DA+ A
Sbjct: 26 ASASLYVGELDPSVTEAMLFEMFNIIGPVSSIRVCRDAVTRRSLGYAYVNFHRMADAERA 85
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG--ANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ +N + G+ R+ S +L G NIFI NLDP +D K L+DTFSAFG IL
Sbjct: 86 LETLNYSMIKGRSCRI-MWSQRDPSLRKGNNGNIFIKNLDPSIDHKALHDTFSAFGNILS 144
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
+I D + GNSKG+ F++Y
Sbjct: 145 C---------------------------------------KIAHD-EQGNSKGYGFVHYE 164
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA 250
+ EA++++I +++G L +R + V + + + + G +
Sbjct: 165 TLEAAESAIKSVNGMLLNDRKVFVGHHISRKERESKLGES 204
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 111/261 (42%), Gaps = 61/261 (23%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GES IYV + V++ + +LF + G + + + +D T +G+GF+ F +
Sbjct: 202 GESRVQFTNIYVKNIPFDVTDEELSQLFGKYGTITSCVITRDD-DGTSKGFGFVNFEKHQ 260
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKNLD-----------------VGANIFIGNLD 130
DA A+ ++ G+ + V++A + + G N+++ NLD
Sbjct: 261 DAQNAVDDLHKKDFRGQDLYVSRAQKKNEREEELRRQYEEAKLEKMSKYQGVNLYVKNLD 320
Query: 131 PEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 190
++D+ L D FS +GVI
Sbjct: 321 DDMDDDRLRDEFSVYGVITSA--------------------------------------- 341
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA 250
+IMRD T S+GF F+ + S E + ++ M+G+ + ++PI V+ A +K+ + S
Sbjct: 342 KIMRDEKTNISRGFGFVCFTSPEDATRAVTEMNGRIIGSKPIYVAIAQRKEVR----RSQ 397
Query: 251 AERLLAAQNPLSQADRPHQLF 271
E +A +N L QA P +F
Sbjct: 398 LEIQMAQRNQLKQAMMPPSVF 418
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 89/219 (40%), Gaps = 48/219 (21%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ I++ LD + + + F G +++ + D + +GYGF+ + E A+ AI
Sbjct: 115 NGNIFIKNLDPSIDHKALHDTFSAFGNILSCKIAHDEQGNS-KGYGFVHYETLEAAESAI 173
Query: 94 KIMNMIKLYGKPIRV-NKASSHQKNLDVG------ANIFIGNLDPEVDEKLLYDTFSAFG 146
K +N + L + + V + S ++ +G NI++ N+ +V ++ L F +G
Sbjct: 174 KSVNGMLLNDRKVFVGHHISRKERESKLGESRVQFTNIYVKNIPFDVTDEELSQLFGKYG 233
Query: 147 VILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAF 206
I I RD D G SKGF F
Sbjct: 234 TITSCV---------------------------------------ITRD-DDGTSKGFGF 253
Query: 207 INYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
+N+ + + ++D +H + + + VS A KK+ + +
Sbjct: 254 VNFEKHQDAQNAVDDLHKKDFRGQDLYVSRAQKKNEREE 292
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 125/259 (48%), Gaps = 53/259 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ Y ++ F +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALD 70
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
MN + GKP+R+ + G NIF+ NLD ++ K LYDT SAFG IL
Sbjct: 71 TMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILSCNV 130
Query: 154 I--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA----- 181
+ MN + L G+ + V + S ++ ++GA
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEF 190
Query: 182 -NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASIDA 221
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 191 PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 222 MHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 251 MNGKELNGKQIYVGRAQKK 269
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDVG--------------ANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L N+++ NLD ++D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLQ 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KAFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 48/179 (26%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q PK
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALD 70
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEIMRDP---------------- 196
MN + GKP+R+ + G NIF+ NLD I
Sbjct: 71 TMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILSCNV 130
Query: 197 --DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +I+ M+G L R + V + +K+ + + A E
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 127/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F ++GP++++ + +D +T+ Y ++ F +DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIF+ NLD ++ K+LYDT SAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRRSGVG-NIFVKNLDKSINNKVLYDTVSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKHIYVGRAQKK 269
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDVG--------------ANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L N+++ NLD ++D++ L
Sbjct: 252 NGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KAFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q PK
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKP+R+ ++ + VG NIF+ NLD I + D
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRRSGVG-NIFVKNLDKSINNKVLYDTVSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 125/259 (48%), Gaps = 53/259 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ Y ++ F +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALD 70
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
MN + GKP+R+ + G NIF+ NLD ++ K LYDT SAFG IL
Sbjct: 71 TMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILSCNV 130
Query: 154 I--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA----- 181
+ MN + L G+ + V + S ++ ++GA
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEF 190
Query: 182 -NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASIDA 221
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 191 PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 222 MHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 251 MNGKELNGKQIYVGRAQKK 269
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDVG--------------ANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L N+++ NLD ++D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLQ 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KAFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 48/179 (26%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q PK
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALD 70
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEIMRDP---------------- 196
MN + GKP+R+ + G NIF+ NLD I
Sbjct: 71 TMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILSCNV 130
Query: 197 --DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +I+ M+G L R + V + +K+ + + A E
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 127/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F ++GP++++ + +D +T+ Y ++ F +DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIF+ NLD ++ K+LYDT SAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRRSGVG-NIFVKNLDKSINNKVLYDTVSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDARKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDVG--------------ANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L N+++ NLD ++D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KAFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q PK
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKP+R+ ++ + VG NIF+ NLD I + D
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRRSGVG-NIFVKNLDKSINNKVLYDTVSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|365986549|ref|XP_003670106.1| hypothetical protein NDAI_0E00470 [Naumovozyma dairenensis CBS 421]
gi|343768876|emb|CCD24863.1| hypothetical protein NDAI_0E00470 [Naumovozyma dairenensis CBS 421]
Length = 258
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 116/240 (48%), Gaps = 58/240 (24%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ ++YVG +D V++ ++ELFVQ P+ + PKD++ QTHQGY FIEF ED +Y +
Sbjct: 48 ELSVYVGNIDPNVTKAQLYELFVQVSPISKIAYPKDKLLQTHQGYAFIEFYTPEDTNYVV 107
Query: 94 KIM-NMIKLYGKPIRV-----------NKASSHQKNLDVG--ANIFIGNLDPEVDEKLLY 139
K+M N + LY + ++V NK + K ++V A +F+ NLD VD + L
Sbjct: 108 KVMNNTVSLYDRFLKVRKSVQNLPSSNNKTYTTSKQVEVLPIAKVFVKNLDESVDIQQLS 167
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ F FG + + P+I + +
Sbjct: 168 NIFEKFGPLFKEPEIFYL----------------------------------------SN 187
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS---KG-DRHGSAAERLL 255
N+ A I + + SDA+I + + + N+ I++ YA+K+ KG +++GS +RLL
Sbjct: 188 NTLRCAHIFFKFYPDSDAAIGKLDNELIANKRINLDYAYKEGHTIGKGNNKYGSETDRLL 247
>gi|340375830|ref|XP_003386437.1| PREDICTED: polyadenylate-binding protein 1-like [Amphimedon
queenslandica]
Length = 618
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 122/263 (46%), Gaps = 57/263 (21%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG L V+E +++E F ++GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 16 SLYVGDLLPDVNEAVLFEQFSKAGPVLSIRVCRDLITKRSLGYAYVNFQQPADAERALDT 75
Query: 96 MNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
MN + G+P R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 76 MNYEPIKGQPCRIMWSQRDPSLRRSGVG-NIFIKNLDKSIDHKALYDTFSAFGNILSCKV 134
Query: 153 -------------------------------KIMNMIKLYGKPIRVNKASSHQKNLDVG- 180
K++N +K+Y K SH +
Sbjct: 135 ATDGNRHSKGFGFVHFDEQEAADLAIEKVNGKLLNDMKVYVGKFIPRKDRSHTNGFNQHY 194
Query: 181 ANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASID 220
N+FI N + +M+D + G SKGF F+++ S EA+ A++
Sbjct: 195 TNVFIKNFGEDFTDTMLYDVFEKYGSIVSAVVMKDGE-GLSKGFGFVSFESHEAASAAVQ 253
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
A+H + R + A KK+ +
Sbjct: 254 AVHNSIVNGRQVYCGRAQKKNER 276
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 101/226 (44%), Gaps = 58/226 (25%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+++ + ++T+++++F + G +V+ + KD + +G+GF+ F E A A++
Sbjct: 195 TNVFIKNFGEDFTDTMLYDVFEKYGSIVSAVVMKDGEGLS-KGFGFVSFESHEAASAAVQ 253
Query: 95 -----IMNMIKLY-GKPIRVN---------KASSHQKNLDV--GANIFIGNLDPEVDEKL 137
I+N ++Y G+ + N K Q+ L G N++I NL+ + E+
Sbjct: 254 AVHNSIVNGRQVYCGRAQKKNERSRELMRRKEEQRQERLSRYQGVNLYIKNLEDTLGEEK 313
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L FS FG I +IM D +
Sbjct: 314 LKSEFSKFGSITSA---------------------------------------KIMTD-E 333
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 334 FGHSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQRKEER 379
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 121/262 (46%), Gaps = 53/262 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
MN + G+PIR+ + G NIFI NLD +D K LYDTFS FG IL
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGIGNIFIKNLDDSIDNKALYDTFSTFGNILSCKV 130
Query: 150 ----------------------QTPKIMNMIKLYGKPIRVNKASSHQ-KNLDVGA----- 181
Q MN + L + + V S Q + ++GA
Sbjct: 131 VCDENGSRGFGFVHFETHEAANQAINTMNGMLLNDRKVFVGHFKSRQEREAELGARALEF 190
Query: 182 -NIFI----GNLDPEIMRD---------------PDTGNSKGFAFINYASFEASDASIDA 221
NI++ G++D E +++ + G S+GF F+N+ E + ++
Sbjct: 191 TNIYVKNFEGDMDDECLQELFSQFGKTLSVKVMVDENGQSRGFGFVNFEKHEEAQKAVSN 250
Query: 222 MHGQYLCNRPISVSYAFKKDSK 243
M+G+ L R + V A K+ +
Sbjct: 251 MNGKELGGRVLYVGRAQKRSER 272
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 118/285 (41%), Gaps = 71/285 (24%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G I++ LDD + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGIGNIFIKNLDDSIDNKALYDTFSTFGNILSCKVVCDE--NGSRGFGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQ-KNLDVGA------NIFIGNLDPEVDEKLLYD 140
A+ AI MN + L + + V S Q + ++GA NI++ N + ++D++ L +
Sbjct: 150 AANQAINTMNGMLLNDRKVFVGHFKSRQEREAELGARALEFTNIYVKNFEGDMDDECLQE 209
Query: 141 TFSAFGVILQTPKI---------------------------MNMIKLYGKPI---RVNKA 170
FS FG L + MN +L G+ + R K
Sbjct: 210 LFSQFGKTLSVKVMVDENGQSRGFGFVNFEKHEEAQKAVSNMNGKELGGRVLYVGRAQKR 269
Query: 171 SSHQKNLDV--------------GANIFIGNLDP----EIMRD--------------PDT 198
S Q L G N+++ NLD E +R +
Sbjct: 270 SERQSELKRRFEQMKQERVNRYQGVNLYVKNLDDIIDDEKLRKEFSPYGVITSAKVMTEG 329
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 50/185 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FSA G I+ Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEI----MRDP------------ 196
MN + G+PIR+ + G NIFI NLD I + D
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGIGNIFIKNLDDSIDNKALYDTFSTFGNILSCKV 130
Query: 197 --DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
D S+GF F+++ + EA++ +I+ M+G L +R + V + FK S+ +R R
Sbjct: 131 VCDENGSRGFGFVHFETHEAANQAINTMNGMLLNDRKVFVGH-FK--SRQEREAELGARA 187
Query: 255 LAAQN 259
L N
Sbjct: 188 LEFTN 192
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 118/263 (44%), Gaps = 54/263 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD VSE +++E+F GPV ++ + +D VT+ GY ++ + D + A++
Sbjct: 52 ASLYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYFNAADGERALE 111
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + G+ R+ + G NIFI NLD +D K L+DTF+AFG +L
Sbjct: 112 QLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDDAIDNKALHDTFAAFGNVLSCKV 171
Query: 153 --------------------------KIMNMIKLYGKPIRVNKASS---HQKNLDVG--- 180
K +N + L K + V S Q LD
Sbjct: 172 ATDEMGRSKGYGFVHYETNEAAESAIKAVNGMLLNDKKVYVGHHVSKKDRQAKLDEQKKQ 231
Query: 181 -ANIFIGNLDPE-------------------IMRDPDTGNSKGFAFINYASFEASDASID 220
N+++ N+DPE +++ + G S+GF F+N+ + E + ++D
Sbjct: 232 FTNVYVKNIDPEANDDEFRELFTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAVD 291
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
+H R + VS A KK +
Sbjct: 292 TLHDSDFKGRKLFVSRAQKKSER 314
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 131/321 (40%), Gaps = 79/321 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LDD + + + F G V++ + D + ++ +GYGF+ + E A+ A
Sbjct: 138 GQGNIFIKNLDDAIDNKALHDTFAAFGNVLSCKVATDEMGRS-KGYGFVHYETNEAAESA 196
Query: 93 IKIMNMIKLYGKPIRVNKASS---HQKNLDVG----ANIFIGNLDPEVDEKLLYDTFSAF 145
IK +N + L K + V S Q LD N+++ N+DPE ++ + F+ F
Sbjct: 197 IKAVNGMLLNDKKVYVGHHVSKKDRQAKLDEQKKQFTNVYVKNIDPEANDDEFRELFTPF 256
Query: 146 G----VILQTPK-----------------------IMNMIKLYGKPI---RVNKASSHQK 175
G +LQ + ++ G+ + R K S ++
Sbjct: 257 GNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAVDTLHDSDFKGRKLFVSRAQKKSEREE 316
Query: 176 NLDV--------------GANIFIGNL----DPEIMRDP---------------DTGNSK 202
L G N++I NL D E +RD + G SK
Sbjct: 317 ELRRSYEQAKMEKMSKYQGVNLYIKNLEDDVDDEKLRDAFEPFGAITSAKVMRTEGGTSK 376
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLS 262
GF F+ ++S + + ++ M+ + + ++P+ VS A +++ + + E +A +N +
Sbjct: 377 GFGFVCFSSPDEATKAVAEMNNKMMGSKPLYVSLAQRREVRRQQ----LESQIAQRNQI- 431
Query: 263 QADRPHQLFADAPPPAPLPPP 283
R Q A P + PP
Sbjct: 432 ---RMQQAAAAGMPAGYMNPP 449
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 123/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++Y+G L V+E +++E F +GP++++ + +D T+ Y +I F DA+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG-NVFIKNLDESIDNKALYDTFSAFGNILSCK 129
Query: 153 --------------------------KIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V S ++ L+ GA
Sbjct: 130 VVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D D+G S+GF F+NY + E + ++
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
M+G+ + R I V A K+
Sbjct: 249 SEMNGKEVNGRMIYVGRAQKR 269
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 147/364 (40%), Gaps = 91/364 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G +++ LD+ + +++ F G +++ + D +GYGF+ F E
Sbjct: 92 GLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A+ AI+ MN + L + + V S ++ L+ GA N++I N ++D+K L +
Sbjct: 150 AANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLRE 209
Query: 141 TFSAFGVILQTPKIMN----------------------MIKLYGKPI------------R 166
FSAFG L +M+ + ++ GK + R
Sbjct: 210 IFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Query: 167 VNKASSHQKNLDV----------GANIFIGNLDPEIMRD------------------PDT 198
+ + S ++ + G N+++ NLD I D +
Sbjct: 270 IERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG 329
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK----GDRHGSAAERL 254
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + +++ +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATM 389
Query: 255 LAAQNPL-------------SQADRPHQLFADAPPPAPLPPPPPPINIMGLPP---PPPS 298
A PL + P++ F P AP+ P P + PP PP
Sbjct: 390 RAMPGPLLGSFQQPANYFLSAMPQPPNRTFYSPNPVAPVRPAPQWASHQSRPPQYQPPTP 449
Query: 299 GLRA 302
+RA
Sbjct: 450 LMRA 453
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 125/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN + G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG IL
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
Q MN + L + + V S ++ +++GA
Sbjct: 130 VVCDDHGSRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVELGARAME 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N L ++MRD D+G+S+GF F+N+ E + ++
Sbjct: 190 FTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
M+G+ + R + V A K+
Sbjct: 249 MDMNGKEVSGRLLYVGRAQKR 269
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/343 (23%), Positives = 141/343 (41%), Gaps = 79/343 (23%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G I++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI MN + L + + V S ++ +++GA NI++ NL +VDE+ L D
Sbjct: 150 AAQQAITTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQD 209
Query: 141 TFSAFGVILQTPKIMN-----------------------MIKLYGKPI------------ 165
FS FG +L K+M ++ + GK +
Sbjct: 210 LFSRFGKMLSV-KVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQK 268
Query: 166 RVNKASSHQKNLD----------VGANIFIGNLDPEI----MRD--------------PD 197
RV + S ++ + G N+++ NLD I +R +
Sbjct: 269 RVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE 328
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK----GDRHGSAAER 253
G+SKGF F+ ++S E + ++ M+G+ L +P+ V+ A +K+ + +++
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQRKEERKAILTNQYMQRLST 388
Query: 254 LLAAQNPLSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPP 296
+ A PL + HQ + P P PP GLP P
Sbjct: 389 VRALGGPLLGSF--HQPTSYFLPSVPQPPAQAAYYASGLPMQP 429
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 123/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++Y+G L V+E +++E F +GP++++ + +D T+ Y +I F DA+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG-NVFIKNLDESIDNKALYDTFSAFGNILSCK 129
Query: 153 --------------------------KIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V S ++ L+ GA
Sbjct: 130 VVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D D+G S+GF F+NY + E + ++
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
M+G+ + R I V A K+
Sbjct: 249 SEMNGKEVNGRMIYVGRAQKR 269
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 147/364 (40%), Gaps = 91/364 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G +++ LD+ + +++ F G +++ + D +GYGF+ F E
Sbjct: 92 GLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A+ AI+ MN + L + + V S ++ L+ GA N++I N ++D+K L +
Sbjct: 150 AANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLRE 209
Query: 141 TFSAFGVILQTPKIMN----------------------MIKLYGKPI------------R 166
FSAFG L +M+ + ++ GK + R
Sbjct: 210 IFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Query: 167 VNKASSHQKNLDV----------GANIFIGNLDPEIMRD------------------PDT 198
+ + S ++ + G N+++ NLD I D +
Sbjct: 270 IERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG 329
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK----GDRHGSAAERL 254
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + +++ +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATM 389
Query: 255 LAAQNPL-------------SQADRPHQLFADAPPPAPLPPPPPPINIMGLPP---PPPS 298
A PL + P++ F P AP+ P P + PP PP
Sbjct: 390 RAMPGPLLGSFQQPANYFLSAMPQPPNRTFYSPNPVAPVRPAPQWASHQSRPPQYQPPTP 449
Query: 299 GLRA 302
+RA
Sbjct: 450 LMRA 453
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 120/262 (45%), Gaps = 55/262 (20%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG L +V+E ++E+F GPVV++ + +D +T+ GY ++ F DA+ A+
Sbjct: 46 SLYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDAERALDT 105
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI 154
+N + GKP R+ + G N+FI NLD +D K L DTFSAFG IL +
Sbjct: 106 LNYSLIRGKPCRIMWSQRDPAVRKSGLGNVFIKNLDKTIDNKALLDTFSAFGNILSCKVV 165
Query: 155 --------------------------MNMIKLYGKPIRVNKASSHQKNLDVG------AN 182
+N + + GK + V ++ +++G N
Sbjct: 166 TDENGSKGYGFVHYETQEAAETAIAKVNGMVINGKQVFVGIFVPRKERVELGEGVTKFTN 225
Query: 183 IFIGNLDPE---------------------IMRDPDTGNSKGFAFINYASFEASDASIDA 221
+F+ NL PE IM+ D SKGF F+ Y E + A+++A
Sbjct: 226 VFVKNL-PEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVNA 284
Query: 222 MHGQYLCNRPISVSYAFKKDSK 243
++G L + + V+ A KK +
Sbjct: 285 LNGTELAGKTLFVARAQKKAER 306
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/332 (21%), Positives = 126/332 (37%), Gaps = 78/332 (23%)
Query: 4 GREIQAGISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVN 63
G+++ GI P + + GE ++V L + ++ + ++F + G + +
Sbjct: 199 GKQVFVGIFVPRKERVEL------GEGVTKFTNVFVKNLPEDTTDAALNDMFSKFGKITS 252
Query: 64 VHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQK------- 116
V + K +G+GF+ + EDA A+ +N +L GK + V +A +
Sbjct: 253 VVIMKSSDDDKSKGFGFVCYEKVEDAQAAVNALNGTELAGKTLFVARAQKKAEREAELKQ 312
Query: 117 ----------NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIR 166
N G N+++ NLD +DE + F+ FG I
Sbjct: 313 RYDALRLERINKYQGINLYVKNLDDAIDEDKIRTEFAPFGTITSV--------------- 357
Query: 167 VNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQY 226
+IMRD + G S+GF FI ++S E + ++ M+GQ
Sbjct: 358 ------------------------KIMRD-EKGKSRGFGFICFSSAEEATKAVTEMNGQT 392
Query: 227 LCN--RPISVSYAFKKD------------SKGDRHGSAAERLLAAQNPLSQADRPHQLFA 272
+ +P+ V+ A + + +G+ G A ++A P A P +A
Sbjct: 393 IQGFPKPLYVALAQRAEDRRAQLAAHFAQQRGNMGGRMAGGVIAGMPPQYMAG-PQMFYA 451
Query: 273 DAPPPAPLPPPPPPINIMGLPPPPPSGLRASA 304
P + P + P P G+ A A
Sbjct: 452 GVPQNRGMVYPQNVMRRGAWPANVPVGVAAGA 483
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 119/263 (45%), Gaps = 54/263 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF GPV ++ + +D VT+ GY ++ F ED + A+
Sbjct: 80 ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + G+P R+ + +G N+FI NLDP +D K L+DTFSAFG IL
Sbjct: 140 ELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKV 199
Query: 154 IMNMI---KLYG------------------------KPIRV-NKASSHQKNLDVGA---- 181
++ + K YG K + V + S ++ V A
Sbjct: 200 AVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKAN 259
Query: 182 --NIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
N++I NLD EI +GF F+NYA+ E + ++D
Sbjct: 260 FTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVD 319
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
++ + + + V A KK +
Sbjct: 320 ELNDKEYKGKKLYVGRAQKKHER 342
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 58/224 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ LD +++E +LF Q G + ++ + KD+ +G+GF+ + E A A+ +
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDEL 321
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N + GK + V +A H++ ++ G N+FI NL EVD++ L
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FSAFG I +IM D + G
Sbjct: 382 AEFSAFGTITSA---------------------------------------KIMTD-EQG 401
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ Y + E ++ ++ M+ + L +P+ V+ A +K+ +
Sbjct: 402 KSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVR 445
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 128/274 (46%), Gaps = 57/274 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN + G+PIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDTIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGA----- 181
Q + +N + L GK + V K ++ + +
Sbjct: 130 IASDENGSKGYGFVHFETEEAARQAIEKVNGMLLNGKKVYVGKFIPRKERIALLGDKMKR 189
Query: 182 --NIFIGNLDPEI-------MRDP------------DTGNSKGFAFINYASFEASDASID 220
N++I N E+ + DP + G S+GF F++Y EA++ ++D
Sbjct: 190 FNNVYIKNFGDELDDDKIRELFDPFGKIISAKVMTDEIGKSRGFGFVSYEEPEAAEKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
++G L V YA + K +R ++
Sbjct: 250 NLNGMELGGG--KVLYAGRAQKKAERQAELKDKF 281
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 122/302 (40%), Gaps = 77/302 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GYGF+ F EE A A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIASDE--NGSKGYGFVHFETEEAARQA 154
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA-------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ +N + L GK + V K ++ + + N++I N E+D+ + + F F
Sbjct: 155 IEKVNGMLLNGKKVYVGKFIPRKERIALLGDKMKRFNNVYIKNFGDELDDDKIRELFDPF 214
Query: 146 GVILQTPKIM----------------------------NMIKLYGKPI----RVNKASSH 173
G I+ + K+M N ++L G + R K +
Sbjct: 215 GKII-SAKVMTDEIGKSRGFGFVSYEEPEAAEKAVDNLNGMELGGGKVLYAGRAQKKAER 273
Query: 174 QKNLD--------------VGANIFIGNL----DPEIMRD--------------PDTGNS 201
Q L G N+++ NL D E +R + G S
Sbjct: 274 QAELKDKFEKIKMERINRYQGVNLYVKNLDDVVDDERLRKEFSQFGTITSARVMSEGGRS 333
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPL 261
KGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ DR A + + +
Sbjct: 334 KGFGFVCFSSPEEATKAVTEMNGRIIVSKPLYVALAQRKE---DRRAHLASQYMQRMTTM 390
Query: 262 SQ 263
Q
Sbjct: 391 RQ 392
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 129/304 (42%), Gaps = 58/304 (19%)
Query: 8 QAGISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMP 67
Q + P Q T A++YVG LD V+E +++ELF G V ++ +
Sbjct: 21 QINTNVPAAQGEVSTPTSAAPAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVC 80
Query: 68 KDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFI 126
+D VT+ GY ++ + ED + A++ +N + GKP R+ + G N+FI
Sbjct: 81 RDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFI 140
Query: 127 GNLDPEVDEKLLYDTFSAFGVILQTPKIMNMI---KLYG-----KPIRVNKASSH----- 173
NLD +D K L+DTF+AFG IL + + K YG N A H
Sbjct: 141 KNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGML 200
Query: 174 --QKNLDVG-------------------ANIFIGNLD--------------------PEI 192
+K + VG NI++ N+D I
Sbjct: 201 LNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSASI 260
Query: 193 MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD--RHGSA 250
RD D G S+GF F+NY EA+ A++DA++ + + V A KK + + R
Sbjct: 261 ARD-DQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYE 319
Query: 251 AERL 254
A RL
Sbjct: 320 AARL 323
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 116/268 (43%), Gaps = 33/268 (12%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
IYV +D VS+ +LF + G + + + +D ++ +G+GF+ ++ E A A+
Sbjct: 230 NIYVKNIDLDVSDEDFRDLFEKHGDITSASIARDDQGKS-RGFGFVNYIKHEAASAAVDA 288
Query: 96 MNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N G+ + V +A H++ ++ G N++I NL+ +VD++ L
Sbjct: 289 LNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKL 348
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
D F+ FG I + + + G ++ K A + +
Sbjct: 349 RDMFTPFGTITSAKVMRDAMPAAGSEDATDEKKDESKEESEEAKDESKEDSDDKKDEKAD 408
Query: 199 -----------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRH 247
G SKGF F+ +++ + + ++ M+ + + N+P+ V+ A +KD + ++
Sbjct: 409 KVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIENKPLYVALAQRKDVRKNQ- 467
Query: 248 GSAAERLLAAQNPLSQADRPHQLFADAP 275
E + A+N L + Q F P
Sbjct: 468 ---LEATIQARNQLRMQQQQQQQFGGIP 492
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 127/275 (46%), Gaps = 60/275 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN + G+PIR+ ++ + VG N+FI NL+ +D K LYDTFS FG IL
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVG-NVFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
Q MN + L + + V S ++ ++GA
Sbjct: 130 VVCDDHGSRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRREREAELGARATA 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N L ++MRD D+G+S+GF F+N+ E + ++
Sbjct: 190 FTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
M+G + R + V A K +G+R R
Sbjct: 249 MDMNGMQVSGRLLYVGRAQK---RGERQNELKRRF 280
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 119/285 (41%), Gaps = 71/285 (24%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G +++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI MN + L + + V S ++ ++GA NI++ NL VDE+ L D
Sbjct: 150 AAQQAISTMNGMLLNDRKVFVGHFKSRREREAELGARATAFTNIYVKNLPGHVDERGLQD 209
Query: 141 TFSAFGVILQTPKI---------------------------MNMIKLYGKPIRVNKAS-- 171
FS FG +L + MN +++ G+ + V +A
Sbjct: 210 LFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGMQVSGRLLYVGRAQKR 269
Query: 172 -----------SHQK----NLDVGANIFIGNLDPEI----MRD--------------PDT 198
H K N G N+++ NLD I +R +
Sbjct: 270 GERQNELKRRFEHTKQDRLNRCQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG 329
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALAQRKEER 374
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 129/280 (46%), Gaps = 58/280 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 59 ASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTSDGEKALE 118
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 119 ELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 178
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 179 AQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 238
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N++PE + RD D G S+GF F+NY + E++ ++
Sbjct: 239 FTNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQD-GKSRGFGFVNYTTHESAYKAV 297
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
D ++G+ + + V A KK + + R A RL A
Sbjct: 298 DELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARLEKA 337
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 109/243 (44%), Gaps = 24/243 (9%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
IYV ++ + S+ ELF + G + + + +D+ ++ +G+GF+ + E A A+
Sbjct: 241 NIYVKNVNPEASDDEFRELFERYGEITSSSLARDQDGKS-RGFGFVNYTTHESAYKAVDE 299
Query: 96 MNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N G+ + V +A H++ ++ G N++I NLD +VD++ L
Sbjct: 300 LNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDEKL 359
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
FS FG I + K+M G + + G + E D
Sbjct: 360 RHMFSEFGPIT-SAKVMRDAPSDGSDEEKEDEQEAEPKKE-GNVVEADEEGSEKKGDKKF 417
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
G SKGF F+ +++ + + ++ M + + +P+ V+ A +KD + S E + A+
Sbjct: 418 GKSKGFGFVCFSNPDDATKAVAEMSQRMINGKPLYVALAQRKDVR----KSQLEASIQAR 473
Query: 259 NPL 261
N L
Sbjct: 474 NQL 476
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 129/265 (48%), Gaps = 57/265 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 71 TMNFDLIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDRSIDNKAMYDTFSAFGNILSCK 129
Query: 150 ------------------------QTPKIMNMIKLYGKPIRVNK---ASSHQKNLDVGA- 181
++ + +N + L GK + V + +K L A
Sbjct: 130 VAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAK 189
Query: 182 ---NIFIGNLDPEIMRD-------------------PDTGNSKGFAFINYASFEASDASI 219
N+++ N ++ + D G SKGF F+ + S EA++ ++
Sbjct: 190 LFTNVYVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKDDGKSKGFGFVAFESPEAAETAV 249
Query: 220 DAMHGQYLCN-RPISVSYAFKKDSK 243
+A++G+ + + +P+ V A KK +
Sbjct: 250 EALNGKEIIDGKPLYVGRAQKKAER 274
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 99/235 (42%), Gaps = 62/235 (26%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVH-MPKDRVTQTHQGYGFIEFMGE 86
GE +YV + ++E + +F + G + + M KD +G+GF+ F
Sbjct: 185 GEKAKLFTNVYVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKD--DGKSKGFGFVAFESP 242
Query: 87 EDADYAIKIMNMIKLY-GKPI---RVNKASSHQKNLDV--------------GANIFIGN 128
E A+ A++ +N ++ GKP+ R K + Q+ L G N+++ N
Sbjct: 243 EAAETAVEALNGKEIIDGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKN 302
Query: 129 LDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNL 188
LD +D++ L FS FG I + K+M
Sbjct: 303 LDDTIDDERLRKEFSPFGTIT-SAKVM--------------------------------- 328
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
M D SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 329 ----MED---NRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEDR 376
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L ++ E +L++ FS G +L Q P
Sbjct: 11 ASLYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + G+PIR+ ++ + VG N+FI NLD I M D
Sbjct: 71 TMNFDLIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDRSIDNKAMYDTFSAFGNILSCK 129
Query: 197 ----DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
+ G SKG+ F+++ + EA++ SI+ ++G L + + V + + G A+
Sbjct: 130 VAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAK 189
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 129/270 (47%), Gaps = 54/270 (20%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
GG + ++YVG LD V+++ +++LF Q G VV+V + +D +Q GYG++ +
Sbjct: 19 GGVNNQFVTSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNP 78
Query: 87 EDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAF 145
+DA A++++N L+GKPIR+ ++ G NIFI NLD +D K L+DTFSAF
Sbjct: 79 QDAARALEVLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAF 138
Query: 146 GVILQTPKIMN---MIKLYG-----------KPI-RVNKASSHQKNLDVG---------- 180
G IL ++ K YG K I ++N + K + VG
Sbjct: 139 GNILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYVGPFVRKQERDM 198
Query: 181 -------ANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFE 213
N+F+ NL +M+D D G S+ F F+N+ + E
Sbjct: 199 AVDKTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKDED-GKSRCFGFVNFENAE 257
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ +++A++G L N+ V A KK +
Sbjct: 258 DAARAVEALNGYKLDNKDWFVGRAQKKSER 287
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 136/330 (41%), Gaps = 82/330 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G+ I++ LD + + + F G +++ + D Q+ +GYGF+++ +E A A
Sbjct: 113 GNGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSGQS-KGYGFVQYDSDEAAQKA 171
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVG----ANIFIGNLDPEVDEKLLYDTFSAFGV 147
I+ +N + L K + V ++++ V N+F+ NL E+ L F FG
Sbjct: 172 IEKLNGMLLNDKQVYVGPFVRKQERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGT 231
Query: 148 IL---------------------------QTPKIMNMIKLYGKPIRVNKAS--------- 171
I + + +N KL K V +A
Sbjct: 232 ITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMEL 291
Query: 172 ------SHQKNLDV--GANIFIGNLDPEI--------------------MRDPDTGNSKG 203
S Q+ +D G N+++ NLD I MRDP +G SKG
Sbjct: 292 KHRFEQSAQEAVDKSQGLNLYLKNLDDSISDDKLKELFSPYGTITSCKVMRDP-SGVSKG 350
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL--------L 255
F+ +++ E + ++ M+G+ + ++P+ V+ A +K+ + R + ++ +
Sbjct: 351 SGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPIAMASSV 410
Query: 256 AAQNPLSQADRP---HQLFADAPPPAPLPP 282
A + P+ P Q+F PPPA LPP
Sbjct: 411 APRMPMYPPGGPGLGQQIFYGQPPPAMLPP 440
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 125/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG IL
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V S ++ +++GA
Sbjct: 130 VVCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAME 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N L ++MRD D+G+S+GF F+N+ E + ++
Sbjct: 190 FTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
M+G+ + R + V A K+
Sbjct: 249 VNMNGREVSGRLLYVGRAQKR 269
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 141/353 (39%), Gaps = 85/353 (24%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G I++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI MN + L + + V S ++ +++GA NI++ NL +VDE+ L D
Sbjct: 150 AAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQD 209
Query: 141 TFSAFGVILQTPKIMN-----------------------MIKLYGKPI--------RVNK 169
FS FG +L K+M ++ + G+ + R K
Sbjct: 210 LFSQFGKMLSV-KVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQK 268
Query: 170 ASSHQKNLDV--------------GANIFIGNLDPEI----MRD--------------PD 197
Q L G N+++ NLD I +R +
Sbjct: 269 RVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE 328
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK----GDRHGSAAER 253
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + +++
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLST 388
Query: 254 LLAAQNP-LSQADRPHQLFADA--PPPAPLP-----PPPPPINIMGLPPPPPS 298
+ A P L +P F A PPA P PP P PP PS
Sbjct: 389 MRALGGPILGSFQQPASYFLPAVPQPPAQAPYYGSGPPIQPAPRWTAQPPRPS 441
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 122/266 (45%), Gaps = 58/266 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 18 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 77
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
MN +YGKPIR+ + GA NIFI NLD +D K +YDTFS FG IL
Sbjct: 78 TMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKV 137
Query: 153 --------------------------KIMNMIKLYGKPIRVNKASSHQKNL-DVG----- 180
+ +N + L GK + V K L ++G
Sbjct: 138 ANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETARR 197
Query: 181 -ANIFIGN----LDPE----------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N LD E +M D D G SKGF F+ + + E ++ ++
Sbjct: 198 FTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDAD-GKSKGFGFVAFENPEDAEKAV 256
Query: 220 DAMHGQYL--CNRPISVSYAFKKDSK 243
MH L R + V A KK+ +
Sbjct: 257 TEMHEYELPGTERKLYVCRAQKKNER 282
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 105/254 (41%), Gaps = 60/254 (23%)
Query: 23 KLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIE 82
+L GE+ +Y+ D++ + + +LF + G + + + D ++ +G+GF+
Sbjct: 187 RLREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKS-KGFGFVA 245
Query: 83 FMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDV-------------------GAN 123
F EDA+ A+ M+ +L G ++ + +KN G N
Sbjct: 246 FENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVN 305
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+++ NLD V++ +L F A+G I
Sbjct: 306 LYVKNLDDTVNDDILKQNFEAYGKI----------------------------------- 330
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++M D D G SKGF F+ + + + ++ M+G+ +C +P+ V+ A +K+ +
Sbjct: 331 ----TSAKVMCD-DNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDR 385
Query: 244 GDRHGSAAERLLAA 257
+ S + LA+
Sbjct: 386 KAQLASQYMQRLAS 399
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 48/181 (26%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +L++ FS+ G +L Q P
Sbjct: 18 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 77
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEI-------------------M 193
MN +YGKPIR+ + GA NIFI NLD I +
Sbjct: 78 TMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKV 137
Query: 194 RDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
+ + NSKG+ F+++ + E++ +I+ ++G L + + V + ++ G A R
Sbjct: 138 ANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETARR 197
Query: 254 L 254
Sbjct: 198 F 198
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 122/266 (45%), Gaps = 58/266 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 18 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 77
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
MN +YGKPIR+ + GA NIFI NLD +D K +YDTFS FG IL
Sbjct: 78 TMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKV 137
Query: 153 --------------------------KIMNMIKLYGKPIRVNKASSHQKNL-DVG----- 180
+ +N + L GK + V K L ++G
Sbjct: 138 ANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETARR 197
Query: 181 -ANIFIGN----LDPE----------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N LD E +M D D G SKGF F+ + + E ++ ++
Sbjct: 198 FTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDAD-GKSKGFGFVAFENPEDAEKAV 256
Query: 220 DAMHGQYL--CNRPISVSYAFKKDSK 243
MH L R + V A KK+ +
Sbjct: 257 TEMHEYELPGTERKLYVCRAQKKNER 282
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 105/254 (41%), Gaps = 60/254 (23%)
Query: 23 KLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIE 82
+L GE+ +Y+ D++ + + +LF + G + + + D ++ +G+GF+
Sbjct: 187 RLREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKS-KGFGFVA 245
Query: 83 FMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDV-------------------GAN 123
F EDA+ A+ M+ +L G ++ + +KN G N
Sbjct: 246 FENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVN 305
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+++ NLD V++ +L F A+G I
Sbjct: 306 LYVKNLDDTVNDDILKQNFEAYGKI----------------------------------- 330
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++M D D G SKGF F+ + + + ++ M+G+ +C +P+ V+ A +K+ +
Sbjct: 331 ----TSAKVMCD-DNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDR 385
Query: 244 GDRHGSAAERLLAA 257
+ S + LA+
Sbjct: 386 KAQLASQYMQRLAS 399
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 48/181 (26%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +L++ FS+ G +L Q P
Sbjct: 18 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 77
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEI-------------------M 193
MN +YGKPIR+ + GA NIFI NLD I +
Sbjct: 78 TMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKV 137
Query: 194 RDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
+ + NSKG+ F+++ + E++ +I+ ++G L + + V + ++ G A R
Sbjct: 138 ANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETARR 197
Query: 254 L 254
Sbjct: 198 F 198
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 46/229 (20%)
Query: 20 SQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYG 79
++TK E G S A++Y+G LD V+E +++ELF GPV ++ + +D VT+ GY
Sbjct: 56 NKTKSENGNTSTS--ASLYIGELDPMVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYA 113
Query: 80 FIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLL 138
++ F ED + A+ +N + G+P R+ + +G N+FI NLDP +D K L
Sbjct: 114 YVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKAL 173
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
+DTFSAFG IL ++ +
Sbjct: 174 HDTFSAFGKILSCKVAVD----------------------------------------EL 193
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRH 247
GNSKG+ F+++ S ++++A+I+ ++G L ++ + V + S+ DR
Sbjct: 194 GNSKGYGFVHFDSVDSANAAIEHVNGMLLNDKKVYVGHHI---SRRDRQ 239
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 113/283 (39%), Gaps = 64/283 (22%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV LD +E +LF + G + ++ + KD + +G+ F+ F + A A+ +
Sbjct: 252 VYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKDNAGK-FRGFAFVNFATHDSAQQAVDEL 310
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N + GK + V +A H++ ++ G N+F+ NL E+D++ L
Sbjct: 311 NDFEYKGKKLYVGRAQKKHERQEELRKQYEQMKLEKINKYQGVNLFVKNLQDEIDDERLK 370
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FSAFG I ++M D +
Sbjct: 371 SEFSAFGTITSA---------------------------------------KVMTD-ENN 390
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD---SKGDRHGSAAERLLA 256
SKGF F+ Y++ E + +I M+ + L +P+ V+ A +K+ S+ + A +
Sbjct: 391 KSKGFGFVCYSNPEEATKAIAEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRL 450
Query: 257 AQNPLSQADRPHQLFADAPPPAPLPP---PPPPINIMGLPPPP 296
Q + A P P P P PP+N G+P P
Sbjct: 451 QQQVAAAAGIPAAAVQYGAAPIVFGPGGYPMPPVNARGMPIVP 493
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 126/274 (45%), Gaps = 70/274 (25%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED------ 88
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADVMPTST 70
Query: 89 -------ADYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLY 139
+ A+ MN + GKPIR+ ++ + VG N+FI NLD +D K LY
Sbjct: 71 SSSPLTVTERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALY 129
Query: 140 DTFSAFGVILQTPKI--------------------------MNMIKLYGKPIRVNK-ASS 172
DTFSAFG IL + MN + L + + V + S
Sbjct: 130 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 189
Query: 173 HQKNLDVGA------NIFIGNLDPE--------------------IMRDPDTGNSKGFAF 206
++ ++GA N++I N E +MRDP +G SKGF F
Sbjct: 190 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGF 248
Query: 207 INYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
++Y E ++ +++ M+G+ + + I V A KK
Sbjct: 249 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKK 282
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 110 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 167
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 168 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 227
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 228 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 287
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 288 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 347
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 348 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 387
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 63/193 (32%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADVMPTST 70
Query: 154 -------------IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MR 194
MN + GKPIR+ ++ + VG N+FI NLD I +
Sbjct: 71 SSSPLTVTERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALY 129
Query: 195 DP--------------DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFK 239
D D SKG+AF+++ + EA+D +I+ M+G L +R + V + +
Sbjct: 130 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 189
Query: 240 KDSKGDRHGSAAE 252
K+ + + A E
Sbjct: 190 KEREAELGAKAKE 202
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 124/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++Y+G L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG-NVFIKNLDDSIDNKALYDTFSAFGDILSCK 129
Query: 153 --------------------------KIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V S ++ L+ GA
Sbjct: 130 VVCDEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D ++G S+GF F+NY + E + ++
Sbjct: 190 FTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
M+G+ + R + V A K+
Sbjct: 249 TEMNGKEVNGRMVYVGRAQKR 269
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 119/285 (41%), Gaps = 71/285 (24%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G +++ LDD + +++ F G +++ + D +GYGF+ F +E
Sbjct: 92 GLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGS--RGYGFVHFETQE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A+ AI+ MN + L + + V S ++ L+ GA N++I N ++D+K L +
Sbjct: 150 AANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKE 209
Query: 141 TFSAFGVILQTPKIMN----------------------MIKLYGKPI--------RVNKA 170
FSAFG L +M+ + ++ GK + R K
Sbjct: 210 IFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKR 269
Query: 171 SSHQKNLDV--------------GANIFIGNLDPEIMRD------------------PDT 198
Q L G N+++ NLD I D +
Sbjct: 270 IERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG 329
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 127/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F ++GP++++ + +D +T+ Y ++ F +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSNYAYVNFQHPKDAEHALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIF+ NLD ++ K LYDT SAFG +L
Sbjct: 71 TMNFDVIKGKPLRIMWSQRDPSLRKSGVG-NIFVKNLDKSINNKALYDTVSAFGNVLSCK 129
Query: 153 KIMN---------------------MIKLYGKPIRVNKA------SSHQKNLDVGA---- 181
+ + + K+ G P+ K S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFGTREAAERAIEKMNGIPLNDCKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D +G SKGF F+++ E + ++D
Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D+ ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKS-KGFGFVSFEKHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDVG--------------ANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L N+++ NLD +D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDAIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KAFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATEPLYVALAQRKEER 374
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 117/261 (44%), Gaps = 54/261 (20%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ D + A++ +
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTSDGERALEQL 105
Query: 97 NMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP--- 152
N + + R+ + G NIFI NLD ++D K L+DTF+AFG +L
Sbjct: 106 NYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVAT 165
Query: 153 ------------------------KIMNMIKLYGKPIRVN---KASSHQKNLDVG----A 181
K +N + L K + V Q LD
Sbjct: 166 DEHGRSKGYGFVHYETGEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLDEMKAQFT 225
Query: 182 NIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASIDAM 222
N++I NLD + +D + GNSKGF F+NY E + +++DA+
Sbjct: 226 NLYIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVDEEGNSKGFGFVNYEHHEEAQSAVDAL 285
Query: 223 HGQYLCNRPISVSYAFKKDSK 243
H + + + VS A KK +
Sbjct: 286 HDTDIRGKKLFVSRAQKKAER 306
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 120/287 (41%), Gaps = 69/287 (24%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ LD V++ E+F + G V + + D + +G+GF+ + E+A A+ +
Sbjct: 227 LYIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVDEEGNS-KGFGFVNYEHHEEAQSAVDAL 285
Query: 97 NMIKLYGKPIRVNKA------------SSHQKNLDV-----GANIFIGNLDPEVDEKLLY 139
+ + GK + V++A S Q ++ G N++I NL+ +VD++ L
Sbjct: 286 HDTDIRGKKLFVSRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYIKNLEDDVDDEKLR 345
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
F FG I ++MRD D
Sbjct: 346 AEFEPFGTITSC---------------------------------------KVMRD-DKS 365
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA-AERLLAAQ 258
SKGF F+ ++S + + ++ M+ + + ++P+ VS A +++ + + S A+R
Sbjct: 366 TSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQRNQIRM 425
Query: 259 NPLSQADRPHQLFADAP---PPAPLPPPPPPINIMG------LPPPP 296
+ A P + + P PP P PP N+MG LPP P
Sbjct: 426 QQAAAAGIPGG-YINGPMYYPPGPGSFPPQGRNMMGYGQPGMLPPRP 471
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 130/284 (45%), Gaps = 56/284 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L + +E ++++ F Q+GPV+++ + +D +T+ GY ++ F EDA+ AI
Sbjct: 11 ASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAID 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN +L GK IR+ ++ + VG NIFI NLD +D K+LYDTFSAFG IL
Sbjct: 71 TMNFDELKGKAIRIMWSQRDPALRKSGVG-NIFIKNLDKTIDNKMLYDTFSAFGNILSCK 129
Query: 153 KIMNMI---KLYG------------------------KPIRVNKASSH-QKNLDVG---- 180
+N+ K YG K + V + S ++ + G
Sbjct: 130 VNVNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREYGDRAK 189
Query: 181 --ANIFIGNLDPE-------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N+FI NL E + + G S+ F F+++ + E ++ +
Sbjct: 190 QFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHECAEKVV 249
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
+ +H + + I V A KK + E+L +N Q
Sbjct: 250 EKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQ 293
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 97/235 (41%), Gaps = 59/235 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G+ +++ L + + + E+F + G V++V + D ++ Q +GF+ F E
Sbjct: 185 GDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQ-FGFVSFETHE 243
Query: 88 DADYAIKIMNMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLD 130
A+ ++ ++ + GK I R K + Q L V G N+++ NLD
Sbjct: 244 CAEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQGVNLYVKNLD 303
Query: 131 PEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 190
+ + +L + F+ +G I +
Sbjct: 304 DSITDDILREHFAPYGNITSS--------------------------------------- 324
Query: 191 EIMRDPDT--GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++M D D SKGF F+ + S E + ++ M+G+ + ++P+ V+ A +KD +
Sbjct: 325 KVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPLYVALAQRKDER 379
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 124/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN + G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG IL
Sbjct: 71 TMNFEVIRGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
Q MN + L + + V S ++ ++GA
Sbjct: 130 VVCDNHGSRGFGFVHFETHEAAQQAIVTMNGMLLNDRKVFVGHFKSRREREAELGARAME 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N L ++MRD D+G+S+GF F+N+ E + ++
Sbjct: 190 FTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
M+G+ + R + V A K+
Sbjct: 249 TDMNGKEVRGRLLYVGRAQKR 269
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 117/286 (40%), Gaps = 73/286 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G I++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD--NHGSRGFGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI MN + L + + V S ++ ++GA NI++ NL +VDE+ L D
Sbjct: 150 AAQQAIVTMNGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVDEQGLQD 209
Query: 141 TFSAFGVILQTPKIMN-----------------------MIKLYGKPIR--------VNK 169
FS FG +L K+M + + GK +R K
Sbjct: 210 LFSQFGKMLSV-KVMRDDSGHSRGFGFVNFEKHEEAQKAVTDMNGKEVRGRLLYVGRAQK 268
Query: 170 ASSHQKNLDV--------------GANIFIGNLDPEI----MRD--------------PD 197
Q L G N+++ NLD I +R +
Sbjct: 269 RVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRREFSPYGVITSAKVMTE 328
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 41/210 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD ++++ +++LF+Q+G V++V + +D T+ GYG++ + +DA A+
Sbjct: 18 ASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 77
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
++N L GKPIR+ + G ANIFI NLD +D K L+DTFSAFG IL
Sbjct: 78 LLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILSC-- 135
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+I DP +G SKG+ F+ + + E
Sbjct: 136 -------------------------------------KIATDP-SGQSKGYGFVQFDNEE 157
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++ +ID ++G + ++ + V +K +
Sbjct: 158 SAQNAIDKLNGMLINDKQVYVGQFLRKQER 187
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 134/330 (40%), Gaps = 82/330 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + + + F G +++ + D Q+ +GYGF++F EE A A
Sbjct: 104 GTANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQS-KGYGFVQFDNEESAQNA 162
Query: 93 IKIMNMIKLYGKPIRVNKASSHQK-----NLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
I +N + + K + V + Q+ N N+++ NL E+ L + F FG+
Sbjct: 163 IDKLNGMLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFGEFGI 222
Query: 148 ILQTPKI---------------------------MNMIKLYGKPIRVNKAS-SHQKNLDV 179
I + +N K K V KA +++ L++
Sbjct: 223 ITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYERELEL 282
Query: 180 ----------------GANIFIGNLDPEI--------------------MRDPDTGNSKG 203
G N++I NLD I MRDP +G S+G
Sbjct: 283 KGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDP-SGISRG 341
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL--------L 255
F+ +++ E + ++ M+G+ + ++P+ V+ A +K+ + R + ++ +
Sbjct: 342 SGFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVSMAPSV 401
Query: 256 AAQNPLSQADRP---HQLFADAPPPAPLPP 282
A + P+ P QLF PPA +PP
Sbjct: 402 APRMPMYPPGAPGLGQQLFYGQGPPAIIPP 431
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 124/276 (44%), Gaps = 56/276 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + ED + A++
Sbjct: 48 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALE 107
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 108 ELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKV 167
Query: 154 IMNMI---KLYG-----KPIRVNKASSH-------QKNLDVG------------------ 180
+ + K YG N A H +K + VG
Sbjct: 168 AQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKAN 227
Query: 181 -ANIFIGNLDPEIMRD-------------------PDTGNSKGFAFINYASFEASDASID 220
NI++ N+D ++ D D G S+GF F+NY EA+ A++D
Sbjct: 228 FTNIYVKNIDLDVSDDDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVD 287
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERL 254
A++ + + V A KK + + R A RL
Sbjct: 288 ALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARL 323
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 118/275 (42%), Gaps = 44/275 (16%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
IYV +D VS+ +LF + G + + + +D ++ +G+GF+ ++ E A A+
Sbjct: 230 NIYVKNIDLDVSDDDFRDLFEKHGDITSASIARDDQGKS-RGFGFVNYIKHEAASAAVDA 288
Query: 96 MNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N G+ + V +A H++ ++ G N++I NL+ +VD++ L
Sbjct: 289 LNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKL 348
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
D F+ FG I + + + G A+ +K+ E D D
Sbjct: 349 RDMFTPFGTITSAKVMRDAMPAAGS----EDATDEKKDETKEETEKPEEAKDESKEDSDD 404
Query: 199 ------------------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
G SKGF F+ +++ + + ++ M+ + + N+P+ V+ A +K
Sbjct: 405 KKDEKADKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIENKPLYVALAQRK 464
Query: 241 DSKGDRHGSAAERLLAAQNPLSQADRPHQLFADAP 275
D + ++ E + A+N L + Q F P
Sbjct: 465 DVRKNQ----LEATIQARNQLRMQQQQQQQFGGIP 495
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 127/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ Y ++ F +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALH 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIF+ NLD ++ K LYDT SAFG IL
Sbjct: 71 TMNFDVIKGKPLRIMWSQRDPSLRKRGVG-NIFVKNLDKSINNKALYDTVSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDVG--------------ANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L N+++ NLD +D++ L+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLW 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KAFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q PK
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALH 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEIMRDP--------------- 196
MN + GKP+R+ ++ + VG NIF+ NLD I
Sbjct: 71 TMNFDVIKGKPLRIMWSQRDPSLRKRGVG-NIFVKNLDKSINNKALYDTVSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGARAKE 189
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 126/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F ++GP++++ + +D +T Y ++ F +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQHPKDAEHALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIF+ NLD ++ K LYDT SAFG +L
Sbjct: 71 TMNFDVIKGKPLRIMWSQRDPSLRKSGVG-NIFVKNLDKSINNKALYDTVSAFGNVLSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN I L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETREAAERAIEKMNGIPLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D +G SKGF F+++ E + ++D
Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D+ ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKS-KGFGFVSFEKHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDVG--------------ANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L N+++ NLD +D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKCKFEQMKQDRITRYQVVNLYVKNLDDAIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KAFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 127/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ Y ++ F +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALH 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIF+ NLD ++ K LYDT SAFG IL
Sbjct: 71 TMNFDVIKGKPLRIMWSQRDPSLRKRGVG-NIFVKNLDKSINNKALYDTVSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDVG--------------ANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L N+++ NLD +D++ L+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLW 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KAFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q PK
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALH 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEIMRDP--------------- 196
MN + GKP+R+ ++ + VG NIF+ NLD I
Sbjct: 71 TMNFDVIKGKPLRIMWSQRDPSLRKRGVG-NIFVKNLDKSINNKALYDTVSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGARAKE 189
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 124/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NL+ +D K LYDTFS FG IL
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVG-NVFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 153 --------------------------KIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V S ++ ++GA
Sbjct: 130 VVCDDHGSRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N L ++MRD D+G+S+GF F+N+ E + ++
Sbjct: 190 FTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
M+G+ + R + V A K+
Sbjct: 249 TDMNGKEVSGRLLYVGRAQKR 269
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 138/345 (40%), Gaps = 81/345 (23%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G +++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI+ MN + L + + V S ++ ++GA NI++ NL +VDE+ L D
Sbjct: 150 AAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQD 209
Query: 141 TFSAFGVILQTPKIMN-----------------------MIKLYGKPI--------RVNK 169
FS FG IL K+M + + GK + R K
Sbjct: 210 LFSQFGKILSV-KVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQK 268
Query: 170 ASSHQKNLDV--------------GANIFIGNLDPEI----MRD--------------PD 197
Q L G N+++ NLD I +R +
Sbjct: 269 RVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTE 328
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK----GDRHGSAAER 253
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + +++
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYIQRLST 388
Query: 254 LLAAQNP-LSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPP 297
+ A +P L +P F P P PP P G P PP
Sbjct: 389 MRALGSPLLGSLQQPTSYFL---PAVPQPPAQSPYYASGPPVQPP 430
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 41/210 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD ++++ +++LF+Q+G V++V + +D T+ GYG++ + +DA A+
Sbjct: 18 ASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 77
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
++N L GKPIR+ + G ANIFI NLD +D K L+DTFSAFG IL
Sbjct: 78 LLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILSC-- 135
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+I DP +G SKG+ F+ + + E
Sbjct: 136 -------------------------------------KIATDP-SGQSKGYGFVQFDNEE 157
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++ +ID ++G + ++ + V +K +
Sbjct: 158 SAQNAIDKLNGMLINDKQVYVGQFLRKQER 187
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 134/330 (40%), Gaps = 82/330 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + + + F G +++ + D Q+ +GYGF++F EE A A
Sbjct: 104 GTANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQS-KGYGFVQFDNEESAQNA 162
Query: 93 IKIMNMIKLYGKPIRVNKASSHQK-----NLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
I +N + + K + V + Q+ N N+++ NL E+ L + F FG+
Sbjct: 163 IDKLNGMLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFGEFGI 222
Query: 148 ILQTPKI---------------------------MNMIKLYGKPIRVNKAS-SHQKNLDV 179
I + +N K K V KA +++ L++
Sbjct: 223 ITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYERELEL 282
Query: 180 ----------------GANIFIGNLDPEI--------------------MRDPDTGNSKG 203
G N++I NLD I MRDP +G S+G
Sbjct: 283 KGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDP-SGISRG 341
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL--------L 255
F+ +++ E + ++ M+G+ + ++P+ V+ A +K+ + R + ++ +
Sbjct: 342 SGFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVSMAPSV 401
Query: 256 AAQNPLSQADRP---HQLFADAPPPAPLPP 282
A + P+ P QLF PPA +PP
Sbjct: 402 APRMPMYPPGAPGLGQQLFYGQGPPAIIPP 431
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 125/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG IL
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V S ++ +++GA
Sbjct: 130 VVCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAME 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N L ++MRD D+G+S+GF F+N+ E + ++
Sbjct: 190 FTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
M+G+ + R + V A K+
Sbjct: 249 VNMNGREVSGRLLYVGRAQKR 269
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 119/286 (41%), Gaps = 73/286 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G I++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI MN + L + + V S ++ +++GA NI++ NL +VDE+ L D
Sbjct: 150 AAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQD 209
Query: 141 TFSAFGVILQTPKIMN-----------------------MIKLYGKPI--------RVNK 169
FS FG +L K+M ++ + G+ + R K
Sbjct: 210 LFSQFGKMLSV-KVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQK 268
Query: 170 ASSHQKNLDV--------------GANIFIGNLDPEI----MRD--------------PD 197
Q L G N+++ NLD I +R +
Sbjct: 269 RVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE 328
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 127/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+P+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E +++ D+G SKGF F+++ E + ++D
Sbjct: 190 FTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ + + + V A KK
Sbjct: 250 EMNGKEMNGKQVYVGRAQKK 269
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+Y+ + + + + E+F + GP +++ + D ++ +G+GF+ F EDA A+
Sbjct: 191 TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKS-KGFGFVSFERHEDAQRAVD 249
Query: 95 IMNMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKL 137
MN ++ GK + R K Q L G N+++ NLD +D++
Sbjct: 250 EMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDER 309
Query: 138 LYDTFSAFGVILQTPKIM 155
L FS FG I +M
Sbjct: 310 LRKEFSPFGTITSAKVMM 327
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTP-------K 153
A++++G+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + G+P+R+ ++ + VG NIFI NLD I + D
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKE 189
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 41/210 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG L+ VS++ ++ELF Q+G VV+V + +D ++ GY ++ F DA A++
Sbjct: 46 TSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARALE 105
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
++N L KPIRV ++ + G ANIFI NLD +D K L++TFS+FG IL
Sbjct: 106 VLNFAVLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCKV 165
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
M+ + G SKGF F+ Y E
Sbjct: 166 AMD----------------------------------------EAGQSKGFGFVQYEKEE 185
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
A+ +I +++G + ++P+ V +K +
Sbjct: 186 AAQNAIKSLNGMLINDKPVFVGPFLRKQER 215
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 130/330 (39%), Gaps = 80/330 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + + E F G +++ + D Q+ +G+GF+++ EE A A
Sbjct: 132 GSANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAMDEAGQS-KGFGFVQYEKEEAAQNA 190
Query: 93 IKIMNMIKLYGKPIRV-----NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
IK +N + + KP+ V + H + N+F+ NL ++ L F +G
Sbjct: 191 IKSLNGMLINDKPVFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKVFGEYGS 250
Query: 148 ILQTPKIMNM----------------------IKLYGKPI--------RVNKASSHQKNL 177
I ++ M +L GK I R K S + L
Sbjct: 251 ITSAVVMIGMDGKSRCFGFINFENPDAASRAVQELNGKKINDKEWYVGRAQKKSEREMEL 310
Query: 178 DV--------------GANIFIGNLDPEI--------------------MRDPDTGNSKG 203
G N+++ NLD I MRD G SKG
Sbjct: 311 KRRFEQSLKDAADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSYKVMRD-QNGLSKG 369
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL--------- 254
F+ +++ E + ++ M+G+ + +P+ V++A +K+ + + ++
Sbjct: 370 SGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMRPAVPMTPT 429
Query: 255 LAAQNPLSQADRPHQLFADAPPPAPLPPPP 284
LA + P+ P QLF PPA +PP P
Sbjct: 430 LAPRLPMYPPMAPQQLFYGQAPPAMIPPQP 459
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 120/263 (45%), Gaps = 54/263 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ D + A++
Sbjct: 49 ASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 108
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + +P R+ + G NIFI NLD +D K L+DTF+AFG +L
Sbjct: 109 QLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGTVLSCKV 168
Query: 153 --------------------------KIMNMIKLYGKPI-------RVNKASSHQKNLDV 179
K +N + L K + R + S ++
Sbjct: 169 ATDETGRSKGYGFVHYETAEAAENAIKAVNGMLLNDKKVYVGHHISRKERQSKLEEMRAQ 228
Query: 180 GANIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
N+++ NLDPE+ +D + G SKGF F+N+ + + + ++D
Sbjct: 229 FTNLYVKNLDPEVTQDEFIELFKKYGNVTSAVISVDEEGKSKGFGFVNFETHDEAQKAVD 288
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
++ L + + VS A KK +
Sbjct: 289 ELNDFELKGKKLFVSRAQKKAER 311
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 116/282 (41%), Gaps = 73/282 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD+ + + + F G V++ + D T +GYGF+ + E A+ A
Sbjct: 135 GQGNIFIKNLDEAIDNKALHDTFAAFGTVLSCKVATDE-TGRSKGYGFVHYETAEAAENA 193
Query: 93 IKIMNMIKLYGKPI-------RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
IK +N + L K + R + S ++ N+++ NLDPEV + + F +
Sbjct: 194 IKAVNGMLLNDKKVYVGHHISRKERQSKLEEMRAQFTNLYVKNLDPEVTQDEFIELFKKY 253
Query: 146 GVIL---------------------------QTPKIMNMIKLYGKPIRVNKA-------- 170
G + + +N +L GK + V++A
Sbjct: 254 GNVTSAVISVDEEGKSKGFGFVNFETHDEAQKAVDELNDFELKGKKLFVSRAQKKAEREE 313
Query: 171 ----SSHQKNLD-----VGANIFIGNLDPE--------------------IMRDPDTGNS 201
S Q L+ G N++I NL+ + +MRD + G S
Sbjct: 314 ELRRSYEQAKLEKLSKYQGVNLYIKNLEDDVDDDKLRAEFEPFGTITSCKVMRD-EKGQS 372
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
KGF F+ ++S + + ++ M+ + + +P+ VS A +++ +
Sbjct: 373 KGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVR 414
>gi|290981403|ref|XP_002673420.1| polyadenylate binding protein [Naegleria gruberi]
gi|284087003|gb|EFC40676.1| polyadenylate binding protein [Naegleria gruberi]
Length = 571
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 124/272 (45%), Gaps = 65/272 (23%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L +++SE L+++LF + GP++++ + +D +T+ GY ++ F +DA+ A+
Sbjct: 6 ASLYVGDLHEEISEALLFDLFHEVGPIISIRICRDAMTRKSLGYAYVNFQNPQDAERALD 65
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + G PIR+ + G NIFI NLD +D K LYDTFSAFG IL
Sbjct: 66 TLNYASVKGIPIRIMWSQRDPSIRKSGIGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 125
Query: 153 -----------------------------------KIMNMIKLYGKPIRVN---KASSHQ 174
KI M+ L GK + V K +
Sbjct: 126 CQATKKGDNGGDNVESAGYGFVHFETQEAAEKAIAKINGML-LNGKQVFVGPFVKKTERL 184
Query: 175 K---NLDVGANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYAS 211
K N D NI++ NLD +MR + G SK F FIN+A
Sbjct: 185 KILSNEDSFTNIYVKNLDASVDEKELSEVFSKFGEIQNAVVMRG-ENGASKEFGFINFAD 243
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++ +ID M+ + N+ + V A KK+ +
Sbjct: 244 HASALIAIDEMNEKDFKNKKLFVGRAQKKNER 275
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 86/223 (38%), Gaps = 59/223 (26%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D IYV LD V E + E+F + G + N + + + + +GFI F A
Sbjct: 191 DSFTNIYVKNLDASVDEKELSEVFSKFGEIQNAVVMRGENGASKE-FGFINFADHASALI 249
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQK-----------------NLDVGANIFIGNLDPEVD 134
AI MN K + V +A + N G N+++ NLD VD
Sbjct: 250 AIDEMNEKDFKNKKLFVGRAQKKNERRAKLKEYFQKLKQEKVNKYKGLNLYVKNLDDSVD 309
Query: 135 EKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMR 194
++ L FS FG I + K+M+
Sbjct: 310 DERLRQEFSKFGDIT-SAKVMS-------------------------------------- 330
Query: 195 DPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
D S+GF F+ + + EA++ ++ M G + ++P+ V++A
Sbjct: 331 --DNKQSRGFGFVCFKTPEAANKALTEMSGHMIGSKPLYVNFA 371
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 43/222 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLFEKFSSAGPVLSIRVCRDMITKRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN L GKPIR+ ++ + VG N+FI NLD +D K +YDTFS FG IL
Sbjct: 71 TMNYDPLKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTFSTFGNILSC- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D ++G SKG+ F+++ +
Sbjct: 129 --------------------------------------KVAQD-ESGTSKGYGFVHFETE 149
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
EA++ SID ++G L + + V + + G A+R
Sbjct: 150 EAANKSIDKVNGMLLNGKRVFVGKFIPRKEREKELGEKAKRF 191
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 118/282 (41%), Gaps = 73/282 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + M++ F G +++ + +D + T +GYGF+ F EE A+ +
Sbjct: 97 GVGNVFIKNLDKSIDNKAMYDTFSTFGNILSCKVAQDE-SGTSKGYGFVHFETEEAANKS 155
Query: 93 IKIMNMIKLYGKPIRVNK---ASSHQKNLDVGA----NIFIGNLDPEVDEKLLYDTFSAF 145
I +N + L GK + V K +K L A N+++ N + + LL + F +
Sbjct: 156 IDKVNGMLLNGKRVFVGKFIPRKEREKELGEKAKRFTNVYVKNFGEDFSDDLLREMFEKY 215
Query: 146 GVILQTPKIMN-----------------------MIKLYGKPI---------RVNKASSH 173
G I + K+M+ + L GK I R K +
Sbjct: 216 GRIT-SHKVMSKDDGKSKGFGFVAFEDPEAAEKAVASLNGKEIVEGKPLFVGRAQKKAER 274
Query: 174 QKNLDV--------------GANIFIGNLDPEI----MRDPDT--------------GNS 201
Q+ L G N+++ N+D I +R T G S
Sbjct: 275 QQELKRKFEQLKMERLSRYQGVNLYVKNIDDNIDDERLRKEFTPFGTITSAKVMLEDGRS 334
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
KGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 KGFGFVCFSSAEEATKAVTEMNGRIVGSKPLYVALAQRKEDR 376
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 110/222 (49%), Gaps = 43/222 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD ++E +++E F +GPV+++ + +D VT+ GY ++ F DA+ A+
Sbjct: 12 ASLYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 71
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 72 TMNFDTIKGKPMRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAIYDTFSAFGNILSC- 129
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D +TG+SKGF F+++ +
Sbjct: 130 --------------------------------------KVAQD-ETGSSKGFGFVHFETQ 150
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
EA+D ++ ++G L + + V + + G A +R
Sbjct: 151 EAADEAMAKVNGMMLNGKKVYVGRFVPRSERLAAMGEAQKRF 192
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/311 (21%), Positives = 127/311 (40%), Gaps = 77/311 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + +D T + +G+GF+ F +E AD A
Sbjct: 98 GVGNVFIKNLDKSIDNKAIYDTFSAFGNILSCKVAQDE-TGSSKGFGFVHFETQEAADEA 156
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG-------ANIFIGNLDPEVDEKLLYDTFSAF 145
+ +N + L GK + V + + L NI++ N + D+ L D F +
Sbjct: 157 MAKVNGMMLNGKKVYVGRFVPRSERLAAMGEAQKRFTNIYVKNFGDKWDDDKLRDFFEKY 216
Query: 146 GVILQTPKIMN---------MIKLYGKPIRVNKASSHQKNLDV----------------- 179
G ++ + K+M Y +P KA +++V
Sbjct: 217 GKVV-SAKVMTDDMGHSRGFGFVSYEEPDSAGKACEEMNDMEVDDGRRIYVGRAQKKAER 275
Query: 180 --------------------GANIFIGNLDP----EIMRD--------------PDTGNS 201
G N+++ NLD EI+R + G S
Sbjct: 276 QAELKAKFEKIKQERIQRYQGVNLYVKNLDSTIDEEILRKEFSQFGTITSSKVMTENGRS 335
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK-DSKGDRHGSAAERLLAAQNP 260
KGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K D K +R+ + P
Sbjct: 336 KGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQRKEDRKAQLASQYMQRMAGMRMP 395
Query: 261 LSQADRPHQLF 271
A +P+Q+F
Sbjct: 396 ---APQPNQMF 403
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 125/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E ++++ F +GP++++ + +D +T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADAECALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG NIFI N+D +D K LYDTFSAFG IL
Sbjct: 71 TMNYDVIKGRPIRIMWSQRDPGLRKSGVG-NIFIKNMDESIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V S ++ ++G+
Sbjct: 130 VVCDERGSKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGHFKSRKEREEELGSKALK 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
NI+I N L +M+D + G S+GF F+N+A E + ++
Sbjct: 190 FTNIYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKD-ERGRSRGFGFVNFAHHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ L + I V A K+
Sbjct: 249 DEMNGKELNGKVIYVGRAQKR 269
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/281 (20%), Positives = 112/281 (39%), Gaps = 69/281 (24%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IY+ + ++ + E+F G ++V + KD ++ +G+GF+ F EDA A+ M
Sbjct: 193 IYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKDERGRS-RGFGFVNFAHHEDAQKAVDEM 251
Query: 97 NMIKLYGKPIRVNKASSHQKNLDV--------------------GANIFIGNLDPEVDEK 136
N +L GK I V +A QK L+ G N+++ NLD +D++
Sbjct: 252 NGKELNGKVIYVGRA---QKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDSIDDE 308
Query: 137 LLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196
L F+ +G I + K+M
Sbjct: 309 RLRKEFAPYGTIT-SAKVMT---------------------------------------- 327
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK----GDRHGSAAE 252
D S+GF F+ ++S E + ++ M+G+ + +P+ V+ A +++ + +++
Sbjct: 328 DGPQSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQRLA 387
Query: 253 RLLAAQNPLSQADRPHQLFADAPPPAPLPPPPPPINIMGLP 293
L +P+ + + + P P P + LP
Sbjct: 388 TLRTMTSPIIDSYQQAGYYMTVPQPRSFYSPNAVSTMRALP 428
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 49/178 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY FS G I+ Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADAECALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + G+PIR+ ++ + VG NIFI N+D I + D
Sbjct: 71 TMNYDVIKGRPIRIMWSQRDPGLRKSGVG-NIFIKNMDESIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA 251
D SKG+ F+++ + EA++ +I+ M+G L +R + V + + + + GS A
Sbjct: 130 VVCDERGSKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGHFKSRKEREEELGSKA 187
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 124/277 (44%), Gaps = 64/277 (23%)
Query: 28 GESGDGDA----TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
G DG+A ++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ +
Sbjct: 68 GTPSDGNAPKNTSLYVGELDPSVTEAMLFEIFSTVGPVASIRVCRDAVTRQSLGYAYVNY 127
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTF 142
+D + A++ +N + G+ R+ + G NIFI NLDP +D K L+DTF
Sbjct: 128 HNADDGEKALEELNYSLIKGRACRIMWSQRDPSLRKTGTGNIFIKNLDPAIDNKALHDTF 187
Query: 143 SAFGVILQTP--------------------------------KIMNMIKLY-----GKPI 165
SAFG IL ++N K+Y +
Sbjct: 188 SAFGTILSCKVALDEYGNSKGYGFVHFASIDSANAAIEHVNGMLLNDKKVYVGHHVSRRD 247
Query: 166 RVNKASSHQKNLDVGANIFIGNLDPEIMRDP-------------------DTGNSKGFAF 206
R +K + + N N++I N+DPE+ + ++G +GF F
Sbjct: 248 RQSKFEAMKANF---TNVYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDESGKPRGFGF 304
Query: 207 INYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+N+ S EA+ ++D M+ + + V A K+ +
Sbjct: 305 VNFESHEAAQKAVDEMNDYEFHGKKLYVGRAQKRHER 341
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 97/224 (43%), Gaps = 58/224 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ +D +V++ LF + G + + + KD + +G+GF+ F E A A+ M
Sbjct: 262 VYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDESGKP-RGFGFVNFESHEAAQKAVDEM 320
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N + +GK + V +A H++ ++ G N+FI NL EVD+ LL
Sbjct: 321 NDYEFHGKKLYVGRAQKRHEREAELRKRYEQMKLEKMSKYQGVNLFIKNLSDEVDDNLLK 380
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FSAFG I ++M D + G
Sbjct: 381 TEFSAFGTITSA---------------------------------------KVMTD-ENG 400
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ Y+S E + +I M+ + L +P+ V+ A +KD +
Sbjct: 401 KSKGFGFVCYSSPEEATKAIAEMNQRMLAGKPLYVALAQRKDVR 444
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 41/210 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ D + A++
Sbjct: 57 ASLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 116
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + +P R+ + G NIFI NLD ++D K L+DTF+AFG IL
Sbjct: 117 HLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNILSC-- 174
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ D + GNS+GFAF++Y + E
Sbjct: 175 -------------------------------------KVATD-ENGNSRGFAFVHYETGE 196
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
A+DA+I +++G L ++ + V + K +
Sbjct: 197 AADAAIKSVNGMLLNDKKVYVGHHISKKER 226
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 138/344 (40%), Gaps = 81/344 (23%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LDDK+ + + F G +++ + D +G+ F+ + E AD A
Sbjct: 143 GQGNIFIKNLDDKIDNKALHDTFAAFGNILSCKVATDE-NGNSRGFAFVHYETGEAADAA 201
Query: 93 IKIMNMIKLYGKPIRV-------NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
IK +N + L K + V + S ++ NIFI NL+PE +K L D F F
Sbjct: 202 IKSVNGMLLNDKKVYVGHHISKKERQSKVEEQRAKFTNIFIKNLEPEFTQKDLEDMFKPF 261
Query: 146 GVIL---------------------------QTPKIMNMIKLYGKPIRVNKASSH----- 173
G I+ + +N ++ GK + V +A
Sbjct: 262 GEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDE 321
Query: 174 -------QKNLD-----VGANIFIGNLDPE--------------------IMRDPDTGNS 201
++ L+ G N+++ N+D E +MRD D G S
Sbjct: 322 ELRRMHEERRLENESKTAGVNLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRD-DKGAS 380
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA-----AERL-L 255
+GF F+ ++ + + ++ M+G+ + +P+ VS A KK+ + S A+RL
Sbjct: 381 RGFGFVCFSQPDEATRAVQEMNGKMIGTKPLYVSLAQKKEVRRQALESQMQQRNAQRLQY 440
Query: 256 AAQNPLSQADRPHQLFADAPPPAPLPPPPPPIN--IMGLPPPPP 297
AA N L Q PP P P P+ ++G P PP
Sbjct: 441 AAANGLGGPQGYMQAPMYYPPMGPYGGPMMPVRGGVVGYPGAPP 484
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 119/260 (45%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L +V+E +++E F +GP++++ + +D VT GY ++ F DA+ +
Sbjct: 110 ASLYVGDLHHEVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLADAERVMT 169
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
MN+ + GKP+R+ + G N+F+ NL+ ++ K LYD FS+FG IL
Sbjct: 170 DMNLYIIKGKPVRLMWSQRDPSLRKSGIGNVFVKNLEKSINNKSLYDAFSSFGNILSCKV 229
Query: 154 I--------------------------MNMIKLYGKPIRVNKASSHQ-KNLDVGA----- 181
I MN I L I V S + + ++GA
Sbjct: 230 ITDDNGSKGYGFVHFEHRESAERAIQKMNGILLNDLKIFVGHFKSRKDRESELGAQTREF 289
Query: 182 -NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASID 220
N++I N L ++MRD D G SKGF F+N+ E + +ID
Sbjct: 290 TNVYIKNFGEDMDEDRLSKIFEKFGPTLSVKVMRD-DCGRSKGFGFVNFQKHEDAQNAID 348
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L R I A KK
Sbjct: 349 NMNGKELNGRQIYAGRAQKK 368
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + E + ++F + GP ++V + +D ++ +G+GF+ F EDA AI M
Sbjct: 292 VYIKNFGEDMDEDRLSKIFEKFGPTLSVKVMRDDCGRS-KGFGFVNFQKHEDAQNAIDNM 350
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L G+ I R K Q L G N++I NLD ++D++ L
Sbjct: 351 NGKELNGRQIYAGRAQKKLERQTQLQRHFEQLKQNRIVRYQGVNLYIKNLDDDIDDENLR 410
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS+FG I +MN G
Sbjct: 411 KEFSSFGTITSAKVMMN-----------------------------------------NG 429
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ +++ E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 430 RSKGFGFVCFSAPEEATTAVTEMNGRLVASKPLYVALAQRKEER 473
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 41/210 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ D + A++
Sbjct: 57 ASLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 116
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + +P R+ + G NIFI NLD ++D K L+DTF+AFG IL
Sbjct: 117 HLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNILSC-- 174
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ D + GNS+GFAF++Y + E
Sbjct: 175 -------------------------------------KVATD-ENGNSRGFAFVHYETGE 196
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
A+DA+I +++G L ++ + V + K +
Sbjct: 197 AADAAIKSVNGMLLNDKKVYVGHHISKKER 226
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 138/344 (40%), Gaps = 81/344 (23%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LDDK+ + + F G +++ + D +G+ F+ + E AD A
Sbjct: 143 GQGNIFIKNLDDKIDNKALHDTFAAFGNILSCKVATDE-NGNSRGFAFVHYETGEAADAA 201
Query: 93 IKIMNMIKLYGKPIRV-------NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
IK +N + L K + V + S ++ NIFI NL+PE +K L D F F
Sbjct: 202 IKSVNGMLLNDKKVYVGHHISKKERQSKVEEQRAKFTNIFIKNLEPEFTQKDLEDMFKPF 261
Query: 146 GVIL---------------------------QTPKIMNMIKLYGKPIRVNKASSH----- 173
G I+ + +N ++ GK + V +A
Sbjct: 262 GEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDE 321
Query: 174 -------QKNLD-----VGANIFIGNLDPE--------------------IMRDPDTGNS 201
++ L+ G N+++ N+D E +MRD D G S
Sbjct: 322 ELRRMHEERRLENESKTAGVNLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRD-DKGAS 380
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA-----AERL-L 255
+GF F+ ++ + + ++ M+G+ + +P+ VS A KK+ + S A+RL
Sbjct: 381 RGFGFVCFSQPDEATRAVQEMNGKMIGTKPLYVSLAQKKEVRRQALESQMQQRNAQRLQY 440
Query: 256 AAQNPLSQADRPHQLFADAPPPAPLPPPPPPIN--IMGLPPPPP 297
AA N L Q PP P P P+ ++G P PP
Sbjct: 441 AAANGLGGPQGYMQAPMYYPPMGPYGGPMMPVRGGVVGYPGAPP 484
>gi|308804421|ref|XP_003079523.1| Splicing factor 3b, subunit 4 (ISS) [Ostreococcus tauri]
gi|116057978|emb|CAL54181.1| Splicing factor 3b, subunit 4 (ISS) [Ostreococcus tauri]
Length = 201
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 56/69 (81%)
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
P IMRDPDTG SKGF F+ Y SF+ASDA+IDAM GQYLCN+ I+V YAFKKDSKG+RHGS
Sbjct: 8 PSIMRDPDTGVSKGFGFVAYDSFDASDAAIDAMDGQYLCNKQINVQYAFKKDSKGERHGS 67
Query: 250 AAERLLAAQ 258
AE +A
Sbjct: 68 QAEHGASAH 76
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 127/279 (45%), Gaps = 56/279 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 48 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 107
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 108 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKV 167
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 168 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 227
Query: 182 --NIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
N++I NLD EI + G S+GF F+NY++ +++ A++D
Sbjct: 228 FTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVD 287
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
M+ + + + + V A KK + + R A RL A
Sbjct: 288 EMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKA 326
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 108/236 (45%), Gaps = 31/236 (13%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ LD ++SE ++F + G + + + +D+ ++ +G+GF+ + + A A+ M
Sbjct: 231 VYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKS-RGFGFVNYSTHDSAQAAVDEM 289
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N ++ G+ + V +A H++ ++ G N+++ NL ++D++ L
Sbjct: 290 NDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLR 349
Query: 140 DTFSAFGVILQTPKIM--NMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
+ F+ +G I + K+M I+ P + K A E D D
Sbjct: 350 EMFAPYGTIT-SAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDDQD 408
Query: 198 T----------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD +
Sbjct: 409 KENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVR 464
>gi|328773103|gb|EGF83140.1| hypothetical protein BATDEDRAFT_34010 [Batrachochytrium
dendrobatidis JAM81]
Length = 718
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 123/264 (46%), Gaps = 53/264 (20%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
+G A++Y+G L+ V+E +++E+F GPV ++ + +D VT+ GYG+I ++ DA
Sbjct: 60 TGATPASLYIGDLEPSVTEAMLFEVFNMVGPVASIRVCRDAVTRRSLGYGYINYLDIADA 119
Query: 90 DYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVI 148
+ A+ +N + G P+R+ ++ G NIFI NL +D K L+DTFSAFG I
Sbjct: 120 ERALDTLNYTTVRGNPVRIMWSNRDPALRRAGTGNIFIKNLHTTIDHKALHDTFSAFGKI 179
Query: 149 LQTPKIM--------------------NMIK------LYGKPIRV-------NKASSHQK 175
L M N IK L + + V ++S+ ++
Sbjct: 180 LSCKIAMDGERSLGHGFVHYETMEMAENAIKHVNGMLLNDQQVYVGLHISKKERSSTIEE 239
Query: 176 NLDVGANIFIGNLDPEI-------MRDP------------DTGNSKGFAFINYASFEASD 216
NI++ N+D + M P + GNSK F F+NY + E +
Sbjct: 240 KRSKFTNIYVKNIDASVDQKAFEEMFHPFGTTVSCVLMVDEEGNSKEFGFVNYENHEDAR 299
Query: 217 ASIDAMHGQYLCNRPISVSYAFKK 240
+++ MH + + + I V A KK
Sbjct: 300 RAVEEMHEKEIGGKQIYVGRAQKK 323
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 114/282 (40%), Gaps = 84/282 (29%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV +D V + E+F G V+ + D + + +GF+ + EDA A++ M
Sbjct: 247 IYVKNIDASVDQKAFEEMFHPFGTTVSCVLMVDEEGNSKE-FGFVNYENHEDARRAVEEM 305
Query: 97 NMIKLYGKPIRVNKASSHQKNLDV--------------------GANIFIGNLDPEVDEK 136
+ ++ GK I V +A QK + G N+F+ N+D +D++
Sbjct: 306 HEKEIGGKQIYVGRA---QKKFEREEELRRQYEKIREEKLSKYQGVNLFVKNIDESIDDE 362
Query: 137 LLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196
L FS FG I T +IM D
Sbjct: 363 KLRQEFSVFGAITST---------------------------------------KIMVDE 383
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLA 256
TG SKGF F+ +++ + + ++ M+ + L N+PI V+ A +K+ + + LA
Sbjct: 384 KTGISKGFGFVCFSNPDEATKAVTEMNNRMLANKPIYVALAQRKEVR--------RQQLA 435
Query: 257 AQNPLSQADRPHQLFADAPPPAPLPPPPPPINIM----GLPP 294
AQ +A R HQ +PP P +I G+PP
Sbjct: 436 AQMQ-QRAMRAHQQM--------MPPGYPGASIFYPPGGVPP 468
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 126/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +G +V++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+P+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGQPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSRGYGFVHFETHDAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARARE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E +++ ++G +GF F+++ + E + ++D
Sbjct: 190 FTNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L R + V A KK
Sbjct: 250 EMNGKELNGRIMFVGRAQKK 269
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 121/280 (43%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ F + A+ A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGYGFVHFETHDAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N ++D++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKEIFSKF 214
Query: 146 G----VILQTPKI-----------------------MNMIKLYGKPIRVNKASSH-QKNL 177
G V + T + MN +L G+ + V +A ++ +
Sbjct: 215 GNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVDEMNGKELNGRIMFVGRAQKKMERQM 274
Query: 178 DV----------------GANIFIGNL----DPEIMRDP--------------DTGNSKG 203
++ G N+++ NL D E +R + G SKG
Sbjct: 275 ELKRRFEQMKQDRTTRYQGVNLYVKNLDDGIDDERLRKEFSPFGSITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G I+ Q P
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + G+P+R+ ++ + VG NIFI NLD I + D
Sbjct: 71 TMNFDVIKGQPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D S+G+ F+++ + +A++ +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSRGYGFVHFETHDAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARARE 189
>gi|321466794|gb|EFX77787.1| polyadenylate binding protein, cytoplasmic 1 [Daphnia pulex]
Length = 574
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 123/265 (46%), Gaps = 58/265 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++V+E +++E F +GPVV++ + +D +T+ GY ++ F DA+ A+
Sbjct: 12 ASLYVGDLHNEVTEAMLFEKFSTAGPVVSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN L G+PIR+ ++ + VG NIFI NLD +D K +YDTFSAFG IL
Sbjct: 72 SMNFDVLRGRPIRIMWSQRDPSLRRSGVG-NIFIKNLDKTIDNKAMYDTFSAFGNILSCK 130
Query: 153 ----------------------------KIMNMIKLYGKPIRVNK---ASSHQKNLDVGA 181
K+ M+ L GK + V + ++ L A
Sbjct: 131 VAQDEAGNSKGYGFVHFETEESAVNAITKVNGML-LNGKKVFVGRFIPRKDRERELGEKA 189
Query: 182 ----NIFIGNLDPEI-------------------MRDPDTGNSKGFAFINYASFEASDAS 218
N++I N E + D G S+GF F+ Y +A++ +
Sbjct: 190 KYFTNVYIKNFGDEFDDEKLFECFSKYGKVTSHKVMSSDDGKSRGFGFVCYEDPDAAERA 249
Query: 219 IDAMHGQYLCNRPISVSYAFKKDSK 243
D MH + + + + V A K++ +
Sbjct: 250 CDDMHAKDMNGKTLFVGRAQKRNER 274
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/277 (19%), Positives = 107/277 (38%), Gaps = 64/277 (23%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GE +Y+ D+ + ++E F + G V + H +G+GF+ + +
Sbjct: 186 GEKAKYFTNVYIKNFGDEFDDEKLFECFSKYGKVTS-HKVMSSDDGKSRGFGFVCYEDPD 244
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQK-----------------NLDVGANIFIGNLD 130
A+ A M+ + GK + V +A + N G N+++ NLD
Sbjct: 245 AAERACDDMHAKDMNGKTLFVGRAQKRNERQTELRRKFEQMKIERLNRYQGVNLYVKNLD 304
Query: 131 PEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 190
+D++ L F+ +G I + K+M
Sbjct: 305 DTIDDERLRKEFAPYGTIT-SAKVMT---------------------------------- 329
Query: 191 EIMRDPDTGNSK-GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
+ G +K GF F+ ++S E + ++ M+G+ L ++P+ V+ A +K+ DR
Sbjct: 330 ------EGGRNKGGFGFVCFSSPEEATKAVTEMNGRILVSKPLYVALAQRKE---DRKAQ 380
Query: 250 AAERLLAAQNPLSQADRPHQLFADAPPPAPLPPPPPP 286
A + + + + + Q+F P +P P P
Sbjct: 381 LASQYMQRMAGM-RMQQMGQMFQPGGPGYFMPAPIQP 416
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 128/268 (47%), Gaps = 62/268 (23%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED---AD 90
++++YVG LD V+E ++E+F Q GPV ++ + +D VT+ GY ++ + D A+
Sbjct: 37 NSSLYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAE 96
Query: 91 YAIKIMNMIKLYGKPIRVNKASSHQ----KNLDVGANIFIGNLDPEVDEKLLYDTFSAFG 146
A+ +N L G+P+R+ SH+ + VG NIFI NLD VD K L+DTFSAFG
Sbjct: 97 RALDQLNYTPLVGRPMRI--MWSHRDPAFRKSGVG-NIFIKNLDRSVDNKALHDTFSAFG 153
Query: 147 VILQTP---------------------------KIMNMIKLYGKPIRVN---KASSHQKN 176
IL + +N + L GK + V + S +
Sbjct: 154 NILSCKVAQDLKGESKGYGFVHFEKDESARLAIEKVNGMLLEGKKVYVGPFLRRSERSSD 213
Query: 177 LDVG-ANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEAS 215
+V N+F+ NLD IMRD D G SKGF FIN+ E +
Sbjct: 214 SEVKFTNVFVKNLDEAVSDDEVKAMFAEHGTVNSCIIMRD-DEGKSKGFGFINFEEPEQA 272
Query: 216 DASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++ A++G+ + + + V A KK +
Sbjct: 273 ASAVQALNGKDVNCKELYVGRAQKKAER 300
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 111/280 (39%), Gaps = 72/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD V + + F G +++ + +D + +GYGF+ F +E A A
Sbjct: 127 GVGNIFIKNLDRSVDNKALHDTFSAFGNILSCKVAQD-LKGESKGYGFVHFEKDESARLA 185
Query: 93 IKIMNMIKLYGKPIRVN---KASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVI 148
I+ +N + L GK + V + S + +V N+F+ NLD V + + F+ G +
Sbjct: 186 IEKVNGMLLEGKKVYVGPFLRRSERSSDSEVKFTNVFVKNLDEAVSDDEVKAMFAEHGTV 245
Query: 149 --------------------LQTP------------KIMNMIKLYGKPIRVNKASSHQKN 176
+ P K +N +LY R K + +
Sbjct: 246 NSCIIMRDDEGKSKGFGFINFEEPEQAASAVQALNGKDVNCKELYVG--RAQKKAEREAM 303
Query: 177 LDV--------------GANIFIGNL----DPEIMRDP---------------DTGNSKG 203
L G N+++ NL D E +R G S+G
Sbjct: 304 LRAKFEELRSERIAKYQGMNLYVKNLHDDIDDETLRTEFSQFGTITSAKVMVDSAGKSRG 363
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ YAS E + ++ M+G+ + +PI V+ A ++D +
Sbjct: 364 FGFVCYASPEEATRAVTEMNGRMIKGKPIYVALAQRRDVR 403
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 123/267 (46%), Gaps = 60/267 (22%)
Query: 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDAD 90
G A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ D +
Sbjct: 36 GGTGASLYVGELDPSVTEAMLFEIFNIIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGE 95
Query: 91 YAIKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
A++ +N + G+P R+ + G NIFI NLD +D K L+DTF+AFG IL
Sbjct: 96 RALEHLNYSAIKGRPCRIMWSQRDPALRKTGQGNIFIKNLDESIDNKALHDTFAAFGEIL 155
Query: 150 --------------------QTPK------------IMNMIKLY-----GKPIRVNKASS 172
QT + ++N K++ GK R +KA
Sbjct: 156 SCKVGVDEDGKSRGFAFVHYQTGEAADAAIKGVDGMMLNDKKVFVGHHIGKKERQSKAEE 215
Query: 173 HQKNLDVGANIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFE 213
+ + N+F+ N+D + + G SKGF F+NY S E
Sbjct: 216 QRAHF---TNVFVKNVDLSVTEKEFEDLVSKFGETVSIALSLDEEGKSKGFGFVNYVSHE 272
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKK 240
A++ ++D ++ + + + + A K+
Sbjct: 273 AAEKAVDELNDKEVNGQKLWAGRAQKR 299
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 118/285 (41%), Gaps = 79/285 (27%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD+ + + + F G +++ + D ++ +G+ F+ + E AD A
Sbjct: 126 GQGNIFIKNLDESIDNKALHDTFAAFGEILSCKVGVDEDGKS-RGFAFVHYQTGEAADAA 184
Query: 93 IK-----IMNMIKLY-----GKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTF 142
IK ++N K++ GK R +KA + + N+F+ N+D V EK D
Sbjct: 185 IKGVDGMMLNDKKVFVGHHIGKKERQSKAEEQRAHF---TNVFVKNVDLSVTEKEFEDLV 241
Query: 143 SAFGVILQTP--------------------------------KIMNMIKLYG--KPIRVN 168
S FG + K +N KL+ RV
Sbjct: 242 SKFGETVSIALSLDEEGKSKGFGFVNYVSHEAAEKAVDELNDKEVNGQKLWAGRAQKRVE 301
Query: 169 KASSHQKNLD----------VGANIFIGNLDPE--------------------IMRDPDT 198
+ + +K ++ G N+++ NLD E +M+D +
Sbjct: 302 RDTELRKTIEEKRQEFDAKSAGVNLYVKNLDDEWDDDRLRAEFDSFGTITSCKVMKD-ER 360
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G S+ F F+ Y+S E + ++ M+G+ + ++P+ V+ A +++++
Sbjct: 361 GVSRNFGFVCYSSPEEATKAVSEMNGKMIGSKPLYVALAQRREAR 405
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 129/275 (46%), Gaps = 57/275 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+++YVG L V+E +++E F GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 SSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN + G+PIR+ ++ + VG N+FI NL+ +D K LYDTFS FG IL
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVG-NVFIKNLEDSIDSKALYDTFSTFGNILSCK 129
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
Q MN + L + + V S ++ ++GA
Sbjct: 130 VACDEHGSRGFGFVHFETNEAAQQAIGTMNGMLLNDRKVFVGHFKSQREREAELGAQALE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ NL + +MRD ++G+S+GF F+N+ E + ++
Sbjct: 190 FTNIYVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRD-NSGHSRGFGFVNFEKHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
D M+G+ + + + V A K+ + + E+L
Sbjct: 249 DHMNGKEVSGQQLYVGRAQKRAERQNELKRRFEQL 283
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 117/287 (40%), Gaps = 75/287 (26%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G +++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGVGNVFIKNLEDSIDSKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETNE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI MN + L + + V S ++ ++GA NI++ NL ++DE+ L D
Sbjct: 150 AAQQAIGTMNGMLLNDRKVFVGHFKSQREREAELGAQALEFTNIYVKNLSVDMDEQGLQD 209
Query: 141 TFSAFGVILQTPKI---------------------------MNMIKLYGKPI---RVNKA 170
F AFG +L + MN ++ G+ + R K
Sbjct: 210 LFFAFGNMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKR 269
Query: 171 SSHQKNLDV--------------GANIFIGNLD--------------------PEIMRDP 196
+ Q L G N+++ NLD ++M +
Sbjct: 270 AERQNELKRRFEQLKQDRQTRYRGVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVMTEG 329
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
D +SKGF F+ ++S E + ++ M+G + +P+ V+ A +K+ +
Sbjct: 330 D--HSKGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVALAQRKEER 374
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 129/280 (46%), Gaps = 58/280 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 55 ASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALE 114
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 115 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 174
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 175 AQDETGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 234
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N+ P+ I RDPD G S+GF F+N+ + EA+ A++
Sbjct: 235 FTNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPD-GKSRGFGFVNFTTHEAASAAV 293
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
+ ++ + + + V A KK + + R A R+ A
Sbjct: 294 EELNNKDFHGQELYVGRAQKKHEREEELRKSYEAARIEKA 333
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 66/137 (48%), Gaps = 19/137 (13%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+Y+ + V++ LF G V + + +D ++ +G+GF+ F E A A++
Sbjct: 237 NVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPDGKS-RGFGFVNFTTHEAASAAVEE 295
Query: 96 MNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N +G+ + V +A H++ ++ G N++I NLD +VD++ L
Sbjct: 296 LNNKDFHGQELYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDEKL 355
Query: 139 YDTFSAFGVILQTPKIM 155
F+ FG I + K+M
Sbjct: 356 RTMFTEFGPIT-SAKVM 371
>gi|366989575|ref|XP_003674555.1| hypothetical protein NCAS_0B00950 [Naumovozyma castellii CBS 4309]
gi|342300419|emb|CCC68179.1| hypothetical protein NCAS_0B00950 [Naumovozyma castellii CBS 4309]
Length = 219
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 58/240 (24%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ T+YVG +D KV++ ++ELF+Q P+ + PKD++ Q HQGY FIEF +D Y I
Sbjct: 9 ETTVYVGNIDPKVTKEQLYELFIQVSPISKLRYPKDKILQMHQGYAFIEFYTAKDVQYVI 68
Query: 94 KIM-NMIKLYGKPIRVNKA------------SSHQKNLDVG---ANIFIGNLDPEVDEKL 137
++M N + LY + ++V ++ +S N + A +F+ NLD ++
Sbjct: 69 QVMNNTVALYDRFLKVRQSVQNPTSSMGGANTSENSNQSIVLPIAKLFVKNLDESIENPQ 128
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L F FG + + P+I F+ N
Sbjct: 129 LIKLFQKFGPLFKDPEIF----------------------------FLSN---------- 150
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS--KGDRHGSAAERLL 255
G + A+I + +E SD +I ++ + + N+ I+V YAFK+++ K ++G +RLL
Sbjct: 151 -GKLRC-AYIYFKFYENSDMAIAKLNNELIVNKRINVDYAFKENTSNKNAKYGDDVDRLL 208
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 102/201 (50%), Gaps = 41/201 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ F D + A++
Sbjct: 44 ASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERALE 103
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + GKP R+ + G+ N+FI NLDP +D K L+DTFSAFG IL
Sbjct: 104 SLNYTLIKGKPCRIMWSQRDPSLRKTGSGNVFIKNLDPSIDNKALHDTFSAFGNIL---- 159
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
S + LD ++GNSKG+ F++Y + E
Sbjct: 160 ------------------SCKIALD------------------ESGNSKGYGFVHYETEE 183
Query: 214 ASDASIDAMHGQYLCNRPISV 234
A+D +I ++G L ++ + V
Sbjct: 184 AADNAIKHVNGMLLNDKKVYV 204
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 58/222 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV LD+ V + E+ + GP+ + + D ++ +G+GF+ F EDA A+ +
Sbjct: 227 VYVKNLDESVKDEEFNEMLAKFGPITSALVQTDDEGKS-KGFGFVNFENHEDAQKAVDAL 285
Query: 97 NMIKLYGKPIRVNKASS------------HQKNLDV-----GANIFIGNLDPEVDEKLLY 139
N + GK + V +A Q L+ G N++I NLD ++D++ L
Sbjct: 286 NETEHKGKILYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDEKLR 345
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS +GVI + K+M + DT
Sbjct: 346 QEFSVYGVIT-SAKVM-------------------------------------CDEKDT- 366
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
SKGF F+ ++S + + ++ M+G+ + ++PI V+ A +K+
Sbjct: 367 -SKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVALAQRKE 407
>gi|30695647|ref|NP_849806.1| oligouridylate-binding protein 1A [Arabidopsis thaliana]
gi|332194923|gb|AEE33044.1| oligouridylate-binding protein 1A [Arabidopsis thaliana]
Length = 430
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 116/234 (49%), Gaps = 42/234 (17%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++Y G + +V+E L+ E+F +GP+ + + + + YGF+ + A AI
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKL----IRKDKSSYGFVHYFDRRCASMAIMT 119
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N ++G+P++VN A + + D + NIF+G+L PEV + L+D+FSAF
Sbjct: 120 LNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAF-------- 171
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
N SS+ + D +M D TG S+GF F+++ + +
Sbjct: 172 --------------NSCSSYYR-------------DARVMWDQKTGRSRGFGFVSFRNQQ 204
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKG-DRHGSAAERLLAAQNPLSQADR 266
+ +I+ M+G+++ +R I ++A K + G D+H S + ++ N S+ R
Sbjct: 205 DAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGR 258
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 125/274 (45%), Gaps = 56/274 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ D + A++
Sbjct: 46 ASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 105
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + +P R+ + G NIFI NLD ++D K L+DTF+AFG +L
Sbjct: 106 QLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKV 165
Query: 153 --------------------------KIMNMIKLYGKPIRVNKASS---HQKNLDVG--- 180
K +N + L K + V S Q +D
Sbjct: 166 ATDEHGNSKGYGFVHYETAEAAENAIKNVNGMLLNDKKVYVGHHISRKERQSKIDEMKAQ 225
Query: 181 -ANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N+DPE I RD + G S+GF F+NY + E + ++
Sbjct: 226 FTNLYIKNIDPEVTDEEFEALFREQGNVTSSVIQRDEE-GRSRGFGFVNYETHEEAQKAV 284
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
D ++ + R + VS A KK + + A E+
Sbjct: 285 DNLNDKDFHGRKLFVSRAQKKAEREEELRKAHEQ 318
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 100/224 (44%), Gaps = 58/224 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ +D +V++ LF + G V + + +D ++ +G+GF+ + E+A A+ +
Sbjct: 229 LYIKNIDPEVTDEEFEALFREQGNVTSSVIQRDEEGRS-RGFGFVNYETHEEAQKAVDNL 287
Query: 97 NMIKLYGKPIRVNKA------------SSHQKNLDV-----GANIFIGNLDPEVDEKLLY 139
N +G+ + V++A + Q L+ G N+++ NLD +VD++ L
Sbjct: 288 NDKDFHGRKLFVSRAQKKAEREEELRKAHEQARLEKLSKYQGLNLYVKNLDDDVDDEKLR 347
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
F FG I ++MRD D G
Sbjct: 348 AEFEPFGTITSA---------------------------------------KVMRD-DKG 367
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ Y+S E + ++ M+ + + ++P+ VS+A +++ +
Sbjct: 368 VSKGFGFVCYSSPEEASKAVAEMNNKMIGSKPLYVSHAQRREVR 411
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 121/267 (45%), Gaps = 61/267 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 58 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 117
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 118 DLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 177
Query: 153 -------------------------------KIMNMIKLY-----GKPIRVNKASSHQKN 176
++N K++ K R +K + N
Sbjct: 178 AQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKAN 237
Query: 177 LDVGANIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASD 216
NI++ N++ ++ RD +TG S+GF F+N++ EA+
Sbjct: 238 F---TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAAS 294
Query: 217 ASIDAMHGQYLCNRPISVSYAFKKDSK 243
A+++A++ L + + V A KK +
Sbjct: 295 AAVEALNEYELKGQKLYVGRAQKKHER 321
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 111/263 (42%), Gaps = 40/263 (15%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV ++ V++ LF + G + + + +D T +G+GF+ F E A A++ +
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEAL 300
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N +L G+ + V +A H++ ++ G N++I NL ++D++ L
Sbjct: 301 NEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 360
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVG------------------- 180
+ FS++G I + I K + +K + G
Sbjct: 361 ELFSSYGNITSAKVMREAIVDVPAETEKGKEADKEKAKEAGDKSEEKGESKSESEDKSKS 420
Query: 181 ANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
G + G SKGF F+ +++ + + ++ M+ + + +P+ V+ A +K
Sbjct: 421 EEKSEGKTESAKPEKRHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRK 480
Query: 241 DSKGDRHGSAAERLLAAQNPLSQ 263
D + S E + A+N + Q
Sbjct: 481 DVR----KSQLEASIQARNTIRQ 499
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 124/266 (46%), Gaps = 57/266 (21%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
SG A++YVG L V+E L++E F GP++++ + +D T+ GY +I F DA
Sbjct: 6 SGYPLASLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 90 DYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
+ A+ MN + G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG
Sbjct: 66 ERALDTMNFEMIKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEASIDNKALYDTFSTFGN 124
Query: 148 ILQTP--------------------------KIMNMIKLYGKPIRVNK-ASSHQKNLDVG 180
IL MN + L + V S ++ +++G
Sbjct: 125 ILSCKVACDEHGSRGFGFVHFETHEAAQHAINTMNGMLLNDHKVFVGHFKSRREREVELG 184
Query: 181 A------NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEA 214
A NI++ NL + +MRD +G+S+GF F+N+ + E
Sbjct: 185 ARAMEFTNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRD-SSGHSRGFGFVNFETHEE 243
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKK 240
+ ++ M+G+ + R + V A K+
Sbjct: 244 AQKAVVHMNGKEVSGRLLYVGRAQKR 269
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 79/357 (22%), Positives = 140/357 (39%), Gaps = 88/357 (24%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G I++ L+ + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGVGNIFIKNLEASIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A +AI MN + L + V S ++ +++GA NI++ NL +VDE+ L +
Sbjct: 150 AAQHAINTMNGMLLNDHKVFVGHFKSRREREVELGARAMEFTNIYVKNLQADVDEQGLQE 209
Query: 141 TFSAFGVILQTPKIMN-----------------------MIKLYGKPI--------RVNK 169
FS FG +L K+M ++ + GK + R K
Sbjct: 210 LFSQFGKMLSV-KVMRDSSGHSRGFGFVNFETHEEAQKAVVHMNGKEVSGRLLYVGRAQK 268
Query: 170 ASSHQKNLDV--------------GANIFIGNLDPEI----MRD--------------PD 197
Q L G N+++ NLD I +R +
Sbjct: 269 RVERQNELKRRFEQMKQDRMNRYQGVNLYVKNLDDSIDDEKLRKEFSPYGMITSAKVMTE 328
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK----GDRHGSAAER 253
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + +++
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLST 388
Query: 254 LLAAQNP-LSQADRPHQLFADAPPPAP----------LPPPPPPINIMGLPPPPPSG 299
+ A +P L +P F A P P +PPP P PP S
Sbjct: 389 MRALGSPFLGSFQQPTSYFLPAVPQPPGQAAYYGSSSMPPPQPAPRWTSQPPRSSSA 445
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 121/264 (45%), Gaps = 55/264 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 120
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 121 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 180
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 181 AQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKAN 240
Query: 182 --NIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASDASI 219
NI++ N++PE+ RD +TG S+GF F+N+ S E + ++
Sbjct: 241 FTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAV 300
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
++ + + + V A KK +
Sbjct: 301 QELNEKEFHGQNLYVGRAQKKHER 324
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 132/292 (45%), Gaps = 36/292 (12%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
IYV ++ +V++ LF + G V + + +D+ T +G+GF+ F EDA A++
Sbjct: 243 NIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQE 302
Query: 96 MNMIKLYGKPIRVNKAS-SHQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N + +G+ + V +A H++ ++ G N++I NLD EVD++ L
Sbjct: 303 LNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKL 362
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIG-NLDPEIMRDPD 197
FS FG I + + I G+ + +KN + G + PE D
Sbjct: 363 RQLFSEFGPITSAKVMRDSITEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGED 422
Query: 198 ------TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA 251
G SKGF F+ +A+ + + ++ M+ + + N+P+ V+ A +KD + ++
Sbjct: 423 SKSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQ----L 478
Query: 252 ERLLAAQNPLSQADRPH-----QLFADAP---PPAPLPPPPPPINIMGLPPP 295
E+ + A+N L Q + AP P P PP G+P P
Sbjct: 479 EQSIQARNQLRMQQAAAAAGMPQQYMQAPVFYGPGSQPGFMPPAGGRGMPYP 530
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 125/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L++ F +GPV+++ + +D++T+ GY ++ F+ DA A+
Sbjct: 287 ASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQKALD 346
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K LY+ FSAFG IL +
Sbjct: 347 TMNFDVIQGKSIRLMWSQRDAYLRRSGIG-NVFIKNLDKSIDNKTLYEHFSAFGRILSSK 405
Query: 153 KI--------------------------MNMIKLYGKPIRVNKASSHQ-------KNLDV 179
+ MN L G + V + S Q
Sbjct: 406 VMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRQDREAELRSKASE 465
Query: 180 GANIFI----GNLDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I G++D E ++D +G SKGF F+++ S EA+ +++
Sbjct: 466 FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 525
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ + + I V+ A KK
Sbjct: 526 EMNGRDINGQLIFVARAQKK 545
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 65/221 (29%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + ++F + G ++V + D ++ +G+GF+ F E A A++ M
Sbjct: 469 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKS-KGFGFVSFDSHEAAKKAVEEM 527
Query: 97 NMIKLYGKPIRVNKASSHQKNLDVGA--------------------NIFIGNLDPEVDEK 136
N + G+ I V +A QK ++ A +++ NLD +D++
Sbjct: 528 NGRDINGQLIFVARA---QKKVERQAELKQMFEQLKNERIRGCQVVKLYVKNLDDTIDDE 584
Query: 137 LLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196
L FS+FG I + K+M
Sbjct: 585 KLRKEFSSFGSISRV-KVMQ---------------------------------------- 603
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
+ G SKGF I ++S E + ++ M+G+ L ++P+S++ A
Sbjct: 604 EEGQSKGFGLICFSSPEDALKAMTEMNGRILGSKPLSIALA 644
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 128/279 (45%), Gaps = 56/279 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 54 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 113
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 114 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 173
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 174 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 233
Query: 182 --NIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
N++I NLD EI D G S+GF F+N+++ E++ A+++
Sbjct: 234 FTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVE 293
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
M+ + + ++ + V A KK + + R A RL A
Sbjct: 294 EMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKA 332
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 107/242 (44%), Gaps = 37/242 (15%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ LD ++ + ++F + G + + + +D+ ++ +G+GF+ F E A A++ M
Sbjct: 237 VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKS-RGFGFVNFSTHESAQAAVEEM 295
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N ++ + + V +A H++ ++ G N+++ NL ++D++ L
Sbjct: 296 NDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLR 355
Query: 140 DTFSAFGVILQTPKIM--NMIKLYGKPIRVNKASSHQKNLDVGAN--------------I 183
+ F +G I + K+M ++ P K K D A
Sbjct: 356 ELFGPYGTIT-SAKVMRDTNVERDQSPDSAGKEKEADKENDKEATPEAEKAEKAEEKPSE 414
Query: 184 FIGNLDPEIMRDPDT--GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
D E + G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD
Sbjct: 415 SSEEKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKD 474
Query: 242 SK 243
+
Sbjct: 475 VR 476
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 122/263 (46%), Gaps = 54/263 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 45 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 104
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 105 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNILSCKV 164
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 165 AQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 224
Query: 182 --NIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
NI+I N+D EI D G S+GF F+NYA+ E+++A++
Sbjct: 225 FTNIYIKNIDLEITDDEFRTMFEAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVA 284
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
M+ + + ++ + V A KK +
Sbjct: 285 EMNEKEVKSQKLYVGRAQKKHER 307
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/247 (17%), Positives = 104/247 (42%), Gaps = 46/247 (18%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IY+ +D ++++ +F G + + + D+ ++ +G+GF+ + E A+ A+ M
Sbjct: 228 IYIKNIDLEITDDEFRTMFEAFGEITSATLSHDQDGKS-RGFGFVNYANHESAEAAVAEM 286
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N ++ + + V +A H++ ++ G N+++ NL ++D++ L
Sbjct: 287 NEKEVKSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEKLR 346
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVN-----------------------KASSHQKN 176
D F+ +G I + + + P K + +K
Sbjct: 347 DLFTPYGTITSAKVMRDAAERSPTPEAEEKEAAKETKDSEEKEVKTEETAEVKTEAAEKK 406
Query: 177 LDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSY 236
+ G + + G SKGF F+ ++S + + ++ M+ + + +P+ V+
Sbjct: 407 TEEGEATEEKKTEKKAF-----GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVAL 461
Query: 237 AFKKDSK 243
A +KD +
Sbjct: 462 AQRKDVR 468
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 54/262 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG L+ V+++ +++LF Q GPVV+V + +D T+ GYG++ + +DA A+
Sbjct: 32 TSLYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAARALD 91
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQ--- 150
++N L GKPIR+ + G ANIFI NLD +D K LYDTFS FG IL
Sbjct: 92 MLNFTPLNGKPIRIMYSFRDPSIRRSGTANIFIKNLDKAIDNKALYDTFSTFGAILSCKI 151
Query: 151 -------------------------TPKIMNMI----KLYGKPIRVNKASSHQKNLDVGA 181
T K+ M+ ++Y P + N
Sbjct: 152 ATDASGQSKGYGFVQFDNEESAKNATDKLNGMLLNDKQVYVGPFVRKQERESATNKTKFN 211
Query: 182 NIFIGNL--------------------DPEIMRDPDTGNSKGFAFINYASFEASDASIDA 221
N+++ NL +M+D D G SK F F+N+ + + + S++A
Sbjct: 212 NVYVKNLLESTTDEDLKNIFGEYGPITSAVVMQDGD-GKSKCFGFVNFENADDAARSVEA 270
Query: 222 MHGQYLCNRPISVSYAFKKDSK 243
++G+ ++ V A KK +
Sbjct: 271 LNGKKFDDKEWYVGKAQKKTER 292
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 133/332 (40%), Gaps = 82/332 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + +++ F G +++ + D Q+ +GYGF++F EE A A
Sbjct: 118 GTANIFIKNLDKAIDNKALYDTFSTFGAILSCKIATDASGQS-KGYGFVQFDNEESAKNA 176
Query: 93 IKIMNMIKLYGKPIRVNKASSHQK-----NLDVGANIFIGNLDPEVDEKLLYDTFSAFG- 146
+N + L K + V Q+ N N+++ NL ++ L + F +G
Sbjct: 177 TDKLNGMLLNDKQVYVGPFVRKQERESATNKTKFNNVYVKNLLESTTDEDLKNIFGEYGP 236
Query: 147 ----VILQ----------------------TPKIMNMIKLYGKPIRVNKASSH-QKNLDV 179
V++Q + + +N K K V KA ++ +++
Sbjct: 237 ITSAVVMQDGDGKSKCFGFVNFENADDAARSVEALNGKKFDDKEWYVGKAQKKTEREVEL 296
Query: 180 ----------------GANIFIGNLDPEI--------------------MRDPDTGNSKG 203
G N+++ NLD I MRDP+ G S+G
Sbjct: 297 KGRFEQSLKEAVDKFQGLNLYVKNLDDSIADDKLRELFSEFGTITSCKVMRDPN-GISRG 355
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F+ +++ E + ++ M+G+ + ++P+ V+ A +K+ + R + ++ A S
Sbjct: 356 SGFVAFSTAEEASRALADMNGKMVASKPLYVALAQRKEDRRARLQAQFSQMRPAAMAPSV 415
Query: 264 ADR-----------PHQLFADAPPPAPLPPPP 284
R QLF PPA +PP P
Sbjct: 416 GPRMSMYPPGAPGLGQQLFYGQGPPALIPPQP 447
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 41/210 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ D + A++
Sbjct: 46 ASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 105
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + G+ R+ + G NIFI NLD +D K L+DTF+AFG IL
Sbjct: 106 HLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDIL---- 161
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+ VG + + G S+GFAF++Y++ E
Sbjct: 162 ----------------------SCKVGTD--------------ENGKSRGFAFVHYSTGE 185
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
A+DA+I A++G L ++ + V + K +
Sbjct: 186 AADAAIKAVNGMLLNDKKVYVGHHVGKKER 215
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 58/224 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ +D +V++ +L GP ++V + +D +G+GF+ + E A A+ +
Sbjct: 229 VYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDE-KGVSKGFGFVNYENHESARKAVDEL 287
Query: 97 NMIKLYGKPIRVNKA------------SSHQKNLD-----VGANIFIGNLDPEVDEKLLY 139
N ++ GK + +A S +K L+ G N+++ NLD E D+ L
Sbjct: 288 NEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLR 347
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
F AFG I + ++MRD D+G
Sbjct: 348 AEFEAFGTITSS---------------------------------------KVMRD-DSG 367
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
S+GF F+ Y+S + + ++ M+G+ + +P+ V+ A +KD +
Sbjct: 368 VSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVR 411
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 124/284 (43%), Gaps = 64/284 (22%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG L V+E L++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 12 SLYVGDLHADVTEALLFEKFSTAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 96 MNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
MN L G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 72 MNFDTLKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTFSAFGHILSCKV 130
Query: 154 I---------------------------MNMIKLYGKPI----------RVNKASSHQKN 176
+ +N + L GK + R+ + HQK
Sbjct: 131 VTDENGVNKGYGFVHFETQEAANKAIEKVNGMLLNGKKVYVGYFIPRKERLMQMGDHQKQ 190
Query: 177 LDVGANIFIGNLDPEIMRDP------------------DTGNSKGFAFINYASFEASDAS 218
N+FI NL ++ D SKGF FI++ EA++
Sbjct: 191 F---TNVFIKNLAEDVDDGKLAEFGGQYGSILSAKIMFDDSKSKGFGFISFEDHEAANDF 247
Query: 219 IDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLS 262
+ ++G + R + YA + K +R R A + S
Sbjct: 248 VKTINGSEVNGRTL---YAGRAQKKAERAAELKARFEALKQERS 288
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 111/277 (40%), Gaps = 64/277 (23%)
Query: 4 GREIQAGISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVN 63
G+++ G P + L Q G+ +++ L + V + + E Q G +++
Sbjct: 166 GKKVYVGYFIPRKERLMQM-----GDHQKQFTNVFIKNLAEDVDDGKLAEFGGQYGSILS 220
Query: 64 VHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPI---RVNKASSHQKNLDV 120
+ D +G+GFI F E A+ +K +N ++ G+ + R K + L
Sbjct: 221 AKIMFD--DSKSKGFGFISFEDHEAANDFVKTINGSEVNGRTLYAGRAQKKAERAAELKA 278
Query: 121 --------------GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIR 166
G N++I NLD E+D++ L FS +G I
Sbjct: 279 RFEALKQERSTRYQGVNLYIKNLDDEIDDERLRKEFSRYGTI------------------ 320
Query: 167 VNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQY 226
++M D D NSKGF F+ ++S E + ++ M+G+
Sbjct: 321 ---------------------TSAKVMSD-DKANSKGFGFVCFSSPEEATKAVTEMNGRI 358
Query: 227 LCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
L +P+ V+ A +KD + + S + +A Q + Q
Sbjct: 359 LVAKPLYVALAQRKDERRAQLASQYMQRVAPQVRVGQ 395
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 128/279 (45%), Gaps = 56/279 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 52 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 111
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 112 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 171
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 172 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 231
Query: 182 --NIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
N++I NLD EI D G S+GF F+N+++ E++ A+++
Sbjct: 232 FTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVE 291
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
M+ + + ++ + V A KK + + R A RL A
Sbjct: 292 EMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKA 330
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 107/243 (44%), Gaps = 38/243 (15%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ LD ++ + ++F + G + + + +D+ ++ +G+GF+ F E A A++ M
Sbjct: 235 VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKS-RGFGFVNFSTHESAQAAVEEM 293
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N ++ + + V +A H++ ++ G N+++ NL ++D++ L
Sbjct: 294 NDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLR 353
Query: 140 DTFSAFGVILQTPKIM--NMIKLYGKPIRVNKASSHQKNLDVGANIFIG----------- 186
+ F +G I + K+M ++ P K K D A
Sbjct: 354 ELFGPYGTIT-SAKVMRDTNVERESSPESAGKEKEANKENDKEATPEAEKAEEKAEEKPA 412
Query: 187 ----NLDPEIMRDPDT--GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D E + G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +K
Sbjct: 413 ESSEEKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 472
Query: 241 DSK 243
D +
Sbjct: 473 DVR 475
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 120/264 (45%), Gaps = 55/264 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 55 ASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 114
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 115 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 174
Query: 154 IMNMI---KLYG-----------KPIR-VNKASSHQKNLDVG------------------ 180
+ K YG I+ VN ++K + VG
Sbjct: 175 AQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKAN 234
Query: 181 -ANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N+++ NLD E I D +TG S+GF F+N+ E++ A++
Sbjct: 235 FTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAV 294
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ ++ + + + V A KK +
Sbjct: 295 EELNDKEFKGQKLYVGRAQKKHER 318
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 114/256 (44%), Gaps = 33/256 (12%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV LD +V+ ELF + G + + + D T +G+GF+ F+ E A A++ +
Sbjct: 238 VYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEEL 297
Query: 97 NMIKLYGKPIRVNKAS-SHQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N + G+ + V +A H++ ++ G N+++ NL ++D++ L
Sbjct: 298 NDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLR 357
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNL----------- 188
D F FG I + + I G K S+++N+ A
Sbjct: 358 DLFIGFGNITSARVMRDTIADAGSESEKEKEISNKENVKEEAKKESAEEESSDKSDKAEK 417
Query: 189 -DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRH 247
D + + G SKGF F+ +++ + + ++ M+ + + +P+ V+ A +KD +
Sbjct: 418 SDSKKTLEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR---- 473
Query: 248 GSAAERLLAAQNPLSQ 263
S E + A+N + Q
Sbjct: 474 KSQLEASIQARNTIRQ 489
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 123/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN + G+P+R+ ++ + VG NIFI NL+ +D K LYDTFS FG IL
Sbjct: 71 TMNFEVIKGQPVRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
Q MN + L + + V S ++ ++GA
Sbjct: 130 VVCDDHGSRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRREREAELGARAME 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N L ++MRD D G+S+GF F+N+ E + ++
Sbjct: 190 FTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRD-DIGHSRGFGFVNFEKHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
M+G+ + R + V A K+
Sbjct: 249 MDMNGKEVSGRLLYVGRAQKR 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 118/286 (41%), Gaps = 73/286 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G I++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI MN + L + + V S ++ ++GA NI++ NL +VDE+ L D
Sbjct: 150 AAHQAIATMNGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVDEQGLQD 209
Query: 141 TFSAFGVILQTPKIMN-----------------------MIKLYGKPI--------RVNK 169
FS FG +L K+M ++ + GK + R K
Sbjct: 210 LFSQFGKMLSV-KVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQK 268
Query: 170 ASSHQKNLDV--------------GANIFIGNLDPEI----MRD--------------PD 197
Q L G N+++ NLD I +R +
Sbjct: 269 RVERQNELKRRFEQMKQDRATRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE 328
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 123/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN + G+P+R+ ++ + VG NIFI NL+ +D K LYDTFS FG IL
Sbjct: 71 TMNFEVIKGQPVRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
Q MN + L + + V S ++ ++GA
Sbjct: 130 VVCDDHGSRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRREREAELGARAME 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N L ++MRD D G+S+GF F+N+ E + ++
Sbjct: 190 FTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRD-DIGHSRGFGFVNFEKHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
M+G+ + R + V A K+
Sbjct: 249 MDMNGKEVSGRLLYVGRAQKR 269
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 118/286 (41%), Gaps = 73/286 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G I++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI MN + L + + V S ++ ++GA NI++ NL +VDE+ L D
Sbjct: 150 AAHQAIATMNGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVDEQGLQD 209
Query: 141 TFSAFGVILQTPKIMN-----------------------MIKLYGKPI--------RVNK 169
FS FG +L K+M ++ + GK + R K
Sbjct: 210 LFSQFGKMLSV-KVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQK 268
Query: 170 ASSHQKNLDV--------------GANIFIGNLDPEI----MRD--------------PD 197
Q L G N+++ NLD I +R +
Sbjct: 269 RVERQNELKRRFEQMKQDRATRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE 328
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 125/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +G ++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+P+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGQPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E +R+ + G S+GF F+++ E + ++D
Sbjct: 190 FTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ + + + V A KK
Sbjct: 250 EMNGKEMNGKLMYVGRAQKK 269
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D++ + + ELF + G +++ + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKS-RGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N ++ GK + R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KEFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 121/264 (45%), Gaps = 55/264 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 55 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 114
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 115 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 174
Query: 154 IMNMI---KLYG-----------KPIR-VNKASSHQKNLDVG------------------ 180
+ K YG I+ VN ++K + VG
Sbjct: 175 AQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKAN 234
Query: 181 -ANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N+++ NLD E I RD +TG S+GF F+N+ E++ A++
Sbjct: 235 FTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFVNFVKHESAAAAV 294
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ ++ + + + V A KK +
Sbjct: 295 EELNDKEYKGQKLYVGRAQKKHER 318
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 122/276 (44%), Gaps = 37/276 (13%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV LD +VS ELF + G + + + +D T +G+GF+ F+ E A A++ +
Sbjct: 238 VYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFVNFVKHESAAAAVEEL 297
Query: 97 NMIKLYGKPIRVNKAS-SHQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N + G+ + V +A H++ ++ G N+++ NL ++D++ L
Sbjct: 298 NDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLR 357
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRD---- 195
D F +FG I + + G K S++++N+ A G D D
Sbjct: 358 DLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKESGEEDSADKSDKVEK 417
Query: 196 --------PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRH 247
G SKGF F+ +++ + + ++ M+ + + +P+ V+ A +KD +
Sbjct: 418 SDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR---- 473
Query: 248 GSAAERLLAAQNPLSQADRPHQLFADAPPPAPLPPP 283
S E + A+N + R Q+ A A P P
Sbjct: 474 KSQLEASIQARNTI----RQQQVAAAAGMSQPFMQP 505
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 122/261 (46%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG-NVFIKNLDDSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V S ++ +VGA
Sbjct: 130 VVCDENGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEVGARAIE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D + G SKGF F+N+ E + ++
Sbjct: 190 FTNVYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMD-NNGRSKGFGFVNFEKHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
M+G+ + R + V A K+
Sbjct: 249 ADMNGKEINGRLLYVGRAQKR 269
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 117/285 (41%), Gaps = 71/285 (24%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G +++ LDD + +++ F G +++ + D +GYGF+ F E
Sbjct: 92 GLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGYGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI+ MN + L + + V S ++ +VGA N++I N ++D+ L +
Sbjct: 150 AATRAIETMNGMLLNDRKVFVGHFKSRKEREAEVGARAIEFTNVYIKNFGDDMDDDRLRE 209
Query: 141 TFSAFGVILQTPKIMN----------------------MIKLYGKPI------------R 166
FS FG L +M+ + + GK I R
Sbjct: 210 IFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYVGRAQKR 269
Query: 167 VNKASSHQKNLDV----------GANIFIGNLDP----EIMRD--------------PDT 198
+ + S ++ + G N+++ NLD E +R +
Sbjct: 270 LERQSELKRKFEQMKQERVNRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEG 329
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 52/186 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G I+ Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + G+PIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG-NVFIKNLDDSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
D S+G+ F+++ + EA+ +I+ M+G L +R + V + FK S+ +R R
Sbjct: 130 VVCDENGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGH-FK--SRKEREAEVGAR 186
Query: 254 LLAAQN 259
+ N
Sbjct: 187 AIEFTN 192
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 125/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +G ++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+P+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D + ++D + G S+GF F+++ E + ++D
Sbjct: 190 FTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ + + I V A KK
Sbjct: 250 EMNGKEMNGKLIYVGRAQKK 269
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ++F + G +++ + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKS-RGFGFVSFERHEDAQRAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N ++ GK I R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M D G
Sbjct: 312 KEFSPFGTITSAKVMM-----------------------------------------DGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + G+P+R+ ++ + VG NIFI NLD I + D
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 124/277 (44%), Gaps = 58/277 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + ED + A++
Sbjct: 48 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALE 107
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 108 ELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKV 167
Query: 154 IMNMI---KLYG-----KPIRVNKASSH-------QKNLDVG------------------ 180
+ + K YG N A H +K + VG
Sbjct: 168 AQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKAN 227
Query: 181 -ANIFIGNLD--------------------PEIMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N+D I RD + G S+GF F+NY EA+ A++
Sbjct: 228 FTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARD-EQGKSRGFGFVNYIKHEAASAAV 286
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERL 254
DA++ + + V A KK + + R A RL
Sbjct: 287 DALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARL 323
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 119/270 (44%), Gaps = 36/270 (13%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
IYV +D VS+ ELF + G + + + +D ++ +G+GF+ ++ E A A+
Sbjct: 230 NIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKS-RGFGFVNYIKHEAASAAVDA 288
Query: 96 MNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N G+ + V +A H++ ++ G N++I NL+ +VD++ L
Sbjct: 289 LNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKL 348
Query: 139 YDTFSAFGVILQTPKIMN--MIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196
D F+ FG I + K+M M + K ++ + G D + P
Sbjct: 349 RDMFTPFGTIT-SAKVMRDAMPAERSETPGDEKKEESKEEAEKTEESKEGADDKKDENKP 407
Query: 197 DT-----------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
G SKGF F+ +++ + + ++ M+ + + +P+ V+ A +KD + +
Sbjct: 408 GEKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKN 467
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFADAP 275
+ E + A+N L + Q F P
Sbjct: 468 Q----LEATIQARNQLRMQQQQQQQFGGIP 493
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 121/264 (45%), Gaps = 55/264 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 62 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTTDGEKALE 121
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 122 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 181
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 182 AQDESGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKAN 241
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N+ E + RD DTG S+GF F+N+ + E + ++
Sbjct: 242 FTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHEHAATAV 301
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
D ++G+ + + V A KK +
Sbjct: 302 DELNGKDFKGQDLYVGRAQKKHER 325
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 130/292 (44%), Gaps = 29/292 (9%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
IYV + + ++ ELF + G V + + +D+ T +G+GF+ F+ E A A+
Sbjct: 244 NIYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHEHAATAVDE 303
Query: 96 MNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N G+ + V +A H++ ++ G N+++ NLD +VD++ L
Sbjct: 304 LNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVDDEKL 363
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
+ F+ FG I + K+M + +++N G D E P +
Sbjct: 364 RELFTPFGAIT-SAKVMRDSAAETAEAEKKEEEKNKENKKEGDAEEGEKADGEKKEAPKS 422
Query: 199 -----GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD-SKGDRHGS-AA 251
G SKGF F+ +++ + + +I M+ + +P+ V+ A +KD KG S A
Sbjct: 423 EKRTVGKSKGFGFVCFSNPDEATKAIADMNQNMVNGKPLYVALAQRKDVRKGQLEASIQA 482
Query: 252 ERLLAAQNPLSQADRPHQLFADAP---PPAPLPPPPPPINIMGLPPPPPSGL 300
+ Q +QA P Q + AP PP P P G+P PP +G+
Sbjct: 483 RNQIRMQQAAAQAGMPPQ-YMQAPMFYPPGQQPGFMPAAGGRGMPYPPQAGM 533
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 121/267 (45%), Gaps = 61/267 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 58 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 117
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 118 DLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 177
Query: 153 -------------------------------KIMNMIKLY-----GKPIRVNKASSHQKN 176
++N K++ K R +K + N
Sbjct: 178 AQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKAN 237
Query: 177 LDVGANIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASD 216
NI++ N++ ++ RD +TG S+GF F+N++ EA+
Sbjct: 238 F---TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAAS 294
Query: 217 ASIDAMHGQYLCNRPISVSYAFKKDSK 243
A+++A++ L + + V A KK +
Sbjct: 295 AAVEALNEYELKGQKLYVGRAQKKHER 321
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 114/265 (43%), Gaps = 43/265 (16%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV ++ V++ LF + G + + + +D T +G+GF+ F E A A++ +
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEAL 300
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N +L G+ + V +A H++ ++ G N++I NL ++D++ L
Sbjct: 301 NEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 360
Query: 140 DTFSAFGVILQTPKIMNMIKLYG---------------------KPIRVNKASSHQKNLD 178
+ FS++G I + K+M + K +A S ++
Sbjct: 361 ELFSSYGNIT-SAKVMREAIVDAPAEAEKDKEADKEKAKKEAGDKSEEKGEAKSESEDKS 419
Query: 179 VGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238
G + G SKGF F+ +++ + + ++ M+ + + +P+ V+ A
Sbjct: 420 KSEEKTEGKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQ 479
Query: 239 KKDSKGDRHGSAAERLLAAQNPLSQ 263
+KD + S E + A+N + Q
Sbjct: 480 RKDVR----KSQLEASIQARNTIRQ 500
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 125/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +G ++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+P+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGQPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E +R+ + G S+GF F+++ E + ++D
Sbjct: 190 FTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ + + + V A KK
Sbjct: 250 EMNGKEMNGKLMYVGRAQKK 269
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D++ + + ELF + G +++ + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKS-RGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N ++ GK + R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KEFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>gi|156086682|ref|XP_001610750.1| polyadenylate binding protein [Babesia bovis T2Bo]
gi|154798003|gb|EDO07182.1| polyadenylate binding protein, putative [Babesia bovis]
Length = 585
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 116/247 (46%), Gaps = 42/247 (17%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
S A++YVG L +V+E +++E+F GPV ++ + +D +T+ GY ++ + +
Sbjct: 29 ARSSFNSASLYVGNLLPEVTEAMLYEVFNGIGPVASIRVCRDSLTRKSLGYAYVNYYNFQ 88
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFG 146
DA+ A++ +N I++ G+P R+ + G NIF+ NLD +D K LYDTFS FG
Sbjct: 89 DAEAALECLNYIEIKGQPARIMWSERDPSLRKSGTGNIFVKNLDKAIDTKALYDTFSHFG 148
Query: 147 VILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAF 206
IL + I +L GNSKG+ F
Sbjct: 149 TIL------------------------------SCKVAIDSL----------GNSKGYGF 168
Query: 207 INYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQA-D 265
++Y + E++ +I+ ++G + N +SV+ +++ + G L P + D
Sbjct: 169 VHYTTEESAKEAIEKVNGMLIGNSQVSVAPFLRRNERTSTVGDVFTNLYVRNFPDTWTED 228
Query: 266 RPHQLFA 272
HQ F+
Sbjct: 229 DLHQTFS 235
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/323 (19%), Positives = 124/323 (38%), Gaps = 90/323 (27%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I+V LD + +++ F G +++ + D + + +GYGF+ + EE A A
Sbjct: 122 GTGNIFVKNLDKAIDTKALYDTFSHFGTILSCKVAIDSLGNS-KGYGFVHYTTEESAKEA 180
Query: 93 IKIMNMIKLYGKPI------RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFG 146
I+ +N + + + R N+ +S DV N+++ N E L+ TFS +G
Sbjct: 181 IEKVNGMLIGNSQVSVAPFLRRNERTSTVG--DVFTNLYVRNFPDTWTEDDLHQTFSKYG 238
Query: 147 VI-------------------------------------------LQTPKIMNMIKLYGK 163
I + + M+ + Y
Sbjct: 239 EITSLLLKSDDKGRRFAFVNFVDTNMAKAAMEGENGVKFESVEEPMMVCQHMDKARRYAM 298
Query: 164 -PIRVNKASSHQKNLDVGANIFIGN--------------------LDPEIMRDPDTGNSK 202
+ + + Q+N +G N++I N ++MRD + G S+
Sbjct: 299 LKAQYDSNAQDQRNKFMGVNLYIKNLDDDFDDDGLRDLFKQYGTVTSSKVMRDHN-GVSR 357
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLS 262
GF F+ ++ + + ++ MH + + N+P+ V A K++ + R +
Sbjct: 358 GFGFVCFSRPDEATKAVAGMHLKLVKNKPLYVGLAEKREQRASR--------------MQ 403
Query: 263 QADRPHQL--FADAPPPAPLPPP 283
Q +R + + + D P PL PP
Sbjct: 404 QRNRQNDMMQYGDRPGYVPLYPP 426
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 134/286 (46%), Gaps = 59/286 (20%)
Query: 16 LQSLSQTKLEGGGESGDGDA-----TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDR 70
+Q+ Q + G + +G A ++YVG LD V+++ ++++F Q G VV+V + +D
Sbjct: 5 VQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDL 64
Query: 71 VTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNL 129
T+ GYG++ + +DA A+ ++N L GKPIRV + GA NIFI NL
Sbjct: 65 TTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNL 124
Query: 130 DPEVDEKLLYDTFSAFGVILQTPKIMN---MIKLYG-----------KPI-RVNKASSHQ 174
D +D K L+DTFSAFG IL ++ K YG K I ++N +
Sbjct: 125 DKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLND 184
Query: 175 KNLDVG-----------------ANIFIGNLDPE--------------------IMRDPD 197
K + VG N+F+ NL +MRD D
Sbjct: 185 KQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDAD 244
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G S+ F F+N+ + + + ++D ++G+ + ++ V A KK +
Sbjct: 245 -GKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSER 289
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 129/329 (39%), Gaps = 82/329 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + + F G +++ + D Q+ +GYGF++F EE A A
Sbjct: 115 GAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQS-KGYGFVQFDNEESALKA 173
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDV-----GANIFIGNLDPEVDEKLLYDTFSAFGV 147
I+ +N + L K + V Q+ V N+F+ NL E+ L FS FG
Sbjct: 174 IEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGT 233
Query: 148 ILQTPKIMN----------------------MIKLYGKPI--------RVNKASSHQKNL 177
+ + + + L GK + + K S + L
Sbjct: 234 LTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVEL 293
Query: 178 D--------------VGANIFIGNLDPEI--------------------MRDPDTGNSKG 203
GAN++I NLD I MRDP+ G S+G
Sbjct: 294 KHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPN-GISRG 352
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F+ +++ + + ++ M+G+ + ++P+ V+ A +K+ + R + ++ + P S
Sbjct: 353 SGFVAFSTPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRSVPMPASV 412
Query: 264 ADR-----------PHQLFADAPPPAPLP 281
A R QLF PPA +P
Sbjct: 413 APRMPIYPPGGPGIGQQLFYGQAPPAMIP 441
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 128/279 (45%), Gaps = 56/279 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 54 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 113
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 114 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 173
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 174 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 233
Query: 182 --NIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
N++I NLD EI D G S+GF F+N+++ E++ A+++
Sbjct: 234 FTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVE 293
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
M+ + + ++ + V A KK + + R A RL A
Sbjct: 294 EMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKA 332
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 107/243 (44%), Gaps = 37/243 (15%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+Y+ LD ++ + ++F + G + + + +D+ ++ +G+GF+ F E A A++
Sbjct: 236 NVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKS-RGFGFVNFSTHESAQAAVEE 294
Query: 96 MNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLL 138
MN ++ + + V +A H++ ++ G N+++ NL ++D++ L
Sbjct: 295 MNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKL 354
Query: 139 YDTFSAFGVILQTPKIM--NMIKLYGKPIRVNKASSHQKNLDVGAN-------------- 182
+ F +G I + K+M ++ P K K D A
Sbjct: 355 RELFGPYGTIT-SAKVMRDTNVERDQSPDSAGKEKEADKENDKEATPEAEKAEKAEEKPS 413
Query: 183 IFIGNLDPEIMRDPDT--GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D E + G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +K
Sbjct: 414 ESSEEKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 473
Query: 241 DSK 243
D +
Sbjct: 474 DVR 476
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 129/280 (46%), Gaps = 58/280 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 60 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 119
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + GA NIFI NLD +D K L+DTF+AFG IL
Sbjct: 120 ELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKV 179
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 180 AQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 239
Query: 182 --NIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASDASI 219
N+++ N++ E+ RD + G S+GF F+N+ + EA+ ++
Sbjct: 240 FTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAV 298
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
D ++G+ + + V A KK + + R A RL A
Sbjct: 299 DELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKA 338
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 121/261 (46%), Gaps = 24/261 (9%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+YV ++++V++ ELF + G V + + +D+ ++ +G+GF+ F E A A+
Sbjct: 242 NVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKS-RGFGFVNFTTHEAAAQAVDE 300
Query: 96 MNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N G+ + V +A H++ ++ G N++I NL +VD+ L
Sbjct: 301 LNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKL 360
Query: 139 YDTFSAFGVILQTPKIM--NMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196
FS +G I + K+M ++I+ + +K + + E D
Sbjct: 361 RAMFSEYGPIT-SAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDR 419
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA--AERL 254
G SKGF F+ +++ + + ++ M+ + + +P+ V+ A +KD + + ++ A
Sbjct: 420 KLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQARNQ 479
Query: 255 LAAQNPLSQADRPHQLFADAP 275
L Q +QA P Q + AP
Sbjct: 480 LRMQQAAAQAGMPQQ-YMQAP 499
>gi|440913528|gb|ELR62976.1| Polyadenylate-binding protein 4, partial [Bos grunniens mutus]
Length = 196
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 109/221 (49%), Gaps = 45/221 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D+K LYDTFSAFG IL
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDNSIDDKALYDTFSAFGNILSCK 120
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
+ D SKG+AF+++ +
Sbjct: 121 VVC-----------------------------------------DENGSKGYAFVHFETQ 139
Query: 213 EASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 140 EAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 180
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 121/267 (45%), Gaps = 61/267 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 74 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 133
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 134 DLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 193
Query: 153 -------------------------------KIMNMIKLY-----GKPIRVNKASSHQKN 176
++N K++ K R +K + N
Sbjct: 194 AQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKAN 253
Query: 177 LDVGANIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASD 216
NI++ N++ ++ RD +TG S+GF F+N++ EA+
Sbjct: 254 F---TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAAS 310
Query: 217 ASIDAMHGQYLCNRPISVSYAFKKDSK 243
A+++A++ L + + V A KK +
Sbjct: 311 AAVEALNEYELKGQKLYVGRAQKKHER 337
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/259 (19%), Positives = 109/259 (42%), Gaps = 37/259 (14%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV ++ V++ LF + G + + + +D T +G+GF+ F E A A++ +
Sbjct: 257 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEAL 316
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N +L G+ + V +A H++ ++ G N++I NL ++D++ L
Sbjct: 317 NEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 376
Query: 140 DTFSAFGVILQTPKIMNMI--------------------KLYGKPIRVNKASSHQKNLDV 179
+ FS++G I + I + K ++ S ++
Sbjct: 377 ELFSSYGNITSAKVMREAIVDVPAETEKDKEADKEKAKKETGDKSEEKGESKSESEDKSK 436
Query: 180 GANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239
G + G SKGF F+ +++ + + ++ M+ + + +P+ V+ A +
Sbjct: 437 SEEKTEGKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQR 496
Query: 240 KDSKGDRHGSAAERLLAAQ 258
KD + + + L +Q
Sbjct: 497 KDVRKSQVSTKVIHFLRSQ 515
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 121/267 (45%), Gaps = 61/267 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 58 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 117
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 118 DLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 177
Query: 153 -------------------------------KIMNMIKLY-----GKPIRVNKASSHQKN 176
++N K++ K R +K + N
Sbjct: 178 AQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKAN 237
Query: 177 LDVGANIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASD 216
NI++ N++ ++ RD +TG S+GF F+N++ EA+
Sbjct: 238 F---TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAAS 294
Query: 217 ASIDAMHGQYLCNRPISVSYAFKKDSK 243
A+++A++ L + + V A KK +
Sbjct: 295 AAVEALNEYELKGQKLYVGRAQKKHER 321
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 111/259 (42%), Gaps = 37/259 (14%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV ++ V++ LF + G + + + +D T +G+GF+ F E A A++ +
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEAL 300
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N +L G+ + V +A H++ ++ G N++I NL ++D++ L
Sbjct: 301 NEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 360
Query: 140 DTFSAFGVILQTPKIMNMI------------------KLYGKPIRVNKASSHQKNLDVGA 181
+ FS++G I + I K G K S ++ D
Sbjct: 361 ELFSSYGNITSAKVMREAIVDVPAETEKDKEADKEKAKKEGGDKSEEKGESKSESEDKSK 420
Query: 182 N--IFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239
+ G + G SKGF F+ +++ + + ++ M+ + + +P+ V+ A +
Sbjct: 421 SEEKTEGKTESTKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQR 480
Query: 240 KDSKGDRHGSAAERLLAAQ 258
KD + + + L+ +Q
Sbjct: 481 KDVRKSQVSTKVIHLIRSQ 499
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 124/277 (44%), Gaps = 58/277 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + ED + A++
Sbjct: 48 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALE 107
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 108 ELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKV 167
Query: 154 IMNMI---KLYG-----KPIRVNKASSH-------QKNLDVG------------------ 180
+ + K YG N A H +K + VG
Sbjct: 168 AQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKAN 227
Query: 181 -ANIFIGNLD--------------------PEIMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N+D I RD + G S+GF F+NY EA+ A++
Sbjct: 228 FTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARD-EQGKSRGFGFVNYIKHEAASAAV 286
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERL 254
DA++ + + V A KK + + R A RL
Sbjct: 287 DALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARL 323
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 119/276 (43%), Gaps = 48/276 (17%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
IYV +D VS+ ELF + G + + + +D ++ +G+GF+ ++ E A A+
Sbjct: 230 NIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKS-RGFGFVNYIKHEAASAAVDA 288
Query: 96 MNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N G+ + V +A H++ ++ G N++I NL+ +VD++ L
Sbjct: 289 LNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKL 348
Query: 139 YDTFSAFGVILQTPKIMN-------------------MIKLYGKPIRVNKASSHQKNLDV 179
D F+ FG I + K+M + A +
Sbjct: 349 RDMFTPFGTIT-SAKVMRDAMPAERSETPGDEKKEEAKEESEKTEESNEGADDKKDENKP 407
Query: 180 GANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239
G + I + +I+ G SKGF F+ +++ + + ++ M+ + + +P+ V+ A +
Sbjct: 408 GEKVTIKG-EKKIL-----GKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQR 461
Query: 240 KDSKGDRHGSAAERLLAAQNPLSQADRPHQLFADAP 275
KD + ++ E + A+N L + Q F P
Sbjct: 462 KDVRKNQ----LEATIQARNQLRMQQQQQQQFGGIP 493
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 121/267 (45%), Gaps = 61/267 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 58 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 117
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 118 DLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 177
Query: 153 -------------------------------KIMNMIKLY-----GKPIRVNKASSHQKN 176
++N K++ K R +K + N
Sbjct: 178 AQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKAN 237
Query: 177 LDVGANIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASD 216
NI++ N++ ++ RD +TG S+GF F+N++ EA+
Sbjct: 238 F---TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAAS 294
Query: 217 ASIDAMHGQYLCNRPISVSYAFKKDSK 243
A+++A++ L + + V A KK +
Sbjct: 295 AAVEALNEYELKGQKLYVGRAQKKHER 321
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/245 (20%), Positives = 106/245 (43%), Gaps = 39/245 (15%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV ++ V++ LF + G + + + +D T +G+GF+ F E A A++ +
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEAL 300
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N +L G+ + V +A H++ ++ G N++I NL ++D++ L
Sbjct: 301 NEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 360
Query: 140 DTFSAFGVILQTPKIMNMIKLYG---------------------KPIRVNKASSHQKNLD 178
+ FS++G I + K+M + K +A S ++
Sbjct: 361 ELFSSYGNIT-SAKVMREAIVDAPAEAEKDKEADKEKAKKEAGDKSEEKGEAKSESEDKS 419
Query: 179 VGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238
G + G SKGF F+ +++ + + ++ M+ + + +P+ V+ A
Sbjct: 420 KSEEKTEGKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQ 479
Query: 239 KKDSK 243
+KD +
Sbjct: 480 RKDVR 484
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 41/210 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ D + A++
Sbjct: 48 ASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 107
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + G+ R+ + G NIFI NLD +D K L+DTF+AFG IL
Sbjct: 108 HLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDIL---- 163
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+ VG + + G S+GFAF++Y++ E
Sbjct: 164 ----------------------SCKVGTD--------------ENGKSRGFAFVHYSTGE 187
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
A+DA+I A++G L ++ + V + K +
Sbjct: 188 AADAAIKAVNGMLLNDKKVYVGHHVGKKER 217
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 58/225 (25%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+Y+ +D +V++ +L GP ++V + +D +G+GF+ + E A A+
Sbjct: 230 NVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDE-QGVSKGFGFVNYENHESAKQAVDE 288
Query: 96 MNMIKLYGKPIRVNKA------------SSHQKNLD-----VGANIFIGNLDPEVDEKLL 138
+N ++ GK + +A S +K ++ G N++I NLD E D+ L
Sbjct: 289 LNEKEINGKKLYAGRAQTKSEREAELKKSHEEKRIENEAKSAGVNLYIKNLDDEWDDDRL 348
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
F AFG I + ++MRD D+
Sbjct: 349 RAEFEAFGTITSS---------------------------------------KVMRD-DS 368
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G S+GF F+ Y+S + + ++ M+G+ + +P+ V+ A +KD +
Sbjct: 369 GVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVR 413
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 121/263 (46%), Gaps = 54/263 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 45 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 104
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 105 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNILSCKV 164
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 165 AQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 224
Query: 182 --NIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
NI+I N+D EI D G S+GF F+NYA+ E+++A++
Sbjct: 225 FTNIYIKNIDLEITDDEFRVMFEAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVA 284
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
M+ + + + + V A KK +
Sbjct: 285 EMNEKEVKTQKLYVGRAQKKHER 307
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/241 (18%), Positives = 105/241 (43%), Gaps = 35/241 (14%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IY+ +D ++++ +F G + + + D+ ++ +G+GF+ + E A+ A+ M
Sbjct: 228 IYIKNIDLEITDDEFRVMFEAFGEITSATLSHDQDGKS-RGFGFVNYANHESAEAAVAEM 286
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N ++ + + V +A H++ ++ G N+++ NL ++D++ L
Sbjct: 287 NEKEVKTQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEKLR 346
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFI-------------- 185
D F+ +G I + + + P +K + + +V
Sbjct: 347 DLFTPYGTITSAKVMRDAAERSPTPEAEDKETKGSEEKEVKTEETAEVKTEETTEEKKTE 406
Query: 186 --GNLDPEIMRDPDT-GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242
G E + G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD
Sbjct: 407 EQGEASEEKKAEKKAFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNAKPLYVALAQRKDV 466
Query: 243 K 243
+
Sbjct: 467 R 467
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 41/210 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ D + A++
Sbjct: 48 ASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 107
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + G+ R+ + G NIFI NLD +D K L+DTF+AFG IL
Sbjct: 108 HLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDIL---- 163
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+ VG + + G S+GFAF++Y++ E
Sbjct: 164 ----------------------SCKVGTD--------------ENGKSRGFAFVHYSTGE 187
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
A+DA+I A++G L ++ + V + K +
Sbjct: 188 AADAAIKAVNGMLLNDKKVYVGHHVGKKER 217
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 98/225 (43%), Gaps = 58/225 (25%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+Y+ +D +V++ +L GP ++V + +D +G+GF+ + E A A+
Sbjct: 230 NVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDE-KGVSKGFGFVNYEHHESARKAVDE 288
Query: 96 MNMIKLYGKPIRVNKA------------SSHQKNLD-----VGANIFIGNLDPEVDEKLL 138
+N ++ GK + +A S +K L+ G N++I NLD E D+ L
Sbjct: 289 LNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYIKNLDDEWDDDRL 348
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
F AFG I + ++MRD D+
Sbjct: 349 RAEFEAFGTITSS---------------------------------------KVMRD-DS 368
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G S+GF F+ Y+S + + ++ M+G+ + +P+ V+ A +KD +
Sbjct: 369 GVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVR 413
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 122/261 (46%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG-NIFIKNLDDSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRV-NKASSHQKNLDVGA---- 181
+ MN + L + + V N S ++ + GA
Sbjct: 130 VVCDENGSRGYGFVHFETHEAANRAIATMNGMLLNDRKVFVGNFKSRREREAEYGAKAME 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +M D + G SKGF F+N+ + + ++
Sbjct: 190 FTNVYIKNFGEEMSNERLQETFSIFGKTLSVKVMTD-NIGRSKGFGFVNFEKHQDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + R + V A K+
Sbjct: 249 EDMNGKEINGRMLYVGRAQKR 269
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 128/332 (38%), Gaps = 80/332 (24%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G I++ LDD + +++ F G +++ + D +GYGF+ F E
Sbjct: 92 GLRKSGVGNIFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGYGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRV-NKASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A+ AI MN + L + + V N S ++ + GA N++I N E+ + L +
Sbjct: 150 AANRAIATMNGMLLNDRKVFVGNFKSRREREAEYGAKAMEFTNVYIKNFGEEMSNERLQE 209
Query: 141 TFSAFGVILQTPKIMNMI----------------------KLYGKPI--------RVNKA 170
TFS FG L + + I + GK I R K
Sbjct: 210 TFSIFGKTLSVKVMTDNIGRSKGFGFVNFEKHQDAQKAVEDMNGKEINGRMLYVGRAQKR 269
Query: 171 SSHQKNLDV--------------GANIFIGNL----DPEIMRD--------------PDT 198
Q L G N+++ NL D E +R +
Sbjct: 270 MERQSELKRKFEQIKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEG 329
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + + + LA
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATL 389
Query: 259 NPLSQADRPHQLFADAPPP----APLPPPPPP 286
L P LF PP P P P P
Sbjct: 390 RTL-----PGPLFCSFQPPPGYFVPSIPQPQP 416
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 49/178 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G I+ Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + G+PIR+ ++ + VG NIFI NLD I + D
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG-NIFIKNLDDSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA 251
D S+G+ F+++ + EA++ +I M+G L +R + V + + +G+ A
Sbjct: 130 VVCDENGSRGYGFVHFETHEAANRAIATMNGMLLNDRKVFVGNFKSRREREAEYGAKA 187
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 127/279 (45%), Gaps = 56/279 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 120
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + GA NIFI NLD +D K L+DTF+AFG IL
Sbjct: 121 ELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKV 180
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 181 AQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 240
Query: 182 --NIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
N+++ N++ E+ D G ++GF F+N+ + EA+ ++D
Sbjct: 241 FTNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAKAVD 300
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
++G+ + + V A KK + + R A RL A
Sbjct: 301 DLNGKDFRGQDLYVGRAQKKHEREEELRRSYEAARLEKA 339
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 121/260 (46%), Gaps = 24/260 (9%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV ++ +V++ ELF + G V + + +D+ +T +G+GF+ F E A A+ +
Sbjct: 244 VYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKT-RGFGFVNFTTHEAAAKAVDDL 302
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N G+ + V +A H++ ++ G N++I NL +VD++ L
Sbjct: 303 NGKDFRGQDLYVGRAQKKHEREEELRRSYEAARLEKANKYQGVNLYIKNLGDDVDDEKLR 362
Query: 140 DTFSAFGVILQTPKIM--NMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
FS +G I + K+M ++I+ K + + + + E D
Sbjct: 363 AMFSEYGPIT-SAKVMRDSLIEGEEKDEKDKENKKEGETKEEEEKEGSAEKKTEKKGDRK 421
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA--AERLL 255
G SKGF F+ +++ + + ++ M+ + + +P+ V+ A +KD + + ++ A L
Sbjct: 422 LGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQARNQL 481
Query: 256 AAQNPLSQADRPHQLFADAP 275
Q +QA P Q + AP
Sbjct: 482 RMQQAAAQAGMPQQ-YMQAP 500
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 125/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D +G S+GF F+++ E ++ ++
Sbjct: 190 FTNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTD-SSGKSRGFGFVSFEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ ++G L + + V A KK
Sbjct: 249 EEINGTELNGKTVFVGRAQKK 269
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D++ + + E+F + G ++V + D ++ +G+GF+ F EDA+ A++ +
Sbjct: 193 VYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKS-RGFGFVSFEKHEDANKAVEEI 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L GK + R K Q L G N++I NLD +D++ L
Sbjct: 252 NGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I + K+M + G
Sbjct: 312 KEFSPFGSIT-SAKVM----------------------------------------LEDG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIK---------------------- 159
A++++G+L P++ E +LY+ FS G +L +MI
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 160 ------LYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
+ GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + +A+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 125/282 (44%), Gaps = 56/282 (19%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ D + A+
Sbjct: 48 SLYVGELDPSVTEAMLFEVFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALDQ 107
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP-- 152
+N + + R+ + G NIFI NLD ++D K L+DTF+AFG +L
Sbjct: 108 LNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVA 167
Query: 153 -------------------------KIMNMIKLYGKPIRVNK---ASSHQKNLD----VG 180
K +N + L K + V Q +D
Sbjct: 168 TDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVFVGHHIPRKERQSKIDEMKAQY 227
Query: 181 ANIFIGNLDPEI-------------------MRDPDTGNSKGFAFINYASFEASDASIDA 221
NI++ NLDPE+ + + G S+GF F+N+ S E + A+++
Sbjct: 228 TNIYVKNLDPELGQEGFEELFGKFGNITSAALSKDEEGKSRGFGFVNFESHEQAAAAVET 287
Query: 222 MHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
+H + R + V+ A KK + D + E A Q LS+
Sbjct: 288 LHDTEINGRKLYVARAQKKSEREDELRKSYEN--AKQEKLSK 327
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 58/224 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV LD ++ + ELF + G + + + KD ++ +G+GF+ F E A A++ +
Sbjct: 230 IYVKNLDPELGQEGFEELFGKFGNITSAALSKDEEGKS-RGFGFVNFESHEQAAAAVETL 288
Query: 97 NMIKLYGKPIRVNKASSHQKNLD-----------------VGANIFIGNLDPEVDEKLLY 139
+ ++ G+ + V +A + D G N++I NL+ ++D++ L
Sbjct: 289 HDTEINGRKLYVARAQKKSEREDELRKSYENAKQEKLSKYQGVNLYIKNLEDDIDDEKLR 348
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
F FG I ++MRD +
Sbjct: 349 AEFEPFGTITSC---------------------------------------KVMRD-EKN 368
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S + + ++ M+ + + ++P+ VS A +++ +
Sbjct: 369 TSKGFGFVCFSSPDEATKAVSEMNNKMIGSKPLYVSLAQRREVR 412
>gi|332208761|ref|XP_003253477.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 590
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 128/280 (45%), Gaps = 60/280 (21%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
SG A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 90 DYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
+ A+ MN L G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG
Sbjct: 66 ERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGN 124
Query: 148 IL--------------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVG 180
IL Q MN + L + + V S ++ ++G
Sbjct: 125 ILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELG 184
Query: 181 A------NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEA 214
A NI++ N L ++MRD ++G+S+ F F+N+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
+ ++ M+G+ + R + YA + + +R R
Sbjct: 244 AQKAVVHMNGKEVSGRLL---YAGRAQKRMERQNELKRRF 280
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 52/186 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN L G+PIR+ ++ + VG NIFI NL+ I + D
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
D S+GF F+++ + EA+ +I+ M+G L +R + V + FK S+ +R R
Sbjct: 130 VACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FK--SRREREAELGAR 186
Query: 254 LLAAQN 259
L N
Sbjct: 187 ALEFTN 192
>gi|294891158|ref|XP_002773449.1| spliceosome associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239878602|gb|EER05265.1| spliceosome associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 216
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 63/80 (78%), Gaps = 4/80 (5%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA 250
+IMR +TG SKGF F++Y FEASDA++ M+GQYLCNR ISVSY++KKDSKG+RHG+A
Sbjct: 11 KIMRS-ETGESKGFGFVSYDGFEASDAAMAGMNGQYLCNRQISVSYSYKKDSKGERHGTA 69
Query: 251 AERLLAAQNPLSQADRPHQL 270
AER++AA SQ PH +
Sbjct: 70 AERMIAANRESSQ---PHHV 86
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 106/222 (47%), Gaps = 44/222 (19%)
Query: 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDAD 90
G G +++YVG L+ V+E ++E F GPVV++ + +D +T+ GY ++ F DA
Sbjct: 33 GAGTSSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSPNDAA 92
Query: 91 YAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
+AI ++N + GKPIRV ++ + VG NIFI NLD +D K L DTF+ FG I
Sbjct: 93 HAIDVLNFQVINGKPIRVLYSQRDPAVRRSGVG-NIFIKNLDKAIDNKALLDTFAQFGTI 151
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFIN 208
M+ GNSKG+ F+
Sbjct: 152 TSAKVAMD----------------------------------------GQGNSKGYGFVQ 171
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA 250
+ + EA+ A+ID ++G L ++ + V F++ ++ G A
Sbjct: 172 FETQEAAQAAIDNVNGMELNDKQVYVG-PFQRRAERSNTGEA 212
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 70/336 (20%), Positives = 130/336 (38%), Gaps = 84/336 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + + F Q G + + + D + +GYGF++F +E A A
Sbjct: 123 GVGNIFIKNLDKAIDNKALLDTFAQFGTITSAKVAMDGQGNS-KGYGFVQFETQEAAQAA 181
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA----NIFIGNLDPEVDEKLLYDTFSAFGVI 148
I +N ++L K + V + + G N+++ NL + ++ L + F+ G +
Sbjct: 182 IDNVNGMELNDKQVYVGPFQRRAERSNTGEAKFNNVYVKNLSENLSDEKLREKFAEHGAV 241
Query: 149 LQTPKIMNM--------IKLYGKP----------------------IRVNKASSHQKNLD 178
+ + Y +P R K + + L
Sbjct: 242 TSCVIMRDEEGKSKGFGFVCYEEPEGAAAAVEKLDGYTEDEKTWVVCRAQKKAEREAELK 301
Query: 179 --------------VGANIFIGNLDP--------------------EIMRDPDTGNSKGF 204
GAN++I NL+ +MRD +G S+G
Sbjct: 302 AKFDQERRERMEKMAGANLYIKNLEDGTDDEKLRELFKEFGTITSCRVMRDA-SGVSRGS 360
Query: 205 AFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR-HGSAAERLLAAQNPLSQ 263
AF+ ++S + + ++ M+G+ + +P+ V+ A +K+ + R A+R+ A P
Sbjct: 361 AFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQRKEERRMRLQAQFAQRMPGAGMPGGM 420
Query: 264 ADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPPSG 299
A P+ +PPP P M PPP+G
Sbjct: 421 A--PY-----------MPPPGVPGAPMYYGQPPPAG 443
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 105/209 (50%), Gaps = 41/209 (19%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG L+ V+++ ++ELF Q+G V++V + +D ++ GY ++ F DA A+++
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI 154
+N L GKPIRV ++ + G ANIFI NLD +D K L+DTFSAFG IL
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSC--- 156
Query: 155 MNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEA 214
++ D + G SKGF F+ Y EA
Sbjct: 157 ------------------------------------KVATD-EMGQSKGFGFVQYDKGEA 179
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ ++I +++G + ++P+ V +K +
Sbjct: 180 AQSAIKSLNGMLINDKPVYVGPFLRKQER 208
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/324 (22%), Positives = 131/324 (40%), Gaps = 82/324 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + + + F G +++ + D + Q+ +G+GF+++ E A A
Sbjct: 125 GSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQS-KGFGFVQYDKGEAAQSA 183
Query: 93 IKIMNMIKLYGKPIRVN---KASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGV 147
IK +N + + KP+ V + + ++D N+F+ NL ++ L F A+G
Sbjct: 184 IKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGN 243
Query: 148 ILQTPKIMNM----------------------IKLYGKPI--------RVNKASSHQKNL 177
I ++ M +L GK I R K S + L
Sbjct: 244 ITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIEL 303
Query: 178 DV--------------GANIFIGNLD--------------------PEIMRDPDTGNSKG 203
G N+++ NLD +IMRD + G SKG
Sbjct: 304 KRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDAN-GVSKG 362
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F+ +++ E + ++ M+G+ + +P+ V++A +K+ +R + Q SQ
Sbjct: 363 SGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKE----------DRKVMLQAQFSQ 412
Query: 264 ADRPHQLFADAPPPAPLPPPPPPI 287
RP + P P+ PP P+
Sbjct: 413 V-RPVPMTPSMAPRLPMYPPMAPL 435
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 122/266 (45%), Gaps = 58/266 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 18 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 77
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
MN +YGKPIR+ + GA NIFI NLD +D K +YDTFS FG IL
Sbjct: 78 TMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKV 137
Query: 153 --------------------------KIMNMIKLYGKPIRVNKASSHQKNL-DVG----- 180
+ +N + L GK + V K L ++G
Sbjct: 138 ANDEELNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRMARLREMGETTRR 197
Query: 181 -ANIFIGN----LDPE----------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N LD E +M D D G SKGF F+ + + E ++ ++
Sbjct: 198 FTNVYIKNFADELDKEALEKLFFKFGKITSAAVMVDAD-GKSKGFGFVAFENPEDAEKAV 256
Query: 220 DAMHGQYL--CNRPISVSYAFKKDSK 243
MH L R + V A KK+ +
Sbjct: 257 TEMHEYELPGTERKLYVCRAQKKNER 282
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 112/273 (41%), Gaps = 65/273 (23%)
Query: 4 GREIQAGISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVN 63
G+++ G P + L + GE+ +Y+ D++ + + +LF + G + +
Sbjct: 173 GKKVYVGKFQPRMARLREM-----GETTRRFTNVYIKNFADELDKEALEKLFFKFGKITS 227
Query: 64 VHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDV--- 120
+ D ++ +G+GF+ F EDA+ A+ M+ +L G ++ + +KN
Sbjct: 228 AAVMVDADGKS-KGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAEL 286
Query: 121 ----------------GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKP 164
G N+++ NLD V++ +L F A+G I
Sbjct: 287 KRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKI---------------- 330
Query: 165 IRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHG 224
++M D D G SKGF F+ + + + ++ M+G
Sbjct: 331 -----------------------TSAKVMCD-DNGRSKGFGFVCFEKPDEATKAVTEMNG 366
Query: 225 QYLCNRPISVSYAFKKDSKGDRHGSAAERLLAA 257
+ +C +P+ V+ A +K+ + + S + LA+
Sbjct: 367 KMMCTKPLYVALAQRKEDRKAQLASQYMQRLAS 399
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 105/209 (50%), Gaps = 41/209 (19%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG L+ V+++ ++ELF Q+G V++V + +D ++ GY ++ F DA A+++
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI 154
+N L GKPIRV ++ + G ANIFI NLD +D K L+DTFSAFG IL
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSC--- 156
Query: 155 MNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEA 214
++ D + G SKGF F+ Y EA
Sbjct: 157 ------------------------------------KVATD-EMGQSKGFGFVQYDKGEA 179
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ ++I +++G + ++P+ V +K +
Sbjct: 180 AQSAIKSLNGMLINDKPVYVGPFLRKQER 208
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 135/331 (40%), Gaps = 81/331 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + + + F G +++ + D + Q+ +G+GF+++ E A A
Sbjct: 125 GSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQS-KGFGFVQYDKGEAAQSA 183
Query: 93 IKIMNMIKLYGKPIRVN---KASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGV 147
IK +N + + KP+ V + + ++D N+F+ NL ++ L F A+G
Sbjct: 184 IKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGN 243
Query: 148 ILQTPKIMNM----------------------IKLYGKPI--------RVNKASSHQKNL 177
I ++ M +L GK I R K S + L
Sbjct: 244 ITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIEL 303
Query: 178 DV--------------GANIFIGNLD--------------------PEIMRDPDTGNSKG 203
G N+++ NLD +IMRD + G SKG
Sbjct: 304 KRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDAN-GVSKG 362
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL--------L 255
F+ +++ E + ++ M+G+ + +P+ V++A +K+ + + ++ +
Sbjct: 363 SGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQVRPVPMTPSM 422
Query: 256 AAQNPLSQADRP--HQLFADAPPPAPLPPPP 284
A + P+ P QLF PPA +PP P
Sbjct: 423 APRLPMYPPMAPLGQQLFYGQAPPAIMPPQP 453
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 101/210 (48%), Gaps = 41/210 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG LD V+++ +++LF Q G VV+V + +D +Q GYG++ F DA A+
Sbjct: 24 TSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMD 83
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
++N L KPIR+ + G ANIFI NLD +D K LYDTFS FG IL
Sbjct: 84 VLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKI 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
M+ +G SKG+ F+ + + E
Sbjct: 144 AMDA----------------------------------------SGLSKGYGFVQFENEE 163
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++ ++ID ++G L ++P+ V + +K +
Sbjct: 164 SAQSAIDKLNGMLLNDKPVYVGHFQRKQDR 193
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 116/283 (40%), Gaps = 71/283 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + +++ F G +++ + D + +GYGF++F EE A A
Sbjct: 110 GAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSA 168
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGAN-----IFIGNLDPEVDEKLLYDTFSAFGV 147
I +N + L KP+ V Q + +N +++ NL V + L +TF +G
Sbjct: 169 IDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGT 228
Query: 148 ILQTPKI---------------------------MNMIKLYGKPIRVNKA-SSHQKNLDV 179
I + +N K K V KA +++ L++
Sbjct: 229 ITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERELEL 288
Query: 180 ----------------GANIFIGNLDP--------------------EIMRDPDTGNSKG 203
GAN+++ NLD +I+RDP G S+G
Sbjct: 289 KERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQ-GISRG 347
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
F+ +++ E + ++ M+G+ + +P+ V+ A KK+ + R
Sbjct: 348 SGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQKKEERKAR 390
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 124/278 (44%), Gaps = 59/278 (21%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
++++YVG LD V E + +LF Q PV V + +D +T+ GY ++ F EDA A+
Sbjct: 57 NSSLYVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRD-LTRRSLGYAYVNFANPEDASRAM 115
Query: 94 KIMNMIKLYGKPIRVNKASSH-QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+N + +PIR+ ++ L N+FI NLDP +D K LY+TFSAFG IL
Sbjct: 116 DSLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDPSIDNKALYETFSAFGTILSCK 175
Query: 153 KIMNMI---KLYGKPIRVNKASSHQKNLD-------------VG---------------- 180
M+ + K YG ++ K + Q +D VG
Sbjct: 176 VAMDAVGRSKGYGF-VQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRSRSESGAV 234
Query: 181 ---ANIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDAS 218
N+++ NL EI D +GNS+ F F+N+ S EA+ +
Sbjct: 235 PRFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFESPEAAAVA 294
Query: 219 IDAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERL 254
++ M+G L + V A KK + + R ER+
Sbjct: 295 VEKMNGISLGEDVLYVGRAQKKSEREEELRRKFEQERI 332
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/343 (22%), Positives = 138/343 (40%), Gaps = 79/343 (23%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + ++E F G +++ + D V ++ +GYGF++F EE A A
Sbjct: 143 GKGNVFIKNLDPSIDNKALYETFSAFGTILSCKVAMDAVGRS-KGYGFVQFEKEETAQAA 201
Query: 93 IKIMNMIKLYGKPI-------RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
I +N + L K + R +++ S + N+++ NL E+ + L TF +
Sbjct: 202 IDKLNGMLLNDKQVFVGHFVRRQDRSRSESGAVPRFTNVYVKNLPKEITDDELKKTFGKY 261
Query: 146 G--------------------VILQTPKI-------MNMIKLYGKPI----RVNKASSHQ 174
G V ++P+ MN I L G+ + R K S +
Sbjct: 262 GDISSAVVMKDQSGNSRSFGFVNFESPEAAAVAVEKMNGISL-GEDVLYVGRAQKKSERE 320
Query: 175 KNLDV--------------GANIFIGNLDPEIMRDP-------------------DTGNS 201
+ L G+N+++ NLD + + G S
Sbjct: 321 EELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS 380
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPL 261
+GF F+ Y+S E + ++ M+G+ + +P+ V++A +K+ + H + + +
Sbjct: 381 RGFGFVAYSSPEEASRALSEMNGKMIGRKPLYVAFAQRKEER-RAHLQTLFTHIRSPGTM 439
Query: 262 SQADRPHQLFADAPPPAPLPPPPPPI-----NIMGLPPPPPSG 299
S P F PP P+ P P N GL PP P G
Sbjct: 440 SPIPSPMPGFHHHPPGGPMSGPHHPTMYIGQNGQGLVPPQPMG 482
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 128/273 (46%), Gaps = 61/273 (22%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G +++YVG L V+E++++E+F G ++++ + +D T+ GY +I F
Sbjct: 4 GGHGCSLSSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQ----KNLDVGANIFIGNLDPEVDEKLLYDTFS 143
DA+ A+ MN + G+PIR+ SH+ + +G NIFI NL+ +D K LYDTFS
Sbjct: 64 DAERALDTMNFEVIKGQPIRI--MWSHRDPGLRKSGMG-NIFIKNLENSIDNKALYDTFS 120
Query: 144 AFGVILQTPKI--------------------------MNMIKLYGKPIRVNKASSHQKN- 176
FG IL + + MN + L + + V S QK
Sbjct: 121 TFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKRE 180
Query: 177 LDVGA------NIFIGNLDP--------------------EIMRDPDTGNSKGFAFINYA 210
++GA NI++ NL ++MRD + G S+GF F+N+
Sbjct: 181 AELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSN-GQSRGFGFVNFE 239
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
E + ++D M+G+ + + + V A K+ +
Sbjct: 240 KHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAER 272
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 59/233 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G IYV L V E + +LF Q G + +V + +D Q+ +G+GF+ F E
Sbjct: 184 GARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQS-RGFGFVNFEKHE 242
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSH-----------------QKNLDVGANIFIGNLD 130
+A A+ MN ++ G+ + V +A ++N G N+++ NLD
Sbjct: 243 EAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLD 302
Query: 131 PEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 190
++++ L + FS +GVI + K+M
Sbjct: 303 DSINDERLKEVFSTYGVIT-SAKVMT---------------------------------- 327
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++ +SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 328 ------ESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 128/273 (46%), Gaps = 61/273 (22%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G +++YVG L V+E++++E+F G ++++ + +D T+ GY +I F
Sbjct: 4 GGHGCSLSSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQ----KNLDVGANIFIGNLDPEVDEKLLYDTFS 143
DA+ A+ MN + G+PIR+ SH+ + +G NIFI NL+ +D K LYDTFS
Sbjct: 64 DAERALDTMNFEVIKGQPIRI--MWSHRDPGLRKSGMG-NIFIKNLENSIDNKALYDTFS 120
Query: 144 AFGVILQTPKI--------------------------MNMIKLYGKPIRVNKASSHQKN- 176
FG IL + + MN + L + + V S QK
Sbjct: 121 TFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKRE 180
Query: 177 LDVGA------NIFIGNLDP--------------------EIMRDPDTGNSKGFAFINYA 210
++GA NI++ NL ++MRD + G S+GF F+N+
Sbjct: 181 AELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSN-GQSRGFGFVNFE 239
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
E + ++D M+G+ + + + V A K+ +
Sbjct: 240 KHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAER 272
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 59/233 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G IYV L V E + +LF Q G + +V + +D Q+ +G+GF+ F E
Sbjct: 184 GARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQS-RGFGFVNFEKHE 242
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSH-----------------QKNLDVGANIFIGNLD 130
+A A+ MN ++ G+ + V +A ++N G N+++ NLD
Sbjct: 243 EAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLD 302
Query: 131 PEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 190
++++ L + FS +GVI + K+M
Sbjct: 303 DSINDERLKEVFSTYGVIT-SAKVMT---------------------------------- 327
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++ +SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 328 ------ESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 105/203 (51%), Gaps = 45/203 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG L+ VSE ++E+F Q+GPVV++ + +D +T+ GY ++ + +DA A++
Sbjct: 24 TSVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYHSAQDATRALE 83
Query: 95 IMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
++N + GKPIR+ ++ S +K+ ANIFI NLD +D K L+DTFSAFG IL
Sbjct: 84 LLNFTPVNGKPIRIMFSHRDPSLRKS--GAANIFIKNLDKAIDNKALHDTFSAFGGILSC 141
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
+V SS G SKG+ F+ +
Sbjct: 142 --------------KVATDSS--------------------------GQSKGYGFVQFEK 161
Query: 212 FEASDASIDAMHGQYLCNRPISV 234
E++ ++I+ ++G L ++ + V
Sbjct: 162 EESAQSAIEKVNGMLLNDKQVFV 184
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 97/231 (41%), Gaps = 58/231 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV L + ++ + ++F GP+ + + +D ++ + +GF+ F +DA A++ +
Sbjct: 205 VYVKNLGENTTDDELKKVFGAYGPISSAVVMRDNEGKS-KCFGFVNFELADDAAKAVEAL 263
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N K K R K S + L G N+++ NLD VD++ L
Sbjct: 264 NGKKQDEKEWYVGRAQKKSEREAELRAKFEQERKSRIEKYQGVNLYLKNLDDAVDDEKLR 323
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ F+ +G I ++M+DP G
Sbjct: 324 ELFAEYGTITSC---------------------------------------KVMKDPQ-G 343
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA 250
S+G F+ +++ E + ++ M+ + + ++P+ V+ A +K+ + R +A
Sbjct: 344 QSRGSGFVAFSTPEEATRAVTEMNTKMVGSKPLYVALAQRKEERRVRLQAA 394
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 108/220 (49%), Gaps = 43/220 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D VT+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 71 TMNFDIIKGRPIRIMWSQRDPSLRRSGVG-NVFIKNLDKNIDNKAMYDTFSAFGNILSC- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
+ +D ++G+SKG+ F+++ +
Sbjct: 129 --------------------------------------RVAQD-ESGSSKGYGFVHFETE 149
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
EA++ SID ++G L + + V + + G A+
Sbjct: 150 EAANKSIDRVNGMLLNGKKVYVGKFISRKEREKELGEKAK 189
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/246 (20%), Positives = 95/246 (38%), Gaps = 63/246 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GE +YV + +++ + E+F + G + + H + +G+GF+ F
Sbjct: 185 GEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITS-HKVMSKDDGKSRGFGFVAFEDPN 243
Query: 88 DADYAIKIMNMIKLYGKPI----RVNKASSHQKNLDV--------------GANIFIGNL 129
AD A+ +N ++ I R K + Q+ L G N+++ NL
Sbjct: 244 AADRAVADLNGKEIAEGKIMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNL 303
Query: 130 DPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLD 189
D +D++ L F+ FG I +M
Sbjct: 304 DDTIDDERLRKEFAPFGTITSVKVMM---------------------------------- 329
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
+ G SKGF F+ ++ E + ++ M+G+ + ++P+ V+ A +K+ DR
Sbjct: 330 -------EDGRSKGFGFVCFSLAEEATKAVTEMNGRIVGSKPLYVALAQRKE---DRKAH 379
Query: 250 AAERLL 255
A + L
Sbjct: 380 LASQYL 385
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 105/209 (50%), Gaps = 41/209 (19%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG L+ V+++ ++ELF Q+G V++V + +D ++ GY ++ F DA A+++
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI 154
+N L GKPIRV ++ + G ANIFI NLD +D K L+DTFSAFG IL
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSC--- 156
Query: 155 MNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEA 214
++ D + G SKGF F+ Y EA
Sbjct: 157 ------------------------------------KVATD-EMGQSKGFGFVQYDKGEA 179
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ ++I +++G + ++P+ V +K +
Sbjct: 180 AQSAIKSLNGMLINDKPVYVGPFLRKQER 208
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 132/331 (39%), Gaps = 83/331 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + + + F G +++ + D + Q+ +G+GF+++ E A A
Sbjct: 125 GSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQS-KGFGFVQYDKGEAAQSA 183
Query: 93 IKIMNMIKLYGKPIRVN---KASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGV 147
IK +N + + KP+ V + + ++D N+F+ NL ++ L F A+G
Sbjct: 184 IKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGN 243
Query: 148 ILQTPKIMNM----------------------IKLYGKPI--------RVNKASSHQKNL 177
I ++ M +L GK I R K S + L
Sbjct: 244 ITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIEL 303
Query: 178 DV--------------GANIFIGNLD--------------------PEIMRDPDTGNSKG 203
G N+++ NLD +IMRD + G SKG
Sbjct: 304 KRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDAN-GVSKG 362
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL--------L 255
F+ +++ + M+G+ + +P+ V++A +K+ + + ++ +
Sbjct: 363 SGFVAFSTLPF--IQLTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQVRPVPMTPSM 420
Query: 256 AAQNPLSQADRP--HQLFADAPPPAPLPPPP 284
A + P+ P QLF PPA +PP P
Sbjct: 421 APRLPMYPPMAPLGQQLFYGQAPPAIMPPQP 451
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 41/210 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG L+ V+++ ++ELF Q+G VV+V + +D ++ GY ++ + DA A++
Sbjct: 122 TSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAME 181
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N L KPIRV ++ + G ANIFI NLD +D K L+DTFSAFG IL
Sbjct: 182 ALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKV 241
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
M+ D G SKGF F+ Y E
Sbjct: 242 AMD----------------------------------------DIGQSKGFGFVQYEKEE 261
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++ +++ +++G + ++P+ V +K +
Sbjct: 262 SAQSAMKSLNGMLINDKPVYVGPFLRKQER 291
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/324 (22%), Positives = 130/324 (40%), Gaps = 82/324 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + + + F G +++ + D + Q+ +G+GF+++ EE A A
Sbjct: 208 GSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQS-KGFGFVQYEKEESAQSA 266
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG-----ANIFIGNLDPEVDEKLLYDTFSAFGV 147
+K +N + + KP+ V Q+ + N+F+ NL ++ L FS +G
Sbjct: 267 MKSLNGMLINDKPVYVGPFLRKQERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGT 326
Query: 148 ILQTPKIMNM----------------------IKLYGKPI--------RVNKASSHQKNL 177
I ++ M +L GK I R K S + +L
Sbjct: 327 ITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDL 386
Query: 178 DV--------------GANIFIGNLD--------------------PEIMRDPDTGNSKG 203
G N+++ NLD +IMRD G SKG
Sbjct: 387 KRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRD-QNGVSKG 445
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F+++++ E + ++ M+G+ + +P+ V++A +K+ ER Q SQ
Sbjct: 446 SGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRKE----------ERKAMLQAQFSQ 495
Query: 264 ADRPHQLFADAPPPAPLPPPPPPI 287
RP + P P+ PP P +
Sbjct: 496 M-RPVPMTPSMTPRLPMYPPMPTL 518
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 120/263 (45%), Gaps = 55/263 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L +V+E +++E F +GP+++V + +D ++ GYG++ F EDA +A+
Sbjct: 19 ASLYVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGHALN 78
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
MN L+GKP+R+ G N+F+ +LD +D K LYD F+ FG IL
Sbjct: 79 TMNFDVLHGKPVRIMWCHRDPSLRRSGVGNVFVNHLDASIDNKELYDLFAGFGTILSCKV 138
Query: 153 -------------------------KIMN--MIK----LYGKPIRVNKASSHQK-NLDVG 180
K MN ++K G+ R N+ ++ ++
Sbjct: 139 VSDENGPKGHGFVHFETREAADKAIKEMNGSLVKERKVFVGQFKRPNQREEERRAKMEQF 198
Query: 181 ANIFIGNL--------------------DPEIMRDPDTGNSKGFAFINYASFEASDASID 220
N+++ N +IM D D+G SKGF FI + + +I+
Sbjct: 199 TNVYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTD-DSGKSKGFGFIRFECHADAKRAIE 257
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
++G+ R I VS A KK +
Sbjct: 258 EVNGKQFGGRKIYVSRAQKKKER 280
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV D ++ + E+F Q GP+ +V + D ++ +G+GFI F DA AI+ +
Sbjct: 201 VYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKS-KGFGFIRFECHADAKRAIEEV 259
Query: 97 NMIKLYGKPIRVNKASSHQKNLDV-----------------GANIFIGNLDPEVDEKLLY 139
N + G+ I V++A ++ + G ++F+ NL D++ L
Sbjct: 260 NGKQFGGRKIYVSRAQKKKEREEELQQKLEEIKQNRIAKYHGMSLFVKNLAESTDDEHLR 319
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
F+ FG + I+ G
Sbjct: 320 KIFAPFGTVTSAKVIVK-----------------------------------------GG 338
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
KGF F++++S E + +++ MHG+ L RP+ VSYA K +
Sbjct: 339 RRKGFGFVSFSSREEAKKAVEEMHGKMLSARPLYVSYARYKQER 382
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 41/210 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG L+ V+++ ++ELF Q+G VV+V + +D ++ GY ++ F DA A++
Sbjct: 37 TSLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMDAARALE 96
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
++N + L KPIRV ++ + G ANIFI NLD +D K L+DTFSAFG IL
Sbjct: 97 MLNFVPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSC-- 154
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ D D G SKGF F+ Y E
Sbjct: 155 -------------------------------------KVATD-DMGQSKGFGFVQYEKEE 176
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ +++ +++G + ++P+ V +K +
Sbjct: 177 FAQSAMKSLNGMLINDKPVYVGPFLRKQER 206
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 132/324 (40%), Gaps = 82/324 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + + + F G +++ + D + Q+ +G+GF+++ EE A A
Sbjct: 123 GSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVATDDMGQS-KGFGFVQYEKEEFAQSA 181
Query: 93 IKIMNMIKLYGKPIRVN---KASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGV 147
+K +N + + KP+ V + + D N+F+ NL ++ L FS +G
Sbjct: 182 MKSLNGMLINDKPVYVGPFLRKQERDNSFDKARFNNVFVKNLSESTTKEDLVKIFSEYGN 241
Query: 148 I--------------------LQTP--KIMNMIKLYGKPI--------RVNKASSHQKNL 177
I ++P + + +L GK I R K S + +L
Sbjct: 242 ITSAVVMVGTDGKSRCFGFINFESPDDAVRAVEELNGKKINDKEWYCGRAQKKSEREMDL 301
Query: 178 DV--------------GANIFIGNLDP--------------------EIMRDPDTGNSKG 203
G N+++ NLD ++MRD + G SKG
Sbjct: 302 KRRFEQSMKDAADKYQGQNLYLKNLDDGISDDQLRELFSTFGKITSCKVMRDQN-GVSKG 360
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F+ +++ E + +I M+G+ L +P+ V++A +K+ ER Q SQ
Sbjct: 361 SGFVAFSTREEASQAITEMNGKMLSGKPLYVAFAQRKE----------ERKAMLQAQFSQ 410
Query: 264 ADRPHQLFADAPPPAPLPPPPPPI 287
RP + P P+ PP P+
Sbjct: 411 M-RPVPITPSMTPRLPMYPPMAPL 433
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 116/261 (44%), Gaps = 54/261 (20%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG LD V++ +++LF Q VV+V + +D TQ GYG++ F DA AI +
Sbjct: 25 SLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNARDAAKAIDV 84
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP-- 152
+N L GK IR+ + G AN+FI NLD +D K L+DTFSAFG IL
Sbjct: 85 LNFTPLNGKTIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALFDTFSAFGNILSCKIA 144
Query: 153 ------------------------------KIMNMIKLYGKPIRVNKASSHQKNLDVGAN 182
++N ++Y P + + + N
Sbjct: 145 TDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVYVGPFQRKQDRESALSGTKFNN 204
Query: 183 IFIGNL--------------------DPEIMRDPDTGNSKGFAFINYASFEASDASIDAM 222
+++ NL +MRD D G SKGF F+N+A+ E + +++A+
Sbjct: 205 VYVKNLFEATTEADLKSIFGEYGAITSAVVMRDVD-GKSKGFGFVNFANVEDAAKAVEAL 263
Query: 223 HGQYLCNRPISVSYAFKKDSK 243
+G+ + V A KK +
Sbjct: 264 NGKNFDGKEWYVGKAQKKSER 284
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 113/274 (41%), Gaps = 69/274 (25%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
SG +YV L + +E + +F + G + + + +D V +G+GF+ F EDA
Sbjct: 198 SGTKFNNVYVKNLFEATTEADLKSIFGEYGAITSAVVMRD-VDGKSKGFGFVNFANVEDA 256
Query: 90 DYAIKIMNMIKLYGKPIRVNKASSH-QKNLDV----------------GANIFIGNLDPE 132
A++ +N GK V KA ++ L++ G N++I NLD
Sbjct: 257 AKAVEALNGKNFDGKEWYVGKAQKKSERELELKERNEQSTKETVDKYHGTNLYIKNLDDS 316
Query: 133 VDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
V ++ L + FS FG I ++
Sbjct: 317 VGDEELRELFSEFGTITSC---------------------------------------KV 337
Query: 193 MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
MRDP +G S+G F+ ++ E + ++ M+G+ + +P+ V+ A +K+ + R
Sbjct: 338 MRDP-SGISRGSGFVAFSIAEGASWALGEMNGKMVAGKPLYVALAQRKEDRRAR------ 390
Query: 253 RLLAAQNPLSQADRPHQLFADAPPPAPLPPPPPP 286
L AQ SQA RP + + P PL P P
Sbjct: 391 --LQAQ--FSQA-RPVAITPNVSPRMPLYPLGAP 419
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 124/271 (45%), Gaps = 56/271 (20%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
+G +A++YVG LD + E +++LF Q PV+++ + +D+ + GY ++ F +DA
Sbjct: 34 AGFANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDA 93
Query: 90 DYAIKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVI 148
A++ +N L GKPIR+ + G AN+FI NLDP +D K L DTF+AFG +
Sbjct: 94 TNALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTV 153
Query: 149 LQTP---------------------------KIMNMIKLYGKPIRVNKASSHQ-KNLDVG 180
L K +N + + K + V HQ +N G
Sbjct: 154 LSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNXGNG 213
Query: 181 A----NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASD 216
+ N+++ NL +MRD +G SK F F+N+ S +++
Sbjct: 214 SPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDA-SGMSKCFGFVNFQSSDSAA 272
Query: 217 ASIDAMHGQYLCNRPISVSYAFKKDSKGDRH 247
A+++ ++G + V Y K K +R
Sbjct: 273 AAVEHLNGATFNDD--KVWYVGKAQRKSERE 301
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 48/176 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI--------------------------- 154
A++++G+LD + E LYD F +L
Sbjct: 39 ASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALE 98
Query: 155 -MNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEIMRDP---------------- 196
+N L GKPIR+ + G AN+FI NLDP I
Sbjct: 99 HLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSCKI 158
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
+ G SKG+ F+ + EA+ +I ++G + ++ + V + + +GS
Sbjct: 159 ALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNXGNGS 214
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ LDD V++ + ELF + G + + + D +G GF+ F+ E+A A+ +M
Sbjct: 324 LYLKNLDDSVNDEKLXELFSEFGTITSCKVMLD-PQGLSKGSGFVAFLTPEEATRALNVM 382
Query: 97 NMIKLYGKPIRVNKASSHQK 116
N + KP+ V A ++
Sbjct: 383 NGKMIGRKPLYVAVAQRKEE 402
>gi|353227476|emb|CCA77984.1| related to mRNA polyadenylate-binding protein PAB1 [Piriformospora
indica DSM 11827]
Length = 693
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 124/268 (46%), Gaps = 57/268 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ D + A++
Sbjct: 110 ASLYVGELDPSVTEAILFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNSSDGERALE 169
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDV----GANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
+N + GKP V++ Q++ + NIFI NLD +D K L+DTF AFG +L
Sbjct: 170 QLNYSLIKGKPWHVSRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFVAFGNVLS 229
Query: 151 TP--------------------------------KIMNMIKLY-GKPI-RVNKASSHQKN 176
++N K+Y G+ I R + S +
Sbjct: 230 CKVAVDEQGNSKGYGFVHYETAEAADAAIKAVDGMLLNDKKVYVGRHIPRKERQSKLDEI 289
Query: 177 LDVGANIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDA 217
NI++ NLD EI D G SKGF F+NY + E +
Sbjct: 290 RAQFTNIYVKNLDTEIDEDEFRKLFEPYGTITSAVLNLDADGKSKGFGFVNYETHEMAQK 349
Query: 218 SIDAMHGQYLCNRPISVSYAFKKDSKGD 245
++DA++ + + + + V A K++ + +
Sbjct: 350 AVDALNEKDINGKKLFVGRAQKRNERDE 377
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 58/226 (25%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
IYV LD ++ E +LF G + + + D ++ +G+GF+ + E A A+
Sbjct: 294 TNIYVKNLDTEIDEDEFRKLFEPYGTITSAVLNLDADGKS-KGFGFVNYETHEMAQKAVD 352
Query: 95 IMNMIKLYGKPIRVNKASSH-------QKNLDV----------GANIFIGNLDPEVDEKL 137
+N + GK + V +A ++ D G N++I N+D ++D++
Sbjct: 353 ALNEKDINGKKLFVGRAQKRNERDEELRRTFDAAKMERLAKLQGVNLYIKNIDDDMDDEK 412
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L F +G I + +IMRD D
Sbjct: 413 LRAEFEPYGTITSS---------------------------------------KIMRD-D 432
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ +++ + + +I M+ + + ++P+ VS A ++D +
Sbjct: 433 KGVSKGFGFVCFSTPDEATRAIAEMNNKMIGSKPLYVSLAQRRDVR 478
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 117/246 (47%), Gaps = 57/246 (23%)
Query: 50 LMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV- 108
+++E F +GPV+++ + +D +T+ GY ++ F DA+ A+ MN + GKPIR+
Sbjct: 1 MLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIM 60
Query: 109 -NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI------------- 154
++ + VG N+FI NLD +D K LYDTFSAFG IL +
Sbjct: 61 WSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVH 119
Query: 155 -------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPE--- 191
MN + L + + V + S ++ ++GA N++I N E
Sbjct: 120 FETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDD 179
Query: 192 -----------------IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234
+MRDP +G SKGF F++Y E ++ +++ M+G+ + + I V
Sbjct: 180 ESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 238
Query: 235 SYAFKK 240
A KK
Sbjct: 239 GRAQKK 244
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 72 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 129
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 130 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 189
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 190 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 249
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 250 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 309
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 310 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 349
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 22/119 (18%)
Query: 155 MNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP------------ 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 47 MNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCKV 105
Query: 197 --DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 106 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 164
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 125/266 (46%), Gaps = 61/266 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+++YVG L V+E +++E+F G ++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRVNKASSHQ----KNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
MN + G+PIR+ SH+ + +G NIFI NL+ +D K LYDTFS FG IL
Sbjct: 71 TMNFEMIKGQPIRI--MWSHRDPGLRRSGMG-NIFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 151 TPKI--------------------------MNMIKLYGKPIRVNKASSHQKN-LDVGA-- 181
+ + MN + L + + V S QK ++GA
Sbjct: 128 SKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARA 187
Query: 182 ----NIFIGNL--------------------DPEIMRDPDTGNSKGFAFINYASFEASDA 217
NI++ NL ++MRD + G S+GF FIN+ E +
Sbjct: 188 LGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSN-GQSRGFGFINFEKHEEAQK 246
Query: 218 SIDAMHGQYLCNRPISVSYAFKKDSK 243
++D M+G+ + + + V A K+ +
Sbjct: 247 AVDHMNGKEVSGQLLYVGRAQKRAER 272
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 100/233 (42%), Gaps = 59/233 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G IYV L + E + +LF Q G +V + +D Q+ +G+GFI F E
Sbjct: 184 GARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQS-RGFGFINFEKHE 242
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSH-----------------QKNLDVGANIFIGNLD 130
+A A+ MN ++ G+ + V +A ++N G N+++ NLD
Sbjct: 243 EAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLD 302
Query: 131 PEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 190
+++ L + FS +GVI + K+M
Sbjct: 303 DSINDDRLKEVFSTYGVIT-SAKVMT---------------------------------- 327
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++ +SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 328 ------ESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 129/280 (46%), Gaps = 58/280 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 60 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 119
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + GA NIFI NLD +D K L+DTF+AFG IL
Sbjct: 120 ELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKV 179
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 180 AQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 239
Query: 182 --NIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASDASI 219
N+++ N++ E+ RD + G ++GF F+N+ + EA+ ++
Sbjct: 240 FTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKTRGFGFVNFTTHEAAAQAV 298
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
D ++G+ + + V A KK + + R A RL A
Sbjct: 299 DELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKA 338
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 122/259 (47%), Gaps = 23/259 (8%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV ++++V++ ELF + G V + + +D+ +T +G+GF+ F E A A+ +
Sbjct: 243 VYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKT-RGFGFVNFTTHEAAAQAVDEL 301
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N G+ + V +A H++ ++ G N++I NL +VD+ L
Sbjct: 302 NGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLR 361
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGN-LDPEIMRDPDT 198
FS +G I + K+M + G + K ++K + G+ E D
Sbjct: 362 AMFSEYGPIT-SAKVMRDSLIEGSEEKDEKDKENKKEGEAEEEQKEGSEKKTEKKGDRKL 420
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA--AERLLA 256
G SKGF F+ +++ + + ++ M+ + + +P+ V+ A +KD + + ++ A L
Sbjct: 421 GKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQARNQLR 480
Query: 257 AQNPLSQADRPHQLFADAP 275
Q +QA P Q + AP
Sbjct: 481 MQQAAAQAGMPQQ-YMQAP 498
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 123/264 (46%), Gaps = 55/264 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 54 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 113
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 114 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 173
Query: 154 IMNMI---KLYG-----------KPIR-VNKASSHQKNLDVG------------------ 180
+ K YG I+ VN ++K + VG
Sbjct: 174 AQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKAN 233
Query: 181 -ANIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASDASI 219
N+++ NL+PE+ RD +TG S+GF F+N+ + +++ A++
Sbjct: 234 FTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAV 293
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ ++ + + + V A KK +
Sbjct: 294 EDLNDKEYKGQKLYVGRAQKKHER 317
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 118/258 (45%), Gaps = 35/258 (13%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV L+ +V+ ELF + G + + + +D T +G+GF+ F+ + A A++ +
Sbjct: 237 VYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDL 296
Query: 97 NMIKLYGKPIRVNKAS-SHQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N + G+ + V +A H++ ++ G N+++ NL ++D++ L
Sbjct: 297 NDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLR 356
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASS--HQKNLDVGANIFIGNLDPEIMRD-- 195
D F FG I + + I G K +S +++N+ G D D
Sbjct: 357 DLFIGFGNITSARVMRDTIGDAGSESEKEKEASKDNKENVKEETKKEAGGEDSAEKTDKA 416
Query: 196 --PDT--------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
PDT G SKGF F+ +++ + + ++ M+ + + +P+ V+ A +KD +
Sbjct: 417 EKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR-- 474
Query: 246 RHGSAAERLLAAQNPLSQ 263
S E + A+N + Q
Sbjct: 475 --KSQLEASIQARNTIRQ 490
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 41/210 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG L+ VS++ ++ELF Q+G VV+V + +D ++ GY ++ F DA A++
Sbjct: 40 TSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLDAARALE 99
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
++N L KPIRV ++ + G ANIFI NLD +D K L++TFS+FG IL
Sbjct: 100 VLNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKMIDNKSLHETFSSFGTILSCKV 159
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
M+ + G SKGF F+ Y E
Sbjct: 160 AMD----------------------------------------EGGQSKGFGFVQYEKEE 179
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
A+ +I +++G + ++P+ V +K +
Sbjct: 180 AAQNAIKSLNGMLINDKPVFVGPFLRKQER 209
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 130/330 (39%), Gaps = 80/330 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + + E F G +++ + D Q+ +G+GF+++ EE A A
Sbjct: 126 GSANIFIKNLDKMIDNKSLHETFSSFGTILSCKVAMDEGGQS-KGFGFVQYEKEEAAQNA 184
Query: 93 IKIMNMIKLYGKPIRV-----NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
IK +N + + KP+ V + H + N+F+ NL ++ L F +G
Sbjct: 185 IKSLNGMLINDKPVFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGN 244
Query: 148 ILQTPKIMNM----------------------IKLYGKPI--------RVNKASSHQKNL 177
I ++ M +L GK I R K S + L
Sbjct: 245 ITSAVVMIGMDGKSRCFGFINFENPDAASRAVQELNGKKINDKEWYVGRAQKKSEREMEL 304
Query: 178 DV--------------GANIFIGNLDPEI--------------------MRDPDTGNSKG 203
G N+++ NLD I MRD G SKG
Sbjct: 305 KRRFEQILKDAADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSCKVMRD-QNGLSKG 363
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL--------- 254
F+ +++ E + ++ M+G+ + +P+ V++A +K+ + + ++
Sbjct: 364 SGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMRPAVPMTPT 423
Query: 255 LAAQNPLSQADRPHQLFADAPPPAPLPPPP 284
LA + P+ P QLF PPA +PP P
Sbjct: 424 LAPRLPMYPPMAPQQLFYGQAPPAMIPPQP 453
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 131/278 (47%), Gaps = 64/278 (23%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED---AD 90
++++YVG L+ V+E ++ELF GPV ++ + +D VT+ GY ++ + D A+
Sbjct: 20 NSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAAE 79
Query: 91 YAIKIMNMIKLYGKPIRVNKASSHQ----KNLDVGANIFIGNLDPEVDEKLLYDTFSAFG 146
A++ +N L GKP+R+ SH+ + VG NIFI NLD +D K L+DTFSAFG
Sbjct: 80 RAMETLNYHVLNGKPMRI--MWSHRDPSARKSGVG-NIFIKNLDKSIDAKALHDTFSAFG 136
Query: 147 VILQTP---------------------------KIMNMIKLYGKPIRV---NKASSHQKN 176
IL + +N ++ GK + V K + +
Sbjct: 137 KILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRADRPQG 196
Query: 177 LDVGANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASD 216
DV N+F+ NL E +M+D + G+SKGF FIN+ E +
Sbjct: 197 KDVYTNVFVKNLPAELGDDELSKMATEFGEVTSAVVMKD-EKGSSKGFGFINFKDAECAA 255
Query: 217 ASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
++A++ + + + V YA + K +R +++
Sbjct: 256 KCVEALNDKEIGGK---VLYAGRAQKKTEREAMLRQKV 290
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 115/277 (41%), Gaps = 67/277 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + + F G +++ + D +GYGF+ F + AD A
Sbjct: 110 GVGNIFIKNLDKSIDAKALHDTFSAFGKILSCKVATD-ANGVSKGYGFVHFEDQAAADRA 168
Query: 93 IKIMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFG--- 146
I+ +N ++ GK + V K + + DV N+F+ NL E+ + L + FG
Sbjct: 169 IQTVNQKEIEGKIVYVGPFQKRADRPQGKDVYTNVFVKNLPAELGDDELSKMATEFGEVT 228
Query: 147 --VILQTPK----------------------IMNMIKLYGKPIRVNKA------------ 170
V+++ K +N ++ GK + +A
Sbjct: 229 SAVVMKDEKGSSKGFGFINFKDAECAAKCVEALNDKEIGGKVLYAGRAQKKTEREAMLRQ 288
Query: 171 ----SSHQKNLDV-GANIFIGNLDPEI----MRD--------------PDT-GNSKGFAF 206
S ++ L G N+++ NL E+ +RD DT G SKGF F
Sbjct: 289 KVEESKQERYLKYQGMNLYVKNLADEVDDDALRDLFTSCGTITSCKVMKDTSGKSKGFGF 348
Query: 207 INYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ + S + + ++ M+G+ + +P+ V+ A +KD +
Sbjct: 349 VCFTSHDEATRAVTEMNGKMVKGKPLYVALAQRKDVR 385
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 127/279 (45%), Gaps = 56/279 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 49 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 108
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 109 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 168
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 169 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 228
Query: 182 --NIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
N++I N+D ++ + G S+GF F+N+++ E++ A++D
Sbjct: 229 FTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVD 288
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
M+ + + + + V A KK + + R A RL A
Sbjct: 289 EMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKA 327
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 110/245 (44%), Gaps = 40/245 (16%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ +D V+E ELF + G + + + +D+ ++ +G+GF+ F E A A+ M
Sbjct: 232 VYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKS-RGFGFVNFSTHESAQAAVDEM 290
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N ++ + + V +A H++ ++ G N+++ NL +VD++ L
Sbjct: 291 NEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 350
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPI------RVNKASSHQKNLDVG------------A 181
+ F +G I + K+M + + NK ++ + + A
Sbjct: 351 ELFGPYGTIT-SAKVMRDTNIERTQTPESDKEKENKEATKENEKESSEAEKAEKTEEKPA 409
Query: 182 NIFIGNLDPEIMRDPDT---GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238
+ + + + D G SKGF F+ ++S + + ++ M+ + + +P+ V+ A
Sbjct: 410 DSGDEKKEDKESKKADKKGLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 469
Query: 239 KKDSK 243
+KD +
Sbjct: 470 RKDVR 474
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 127/279 (45%), Gaps = 56/279 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 49 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 108
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 109 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 168
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 169 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 228
Query: 182 --NIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
N++I N+D ++ + G S+GF F+N+++ E++ A++D
Sbjct: 229 FTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVD 288
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
M+ + + + + V A KK + + R A RL A
Sbjct: 289 EMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKA 327
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 110/245 (44%), Gaps = 40/245 (16%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ +D V+E ELF + G + + + +D+ ++ +G+GF+ F E A A+ M
Sbjct: 232 VYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKS-RGFGFVNFSTHESAQAAVDEM 290
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N ++ + + V +A H++ ++ G N+++ NL +VD++ L
Sbjct: 291 NEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 350
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPI------RVNKASSHQKNLDVG------------A 181
+ F +G I + K+M + + NK ++ + + A
Sbjct: 351 ELFGPYGTIT-SAKVMRDTNIERTQTPESDKEKENKEATKENEKESSEAEKAEKTEEKPA 409
Query: 182 NIFIGNLDPEIMRDPDT---GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238
+ + + + D G SKGF F+ ++S + + ++ M+ + + +P+ V+ A
Sbjct: 410 DSGDEKKEDKESKKADKKGLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 469
Query: 239 KKDSK 243
+KD +
Sbjct: 470 RKDVR 474
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 122/261 (46%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D ++ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+P+R+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFEVIKGRPVRIMWSQRDPGLRKSGVG-NVFIKNLDDSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V S ++ + GA
Sbjct: 130 VVCDENGSRGHGFVHFETQEAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEFGARAME 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D +TG SKGF F+N+ E + ++
Sbjct: 190 FTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-NTGRSKGFGFVNFEKHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
M+G+ + R + V A K+
Sbjct: 249 ADMNGKEINGRMVYVGRAQKR 269
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 118/285 (41%), Gaps = 71/285 (24%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G +++ LDD + +++ F G +++ + D +G+GF+ F +E
Sbjct: 92 GLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI+ MN + L + + V S ++ + GA N++I N ++D+ L +
Sbjct: 150 AATRAIETMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLRE 209
Query: 141 TFSAFGVILQTPKIMN----------------------MIKLYGKPI------------R 166
FS FG L +M+ + + GK I R
Sbjct: 210 IFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKR 269
Query: 167 VNKASSHQKNLDV----------GANIFIGNLDP----EIMRD--------------PDT 198
+ + S ++ + G N+++ NLD E +R +
Sbjct: 270 LERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEG 329
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 106/218 (48%), Gaps = 44/218 (20%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G ++YVG LD V+++ ++E F Q+G VV+V + +D T+ GYG++ + +DA A
Sbjct: 43 GTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 102
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
+ +N + L G+ IRV + G NIFI NLD +D K L++TFSAFG IL
Sbjct: 103 LNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSC 162
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
++ DP +G SKG+ F+ Y +
Sbjct: 163 ---------------------------------------KVAVDP-SGQSKGYGFVQYDT 182
Query: 212 FEASDASIDAMHGQYLCNRPISVS---YAFKKDSKGDR 246
EA+ +ID ++G L ++ + V + ++D G++
Sbjct: 183 DEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEK 220
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 126/331 (38%), Gaps = 82/331 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + E F GP+++ + D Q+ +GYGF+++ +E A A
Sbjct: 131 GVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQS-KGYGFVQYDTDEAAQGA 189
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG-----ANIFIGNLDPEVDEKLLYDTFSAFGV 147
I +N + L K + V + G N+++ NL + ++ L F FGV
Sbjct: 190 IDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGV 249
Query: 148 ILQTPKIMN----------------------MIKLYGKPI--------RVNKASSHQKNL 177
+ + + L GK + K S + L
Sbjct: 250 TTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETEL 309
Query: 178 --------------DVGANIFIGNLDP--------------------EIMRDPDTGNSKG 203
G+N+++ NLD ++MRDP +G S+G
Sbjct: 310 KQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRG 368
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F+ +++ E + +I M+G+ + +P+ V+ A +K+ + R + ++ P +
Sbjct: 369 SGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAV 428
Query: 264 ADR-----------PHQLFADAPPPAPLPPP 283
R QLF PPA +P P
Sbjct: 429 GPRMQMYPPGGPPMGQQLFYGQGPPAMIPQP 459
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 123/264 (46%), Gaps = 55/264 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 54 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 113
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 114 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 173
Query: 154 IMNMI---KLYG-----------KPIR-VNKASSHQKNLDVG------------------ 180
+ K YG I+ VN ++K + VG
Sbjct: 174 AQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKAN 233
Query: 181 -ANIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASDASI 219
N+++ NL+PE+ RD +TG S+GF F+N+ + +++ A++
Sbjct: 234 FTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAV 293
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ ++ + + + V A KK +
Sbjct: 294 EDLNDKEYKGQKLYVGRAQKKHER 317
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 124/278 (44%), Gaps = 39/278 (14%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV L+ +V+ ELF + G + + + +D T +G+GF+ F+ + A A++ +
Sbjct: 237 VYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDL 296
Query: 97 NMIKLYGKPIRVNKA-SSHQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N + G+ + V +A H++ ++ G N+++ NL ++D++ L
Sbjct: 297 NDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLR 356
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASS--HQKNLDVGANIFIGNLDPEIMRD-- 195
D F FG I + + I G K +S +++N+ G D D
Sbjct: 357 DLFIGFGNITSARVMRDTIGDAGSESEKEKEASKDNKENVREETKKEAGGEDSAEKTDKA 416
Query: 196 --PDT--------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
PDT G SKGF F+ +++ + + ++ M+ + + +P+ V+ A +KD +
Sbjct: 417 EKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR-- 474
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFADAPPPAPLPPP 283
S E + A+N + R Q+ A A P P
Sbjct: 475 --KSQLEASIQARNTI----RQQQVAAAAGMSQPFMQP 506
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 123/264 (46%), Gaps = 55/264 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 54 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 113
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 114 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 173
Query: 154 IMNMI---KLYG-----------KPIR-VNKASSHQKNLDVG------------------ 180
+ K YG I+ VN ++K + VG
Sbjct: 174 AQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKAN 233
Query: 181 -ANIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASDASI 219
N+++ NL+PE+ RD +TG S+GF F+N+ + +++ A++
Sbjct: 234 FTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAV 293
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ ++ + + + V A KK +
Sbjct: 294 EDLNDKEYKGQKLYVGRAQKKHER 317
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 118/258 (45%), Gaps = 35/258 (13%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV L+ +V+ ELF + G + + + +D T +G+GF+ F+ + A A++ +
Sbjct: 237 VYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDL 296
Query: 97 NMIKLYGKPIRVNKA-SSHQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N + G+ + V +A H++ ++ G N+++ NL ++D++ L
Sbjct: 297 NDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLR 356
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASS--HQKNLDVGANIFIGNLDPEIMRD-- 195
D F FG I + + I G K +S +++N+ G D D
Sbjct: 357 DLFIGFGNITSARVMRDTISDAGSESEKEKEASKDNKENVKEETKKEAGGEDSAEKTDKA 416
Query: 196 --PDT--------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
PDT G SKGF F+ +++ + + ++ M+ + + +P+ V+ A +KD +
Sbjct: 417 EKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR-- 474
Query: 246 RHGSAAERLLAAQNPLSQ 263
S E + A+N + Q
Sbjct: 475 --KSQLEASIQARNTIRQ 490
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 128/273 (46%), Gaps = 61/273 (22%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G +++YVG L V+E++++E+F G ++++ + +D T+ GY +I F
Sbjct: 4 GGHGCSLSSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQ----KNLDVGANIFIGNLDPEVDEKLLYDTFS 143
DA+ A+ MN + G+PIR+ SH+ + +G NIFI NL+ +D K LYDTFS
Sbjct: 64 DAERALDTMNFEVIKGQPIRI--MWSHRDPGLRKSGMG-NIFIKNLENSIDNKALYDTFS 120
Query: 144 AFGVILQTPKI--------------------------MNMIKLYGKPIRVNKASSHQKN- 176
FG IL + + MN + L + + V S QK
Sbjct: 121 TFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKRE 180
Query: 177 LDVGA------NIFIGNLDP--------------------EIMRDPDTGNSKGFAFINYA 210
++GA NI++ NL ++MRD + G S+GF F+N+
Sbjct: 181 AELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSN-GQSRGFGFVNFE 239
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
E + ++D M+G+ + + + V A K+ +
Sbjct: 240 KHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAER 272
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 59/233 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G IYV L V E + +LF Q G + +V + +D Q+ +G+GF+ F E
Sbjct: 184 GARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQS-RGFGFVNFEKHE 242
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSH-----------------QKNLDVGANIFIGNLD 130
+A A+ MN ++ G+ + V +A ++N G N+++ NLD
Sbjct: 243 EAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLD 302
Query: 131 PEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 190
++++ L + FS +GVI + K+M
Sbjct: 303 DSINDERLKEVFSTYGVIT-SAKVMT---------------------------------- 327
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++ +SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 328 ------ESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 125/279 (44%), Gaps = 56/279 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 60 ASLYVGELDPAVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALE 119
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 120 ELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 179
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 180 AQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 239
Query: 182 --NIFIGNLDPEIMRD-------------------PDTGNSKGFAFINYASFEASDASID 220
N+++ N+ PE D G S+GF F+N+ + E++ ++D
Sbjct: 240 FTNVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKSRGFGFVNFTTHESAAKAVD 299
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
++G+ + + V A KK + + R A RL A
Sbjct: 300 ELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKA 338
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 107/239 (44%), Gaps = 39/239 (16%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+YV + + +E +LF Q G V + + +D+ ++ +G+GF+ F E A A+
Sbjct: 242 NVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKS-RGFGFVNFTTHESAAKAVDE 300
Query: 96 MNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N G+ + V +A H++ ++ G N++I NLD +VD+ L
Sbjct: 301 LNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDKL 360
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
FS FG I + K+M + + + + ++ N PE ++ +
Sbjct: 361 RQMFSEFGPIT-SAKVMRDTPVENEDEKPAEEKKEEQEDKDKEN------KPEETKEGEE 413
Query: 199 G--------------NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ +++ + + ++ M+ + + N+P+ V+ A +KD +
Sbjct: 414 GAEKKAEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVSNKPLYVALAQRKDVR 472
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 125/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E ++++ F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADAECALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG NIFI N+D +D K LYDTFSAFG IL
Sbjct: 71 TMNYDVIKGRPIRIMWSQRDPGLRKSGVG-NIFIKNMDESIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V S ++ ++ G+
Sbjct: 130 VVCDEKGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGSKAMK 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L +M+D + G S+GF F+NYA E + ++
Sbjct: 190 FTNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKD-EKGRSRGFGFVNYAHHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + + V A K+
Sbjct: 249 NEMNGKEINGKILYVGRAQKR 269
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 96/227 (42%), Gaps = 65/227 (28%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + ++ + E+F G ++V + KD ++ +G+GF+ + EDA A+ M
Sbjct: 193 VYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRS-RGFGFVNYAHHEDAQKAVNEM 251
Query: 97 NMIKLYGKPIRVNKASSHQKNLDV--------------------GANIFIGNLDPEVDEK 136
N ++ GK + V +A QK L+ G N+++ NLD +D++
Sbjct: 252 NGKEINGKILYVGRA---QKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKNLDDSIDDE 308
Query: 137 LLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196
L F+ +G I + K+M
Sbjct: 309 RLRKEFAPYGTIT-SAKVMT---------------------------------------- 327
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
D SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +++ +
Sbjct: 328 DGSQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRREER 374
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 49/181 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY FS G I+ Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADAECALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + G+PIR+ ++ + VG NIFI N+D I + D
Sbjct: 71 TMNYDVIKGRPIRIMWSQRDPGLRKSGVG-NIFIKNMDESIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
D SKG+ F+++ + EA++ +I+ M+G L +R + V + + + GS A +
Sbjct: 130 VVCDEKGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGSKAMK 189
Query: 254 L 254
Sbjct: 190 F 190
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 128/280 (45%), Gaps = 58/280 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 50 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 109
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 110 DLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 169
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 170 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 229
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N+++ N+DPE I RD D+G S+GF F+NY + + +++
Sbjct: 230 FTNVYVKNIDPEVTDEEFRELFGKYGDITSATISRD-DSGKSRGFGFVNYVDHQNAQSAV 288
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
D ++ + ++ + V A KK + + R A RL A
Sbjct: 289 DELNDKDFHSQKLYVGRAQKKHEREEELRRQYEAARLEKA 328
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/232 (19%), Positives = 107/232 (46%), Gaps = 26/232 (11%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV +D +V++ ELF + G + + + +D ++ +G+GF+ ++ ++A A+ +
Sbjct: 233 VYVKNIDPEVTDEEFRELFGKYGDITSATISRDDSGKS-RGFGFVNYVDHQNAQSAVDEL 291
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N + + + V +A H++ ++ G N+++ NL +VD+ L
Sbjct: 292 NDKDFHSQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGVNLYVKNLTDDVDDDKLR 351
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT- 198
+ FS FG I + + + + + + +K + + + E +T
Sbjct: 352 ELFSPFGTITSAKVMRDTVGVSSDSDKEEGKEASEKEGEEASEKEETKVKAEDEEKTETK 411
Query: 199 -------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD +
Sbjct: 412 KPEKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 463
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 44/222 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L + V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 71 SMNFDVIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTFSAFGDILSCK 129
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
+ D SKG+ F+++A+
Sbjct: 130 VVC-----------------------------------------DENGSKGYGFVHFATE 148
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
EA++ SI+ ++G L + + V + + D G ++
Sbjct: 149 EAANKSIEKVNGMLLNGKKVYVGKFMSRKERYDAMGGQQKKF 190
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 122/294 (41%), Gaps = 77/294 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + M++ F G +++ + D +GYGF+ F EE A+ +
Sbjct: 97 GVGNVFIKNLDKSIDNKAMYDTFSAFGDILSCKVVCDE--NGSKGYGFVHFATEEAANKS 154
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG-------ANIFIGNLDPEVDEKLLYDTFSAF 145
I+ +N + L GK + V K S ++ D N+F+ N E+D++ L + F +
Sbjct: 155 IEKVNGMLLNGKKVYVGKFMSRKERYDAMGGQQKKFTNVFVKNFGDELDDEGLREMFERY 214
Query: 146 GVILQTPKIM-----------------------------NMIKLYGKPIRVNKAS----- 171
G I+ + K+M NM + G+ + V +A
Sbjct: 215 GKIV-SHKVMQDDHSGRNKGFGFVCFEDPIDAENACDDLNMKDINGRILYVGRAQKKIER 273
Query: 172 ------------SHQKNLDVGANIFIGNLDP----EIMRD--------------PDTGNS 201
+ + N G N+++ NLD E +R + G S
Sbjct: 274 QAELRNRFELMKAERANRYQGVNLYVKNLDDSLDDERLRKEFMPFGTITSAKVMSEGGRS 333
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLL 255
KGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ DR A + +
Sbjct: 334 KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKE---DRKAHLASQFM 384
>gi|388854914|emb|CCF51417.1| probable PAB1-mRNA polyadenylate-binding protein [Ustilago hordei]
Length = 648
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 118/261 (45%), Gaps = 53/261 (20%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ F+ D + A++
Sbjct: 46 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 105
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP-- 152
+N + +P R+ + G NIFI NLD +D K L+DTF+AFG IL
Sbjct: 106 LNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVA 165
Query: 153 -----------------------------KIMNMIKLY-GKPI-RVNKASSHQKNLDVGA 181
++N K+Y G I R + + +++
Sbjct: 166 TNDTGSLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRAKFT 225
Query: 182 NIFIGNLDPE-------------------IMRDPDTGNSKGFAFINYASFEASDASIDAM 222
N++ N+DPE +++ D G SKGF F+N+ E + ++D +
Sbjct: 226 NVYCKNVDPEVTDEQFEKLFTNYGKITSCVLQRDDDGKSKGFGFVNFEDHEEAQKAVDEL 285
Query: 223 HGQYLCNRPISVSYAFKKDSK 243
H + + V+ A KK +
Sbjct: 286 HDSDFHGQKLFVARAQKKSER 306
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 61/240 (25%)
Query: 21 QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGF 80
Q K+E ES +Y +D +V++ +LF G + + + +D ++ +G+GF
Sbjct: 214 QAKIE---ESRAKFTNVYCKNVDPEVTDEQFEKLFTNYGKITSCVLQRDDDGKS-KGFGF 269
Query: 81 IEFMGEEDADYAIKIMNMIKLYGKPI---RVNKASSHQKNLDV--------------GAN 123
+ F E+A A+ ++ +G+ + R K S ++ L G N
Sbjct: 270 VNFEDHEEAQKAVDELHDSDFHGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVN 329
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+++ N+ D++ L + F+ FG I
Sbjct: 330 LYLKNIPESYDDERLREEFAPFGTITSC-------------------------------- 357
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+IMR P +G S+GF F+ Y+ E ++ ++ M+G+ L NRP+ V+ A +KD +
Sbjct: 358 -------KIMRAP-SGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALAQRKDVR 409
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 129/280 (46%), Gaps = 58/280 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 52 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 111
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 112 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKV 171
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 172 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 231
Query: 182 --NIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASDASI 219
N++I N+D E+ RD + G S+GF F+N+++ +++ A++
Sbjct: 232 FTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHDSAQAAV 290
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
D M+ + + + + V A KK + + R A RL A
Sbjct: 291 DEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKA 330
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 108/232 (46%), Gaps = 27/232 (11%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ +D +V++ ++F + G + + + +D+ ++ +G+GF+ F + A A+ M
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKS-RGFGFVNFSTHDSAQAAVDEM 293
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N ++ G+ + V +A H++ ++ G N+++ NL +VD++ L
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 353
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT- 198
+ FS FG I + K+M G+ K + N + + + +
Sbjct: 354 ELFSPFGTIT-SAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEPK 412
Query: 199 -------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD +
Sbjct: 413 KTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 464
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 43/220 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKNIDNKAMYDTFSAFGNILSC- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D ++G SKG+ F+++ +
Sbjct: 129 --------------------------------------KVAQD-ESGASKGYGFVHFETE 149
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
EA++ SID ++G L + + V + + G A+
Sbjct: 150 EAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAK 189
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 129/280 (46%), Gaps = 58/280 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 52 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 111
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 112 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKV 171
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 172 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 231
Query: 182 --NIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASDASI 219
N++I N+D E+ RD + G S+GF F+N+++ +++ A++
Sbjct: 232 FTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHDSAQAAV 290
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
D M+ + + + + V A KK + + R A RL A
Sbjct: 291 DEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKA 330
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 106/230 (46%), Gaps = 25/230 (10%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ +D +V++ ++F + G + + + +D+ ++ +G+GF+ F + A A+ M
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKS-RGFGFVNFSTHDSAQAAVDEM 293
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N ++ G+ + V +A H++ ++ G N+++ NL +VD++ L
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 353
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT- 198
+ FS FG I + K+M G+ K K + E +
Sbjct: 354 ELFSPFGTIT-SAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKKT 412
Query: 199 -----GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD +
Sbjct: 413 EKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 462
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 124/278 (44%), Gaps = 56/278 (20%)
Query: 22 TKLEGGGESG-------DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQT 74
++L G SG A++YVG LD V+E +++ELF G V ++ + +D VT+
Sbjct: 51 SRLSAGANSGVPVSQNNSNSASLYVGELDPSVTEAMLFELFNNIGAVASIRVCRDAVTRR 110
Query: 75 HQGYGFIEFMGEEDA-----DYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGN 128
GY ++ F D + A+ +N + GKP R+ + G N+FI N
Sbjct: 111 SLGYAYVNFHNSSDVNLLTGERALDELNYTLIKGKPCRIMWSQRDPSLRKTGTGNVFIKN 170
Query: 129 LDPEVDEKLLYDTFSAFGVILQTPKIMNMI---KLYG--------------KPI----RV 167
LD +D K L+DTF+AFG IL ++ + K YG K + V
Sbjct: 171 LDASIDNKALHDTFTAFGSILSCKVAVDELGNSKGYGFVHYKTSESAEAAIKHVYVGHHV 230
Query: 168 NKASSHQKNLDVG---ANIFIGNLDPEI-------------------MRDPDTGNSKGFA 205
+K K D+ N+++ N+DPEI + + G S+GF
Sbjct: 231 SKKDRQSKFDDMKLKFTNVYVKNIDPEISEAEFEELFKKFGNVTSLSLSVDENGKSRGFG 290
Query: 206 FINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F+NY + E + +++ +H +R + V A KK +
Sbjct: 291 FVNYENHEDAARAVEELHDTEYKDRKLYVCRAQKKHER 328
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 120/288 (41%), Gaps = 65/288 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+YV +D ++SE ELF + G V ++ + D ++ +G+GF+ + EDA A++
Sbjct: 247 TNVYVKNIDPEISEAEFEELFKKFGNVTSLSLSVDENGKS-RGFGFVNYENHEDAARAVE 305
Query: 95 IMNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKL 137
++ + + + V +A H++ ++ G N+F+ NLD ++D++
Sbjct: 306 ELHDTEYKDRKLYVCRAQKKHEREEELRKQYEQAKLDKLNKYNGINLFVKNLDDDIDDER 365
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L FS +G I +IM D D
Sbjct: 366 LRQEFSIYGTITSA---------------------------------------KIMVD-D 385
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD---SKGDRHGSAAERL 254
G SKGF F+ ++S + + +I M+ + + +P+ V+ A +KD S+ + +A +L
Sbjct: 386 NGKSKGFGFVCFSSPDEATKAITEMNQRMVSGKPLYVALAQRKDVRRSQLESQINARNQL 445
Query: 255 LAAQNPLSQADRPHQLFADAPPPAPLPP----PPPPINIMGLPPPPPS 298
Q + P AP P P P+ G+P P P+
Sbjct: 446 RIQQQAAAAGMSPQYGMPGAPMFYGQGPTGFMPAGPMTDRGMPFPQPA 493
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 120/267 (44%), Gaps = 61/267 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 58 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 117
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 118 DLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 177
Query: 153 -------------------------------KIMNMIKLY-----GKPIRVNKASSHQKN 176
++N K++ K R +K + N
Sbjct: 178 AQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKAN 237
Query: 177 LDVGANIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASD 216
NI++ N++ ++ RD +TG S+GF F+N++ EA+
Sbjct: 238 F---TNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAAS 294
Query: 217 ASIDAMHGQYLCNRPISVSYAFKKDSK 243
A+++ ++ L + + V A KK +
Sbjct: 295 AAVEGLNEYELKGQKLYVGRAQKKHER 321
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 114/266 (42%), Gaps = 43/266 (16%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV ++ V++ LF + G + + + +D T +G+GF+ F E A A++ +
Sbjct: 241 IYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGL 300
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N +L G+ + V +A H++ ++ G N++I NL ++D++ L
Sbjct: 301 NEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 360
Query: 140 DTFSAFGVILQTPKIMNMIK--------------------LYGKPIRVNKASSHQKNLDV 179
+ FS++G I + I KP + S +K+ D
Sbjct: 361 ELFSSYGNITSAKVMREAISDVPADAEKDKEADKEKAKKETGDKPEDKAETKSDEKSEDK 420
Query: 180 GAN--IFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
+ G D G SKGF F+ +++ + + ++ M+ + + +P+ V+ A
Sbjct: 421 SKSEEKTEGKTDGAKTEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALA 480
Query: 238 FKKDSKGDRHGSAAERLLAAQNPLSQ 263
+KD + S E + A+N + Q
Sbjct: 481 QRKDVR----KSQLEASIQARNTIRQ 502
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 128/280 (45%), Gaps = 60/280 (21%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
SG A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 90 DYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
+ A+ MN L G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG
Sbjct: 66 ERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGN 124
Query: 148 IL--------------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVG 180
IL Q MN + L + + V S ++ ++G
Sbjct: 125 ILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELG 184
Query: 181 A------NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEA 214
A NI++ N L ++MRD ++G+S+ F F+N+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
+ ++ M+G+ + R + YA + + +R R
Sbjct: 244 AQKAVVHMNGKEVSGRLL---YAGRAQKRVERQNELKRRF 280
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 114/284 (40%), Gaps = 69/284 (24%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV L V E + +LF Q G +++V + +D + + +GF+ F E+A A+ M
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHS-RCFGFVNFEKHEEAQKAVVHM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N ++ G+ + R K Q L G N+++ NLD +D+ L
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS +GVI + K+M + G
Sbjct: 312 KEFSPYGVIT-SAKVMT----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK----GDRHGSAAERLL 255
+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + +++ +
Sbjct: 331 HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMR 390
Query: 256 AAQNP-LSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPPS 298
NP L +P F A +P PP G P P+
Sbjct: 391 TLSNPLLGSFQQPSSYFLPA-----MPQPPAQAAYYGCGPVTPT 429
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 52/186 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN L G+PIR+ ++ + VG NIFI NL+ I + D
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
D S+GF F+++ + EA+ +I+ M+G L +R + V + FK S+ +R R
Sbjct: 130 VACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FK--SRREREAELGAR 186
Query: 254 LLAAQN 259
L N
Sbjct: 187 ALEFTN 192
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 120/264 (45%), Gaps = 55/264 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 55 ASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 114
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 115 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 174
Query: 154 IMNMI---KLYG-----------KPIR-VNKASSHQKNLDVG------------------ 180
+ K YG I+ VN ++K + VG
Sbjct: 175 AQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKAN 234
Query: 181 -ANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N+++ NLD + I D +TG S+GF F+N+ E++ A++
Sbjct: 235 FTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAV 294
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ ++ + + + V A KK +
Sbjct: 295 EELNDKEFKGQKLYVGRAQKKHER 318
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 114/256 (44%), Gaps = 33/256 (12%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV LD KV+ ELF + G + + + D T +G+GF+ F+ E A A++ +
Sbjct: 238 VYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEEL 297
Query: 97 NMIKLYGKPIRVNKAS-SHQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N + G+ + V +A H++ ++ G N+++ NL ++D++ L
Sbjct: 298 NDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLR 357
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNL----------- 188
D F FG I + + I G K S+++N+ A
Sbjct: 358 DLFIGFGNITSARVMRDTIADAGSESEKEKEISNKENVKEEAKKESAEEESSDKSDKAEK 417
Query: 189 -DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRH 247
D + + G SKGF F+ +++ + + ++ M+ + + +P+ V+ A +KD +
Sbjct: 418 SDSKKTLEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR---- 473
Query: 248 GSAAERLLAAQNPLSQ 263
S E + A+N + Q
Sbjct: 474 KSQLEASIQARNTIRQ 489
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 126/280 (45%), Gaps = 58/280 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 50 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 109
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 110 DLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 169
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 170 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 229
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N+++ N+DPE I RD D+G S+GF F+NY E + ++
Sbjct: 230 FTNVYVKNIDPEVTDEEFRELFGKFGDITSATISRD-DSGKSRGFGFVNYVDHENAQTAV 288
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
D ++ + + + V A KK + + R A RL A
Sbjct: 289 DDLNDKDFHGQKLYVGRAQKKHEREEELRRQYEAARLEKA 328
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 110/231 (47%), Gaps = 26/231 (11%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV +D +V++ ELF + G + + + +D ++ +G+GF+ ++ E+A A+ +
Sbjct: 233 VYVKNIDPEVTDEEFRELFGKFGDITSATISRDDSGKS-RGFGFVNYVDHENAQTAVDDL 291
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N +G+ + V +A H++ ++ G N+++ NL +VD++ L
Sbjct: 292 NDKDFHGQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 351
Query: 140 DTFSAFGVILQTPKIMNMIKLYGK----PIRVNKASSHQKNLDVGANIFIGNLDPEIMRD 195
+ FSAFG I + K+M G + ++ + N + D +
Sbjct: 352 ELFSAFGTIT-SAKVMRDTVGAGSDSEKEETKESSEEVEEPKEEETNAKTEDEDKTDAKK 410
Query: 196 PDT---GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
D G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD +
Sbjct: 411 SDKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 461
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 99/201 (49%), Gaps = 41/201 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L+ V+E L++E+F GPV ++ + +D VT+ GY ++ F DA+ A+
Sbjct: 10 ASLYVGDLNPTVTEALLFEIFKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDAERALD 69
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + G+P R+ + G NIFI NLD +D K LYDTFSAFG IL
Sbjct: 70 TLNYTLIKGRPCRIMWSHRDPSIRKSGQGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 129
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+ + GK GNSKG+ F++Y + E
Sbjct: 130 VTD-----GK-----------------------------------GNSKGYGFVHYETSE 149
Query: 214 ASDASIDAMHGQYLCNRPISV 234
A+D++I ++G+ L + + V
Sbjct: 150 AADSAIAKVNGKMLNGKIVYV 170
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 114/278 (41%), Gaps = 69/278 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D + +GYGF+ + E AD A
Sbjct: 96 GQGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVTDGKGNS-KGYGFVHYETSEAADSA 154
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNL-----DVGANIFIGNLDPEVDEKLLYDTFSAFG- 146
I +N L GK + V + + ++ + NI+I NL E+ L F AFG
Sbjct: 155 IAKVNGKMLNGKIVYVGRFIARKERTPGSDPEKFTNIYIKNLGEAYTEEDLKRDFGAFGT 214
Query: 147 ----VILQTPK----------------------IMNMIKLYGKPIRVNKASSHQKNLDV- 179
V+++ P+ +N KL K + V +A +
Sbjct: 215 VQSAVLMKDPRDIGRQFAFVNFEDHEAAHRATEELNGRKLGDKEVYVGRAQKKSERESFL 274
Query: 180 ------------GANIFIGNLDP----------------------EIMRDPDTGNSKGFA 205
G N++I NLD ++M D D GNS+GF
Sbjct: 275 RKLREERAQKYQGINLYIKNLDDTVNDEELHKLFSALPFGQITSCKVMSD-DKGNSRGFG 333
Query: 206 FINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F+ Y + E + ++ M+G+ + N+PI V+ A +KD +
Sbjct: 334 FVCYTNPEDASKAVSEMNGKMVANKPIYVALAERKDVR 371
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 128/280 (45%), Gaps = 60/280 (21%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
SG A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 90 DYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
+ A+ MN L G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG
Sbjct: 66 ERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGN 124
Query: 148 IL--------------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVG 180
IL Q MN + L + + V S ++ ++G
Sbjct: 125 ILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELG 184
Query: 181 A------NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEA 214
A NI++ N L ++MRD ++G+S+ F F+N+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
+ ++ M+G+ + R + YA + + +R R
Sbjct: 244 AQKAVVHMNGKEVSGRLL---YAGRAQKRVERQNELKRRF 280
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 114/284 (40%), Gaps = 69/284 (24%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV L V E + +LF Q G +++V + +D + + +GF+ F E+A A+ M
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHS-RCFGFVNFEKHEEAQKAVVHM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N ++ G+ + R K Q L G N+++ NLD +D+ L
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS +GVI + K+M + G
Sbjct: 312 KEFSPYGVI-TSAKVMT----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK----GDRHGSAAERLL 255
+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + +++ +
Sbjct: 331 HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMR 390
Query: 256 AAQNP-LSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPPS 298
NP L +P F A +P PP G P P+
Sbjct: 391 TLSNPLLGSFQQPSSYFLPA-----MPQPPAQAAYYGCGPVTPT 429
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 52/186 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN L G+PIR+ ++ + VG NIFI NL+ I + D
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
D S+GF F+++ + EA+ +I+ M+G L +R + V + FK S+ +R R
Sbjct: 130 VACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FK--SRREREAELGAR 186
Query: 254 LLAAQN 259
L N
Sbjct: 187 ALEFTN 192
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 124/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG IL
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V S ++ +++GA
Sbjct: 130 VVCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAME 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N L ++MRD +G+S+GF F+N+ E + ++
Sbjct: 190 FTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDV-SGHSRGFGFVNFEKHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
M+G+ + R + V A K+
Sbjct: 249 VNMNGREVSGRLLYVGRAQKR 269
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 132/329 (40%), Gaps = 75/329 (22%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G I++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI MN + L + + V S ++ +++GA NI++ NL +VDE+ L D
Sbjct: 150 AAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQD 209
Query: 141 TFSAFGVILQTPKIMN-----------------------MIKLYGKPI--------RVNK 169
FS FG +L K+M ++ + G+ + R K
Sbjct: 210 LFSQFGKMLSV-KVMRDVSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQK 268
Query: 170 ASSHQKNLDV--------------GANIFIGNLDPEI----MRD--------------PD 197
Q L G N+++ NLD I +R +
Sbjct: 269 RVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE 328
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF-KKDSKGDRHGSAAERLLA 256
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K +++ + A
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAEGRKAILTNQYMQRLSTMRA 388
Query: 257 AQNP-LSQADRPHQLFADAPPPAPLPPPP 284
P L +P F A P PPP
Sbjct: 389 LGGPILGSFQQPASYFLPAVPQVTACPPP 417
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 120/264 (45%), Gaps = 55/264 (20%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
++++YVG LD V+E+ + +LF Q PV N+ + +D +T GY ++ F EDA A+
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAM 116
Query: 94 KIMNMIKLYGKPIRVNKASSH-QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+ +N + +PIR+ ++ L N+FI NLD +D K LY+TFS+FG IL
Sbjct: 117 ESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCK 176
Query: 153 KIMNMI----------------------KLYGKPI------------RVNKASSHQKNLD 178
M+++ KL G + R ++A S +
Sbjct: 177 VAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVP 236
Query: 179 VGANIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASI 219
N+++ NL EI D +GNS+ F F+N+ S EA+ ++
Sbjct: 237 SFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 296
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ M+G L + V A KK +
Sbjct: 297 EKMNGISLGEDVLYVGRAQKKSDR 320
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 140/342 (40%), Gaps = 78/342 (22%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + ++E F G +++ + D V ++ +GYGF++F EE A A
Sbjct: 144 GKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRS-KGYGFVQFEKEETAQAA 202
Query: 93 IKIMNMIKLYGKPI-------RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
I +N + L K + R ++A S + N+++ NL E+ + L TF +
Sbjct: 203 IDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKY 262
Query: 146 G-----VILQ---------------TPKI-------MNMIKLYGKPI----RVNKASSHQ 174
G V+++ +P+ MN I L G+ + R K S +
Sbjct: 263 GDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISL-GEDVLYVGRAQKKSDRE 321
Query: 175 KNLDV--------------GANIFIGNLDPEIMRDP-------------------DTGNS 201
+ L G+N+++ NLD + + G S
Sbjct: 322 EELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS 381
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPL 261
+GF F+ Y++ E + ++ M+G+ + +P+ V+ A +K+ + H + + + +
Sbjct: 382 RGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEER-QAHLQSLFTQIRSPGTM 440
Query: 262 SQADRPHQLFADAPPPAPLPPPPPPI----NIMGLPPPPPSG 299
S P F PP P+ P P+ N GL P P G
Sbjct: 441 SPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMG 482
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 101/210 (48%), Gaps = 41/210 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG LD V+++ +++LF Q G VV+V + +D +Q GYG++ F DA A+
Sbjct: 24 TSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMD 83
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
++N L KPIR+ + G ANIFI NLD +D K LYDTFS FG IL
Sbjct: 84 VLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKI 143
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
M+ +G SKG+ F+ + + E
Sbjct: 144 AMDA----------------------------------------SGLSKGYGFVQFENEE 163
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++ ++ID ++G L ++P+ V + +K +
Sbjct: 164 SAQSAIDKLNGMLLNDKPVYVGHFQRKQDR 193
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 116/283 (40%), Gaps = 71/283 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + +++ F G +++ + D + +GYGF++F EE A A
Sbjct: 110 GAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSA 168
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGAN-----IFIGNLDPEVDEKLLYDTFSAFGV 147
I +N + L KP+ V Q + +N +++ NL V + L +TF +G
Sbjct: 169 IDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGT 228
Query: 148 ILQTPKI---------------------------MNMIKLYGKPIRVNKA-SSHQKNLDV 179
I + +N K K V KA +++ L++
Sbjct: 229 ITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERELEL 288
Query: 180 ----------------GANIFIGNLDP--------------------EIMRDPDTGNSKG 203
GAN+++ NLD +I+RDP G S+G
Sbjct: 289 KERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQ-GISRG 347
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
F+ +++ E + ++ M+G+ + +P+ V+ A KK+ + R
Sbjct: 348 SGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQKKEERKAR 390
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 120/264 (45%), Gaps = 55/264 (20%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
++++YVG LD V+E+ + +LF Q PV N+ + +D +T GY ++ F EDA A+
Sbjct: 44 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAM 102
Query: 94 KIMNMIKLYGKPIRVNKASSH-QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+ +N + +PIR+ ++ L N+FI NLD +D K LY+TFS+FG IL
Sbjct: 103 ESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCK 162
Query: 153 KIMNMI----------------------KLYGKPI------------RVNKASSHQKNLD 178
M+++ KL G + R ++A S +
Sbjct: 163 VAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVP 222
Query: 179 VGANIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASI 219
N+++ NL EI D +GNS+ F F+N+ S EA+ ++
Sbjct: 223 SFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 282
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ M+G L + V A KK +
Sbjct: 283 EKMNGISLGEDVLYVGRAQKKSDR 306
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 140/342 (40%), Gaps = 78/342 (22%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + ++E F G +++ + D V ++ +GYGF++F EE A A
Sbjct: 130 GKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRS-KGYGFVQFEKEETAQAA 188
Query: 93 IKIMNMIKLYGKPI-------RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
I +N + L K + R ++A S + N+++ NL E+ + L TF +
Sbjct: 189 IDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKY 248
Query: 146 G-----VILQ---------------TPKI-------MNMIKLYGKPI----RVNKASSHQ 174
G V+++ +P+ MN I L G+ + R K S +
Sbjct: 249 GDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISL-GEDVLYVGRAQKKSDRE 307
Query: 175 KNLDV--------------GANIFIGNLDPEIMRDP-------------------DTGNS 201
+ L G+N+++ NLD + + G S
Sbjct: 308 EELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS 367
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPL 261
+GF F+ Y++ E + ++ M+G+ + +P+ V+ A +K+ + H + + + +
Sbjct: 368 RGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEER-QAHLQSLFTQIRSPGTM 426
Query: 262 SQADRPHQLFADAPPPAPLPPPPPPI----NIMGLPPPPPSG 299
S P F PP P+ P P+ N GL P P G
Sbjct: 427 SPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMG 468
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 128/280 (45%), Gaps = 60/280 (21%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
SG A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 90 DYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
+ A+ MN L G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG
Sbjct: 66 ERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGN 124
Query: 148 IL--------------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVG 180
IL Q MN + L + + V S ++ ++G
Sbjct: 125 ILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELG 184
Query: 181 A------NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEA 214
A NI++ N L ++MRD ++G+S+ F F+N+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
+ ++ M+G+ + R + YA + + +R R
Sbjct: 244 AQKAVVHMNGKEVSGRLL---YAGRAQKRVERQNELKRRF 280
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 114/284 (40%), Gaps = 69/284 (24%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV L V E + ELF Q G +++V + +D + + +GF+ F E+A A+ M
Sbjct: 193 IYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHS-RCFGFVNFEKHEEAQKAVVHM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N ++ G+ + R K Q L G N+++ NLD +D+ L
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS +GVI + K+M + G
Sbjct: 312 KEFSPYGVIT-SAKVMT----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK----GDRHGSAAERLL 255
+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + +++ +
Sbjct: 331 HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMR 390
Query: 256 AAQNP-LSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPPS 298
NP L +P F A +P PP G P P+
Sbjct: 391 TLSNPLLGSFQQPSSYFLPA-----MPQPPAQAAYYGCGPVTPT 429
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 52/186 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN L G+PIR+ ++ + VG NIFI NL+ I + D
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
D S+GF F+++ + EA+ +I+ M+G L +R + V + FK S+ +R R
Sbjct: 130 VACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FK--SRREREAELGAR 186
Query: 254 LLAAQN 259
L N
Sbjct: 187 ALEFTN 192
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 123/264 (46%), Gaps = 56/264 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + + A+
Sbjct: 42 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALD 101
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 102 ELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 161
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 162 AQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 221
Query: 182 --NIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASI 219
NI+I N+DPE+ RD + G S+GF F+N+++ E++ A++
Sbjct: 222 FTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFGFVNFSTHESAQAAV 280
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ M+ + + ++ + V A KK +
Sbjct: 281 EEMNDKEVRSQKLYVGRAQKKHER 304
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 105/235 (44%), Gaps = 29/235 (12%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IY+ +D +V + +LF + G + + + +D ++ +G+GF+ F E A A++ M
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKS-RGFGFVNFSTHESAQAAVEEM 283
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N ++ + + V +A H++ ++ G N+++ NL +VD+ L
Sbjct: 284 NDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLR 343
Query: 140 DTFSAFGVILQTPKIMNMIKL-YGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
+ F +G I + + + P K S++++N + + +
Sbjct: 344 ELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEEEKE 403
Query: 199 ----------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD +
Sbjct: 404 AEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 458
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 54/243 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG + V+E L++E+F GPV ++ + +D VT+ GY ++ F DA+ A+
Sbjct: 76 ASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNLVDAERALD 135
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G P R+ ++ + VG NIF+ NLDP +D K LYDTFS FG IL
Sbjct: 136 TMNFTCIKGVPCRIMWSQRDPSLRKSGVG-NIFVKNLDPSIDNKALYDTFSLFGNILSCK 194
Query: 153 ----------------------------KIMNMIKLYGKPIRVNKASSHQKNLDV--GAN 182
KI M+ + G + V Q+ D+ N
Sbjct: 195 VANDPTGQSKGYGYVHYETAEAATEAINKINGML-IAGTEVFVGHFQKRQERPDIEDWTN 253
Query: 183 IFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASIDAM 222
++ NL + +M+DP++ ++GF F+NY + + A+++ +
Sbjct: 254 CYVKNLPTQWTDADLRREFEPFGQVNSAVVMKDPNSATNRGFGFVNYEDADGAHAAVEGL 313
Query: 223 HGQ 225
G+
Sbjct: 314 SGK 316
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/283 (20%), Positives = 112/283 (39%), Gaps = 74/283 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I+V LD + +++ F G +++ + D Q+ +GYG++ + E A A
Sbjct: 162 GVGNIFVKNLDPSIDNKALYDTFSLFGNILSCKVANDPTGQS-KGYGYVHYETAEAATEA 220
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDV--GANIFIGNLDPEVDEKLLYDTFSAFG---- 146
I +N + + G + V Q+ D+ N ++ NL + + L F FG
Sbjct: 221 INKINGMLIAGTEVFVGHFQKRQERPDIEDWTNCYVKNLPTQWTDADLRREFEPFGQVNS 280
Query: 147 -VILQTP-------------------------------KIMNMIKLYGKPIRVNKASSHQ 174
V+++ P K +N + L + K + +
Sbjct: 281 AVVMKDPNSATNRGFGFVNYEDADGAHAAVEGLSGKTFKGVNGVDLELYVGKAQKRTERE 340
Query: 175 KNLD--------------VGANIFIGNLD--------------------PEIMRDPDTGN 200
+ L G N+++ NLD +MRD TGN
Sbjct: 341 RELRQKFDQLKLERINKYQGVNLYVKNLDDLLQDEELREAFTNYGTITSARVMRD-STGN 399
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
S+GF F+ +++ E + ++ M+G+ + +P+ V++A +K+ +
Sbjct: 400 SRGFGFVCFSTPEEAATAVAEMNGKLITGKPVYVAFAQRKEVR 442
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 128/280 (45%), Gaps = 60/280 (21%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
SG A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 90 DYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
+ A+ MN L G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG
Sbjct: 66 ERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGN 124
Query: 148 IL--------------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVG 180
IL Q MN + L + + V S ++ ++G
Sbjct: 125 ILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELG 184
Query: 181 A------NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEA 214
A NI++ N L ++MRD ++G+S+ F F+N+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
+ ++ M+G+ + R + YA + + +R R
Sbjct: 244 AQKAVVHMNGKEVSGRLL---YAGRAQKRVERQNELKRRF 280
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 114/284 (40%), Gaps = 69/284 (24%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV L V E + +LF Q G +++V + +D + + +GF+ F E+A A+ M
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHS-RCFGFVNFEKHEEAQKAVVHM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N ++ G+ + R K Q L G N+++ NLD +D+ L
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS +GVI + K+M + G
Sbjct: 312 KEFSPYGVIT-SAKVMT----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK----GDRHGSAAERLL 255
+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + +++ +
Sbjct: 331 HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMR 390
Query: 256 AAQNP-LSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPPS 298
NP L +P F A +P PP G P P+
Sbjct: 391 TLSNPLLGSFQQPSSYFLPA-----MPQPPAQAAYYGCGPVTPT 429
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 52/186 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN L G+PIR+ ++ + VG NIFI NL+ I + D
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
D S+GF F+++ + EA+ +I+ M+G L +R + V + FK S+ +R R
Sbjct: 130 VACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FK--SRREREAELGAR 186
Query: 254 LLAAQN 259
L N
Sbjct: 187 ALEFTN 192
>gi|297739370|emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 124/271 (45%), Gaps = 56/271 (20%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
+G +A++YVG LD + E +++LF Q PV+++ + +D+ + GY ++ F +DA
Sbjct: 8 AGFANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDA 67
Query: 90 DYAIKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVI 148
A++ +N L GKPIR+ + G AN+FI NLDP +D K L DTF+AFG +
Sbjct: 68 TNALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTV 127
Query: 149 LQTP---------------------------KIMNMIKLYGKPIRVNKASSHQ-KNLDVG 180
L K +N + + K + V HQ +N G
Sbjct: 128 LSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNG 187
Query: 181 A----NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASD 216
+ N+++ NL +MRD +G SK F F+N+ S +++
Sbjct: 188 SPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDA-SGMSKCFGFVNFQSSDSAA 246
Query: 217 ASIDAMHGQYLCNRPISVSYAFKKDSKGDRH 247
A+++ ++G + V Y K K +R
Sbjct: 247 AAVEHLNGATFNDD--KVWYVGKAQRKSERE 275
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 48/176 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI--------------------------- 154
A++++G+LD + E LYD F +L
Sbjct: 13 ASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALE 72
Query: 155 -MNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEIMRDP---------------- 196
+N L GKPIR+ + G AN+FI NLDP I
Sbjct: 73 HLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSCKI 132
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
+ G SKG+ F+ + EA+ +I ++G + ++ + V + + +GS
Sbjct: 133 ALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGS 188
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ LDD V++ + ELF + G + + + D +G GF+ F+ E+A A+ +M
Sbjct: 298 LYLKNLDDSVNDEKLKELFSEFGTITSCKVMLD-PQGLSKGSGFVAFLTPEEATRALNVM 356
Query: 97 NMIKLYGKPIRVNKASSHQK 116
N + KP+ V A ++
Sbjct: 357 NGKMIGRKPLYVAVAQRKEE 376
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 120/264 (45%), Gaps = 55/264 (20%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
++++YVG LD V+E+ + +LF Q PV N+ + +D +T GY ++ F EDA A+
Sbjct: 44 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAM 102
Query: 94 KIMNMIKLYGKPIRVNKASSH-QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+ +N + +PIR+ ++ L N+FI NLD +D K LY+TFS+FG IL
Sbjct: 103 ESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCK 162
Query: 153 KIMNMI----------------------KLYGKPI------------RVNKASSHQKNLD 178
M+++ KL G + R ++A S +
Sbjct: 163 VAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVP 222
Query: 179 VGANIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASI 219
N+++ NL EI D +GNS+ F F+N+ S EA+ ++
Sbjct: 223 SFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 282
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ M+G L + V A KK +
Sbjct: 283 EKMNGISLGEDVLYVGRAQKKSDR 306
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 140/342 (40%), Gaps = 78/342 (22%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + ++E F G +++ + D V ++ +GYGF++F EE A A
Sbjct: 130 GKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRS-KGYGFVQFEKEETAQAA 188
Query: 93 IKIMNMIKLYGKPI-------RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
I +N + L K + R ++A S + N+++ NL E+ + L TF +
Sbjct: 189 IDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKY 248
Query: 146 G-----VILQ---------------TPKI-------MNMIKLYGKPI----RVNKASSHQ 174
G V+++ +P+ MN I L G+ + R K S +
Sbjct: 249 GDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISL-GEDVLYVGRAQKKSDRE 307
Query: 175 KNLDV--------------GANIFIGNLDPEIMRDP-------------------DTGNS 201
+ L G+N+++ NLD + + G S
Sbjct: 308 EELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS 367
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPL 261
+GF F+ Y++ E + ++ M+G+ + +P+ V+ A +K+ + H + + + +
Sbjct: 368 RGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEER-QAHLQSLFTQIRSPGTM 426
Query: 262 SQADRPHQLFADAPPPAPLPPPPPPI----NIMGLPPPPPSG 299
S P F PP P+ P P+ N GL P P G
Sbjct: 427 SPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMG 468
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 41/210 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG L+ V+++ ++ELF Q+G VV+V + +D ++ GY ++ + DA A++
Sbjct: 122 TSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAME 181
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N L KPIRV ++ + G ANIFI NLD +D K L+DTFSAFG IL
Sbjct: 182 ALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKV 241
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
M+ D G SKGF F+ Y E
Sbjct: 242 AMD----------------------------------------DIGQSKGFGFVQYEKEE 261
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++ +++ +++G + ++P+ V +K +
Sbjct: 262 SAQSAMKSLNGMLINDKPVYVGPFLRKQER 291
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/324 (22%), Positives = 131/324 (40%), Gaps = 82/324 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + + + F G +++ + D + Q+ +G+GF+++ EE A A
Sbjct: 208 GSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQS-KGFGFVQYEKEESAQSA 266
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG-----ANIFIGNLDPEVDEKLLYDTFSAFGV 147
+K +N + + KP+ V Q+ + N+F+ NL ++ L FS +G
Sbjct: 267 MKSLNGMLINDKPVYVGPFLRKQERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGT 326
Query: 148 ILQTPKIMNM----------------------IKLYGKPI--------RVNKASSHQKNL 177
I ++ M +L GK I R K S + +L
Sbjct: 327 ITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDL 386
Query: 178 DV--------------GANIFIGNLDP--------------------EIMRDPDTGNSKG 203
G N+++ NLD +IMRD + G SKG
Sbjct: 387 KRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQN-GVSKG 445
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F+++++ E + ++ M+G+ + +P+ V++A +K+ ER Q SQ
Sbjct: 446 SGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRKE----------ERKAMLQAQFSQ 495
Query: 264 ADRPHQLFADAPPPAPLPPPPPPI 287
RP + P P+ PP P +
Sbjct: 496 M-RPVPMTPSMTPRLPMYPPMPTL 518
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 128/280 (45%), Gaps = 60/280 (21%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
SG A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 90 DYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
+ A+ MN L G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG
Sbjct: 66 ERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGN 124
Query: 148 IL--------------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVG 180
IL Q MN + L + + V S ++ ++G
Sbjct: 125 ILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELG 184
Query: 181 A------NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEA 214
A NI++ N L ++MRD ++G+S+ F F+N+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
+ ++ M+G+ + R + YA + + +R R
Sbjct: 244 AQKAVVHMNGKEVSGRLL---YAGRAQKRVERQNELKRRF 280
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 114/284 (40%), Gaps = 69/284 (24%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV L V E + +LF Q G +++V + +D + + +GF+ F E+A A+ M
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHS-RCFGFVNFEKHEEAQKAVVHM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N ++ G+ + R K Q L G N+++ NLD +D+ L
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS +GVI + K+M + G
Sbjct: 312 KEFSPYGVIT-SAKVMT----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK----GDRHGSAAERLL 255
+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + +++ +
Sbjct: 331 HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMR 390
Query: 256 AAQNP-LSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPPS 298
NP L +P F A +P PP G P P+
Sbjct: 391 TLSNPLLGSFQQPSSYFLPA-----MPQPPAQAAYYGCGPVTPT 429
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 52/186 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN L G+PIR+ ++ + VG NIFI NL+ I + D
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
D S+GF F+++ + EA+ +I+ M+G L +R + V + FK S+ +R R
Sbjct: 130 VACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FK--SRREREAELGAR 186
Query: 254 LLAAQN 259
L N
Sbjct: 187 ALEFTN 192
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 123/264 (46%), Gaps = 56/264 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + + A+
Sbjct: 42 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALD 101
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 102 ELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 161
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 162 AQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 221
Query: 182 --NIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASI 219
NI+I N+DPE+ RD + G S+GF F+N+++ E++ A++
Sbjct: 222 FTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFGFVNFSTHESAQAAV 280
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ M+ + + ++ + V A KK +
Sbjct: 281 EEMNDKEVRSQKLYVGRAQKKHER 304
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 105/235 (44%), Gaps = 29/235 (12%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IY+ +D +V + +LF + G + + + +D ++ +G+GF+ F E A A++ M
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKS-RGFGFVNFSTHESAQAAVEEM 283
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N ++ + + V +A H++ ++ G N+++ NL +VD+ L
Sbjct: 284 NDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLR 343
Query: 140 DTFSAFGVILQTPKIMNMIKL-YGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
+ F +G I + + + P K S++++N + + +
Sbjct: 344 ELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEEKKE 403
Query: 199 ----------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD +
Sbjct: 404 AEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 458
>gi|426200105|gb|EKV50029.1| hypothetical protein AGABI2DRAFT_190442 [Agaricus bisporus var.
bisporus H97]
Length = 673
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 117/265 (44%), Gaps = 54/265 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ D + A++
Sbjct: 42 ASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 101
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + + R+ + G N+FI NLD +D K L+DTF AFG +L
Sbjct: 102 QLNYSLIKNRACRIMWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDTFVAFGNVLSCKV 161
Query: 153 --------------------------KIMNMIKLYGKPIRVNKASS---HQKNLDVG--- 180
K +N + L K + V S Q LD
Sbjct: 162 ATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRKERQSKLDEMKAQ 221
Query: 181 -ANIFIGNLDPEIMRDPDT-------------------GNSKGFAFINYASFEASDASID 220
N++I NLD E+ ++ T G SKGF F+NY E + ++D
Sbjct: 222 FTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAVD 281
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGD 245
+H L + + V+ A KK + D
Sbjct: 282 ELHDTDLKGKKLFVARAQKKAERED 306
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 58/224 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ LD +V++ ELF + G V + + D ++ +G+GF+ + E+A A+ +
Sbjct: 225 LYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKS-KGFGFVNYERHEEAQRAVDEL 283
Query: 97 NMIKLYGKPIRVNKASSHQKNLD-----------------VGANIFIGNLDPEVDEKLLY 139
+ L GK + V +A + D G N++I NL+ + D+ L
Sbjct: 284 HDTDLKGKKLFVARAQKKAEREDELRRSYEQAKLEKLSKYQGVNLYIKNLEDDFDDDKLR 343
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
F FG I ++MRD + G
Sbjct: 344 AEFEPFGAITSC---------------------------------------KVMRD-EKG 363
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S + + ++ M+ + + +P+ VS A +++ +
Sbjct: 364 TSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVR 407
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 103/219 (47%), Gaps = 44/219 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD VSE L++++F GPV ++ + +D +T+T GY ++ F E AI+
Sbjct: 50 ASLYVGELDPSVSEALLYDIFSPIGPVTSIRVCRDAITKTSLGYAYVNFNDHESGRTAIE 109
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + GKP R+ + GA NIFI NL P++D K L+DTFS FG IL
Sbjct: 110 KLNYSPIKGKPCRIMWSQRDPALRKKGAGNIFIKNLHPDIDNKALHDTFSVFGNILSC-- 167
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+I D +TG SKGF F+++
Sbjct: 168 -------------------------------------KIATD-ETGKSKGFGFVHFEEDN 189
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
A+ ++DA++G L R + Y + SK DR E
Sbjct: 190 AAVEAVDAINGMMLNGREV---YVAQHVSKKDRESKLEE 225
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 65/258 (25%)
Query: 4 GREIQAGISTPCLQSLSQTKLEGGGESGDGDAT-IYVGGLDDKVSETLMWELFVQSGPVV 62
GRE+ Q +S+ E E + T +YV +D E LF + GP+
Sbjct: 205 GREVYVA------QHVSKKDRESKLEEVKANFTNVYVKNVDVDTPEDEFTALFSKYGPIT 258
Query: 63 NVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLD--- 119
++ M KD + +G+GFI F +DA A++ +N ++ G+ + V +A + L
Sbjct: 259 SIAMEKDSEGK-FRGFGFINFENHDDAAKAVEELNDLEFKGQKLYVGRAQKKYERLQELK 317
Query: 120 --------------VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPI 165
G N+F+ NLD +D++ L F+ FG I
Sbjct: 318 KQYEASRLEKLAKYQGVNLFVKNLDDSIDDEKLEAEFAPFGSITSA-------------- 363
Query: 166 RVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQ 225
++MR+ + G SK F F+ +++ E + +I + Q
Sbjct: 364 -------------------------KVMRN-EEGKSKNFGFVCFSTPEEATKAITEKNQQ 397
Query: 226 YLCNRPISVSYAFKKDSK 243
+ +P+ V+ A +KD +
Sbjct: 398 IVAGKPLYVAIAQRKDVR 415
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D ++ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+P+R+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFEVIKGRPVRIMWSQRDPGLRKSGVG-NVFIKNLDDSIDNKALYDTFSAFGNILSCK 129
Query: 153 --------------------------KIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V S ++ + GA
Sbjct: 130 VVCDENGSRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAME 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D TG SKGF F+N+ E + ++
Sbjct: 190 FTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
M+G+ + R + V A K+
Sbjct: 249 ADMNGKEINGRMVYVGRAQKR 269
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 118/285 (41%), Gaps = 71/285 (24%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G +++ LDD + +++ F G +++ + D +G+GF+ F +E
Sbjct: 92 GLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI+ MN + L + + V S ++ + GA N++I N ++D+ L +
Sbjct: 150 AATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLRE 209
Query: 141 TFSAFGVILQTPKIMN----------------------MIKLYGKPI------------R 166
FS FG L +M+ + + GK I R
Sbjct: 210 IFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKR 269
Query: 167 VNKASSHQKNLDV----------GANIFIGNLDP----EIMRD--------------PDT 198
+ + S ++ + G N+++ NLD E +R +
Sbjct: 270 LERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEG 329
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 43/220 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKNIDNKAMYDTFSAFGNILSC- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D ++G SKG+ F+++ +
Sbjct: 129 --------------------------------------KVAQD-ESGASKGYGFVHFETE 149
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
EA++ SID ++G L + + V + + G A+
Sbjct: 150 EAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAK 189
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 118/282 (41%), Gaps = 73/282 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + M++ F G +++ + +D + +GYGF+ F EE A+ +
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDE-SGASKGYGFVHFETEEAANKS 155
Query: 93 IKIMNMIKLYGKPIRVNK---ASSHQKNLDVGA----NIFIGNLDPEVDEKLLYDTFSAF 145
I +N + L GK + V K +K L A N+++ N ++ + L + F +
Sbjct: 156 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKY 215
Query: 146 GVILQTPKIMN-----------------------MIKLYGKPI---------RVNKASSH 173
G I + K+M+ +++L GK I R K +
Sbjct: 216 GTIT-SHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKDISEGKCMYVGRAQKKAER 274
Query: 174 QKNLDV--------------GANIFIGNLDPEI----MRDPDT--------------GNS 201
Q+ L G N+++ NLD I +R T G S
Sbjct: 275 QQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMMEEGRS 334
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
KGF F+ ++ E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 KGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDR 376
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 41/210 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG LD V+++ +++LF Q G VV+V + +D T GYG++ + ++DA AI
Sbjct: 40 TSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAID 99
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
++N L K IRV+ + + GA NIFI NLD +D K L++TFS+FG I+
Sbjct: 100 VLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISC-- 157
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+I D +G SKG+ F+ Y S E
Sbjct: 158 -------------------------------------KIATDA-SGQSKGYGFVQYDSEE 179
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
A+ +ID ++G + ++ + V +K +
Sbjct: 180 AAQTAIDKLNGMLMNDKQVYVGVFLRKQDR 209
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 113/274 (41%), Gaps = 69/274 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV L D SE + + F + G + +V + +D ++ + +GF+ F EDA A+ +
Sbjct: 221 IYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKS-KCFGFVNFENPEDAAKAVDAL 279
Query: 97 NMIKLYGKPIRVNKASSH-QKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N K K V KA ++ +++ G N+++ NLD +D++ L
Sbjct: 280 NGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLK 339
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ FS +G I ++MRDP +G
Sbjct: 340 ELFSEYGTITSC---------------------------------------KVMRDP-SG 359
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
S+G F+ +++ E + ++ M+G+ + ++P+ V+ A +K+ + R + ++
Sbjct: 360 ISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAM 419
Query: 260 PLSQADR-----------PHQLFADAPPPAPLPP 282
P S R QLF PPA + P
Sbjct: 420 PPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAP 453
>gi|409082274|gb|EKM82632.1| hypothetical protein AGABI1DRAFT_111221 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 671
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 117/265 (44%), Gaps = 54/265 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ D + A++
Sbjct: 42 ASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 101
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + + R+ + G N+FI NLD +D K L+DTF AFG +L
Sbjct: 102 QLNYSLIKNRACRIMWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDTFVAFGNVLSCKV 161
Query: 153 --------------------------KIMNMIKLYGKPIRVNKASS---HQKNLDVG--- 180
K +N + L K + V S Q LD
Sbjct: 162 ATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRKERQSKLDEMKAQ 221
Query: 181 -ANIFIGNLDPEIMRDPDT-------------------GNSKGFAFINYASFEASDASID 220
N++I NLD E+ ++ T G SKGF F+NY E + ++D
Sbjct: 222 FTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAVD 281
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGD 245
+H L + + V+ A KK + D
Sbjct: 282 ELHDTDLKGKKLFVARAQKKAERED 306
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 58/224 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ LD +V++ ELF + G V + + D ++ +G+GF+ + E+A A+ +
Sbjct: 225 LYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKS-KGFGFVNYERHEEAQRAVDEL 283
Query: 97 NMIKLYGKPIRVNKASSHQKNLD-----------------VGANIFIGNLDPEVDEKLLY 139
+ L GK + V +A + D G N++I NL+ + D+ L
Sbjct: 284 HDTDLKGKKLFVARAQKKAEREDELRRSYEQAKLEKLSKYQGINLYIKNLEDDFDDDKLR 343
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
F FG I ++MRD + G
Sbjct: 344 AEFEPFGAITSC---------------------------------------KVMRD-EKG 363
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S + + ++ M+ + + +P+ VS A +++ +
Sbjct: 364 TSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVR 407
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 126/268 (47%), Gaps = 60/268 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY + F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG N+FI NL+ +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRRSGVG-NVFIKNLNKTIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVG----- 180
+ MN + L + + V + S ++ ++G
Sbjct: 130 VVCDENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKE 189
Query: 181 -ANIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D + G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTD-EGGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGDRH 247
D M+G+ L + I V A KK DRH
Sbjct: 249 DEMNGKELNGKHIYVGPAQKKV---DRH 273
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 97/227 (42%), Gaps = 65/227 (28%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D++ + + LF + G V++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPIRVNKASSHQKNLDV--------------------GANIFIGNLDPEVDEK 136
N +L GK I V A QK +D G N+++ NLD +D++
Sbjct: 252 NGKELNGKHIYVGPA---QKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDE 308
Query: 137 LLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196
L FS FG I T K+M
Sbjct: 309 RLQKEFSPFGTITST-KVMT---------------------------------------- 327
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEER 374
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 128/280 (45%), Gaps = 60/280 (21%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
SG A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 90 DYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
+ A+ MN L G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG
Sbjct: 66 ERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGN 124
Query: 148 IL--------------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVG 180
IL Q MN + L + + V S ++ ++G
Sbjct: 125 ILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELG 184
Query: 181 A------NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEA 214
A NI++ N L ++MRD ++G+S+ F F+N+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
+ ++ M+G+ + R + YA + + +R R
Sbjct: 244 AQKAVVHMNGKEVSGRLL---YAGRAQKRVERQNELKRRF 280
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 136/346 (39%), Gaps = 83/346 (23%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G I++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI MN + L + + V S ++ ++GA NI++ NL +VDE+ L D
Sbjct: 150 AAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQD 209
Query: 141 TFSAFGVILQTPKIMN-----------------------MIKLYGKPI--------RVNK 169
FS FG +L K+M ++ + GK + R K
Sbjct: 210 LFSQFGKMLSV-KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 170 ASSHQKNLDV--------------GANIFIGNLDPEIMRD------------------PD 197
Q L G N+++ NLD I D +
Sbjct: 269 RVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE 328
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK----GDRHGSAAER 253
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + +++
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLST 388
Query: 254 LLAAQNP-LSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPPS 298
+ NP L +P F A +P PP G P P+
Sbjct: 389 MRTLSNPLLGSFQQPSSYFLPA-----VPQPPAQAAYYGCGPVTPT 429
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 52/186 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN L G+PIR+ ++ + VG NIFI NL+ I + D
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
D S+GF F+++ + EA+ +I+ M+G L +R + V + FK S+ +R R
Sbjct: 130 VACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FK--SRREREAELGAR 186
Query: 254 LLAAQN 259
L N
Sbjct: 187 ALEFTN 192
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 127/280 (45%), Gaps = 58/280 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALE 120
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 121 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 180
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 181 AQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 240
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
NI+I N+ E + RD + G S+GF F+N+ + E++ ++
Sbjct: 241 FTNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQE-GKSRGFGFVNFTTHESAAKAV 299
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
+ +HG+ + + V A KK + + R A RL A
Sbjct: 300 EELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKA 339
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 68/137 (49%), Gaps = 19/137 (13%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
IY+ + + S+ ELF + G + + + +D+ ++ +G+GF+ F E A A++
Sbjct: 243 NIYIKNISTEASDDEFRELFEKYGDITSSSLARDQEGKS-RGFGFVNFTTHESAAKAVEE 301
Query: 96 MNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLL 138
++ G+ + V +A H++ ++ G N++I NLD +VD++ L
Sbjct: 302 LHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKL 361
Query: 139 YDTFSAFGVILQTPKIM 155
F+ FG I + K+M
Sbjct: 362 RQMFAEFGPIT-SAKVM 377
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 123/264 (46%), Gaps = 56/264 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + + A+
Sbjct: 42 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALD 101
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 102 ELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 161
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 162 AQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 221
Query: 182 --NIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASI 219
NI+I N+DPE+ RD + G S+GF F+N+++ E++ A++
Sbjct: 222 FTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFGFVNFSTHESAQAAV 280
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ M+ + + ++ + V A KK +
Sbjct: 281 EEMNDKEVRSQKLYVGRAQKKHER 304
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 105/235 (44%), Gaps = 29/235 (12%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IY+ +D +V + +LF + G + + + +D ++ +G+GF+ F E A A++ M
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKS-RGFGFVNFSTHESAQAAVEEM 283
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N ++ + + V +A H++ ++ G N+++ NL +VD+ L
Sbjct: 284 NDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLR 343
Query: 140 DTFSAFGVILQTPKIMNMIKL-YGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
+ F +G I + + + P K S++++N + + +
Sbjct: 344 ELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEEKKE 403
Query: 199 ----------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD +
Sbjct: 404 AEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 458
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 119/264 (45%), Gaps = 54/264 (20%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G ++YVG LD V+++ +++ F Q G VV+V + +D T+ GYG++ F +DA A
Sbjct: 38 GTTSLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARA 97
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
I+ +N I L GKP+RV + GA NIFI NLD +D K L+DTFS FG I+
Sbjct: 98 IQELNYIPLNGKPVRVMYSHRDPSVRRSGAGNIFIKNLDKSIDHKALHDTFSVFGNIISC 157
Query: 152 P--------------------------------KIMNMIKLYGKPIRVNKASSHQKNLDV 179
++N ++Y P + N +
Sbjct: 158 KVAVDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQVYVGPFLRRQERDSTGNKTI 217
Query: 180 GANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N+++ NL +M+D + G KGF F+N+ + + + ++
Sbjct: 218 FTNVYVKNLAESTTDDDLKNIFGEFGKITSAVVMKDGE-GKPKGFGFVNFENADDAAKAV 276
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
++++G+ ++ V A KK +
Sbjct: 277 ESLNGKTFDDKEWFVGRAQKKSER 300
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 111/283 (39%), Gaps = 71/283 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + + F G +++ + D Q+ +GYGF+++ EE A A
Sbjct: 126 GAGNIFIKNLDKSIDHKALHDTFSVFGNIISCKVAVDSSGQS-KGYGFVQYETEESAQKA 184
Query: 93 IKIMNMIKLYGKPIRVNKASSHQK-----NLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
+ +N + L K + V Q+ N + N+++ NL + L + F FG
Sbjct: 185 MGQLNGMLLNDKQVYVGPFLRRQERDSTGNKTIFTNVYVKNLAESTTDDDLKNIFGEFGK 244
Query: 148 ILQT---------PKIMNMI-------------KLYGKPI--------RVNKASSHQKNL 177
I PK + L GK R K S + L
Sbjct: 245 ITSAVVMKDGEGKPKGFGFVNFENADDAAKAVESLNGKTFDDKEWFVGRAQKKSEREMEL 304
Query: 178 DV--------------GANIFIGNLDP--------------------EIMRDPDTGNSKG 203
V +N+++ NLD ++MRDP+ G S+G
Sbjct: 305 KVQYEQSLKEAADKFQSSNLYVKNLDDSVSDEKLKELFTPYGTVTSCKVMRDPN-GMSRG 363
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
F+ +++ E + ++ M G+ + N+P+ V+ A +K+ + R
Sbjct: 364 SGFVAFSTPEEATKAMSEMSGKMIENKPLYVAVAQRKEDRRAR 406
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 51/176 (28%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL----------------------------QTPK 153
++++G+LDP V + L+D FS G ++ + +
Sbjct: 40 TSLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARAIQ 99
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEI----MRDP------------ 196
+N I L GKP+RV + GA NIFI NLD I + D
Sbjct: 100 ELNYIPLNGKPVRVMYSHRDPSVRRSGAGNIFIKNLDKSIDHKALHDTFSVFGNIISCKV 159
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK---KDSKGDR 246
+G SKG+ F+ Y + E++ ++ ++G L ++ + V + +DS G++
Sbjct: 160 AVDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQVYVGPFLRRQERDSTGNK 215
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 122/264 (46%), Gaps = 55/264 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 54 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 113
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 114 DLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 173
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + + K K ++ A
Sbjct: 174 AQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKAN 233
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N+++ N+D + + RD ++G S+GF F+N+ S E++ A++
Sbjct: 234 FTNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTSHESAAAAV 293
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
D ++ + ++ + V A KK +
Sbjct: 294 DNLNEKDFKSQKLYVGRAQKKHER 317
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 102/247 (41%), Gaps = 50/247 (20%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV +D ++ ELF + G + + + +D + +G+GF+ F E A A+ +
Sbjct: 237 VYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTSHESAAAAVDNL 296
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N + + V +A H++ ++ G N++I NL ++D++ L
Sbjct: 297 NEKDFKSQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 356
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRD---- 195
D FS +G I + + + +A S K N PE +D
Sbjct: 357 DLFSGYGTITSAKVMRDNLAAESSSDSEKEAKSEGKE----------NEPPEESKDEAAE 406
Query: 196 ----PDT---------------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSY 236
DT G SKGF F+ ++S + + ++ M+ + + +P+ V+
Sbjct: 407 KAETKDTKEAKTESKKADKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVAL 466
Query: 237 AFKKDSK 243
A +KD +
Sbjct: 467 AQRKDVR 473
>gi|403417917|emb|CCM04617.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 117/263 (44%), Gaps = 54/263 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ D + A++
Sbjct: 44 ASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 103
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + G+ R+ + G NIFI NLD ++D K L+DTF+AFG +L
Sbjct: 104 QLNYSSIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKV 163
Query: 153 --------------------------KIMNMIKLYGKPI-------RVNKASSHQKNLDV 179
K +N + L K + R + S ++
Sbjct: 164 ATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLEEMKAQ 223
Query: 180 GANIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
NI++ N DPE+ + D G S+GF F+N+ + + +++
Sbjct: 224 FTNIYVKNFDPEVTEEEFMALFQQFGSVTSAVIQRDDEGRSRGFGFVNFEVHDEAQKAVE 283
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
+H + + VS A KK +
Sbjct: 284 GLHDLDFKGKKLFVSRAQKKAER 306
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 117/282 (41%), Gaps = 73/282 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD+++ + + F G V++ + D ++ +GYGF+ + E A+ A
Sbjct: 130 GQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRS-KGYGFVHYETAEAAETA 188
Query: 93 IKIMNMIKLYGKPI-------RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
IK +N + L K + R + S ++ NI++ N DPEV E+ F F
Sbjct: 189 IKAVNGMLLNDKKVYVGYHISRKERQSKLEEMKAQFTNIYVKNFDPEVTEEEFMALFQQF 248
Query: 146 GVIL---------------------------QTPKIMNMIKLYGKPIRVNKA-------- 170
G + + + ++ + GK + V++A
Sbjct: 249 GSVTSAVIQRDDEGRSRGFGFVNFEVHDEAQKAVEGLHDLDFKGKKLFVSRAQKKAEREQ 308
Query: 171 ----SSHQKNLD-----VGANIFIGNLD--------------------PEIMRDPDTGNS 201
S Q ++ G N++I NL+ ++MRD + G S
Sbjct: 309 ELRQSYEQAKMEKMSKFQGVNLYIKNLEDDLDDDRLRTEFEPFGSITSAKVMRD-EKGTS 367
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
KGF F+ ++S + + ++ M+ + + +P+ VS A ++D +
Sbjct: 368 KGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRRDVR 409
>gi|403416100|emb|CCM02800.1| predicted protein [Fibroporia radiculosa]
Length = 433
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 45/215 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG--YGFIEFMGEEDADYA 92
A +YVG L +V+E ++ E+F +GPV +V + DR Q H G YGF+E+M A+ A
Sbjct: 16 AHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQ-HGGLNYGFVEYMDMRAAETA 74
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGAN---IFIGNLDPEVDEKLLYDTFSAFGVIL 149
++ +N K++ IRVN A Q+N + +N +F+G+L PEV++++L FSAFG +
Sbjct: 75 LQTLNGRKIFDTEIRVNWAYQGQQNKEDTSNHYHVFVGDLSPEVNDEVLGKAFSAFGTL- 133
Query: 150 QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINY 209
D +M D ++G S+G+ F+ +
Sbjct: 134 --------------------------------------SDARVMWDMNSGKSRGYGFLAF 155
Query: 210 ASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
++ +I M+G++L +R I V++A +K G
Sbjct: 156 RDKTDAEQAIATMNGEWLGSRAIRVNWANQKTQGG 190
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 128/280 (45%), Gaps = 60/280 (21%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
SG A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 90 DYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
+ A+ MN L G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG
Sbjct: 66 ERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGN 124
Query: 148 IL--------------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVG 180
IL Q MN + L + + V S ++ ++G
Sbjct: 125 ILSCKVVCDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELG 184
Query: 181 A------NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEA 214
A NI++ N L ++MRD ++G+S+ F F+N+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
+ ++ M+G+ + R + YA + + +R R
Sbjct: 244 AQKAVVHMNGKEVSGRLL---YAGRAQKRVERQNELKRRF 280
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 136/346 (39%), Gaps = 83/346 (23%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G I++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI MN + L + + V S ++ ++GA NI++ NL +VDE+ L D
Sbjct: 150 AAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQD 209
Query: 141 TFSAFGVILQTPKIMN-----------------------MIKLYGKPI--------RVNK 169
FS FG +L K+M ++ + GK + R K
Sbjct: 210 LFSQFGKMLSV-KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 170 ASSHQKNLDV--------------GANIFIGNLDPEIMRD------------------PD 197
Q L G N+++ NLD I D +
Sbjct: 269 RVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE 328
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK----GDRHGSAAER 253
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + +++
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLST 388
Query: 254 LLAAQNP-LSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPPS 298
+ NP L +P F A +P PP G P P+
Sbjct: 389 MRTLSNPLLGSFQQPSSYFLPA-----VPQPPAQAAYYGCGPVTPT 429
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 52/186 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN L G+PIR+ ++ + VG NIFI NL+ I + D
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
D S+GF F+++ + EA+ +I+ M+G L +R + V + FK S+ +R R
Sbjct: 130 VVCDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FK--SRREREAELGAR 186
Query: 254 LLAAQN 259
L N
Sbjct: 187 ALEFTN 192
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 109/224 (48%), Gaps = 48/224 (21%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D A++YVG L+ V+E L++E+F G V ++ + +D VT+ GY ++ F ED +
Sbjct: 47 DTSASLYVGELNPSVNEALLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEK 106
Query: 92 AIKIMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
AI+ +N + G+P R+ + S ++N + NIFI NL P +D K L+DTFSAFG I
Sbjct: 107 AIEELNYSLIDGRPCRIMWSQRDPSLRRNGE--GNIFIKNLHPAIDNKALHDTFSAFGKI 164
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFIN 208
L ++ D + GNSK F F++
Sbjct: 165 LSC---------------------------------------KVATD-EQGNSKCFGFVH 184
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
Y + EA+ A+I+ ++G L +R + Y K SK DR E
Sbjct: 185 YETAEAAKAAIENVNGMLLNDREV---YVGKHVSKKDRESKFEE 225
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 116/297 (39%), Gaps = 73/297 (24%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+YV +D SE M +LF G + ++H+ KD ++ +G+GF+ F E A A++
Sbjct: 231 TNVYVKNIDLGFSEEEMRKLFEPYGKITSLHLEKDAEGKS-KGFGFVNFESHEAAVKAVE 289
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLD-----------------VGANIFIGNLDPEVDEKL 137
+N + G+ + V +A ++ ++ G N+F+ NLD +D
Sbjct: 290 ELNDKDINGQKLYVGRAQKKRERIEELKRQYEAARLEKLSKYQGVNLFVKNLDDSIDSVK 349
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + F FG I +M D +
Sbjct: 350 LEEEFKPFGTITSA---------------------------------------RVMVD-E 369
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR--HGSAAERLL 255
G SKGF F+ ++S E + +I M+ + +P+ V+ A +KD + + A +
Sbjct: 370 HGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKPLYVALAQRKDVRRSQLEQQIQARNQM 429
Query: 256 AAQNPLSQADRPHQ-----LFADAP---PP-----APLPPPPPPINIMGLPPPPPSG 299
QN + P Q + P PP AP P P P + + PPP G
Sbjct: 430 RMQNAAATGGIPGQFIPPMFYGQQPGFFPPNGRGSAPFPGPNPQMMVPRGQIPPPQG 486
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 127/280 (45%), Gaps = 58/280 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 59 ASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALE 118
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 119 ELNYTPIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 178
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 179 AQDETGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKAN 238
Query: 182 --NIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASDASI 219
N+++ N+ P++ RD + G S+GF F+N+ + EA+ ++
Sbjct: 239 FTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQE-GKSRGFGFVNFTTHEAAYKAV 297
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
D ++G + + V A KK + + R A RL A
Sbjct: 298 DELNGNDFRGQELYVGRAQKKHEREEELRKSYEAARLEKA 337
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 112/248 (45%), Gaps = 26/248 (10%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+YV + V++ ELF + G V + + +D+ ++ +G+GF+ F E A A+
Sbjct: 240 TNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKS-RGFGFVNFTTHEAAYKAVD 298
Query: 95 IMNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKL 137
+N G+ + V +A H++ ++ G N++I NLD +VD+
Sbjct: 299 ELNGNDFRGQELYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDDK 358
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIR-VNKASSHQKNLDVGANIFIGNLDPEIMRDP 196
L FS FG I + + ++ + ++ K +QK + A +
Sbjct: 359 LRQMFSEFGPITSAKVMRDSLQEGEEEVKDQEKDKENQKEAENEAEAESAENAEKKAEKK 418
Query: 197 DT---GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
G SKGF F+ +++ + + ++ M+ + + N+P+ V+ A +KD + S E
Sbjct: 419 GDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVR----KSQLEA 474
Query: 254 LLAAQNPL 261
+ A+N L
Sbjct: 475 SIQARNQL 482
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 128/280 (45%), Gaps = 60/280 (21%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
SG A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 90 DYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
+ A+ MN L G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG
Sbjct: 66 ERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGN 124
Query: 148 IL--------------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVG 180
IL Q MN + L + + V S ++ ++G
Sbjct: 125 ILSCKVVCDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELG 184
Query: 181 A------NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEA 214
A NI++ N L ++MRD ++G+S+ F F+N+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
+ ++ M+G+ + R + YA + + +R R
Sbjct: 244 AQKAVVHMNGKEVSGRLL---YAGRAQKRVERQNELKRRF 280
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 136/346 (39%), Gaps = 83/346 (23%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G I++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI MN + L + + V S ++ ++GA NI++ NL +VDE+ L D
Sbjct: 150 AAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQD 209
Query: 141 TFSAFGVILQTPKIMN-----------------------MIKLYGKPI--------RVNK 169
FS FG +L K+M ++ + GK + R K
Sbjct: 210 LFSQFGKMLSV-KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 170 ASSHQKNLDV--------------GANIFIGNLDPEIMRD------------------PD 197
Q L G N+++ NLD I D +
Sbjct: 269 RVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE 328
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK----GDRHGSAAER 253
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + +++
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLST 388
Query: 254 LLAAQNP-LSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPPS 298
+ NP L +P F A +P PP G P P+
Sbjct: 389 MRTLSNPLLGSFQQPSSYFLPA-----VPQPPAQAAYYGCGPVTPT 429
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 52/186 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN L G+PIR+ ++ + VG NIFI NL+ I + D
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
D S+GF F+++ + EA+ +I+ M+G L +R + V + FK S+ +R R
Sbjct: 130 VVCDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FK--SRREREAELGAR 186
Query: 254 LLAAQN 259
L N
Sbjct: 187 ALEFTN 192
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 106/218 (48%), Gaps = 44/218 (20%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G ++YVG LD V+++ ++E F Q+G VV+V + +D T+ GYG++ + +DA A
Sbjct: 37 GTTSLYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 96
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
+ +N + L G+ IRV + G NIFI NLD +D K L++TFSAFG IL
Sbjct: 97 LNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSC 156
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
++ DP +G SKG+ F+ Y +
Sbjct: 157 ---------------------------------------KVAVDP-SGQSKGYGFVQYDT 176
Query: 212 FEASDASIDAMHGQYLCNRPISVS---YAFKKDSKGDR 246
EA+ +ID ++G L ++ + V + ++D G++
Sbjct: 177 DEAAQRAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEK 214
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/332 (21%), Positives = 127/332 (38%), Gaps = 82/332 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + E F GP+++ + D Q+ +GYGF+++ +E A A
Sbjct: 125 GVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQS-KGYGFVQYDTDEAAQRA 183
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG-----ANIFIGNLDPEVDEKLLYDTFSAFGV 147
I +N + L K + V + G N+++ NL + ++ L F FGV
Sbjct: 184 IDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGV 243
Query: 148 ILQTPKIMN----------------------MIKLYGKPI--------RVNKASSHQKNL 177
+ + + L GK + K S + L
Sbjct: 244 TTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETEL 303
Query: 178 --------------DVGANIFIGNLDP--------------------EIMRDPDTGNSKG 203
G+N+++ NLD ++MRDP TG S+G
Sbjct: 304 KQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-TGVSRG 362
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F+ +++ E + +I M+G+ + +P+ V+ A +K+ + R + ++ P +
Sbjct: 363 SGFVAFSTPEEASRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAV 422
Query: 264 ADR-----------PHQLFADAPPPAPLPPPP 284
R QLF PPA +PP P
Sbjct: 423 GPRMQMYPPGGPPMGQQLFYGQGPPAMIPPQP 454
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 128/280 (45%), Gaps = 60/280 (21%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
SG A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 90 DYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
+ A+ MN L G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG
Sbjct: 66 ERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGN 124
Query: 148 IL--------------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVG 180
IL Q MN + L + + V S ++ ++G
Sbjct: 125 ILSCKVVCDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELG 184
Query: 181 A------NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEA 214
A NI++ N L ++MRD ++G+S+ F F+N+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
+ ++ M+G+ + R + YA + + +R R
Sbjct: 244 AQKAVVHMNGKEVSGRLL---YAGRAQKRVERQNELKRRF 280
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 136/346 (39%), Gaps = 83/346 (23%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G I++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI MN + L + + V S ++ ++GA NI++ NL +VDE+ L D
Sbjct: 150 AAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQD 209
Query: 141 TFSAFGVILQTPKIMN-----------------------MIKLYGKPI--------RVNK 169
FS FG +L K+M ++ + GK + R K
Sbjct: 210 LFSQFGKMLSV-KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 170 ASSHQKNLDV--------------GANIFIGNLDPEIMRD------------------PD 197
Q L G N+++ NLD I D +
Sbjct: 269 RVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE 328
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK----GDRHGSAAER 253
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + +++
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLST 388
Query: 254 LLAAQNP-LSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPPS 298
+ NP L +P F A +P PP G P P+
Sbjct: 389 MRTLSNPLLGSFQQPSSYFLPA-----VPQPPAQAAYYGCGPVTPT 429
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 52/186 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN L G+PIR+ ++ + VG NIFI NL+ I + D
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
D S+GF F+++ + EA+ +I+ M+G L +R + V + FK S+ +R R
Sbjct: 130 VVCDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FK--SRREREAELGAR 186
Query: 254 LLAAQN 259
L N
Sbjct: 187 ALEFTN 192
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 43/220 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKNIDNKAMYDTFSAFGNILSC- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D ++G SKG+ F+++ +
Sbjct: 129 --------------------------------------KVAQD-ESGVSKGYGFVHFETE 149
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
EA++ SID ++G L + + V + + G A+
Sbjct: 150 EAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAK 189
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/252 (19%), Positives = 97/252 (38%), Gaps = 70/252 (27%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GE +YV + +++ + E+F + G + + H + +G+GF+ F +
Sbjct: 185 GEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITS-HKVMIKDDGKSRGFGFVAFEDPD 243
Query: 88 DADYAIKIMNMIKLYGKPI---------RVNKASSHQKNLDV--------------GANI 124
A+ A+ ++L GK + R K + Q+ L G N+
Sbjct: 244 AAEQAV-----LELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNL 298
Query: 125 FIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIF 184
++ NLD +D++ L F+ FG I +M
Sbjct: 299 YVKNLDDSIDDERLRKEFAPFGTITSAKVMM----------------------------- 329
Query: 185 IGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
+ G SKGF F+ +++ E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 ------------EEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRK 377
Query: 245 DRHGSAAERLLA 256
S + LA
Sbjct: 378 AHLASQYMQRLA 389
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 123/260 (47%), Gaps = 57/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSLAGPILSIRVCRDVATRRSLGYAYINFQQPADAELALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN + G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG IL
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEESIDNKALYDTFSTFGNILSCK 129
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVNKASSHQKN---LDVGA-- 181
Q MN + L + + V+ S Q+ L V A
Sbjct: 130 VVCDDHGSRGFGFVHFETREAAQQAISTMNGMLLNNRKVFVSHFKSRQEREAELGVRAME 189
Query: 182 --NIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASI 219
N+++ NL +I MRD D+G+S+GF F+N+ E + ++
Sbjct: 190 FTNVYVKNLQMDIDEQGLEELFSQFGKTLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFK 239
M+G+ + + + V A K
Sbjct: 249 MDMNGKEVRGQLLYVGRAQK 268
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 95/229 (41%), Gaps = 62/229 (27%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+YV L + E + ELF Q G ++V + +D + +G+GF+ F E+A A+
Sbjct: 191 TNVYVKNLQMDIDEQGLEELFSQFGKTLSVKVMRDDSGHS-RGFGFVNFEKHEEAQKAVM 249
Query: 95 IMNMIKLYGKPI---RVNKASSHQKNLDV-----------------GANIFIGNLDPEVD 134
MN ++ G+ + R K + Q L G N+++ NLD +D
Sbjct: 250 DMNGKEVRGQLLYVGRAQKWAERQNELKRKFQQMKQMKQDRLNHYQGVNLYVKNLDDSID 309
Query: 135 EKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMR 194
+ L FS +GVI + K+M
Sbjct: 310 NERLRKEFSPYGVI-TSAKVMT-------------------------------------- 330
Query: 195 DPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G+SKGF F+ ++S E + ++ M+G L +P+ V+ A +KD +
Sbjct: 331 --EGGHSKGFGFVCFSSPEEATKAVTEMNGCILGTKPLYVALAQRKDER 377
>gi|297853192|ref|XP_002894477.1| hypothetical protein ARALYDRAFT_474538 [Arabidopsis lyrata subsp.
lyrata]
gi|297340319|gb|EFH70736.1| hypothetical protein ARALYDRAFT_474538 [Arabidopsis lyrata subsp.
lyrata]
Length = 417
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 113/234 (48%), Gaps = 46/234 (19%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++Y G + +V+E L+ E+F +GP+ + + + + YGF+ + A AI
Sbjct: 60 SVYAGNIHTQVTEILLQEIFASTGPIESCKL----IRKDKSSYGFVHYFDRRCASMAIMT 115
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N ++G+P++VN A + + D + NIF+G+L PEV + L+D+FSAF
Sbjct: 116 LNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAF-------- 167
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
N S D +M D TG S+GF F+++ + +
Sbjct: 168 --------------NSCS-----------------DARVMWDQKTGRSRGFGFVSFRNQQ 196
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKG-DRHGSAAERLLAAQNPLSQADR 266
+ +I+ M+G++L +R I ++A K + G D+H S + ++ N S+ R
Sbjct: 197 DAQTAINEMNGKWLSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGR 250
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 88/223 (39%), Gaps = 48/223 (21%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
I+VG L +V++ +++ F + + D+ T +G+GF+ F ++DA AI M
Sbjct: 146 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 97 NMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMN 156
N L + IR N A+ GA FG + +
Sbjct: 206 NGKWLSSRQIRCNWATK-------GA---------------------TFGEDKHSSDGKS 237
Query: 157 MIKLYGKPIRVNKASSHQ---KNLDVGANIFIGNLDPEI----------------MRDPD 197
+++L + S++ +N +++GNL PE+ + +
Sbjct: 238 VVELTNGSSEDGRELSNEDAPENNPQYTTVYVGNLSPEVTQLDLHRLFYTLGAGAIEEVR 297
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQ-YLCNRPISVSYAFK 239
KGF F+ Y + + + +I + Q YL +R I S+ K
Sbjct: 298 VQRDKGFGFVRYNTHDEAALAIQMGNAQPYLFSRQIKCSWGNK 340
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 43/220 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKNIDNKAMYDTFSAFGNILSC- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D ++G SKG+ F+++ +
Sbjct: 129 --------------------------------------KVAQD-ESGVSKGYGFVHFETE 149
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
EA++ SID ++G L + + V + + G A+
Sbjct: 150 EAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAK 189
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/252 (19%), Positives = 97/252 (38%), Gaps = 70/252 (27%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GE +YV + +++ + E+F + G + + H + +G+GF+ F +
Sbjct: 185 GEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITS-HKVMIKDDGKSRGFGFVAFEDPD 243
Query: 88 DADYAIKIMNMIKLYGKPI---------RVNKASSHQKNLDV--------------GANI 124
A+ A+ ++L GK + R K + Q+ L G N+
Sbjct: 244 AAEQAV-----LELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNL 298
Query: 125 FIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIF 184
++ NLD +D++ L F+ FG I +M
Sbjct: 299 YVKNLDDSIDDERLRKEFAPFGTITSAKVMM----------------------------- 329
Query: 185 IGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
+ G SKGF F+ +++ E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 ------------EEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRK 377
Query: 245 DRHGSAAERLLA 256
S + LA
Sbjct: 378 AHLASQYMQRLA 389
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 56/287 (19%)
Query: 12 STPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRV 71
ST +S ++ + + A++YVG L+ ++E L++E+F G V ++ + +D +
Sbjct: 37 STSATESTAEGEQASSSSVSETTASLYVGELEPSINEALLFEIFSPIGQVSSIRVCRDAL 96
Query: 72 TQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGANIFIGNLD 130
T+ GY ++ + +D + AI +N + G+PIR+ + K + N+FI NL
Sbjct: 97 TKRSLGYAYVNYHNVKDGEKAIDELNYSVVKGQPIRIMWSQRDPAKRRNGEGNVFIKNLH 156
Query: 131 PEVDEKLLYDTFSAFGVIL--------------------QTPK------------IMNMI 158
P +D K L+DTFSAFG IL ++P+ ++N
Sbjct: 157 PAIDNKALHDTFSAFGRILSCKVATDNFGQSKGFGFVHFESPEAAQAAIENVNGMLLNNN 216
Query: 159 KLYGKP--IRVNKASSHQKNLDVGANIFIGNLDPE--------------------IMRDP 196
++Y P R ++ S ++ + N+++ N+D E + +D
Sbjct: 217 EVYVGPHVARRDRQSKLEEVIKSFTNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDA 276
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G S+GFAF+NY EA+ SI++++ Q + + V A KK +
Sbjct: 277 E-GKSRGFAFVNYEEHEAAVKSIESLNDQDYKGKKLYVGRAQKKSER 322
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 118/281 (41%), Gaps = 69/281 (24%)
Query: 21 QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGF 80
Q+KLE E +YV +D + SE + ELF G V + ++ KD ++ +G+ F
Sbjct: 230 QSKLE---EVIKSFTNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKS-RGFAF 285
Query: 81 IEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLD-----------------VGAN 123
+ + E A +I+ +N GK + V +A + L+ G N
Sbjct: 286 VNYEEHEAAVKSIESLNDQDYKGKKLYVGRAQKKSERLEELKKQYEAARIEKLTKSQGVN 345
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+F+ NLD +D++ L + F +FG I + K+M +D
Sbjct: 346 LFVKNLDDSIDDEKLKEEFQSFGTI-SSVKVM---------------------ID----- 378
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++G SKGF F++++S E + +I M+ L +P+ V+ A +KD +
Sbjct: 379 -------------ESGKSKGFGFVSFSSPEEASRAISEMNQHMLAGKPLYVALAQRKDVR 425
Query: 244 GDRHGSAAERLLAAQNPLSQADRPHQLFADAPPPAPLPPPP 284
S E+ + A+N L R Q A P P P
Sbjct: 426 ----RSQLEQQIQARNQL----RLQQAAAAGGLPGQFIPTP 458
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 43/220 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKNIDNKAMYDTFSAFGNILSC- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D ++G SKG+ F+++ +
Sbjct: 129 --------------------------------------KVAQD-ESGVSKGYGFVHFETE 149
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
EA++ SID ++G L + + V + + G A+
Sbjct: 150 EAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAK 189
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/252 (19%), Positives = 97/252 (38%), Gaps = 70/252 (27%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GE +YV + +++ + ++F + G + + H + +G+GF+ F +
Sbjct: 185 GEKAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTITS-HKVMIKDDGKSRGFGFVAFEDPD 243
Query: 88 DADYAIKIMNMIKLYGKPI---------RVNKASSHQKNLDV--------------GANI 124
A+ A+ ++L GK + R K + Q+ L G N+
Sbjct: 244 AAEQAV-----LELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNL 298
Query: 125 FIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIF 184
++ NLD +D++ L F+ FG I +M
Sbjct: 299 YVKNLDDSIDDERLRKEFAPFGTITSAKVMM----------------------------- 329
Query: 185 IGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
+ G SKGF F+ +++ E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 ------------EEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRK 377
Query: 245 DRHGSAAERLLA 256
S + LA
Sbjct: 378 AHLASQYMQRLA 389
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 43/220 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKNIDNKAMYDTFSAFGNILSC- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D ++G SKG+ F+++ +
Sbjct: 129 --------------------------------------KVAQD-ESGVSKGYGFVHFETE 149
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
EA++ SID ++G L + + V + + G A+
Sbjct: 150 EAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAK 189
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/252 (19%), Positives = 97/252 (38%), Gaps = 70/252 (27%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GE +YV + +++ + E+F + G + + H + +G+GF+ F +
Sbjct: 185 GEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITS-HKVMIKDDGKSRGFGFVAFEDPD 243
Query: 88 DADYAIKIMNMIKLYGKPI---------RVNKASSHQKNLDV--------------GANI 124
A+ A+ ++L GK + R K + Q+ L G N+
Sbjct: 244 AAEQAV-----LELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNL 298
Query: 125 FIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIF 184
++ NLD +D++ L F+ FG I +M
Sbjct: 299 YVKNLDDSIDDERLRKEFAPFGTITSAKVMM----------------------------- 329
Query: 185 IGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
+ G SKGF F+ +++ E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 ------------EEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRK 377
Query: 245 DRHGSAAERLLA 256
S + LA
Sbjct: 378 AHLASQYMQRLA 389
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 43/220 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKNIDNKAMYDTFSAFGNILSC- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D ++G SKG+ F+++ +
Sbjct: 129 --------------------------------------KVAQD-ESGVSKGYGFVHFETE 149
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
EA++ SID ++G L + + V + + G A+
Sbjct: 150 EAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAK 189
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/252 (19%), Positives = 97/252 (38%), Gaps = 70/252 (27%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GE +YV + +++ + E+F + G + + H + +G+GF+ F +
Sbjct: 185 GEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITS-HKVMIKDDGKSRGFGFVAFEDPD 243
Query: 88 DADYAIKIMNMIKLYGKPI---------RVNKASSHQKNLDV--------------GANI 124
A+ A+ ++L GK + R K + Q+ L G N+
Sbjct: 244 AAEQAV-----LELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNL 298
Query: 125 FIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIF 184
++ NLD +D++ L F+ FG I +M
Sbjct: 299 YVKNLDDSIDDERLRKEFAPFGTITSAKVMM----------------------------- 329
Query: 185 IGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
+ G SKGF F+ +++ E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 ------------EEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRK 377
Query: 245 DRHGSAAERLLA 256
S + LA
Sbjct: 378 AHLASQYMQRLA 389
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 43/220 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKNIDNKAMYDTFSAFGNILSC- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D ++G SKG+ F+++ +
Sbjct: 129 --------------------------------------KVAQD-ESGVSKGYGFVHFETE 149
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
EA++ SID ++G L + + V + + G A+
Sbjct: 150 EAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAK 189
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/252 (19%), Positives = 97/252 (38%), Gaps = 70/252 (27%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GE +YV + +++ + ++F + G + + H + +G+GF+ F +
Sbjct: 185 GEKAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTITS-HKVMIKDDGKSRGFGFVAFEDPD 243
Query: 88 DADYAIKIMNMIKLYGKPI---------RVNKASSHQKNLDV--------------GANI 124
A+ A+ ++L GK + R K + Q+ L G N+
Sbjct: 244 AAEQAV-----LELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNL 298
Query: 125 FIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIF 184
++ NLD +D++ L F+ FG I +M
Sbjct: 299 YVKNLDDSIDDERLRKEFAPFGTITSAKVMM----------------------------- 329
Query: 185 IGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
+ G SKGF F+ +++ E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 ------------EEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRK 377
Query: 245 DRHGSAAERLLA 256
S + LA
Sbjct: 378 AHLASQYMQRLA 389
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 129/281 (45%), Gaps = 60/281 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 59 ASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATADGEKALE 118
Query: 95 IMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL-- 149
+N + G+P R+ + + +KN N+FI NLD +D K L+DTF+AFG IL
Sbjct: 119 ELNYTLIKGRPCRIMWSQRDPALRKNGQ--GNVFIKNLDVAIDNKALHDTFAAFGNILSC 176
Query: 150 -------------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVG 180
Q K +N + L K + V K K ++
Sbjct: 177 KVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMK 236
Query: 181 A---NIFIGNLDPEIMRD-------------------PDTGNSKGFAFINYASFEASDAS 218
A N+++ N+ P++ D G S+GF F+N+ + E++ +
Sbjct: 237 ANFTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSRGFGFVNFTTHESASKA 296
Query: 219 IDAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
+D ++G+ + + V A KK + + R A RL A
Sbjct: 297 VDDLNGKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKA 337
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 113/258 (43%), Gaps = 41/258 (15%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+YV + V+E ELF + G V + + +D+ ++ +G+GF+ F E A A+
Sbjct: 241 NVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKS-RGFGFVNFTTHESASKAVDD 299
Query: 96 MNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N +G+ + V +A H++ ++ G N++I NLD +VD+ L
Sbjct: 300 LNGKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDKL 359
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
FS FG I + K+M G +K Q + + E ++ +
Sbjct: 360 RQMFSEFGPIT-SAKVMRETPTEGDE---DKKEETQDDKEKENKEEAKEEANEETKEGEE 415
Query: 199 ---------------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ +++ + + ++ M+ + + N+P+ V+ A +KD +
Sbjct: 416 AKDDKKTEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVR 475
Query: 244 GDRHGSAAERLLAAQNPL 261
S E + A+N L
Sbjct: 476 ----KSQLEASIQARNQL 489
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 42/211 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD VSE L++++F G V ++ + +D +T+T GY ++ F E AI+
Sbjct: 43 ASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIE 102
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + G+P R+ + G+ NIFI NL P++D K LY+TFS FG IL + K
Sbjct: 103 KLNYTAIKGRPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKTLYETFSVFGNIL-SCK 161
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
I N +TG SKGF F+++ + E
Sbjct: 162 IAN---------------------------------------DETGKSKGFGFVHFENEE 182
Query: 214 ASDASIDAMHGQYLCNRPISVS-YAFKKDSK 243
A+ +IDA++G L + + V+ + KKD +
Sbjct: 183 AAREAIDAINGMLLNGQEVYVAPHVSKKDRQ 213
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 126/322 (39%), Gaps = 90/322 (27%)
Query: 21 QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGF 80
Q+KL+ E+ +YV LD + +E LF G + +V + KD ++ +G+GF
Sbjct: 213 QSKLD---EARANFTNVYVKNLDLEATEEDFENLFKPYGTITSVALEKDAEGKS-RGFGF 268
Query: 81 IEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLD-----------------VGAN 123
++F EDA A++ +N + G+ + V +A + L G N
Sbjct: 269 VDFENHEDAVKAVEALNDTEYKGQTLYVGRAQKKYERLQELKKQYQASKLEKLAKYQGIN 328
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+FI NLD +D++ L + F+ FG I
Sbjct: 329 LFIKNLDDSIDDEKLKEEFAPFGTITSA-------------------------------- 356
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+MR + G SKGF F+ +++ E + +I + Q + +P+ V+ A +KD
Sbjct: 357 -------RVMR-TENGKSKGFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRKDV- 407
Query: 244 GDRHGSAAERLLAAQNPLSQADR----------PHQ----LFADAPPPAPLP-PPPPPIN 288
R A+++ A Q P Q +F PP +P P P
Sbjct: 408 --RRSQLAQQIQARNQMRYQQATAAAAAAAAGIPGQFMPPMFYGVVPPRGMPFNGPNPQQ 465
Query: 289 IMGLPP-----------PPPSG 299
+ G+PP PPP G
Sbjct: 466 LGGMPPQQFRNGPAYGMPPPQG 487
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 126/264 (47%), Gaps = 56/264 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L +V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPEVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + KPIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 71 TMNFDAIKNKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKTIDNKAMYDTFSAFGNILSCR 129
Query: 153 KIMN---MIKLYG-----------KPI-RVNKASSHQKNLDVG----------------- 180
+ K YG K I +VN + K + VG
Sbjct: 130 VATDEEAASKGYGFVHFETEEAANKAISKVNGMLLNNKKVYVGKFIPRKEREKMLGDKAR 189
Query: 181 --ANIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASI 219
N++I N E+ D D+G ++GF F+++ ++++ ++
Sbjct: 190 CFTNVYIKNFGDELDDDKLLVIFEKYGKITSAKVMTDDSGKNRGFGFVSFEEPDSAERAV 249
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ ++G+ + RP+ V A KK +
Sbjct: 250 EELNGKDMGGRPLYVGRAQKKAER 273
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/233 (19%), Positives = 97/233 (41%), Gaps = 58/233 (24%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G+ +Y+ D++ + + +F + G + + + D + ++G+GF+ F +
Sbjct: 185 GDKARCFTNVYIKNFGDELDDDKLLVIFEKYGKITSAKVMTDD-SGKNRGFGFVSFEEPD 243
Query: 88 DADYAIKIMNMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLD 130
A+ A++ +N + G+P+ R K + Q L G N+++ NLD
Sbjct: 244 SAERAVEELNGKDMGGRPLYVGRAQKKAERQSELKRHFEQLKQERLNRYQGVNLYVKNLD 303
Query: 131 PEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 190
+D++ L F FG I
Sbjct: 304 DALDDERLRKEFGPFGNITSA--------------------------------------- 324
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++M D + G SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 325 KVMTDAN-GRSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQRKEDR 376
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 127/289 (43%), Gaps = 67/289 (23%)
Query: 24 LEGGGESGDGD-----------ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVT 72
GGG + GD A++YVG LD + E +++LF Q PV+++ + +D+
Sbjct: 451 FSGGGAAVHGDDGTYCGGRFANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQAR 510
Query: 73 QTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDP 131
+ GY ++ F +DA A++ +N L GKPIR+ + G AN+FI NLDP
Sbjct: 511 RASLGYAYVNFASPQDATNALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDP 570
Query: 132 EVDEKLLYDTFSAFGVILQTP---------------------------KIMNMIKLYGKP 164
+D K L DTF+AFG +L K +N + + K
Sbjct: 571 SIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQ 630
Query: 165 IRVNKASSHQ-KNLDVGA----NIFIGNLDPE--------------------IMRDPDTG 199
+ V HQ +N G+ N+++ NL +MRD +G
Sbjct: 631 VYVGLFVRHQERNRGNGSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDA-SG 689
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
SK F F+N+ S +++ A+++ ++G + V Y K K +R
Sbjct: 690 MSKCFGFVNFQSSDSAAAAVEHLNGATFNDD--KVWYVGKAQRKSEREA 736
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 48/176 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI--------------------------- 154
A++++G+LD + E LYD F +L
Sbjct: 473 ASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALE 532
Query: 155 -MNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEIMRDP---------------- 196
+N L GKPIR+ + G AN+FI NLDP I
Sbjct: 533 HLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSCKI 592
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
+ G SKG+ F+ + EA+ +I ++G + ++ + V + + +GS
Sbjct: 593 ALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGS 648
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ LDD V++ + ELF + G + + + D +G GF+ F+ E+A A+ +M
Sbjct: 758 LYLKNLDDSVNDEKLKELFSEFGTITSCKVMLD-PQGLSKGSGFVAFLTPEEATRALNVM 816
Query: 97 NMIKLYGKPIRVNKASSHQK 116
N + KP+ V A ++
Sbjct: 817 NGKMIGRKPLYVAVAQRKEE 836
>gi|62751624|ref|NP_001015753.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
gi|58476781|gb|AAH89689.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
Length = 217
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 100/202 (49%), Gaps = 44/202 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
+ D SKG+AF+++ +
Sbjct: 130 VVC-----------------------------------------DENGSKGYAFVHFETQ 148
Query: 213 EASDASIDAMHGQYLCNRPISV 234
+A+D +I+ M+G L +R + V
Sbjct: 149 DAADRAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 9/122 (7%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F ++ AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + ++ ++GA N++I N ++D++ L +TFS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKY 214
Query: 146 GV 147
G
Sbjct: 215 GC 216
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 121/263 (46%), Gaps = 54/263 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ F D + A++
Sbjct: 39 ASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERALE 98
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G+ N+FI NLD +D K L+DTFSAFG IL
Sbjct: 99 SLNYTLIKGKPCRIMWSQRDPSLRKTGSGNVFIKNLDTSIDNKALHDTFSAFGNILSCKI 158
Query: 153 -------------------------------KIMNMIKLY-GKPI-RVNKASSHQKNLDV 179
++N K+Y G+ I R + + ++
Sbjct: 159 ALDESGNSKGYGFVHYETEEAADNAIKHVDGMLLNDKKVYVGRHIPRKERQAKIEQIRAK 218
Query: 180 GANIFIGNLDPEI-------------------MRDPDTGNSKGFAFINYASFEASDASID 220
N+++ NLD I ++ + G SKGF FIN+ ++E + ++D
Sbjct: 219 FTNVYVKNLDESINDEQFKEMFSKFGPITSALVQTDEEGKSKGFGFINFENYEDAHKAVD 278
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
++ + + V+ A KK +
Sbjct: 279 TLNETEHNGKTLYVARAQKKTER 301
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 58/224 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV LD+ +++ E+F + GP+ + + D ++ +G+GFI F EDA A+ +
Sbjct: 222 VYVKNLDESINDEQFKEMFSKFGPITSALVQTDEEGKS-KGFGFINFENYEDAHKAVDTL 280
Query: 97 NMIKLYGKPIRVNKASS------------HQKNLDV-----GANIFIGNLDPEVDEKLLY 139
N + GK + V +A Q L+ G N++I NLD ++D++ L
Sbjct: 281 NETEHNGKTLYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDEKLR 340
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS +GVI ++M D + G
Sbjct: 341 QEFSVYGVITSA---------------------------------------KVMCD-EKG 360
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S + + ++ M+G+ + ++PI V+ A +K+ +
Sbjct: 361 TSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVALAQRKEVR 404
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 125/279 (44%), Gaps = 56/279 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 64 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALE 123
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 124 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 183
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 184 AQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 243
Query: 182 --NIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
NI+I N+ E+ D G S+GF F+N+ + EA+ ++D
Sbjct: 244 FTNIYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVD 303
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
++G+ + + V A KK + + R A R+ A
Sbjct: 304 DLNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARMEKA 342
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 19/136 (13%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IY+ + +V++ +LF G V + + +D+ ++ +G+GF+ F E A A+ +
Sbjct: 247 IYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQEGKS-RGFGFVNFTTHEAAAKAVDDL 305
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N G+ + V +A H++ ++ G N++I NLD +VD++ L
Sbjct: 306 NGKDFRGQDLYVGRAQKKHEREEELRKSYEAARMEKANKYQGVNLYIKNLDDDVDDEKLR 365
Query: 140 DTFSAFGVILQTPKIM 155
F+ FG I + K+M
Sbjct: 366 QLFADFGPIT-SAKVM 380
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 127/280 (45%), Gaps = 58/280 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 60 ASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALE 119
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 120 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 179
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 180 AQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 239
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N+ E + RD + G S+GF F+N+ + E++ ++
Sbjct: 240 FTNIYVKNISTEASDDEFRELFEKYGDITSSSLARDQE-GKSRGFGFVNFTTHESAAKAV 298
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
+ +HG+ + + V A KK + + R A RL A
Sbjct: 299 EELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKA 338
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 19/136 (13%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV + + S+ ELF + G + + + +D+ ++ +G+GF+ F E A A++ +
Sbjct: 243 IYVKNISTEASDDEFRELFEKYGDITSSSLARDQEGKS-RGFGFVNFTTHESAAKAVEEL 301
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
+ G+ + V +A H++ ++ G N++I NLD +VD++ L
Sbjct: 302 HGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLR 361
Query: 140 DTFSAFGVILQTPKIM 155
F+ FG I + K+M
Sbjct: 362 QMFAEFGPIT-SAKVM 376
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 125/266 (46%), Gaps = 61/266 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+++YVG L V+E +++E+F G ++++ + +D T+ GY +I F DA+ A+
Sbjct: 74 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 133
Query: 95 IMNMIKLYGKPIRVNKASSHQ----KNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
MN + G+PIR+ SH+ + +G NIFI NL+ +D K LYDTFS FG IL
Sbjct: 134 TMNFEMIKGQPIRI--MWSHRDPGLRKSGMG-NIFIKNLENSIDNKALYDTFSTFGSILS 190
Query: 151 TPKI--------------------------MNMIKLYGKPIRVNKASSHQKN-LDVGA-- 181
+ + MN + L + + V S QK ++GA
Sbjct: 191 SKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARA 250
Query: 182 ----NIFIGNL--------------------DPEIMRDPDTGNSKGFAFINYASFEASDA 217
N+++ NL ++MRD + G S+GF F+N+ E +
Sbjct: 251 LGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSN-GQSRGFGFVNFEKHEEAQK 309
Query: 218 SIDAMHGQYLCNRPISVSYAFKKDSK 243
++D M+G+ + + + V A K+ +
Sbjct: 310 AVDHMNGKEVRGQLLYVGRAQKRAER 335
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 103/233 (44%), Gaps = 59/233 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G +YV L + E + +LF Q G + +V + +D Q+ +G+GF+ F E
Sbjct: 247 GARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQS-RGFGFVNFEKHE 305
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSH-----------------QKNLDVGANIFIGNLD 130
+A A+ MN ++ G+ + V +A ++N G N+++ NLD
Sbjct: 306 EAQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQGVNLYVKNLD 365
Query: 131 PEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 190
++++ L + FSA+GVI + K+M
Sbjct: 366 DSINDERLKEVFSAYGVIT-SAKVMT---------------------------------- 390
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++ +SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 391 ------ESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 437
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 43/220 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKNIDNKAMYDTFSAFGNILSC- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D ++G SKG+ F+++ +
Sbjct: 129 --------------------------------------KVAQD-ESGVSKGYGFVHFETE 149
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
EA++ SID ++G L + + V + + G A+
Sbjct: 150 EAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAK 189
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/252 (19%), Positives = 97/252 (38%), Gaps = 70/252 (27%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GE +YV + +++ + E+F + G + + H + +G+GF+ F +
Sbjct: 185 GEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITS-HKVMIKDDGKSRGFGFVAFEDPD 243
Query: 88 DADYAIKIMNMIKLYGKPI---------RVNKASSHQKNLDV--------------GANI 124
A+ A+ ++L GK + R K + Q+ L G N+
Sbjct: 244 AAEQAV-----LELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVNL 298
Query: 125 FIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIF 184
++ NLD ++++ L F+ FG I +M
Sbjct: 299 YVKNLDDSINDERLRREFAPFGTITSAKVMM----------------------------- 329
Query: 185 IGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
+ G SKGF F+ +++ E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 ------------EDGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRK 377
Query: 245 DRHGSAAERLLA 256
S + LA
Sbjct: 378 AHLASQYMQRLA 389
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 112/221 (50%), Gaps = 45/221 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L+++ F + GPV+++ + +D VT+ GY ++ F+ DA A+
Sbjct: 10 ASLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K LY+ FSAFG IL +
Sbjct: 70 TMNFDVVKGKAIRLMWSQRDAYLRKSGIG-NVFIKNLDKSIDNKSLYECFSAFGKIL-SS 127
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
K+M D SKG+AF+++ S
Sbjct: 128 KVM----------------------------------------SDDRGSKGYAFVHFQSQ 147
Query: 213 EASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
A+D +I+ M+G++L + + V + +KD + + A+E
Sbjct: 148 SAADRAIEEMNGKFLKDCKVFVGRFKSRKDREAELRNKASE 188
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 59/220 (26%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+Y+ D + + + E+F G +++V + + ++ +G+GF+ F E A A++
Sbjct: 190 TNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKS-RGFGFVSFDSHEAARKAVE 248
Query: 95 IMNMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKL 137
MN ++ G+PI R K Q L GA ++I NLD +D++
Sbjct: 249 EMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQLKKERIRGCQGAKLYIKNLDENIDDEK 308
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L FS+FG I + K+M +
Sbjct: 309 LRKEFSSFGSISRV-KVM----------------------------------------QE 327
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
G SKGF I ++S E + ++ M+G+ L ++P++++ A
Sbjct: 328 EGQSKGFGLICFSSSEDAARAMTVMNGRILGSKPLNIALA 367
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 43/220 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A++
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALE 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 71 GMNFDIIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKTIDNKAMYDTFSAFGNILSC- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D +TG SKG+ F+++ +
Sbjct: 129 --------------------------------------KVAQD-ETGASKGYGFVHFETE 149
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
EA++ SI+ ++G L + + V + + G A+
Sbjct: 150 EAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAK 189
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 96/234 (41%), Gaps = 60/234 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GE +YV + S+ ++ E+F + G + + H + + +G+GF+ F +
Sbjct: 185 GEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITS-HKVMYKEDGSSRGFGFVAFEDPD 243
Query: 88 DADYAIKIMNMIKLY-GKPI---RVNKASSHQKNLDV--------------GANIFIGNL 129
A+ A +N +L GKP+ R K + QK L G N+++ NL
Sbjct: 244 AAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNL 303
Query: 130 DPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLD 189
D +D++ L F+ FG I A + +
Sbjct: 304 DDTIDDERLRKEFAPFGTI------------------------------TSAKVML---- 329
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 -------EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 376
>gi|195024447|ref|XP_001985876.1| GH21052 [Drosophila grimshawi]
gi|193901876|gb|EDW00743.1| GH21052 [Drosophila grimshawi]
Length = 645
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 126/266 (47%), Gaps = 59/266 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E ++E F +GPV+++ + +D VT+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + KPIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVG-NVFIKNLDKAIDNKAIYDTFSAFGNILSCK 120
Query: 153 ----------------------------KIMNMIKLYGKPIRVNK---ASSHQKNLDVGA 181
K+ M+ L GK + V K +K L A
Sbjct: 121 VATDEKGHSKGYGFVHFETEEAANTSIDKVNGML-LNGKKVYVGKFIPRKEREKELGEKA 179
Query: 182 ----NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDAS 218
N++I N D E +++ D G SKGF F+ Y + EA++A+
Sbjct: 180 KLFTNVYIKNFTDEFDDEKLKENFEPYGKITSYKVMSKDDGKSKGFGFVAYETTEAAEAA 239
Query: 219 IDAMHGQYLCN-RPISVSYAFKKDSK 243
+ A++G+ + + + V+ A KK +
Sbjct: 240 VQALNGKDMGEGKTLYVARAQKKAER 265
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 93/235 (39%), Gaps = 61/235 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVH-MPKDRVTQTHQGYGFIEFMGE 86
GE +Y+ D+ + + E F G + + M KD +G+GF+ +
Sbjct: 176 GEKAKLFTNVYIKNFTDEFDDEKLKENFEPYGKITSYKVMSKD--DGKSKGFGFVAYETT 233
Query: 87 EDADYAIKIMNMIKL-YGKPI---RVNKASSHQKNLD--------------VGANIFIGN 128
E A+ A++ +N + GK + R K + Q+ L G N+++ N
Sbjct: 234 EAAEAAVQALNGKDMGEGKTLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKN 293
Query: 129 LDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNL 188
LD +D++ L FS +G I
Sbjct: 294 LDDSIDDERLRKEFSLYGTI---------------------------------------T 314
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++M D + G SKGF F+ + S + ++ ++G+ + ++P+ V+ A +K+ +
Sbjct: 315 SAKVMTDEE-GRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALAQRKEER 368
>gi|449550716|gb|EMD41680.1| hypothetical protein CERSUDRAFT_110250 [Ceriporiopsis subvermispora
B]
Length = 448
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 108/211 (51%), Gaps = 45/211 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG--YGFIEFMGEEDADYA 92
A +YVG L +V+E ++ E+F +GPV +V + DR Q H G YGF+E+M A+ A
Sbjct: 14 AHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQ-HGGLNYGFVEYMDMRAAETA 72
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGAN---IFIGNLDPEVDEKLLYDTFSAFGVIL 149
++ +N K++ IRVN A Q+N + +N +F+G+L PEV++++L FSAFG +
Sbjct: 73 LQTLNGRKIFDTEIRVNWAYQGQQNKEDTSNHFHVFVGDLSPEVNDEVLAKAFSAFGTL- 131
Query: 150 QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINY 209
D +M D ++G S+G+ F+ +
Sbjct: 132 --------------------------------------SDARVMWDMNSGKSRGYGFLAF 153
Query: 210 ASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
++ +I M+G++L +R I V++A +K
Sbjct: 154 RDKTDAEQAIATMNGEWLGSRAIRVNWANQK 184
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 43/220 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKNIDNKAMYDTFSAFGNILSC- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D ++G SKG+ F+++ +
Sbjct: 129 --------------------------------------KVAQD-ESGVSKGYGFVHFETE 149
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
EA++ SID ++G L + + V + + G A+
Sbjct: 150 EAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAK 189
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/252 (20%), Positives = 100/252 (39%), Gaps = 70/252 (27%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GE +YV + +++ + E+F + G + + H + +G+GF+ F +
Sbjct: 185 GEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITS-HKVMIKDDGKSRGFGFVAFEDPD 243
Query: 88 DADYAIKIMNMIKLYGKPI---------RVNKASSHQKNLDV--------------GANI 124
A+ A+ ++L GK + R K + Q+ L G N+
Sbjct: 244 AAEQAV-----LELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVNL 298
Query: 125 FIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIF 184
++ NLD ++++ L F+ FG I + K+M
Sbjct: 299 YVKNLDDSINDERLRREFAPFGTIT-SAKVM----------------------------- 328
Query: 185 IGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
M D G SKGF F+ +++ E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 329 --------MED---GRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRK 377
Query: 245 DRHGSAAERLLA 256
S + LA
Sbjct: 378 AHLASQYMQRLA 389
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 130/282 (46%), Gaps = 61/282 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D +++ GY ++ + D + A++
Sbjct: 61 ASLYVGELDTSVTEAMLFELFSQIGSVASIRVCRDAISRRSLGYAYVNYNTTADGEKALE 120
Query: 95 IMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL-- 149
+N + G+P R+ + + +KN N+FI NLD +D K L+DTF+AFG IL
Sbjct: 121 ELNYTLIKGRPCRIMWSQRDPALRKNGQ--GNVFIKNLDVAIDNKALHDTFAAFGNILSC 178
Query: 150 -------------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVG 180
Q K +N + L K + V K K ++
Sbjct: 179 KVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMK 238
Query: 181 A---NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDA 217
A NI++ N+ E + RD +TG S+GF F+N+ + E +
Sbjct: 239 ANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHEHAAT 298
Query: 218 SIDAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
++D ++G+ + + V A KK + + R A R+ A
Sbjct: 299 AVDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARIEKA 340
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 129/297 (43%), Gaps = 34/297 (11%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
IYV + + +E ELF + G V + + +D T +G+GF+ F+ E A A+
Sbjct: 243 NIYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHEHAATAVDE 302
Query: 96 MNMIKLYGKPIRVNKAS-SHQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N G+ + V +A H++ ++ G N+++ NLD ++D++ L
Sbjct: 303 LNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARIEKASKYQGVNLYVKNLDDDIDDEKL 362
Query: 139 YDTFSAFGVILQTPKIM------NMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
+ F +FG I + K+M K K ++ + G + E
Sbjct: 363 RELFQSFGSIT-SAKVMRDTPAETAEAEEKKEKDEEKNKENKDTKETKETKKEGEAETEE 421
Query: 193 MRDPDT----GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
P G SKGF F+ + + + + ++ M+ + + N+P+ V+ A +KD + +
Sbjct: 422 ASAPKAKRSLGKSKGFGFVCFNNPDEATKAVSDMNQRMVNNKPLYVALAQRKDVRKSQLE 481
Query: 249 SA--AERLLAAQNPLSQADRPHQLFADAP---PPAPLPPPPPPINIMGLPPPPPSGL 300
++ A + Q +QA P Q + AP PP P P G+ PP +G+
Sbjct: 482 ASIQARNQIRMQQAAAQAGMPQQ-YMQAPMFFPPGAQQPGFLPQGGRGMQFPPQAGM 537
>gi|426201609|gb|EKV51532.1| hypothetical protein AGABI2DRAFT_189771 [Agaricus bisporus var.
bisporus H97]
Length = 469
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 108/215 (50%), Gaps = 45/215 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG--YGFIEFMGEEDADYA 92
A +YVG L +V+E ++ E+F +GPV +V + DR Q H G YGF+E+M A+ A
Sbjct: 16 AHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQ-HGGLNYGFVEYMDMRSAETA 74
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA---NIFIGNLDPEVDEKLLYDTFSAFGVIL 149
++ +N K++ IRVN A Q+N + + ++F+G+L PEV++ +L FSAFG +
Sbjct: 75 LQTLNGRKIFDTEIRVNWAYQGQQNKEDTSGHYHVFVGDLSPEVNDDVLAKAFSAFGTL- 133
Query: 150 QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINY 209
D +M D ++G S+G+ F+ +
Sbjct: 134 --------------------------------------SDARVMWDMNSGKSRGYGFLAF 155
Query: 210 ASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
++ +I M+G++L +R I V++A +K G
Sbjct: 156 RDKTDAEQAIATMNGEWLGSRAIRVNWANQKTQGG 190
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 97/238 (40%), Gaps = 17/238 (7%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E G ++VG L +V++ ++ + F G + + + D + +GYGF+ F + D
Sbjct: 101 EDTSGHYHVFVGDLSPEVNDDVLAKAFSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTD 160
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
A+ AI MN L + IRVN A+ + GA + P + G
Sbjct: 161 AEQAIATMNGEWLGSRAIRVNWANQKTQG---GAPAVQQSPRPAGSTGGAPAPINFQGGP 217
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIF--IGNLDPEIMRDPDTGNSKGFAF 206
L ++ Y + V + D+ +F IG L EI D +GFAF
Sbjct: 218 LSYESVVQQTPAYNTTVYVGNLVPYCTQADL-IPLFQSIGYLS-EIRMQAD----RGFAF 271
Query: 207 INYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQA 264
+ + E + +I + GQ + RPI S+ DR A AA +P + A
Sbjct: 272 VKLDTHEHAAMAIVQLQGQMVHGRPIKCSWG------KDRADGTAAAQPAAMSPTTTA 323
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 43/202 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+++YVG L+ V+E ++E F GPVV++ + +D +T+ GY ++ F DA +AI
Sbjct: 32 SSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAID 91
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
++N + GKPIRV ++ + VG NIFI NLD +D K L DTF+ FG I
Sbjct: 92 VLNFQVINGKPIRVLYSQRDPAVRRSGVG-NIFIKNLDKAIDNKALLDTFAQFGTITSAK 150
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
M+ GNSKG+ F+ + +
Sbjct: 151 VAMD----------------------------------------SAGNSKGYGFVQFETA 170
Query: 213 EASDASIDAMHGQYLCNRPISV 234
EA+ A+ID ++G L ++ + V
Sbjct: 171 EAAQAAIDNVNGMELNDKQVYV 192
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/280 (19%), Positives = 113/280 (40%), Gaps = 76/280 (27%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + + F Q G + + + D + +GYGF++F E A A
Sbjct: 118 GVGNIFIKNLDKAIDNKALLDTFAQFGTITSAKVAMDSAGNS-KGYGFVQFETAEAAQAA 176
Query: 93 IKIMNMIKLYGKPI-------RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
I +N ++L K + R ++++ + + N+++ NL + ++ L + F+
Sbjct: 177 IDNVNGMELNDKQVYVGPFQRRADRSTQGEAKFN---NVYVKNLSENLSDEKLREKFAEH 233
Query: 146 G--------------------VILQTPK----IMNMIKLYGKP------IRVNKASSHQK 175
G V ++P+ + + Y + R K + +
Sbjct: 234 GAVTSCVIMKDEEGKSKGFGFVCFESPEGAASAVENLDGYTEDEKTWVVCRAQKKAEREA 293
Query: 176 NLD--------------VGANIFIGNLDP--------------------EIMRDPDTGNS 201
L GAN++I NL+ +MRD +G S
Sbjct: 294 ELKAKFEAERRERMEKMAGANLYIKNLEEGTDDEKLRELFNEFGTITSCRVMRDA-SGAS 352
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
+G AF+ ++S + + ++ M+G+ + +P+ V+ A +K+
Sbjct: 353 RGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQRKE 392
>gi|50547639|ref|XP_501289.1| YALI0C00539p [Yarrowia lipolytica]
gi|74689742|sp|Q6CDH3.1|PABP_YARLI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49647156|emb|CAG81584.1| YALI0C00539p [Yarrowia lipolytica CLIB122]
Length = 629
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 42/220 (19%)
Query: 17 QSLSQTKLEGGGESGDGD-ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTH 75
++ +++ E G + GD A++YVG LD V+E +++E+F GPV +V + +D +T+
Sbjct: 27 EAKTESSEEKGSKEDQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRS 86
Query: 76 QGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVD 134
GY ++ F + D A++ +N + +P R+ + GA NI+I NLDP +D
Sbjct: 87 LGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAID 146
Query: 135 EKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMR 194
K L+DTFSAFG IL +I
Sbjct: 147 NKALHDTFSAFGQILSC---------------------------------------KIAT 167
Query: 195 DPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234
D + GNS+GF F++Y S E+++++I ++G L ++ + V
Sbjct: 168 D-EFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFV 206
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/281 (19%), Positives = 106/281 (37%), Gaps = 71/281 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G IY+ LD + + + F G +++ + D + +G+GF+ + E A+ A
Sbjct: 132 GAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNS-RGFGFVHYESAESAESA 190
Query: 93 IKIMNMIKLYGKPIRV-------NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
I+ +N + L K + V ++ S ++ + N+FI NL E+ E + + F
Sbjct: 191 IQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELVNKF 250
Query: 146 G---------------------------VILQTPKIMNMIKLYGKPIRVNKASSHQKNLD 178
G V ++ ++ + G + +A + D
Sbjct: 251 GETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERAD 310
Query: 179 -----------------VGANIFIGNLDPEIMRDP-------------------DTGNSK 202
G N++I NLD I D + G SK
Sbjct: 311 ELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKSK 370
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
GF F+ Y+S E + ++ M+ + + +P+ V A +KD +
Sbjct: 371 GFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVLAQRKDVR 411
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 124/268 (46%), Gaps = 61/268 (22%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED---A 89
++++YVG L+ V+E ++ELF GPV ++ + +D VT+ GY ++ + D A
Sbjct: 21 ANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAA 80
Query: 90 DYAIKIMNMIKLYGKPIRVNKASSHQ----KNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
D A++ +N + GKP+R+ SH+ + VG NIFI NLD +D K L+DTFSAF
Sbjct: 81 DRAMETLNYHVVNGKPMRI--MWSHRDPSARKSGVG-NIFIKNLDKTIDAKALHDTFSAF 137
Query: 146 GVILQTP---------------------------KIMNMIKLYGKPIRV---NKASSHQK 175
G IL + +N K+ GK + V K + +
Sbjct: 138 GKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKKIEGKIVYVAPFQKRADRPR 197
Query: 176 NLDVGANIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEAS 215
+ N+F+ NL +I M+D D G SKGF FIN+ E++
Sbjct: 198 ARTLYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKD-DKGGSKGFGFINFKDAESA 256
Query: 216 DASIDAMHGQYLCNRPISVSYAFKKDSK 243
++ ++ + + + + A KK +
Sbjct: 257 AKCVEYLNEREMSGKTLYAGRAQKKTER 284
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/339 (21%), Positives = 129/339 (38%), Gaps = 83/339 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + + F G +++ + D +GYGF+ F + AD A
Sbjct: 112 GVGNIFIKNLDKTIDAKALHDTFSAFGKILSCKVATD-ANGVSKGYGFVHFEDQAAADRA 170
Query: 93 IKIMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFG--- 146
I+ +N K+ GK + V K + + + N+F+ NL ++ + L + G
Sbjct: 171 IQTVNQKKIEGKIVYVAPFQKRADRPRARTLYTNVFVKNLPADIGDDELGKMATEHGEIT 230
Query: 147 --VILQTPK----------------------IMNMIKLYGKPI---RVNKASSHQKNLDV 179
V+++ K +N ++ GK + R K + + L
Sbjct: 231 SAVVMKDDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQ 290
Query: 180 GA--------------NIFIGNLDPE---------------------IMRDPDTGNSKGF 204
A N+++ NL E +M+D +G SKGF
Sbjct: 291 KAEESKQERYLKYQSMNLYVKNLSDEEVDDDALRELFANSGTITSCKVMKD-GSGKSKGF 349
Query: 205 AFINYASF-EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F+ + S EA+ + M+G+ + +P+ V+ A +KD R + E + A+ +
Sbjct: 350 GFVCFTSHDEATRPPVTEMNGKMVKGKPLYVALAQRKDV---RRATQLEANMQARMGMGA 406
Query: 264 ADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPPSGLRA 302
R PP P+ P M P P G+ A
Sbjct: 407 MSR---------PPNPMAGMSPYPGAMPFFAPGPGGMAA 436
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 103/217 (47%), Gaps = 45/217 (20%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG LD V + ++++F Q G VV+V + +D T+ GY ++ F DA A+++
Sbjct: 43 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEM 102
Query: 96 MNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+N + GKPIR+ N+ S +K+ ANIFI NLD +D K LYDTFSAFG IL
Sbjct: 103 LNFTPVNGKPIRIMYSNRDPSSRKS--GAANIFIKNLDKSIDNKALYDTFSAFGNILSCK 160
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
M +G SKG+ F+ Y
Sbjct: 161 VATEM----------------------------------------SGESKGYGFVQYEQD 180
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
E++ +I+ ++G L ++ + V +K + + GS
Sbjct: 181 ESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGS 217
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 133/332 (40%), Gaps = 82/332 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + +++ F G +++ + + ++ +GYGF+++ +E A A
Sbjct: 128 GAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVATE-MSGESKGYGFVQYEQDESAQNA 186
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA-----NIFIGNLDPEVDEKLLYDTFSAFG- 146
I +N + L K + V Q+ +V N+++ NL E L + F FG
Sbjct: 187 INELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTEDNLKELFGNFGP 246
Query: 147 -------------------VILQTP--KIMNMIKLYGKPI--------RVNKASSHQKNL 177
V + P + + L GK R K S + L
Sbjct: 247 ITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLNGKKFDDKELYVGRAQKKSEREMQL 306
Query: 178 --------------DVGANIFIGNLD---------------------PEIMRDPDTGNSK 202
+ G N+++ NLD ++MRD + G +K
Sbjct: 307 KESFEKSNKETADRNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRDSN-GVNK 365
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL-------L 255
G F+ + S E + ++ AM+G+ + ++P+ V+ A +K+ + R + ++ +
Sbjct: 366 GSGFVAFKSSEDATRALVAMNGKMVGSKPLYVALAQRKEERRARLQAQFSQMRPVMPPPV 425
Query: 256 AAQNPLSQADRP---HQLFADAPPPAPLPPPP 284
A + P+ P QLF PPPA + P P
Sbjct: 426 APRMPMYPPGVPGMGQQLFYGQPPPAFVNPQP 457
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 124/260 (47%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L++ F GPV+++ + +D+VT+ GY ++ F+ DA A+
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K LY+ FSAFG IL +
Sbjct: 128 TMNFDMIKGKSIRLMWSQRDAYLRRSGIG-NVFIKNLDKSIDNKTLYEHFSAFGKILSSK 186
Query: 153 KI--------------------------MNMIKLYGKPI-------RVNKASSHQKNLDV 179
+ MN L G + R ++ + +
Sbjct: 187 VMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 246
Query: 180 GANIFI----GNLDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
NI+I G++D E ++D +G SKGF F+++ S EA+ +++
Sbjct: 247 FTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 306
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ + + I V A KK
Sbjct: 307 EMNGRDINGQLIFVGRAQKK 326
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 59/220 (26%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
IY+ + + + ++F + G ++V + D ++ +G+GF+ F E A A++
Sbjct: 248 TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKS-KGFGFVSFDSHEAAKKAVE 306
Query: 95 IMNMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKL 137
MN + G+ I R K Q L G ++I NLD +D++
Sbjct: 307 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 366
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + FS+FG I + K+M +
Sbjct: 367 LRNEFSSFGSISRV-KVMQ----------------------------------------E 385
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
G SKGF I ++S E + ++ M+G+ L ++P+S++ A
Sbjct: 386 EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 425
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 122/279 (43%), Gaps = 62/279 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + ED + A++
Sbjct: 47 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALE 106
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 107 ELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKV 166
Query: 153 --------------------------KIMNMIKLYGKPI----------RVNKASSHQKN 176
K +N + L K + R++K + N
Sbjct: 167 AQDEHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKAN 226
Query: 177 LDVGANIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDA 217
NI++ N+D ++ D D G S+GF F+NY EA+
Sbjct: 227 F---TNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASV 283
Query: 218 SIDAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERL 254
+++ ++ + + V A KK + + R A RL
Sbjct: 284 AVETLNDTEFHGQKLYVGRAQKKHEREEELRKQYEAARL 322
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 125/279 (44%), Gaps = 52/279 (18%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV +D V++ +LF + G + + + +D ++ +G+GF+ ++ E A A++ +
Sbjct: 230 IYVKNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKS-RGFGFVNYIKHEAASVAVETL 288
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N + +G+ + V +A H++ ++ G N++I NL+ +VD++ L
Sbjct: 289 NDTEFHGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLR 348
Query: 140 DTFSAFGVILQTPKIMN-----------------------MIKLYGKPIRVNKASSHQKN 176
D F+ FG I + K+M K + + +++
Sbjct: 349 DMFTPFGTIT-SAKVMRDAMPADRSDSPSDKKEEEKDGKEESKETEGEAKEDSTDDKKED 407
Query: 177 LDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSY 236
G + I + +I+ G SKGF F+ +++ + + ++ M+ + L +P+ V+
Sbjct: 408 TKAGDKVTIKG-EKKIL-----GKSKGFGFVCFSNPDEATKAVTEMNQKMLEGKPLYVAL 461
Query: 237 AFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFADAP 275
A +KD + ++ E + A+N L + Q F P
Sbjct: 462 AQRKDVRKNQ----LEATIQARNQLRMQQQQQQQFGGIP 496
>gi|431894424|gb|ELK04224.1| Polyadenylate-binding protein 1-like protein [Pteropus alecto]
Length = 512
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 123/266 (46%), Gaps = 62/266 (23%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRVNKASSH--QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ + + VG NIFI NL+ +D K LYDTFS FG IL
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNKASSHQ-KNLDVGA---- 181
+ MN + L + + V S Q + ++GA
Sbjct: 130 VVCDDHGSRGFGFVHFETHEAAQLAISTMNGMLLNDRKVFVGHFKSRQEREAELGARAME 189
Query: 182 --NIFIGNLDPE-------------------------IMRDPDTGNSKGFAFINYASFEA 214
NI++ NL + +MRD D+G+S+GF F+N+ E
Sbjct: 190 FTNIYVKNLQVDMDEWGLQELFSQFDWSSPGKMLSVKVMRD-DSGHSRGFGFVNFEKHEE 248
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKK 240
+ ++ M+G+ + R + V A K+
Sbjct: 249 AQKAVMDMNGKEVRGRLLYVGRAQKR 274
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 117/292 (40%), Gaps = 78/292 (26%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G I++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQ-KNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI MN + L + + V S Q + ++GA NI++ NL ++DE L +
Sbjct: 150 AAQLAISTMNGMLLNDRKVFVGHFKSRQEREAELGARAMEFTNIYVKNLQVDMDEWGLQE 209
Query: 141 TFSAF-----GVILQTPKI---------------------------MNMIKLYGKPIRVN 168
FS F G +L + MN ++ G+ + V
Sbjct: 210 LFSQFDWSSPGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRGRLLYVG 269
Query: 169 KASSHQKNLD-------------------VGANIFIGNLDPEI----MRD---------- 195
+A + + G N+++ NLD I +R
Sbjct: 270 RAQKRMERQNELKRKFEQMKQDRLNRYHVRGVNLYVKNLDDSINDEKLRKEFSPYGMITS 329
Query: 196 ----PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 AKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 381
>gi|397575959|gb|EJK49989.1| hypothetical protein THAOC_31088, partial [Thalassiosira oceanica]
Length = 690
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 109/224 (48%), Gaps = 42/224 (18%)
Query: 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMG 85
GG + A++YVG L +V+E L++E+F GPV ++ + +D VT+ GY ++ +
Sbjct: 4 GGAPNSFTSASLYVGDLLPEVNEGLLYEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQ 63
Query: 86 EEDADYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFS 143
DA+ A+ MN + GKP R+ ++ + VG NIF+ NL +D K LYDTFS
Sbjct: 64 AADAERALDSMNFTDIKGKPCRIMWSQRDPSVRRSGVG-NIFVKNLHEGIDNKQLYDTFS 122
Query: 144 AFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKG 203
FG IL +++ D +TG SKG
Sbjct: 123 LFGNILSC---------------------------------------KVVCDRETGLSKG 143
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRH 247
+ +++Y + EA+ ++ID + G + + + V ++D++ D+
Sbjct: 144 YGYVHYETNEAAASAIDKLDGMLIDGKEVQVGVFMRRDTRPDQE 187
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I+V L + + +++ F G +++ + DR T +GYG++ + E A A
Sbjct: 99 GVGNIFVKNLHEGIDNKQLYDTFSLFGNILSCKVVCDRETGLSKGYGYVHYETNEAAASA 158
Query: 93 IKIMNMIKLYGKPIRVN--KASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
I ++ + + GK ++V + + +V N+FI N+ E D+K L F+ FG I+
Sbjct: 159 IDKLDGMLIDGKEVQVGVFMRRDTRPDQEVYTNLFIKNMPYEWDDKRLEAEFAEFGEIV 217
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 39/123 (31%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVG 180
G N+++ NLD V + +L D F G I
Sbjct: 351 GVNLYVKNLDDAVTDDMLRDEFGGMGTITSA----------------------------- 381
Query: 181 ANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
+IMRD T NS+GF F+ +++ E + +++ M G+ + +PI VS A ++
Sbjct: 382 ----------KIMRDAKTNNSRGFGFVCFSTPEDATRAVNEMSGKIVAGKPIYVSLAQRR 431
Query: 241 DSK 243
+ +
Sbjct: 432 EVR 434
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV LDD V++ ++ + F G + + + +D T +G+GF+ F EDA A+ M
Sbjct: 354 LYVKNLDDAVTDDMLRDEFGGMGTITSAKIMRDAKTNNSRGFGFVCFSTPEDATRAVNEM 413
Query: 97 NMIKLYGKPIRVNKASSHQ 115
+ + GKPI V+ A +
Sbjct: 414 SGKIVAGKPIYVSLAQRRE 432
>gi|409083337|gb|EKM83694.1| hypothetical protein AGABI1DRAFT_110331 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 444
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 108/215 (50%), Gaps = 45/215 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG--YGFIEFMGEEDADYA 92
A +YVG L +V+E ++ E+F +GPV +V + DR Q H G YGF+E+M A+ A
Sbjct: 16 AHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQ-HGGLNYGFVEYMDMRSAETA 74
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA---NIFIGNLDPEVDEKLLYDTFSAFGVIL 149
++ +N K++ IRVN A Q+N + + ++F+G+L PEV++ +L FSAFG +
Sbjct: 75 LQTLNGRKIFDTEIRVNWAYQGQQNKEDTSGHYHVFVGDLSPEVNDDVLAKAFSAFGTL- 133
Query: 150 QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINY 209
D +M D ++G S+G+ F+ +
Sbjct: 134 --------------------------------------SDARVMWDMNSGKSRGYGFLAF 155
Query: 210 ASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
++ +I M+G++L +R I V++A +K G
Sbjct: 156 RDKTDAEQAIATMNGEWLGSRAIRVNWANQKTQGG 190
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 97/238 (40%), Gaps = 17/238 (7%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E G ++VG L +V++ ++ + F G + + + D + +GYGF+ F + D
Sbjct: 101 EDTSGHYHVFVGDLSPEVNDDVLAKAFSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTD 160
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
A+ AI MN L + IRVN A+ + GA + P + G
Sbjct: 161 AEQAIATMNGEWLGSRAIRVNWANQKTQG---GAPAVQQSPRPAGSTGGAPAPINFQGGP 217
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIF--IGNLDPEIMRDPDTGNSKGFAF 206
L ++ Y + V + D+ +F IG L EI D +GFAF
Sbjct: 218 LSYESVVQQTPAYNTTVYVGNLVPYCTQADL-IPLFQSIGYLS-EIRMQAD----RGFAF 271
Query: 207 INYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQA 264
+ + E + +I + GQ + RPI S+ DR A AA +P + A
Sbjct: 272 VKLDTHEHAAMAIVQLQGQMVHGRPIKCSWG------KDRADGTAAAQPAAMSPTTTA 323
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 126/279 (45%), Gaps = 56/279 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 55 ASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALE 114
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 115 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 174
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 175 AQDENGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 234
Query: 182 --NIFIGNLDPEIMRD-------------------PDTGNSKGFAFINYASFEASDASID 220
N+++ N+ PE+ D G S+GF F+N+ + EA+ +++
Sbjct: 235 FTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRGFGFVNFTTHEAAAKAVE 294
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
++ + L + + V A KK + + R A R+ A
Sbjct: 295 ELNNKDLHGQELYVGRAQKKHEREEELRKSYEAARIEKA 333
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 70/137 (51%), Gaps = 19/137 (13%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+YV + +V++ ELF + G V + + +++ ++ +G+GF+ F E A A++
Sbjct: 237 NVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKS-RGFGFVNFTTHEAAAKAVEE 295
Query: 96 MNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N L+G+ + V +A H++ ++ G N++I NLD +VD+ L
Sbjct: 296 LNNKDLHGQELYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDDKL 355
Query: 139 YDTFSAFGVILQTPKIM 155
F+ FG I + K+M
Sbjct: 356 RIMFAEFGPIT-SAKVM 371
>gi|6137350|pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137351|pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137352|pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137353|pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137354|pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137355|pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137356|pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137357|pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 107/221 (48%), Gaps = 45/221 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
+ D SKG+ F+++ +
Sbjct: 130 VVC-----------------------------------------DENGSKGYGFVHFETQ 148
Query: 213 EASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
EA++ +I+ M+G L +R + V + +K+ + + A E
Sbjct: 149 EAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ F +E A+ A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA 122
I+ MN + L + + V + S ++ ++GA
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 118/269 (43%), Gaps = 54/269 (20%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G S A++YVG LD V+++ + +LF Q VV++ + +D T GYG++ + E
Sbjct: 162 GPSRFASASLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSLGYGYVNYTDLE 221
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFG 146
DA A+ ++N L GKPIR+ + G NIFI NLD +D K L+DTFSAFG
Sbjct: 222 DAARALDVLNFTPLNGKPIRIMYSHRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFG 281
Query: 147 VILQTP--------------------------------KIMNMIKLYGKPIRVNKASSHQ 174
IL ++N +++ P +
Sbjct: 282 NILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQEREST 341
Query: 175 KNLDVGANIFIGNLDP--------------------EIMRDPDTGNSKGFAFINYASFEA 214
N + N+F+ N+ +MRD D G SK F F+N+ + +
Sbjct: 342 INKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGD-GKSKCFGFVNFENVDD 400
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ S++A++GQ ++ V A KK +
Sbjct: 401 AAMSVEALNGQKFDDKEWYVGKAQKKSER 429
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/309 (20%), Positives = 120/309 (38%), Gaps = 100/309 (32%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED------ 88
++YVG L+ V+++ +++LF Q G VV+V + +D T+ GYG++ + +D
Sbjct: 30 TSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDEKEKET 89
Query: 89 ------------ADYAI------------------------KIMNMIKLYGKPIRVN--- 109
++YAI + +N +++ G+ V
Sbjct: 90 IYEGFCVFCLIPSNYAIFFVLGFSYIHKKRRGKERGGELQKRELNFLRVGGEMAEVQDHE 149
Query: 110 ---KASSHQKNLD----VGANIFIGNLDPEVDEKLLYDTFSAFGVIL------------- 149
++ + N+ A++++G+LD V + L+D FS ++
Sbjct: 150 GLLSGTNDEPNIGPSRFASASLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRS 209
Query: 150 ---------------QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEI- 192
+ ++N L GKPIR+ + G NIFI NLD I
Sbjct: 210 LGYGYVNYTDLEDAARALDVLNFTPLNGKPIRIMYSHRDPSIRKSGTGNIFIKNLDKGID 269
Query: 193 ------------------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234
+ +G SKG F+ + S EA+ +ID ++G L ++ + V
Sbjct: 270 HKALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFV 329
Query: 235 SYAFKKDSK 243
+K +
Sbjct: 330 GPFVRKQER 338
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 58/227 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++V + + ++E + +F + GP+ +V + +D ++ + +GF+ F +DA +++ +
Sbjct: 350 VFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKS-KCFGFVNFENVDDAAMSVEAL 408
Query: 97 NMIKLYGKPIRVNKA-----------SSHQKNLD------VGANIFIGNLDPEVDEKLLY 139
N K K V KA S ++N+ GAN++I NLD + + L
Sbjct: 409 NGQKFDDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGANLYIKNLDDSIGDDKLK 468
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ F+ FG I ++MRDP+ G
Sbjct: 469 ELFAQFGTITSC---------------------------------------KVMRDPN-G 488
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
S+G F+ ++S E + ++ M+ + + ++P+ V+ A +K+ + R
Sbjct: 489 LSRGSGFVAFSSPEEASRALAEMNSKMVVSKPLYVALAQRKEDRRAR 535
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A +Y+ LDD + + + ELF Q G + + + +D +G GF+ F E+A A+
Sbjct: 451 ANLYIKNLDDSIGDDKLKELFAQFGTITSCKVMRD-PNGLSRGSGFVAFSSPEEASRALA 509
Query: 95 IMNMIKLYGKPIRVNKASSHQ 115
MN + KP+ V A +
Sbjct: 510 EMNSKMVVSKPLYVALAQRKE 530
>gi|297829972|ref|XP_002882868.1| hypothetical protein ARALYDRAFT_478823 [Arabidopsis lyrata subsp.
lyrata]
gi|297328708|gb|EFH59127.1| hypothetical protein ARALYDRAFT_478823 [Arabidopsis lyrata subsp.
lyrata]
Length = 430
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 111/242 (45%), Gaps = 45/242 (18%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG + +V+E L+ E+F +GPV + + + + YGF+ + A AI
Sbjct: 62 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKL----IRKDKSSYGFVHYFDRRSAALAILS 117
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N L+G+PI+VN A + + D + NIF+G+L PEV + LY +FS
Sbjct: 118 LNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFS---------- 167
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+F D +M D TG S+GF F+++ + +
Sbjct: 168 -----------------------------VFSSCSDARVMWDQKTGRSRGFGFVSFRNQQ 198
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
+ +I+ M+G++L +R I ++A K + GD S+ + + S D L +
Sbjct: 199 DAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEE 258
Query: 274 AP 275
AP
Sbjct: 259 AP 260
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 88/220 (40%), Gaps = 42/220 (19%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
I+VG L +V++ +++ F + + D+ T +G+GF+ F ++DA AI M
Sbjct: 148 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 207
Query: 97 NMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMN 156
N L + IR N A+ K G D+KL D S V L T +
Sbjct: 208 NGKWLSSRQIRCNWAT---KGATSG------------DDKLSSDGKSV--VELTTGSSED 250
Query: 157 MIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPE----------------IMRDPDTGN 200
GK +A + +++GNL PE ++ +
Sbjct: 251 -----GKETLNEEAPENNSQF---TTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQR 302
Query: 201 SKGFAFINYASFEASDASIDAMHGQ-YLCNRPISVSYAFK 239
KGF F+ Y + + +I + Q YL NR I S+ K
Sbjct: 303 DKGFGFVRYNTHPEAALAIQMGNTQPYLFNRQIKCSWGNK 342
>gi|15221031|ref|NP_175810.1| oligouridylate-binding protein 1A [Arabidopsis thaliana]
gi|4587549|gb|AAD25780.1|AC006577_16 Similar to gb|U55861 RNA binding protein nucleolysin (TIAR) from
Mus musculus and contains several PF|00076 RNA
recognition motif domains. ESTs gb|T21032 and gb|T44127
come from this gene [Arabidopsis thaliana]
gi|13194792|gb|AAK15558.1|AF348587_1 putative oligouridylate binding protein [Arabidopsis thaliana]
gi|13605627|gb|AAK32807.1|AF361639_1 At1g54080/F15I1_16 [Arabidopsis thaliana]
gi|22137190|gb|AAM91440.1| At1g54080/F15I1_16 [Arabidopsis thaliana]
gi|332194924|gb|AEE33045.1| oligouridylate-binding protein 1A [Arabidopsis thaliana]
Length = 426
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 113/234 (48%), Gaps = 46/234 (19%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++Y G + +V+E L+ E+F +GP+ + + + + YGF+ + A AI
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKL----IRKDKSSYGFVHYFDRRCASMAIMT 119
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N ++G+P++VN A + + D + NIF+G+L PEV + L+D+FSAF
Sbjct: 120 LNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAF-------- 171
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
N S D +M D TG S+GF F+++ + +
Sbjct: 172 --------------NSCS-----------------DARVMWDQKTGRSRGFGFVSFRNQQ 200
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKG-DRHGSAAERLLAAQNPLSQADR 266
+ +I+ M+G+++ +R I ++A K + G D+H S + ++ N S+ R
Sbjct: 201 DAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGR 254
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 42/231 (18%)
Query: 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMG 85
G E I+VG L +V++ +++ F + + D+ T +G+GF+ F
Sbjct: 139 GQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRN 198
Query: 86 EEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
++DA AI MN + + IR N A+ GA G D K + +
Sbjct: 199 QQDAQTAINEMNGKWVSSRQIRCNWATK-------GAT--FGEDKHSSDGKSVVE----- 244
Query: 146 GVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPE-------------- 191
+ N G+ + A + +++GNL PE
Sbjct: 245 --------LTNGSSEDGRELSNEDAPENNPQF---TTVYVGNLSPEVTQLDLHRLFYTLG 293
Query: 192 --IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQ-YLCNRPISVSYAFK 239
++ + KGF F+ Y + + + +I + Q +L +R I S+ K
Sbjct: 294 AGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNK 344
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 43/220 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K L+DTFSAFG IL
Sbjct: 62 TMNFDIIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALFDTFSAFGNILSC- 119
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D +TG SKG+ F+++ +
Sbjct: 120 --------------------------------------KVAQD-ETGASKGYGFVHFETE 140
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
EA++ SI+ ++G L + + V + + G A+
Sbjct: 141 EAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAK 180
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 121/311 (38%), Gaps = 79/311 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GE +YV + S+ ++ ++F + G + + H + +G+GF+ F +
Sbjct: 176 GEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPD 234
Query: 88 DADYAIKIMNMIKLY-GKPI---RVNKASSHQKNLDV--------------GANIFIGNL 129
A+ A +N +L GKP+ R K + QK L G N+++ NL
Sbjct: 235 AAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNL 294
Query: 130 DPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLD 189
D +D++ L F+ FG I A + +
Sbjct: 295 DDTIDDERLRKEFAPFGTI------------------------------TSAKVML---- 320
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
+ G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + S
Sbjct: 321 -------EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTS 373
Query: 250 AAERLLAAQNPLSQADRPHQ------LFADAPPPAP----------LPPPPPPINIMGLP 293
+ +A+ + Q + Q F + PPAP + P P N P
Sbjct: 374 QYMQRMASMR-MQQMGQIFQPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWN--AQP 430
Query: 294 PPPPSGLRASA 304
P PS ASA
Sbjct: 431 PVRPSTQAASA 441
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 123/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L +V+E L+++ F GPV+++ + +D VTQ GY ++ F+ DA A+
Sbjct: 10 ASLYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHLADAQKALD 69
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NL +D K LY+ FSAFG IL +
Sbjct: 70 TMNFDMIKGKSIRLMWSQRDAYLRKSGIG-NVFIKNLHKSIDNKTLYEHFSAFGKILSSK 128
Query: 153 -------------------------------KIMNMIKLYGKPI--RVNKASSHQKNLDV 179
++ +L+ P R ++ + Q +
Sbjct: 129 VMSDDAGSRGYAFVHFQSQTAADRAIEAMNGALLKGCRLFVGPFKNRKDRQAELQNKANE 188
Query: 180 GANIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D G SKGF F+++ S EA+ ++
Sbjct: 189 FTNVYIKNFGDDMDDERLKEIFSHFGKILSVKVMTDS-RGRSKGFGFVSFDSHEAAQRAV 247
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ L +P+ V A KK
Sbjct: 248 EIMNGKDLSGQPLFVGRAQKK 268
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 59/220 (26%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+Y+ D + + + E+F G +++V + D ++ +G+GF+ F E A A++
Sbjct: 190 TNVYIKNFGDDMDDERLKEIFSHFGKILSVKVMTDSRGRS-KGFGFVSFDSHEAAQRAVE 248
Query: 95 IMNMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKL 137
IMN L G+P+ R K + Q L + G ++I NLD +D++
Sbjct: 249 IMNGKDLSGQPLFVGRAQKKAERQAELKLMFEQMKQERYRRFRGVKLYIKNLDDSIDDER 308
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L FS+FG I + K+M +
Sbjct: 309 LRREFSSFGSISRV-KVM----------------------------------------KE 327
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
G SKGF I ++S E + ++ M+G+ L ++ ++++ A
Sbjct: 328 EGRSKGFGLICFSSPEEATKAMVEMNGRILGSKSLNIALA 367
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 105/215 (48%), Gaps = 42/215 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG L+ VSE ++E+F Q G VV++ + +D +T+ GY ++ + +DA A++
Sbjct: 24 TSLYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATRALE 83
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
++N + GKPIR+ + G ANIFI NLD +D K L+DTF+AFG IL
Sbjct: 84 LLNFNAVNGKPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGTILSC-- 141
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ DP +G SKG+ F+ + E
Sbjct: 142 -------------------------------------KVATDP-SGQSKGYGFVQFEQEE 163
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
++ +I+ ++G L ++ + V F + + D+ G
Sbjct: 164 SAQTAIEKVNGMLLNDKQVFVG-PFVRRQERDQSG 197
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/359 (22%), Positives = 136/359 (37%), Gaps = 96/359 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + + + F G +++ + D Q+ +GYGF++F EE A A
Sbjct: 110 GTANIFIKNLDKSIDNKALHDTFAAFGTILSCKVATDPSGQS-KGYGFVQFEQEESAQTA 168
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA-----NIFIGNLDPEVDEKLLYDTFSAFG- 146
I+ +N + L K + V Q+ G N+++ NL + L F A+G
Sbjct: 169 IEKVNGMLLNDKQVFVGPFVRRQERDQSGVVSKFNNVYVKNLADSTTDDELKKVFEAYGP 228
Query: 147 ----VILQ----TPKIMNMIK-------------LYGKPI--------RVNKASSHQKNL 177
V+++ K + L GK R K S + L
Sbjct: 229 ISSAVVMRDNEGKSKCFGFVNFEHADDAAKAVEALNGKKFDEKEWYVGRAQKKSEREAEL 288
Query: 178 DV--------------GANIFIGNLDP--------------------EIMRDPDTGNSKG 203
G N+++ NLD ++MRDP G S+G
Sbjct: 289 RAKFEQERKERIEKYQGVNLYLKNLDDTIDDEKLREIFSEYGTIVSCKVMRDPQ-GQSRG 347
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA-AERL-------- 254
F+ ++S + + ++ M+G+ + ++P+ V+ A +K+ + +R +A A+R
Sbjct: 348 SGFVAFSSPDEATRAVTEMNGKMVGSKPLYVALAQRKEERRNRLQAAFAQRTPVGPAVPT 407
Query: 255 -LAAQNPLSQADRPHQLFADAPPPAPLPPPPPPI---------------NIMGLPPPPP 297
L +P P + PP P+P P N MG P PP
Sbjct: 408 SLPMYHPAGPGMGPGMSYYGQHPPGPIPLQPAAFGYQPQLIRPGGAQFPNYMGFPNVPP 466
>gi|392571669|gb|EIW64841.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 437
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 108/211 (51%), Gaps = 45/211 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG--YGFIEFMGEEDADYA 92
A +YVG L +V+E ++ E+F +GPV +V + DR Q H G YGF+E+M A+ A
Sbjct: 16 AHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQ-HGGLNYGFVEYMDMRAAETA 74
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGAN---IFIGNLDPEVDEKLLYDTFSAFGVIL 149
++ +N K++ IRVN A Q+N + +N +F+G+L PEV++++L FSAFG +
Sbjct: 75 LQTLNGRKIFDTEIRVNWAYQGQQNKEDTSNHYHVFVGDLSPEVNDEVLGKAFSAFGTL- 133
Query: 150 QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINY 209
D +M D ++G S+G+ F+ +
Sbjct: 134 --------------------------------------SDARVMWDMNSGKSRGYGFLAF 155
Query: 210 ASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
++ +I M+G++L +R I V++A +K
Sbjct: 156 RDKTDAEQAIATMNGEWLGSRAIRVNWANQK 186
>gi|400260922|pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
gi|400260925|pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 107/221 (48%), Gaps = 45/221 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 16 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 75
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 76 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 134
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
+ D SKG+ F+++ +
Sbjct: 135 VVC-----------------------------------------DENGSKGYGFVHFETQ 153
Query: 213 EASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
EA++ +I+ M+G L +R + V + +K+ + + A E
Sbjct: 154 EAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 194
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ F +E A+ A
Sbjct: 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 159
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA 122
I+ MN + L + + V + S ++ ++GA
Sbjct: 160 IEKMNGMLLNDRKVFVGRFKSRKEREAELGA 190
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 109/220 (49%), Gaps = 43/220 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A++
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALE 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTF+AFG IL
Sbjct: 71 GMNFDIIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKTIDNKAMYDTFTAFGNILSC- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D +TG SKG+ F+++ +
Sbjct: 129 --------------------------------------KVAQD-ETGASKGYGFVHFETE 149
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
EA++ SI+ ++G L + + V + + G A+
Sbjct: 150 EAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAK 189
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 96/234 (41%), Gaps = 60/234 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GE +YV + S+ ++ E+F + G + + H + + +G+GF+ F +
Sbjct: 185 GEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITS-HKVMYKEDGSSRGFGFVAFEDPD 243
Query: 88 DADYAIKIMNMIKLY-GKPI---RVNKASSHQKNLDV--------------GANIFIGNL 129
A+ A +N +L GKP+ R K + QK L G N+++ NL
Sbjct: 244 AAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNL 303
Query: 130 DPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLD 189
D +D++ L F+ FG I A + +
Sbjct: 304 DDTIDDERLRKEFAPFGTI------------------------------TSAKVML---- 329
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 -------EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 376
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 103/211 (48%), Gaps = 42/211 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + +D + A++
Sbjct: 64 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTQDGEKALE 123
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 124 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC-- 181
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ +D + GNSKG+ F++Y + E
Sbjct: 182 -------------------------------------KVAQD-ENGNSKGYGFVHYETDE 203
Query: 214 ASDASIDAMHGQYLCNRPISVSYAF-KKDSK 243
A+ +I ++G L + + V Y KKD +
Sbjct: 204 AAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQ 234
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 128/292 (43%), Gaps = 39/292 (13%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV ++ +V+E ELF + G V + + +D ++ +G+GF+ F A A++ +
Sbjct: 247 VYVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKS-RGFGFVNFTTHASAAKAVEEL 305
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N + G+ + V +A H++ ++ G N++I NL +VD+ L
Sbjct: 306 NGKEFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDVDDDKLR 365
Query: 140 DTFSAFGVILQTPKIMNMI------KLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIM 193
FS FG I + K+M G +K + + + + ++
Sbjct: 366 QMFSEFGPIT-SAKVMRDAPPEPPAGSEGDKEGKDKENKKESEKEGEGEAAEKKTEKKVE 424
Query: 194 RDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA--A 251
R G SKGF F+ +++ + + ++ M+ + + +P+ V+ A +KD + + ++ A
Sbjct: 425 RK--LGKSKGFGFVCFSNPDDATKAVAEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQA 482
Query: 252 ERLLAAQNPLSQADRPHQ------LFADAPPPAPLPPP----PPPINIMGLP 293
L Q +QA P Q +A P LPP P P +G+P
Sbjct: 483 RNQLRMQQAAAQAGLPQQYMQAPVYYAPGQQPGFLPPGGRGMPFPQGGIGMP 534
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 127/265 (47%), Gaps = 57/265 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E ++E F +GPV+++ + +D VT+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + KPIR+ ++ + VG N+FI NLD ++D K +YDTFSAFG IL
Sbjct: 62 TMNFDLIRNKPIRIMWSQRDPSLRRSGVG-NVFIKNLDRQIDNKAIYDTFSAFGNILSCK 120
Query: 153 ---------------------------KIMNMIKLYGKPIRVNK---ASSHQKNLDVGA- 181
+ +N + L GK + V K +K L A
Sbjct: 121 VALDEKGNSKGYGFVHFETEEAANTSIEKVNGMLLNGKKVYVGKFIPRKEREKELGEKAK 180
Query: 182 ---NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASI 219
N+++ N D E ++D + G SKGF F+ + + EA++A++
Sbjct: 181 LFTNVYVKNFTEEFDDEKLKDFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAV 240
Query: 220 DAMHGQYLCN-RPISVSYAFKKDSK 243
A++G+ + + + V+ A KK +
Sbjct: 241 QALNGKDMGEGKSLYVARAQKKAER 265
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 118/284 (41%), Gaps = 76/284 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD ++ +++ F G +++ + D + +GYGF+ F EE A+ +
Sbjct: 88 GVGNVFIKNLDRQIDNKAIYDTFSAFGNILSCKVALDEKGNS-KGYGFVHFETEEAANTS 146
Query: 93 IKIMNMIKLYGKPIRVNK---ASSHQKNLDVGA----NIFIGNLDPEVDEKLLYDTFSAF 145
I+ +N + L GK + V K +K L A N+++ N E D++ L D F +
Sbjct: 147 IEKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEEFDDEKLKDFFEPY 206
Query: 146 GVILQTPKIMN-----------------------MIKLYGKPI---------RVNKASSH 173
G I + K+M+ + L GK + R K +
Sbjct: 207 GKIT-SYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAER 265
Query: 174 QKNLD--------------VGANIFIGNLD--------------------PEIMRDPDTG 199
Q+ L G N+++ NLD ++M D + G
Sbjct: 266 QQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEE-G 324
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ + S + ++ ++G+ + ++P+ V+ A +K+ +
Sbjct: 325 RSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALAQRKEER 368
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 124/260 (47%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L++ F GPV+++ + +D+VT+ GY ++ F+ DA A+
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K LY+ FSAFG IL +
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIG-NVFIKNLDKSIDNKTLYEHFSAFGKILSSK 186
Query: 153 KI--------------------------MNMIKLYGKPI-------RVNKASSHQKNLDV 179
+ MN L G + R ++ + +
Sbjct: 187 VMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 246
Query: 180 GANIFI----GNLDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
NI+I G++D E ++D +G SKGF F+++ S EA+ +++
Sbjct: 247 FTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 306
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ + + I V A KK
Sbjct: 307 EMNGRDINGQLIFVGRAQKK 326
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 59/220 (26%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
IY+ + + + ++F + G ++V + D ++ +G+GF+ F E A A++
Sbjct: 248 TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKS-KGFGFVSFDSHEAAKKAVE 306
Query: 95 IMNMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKL 137
MN + G+ I R K Q L G ++I NLD +D++
Sbjct: 307 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERICGCQGVKLYIKNLDDTIDDEK 366
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + FS+FG I + K+M +
Sbjct: 367 LRNEFSSFGSISRV-KVMQ----------------------------------------E 385
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
G SKGF I ++S E + ++ M+G+ L ++P+S++ A
Sbjct: 386 EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 425
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 125/269 (46%), Gaps = 65/269 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED---A 89
++++YVG L+ V+E ++ELF GPV ++ + +D VT+ GY ++ + D A
Sbjct: 21 ANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAA 80
Query: 90 DYAIKIMNMIKLYGKPIRVNKASSHQ----KNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
D A++ +N + GKP+R+ SH+ + VG NIFI NLD +D K L+DTFSAF
Sbjct: 81 DRAMETLNYHVVNGKPMRI--MWSHRDPSARKSGVG-NIFIKNLDKTIDAKALHDTFSAF 137
Query: 146 GVILQTP---------------------------KIMNMIKLYGKPIRV----NKASSHQ 174
G IL + +N ++ GK + V +A Q
Sbjct: 138 GKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRADRPQ 197
Query: 175 KNLDVGANIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEA 214
DV N+F+ NL +I M+D D G SKGF FIN+ E+
Sbjct: 198 ---DVYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKD-DKGGSKGFGFINFKDAES 253
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ ++ ++ + + + + A KK +
Sbjct: 254 AAKCVEYLNEREMSGKTLYAGRAQKKTER 282
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 113/279 (40%), Gaps = 73/279 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + + F G +++ + D +GYGF+ F + AD A
Sbjct: 112 GVGNIFIKNLDKTIDAKALHDTFSAFGKILSCKVATD-ANGVSKGYGFVHFEDQAAADRA 170
Query: 93 IKIMNMIKLYGKPIRV----NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFG-- 146
I+ +N ++ GK + V +A Q DV N+F+ NL ++ + L + G
Sbjct: 171 IQTVNQKEIEGKIVYVGPFQKRADRPQ---DVYTNVFVKNLPADIGDDELGKMATEHGEI 227
Query: 147 ---VILQTPK----------------------IMNMIKLYGKPIRVNKA----------- 170
V+++ K +N ++ GK + +A
Sbjct: 228 TSAVVMKDDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLR 287
Query: 171 -----SSHQKNLDV-GANIFIGNLDPEI--------------------MRDPDTGNSKGF 204
S ++ L G N+++ NL E+ M+D +G SKGF
Sbjct: 288 QKAEESKQERYLKYQGMNLYVKNLSDEVDDDALRELFANSGTITSCKVMKD-GSGKSKGF 346
Query: 205 AFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F+ + S + + ++ M+G+ + +P+ V+ A +KD +
Sbjct: 347 GFVCFTSHDEATRAVTEMNGKMVKGKPLYVALAQRKDVR 385
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 128/261 (49%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L++ F GPV+++ + +D+VT+ GY ++ F+ DA A+
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K LY+ FSAFG IL +
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIG-NVFIKNLDKSIDNKTLYEHFSAFGKIL-SS 185
Query: 153 KIMN----------------------MIKLYGKPI------------RVNKASSHQKNLD 178
K+M+ + ++ GK + R ++ + +
Sbjct: 186 KVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKAS 245
Query: 179 VGANIFI----GNLDPEIMRD---------------PDTGNSKGFAFINYASFEASDASI 219
NI+I G++D E ++D +G SKGF F+++ S EA+ ++
Sbjct: 246 EFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAV 305
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 306 EEMNGRDINGQLIFVGRAQKK 326
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 59/220 (26%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
IY+ + + + ++F + G ++V + D ++ +G+GF+ F E A A++
Sbjct: 248 TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKS-KGFGFVSFDSHEAAKKAVE 306
Query: 95 IMNMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKL 137
MN + G+ I R K Q L G ++I NLD +D++
Sbjct: 307 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 366
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + FS+FG I + K+M +
Sbjct: 367 LRNEFSSFGSISRV-KVM----------------------------------------QE 385
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
G SKGF I ++S E + ++ M+G+ L ++P+S++ A
Sbjct: 386 EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 425
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 102/216 (47%), Gaps = 45/216 (20%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YVG LD V + ++++F Q G VV+V + +D T+ GY ++ F DA A++++
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEML 103
Query: 97 NMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
N + GKPIR+ N+ S +K+ ANIFI NLD +D K LYDTFSAFG IL
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSRKS--GAANIFIKNLDKSIDNKALYDTFSAFGNILSCKV 161
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
M +G SKG+ F+ Y E
Sbjct: 162 ATEM----------------------------------------SGESKGYGFVQYEQDE 181
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
++ +I+ ++G L ++ + V +K + + GS
Sbjct: 182 SAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGS 217
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 133/332 (40%), Gaps = 82/332 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + +++ F G +++ + + ++ +GYGF+++ +E A A
Sbjct: 128 GAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVATE-MSGESKGYGFVQYEQDESAQNA 186
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA-----NIFIGNLDPEVDEKLLYDTFSAFG- 146
I +N + L K + V Q+ +V N+++ NL E L + F FG
Sbjct: 187 INELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTEDNLKELFGNFGP 246
Query: 147 -------------------VILQTP--KIMNMIKLYGKPI--------RVNKASSHQKNL 177
V + P + + L GK R K S + L
Sbjct: 247 ITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLNGKKFDDKELYVGRAQKKSEREMQL 306
Query: 178 --------------DVGANIFIGNLD---------------------PEIMRDPDTGNSK 202
+ G N+++ NLD ++MRD + G +K
Sbjct: 307 KESFEKSNKETADRNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRDSN-GVNK 365
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL-------L 255
G F+ + S E + ++ AM+G+ + ++P+ V+ A +K+ + R + ++ +
Sbjct: 366 GSGFVAFKSSEDATRALVAMNGKMVGSKPLYVALAQRKEERRARLQAQFSQMRPVMPPPV 425
Query: 256 AAQNPLSQADRP---HQLFADAPPPAPLPPPP 284
A + P+ P QLF PPPA + P P
Sbjct: 426 APRMPMYPPGVPGMGQQLFYGQPPPAFVNPQP 457
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 119/263 (45%), Gaps = 54/263 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 64 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALE 123
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 124 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 183
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 184 AQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 243
Query: 182 --NIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
NI++ N+ E+ D G S+GF F+N+ + EA+ ++D
Sbjct: 244 FTNIYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVD 303
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
++G+ + + V A KK +
Sbjct: 304 DLNGKDFRGQDLYVGRAQKKHER 326
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 19/137 (13%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
IYV + ++V++ +LF G V + + +D+ ++ +G+GF+ F E A A+
Sbjct: 246 NIYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQEGKS-RGFGFVNFTTHEAAAKAVDD 304
Query: 96 MNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N G+ + V +A H++ ++ G N++I NLD EVD++ L
Sbjct: 305 LNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARMEKASKYQGVNLYIKNLDDEVDDEKL 364
Query: 139 YDTFSAFGVILQTPKIM 155
F+ FG I + K+M
Sbjct: 365 RQLFADFGPIT-SAKVM 380
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 128/261 (49%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L++ F GPV+++ + +D+VT+ GY ++ F+ DA A+
Sbjct: 67 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 126
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K LY+ FSAFG IL +
Sbjct: 127 TMNFDIIKGKSIRLMWSQRDAYLRRSGIG-NVFIKNLDKSIDNKTLYEHFSAFGKIL-SS 184
Query: 153 KIMN----------------------MIKLYGKPI------------RVNKASSHQKNLD 178
K+M+ + ++ GK + R ++ + +
Sbjct: 185 KVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKAS 244
Query: 179 VGANIFI----GNLDPEIMRD---------------PDTGNSKGFAFINYASFEASDASI 219
NI+I G++D E ++D +G SKGF F+++ S EA+ ++
Sbjct: 245 EFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAV 304
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 305 EEMNGRDINGQLIFVGRAQKK 325
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 59/220 (26%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
IY+ + + + ++F + G ++V + D ++ +G+GF+ F E A A++
Sbjct: 247 TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKS-KGFGFVSFDSHEAAKKAVE 305
Query: 95 IMNMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKL 137
MN + G+ I R K Q L G ++I NLD +D++
Sbjct: 306 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 365
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + FS+FG I + K+M +
Sbjct: 366 LRNEFSSFGSISRV-KVM----------------------------------------QE 384
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
G SKGF I ++S E + ++ M+G+ L ++P+S++ A
Sbjct: 385 EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 424
>gi|449281934|gb|EMC88877.1| Embryonic polyadenylate-binding protein [Columba livia]
Length = 646
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 103/219 (47%), Gaps = 44/219 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPVDAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG-NVFIKNLDDSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
+ D S+G+ F+++ +
Sbjct: 130 VVC-----------------------------------------DENGSRGYGFVHFETH 148
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA 251
EA+ +I+ M+G L +R + V + + + G+ A
Sbjct: 149 EAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEFGAKA 187
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/351 (21%), Positives = 135/351 (38%), Gaps = 104/351 (29%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G +++ LDD + +++ F G +++ + D +GYGF+ F E
Sbjct: 92 GLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGYGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI+ MN + L + + V S ++ + GA N++I N ++D+ L +
Sbjct: 150 AATRAIETMNGMLLNDRKVFVGHFKSRKEREAEFGAKAMEFTNVYIKNFGDDMDDDRLRE 209
Query: 141 TFSAFGVIL------------------------------------QTPKI-------MNM 157
FS FG L Q P + MN
Sbjct: 210 IFSKFGKTLSVKVMMDSTGRSKGFGFVNFEKHEEAQKARGSSCCAQRPPLRWQAVADMNG 269
Query: 158 IKLYGKPIRVNKASSHQKNLDV--------------------GANIFIGNLDPEIMRD-- 195
++ G+ + V +A QK L+ G N+++ NLD I D
Sbjct: 270 KEINGRIVYVGRA---QKRLERQSELKRKFEQIKQERVSRYQGVNLYVKNLDDGIDDDRL 326
Query: 196 ----------------PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239
+ G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +
Sbjct: 327 RKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQR 386
Query: 240 KDSK----GDRHGSAAERLLAAQNPLSQADRPHQLFADAPPPAPLPPPPPP 286
K+ + +++ L A PL + +P PP LPP P P
Sbjct: 387 KEERKAILTNQYMQRLATLRALPGPLLGSFQP-------PPGYFLPPIPQP 430
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 41/210 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG L+ V+++ +++LF Q G VV+V + +D ++ GYG++ + +DA A++
Sbjct: 25 TSLYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALE 84
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
++N L G PIRV + GA NIFI NLD +D K L+DTFSAFG IL
Sbjct: 85 MLNFTPLNGSPIRVMYSHRDPTIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-- 142
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ DP +G SKG+ F+ + S E
Sbjct: 143 -------------------------------------KVATDP-SGQSKGYGFVQFDSEE 164
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
A+ +I+ ++G L ++ + V +K +
Sbjct: 165 AAQKAIEKLNGMLLNDKQVYVGPFLRKQER 194
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 131/324 (40%), Gaps = 84/324 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + + F G +++ + D Q+ +GYGF++F EE A A
Sbjct: 111 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDPSGQS-KGYGFVQFDSEEAAQKA 169
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAFG 146
I+ +N + L K + V Q+ D N+F+ NL E+ L TF FG
Sbjct: 170 IEKLNGMLLNDKQVYVGPFLRKQER-DTATDKMRFNNVFVKNLSETTTEEDLNKTFGEFG 228
Query: 147 VIL---------------------------QTPKIMNMIKLYGKPIRVNKAS-SHQKNLD 178
I + + +N K+ K V KA +++ ++
Sbjct: 229 TITSIVVMRDGDGKSKCFGFVNFENAEDAAKAVEALNGKKIDDKEWFVGKAQKKYEREVE 288
Query: 179 V----------------GANIFIGNLDPEI--------------------MRDPDTGNSK 202
+ GAN++I NLD I MRDP+ G S+
Sbjct: 289 LKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKLKELFSPFGTITSCKVMRDPN-GISR 347
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLS 262
G F+ +++ E + ++ M+G+ + ++P+ V+ A +K+ + R L AQ S
Sbjct: 348 GSGFVAFSTPEEASRALLEMNGKIVVSKPLYVALAQRKEDRRAR--------LQAQ--FS 397
Query: 263 QADRPHQLFADAPPPAPLPPPPPP 286
Q RP + P P+ PP P
Sbjct: 398 QM-RPVAMAPSVGPRMPMYPPAGP 420
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 127/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L++ F GPV+++ + +D+VT++ GY ++ F+ DA A+
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQKALD 69
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K LY+ FSAFG IL +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIG-NVFIKNLDKSIDNKTLYEHFSAFGKILSSK 128
Query: 153 KI--------------------------MNMIKLYGKPIRVNKASS---HQKNLDVGA-- 181
+ MN L G + V + S + L A
Sbjct: 129 VMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRKDREAELRSKASE 188
Query: 182 --NIFI----GNLDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I G++D E ++D +G SKGF F+++ S EA+ +++
Sbjct: 189 FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 248
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ + + I V+ A KK
Sbjct: 249 EMNGRDINGQLIFVARAQKK 268
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 65/221 (29%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + ++F + G ++V + D ++ +G+GF+ F E A A++ M
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKS-KGFGFVSFDSHEAAKKAVEEM 250
Query: 97 NMIKLYGKPIRVNKASSHQKNLDVGA--------------------NIFIGNLDPEVDEK 136
N + G+ I V +A QK ++ A +++ NLD +D++
Sbjct: 251 NGRDINGQLIFVARA---QKKVERQAELKQMFEQLKKERIRGCQVVKLYVKNLDDTIDDE 307
Query: 137 LLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196
L + FS+FG I + K+M
Sbjct: 308 KLRNEFSSFGSISRV-KVM----------------------------------------Q 326
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
+ G SKGF I ++S E + ++ M+G+ L ++P+S++ A
Sbjct: 327 EEGQSKGFGLICFSSPEDALKAMTEMNGRILGSKPLSIALA 367
>gi|21593280|gb|AAM65229.1| oligouridylate binding protein, putative [Arabidopsis thaliana]
Length = 427
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 101/212 (47%), Gaps = 45/212 (21%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG + +V+E L+ E+F +GPV + + + + YGF+ + A AI
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKL----IRKDKSSYGFVHYFDRRSAALAILS 115
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N L+G+PI+VN A + + D + NIF+G+L PEV + LY +FS
Sbjct: 116 LNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFS---------- 165
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+F D +M D TG S+GF F+++ + +
Sbjct: 166 -----------------------------VFSSCSDARVMWDQKTGRSRGFGFVSFRNQQ 196
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
+ +I+ M+G++L +R I ++A K + GD
Sbjct: 197 DAQTAINEMNGKWLSSRQIRCNWATKGATSGD 228
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 93/231 (40%), Gaps = 42/231 (18%)
Query: 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMG 85
G E I+VG L +V++ +++ F + + D+ T +G+GF+ F
Sbjct: 135 GQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRN 194
Query: 86 EEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
++DA AI MN L + IR N A+ K G D+KL D S
Sbjct: 195 QQDAQTAINEMNGKWLSSRQIRCNWAT---KGATSG------------DDKLSSDGKSV- 238
Query: 146 GVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPE-------------- 191
V L T + GK +N+ + +N +++GNL PE
Sbjct: 239 -VELTTGSSED-----GKET-LNEETP--ENNSQFTTVYVGNLAPEVTQLDLHRYFHALG 289
Query: 192 --IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQ-YLCNRPISVSYAFK 239
++ + KGF F+ Y + + +I + Q YL NR I S+ K
Sbjct: 290 AGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYLFNRQIKCSWGNK 340
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 100/195 (51%), Gaps = 43/195 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKNIDNKAMYDTFSAFGNILSC- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D ++G SKG+ F+++ +
Sbjct: 129 --------------------------------------KVAQD-ESGVSKGYGFVHFETE 149
Query: 213 EASDASIDAMHGQYL 227
EA++ SID ++G L
Sbjct: 150 EAANKSIDRVNGMLL 164
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/288 (20%), Positives = 110/288 (38%), Gaps = 88/288 (30%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + M++ F G +++ + +D + +GYGF+ F EE A+ +
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDE-SGVSKGYGFVHFETEEAANKS 155
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
I +N + L GK N ++ + L D F +G I +
Sbjct: 156 IDRVNGMLLNGKK----------------------NFGEDMTDDKLKDMFEKYGTIT-SH 192
Query: 153 KIM-----------------------NMIKLYGKPI---------RVNKASSHQKNLDV- 179
K+M +++L GK + R K + Q+ L
Sbjct: 193 KVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRK 252
Query: 180 -------------GANIFIGNLDPEI----MRDP--------------DTGNSKGFAFIN 208
G N+++ NLD I +R + G SKGF F+
Sbjct: 253 FEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEGRSKGFGFVC 312
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLA 256
+++ E + ++ M+G+ + +P+ V+ A +K+ + S + LA
Sbjct: 313 FSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLA 360
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 100/195 (51%), Gaps = 43/195 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKNIDNKAMYDTFSAFGNILSC- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D ++G SKG+ F+++ +
Sbjct: 129 --------------------------------------KVAQD-ESGVSKGYGFVHFETE 149
Query: 213 EASDASIDAMHGQYL 227
EA++ SID ++G L
Sbjct: 150 EAANKSIDRVNGMLL 164
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 113/268 (42%), Gaps = 48/268 (17%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + M++ F G +++ + +D + +GYGF+ F EE A+ +
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDE-SGVSKGYGFVHFETEEAANKS 155
Query: 93 IKIMNMIKLYGKP---------------IRVNKASSHQKNL-DVGANI---FIGNLDPEV 133
I +N + L GK + +SH+ + D G + F+ DP+
Sbjct: 156 IDRVNGMLLNGKKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDA 215
Query: 134 DEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDV-------GANIFIG 186
E+ + + G + K M + + K R + + L + G N+++
Sbjct: 216 AEQAVLEL---NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVK 272
Query: 187 NLDPEI----MRDP--------------DTGNSKGFAFINYASFEASDASIDAMHGQYLC 228
NLD I +R + G SKGF F+ +++ E + ++ M+G+ +
Sbjct: 273 NLDDSIDDERLRKEFAPFGTITSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIV 332
Query: 229 NRPISVSYAFKKDSKGDRHGSAAERLLA 256
+P+ V+ A +K+ + S + LA
Sbjct: 333 TKPLYVALAQRKEDRKAHLASQYMQRLA 360
>gi|340939192|gb|EGS19814.1| hypothetical protein CTHT_0042990 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 777
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 42/211 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 68 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSVADGEKALE 127
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + GKP R+ + G NIFI NLD +D K L+DTF+AFG IL
Sbjct: 128 ELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILSC-- 185
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ D + GNSKG+ F++Y + E
Sbjct: 186 -------------------------------------KVATD-ENGNSKGYGFVHYETDE 207
Query: 214 ASDASIDAMHGQYLCNRPISVSYAF-KKDSK 243
A+ +I ++G L + + V Y KKD +
Sbjct: 208 AAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQ 238
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 129/295 (43%), Gaps = 43/295 (14%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+Y+ ++ +V+E E F + G + + + +D +G+GF+ + A ++
Sbjct: 250 NVYIKNINLEVTEEEFREFFSKWGEITSSTLARD-AEGKPRGFGFVNYSTHASAAKCVEE 308
Query: 96 MNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLL 138
MN + G+ + V +A H++ ++ G N++I NL EVD++ L
Sbjct: 309 MNGKEWRGQELYVGRAQKKHEREEELRKSYEAARLEKQNKYQGVNLYIKNLSDEVDDEKL 368
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKN-------LDVGANIFIGNLDPE 191
F+ FG I + K+M P K +++N + G+ PE
Sbjct: 369 RAMFAEFGPIT-SAKVMR-----DTPPEPAKDEKNKENNKESEKEGEKKEGEGEGDKKPE 422
Query: 192 IMR-DPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA 250
+ + + G SKGF F+ +A+ + + ++ M+ + + +P+ V+ A +K+ + + ++
Sbjct: 423 VKKPERKLGKSKGFGFVCFANPDDATKAVAEMNQRMVDGKPLYVALAQRKEVRKSQLEAS 482
Query: 251 --AERLLAAQNPLSQADRPHQL----FADAPPPAPLPPP-----PPPINIMGLPP 294
A L Q +QA P + + P LPP P P +G+PP
Sbjct: 483 IQARNQLRMQQQAAQAGLPQYMQPPVYYPGQQPGFLPPAAGRGMPFPQGALGMPP 537
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 93/231 (40%), Gaps = 50/231 (21%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + + F G +++ + D +GYGF+ + +E A A
Sbjct: 154 GHGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVATDE-NGNSKGYGFVHYETDEAAAQA 212
Query: 93 IKIMNMIKLYGKPIRVN----KASSHQKNLDVGA---NIFIGNLDPEVDEKLLYDTFSAF 145
IK +N + L K + V K K ++ A N++I N++ EV E+ + FS +
Sbjct: 213 IKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANYTNVYIKNINLEVTEEEFREFFSKW 272
Query: 146 GVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFA 205
G I + + RD + G +GF
Sbjct: 273 GEITSS---------------------------------------TLARDAE-GKPRGFG 292
Query: 206 FINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERL 254
F+NY++ ++ ++ M+G+ + + V A KK + + R A RL
Sbjct: 293 FVNYSTHASAAKCVEEMNGKEWRGQELYVGRAQKKHEREEELRKSYEAARL 343
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 102/200 (51%), Gaps = 43/200 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKNIDNKAMYDTFSAFGNILSC- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D ++G SKG+ F+++ +
Sbjct: 129 --------------------------------------KVAQD-ESGVSKGYGFVHFETE 149
Query: 213 EASDASIDAMHGQYLCNRPI 232
EA++ SID ++G L + +
Sbjct: 150 EAANKSIDRVNGMLLNGKKL 169
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/288 (20%), Positives = 115/288 (39%), Gaps = 80/288 (27%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + M++ F G +++ + +D + +GYGF+ F EE A+ +
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDE-SGVSKGYGFVHFETEEAANKS 155
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
I +N + L GK + N+++ N ++ + L + F +G I +
Sbjct: 156 IDRVNGMLLNGKKLFT--------------NVYVKNFGEDMTDDKLKEMFEKYGTIT-SH 200
Query: 153 KIM-----------------------NMIKLYGKPI---------RVNKASSHQKNLDV- 179
K+M +++L GK + R K + Q+ L
Sbjct: 201 KVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRK 260
Query: 180 -------------GANIFIGNLDPEI----MRDP--------------DTGNSKGFAFIN 208
G N+++ NLD I +R + G SKGF F+
Sbjct: 261 FEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEGRSKGFGFVC 320
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLA 256
+++ E + ++ M+G+ + +P+ V+ A +K+ + S + LA
Sbjct: 321 FSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLA 368
>gi|15231783|ref|NP_188026.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|9294635|dbj|BAB02974.1| RNA binding protein nucleolysin; oligouridylate binding protein
[Arabidopsis thaliana]
gi|22655004|gb|AAM98093.1| AT3g14100/MAG2_5 [Arabidopsis thaliana]
gi|28416511|gb|AAO42786.1| AT3g14100/MAG2_5 [Arabidopsis thaliana]
gi|332641947|gb|AEE75468.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 427
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 101/212 (47%), Gaps = 45/212 (21%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG + +V+E L+ E+F +GPV + + + + YGF+ + A AI
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKL----IRKDKSSYGFVHYFDRRSAALAILS 115
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N L+G+PI+VN A + + D + NIF+G+L PEV + LY +FS
Sbjct: 116 LNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFS---------- 165
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+F D +M D TG S+GF F+++ + +
Sbjct: 166 -----------------------------VFSSCSDARVMWDQKTGRSRGFGFVSFRNQQ 196
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
+ +I+ M+G++L +R I ++A K + GD
Sbjct: 197 DAQTAINEMNGKWLSSRQIRCNWATKGATSGD 228
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 93/231 (40%), Gaps = 42/231 (18%)
Query: 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMG 85
G E I+VG L +V++ +++ F + + D+ T +G+GF+ F
Sbjct: 135 GQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRN 194
Query: 86 EEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
++DA AI MN L + IR N A+ K G D+KL D S
Sbjct: 195 QQDAQTAINEMNGKWLSSRQIRCNWAT---KGATSG------------DDKLSSDGKSV- 238
Query: 146 GVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPE-------------- 191
V L T + GK +N+ + +N +++GNL PE
Sbjct: 239 -VELTTGSSED-----GKET-LNEETP--ENNSQFTTVYVGNLAPEVTQLDLHRYFHALG 289
Query: 192 --IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQ-YLCNRPISVSYAFK 239
++ + KGF F+ Y + + +I + Q YL NR I S+ K
Sbjct: 290 AGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYLFNRQIKCSWGNK 340
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 118/262 (45%), Gaps = 54/262 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG L+ V+++ +++LF Q G VV+V + +D T+ GYG++ + +DA A+
Sbjct: 30 TSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 89
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
++N L GKPIR+ + G NIFI NLD +D K L+DTFSAFG IL
Sbjct: 90 VLNFTPLNGKPIRIMYSHRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCKV 149
Query: 153 -------------------------------KIMNMIKLYGKPIRVNKASSHQKNLDVGA 181
++N +++ P + N +
Sbjct: 150 ATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERESTINKEKFN 209
Query: 182 NIFIGNLDP--------------------EIMRDPDTGNSKGFAFINYASFEASDASIDA 221
N+F+ N+ +MRD D G SK F F+N+ + + + S++A
Sbjct: 210 NVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGD-GKSKCFGFVNFENVDDAAMSVEA 268
Query: 222 MHGQYLCNRPISVSYAFKKDSK 243
++GQ ++ V A KK +
Sbjct: 269 LNGQKFDDKEWYVGKAQKKSER 290
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 58/227 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++V + + ++E + +F + GP+ +V + +D ++ + +GF+ F +DA +++ +
Sbjct: 211 VFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKS-KCFGFVNFENVDDAAMSVEAL 269
Query: 97 NMIKLYGKPIRVNKA-----------SSHQKNLD------VGANIFIGNLDPEVDEKLLY 139
N K K V KA S ++N+ GAN++I NLD + + L
Sbjct: 270 NGQKFDDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGANLYIKNLDDSIGDDKLK 329
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ F+ FG I ++MRDP+ G
Sbjct: 330 ELFAQFGTITSC---------------------------------------KVMRDPN-G 349
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
S+G F+ ++S E + ++ M+ + + ++P+ V+ A +K+ + R
Sbjct: 350 LSRGSGFVAFSSPEEASRALAEMNSKMVVSKPLYVALAQRKEDRRAR 396
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A +Y+ LDD + + + ELF Q G + + + +D +G GF+ F E+A A+
Sbjct: 312 ANLYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDP-NGLSRGSGFVAFSSPEEASRALA 370
Query: 95 IMNMIKLYGKPIRVNKASSHQ 115
MN + KP+ V A +
Sbjct: 371 EMNSKMVVSKPLYVALAQRKE 391
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 127/266 (47%), Gaps = 58/266 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++Y+G L V+E++++E F +GPV+++ + +D ++ GY ++ F DA+ A+
Sbjct: 52 ASLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALD 111
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
MN ++G+P+R+ + G NIFI NLD +D K +YDTFS FG IL
Sbjct: 112 TMNFETIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLFGNILSCKV 171
Query: 150 -------------------QTPKI----MNMIKLYGKPIRVNKASSHQKNL-DVG----- 180
++ +I +N + L GK + V K + + L ++G
Sbjct: 172 AADEDGSSRGYGFVHFETEESAQIAIEKVNGMLLSGKKVYVGKFQTRAQRLKELGESGLK 231
Query: 181 -ANIFIGN----LDPE----------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N+F+ N LD E +M D D G KGF F+ YA +A+ ++
Sbjct: 232 YTNVFVKNFGEHLDQEKLTKMFSKYGEITSAVVMTDAD-GKPKGFGFVAYADPDAAQKAV 290
Query: 220 DAMHGQYL--CNRPISVSYAFKKDSK 243
D ++ + L + +SV A KK +
Sbjct: 291 DDLNEKTLEGTDLKLSVCRAQKKSER 316
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 77/351 (21%), Positives = 139/351 (39%), Gaps = 91/351 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G+ I++ LD + +++ F G +++ + D + +GYGF+ F EE A A
Sbjct: 138 GNGNIFIKNLDRVIDNKSIYDTFSLFGNILSCKVAADE-DGSSRGYGFVHFETEESAQIA 196
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNL-DVG------ANIFIGNLDPEVDEKLLYDTFSAF 145
I+ +N + L GK + V K + + L ++G N+F+ N +D++ L FS +
Sbjct: 197 IEKVNGMLLSGKKVYVGKFQTRAQRLKELGESGLKYTNVFVKNFGEHLDQEKLTKMFSKY 256
Query: 146 GVILQT---------PK------------------IMNMIKLYGKPIRVNKASSHQKNLD 178
G I PK +N L G ++++ + +K+
Sbjct: 257 GEITSAVVMTDADGKPKGFGFVAYADPDAAQKAVDDLNEKTLEGTDLKLSVCRAQKKSER 316
Query: 179 V-------------------GANIFIGNLDPE--------------------IMRDPDTG 199
G N+++ N+D E +M D + G
Sbjct: 317 TADLKRKYEALKQERVQRYQGVNLYVKNIDEELTDEGLRAHFASFGTITSAKVMVD-ENG 375
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
SKGF F+ + E + A++ M+ + + ++P+ V+ A +K+ DR A + +
Sbjct: 376 RSKGFGFVCFEKPEEATAAVTEMNSKMMGSKPLYVALAQRKE---DRRAQLASQYMQKLA 432
Query: 260 PLSQADRPHQLFADAPPPAPLPPP-------PPPINIMGLP--PPPPSGLR 301
L R Q P AP+ P P P+ G P PP + +R
Sbjct: 433 TL----RMGQQTNGVPGMAPIYPQGQQGFFVPNPMAAQGRPVFQPPAAPMR 479
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 122/277 (44%), Gaps = 58/277 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + ED + A++
Sbjct: 48 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALE 107
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 108 ELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKV 167
Query: 154 IMNMI---KLYG-----KPIRVNKASSH-------QKNLDVG------------------ 180
+ + K YG N A H +K + VG
Sbjct: 168 AQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKAN 227
Query: 181 -ANIFIGNLD--------------------PEIMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N+D I RD D G S+GF F+NY EA+ ++
Sbjct: 228 FTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARD-DQGKSRGFGFVNYIRHEAAAVAV 286
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERL 254
D ++ + + V A KK + + R A RL
Sbjct: 287 DHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARL 323
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 127/297 (42%), Gaps = 41/297 (13%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV +D V++ ELF + G + + + +D ++ +G+GF+ ++ E A A+ +
Sbjct: 231 IYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKS-RGFGFVNYIRHEAAAVAVDHL 289
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N I+ G+ + V +A H++ ++ G N++I NL+ +VD++ L
Sbjct: 290 NDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLR 349
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
D F+ FG I I+ + + + K + G+ + D G
Sbjct: 350 DMFTPFGTITSAKVILRDEEKKDEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAG 409
Query: 200 N-------------SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
+ SKGF F+ +++ + + ++ M+ + + +P+ V+ A +KD + ++
Sbjct: 410 DKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQ 469
Query: 247 HGSAAERLLAAQNPLSQADRPHQLFAD------APPPAPLPPPPPPINIMGLPPPPP 297
E + A+N L + Q F AP P+ PP M P P
Sbjct: 470 ----LEATIQARNQLRMQQQQQQQFGGIPQMFIAPGQQPMMYPPGARGQMPFPAGMP 522
>gi|125808454|ref|XP_001360757.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
gi|54635929|gb|EAL25332.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
Length = 640
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 129/265 (48%), Gaps = 57/265 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E ++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN + KPIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 62 TMNFDLIRNKPIRIMWSQRDPSLRRSGVG-NVFIKNLDKGIDNKAIYDTFSAFGNILSCK 120
Query: 150 -----------------QTPKIMNM-------IKLYGKPIRVNK---ASSHQKNLDVGA- 181
+T + NM + L GK + V K +K L A
Sbjct: 121 VAIDEKGNSKGYGFVHFETEEAANMSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAK 180
Query: 182 ---NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASI 219
N+++ N D E +++ + G SKGF F+ Y + EA++A++
Sbjct: 181 LFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAV 240
Query: 220 DAMHGQYLC-NRPISVSYAFKKDSK 243
A++G+ + ++ + V+ A KK +
Sbjct: 241 QALNGKDMGESKSLYVARAQKKAER 265
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 102/211 (48%), Gaps = 42/211 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 64 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALE 123
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 124 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC-- 181
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ +D + GNSKG+ F++Y + E
Sbjct: 182 -------------------------------------KVAQD-ENGNSKGYGFVHYETDE 203
Query: 214 ASDASIDAMHGQYLCNRPISVSYAF-KKDSK 243
A+ +I ++G L + + V Y KKD +
Sbjct: 204 AAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQ 234
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 122/273 (44%), Gaps = 36/273 (13%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+YV ++ +V+E ELF + G V + + +D+ ++ +G+GF+ F + A A++
Sbjct: 246 NVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKS-RGFGFVNFSTHDSAAKAVEE 304
Query: 96 MNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N + G+ + V +A H++ ++ G N++I NL ++D+ L
Sbjct: 305 LNGKEFRGQELYVGRAQKKHEREEELRKSYEAARAEKANKYQGVNLYIKNLADDIDDDKL 364
Query: 139 YDTFSAFGVILQTPKIM--NMIKLYGKPIRVNKASSHQKN------------LDVGANIF 184
FS FG I + K+M N + + K ++K +
Sbjct: 365 RQMFSEFGPIT-SAKVMRDNPPDHHHSADKEGKDKENKKEGEQEAKKEGKEEGEKDGEAK 423
Query: 185 IGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
G E + G SKGF F+ +++ + + ++ M+ + + +P+ V+ A +KD +
Sbjct: 424 EGEKKTEKKPERKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVEGKPLYVALAQRKDVRK 483
Query: 245 DRHGSA--AERLLAAQNPLSQADRPHQLFADAP 275
+ ++ A L Q +QA P Q + AP
Sbjct: 484 SQLEASIQARNQLRMQQAAAQAGLPQQ-YMQAP 515
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 126/280 (45%), Gaps = 57/280 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 62 ASLYVGELDSSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKALE 121
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 122 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 181
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 182 AQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKAN 241
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N+ E + RD D+ S+GF F+N+ + E + ++
Sbjct: 242 FTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAKAV 301
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
D ++G+ + + V A KK + + R A R+ A
Sbjct: 302 DELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKA 341
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 109/231 (47%), Gaps = 22/231 (9%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV + + ++ ELF + G V + + +D + +G+GF+ F+ E A A+ +
Sbjct: 245 IYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAKAVDEL 304
Query: 97 NMIKLYGKPIRVNKAS-SHQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N G+ + V +A H++ ++ G N+++ NLD +VD+ L
Sbjct: 305 NGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVDDDKLR 364
Query: 140 DTFSAFGVILQTPKIMN---MIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196
+ F+ FG I + K+M + + +++N+ G N + + +
Sbjct: 365 ELFTPFGSIT-SAKVMRDTPAETAEAEEKEKKDSEKNKENIKEGETAEAENTEDKPKSEK 423
Query: 197 DT-GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
T G SKGF F+ + + E + ++ M+ + + N+P+ V+ A +KD + ++
Sbjct: 424 RTVGKSKGFGFVCFNNPEEASKAVTDMNQRMVNNKPLYVALAQRKDVRKNQ 474
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 123/260 (47%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L++ F GPV+++ + +D+VT+ GY ++ F+ DA A+
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K LY+ FSAFG IL +
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIG-NVFIKNLDKSIDNKTLYEHFSAFGKILSSK 186
Query: 153 KI--------------------------MNMIKLYGKPI-------RVNKASSHQKNLDV 179
+ MN L G + R ++ + +
Sbjct: 187 VMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 246
Query: 180 GANIFI----GNLDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
NI+I G +D E ++D +G SKGF F+++ S EA+ +++
Sbjct: 247 FTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 306
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ + + I V A KK
Sbjct: 307 EMNGRDINGQLIFVGRAQKK 326
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 91/218 (41%), Gaps = 59/218 (27%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IY+ ++ + + ++F + G ++V + D ++ +G+GF+ F E A A++ M
Sbjct: 250 IYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKS-KGFGFVSFDSHEAAKKAVEEM 308
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N + G+ I R K Q L G ++I NLD +D++ L
Sbjct: 309 NGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 368
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ FS+FG I + K+M + G
Sbjct: 369 NEFSSFGSISRV-KVMQ----------------------------------------EEG 387
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
SKGF I ++S E + ++ M+G+ L ++P+S++ A
Sbjct: 388 QSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 425
>gi|195381687|ref|XP_002049579.1| GJ21671 [Drosophila virilis]
gi|194144376|gb|EDW60772.1| GJ21671 [Drosophila virilis]
Length = 645
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 124/267 (46%), Gaps = 61/267 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E ++E F +GPV+++ + +D VT+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + KPIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 62 TMNFDLIRNKPIRIMWSQRDPSLRRSGVG-NVFIKNLDKAIDNKAIYDTFSAFGNILSCK 120
Query: 153 ----------------------------KIMNMIKLYGKPIRVNK---ASSHQKNLDVGA 181
K+ M+ L GK + V K +K L A
Sbjct: 121 VATDEKGNSKGYGFVHFETEEAANTSIDKVNGML-LNGKKVYVGKFIPRKEREKELGEKA 179
Query: 182 ----NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDA 217
N+++ N E +M D G SKGF F+ Y + EA++A
Sbjct: 180 KLFTNVYVKNFTEEFDDEKLKEFFEPYGKITSYKVMSKED-GKSKGFGFVAYETTEAAEA 238
Query: 218 SIDAMHGQYLCN-RPISVSYAFKKDSK 243
++ A++G+ + + + V+ A KK +
Sbjct: 239 AVQALNGKDMGEGKSLYVARAQKKAER 265
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 116/284 (40%), Gaps = 76/284 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D + +GYGF+ F EE A+ +
Sbjct: 88 GVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGNS-KGYGFVHFETEEAANTS 146
Query: 93 IKIMNMIKLYGKPIRVNK---ASSHQKNLDVGA----NIFIGNLDPEVDEKLLYDTFSAF 145
I +N + L GK + V K +K L A N+++ N E D++ L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEEFDDEKLKEFFEPY 206
Query: 146 GVILQTPKIMN-----------------------MIKLYGKPI---------RVNKASSH 173
G I + K+M+ + L GK + R K +
Sbjct: 207 GKIT-SYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAER 265
Query: 174 QKNLD--------------VGANIFIGNLD--------------------PEIMRDPDTG 199
Q+ L G N+++ NLD ++M D D G
Sbjct: 266 QQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTD-DEG 324
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ + S + ++ ++G+ + ++P+ V+ A +K+ +
Sbjct: 325 RSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALAQRKEER 368
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 119/267 (44%), Gaps = 61/267 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + +D + A++
Sbjct: 57 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSDDGEKALE 116
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 117 ELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSCKV 176
Query: 153 --------------------------KIMNMIKLYGKPI----------RVNKASSHQKN 176
K +N + L K + R++K + N
Sbjct: 177 AQDENGNSKGYGFVHYETAEAANNAIKAVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKAN 236
Query: 177 LDVGANIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASD 216
N+++ N+D E+ D +TG S+GF F+N+ E++
Sbjct: 237 F---TNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSRGFGFVNFVKHESAA 293
Query: 217 ASIDAMHGQYLCNRPISVSYAFKKDSK 243
++D ++ + + + V A KK +
Sbjct: 294 KAVDELNDKDWKGQKLYVGRAQKKHER 320
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 111/248 (44%), Gaps = 42/248 (16%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+YV +D +V++ ELF + G + + + D T +G+GF+ F+ E A A+
Sbjct: 239 NVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSRGFGFVNFVKHESAAKAVDE 298
Query: 96 MNMIKLYGKPIRVNKA-SSHQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N G+ + V +A H++ ++ G N+++ NL +VD++ L
Sbjct: 299 LNDKDWKGQKLYVGRAQKKHEREEELRKQYEAARAEKQSKYQGVNLYVKNLHDDVDDEKL 358
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKP---------------------IRVNKASSHQKNL 177
D F+ FG I + K+M + G+ K+ S ++N
Sbjct: 359 RDMFAPFGTIT-SAKVMRDTQPVGRSGSESPKKEGEEEEEEKKETEEKEPEKSGSDEENK 417
Query: 178 DVGANIFIGNLDPEIMRDPDT--GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235
D G + +D ++ G SKGF F+ +++ + + ++ M+ + + +P+ V+
Sbjct: 418 D-GVDKLTKEMDKVTIKGEQKILGKSKGFGFVCFSNPDEATKAVTEMNQKMMNGKPLYVA 476
Query: 236 YAFKKDSK 243
A +KD +
Sbjct: 477 LAQRKDVR 484
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 43/220 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D VT+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLHADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 62 TMNFDLIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKNIDNKAMYDTFSAFGNILSC- 119
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D + GNSKG+ F+++ +
Sbjct: 120 --------------------------------------KVAQD-EKGNSKGYGFVHFETE 140
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
E+++ SI+ ++G L + + V + + G A+
Sbjct: 141 ESANTSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAK 180
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 105/235 (44%), Gaps = 63/235 (26%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVH-MPKDRVTQTHQGYGFIEFMGE 86
GE +YV D++++ + E+F + G + + M KD ++ G+GF+ F
Sbjct: 176 GEKAKLFTNVYVKNFGDELNDETLKEMFEKYGTITSHRVMIKDGKSR---GFGFVAFENP 232
Query: 87 EDADYAIKIMNMIKL-YGKPIRVNKASS-HQKNLDV----------------GANIFIGN 128
E A++A++ +N +L GK + V +A +++ +++ G N+++ N
Sbjct: 233 ESAEHAVQELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKN 292
Query: 129 LDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNL 188
LD +D++ L FS FG I + K+M
Sbjct: 293 LDDSIDDERLRKEFSPFGTIT-SAKVM--------------------------------- 318
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ +++ E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 319 -------LEEGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALAQRKEDR 366
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 124/260 (47%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L++ F GPV+++ + +D+VT+ GY ++ F+ DA A+
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K LY+ FSAFG IL +
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIG-NVFIKNLDKSIDNKTLYEHFSAFGKILSSK 186
Query: 153 KI--------------------------MNMIKLYGKPI-------RVNKASSHQKNLDV 179
+ MN L G + R ++ + +
Sbjct: 187 VMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 246
Query: 180 GANIFI----GNLDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I G++D E ++D +G SKGF F+++ S EA+ +++
Sbjct: 247 FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 306
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ + + I V A KK
Sbjct: 307 EMNGRDINGQLIFVGRAQKK 326
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 90/220 (40%), Gaps = 59/220 (26%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+Y+ + + + ++F + G ++V + D ++ +G+GF+ F E A A++
Sbjct: 248 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKS-KGFGFVSFDSHEAAKKAVE 306
Query: 95 IMNMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKL 137
MN + G+ I R K Q L G ++I NLD +D++
Sbjct: 307 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 366
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + FS+FG I + K+M +
Sbjct: 367 LRNEFSSFGSISRV-KVM----------------------------------------QE 385
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
G SKGF I ++S E + ++ M+G+ L ++P+S++ A
Sbjct: 386 EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 425
>gi|307095208|gb|ADN29910.1| poly A binding protein cytoplasmic 1 isoform 1-like protein
[Triatoma matogrossensis]
Length = 341
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 103/202 (50%), Gaps = 43/202 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V++ +++E F +GPV+++ + KD +T+ GY ++ F DA+ A+
Sbjct: 13 ASLYVGDLHSDVTKAMLFEKFSSAGPVLSIRVCKDMITRRSLGYAYVNFQQPADAERALD 72
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN L G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 73 TMNFDTLKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKNIDNKAMYDTFSAFGNILSC- 130
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D ++G+SKG+ F+++ +
Sbjct: 131 --------------------------------------KVAQD-ESGSSKGYGFVHFETE 151
Query: 213 EASDASIDAMHGQYLCNRPISV 234
EA+ SID ++G L + + V
Sbjct: 152 EAATKSIDKVNGMLLNGKKVFV 173
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 24/148 (16%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVN--VHMPKDRVTQTHQGYGFIEFMG 85
GE +YV + ++ ++ E+F + GP+ + V + KD Q +G+GF+ F
Sbjct: 187 GEKAKLFTNVYVKNFGEDFTDDMLKEMFEKYGPITSHTVVVNKD---QKSRGFGFVAFED 243
Query: 86 EEDADYAIKIMNMIKLY-GKPI---RVNKASSHQKNLDV--------------GANIFIG 127
E A+ A++ +N ++ GK + R K + Q+ L G N+++
Sbjct: 244 PEAAERAVEDLNGKEIIEGKQLYVGRAQKKAERQQELKRKFEQLKMERMNRYQGVNLYVK 303
Query: 128 NLDPEVDEKLLYDTFSAFGVILQTPKIM 155
NLD +D++ L FS FG I + K+M
Sbjct: 304 NLDDTIDDERLRKEFSPFGTIT-SAKVM 330
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 100/195 (51%), Gaps = 43/195 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKNIDNKAMYDTFSAFGNILSC- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D ++G SKG+ F+++ +
Sbjct: 129 --------------------------------------KVAQD-ESGVSKGYGFVHFETE 149
Query: 213 EASDASIDAMHGQYL 227
EA++ SID ++G L
Sbjct: 150 EAANKSIDKVNGMLL 164
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 113/270 (41%), Gaps = 52/270 (19%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + M++ F G +++ + +D + +GYGF+ F EE A+ +
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDE-SGVSKGYGFVHFETEEAANKS 155
Query: 93 IKIMNMIKLYGKP---------------IRVNKASSHQKNL-DVGANI---FIGNLDPEV 133
I +N + L GK + +SH+ + D G + F+ DP+
Sbjct: 156 IDKVNGMLLNGKKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDA 215
Query: 134 DEKLLYD---------TFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIF 184
E+ + + G + + +K + +++ + S +Q G N++
Sbjct: 216 AEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQ-----GVNLY 270
Query: 185 IGNLDPEIMRDP------------------DTGNSKGFAFINYASFEASDASIDAMHGQY 226
+ NLD I + + G SKGF F+ +++ E + ++ M+G+
Sbjct: 271 VKNLDDSINDERLRREFAPFGTITSAKVMMEDGRSKGFGFVCFSAPEEATKAVTEMNGRI 330
Query: 227 LCNRPISVSYAFKKDSKGDRHGSAAERLLA 256
+ +P+ V+ A +K+ + S + LA
Sbjct: 331 IVTKPLYVALAQRKEDRKAHLASQYMQRLA 360
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 103/221 (46%), Gaps = 42/221 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E ++++ F SGPV+++ + +D VT+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
MN + GKPIR+ + G N+FI NLD +D K LYDTFS+FG IL
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKV 121
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+ D SKGF F++Y S E
Sbjct: 122 VC-----------------------------------------DINGSKGFGFVHYESDE 140
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
++ +I+ ++G + ++ + V+ ++ + G AA+
Sbjct: 141 SAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHF 181
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 93/238 (39%), Gaps = 57/238 (23%)
Query: 23 KLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIE 82
++ G++ ++V L D + E F Q G VV+ + D T + +GFI
Sbjct: 170 RMREFGDAAKHFTNLFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCHGFIS 229
Query: 83 FMGEEDADYAIKIMNMIKLYGKPI---RVNKASSHQKNLDV--------------GANIF 125
F + A+ A++IM+ ++ GK + R K + L G N++
Sbjct: 230 FKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLY 289
Query: 126 IGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFI 185
+ NLD +D++ L + F FG I I ++
Sbjct: 290 VKNLDDSIDDEGLREAFKQFGNITSAKVITDL---------------------------- 321
Query: 186 GNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ +P+ V A +K+ +
Sbjct: 322 ------------NGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDR 367
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 127/266 (47%), Gaps = 59/266 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E ++E F +GPV+++ + +D VT+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + KPIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 62 TMNFDLIRDKPIRIMWSQRDPSLRRSGVG-NVFIKNLDKAIDNKAIYDTFSAFGNILSCK 120
Query: 153 ----------------------------KIMNMIKLYGKPIRVNK---ASSHQKNLDVGA 181
K+ M+ L GK + V K +K L A
Sbjct: 121 VATDEKGTSKGYGFVHFETEEAANTSIDKVNGML-LNGKKVYVGKFIPRKEREKELGEKA 179
Query: 182 ----NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDAS 218
N+++ N D E +++ + G SKGF F+ Y + EA++A+
Sbjct: 180 KLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAA 239
Query: 219 IDAMHGQYLCN-RPISVSYAFKKDSK 243
+ A++G+ + + + + V+ A KK +
Sbjct: 240 VQALNGKDMGDGKTLYVARAQKKAER 265
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 116/284 (40%), Gaps = 76/284 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D T +GYGF+ F EE A+ +
Sbjct: 88 GVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDE-KGTSKGYGFVHFETEEAANTS 146
Query: 93 IKIMNMIKLYGKPIRVNK---ASSHQKNLDVGA----NIFIGNLDPEVDEKLLYDTFSAF 145
I +N + L GK + V K +K L A N+++ N + D++ L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 146 GVILQTPKIMN-----------------------MIKLYGKPI---------RVNKASSH 173
G I + K+M+ + L GK + R K +
Sbjct: 207 GKIT-SYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGDGKTLYVARAQKKAER 265
Query: 174 QKNLD--------------VGANIFIGNLD--------------------PEIMRDPDTG 199
Q+ L G N+++ NLD ++M D + G
Sbjct: 266 QQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEE-G 324
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ + S + ++ ++G+ + ++P+ V+ A +K+ +
Sbjct: 325 RSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALAQRKEER 368
>gi|71993203|ref|NP_001021709.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
gi|3880681|emb|CAA21572.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
Length = 646
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 123/272 (45%), Gaps = 54/272 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E++++E F +GPV+++ + +D T+ GY ++ F DA+ A+
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
MN L+GKP+R+ + GA NIFI NLD +D K +YDTFS FG IL
Sbjct: 92 TMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKV 151
Query: 153 --------------------------KIMNMIKLYGKPIRVNKAS-SHQKNLDVG----- 180
+ +N + L GK + V K Q+N ++G
Sbjct: 152 AIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQ 211
Query: 181 -ANIFIGNLDPEIMRD------------------PDTGNSKGFAFINYASFEASDASIDA 221
N+++ N ++ G SKGF F+ +A+ E ++ ++ A
Sbjct: 212 FTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQA 271
Query: 222 MHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
+H + + + + + K +RH ++
Sbjct: 272 LHDSTIEGTDLKL-HVCRAQKKSERHAELKKK 302
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/249 (20%), Positives = 99/249 (39%), Gaps = 61/249 (24%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GE+ +YV D ++ + +LF + G + + + V +G+GF+ F E
Sbjct: 206 GETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT--VEGKSKGFGFVAFANPE 263
Query: 88 DADYAIKIMNMIKLYGKPI-----RVNKASSHQKNLD--------------VGANIFIGN 128
+A+ A++ ++ + G + R K S L G N+++ N
Sbjct: 264 EAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKN 323
Query: 129 LDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNL 188
LD VD+ L F ++G I
Sbjct: 324 LDETVDDDGLKKQFESYGNI---------------------------------------T 344
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
++M D + G SKGF F+ + E + +++ M+ + +C++P+ V+ A +K+ + +
Sbjct: 345 SAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLA 403
Query: 249 SAAERLLAA 257
S + LA+
Sbjct: 404 SQYMQRLAS 412
>gi|47933430|gb|AAT39343.1| polyadenylate binding protein [Oikopleura dioica]
Length = 610
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 103/221 (46%), Gaps = 42/221 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E ++++ F SGPV+++ + +D VT+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
MN + GKPIR+ + G N+FI NLD +D K LYDTFS+FG IL
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKV 121
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+ D SKGF F++Y S E
Sbjct: 122 VC-----------------------------------------DINGSKGFGFVHYESDE 140
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
++ +I+ ++G + ++ + V+ ++ + G AA+
Sbjct: 141 SAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHF 181
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 104/247 (42%), Gaps = 30/247 (12%)
Query: 23 KLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIE 82
++ G++ ++V L D + + F Q G VV+ + D T + +GFI
Sbjct: 170 RMREFGDAAKHFTNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFIS 229
Query: 83 FMGEEDADYAIKIMNMIKLYGKPI---RVNKASSHQKNLDV--------------GANIF 125
F + A+ A++IM+ ++ GK + R K + L G N++
Sbjct: 230 FKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLY 289
Query: 126 IGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQK-NLDVGANIF 184
+ NLD +D++ L + F FG I I ++ + V +A S Q + A
Sbjct: 290 VKNLDDSIDDEGLREAFKQFGNITSAKVITDL----NEKDEVGQAKSDQAPEEEGEAVEE 345
Query: 185 IGNLDPEIMRDP--------DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSY 236
D E D G SKGF F+ ++S E + ++ M+G+ +P+ V
Sbjct: 346 KKTEDSEAAGDAPGPEKPVSKKGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGL 405
Query: 237 AFKKDSK 243
A +K+ +
Sbjct: 406 AQRKEDR 412
>gi|389742195|gb|EIM83382.1| polyadenylate-binding protein [Stereum hirsutum FP-91666 SS1]
Length = 422
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 108/215 (50%), Gaps = 45/215 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG--YGFIEFMGEEDADYA 92
A +YVG L +V+E ++ E+F +GPV +V + DR Q H G YGF+E+M A+ A
Sbjct: 16 AHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQ-HGGLNYGFVEYMDMRAAETA 74
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGAN---IFIGNLDPEVDEKLLYDTFSAFGVIL 149
++ +N K++ IRVN A Q+N + +N +F+G+L PEV++ +L F+AFG +
Sbjct: 75 LQTLNGRKIFDTEIRVNWAYQGQQNKEDTSNHFHVFVGDLSPEVNDDVLAKAFAAFGTM- 133
Query: 150 QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINY 209
D +M D ++G S+G+ F+ +
Sbjct: 134 --------------------------------------SDARVMWDMNSGKSRGYGFLAF 155
Query: 210 ASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
++ +I M+G++L +R I V++A +K G
Sbjct: 156 RDKTDAEQAIATMNGEWLGSRAIRVNWANQKTQGG 190
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 130/282 (46%), Gaps = 61/282 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D +T+ GY ++ + D + A++
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAITRRSLGYAYVNYNTTVDGEKALE 120
Query: 95 IMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL-- 149
+N + G+P R+ + + +KN N+FI NLD +D K L+DTF+AFG IL
Sbjct: 121 ELNYTLIKGRPCRIMWSQRDPALRKNGQ--GNVFIKNLDVAIDNKALHDTFAAFGNILSC 178
Query: 150 -------------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVG 180
Q K +N + L K + V K K ++
Sbjct: 179 KVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMK 238
Query: 181 A---NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDA 217
A NI++ N+ E + RD ++G S+GF F+N+ + E +
Sbjct: 239 ANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKSRGFGFVNFINHEHAAT 298
Query: 218 SIDAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
++D ++G+ + + V A KK + + R A R+ A
Sbjct: 299 AVDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARMEKA 340
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 129/294 (43%), Gaps = 37/294 (12%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
IYV + + +E ELF + G V + + +D + +G+GF+ F+ E A A+
Sbjct: 243 NIYVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKSRGFGFVNFINHEHAATAVDE 302
Query: 96 MNMIKLYGKPIRVNKAS-SHQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N G+ + V +A H++ ++ G N+++ NLD E+D++ L
Sbjct: 303 LNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARMEKASKYQGVNLYVKNLDDEIDDEKL 362
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI------ 192
+ F+ FG I + K+M P A ++ + + E
Sbjct: 363 RELFAPFGAIT-SAKVMR-----DTPAETADAEDKKEKDEEKNKENKKEGEAETEEASAP 416
Query: 193 -MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA- 250
+ P G SKGF F+ + + + + ++ M+ + + N+P+ V+ A +KD + + ++
Sbjct: 417 KAKRP-LGKSKGFGFVCFNNPDEATKAVSDMNQRMVSNKPLYVALAQRKDVRKSQLEASI 475
Query: 251 -AERLLAAQNPLSQADRPHQLFADAP---PPAPLPPPPPPINIMGLPPPPPSGL 300
A + Q +QA P Q + AP PP P P G+ PP +G+
Sbjct: 476 QARNQIRMQQAAAQAGMPQQ-YMQAPMFFPPGAQQPGFLPQGGRGMQFPPQAGM 528
>gi|392339709|ref|XP_003753884.1| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 1-like [Rattus norvegicus]
Length = 475
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 119/237 (50%), Gaps = 27/237 (11%)
Query: 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDAD 90
G +++YVG L V+E +++E+F G ++++ + +D T+ GY +I F DA+
Sbjct: 7 GCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAE 66
Query: 91 YAIKIMNMIKLYGKPIRVNKASSHQ----KNLDVGANIFIGNLDPEVDEKLLYDTFSAFG 146
A+ MN + G+PIR+ SH+ + +G NIFI NL+ +D K LYDTFS FG
Sbjct: 67 RALDTMNFEMIKGQPIRI--MWSHRDPGLRRSGMG-NIFIKNLENSIDNKALYDTFSTFG 123
Query: 147 VILQTPKIMNMIKLYG-KPIRVNKASSHQKNLDVGANIF-------------IGNLDPEI 192
IL + + N G + + QK ++ + + +L P
Sbjct: 124 SILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVRSDYPWSLASLCPAT 183
Query: 193 MRD------PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ ++ +SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 184 LISSCFQVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 240
>gi|221121498|ref|XP_002156904.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Hydra
magnipapillata]
Length = 635
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 108/222 (48%), Gaps = 43/222 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L+ V+E +++E F Q+GPV+++ + +D VT+ GY ++ F DA+ AI
Sbjct: 11 ASLYVGDLNPDVTEAMLFEKFSQTGPVLSIRVCRDLVTRRSLGYAYVNFQQPADAERAID 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+P R+ ++ + VG NIFI NLD +D K LYD FSAFG IL
Sbjct: 71 TMNYDPIKGRPCRIMWSQRDPTLRRSGVG-NIFIKNLDKNIDNKGLYDAFSAFGNILSC- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
K + KN+ S+G+ F++Y +
Sbjct: 129 ----------------KIAVDSKNV-----------------------SRGYGFVHYETK 149
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
EA+ +I ++G L ++ + V K + ++ G A++
Sbjct: 150 EAAHEAIAKVNGMMLNDKKVFVGEFMSKRERLEKLGDQAKKF 191
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/299 (20%), Positives = 125/299 (41%), Gaps = 75/299 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ + +E A A
Sbjct: 97 GVGNIFIKNLDKNIDNKGLYDAFSAFGNILSCKIAVDS-KNVSRGYGFVHYETKEAAHEA 155
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLD-VG------ANIFIGNLDPEVDEKLLYDTFSAF 145
I +N + L K + V + S ++ L+ +G N+F+ N +DE+ L + F
Sbjct: 156 IAKVNGMMLNDKKVFVGEFMSKRERLEKLGDQAKKFKNVFVKNFGDSLDEEKLKEMFGKH 215
Query: 146 GVILQTPKI--------------------------MNMIKLYGKPIRVNKASSH-QKNLD 178
G I + +N +++ G+ + V +A ++ ++
Sbjct: 216 GEITSCVVMAESGKSKGFGFVAFEAPEAAEAAVNELNGLEIEGRKLVVCRAQKKAERTME 275
Query: 179 V----------------GANIFIGNLD--------------------PEIMRDPDTGNSK 202
+ G N++I NL+ ++M+D + G SK
Sbjct: 276 LKSRFEAQKMERINRYQGVNLYIKNLEDGLDDERLRSEFSTYGTITSAKVMKD-EKGISK 334
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPL 261
GF F+ ++S + + ++ M+G+ L +P+ V+ A +K+ +R + + L NPL
Sbjct: 335 GFGFVCFSSPDEATKAVTEMNGRILVTKPLYVALAQRKE---ERRAQLSTQFLQRVNPL 390
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 123/266 (46%), Gaps = 57/266 (21%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
SG A++YVG L V+E +++E F +G ++++ + +D T+ GY +I F DA
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 90 DYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
+ A+ MN L G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG
Sbjct: 66 ERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGN 124
Query: 148 IL--------------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVG 180
IL Q MN + L + + V S ++ ++G
Sbjct: 125 ILSCKVACDKHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAAELG 184
Query: 181 A------NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEA 214
A NI++ N L ++MRD ++G S+ F F+N+ E
Sbjct: 185 ARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRD-NSGRSRCFGFVNFEKHEE 243
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKK 240
+ ++ M+G+ + R + S A K+
Sbjct: 244 AQKAVVHMNGKEVSGRLLYASRAQKR 269
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 140/346 (40%), Gaps = 83/346 (23%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G I++ L+D + +++ F G +++ + D+ +G+GF+ F E
Sbjct: 92 GLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDK--HGSRGFGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI MN + L + + V S ++ ++GA NI++ NL +VDE+ L D
Sbjct: 150 AAQQAINTMNGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQD 209
Query: 141 TFSAFGVILQTPKIMN-----------------------MIKLYGKPI--RVNKASSHQK 175
FS FG +L K+M ++ + GK + R+ AS QK
Sbjct: 210 LFSQFGKMLSV-KVMRDNSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQK 268
Query: 176 NLDV--------------------GANIFIGNLDPEIMRD------------------PD 197
++ G N+++ NLD I D +
Sbjct: 269 RVERQNELKRKFEQMKQDRLSRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE 328
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK----GDRHGSAAER 253
+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + +++
Sbjct: 329 GSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLST 388
Query: 254 LLAAQNP-LSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPPS 298
+ NP L +P F A +P PP G P P+
Sbjct: 389 MRTLSNPLLGSFQQPSSYFLPA-----VPQPPAQAAYYGCGPVTPT 429
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 52/186 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN L G+PIR+ ++ + VG NIFI NL+ I + D
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
D S+GF F+++ + EA+ +I+ M+G L +R + V + FK S+ +R R
Sbjct: 130 VACDKHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FK--SRRERAAELGAR 186
Query: 254 LLAAQN 259
L N
Sbjct: 187 ALEFTN 192
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 103/221 (46%), Gaps = 42/221 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E ++++ F SGPV+++ + +D VT+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
MN + GKPIR+ + G N+FI NLD +D K LYDTFS+FG IL
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKV 121
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+ D SKGF F++Y S E
Sbjct: 122 VC-----------------------------------------DINGSKGFGFVHYESDE 140
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
++ +I+ ++G + ++ + V+ ++ + G AA+
Sbjct: 141 SAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHF 181
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 93/238 (39%), Gaps = 57/238 (23%)
Query: 23 KLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIE 82
++ G++ ++V L D + + F Q G VV+ + D T + +GFI
Sbjct: 170 RMREFGDAAKHFTNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFIS 229
Query: 83 FMGEEDADYAIKIMNMIKLYGKPI---RVNKASSHQKNLDV--------------GANIF 125
F + A+ A++IM+ ++ GK + R K + L G N++
Sbjct: 230 FKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLY 289
Query: 126 IGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFI 185
+ NLD +D++ L + F FG I I ++
Sbjct: 290 VKNLDDSIDDEGLREAFKQFGNITSAKVITDL---------------------------- 321
Query: 186 GNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ +P+ V A +K+ +
Sbjct: 322 ------------NGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDR 367
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 43/220 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D VT+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 62 TMNFDLIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKNIDNKAMYDTFSAFGNILSC- 119
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D + GNSKG+ F+++ +
Sbjct: 120 --------------------------------------KVAQD-EKGNSKGYGFVHFETE 140
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
E+++ SI+ ++G L + + V + + G A+
Sbjct: 141 ESANTSIEKVNGMLLNAKKVFVGRFIPRKEREKELGEKAK 180
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 104/235 (44%), Gaps = 63/235 (26%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVH-MPKDRVTQTHQGYGFIEFMGE 86
GE +YV D++++ + E+F + G + + M K+ ++ G+GF+ F
Sbjct: 176 GEKAKLFTNVYVKNFGDELTDESLKEMFEKYGTITSHRVMIKENKSR---GFGFVAFENP 232
Query: 87 EDADYAIKIMNMIKLY-GKPIRVNKASS-HQKNLDV----------------GANIFIGN 128
E A+ A++ +N +L GK + V +A +++ +++ G N+++ N
Sbjct: 233 ESAEVAVQELNGKELGDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKN 292
Query: 129 LDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNL 188
LD +D++ L FS FG I + K+M
Sbjct: 293 LDDSIDDERLRKEFSPFGTIT-SAKVM--------------------------------- 318
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ +++ E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 319 -------LEEGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALAQRKEDR 366
>gi|780291|gb|AAA65224.1| polyadenylate-binding protein [Caenorhabditis elegans]
Length = 646
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 123/272 (45%), Gaps = 54/272 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E++++E F +GPV+++ + +D T+ GY ++ F DA+ A+
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
MN L+GKP+R+ + GA NIFI NLD +D K +YDTFS FG IL
Sbjct: 92 TMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKV 151
Query: 153 --------------------------KIMNMIKLYGKPIRVNKAS-SHQKNLDVG----- 180
+ +N + L GK + V K Q+N ++G
Sbjct: 152 AIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQ 211
Query: 181 -ANIFIGNLDPEIMRD------------------PDTGNSKGFAFINYASFEASDASIDA 221
N+++ N ++ G SKGF F+ +A+ E ++ ++ A
Sbjct: 212 FTNVYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQA 271
Query: 222 MHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
+H + + + + + K +RH ++
Sbjct: 272 LHDSTIEGTDLKL-HVCRAQKKSERHAELKKK 302
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/247 (19%), Positives = 96/247 (38%), Gaps = 64/247 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GE+ +YV D ++ + ++F + G + + + V +G+GF+ F E
Sbjct: 206 GETAKQFTNVYVKNFGDHYNKETLEKVFAKFGNITSCEVMT--VEGKSKGFGFVAFANPE 263
Query: 88 DADYAIKIMNMIKLYGKPI-----RVNKASSHQKNLD--------------VGANIFIGN 128
+A+ A++ ++ + G + R K S L G N+++ N
Sbjct: 264 EAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKN 323
Query: 129 LDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNL 188
LD VD+ L F ++G I
Sbjct: 324 LDETVDDDGLKKQFESYGNI---------------------------------------T 344
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
++M D + G SKGF F+ + E + +++ M+ + +C++P+ V+ +K+ DR
Sbjct: 345 SAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIGQRKE---DRRA 400
Query: 249 SAAERLL 255
A + +
Sbjct: 401 QLASQYM 407
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 45/218 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG LD V + ++++F Q G VV+V + +D T+ GY ++ F DA A++
Sbjct: 42 TSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAME 101
Query: 95 IMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
++N + GKPIR+ N+ S +K+ ANIFI NLD +D K L+DTFSAFG IL +
Sbjct: 102 MLNFTPVNGKPIRIMYSNRDPSSRKS--GAANIFIKNLDKSIDNKALFDTFSAFGTIL-S 158
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
K+ I +G SKG+ F+ Y
Sbjct: 159 CKVATEI---------------------------------------SGESKGYGFVQYEQ 179
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
E++ +I+ ++G L ++ + V +K + + GS
Sbjct: 180 DESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGS 217
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 114/284 (40%), Gaps = 72/284 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + +++ F G +++ + + ++ +GYGF+++ +E A A
Sbjct: 128 GAANIFIKNLDKSIDNKALFDTFSAFGTILSCKVATE-ISGESKGYGFVQYEQDESAQNA 186
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA-----NIFIGNLDPEVDEKLLYDTFSAFGV 147
I +N + L K + V Q+ +V N+++ NL E L + F FG
Sbjct: 187 INELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTEDNLKEMFGKFGP 246
Query: 148 ILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQKNL 177
I + +N KL K + R K S + L
Sbjct: 247 ITSVIVVRADDGKSRCFGFVNFENPDDAARAVEDLNGKKLDDKELYVGRAQKKSEREMQL 306
Query: 178 --------------DVGANIFIGNLD---------------------PEIMRDPDTGNSK 202
+ G N+++ NLD ++MRD + G +K
Sbjct: 307 KEKFEKSNKETADKNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRDSN-GVNK 365
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
G F+ + S E + ++ AM+G+ + ++P+ V+ A +K+ + R
Sbjct: 366 GSGFVAFKSSEDASRALVAMNGKMVGSKPLYVALAQRKEERRAR 409
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 122/266 (45%), Gaps = 56/266 (21%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
++++YVG L +VS++ + F + GPV++ + +D T+ GYG++ F + A+ A+
Sbjct: 12 NSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQAL 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+++N L G+PIR+ + G NIFI NLD +++K LYDTFS FG IL
Sbjct: 72 EVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCK 131
Query: 153 ----------------------------KIMNMI-----KLYGKPIRVNKASSHQKNLDV 179
KI NMI GK I + S + +
Sbjct: 132 IVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKF 191
Query: 180 GANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N PE +M+D + G SKGF F+ + + ++ ++
Sbjct: 192 N-NLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSE-GKSKGFGFVCFLDPDHAENAV 249
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD 245
MHG+ + R + + A +K+ + +
Sbjct: 250 KTMHGKEIEGRALYCARAQRKEERQE 275
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 144/364 (39%), Gaps = 106/364 (29%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + +++ F G +++ + D Q+ +GYGF+ F EE A+ A
Sbjct: 99 GKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQS-KGYGFVHFEKEECAERA 157
Query: 93 I-KIMNMI-----KLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFG 146
I KI NMI GK I + S + + N++I N PE D + L + F+ FG
Sbjct: 158 IEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFN-NLYIKNFPPETDNEKLKEMFNEFG 216
Query: 147 VILQTPKIM----------------------NMIK-LYGKPI--------RVNKASSHQK 175
I ++ +M N +K ++GK I R + Q+
Sbjct: 217 EI-KSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQE 275
Query: 176 NLD---------------VGANIFIGNLD--------------------PEIMRDPDTGN 200
L + N+++ NLD ++M+D +
Sbjct: 276 ELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANN-R 334
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE----RLLA 256
SKGF F+ +A+ E + ++ M+G + ++P+ V+ A +K+ DR E R+
Sbjct: 335 SKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKE---DRRAKLIEEHQQRMAQ 391
Query: 257 AQNPLSQA-------DRPHQLFADA---------PPPAPLPPPPP-------PINIMGLP 293
+NP++ PH F A P A L P P I GLP
Sbjct: 392 YRNPVASMIPAVPGHAAPHSFFPPAFQQTQRFYHPSGAVLSSQPRWNRAAGIPAQIGGLP 451
Query: 294 PPPP 297
PP
Sbjct: 452 NRPP 455
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 64/163 (39%), Gaps = 48/163 (29%)
Query: 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVIL----------------------------QT 151
+ +++++G+L P V + L FS G +L Q
Sbjct: 11 MNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQA 70
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEIMRDP-------------- 196
+++N L G+PIR+ + G NIFI NLD I +
Sbjct: 71 LEVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSC 130
Query: 197 -----DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234
+ G SKG+ F+++ E ++ +I+ ++ + +R + V
Sbjct: 131 KIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYV 173
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 118/266 (44%), Gaps = 60/266 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 114 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNATADGEKALE 173
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 174 DLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 233
Query: 153 -------------------------------KIMNMIKLYG-----KPIRVNKASSHQKN 176
++N K+Y K R +K + N
Sbjct: 234 AQDENGNSKGYGFVHYETDEAAANAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKAN 293
Query: 177 LDVGANIFIGNLDPEIMRD-------------------PDTGNSKGFAFINYASFEASDA 217
N+++ N+ E+ + D G S+GF F+N+ + EA+
Sbjct: 294 F---TNVYVKNIPAEVTDEEFRELFAKYGDVTSSSLARSDEGKSRGFGFVNFTTHEAASK 350
Query: 218 SIDAMHGQYLCNRPISVSYAFKKDSK 243
+++ ++G+ + + V A KK +
Sbjct: 351 AVEELNGKDFRGQELYVGRAQKKHER 376
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 124/288 (43%), Gaps = 33/288 (11%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV + +V++ ELF + G V + + + ++ +G+GF+ F E A A++ +
Sbjct: 297 VYVKNIPAEVTDEEFRELFAKYGDVTSSSLARSDEGKS-RGFGFVNFTTHEAASKAVEEL 355
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N G+ + V +A H++ ++ G N++I NL +VD+ L
Sbjct: 356 NGKDFRGQELYVGRAQKKHEREEELRRSYEAARQEKANKYQGVNLYIKNLGDDVDDDKLR 415
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS +G I + K+M + K ++K + E G
Sbjct: 416 QMFSEYGPIT-SAKVMR-DSVVESAAEDEKDKENKKEDEEEKEGETAEKKAETKEKRKLG 473
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA--AERLLAA 257
SKGF F+ +++ + + ++ M+ + + N+P+ V+ A +KD + + ++ A L
Sbjct: 474 KSKGFGFVCFSNPDDATKAVTEMNQRMIDNKPLYVALAQRKDVRKSQLEASIQARNQLRM 533
Query: 258 QNPLSQADRPHQL------FADAPPPAPLPPP-----PPPINIMGLPP 294
Q +QA P Q +A P +PP P MG+PP
Sbjct: 534 QQAAAQAGIPQQFMQQPVYYAPGQQPGFMPPAGGRGMPFAQGAMGIPP 581
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 123/275 (44%), Gaps = 59/275 (21%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
++++YVG L +VS++ + F + GPV++ + +D T+ GYG++ F + A+ A+
Sbjct: 12 NSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQAL 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+++N L G+PIR+ + G NIFI NLD +++K LYDTFS FG IL
Sbjct: 72 EVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCK 131
Query: 153 ----------------------------KIMNMI-----KLYGKPIRVNKASSHQKNLDV 179
KI NMI GK I + S + +
Sbjct: 132 IVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKF 191
Query: 180 GANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N PE +M+D + G SKGF F+ + + ++ ++
Sbjct: 192 N-NLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSE-GKSKGFGFVCFLDPDHAENAV 249
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
MHG+ + R + Y + K +R +RL
Sbjct: 250 KTMHGKEIEGRAL---YCARAQRKEERQEELKQRL 281
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 144/364 (39%), Gaps = 106/364 (29%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + +++ F G +++ + D Q+ +GYGF+ F EE A+ A
Sbjct: 99 GKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQS-KGYGFVHFEKEECAERA 157
Query: 93 I-KIMNMI-----KLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFG 146
I KI NMI GK I + S + + N++I N PE D + L + F+ FG
Sbjct: 158 IEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFN-NLYIKNFPPETDNEKLKEMFNEFG 216
Query: 147 VILQTPKIM----------------------NMIK-LYGKPI--------RVNKASSHQK 175
I ++ +M N +K ++GK I R + Q+
Sbjct: 217 EI-KSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQE 275
Query: 176 NLD---------------VGANIFIGNLD--------------------PEIMRDPDTGN 200
L + N+++ NLD ++M+D +
Sbjct: 276 ELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANN-R 334
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE----RLLA 256
SKGF F+ +A+ E + ++ M+G + ++P+ V+ A +K+ DR E R+
Sbjct: 335 SKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKE---DRRAKLIEEHQQRMAQ 391
Query: 257 AQNPLSQA-------DRPHQLFADA---------PPPAPLPPPPP-------PINIMGLP 293
+NP++ PH F A P A L P P I GLP
Sbjct: 392 YRNPVASMIPAVPGHAAPHSFFPPAFQQTQRFYHPSGAVLSSQPRWNRAAGIPAQIGGLP 451
Query: 294 PPPP 297
PP
Sbjct: 452 NRPP 455
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 64/163 (39%), Gaps = 48/163 (29%)
Query: 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVIL----------------------------QT 151
+ +++++G+L P V + L FS G +L Q
Sbjct: 11 MNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQA 70
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEIMRDP-------------- 196
+++N L G+PIR+ + G NIFI NLD I +
Sbjct: 71 LEVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSC 130
Query: 197 -----DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234
+ G SKG+ F+++ E ++ +I+ ++ + +R + V
Sbjct: 131 KIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYV 173
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 127/279 (45%), Gaps = 57/279 (20%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ ++YVG L+ V E +++LF Q PVV+ + +D+ T GY ++ F +DA A+
Sbjct: 32 NRSLYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAKAM 91
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+++N L GKPIR+ + G AN+FI NLD ++D K LY+TF++FG +L
Sbjct: 92 EVLNFTPLNGKPIRIMFSHRDPTTRRSGHANVFIKNLDTKIDNKALYETFASFGPVLSCK 151
Query: 153 KIMN---MIKLYG------------KPIRVNKASSHQKNLDVG----------------- 180
++ K YG R+N + + + VG
Sbjct: 152 VAVDNNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREVYVGPFVRRLERIEANGSPKF 211
Query: 181 ANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASID 220
N+++ NL +M+D + G S+GF F+N+ S +++ A+++
Sbjct: 212 TNVYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQN-GKSRGFGFVNFQSPDSAAAAVE 270
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
++G ++ V Y + KG+R + +N
Sbjct: 271 KLNGMTFSDK---VWYVGRAQRKGEREAELKAKFEQERN 306
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 112/276 (40%), Gaps = 69/276 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV L + S+ + ++F G + + + KD+ ++ +G+GF+ F + A A++ +
Sbjct: 214 VYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKS-RGFGFVNFQSPDSAAAAVEKL 272
Query: 97 NMIKLYGKPIRVNKAS-------------SHQKNLDV----GANIFIGNLDPEVDEKLLY 139
N + K V +A ++N AN+++ NL +DE+ L
Sbjct: 273 NGMTFSDKVWYVGRAQRKGEREAELKAKFEQERNSRYEKMKAANLYLKNLGDTIDEERLK 332
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ FS FG I K+M LD + G
Sbjct: 333 ELFSEFGSITSC-KVM--------------------------------LDQQ-------G 352
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL----- 254
SKG F+ +++ E + ++ M+G+ + +P+ V+ A +++ + R + ++
Sbjct: 353 LSKGSGFVAFSTPEEASRALSEMNGKMIGKKPLYVAIAQRREERMARLQAHFSQIQAPGL 412
Query: 255 ------LAAQNPLSQADRPHQLFADAPPPAPLPPPP 284
L +P + PHQL+ P +PP P
Sbjct: 413 PTLPSGLPGYHPGTPRLAPHQLYFGQGTPGMMPPQP 448
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 122/266 (45%), Gaps = 56/266 (21%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
++++YVG L +VS++ + F + GPV++ + +D T+ GYG++ F + A+ A+
Sbjct: 12 NSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQAL 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+++N L G+PIR+ + G NIFI NLD +++K LYDTFS FG IL
Sbjct: 72 EVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCK 131
Query: 153 ----------------------------KIMNMI-----KLYGKPIRVNKASSHQKNLDV 179
KI NMI GK I + S + +
Sbjct: 132 IVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKF 191
Query: 180 GANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N PE +M+D + G SKGF F+ + + ++ ++
Sbjct: 192 N-NLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSE-GKSKGFGFVCFLDPDHAENAV 249
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD 245
MHG+ + R + + A +K+ + +
Sbjct: 250 KTMHGKEIEGRALYCARAQRKEERQE 275
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 144/364 (39%), Gaps = 106/364 (29%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + +++ F G +++ + D Q+ +GYGF+ F EE A+ A
Sbjct: 99 GKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQS-KGYGFVHFEKEECAERA 157
Query: 93 I-KIMNMI-----KLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFG 146
I KI NMI GK I + S + + N++I N PE D + L + F+ FG
Sbjct: 158 IEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFN-NLYIKNFPPETDNEKLKEMFNEFG 216
Query: 147 VILQTPKIM----------------------NMIK-LYGKPI--------RVNKASSHQK 175
I ++ +M N +K ++GK I R + Q+
Sbjct: 217 EI-KSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQE 275
Query: 176 NLD---------------VGANIFIGNLD--------------------PEIMRDPDTGN 200
L + N+++ NLD ++M+D +
Sbjct: 276 ELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANN-R 334
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE----RLLA 256
SKGF F+ +A+ E + ++ M+G + ++P+ V+ A +K+ DR E R+
Sbjct: 335 SKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKE---DRRAKLIEEHQQRMAQ 391
Query: 257 AQNPLSQA-------DRPHQLFADA---------PPPAPLPPPPP-------PINIMGLP 293
+NP++ PH F A P A L P P I GLP
Sbjct: 392 YRNPVASMIPAVPGHAAPHSFFPPAFQQTQRFYHPSGAVLSSQPRWNRAAGIPAQIGGLP 451
Query: 294 PPPP 297
PP
Sbjct: 452 NRPP 455
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 64/163 (39%), Gaps = 48/163 (29%)
Query: 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVIL----------------------------QT 151
+ +++++G+L P V + L FS G +L Q
Sbjct: 11 MNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQA 70
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEIMRDP-------------- 196
+++N L G+PIR+ + G NIFI NLD I +
Sbjct: 71 LEVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSC 130
Query: 197 -----DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234
+ G SKG+ F+++ E ++ +I+ ++ + +R + V
Sbjct: 131 KIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYV 173
>gi|392355792|ref|XP_228576.4| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Rattus norvegicus]
Length = 456
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 115/233 (49%), Gaps = 48/233 (20%)
Query: 26 GGGESGDGD---ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIE 82
GG + G+ D A++YVG L +V+E++++E F +GP++++ + +D+VT+ GY ++
Sbjct: 246 GGSDDGNPDFPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVN 305
Query: 83 FMGEEDADYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYD 140
+ DA A++ MN + G+P+R+ ++ + VG N+FI NL +D K LY+
Sbjct: 306 YQQPVDAKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVG-NVFIKNLGKTIDNKALYN 364
Query: 141 TFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200
FSAFG IL K + +K
Sbjct: 365 IFSAFGNILSC-----------------KVACDEK------------------------G 383
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
KG+ F+++ E+++ +IDA++G +L R I V + K+ + +R A +
Sbjct: 384 PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 436
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 123/269 (45%), Gaps = 58/269 (21%)
Query: 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDAD 90
G+ A++YVG L+ V+E L++E+F G V ++ + +D VT+ GY ++ F+ +D +
Sbjct: 47 GETSASLYVGELNTSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFVKFDDGE 106
Query: 91 YAIKIMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
AI+ +N + G+P R+ + S ++N + NIFI NL P +D K L+DTFSAFG
Sbjct: 107 QAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGE--GNIFIKNLHPAIDNKALHDTFSAFGR 164
Query: 148 ILQTPKIMNMI---KLYG------------KPIRVNKASSHQKNLDVG------------ 180
IL + + K +G VN + + + VG
Sbjct: 165 ILSCKVATDELGNSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKKDRESKF 224
Query: 181 -------ANIFIGNLDPE-------------------IMRDPDTGNSKGFAFINYASFEA 214
N+F+ NL PE + G SKGF F+N+ +
Sbjct: 225 EEMKANFTNVFVKNLAPEYTDQELKELFSAYGPITSSYLEKDLEGKSKGFGFVNFDNHND 284
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ ++D ++ + + +PI V A KK +
Sbjct: 285 AVKAVDELNNKEIAGQPIYVGRAQKKRER 313
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 103/244 (42%), Gaps = 62/244 (25%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++V L + ++ + ELF GP+ + ++ KD + +G+GF+ F DA A+
Sbjct: 232 TNVFVKNLAPEYTDQELKELFSAYGPITSSYLEKD-LEGKSKGFGFVNFDNHNDAVKAVD 290
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLD-----------------VGANIFIGNLDPEVDEKL 137
+N ++ G+PI V +A ++ ++ G N+FI NLD +D +
Sbjct: 291 ELNNKEIAGQPIYVGRAQKKRERMEELRRQYEATKLEKLSKYQGVNLFIKNLDDTIDSEK 350
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + F FG I +M D +
Sbjct: 351 LENEFKPFGNITSA---------------------------------------RVMVD-E 370
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAA 257
G SKGF F+ ++S E + +I M+ + + +P+ V+ A +KD + S E+ + A
Sbjct: 371 QGKSKGFGFVCFSSPEEATKAITEMNQRMVEGKPLYVALAQRKDVR----RSQLEQQIQA 426
Query: 258 QNPL 261
+N +
Sbjct: 427 RNQM 430
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 125/277 (45%), Gaps = 56/277 (20%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
++++YVG L +VS++ + F + GPV++ + +D T+ GYG++ F + A+ A+
Sbjct: 12 NSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQAL 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+++N L G+PIR+ + G NIFI NLD +++K LYDTFS FG IL
Sbjct: 72 EVLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCK 131
Query: 153 ----------------------------KIMNMI-----KLYGKPIRVNKASSHQKNLDV 179
KI NMI GK I + S + +
Sbjct: 132 IVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKF 191
Query: 180 GANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N+++ N PE +M+D + G SKGF F+ Y + ++ ++
Sbjct: 192 N-NLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKD-NEGKSKGFGFVCYLDPDHAENAV 249
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLA 256
MHG+ + R + + A +K+ + + E+ A
Sbjct: 250 RTMHGKEIEGRVLYCARAQRKEERQEELKQKIEKQRA 286
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 121/283 (42%), Gaps = 76/283 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + +++ F G +++ + D Q+ +GYGF+ F EE A+ A
Sbjct: 99 GKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQS-KGYGFVHFEKEECAERA 157
Query: 93 I-KIMNMI-----KLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFG 146
I KI NMI GK I + S + + N+++ N PE D + L + FS FG
Sbjct: 158 IEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFN-NLYVKNFPPETDNEKLKEMFSEFG 216
Query: 147 VILQTPKIM----------------------NMIK-LYGKPI--RV-------------- 167
I ++ +M N ++ ++GK I RV
Sbjct: 217 EI-KSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQE 275
Query: 168 -------NKASSHQKNLDVGANIFIGNLD--------------------PEIMRDPDTGN 200
+ + Q N + N+++ NLD ++M+D +
Sbjct: 276 ELKQKIEKQRAERQSNYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANN-R 334
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ +A+ E + ++ M+G + ++P+ V+ A +K+ +
Sbjct: 335 SKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDR 377
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 64/163 (39%), Gaps = 48/163 (29%)
Query: 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVIL----------------------------QT 151
+ +++++G+L P V + L FS G +L Q
Sbjct: 11 MNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQA 70
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEIMRDP-------------- 196
+++N L G+PIR+ + G NIFI NLD I +
Sbjct: 71 LEVLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSC 130
Query: 197 -----DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234
+ G SKG+ F+++ E ++ +I+ ++ + +R + V
Sbjct: 131 KIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYV 173
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 102/202 (50%), Gaps = 43/202 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E+ ++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLPQDVNESGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN L KPIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 62 TMNFDLLRNKPIRIMWSQRDPSLRRSGVG-NVFIKNLDRAIDNKAIYDTFSAFGNILSC- 119
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
K ++ +K GNSKG+ F+++ +
Sbjct: 120 ----------------KVATDEK-----------------------GNSKGYGFVHFETE 140
Query: 213 EASDASIDAMHGQYLCNRPISV 234
EA++ SID ++G L + + V
Sbjct: 141 EAANTSIDKVNGMLLNGKKVYV 162
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/284 (20%), Positives = 116/284 (40%), Gaps = 76/284 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D + +GYGF+ F EE A+ +
Sbjct: 88 GVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNS-KGYGFVHFETEEAANTS 146
Query: 93 IKIMNMIKLYGKPIRVNK---ASSHQKNLDVGA----NIFIGNLDPEVDEKLLYDTFSAF 145
I +N + L GK + V K +K L A N+++ N + D++ L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 146 GVILQTPKIMN-----------------------MIKLYGKPI---------RVNKASSH 173
G I + K+M+ + L GK + R K +
Sbjct: 207 GKIT-SYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAER 265
Query: 174 QKNLD--------------VGANIFIGNLD--------------------PEIMRDPDTG 199
Q+ L G N+++ NLD ++M D + G
Sbjct: 266 QQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-G 324
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ + + + ++ ++G+ + ++P+ V+ A +K+ +
Sbjct: 325 RSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEER 368
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 107/220 (48%), Gaps = 43/220 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLHSDITEAMLFEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPSDAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 62 TMNFDMIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKAIDNKAMYDTFSAFGNILSC- 119
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D + G SKG+ F+++ +
Sbjct: 120 --------------------------------------KVAQD-ENGASKGYGFVHFETE 140
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
EA++ SI+ ++G L + + V + + G A+
Sbjct: 141 EAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAK 180
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 97/234 (41%), Gaps = 60/234 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GE +YV + S+ ++ ++F + G + + H + + +G+GF+ F +
Sbjct: 176 GEKAKLFTNVYVKNFGEDFSDEMLRDMFEKYGRITS-HKVMYKEDGSSRGFGFVAFEDPD 234
Query: 88 DADYAIKIMNMIKLY-GKPI---RVNKASSHQKNLDV--------------GANIFIGNL 129
A+ A +N +L GKP+ R K + QK L G N+++ NL
Sbjct: 235 AAERACLELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNL 294
Query: 130 DPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLD 189
D +D++ L F+ FG I + K+M
Sbjct: 295 DDTIDDERLRKEFAPFGTIT-SAKVM---------------------------------- 319
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 320 ------LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 367
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 121/262 (46%), Gaps = 54/262 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG LD V+++ +++LF Q G VV+V + +D T+ GYG++ + +DA A+
Sbjct: 34 TSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALD 93
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
++N L +PIR+ + G NIFI NLD +D K L+DTFS+FG IL
Sbjct: 94 VLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKV 153
Query: 153 --------------------------KIMNMIKLYGKPIRVNKASSHQKNLDVG-----A 181
+ +N + L K + V Q+ G
Sbjct: 154 AVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTGDRAKFN 213
Query: 182 NIFIGNL-----DPE---------------IMRDPDTGNSKGFAFINYASFEASDASIDA 221
N+F+ NL D E +MRD D G SK F F+N+ S + + +++A
Sbjct: 214 NVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGD-GKSKCFGFVNFESTDDAARAVEA 272
Query: 222 MHGQYLCNRPISVSYAFKKDSK 243
++G+ + ++ V A KK +
Sbjct: 273 LNGKKIDDKEWYVGKAQKKSER 294
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 128/332 (38%), Gaps = 82/332 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + + F G +++ + D Q+ +GYGF++F EE A A
Sbjct: 120 GQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQS-KGYGFVQFDTEEAAQKA 178
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG-----ANIFIGNLDPEVDEKLLYDTFSAFGV 147
I+ +N + L K + V Q+ G N+F+ NL + L TF FG
Sbjct: 179 IEKLNGMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFGT 238
Query: 148 ILQT---------PKIMNMIK-------------LYGKPI--------RVNKASSHQKNL 177
I K + L GK I + K S + L
Sbjct: 239 ITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHEL 298
Query: 178 DV--------------GANIFIGNLDPEI--------------------MRDPDTGNSKG 203
+ GAN+++ NLD I MRDP+ G S+G
Sbjct: 299 KIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPN-GVSRG 357
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F+ +++ E + ++ M+G+ + ++P+ V+ A +K+ + R + ++ P S
Sbjct: 358 SGFVAFSTPEEASRALLEMNGKMVASKPLYVTLAQRKEDRRARLQAQFAQMRPVSMPPSV 417
Query: 264 ADR-----------PHQLFADAPPPAPLPPPP 284
A R Q+F PPA +P P
Sbjct: 418 APRMPMYPPGGPGMGQQIFYGQGPPAIIPSQP 449
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 121/264 (45%), Gaps = 55/264 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 55 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 114
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 115 DLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 174
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + + K K ++ A
Sbjct: 175 AQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKAN 234
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N+++ N+D + + RD ++G S+GF F+N+ S + + A++
Sbjct: 235 FTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAV 294
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+A++ + + + V A KK +
Sbjct: 295 EALNDKDFKGQKLYVGRAQKKHER 318
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 108/242 (44%), Gaps = 40/242 (16%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV +D +E +LF + G + + + +D + +G+GF+ F ++A A++ +
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 97 NMIKLYGKPIRVNKAS-SHQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N G+ + V +A H++ ++ G N++I NL ++D++ L
Sbjct: 298 NDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 357
Query: 140 DTFSAFGVILQTPKIM------------------NMIKLYGKPIRVNKASSHQKNLDVGA 181
+ FS++G I + K+M + + ++A + +N D
Sbjct: 358 ELFSSYGTIT-SAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKE 416
Query: 182 NIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
N + + G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD
Sbjct: 417 NK----AESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKD 472
Query: 242 SK 243
+
Sbjct: 473 VR 474
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 121/264 (45%), Gaps = 55/264 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 55 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 114
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 115 DLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 174
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + + K K ++ A
Sbjct: 175 AQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKAN 234
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N+++ N+D + + RD ++G S+GF F+N+ S + + A++
Sbjct: 235 FTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAV 294
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+A++ + + + V A KK +
Sbjct: 295 EALNDKDFKGQKLYVGRAQKKHER 318
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 108/242 (44%), Gaps = 40/242 (16%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV +D +E +LF + G + + + +D + +G+GF+ F ++A A++ +
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 97 NMIKLYGKPIRVNKAS-SHQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N G+ + V +A H++ ++ G N++I NL ++D++ L
Sbjct: 298 NDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 357
Query: 140 DTFSAFGVILQTPKIM------------------NMIKLYGKPIRVNKASSHQKNLDVGA 181
+ FS++G I + K+M + + ++A + +N D
Sbjct: 358 ELFSSYGTIT-SAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKE 416
Query: 182 NIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
N + + G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD
Sbjct: 417 NK----AESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKD 472
Query: 242 SK 243
+
Sbjct: 473 VR 474
>gi|255080002|ref|XP_002503581.1| predicted protein [Micromonas sp. RCC299]
gi|226518848|gb|ACO64839.1| predicted protein [Micromonas sp. RCC299]
Length = 597
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 107/215 (49%), Gaps = 46/215 (21%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++Y G LD +E ++ELF GPVV++ + +D +T+ GY ++ F DA AI +
Sbjct: 21 SLYCGDLDSNCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGADAARAIDV 80
Query: 96 MNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + GKPIR+ ++ + VG NIFI NLD E+D K LYDTFS FG I+ + K
Sbjct: 81 LNFNVVNGKPIRIMYSQRDPALRKSGVG-NIFIKNLDKEIDNKALYDTFSQFGNIV-SAK 138
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+ A+ Q G SKG+ F+ +A E
Sbjct: 139 V---------------AADGQ------------------------GVSKGYGFVQFAEQE 159
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
A+ +ID ++G L ++ + V F++ +G+R G
Sbjct: 160 AAQQAIDKVNGMLLNDKQVYVG-PFQR--RGERGG 191
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 130/331 (39%), Gaps = 83/331 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD ++ +++ F Q G +V+ + D +GYGF++F +E A A
Sbjct: 106 GVGNIFIKNLDKEIDNKALYDTFSQFGNIVSAKVAADG-QGVSKGYGFVQFAEQEAAQQA 164
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAFG 146
I +N + L K + V Q+ + G N+++ NL VDE L + F A G
Sbjct: 165 IDKVNGMLLNDKQVYVG---PFQRRGERGGGPTTFNNVYVKNLHESVDEDKLKEVFGAVG 221
Query: 147 -----VILQ-----------------------TPKIMNMIKLYGKP---IRVNKASSHQK 175
VI++ K+ K+ K R K + +
Sbjct: 222 KLTSVVIMKDGEGKSKGFGFVCFEESEAASEAVEKLDGYDKIEDKAWVVCRAQKKAEREA 281
Query: 176 NLD--------------VGANIFIGNLD--------------------PEIMRDPDTGNS 201
L GAN++I NL+ +MRD +G S
Sbjct: 282 ELKAKFDAERRERLEKMAGANLYIKNLEDTVDDAKLRELFAEFGTITSCRVMRDA-SGAS 340
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR-HGSAAERLLA---- 256
+G AF+ ++S + + ++ M+G+ +P+ V+ A +K+ + R A+R +A
Sbjct: 341 RGSAFVAFSSADEATRAVTEMNGKMAGTKPLYVALAQRKEDRRMRLQAQFAQRAVANGGM 400
Query: 257 --AQNPLSQADRPHQLFADAPPPAPLPPPPP 285
+ P ++ PPP + PP P
Sbjct: 401 PGMPYGMPPPGVPGAMYYGQPPPGVMGPPQP 431
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 119/264 (45%), Gaps = 55/264 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A+
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALD 120
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 121 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 180
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 181 AQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 240
Query: 182 --NIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASDASI 219
NI++ N+ ++ RD +TG S+GF F+N+ S E + ++
Sbjct: 241 FTNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDASKAV 300
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ ++ + + + V A KK +
Sbjct: 301 EELNEKEFHGQNLYVGRAQKKHER 324
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 126/290 (43%), Gaps = 32/290 (11%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
IYV + V++ LF + G V + + +D+ T +G+GF+ F EDA A++
Sbjct: 243 NIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVEE 302
Query: 96 MNMIKLYGKPIRVNKAS-SHQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N + +G+ + V +A H++ ++ G N++I NLD EVD+ L
Sbjct: 303 LNEKEFHGQNLYVGRAQKKHEREEELRRSYEAARQEKASKYQGVNLYIKNLDDEVDDDKL 362
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNL---DVGANIFIGNLDPEIMRD 195
FS FG I + + A+ ++N+ + A D + +
Sbjct: 363 RQLFSEFGPITSAKVMRETLAEGADEPEAKDAADAKENVKEDEEAAKTEGDEGDAKADKK 422
Query: 196 PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLL 255
P G SKGF F+ + + + + ++ M+ + + +P+ V+ A +KD + ++ E +
Sbjct: 423 PKLGKSKGFGFVCFGNPDDATKAVAEMNQRMVNGKPLYVALAQRKDVRKNQ----LEASI 478
Query: 256 AAQNPLSQADRPH-----QLFADAP---PPAPLPPPPPPINIMGLPPPPP 297
A+N L Q F AP P P PP G+P P P
Sbjct: 479 QARNQLRMQQAAAAAGMPQQFMQAPVFYGPGSQPGFMPPAGGRGMPFPQP 528
>gi|302811197|ref|XP_002987288.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
gi|302815025|ref|XP_002989195.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300143095|gb|EFJ09789.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300144923|gb|EFJ11603.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
Length = 567
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 121/260 (46%), Gaps = 52/260 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+YVG LD V+E ++++F Q G V++V + +D VT+ GY ++ + +DA AI+
Sbjct: 15 TALYVGDLDPSVNEAQIFDIFKQIGNVMSVRLCRDMVTKRSLGYAYVNYNNTQDASRAIE 74
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + + GKP+R+ + G+ N+F+ NLD +D K L+D FS +G IL
Sbjct: 75 ELNFMPVNGKPVRIMFSYRDPSIRKSGSGNLFVKNLDKSIDNKALHDLFSPYGKILSCKI 134
Query: 153 --KIMNMIKLYG------------KPIRVNKASSHQKNLDVG---------------ANI 183
+ N+ K +G ++N + H K L VG N+
Sbjct: 135 ALDVSNVSKGHGFVQFDTEDAAHTAIEKINGTTLHDKQLFVGPFVRRQERDPPASKFNNV 194
Query: 184 FIGNLDPEIMRDPDT--------------------GNSKGFAFINYASFEASDASIDAMH 223
F+ NL EI D D G SK F F+N+ + E + +++ +H
Sbjct: 195 FVKNLS-EITTDEDLQKLFGVFGPISSAVVMKEVDGKSKCFGFVNFENPEDAVKAVEDLH 253
Query: 224 GQYLCNRPISVSYAFKKDSK 243
G ++ + VS A KK+ +
Sbjct: 254 GTTFQDKELYVSRAQKKNER 273
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 101/223 (45%), Gaps = 57/223 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++V L + ++ + +LF GP+ + + K+ V + +GF+ F EDA A++ +
Sbjct: 194 VFVKNLSEITTDEDLQKLFGVFGPISSAVVMKE-VDGKSKCFGFVNFENPEDAVKAVEDL 252
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDVGA---------------NIFIGNLDPEVDEKLLYD 140
+ K + V++A +++ ++ A N+++ NLD +D++ L D
Sbjct: 253 HGTTFQDKELYVSRAQKKNEREAELKAKFEHERKDTEDKSPTNLYLKNLDDGIDDEKLKD 312
Query: 141 TFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200
FSAFG + ++MRDP G+
Sbjct: 313 MFSAFGNVTSC---------------------------------------KVMRDP-LGH 332
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKG F+ +++ +A+ ++ M+G+ + ++P+ V+ A KK+ +
Sbjct: 333 SKGSGFVAFSTSDAALRAVAQMNGKMIGSKPLYVAMAQKKEER 375
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 117/238 (49%), Gaps = 51/238 (21%)
Query: 12 STPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRV 71
STP + S+T+ G A++YVG L+ V+E +++E+F G V ++ + +D V
Sbjct: 31 STP---ASSETEDSQGESVAVTSASLYVGELNPSVNEAVLYEIFSPLGQVSSIRVCRDAV 87
Query: 72 TQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGN 128
T+ GY ++ + ED + A++ +N + G+P R+ + S ++N D NIFI N
Sbjct: 88 TKKSLGYAYVNYHKHEDGERALEQLNYSLIDGRPCRIMWSQRDPSLRRNGD--GNIFIKN 145
Query: 129 LDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNL 188
L P++D K L+DTFSAFG IL
Sbjct: 146 LHPDIDNKALHDTFSAFGRILSC------------------------------------- 168
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
++ D + G SK F F++Y + EA+DA+I+ ++G L +R + V K SK DR
Sbjct: 169 --KVATD-EHGRSKCFGFVHYETAEAADAAIENVNGMSLNDREVFVG---KHISKKDR 220
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/301 (19%), Positives = 124/301 (41%), Gaps = 77/301 (25%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+GD I++ L + + + F G +++ + D ++ + +GF+ + E AD
Sbjct: 136 NGDGNIFIKNLHPDIDNKALHDTFSAFGRILSCKVATDEHGRS-KCFGFVHYETAEAADA 194
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNL----DVGAN---IFIGNLDPEVDEKLLYDTFSA 144
AI+ +N + L + + V K S + + ++ AN +F+ N + E L F
Sbjct: 195 AIENVNGMSLNDREVFVGKHISKKDRVAKFEEMKANFTNVFVKNFGSDFTEAELAAMFEP 254
Query: 145 FGVI---------------------------LQTPKIMNMIKLYGKPIRVNKASSHQKNL 177
+G I ++ + +N ++ G+ I V +A ++ +
Sbjct: 255 YGKITSLYFEKDSEGKSKGFGFINFENHDAAVKAVEELNDKEVNGQKIYVGRAQKKRERI 314
Query: 178 D-----------------VGANIFIGNLD--------------------PEIMRDPDTGN 200
+ G N+F+ NLD ++M D +TG
Sbjct: 315 EELKKQYETTRLEKLSKYQGVNLFVKNLDDSLTSEMLEEEFKPFGTITSAKVMVD-ETGK 373
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNP 260
SKGF F+ +++ E + +I M+ + + +P+ V+ A +KD + S E+ + A+N
Sbjct: 374 SKGFGFVCFSAPEEATKAITEMNQRMVLGKPLYVALAQRKDVR----RSQLEQQIQARNQ 429
Query: 261 L 261
+
Sbjct: 430 M 430
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 127/282 (45%), Gaps = 56/282 (19%)
Query: 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDAD 90
G + ++YVG L+ V+E +++E+F G V ++ + +D VT+ GY ++ F+ ED++
Sbjct: 76 GSVNTSLYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDSE 135
Query: 91 YAIKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
A++ +N + G+P R+ + G NIFI NLD +D K L+DTF+AFG IL
Sbjct: 136 RALEQLNYTPIRGRPCRIMWSQRDPGQRRAGQGNIFIKNLDEAIDNKALHDTFAAFGKIL 195
Query: 150 QTP--------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDV 179
K +N + L K + ++K K +
Sbjct: 196 SCKVASNEHGSLGYGFVHYESNDAAEAAIKHVNGMLLNDKKVYVGHHISKKDRQAKIEEA 255
Query: 180 GA---NIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDA 217
A N+++ NLDP + ++ G S+GF F+N++ E +
Sbjct: 256 RAHYTNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQEGKSRGFGFVNFSEHEQAAK 315
Query: 218 SIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
+++ ++ + + + A KK + + A E AA+N
Sbjct: 316 AVEELNDTEFHGQKLFLGRAQKKSEREEELRRAYE---AAKN 354
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 104/236 (44%), Gaps = 61/236 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV LD V++ +LF + G + + + D+ ++ +G+GF+ F E A A++ +
Sbjct: 262 VYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQEGKS-RGFGFVNFSEHEQAAKAVEEL 320
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N + +G+ + R K S ++ L G N++I NL + D++ L
Sbjct: 321 NDTEFHGQKLFLGRAQKKSEREEELRRAYEAAKNEKLSKYQGVNLYIKNLPEDFDDERLQ 380
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ F+ FG ++MR P TG
Sbjct: 381 EEFAPFGTTTSA---------------------------------------KVMRTP-TG 400
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLL 255
S+GF F+ Y++ E ++ ++ M+G+ + NRP+ V+ A +KD RH A +++
Sbjct: 401 ASRGFGFVCYSAPEEANKAVAEMNGKMIENRPLYVALAQRKDV---RHQQLAAQMM 453
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 121/264 (45%), Gaps = 55/264 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 55 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 114
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 115 DLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 174
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + + K K ++ A
Sbjct: 175 AQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKAN 234
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N+++ N+D + + RD ++G S+GF F+N+ S + + A++
Sbjct: 235 FTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAV 294
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+A++ + + + V A KK +
Sbjct: 295 EALNDKDFKGQKLYVGRAQKKHER 318
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 108/242 (44%), Gaps = 40/242 (16%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV +D +E +LF + G + + + +D + +G+GF+ F ++A A++ +
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 97 NMIKLYGKPIRVNKAS-SHQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N G+ + V +A H++ ++ G N++I NL ++D++ L
Sbjct: 298 NDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 357
Query: 140 DTFSAFGVILQTPKIM------------------NMIKLYGKPIRVNKASSHQKNLDVGA 181
+ FS++G I + K+M + + ++A + +N D
Sbjct: 358 ELFSSYGTIT-SAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKE 416
Query: 182 NIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
N + + G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD
Sbjct: 417 NK----AESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKD 472
Query: 242 SK 243
+
Sbjct: 473 VR 474
>gi|339246497|ref|XP_003374882.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316971853|gb|EFV55580.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 758
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 33/239 (13%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D VT+ GY ++ + DA+ A+
Sbjct: 12 ASLYVGDLHPDVTEAMLFEKFSHAGPVLSIRVCRDAVTRRSLGYAYVNYQQTPDAERALD 71
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN ++G+PIR+ ++ + VG N+FI NLD ++D K +YDTFS FG IL
Sbjct: 72 TMNFDPVFGRPIRIMWSQRDPSLRRSGVG-NVFIKNLDKDIDHKAIYDTFSNFGNILSCK 130
Query: 153 KIMN---MIKLY---GKPI-RVNKASSHQKNLDVGANIFIGNLDPE-------------- 191
+ + K Y GK I R + + N+++ N D
Sbjct: 131 VATDENGVSKGYGYVGKFIPRAQRMREIGETTRKFTNVYVKNFDENFTDQCLVDLFSKFG 190
Query: 192 ------IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYL-CNRPISVSYAFKKDSK 243
+M++ D SKGF F+++ + E ++A++ M+ L + + V A KK +
Sbjct: 191 KIQSCVVMKEDD--KSKGFGFVSFENPEDAEAAVKEMNEYQLPSGKKLYVGRAQKKAER 247
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 63/252 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GE+ +YV D+ ++ + +LF + G + + + K+ +G+GF+ F E
Sbjct: 159 GETTRKFTNVYVKNFDENFTDQCLVDLFSKFGKIQSCVVMKE--DDKSKGFGFVSFENPE 216
Query: 88 DADYAIKIMNMIKL-YGKPI---RVNKASSHQKNLDV--------------GANIFIGNL 129
DA+ A+K MN +L GK + R K + Q L G N+++ NL
Sbjct: 217 DAEAAVKEMNEYQLPSGKKLYVGRAQKKAERQAELKRRYEMLKLERIQQYEGVNLYLKNL 276
Query: 130 DPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLD 189
D VD+ L F FGVI
Sbjct: 277 DDSVDDAQLRKAFEKFGVI---------------------------------------TS 297
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
++M D + G SKGF F+ ++S + + ++ M+ Q L N+P+ V+ A +K+ DR
Sbjct: 298 AKVMTD-EKGQSKGFGFVCFSSPDEATRAVSEMNNQKLGNKPLYVALAQRKE---DRKAQ 353
Query: 250 AAERLLAAQNPL 261
A +L+ N L
Sbjct: 354 LASQLVQRVNAL 365
>gi|359322009|ref|XP_850457.3| PREDICTED: uncharacterized protein LOC483825 [Canis lupus
familiaris]
Length = 1009
Score = 99.0 bits (245), Expect = 2e-18, Method: Composition-based stats.
Identities = 73/264 (27%), Positives = 132/264 (50%), Gaps = 57/264 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD +V+E ++ F +GPV+++ + +D +T+ GY ++ F+ DA A+
Sbjct: 148 ASLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSLGYAYVNFLRLADAQRALD 207
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN L G+P+R+ ++ +H + VG N+FI NLD VD+K L++ FSAFG IL +
Sbjct: 208 TMNFDVLRGRPLRLMWSQRDAHLRKSGVG-NVFIKNLDRSVDDKALFERFSAFGKILSSK 266
Query: 153 KI--------------------------MNMIKLYGKPIRVNKASSHQ-KNLDVGA---- 181
+ MN +L G + V + S Q + ++ +
Sbjct: 267 VVSDERGSRGYAFVHFQEQSAADRAIEHMNGAQLRGCRLFVGRFQSRQAREAELRSRAGE 326
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D +G S+GF F+++ S EA+ ++
Sbjct: 327 FTNLYIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDA-SGRSRGFGFVSFESHEAARRAV 385
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+A++G+ + +P+ V A +K +
Sbjct: 386 EALNGRQVDGQPLFVGRAQRKAER 409
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 48/218 (22%), Positives = 93/218 (42%), Gaps = 59/218 (27%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ ++ + + +F + G ++V + D ++ +G+GF+ F E A A++ +
Sbjct: 330 LYIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDASGRS-RGFGFVSFESHEAARRAVEAL 388
Query: 97 NMIKLYGKPIRVNKASS------------HQKNLD-----VGANIFIGNLDPEVDEKLLY 139
N ++ G+P+ V +A Q+ D GA +++ NLD VDE L
Sbjct: 389 NGRQVDGQPLFVGRAQRKAERQAELRRAFEQRQQDGLRRAQGAKLYVKNLDDAVDEDRLR 448
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG + + +IMR + G
Sbjct: 449 REFSGFGAVSRV---------------------------------------KIMR--EEG 467
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
SKGF I ++S + + ++ M+G+ L ++P+S++ A
Sbjct: 468 RSKGFGLICFSSADEAARALAEMNGRVLGSKPLSIALA 505
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 118/267 (44%), Gaps = 62/267 (23%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 120
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + G N+FI NLD +D K L+DTFS FG IL
Sbjct: 121 DLNYTSIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFSQFGNILSCKV 180
Query: 150 -----------------------QTPKIMNMIKLYGKPI----------RVNKASSHQKN 176
Q K +N + L K + R +K + N
Sbjct: 181 AQDELGNSKGYGFVHYETAEAANQAIKSVNGMLLNDKKVFVGHHIAKRDRQSKLEEMKAN 240
Query: 177 LDVGANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASD 216
N++I N+D I RD + G S+GF F+N+AS E++
Sbjct: 241 F---TNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRD-ENGKSRGFGFVNFASHESAA 296
Query: 217 ASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++ ++ + + + V A KK +
Sbjct: 297 KAVEELNDKEFHGKKLYVGRAQKKHER 323
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 117/259 (45%), Gaps = 41/259 (15%)
Query: 21 QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGF 80
Q+KLE E +Y+ +D+ VS+ +LF G VV+ + +D ++ +G+GF
Sbjct: 231 QSKLE---EMKANFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRDENGKS-RGFGF 286
Query: 81 IEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS-SHQKNLDV----------------GAN 123
+ F E A A++ +N + +GK + V +A H++ ++ G N
Sbjct: 287 VNFASHESAAKAVEELNDKEFHGKKLYVGRAQKKHEREEELRRQYEAARMEKASKYQGVN 346
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM-----------NMIKLYGKPIRVNKASS 172
+++ NL +VD+ L + FS++G I + K+M N K + S
Sbjct: 347 LYVKNLTDDVDDDKLRELFSSYGTIT-SAKVMRDSAERTASPANDKDKENKKAETTEGES 405
Query: 173 HQK--------NLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHG 224
QK + + + + + + G SKGF F+ +++ + + ++ M+
Sbjct: 406 EQKAESQEKDESKEESKEETKESKETKKENKKNLGKSKGFGFVCFSNPDEASKAVSEMNQ 465
Query: 225 QYLCNRPISVSYAFKKDSK 243
+ + +P+ V+ A +KD +
Sbjct: 466 KMVNGKPLYVALAQRKDVR 484
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 108/232 (46%), Gaps = 47/232 (20%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
SG A++YVG L V+E +++E F +G ++++ + +D T+ GY +I F DA
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 90 DYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
+ A+ MN L G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG
Sbjct: 66 ERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGN 124
Query: 148 ILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFI 207
IL + D S+GF F+
Sbjct: 125 ILSCKVVC-----------------------------------------DEHGSRGFGFV 143
Query: 208 NYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
++ ++EA+ +I+ M+G L +R + V + FK S+ +R R L N
Sbjct: 144 HFETYEAAQQAINTMNGMLLNDRKVFVGH-FK--SRRERAAELGARALEFTN 192
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 140/346 (40%), Gaps = 83/346 (23%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G I++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETYE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI MN + L + + V S ++ ++GA NI++ NL +VDE+ L D
Sbjct: 150 AAQQAINTMNGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQD 209
Query: 141 TFSAFGVILQTPKIMN-----------------------MIKLYGKPI--RVNKASSHQK 175
FS FG +L K+M ++ + GK + R+ AS QK
Sbjct: 210 LFSQFGKMLSV-KVMRDSSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQK 268
Query: 176 NLDV--------------------GANIFIGNLDPEI----MRD--------------PD 197
++ G N+++ NLD I +R +
Sbjct: 269 RVERQNELKRRFEQMKQDRLSRYQGVNLYVKNLDDSIDDGKLRKEFSPYGVITSAKVMTE 328
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK----GDRHGSAAER 253
+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + +++
Sbjct: 329 GSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRVST 388
Query: 254 LLAAQNP-LSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPPS 298
+ NP L +P F A +P PP G P P+
Sbjct: 389 MRTLSNPLLGSFQQPSSYFLPA-----VPQPPAQAAYYGCGPVTPT 429
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 126/275 (45%), Gaps = 60/275 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN L G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG IL
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
Q MN + L + + V S ++ ++GA
Sbjct: 130 VACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N L ++MRD ++G+S+ F F+N+ E + ++
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
M+G+ + R + YA + + +R R
Sbjct: 249 VHMNGKEVSGRLL---YAGRAQKRVERQNELKRRF 280
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 118/286 (41%), Gaps = 73/286 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G I++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI MN + L + + V S ++ ++GA NI++ NL +VDE+ L D
Sbjct: 150 AAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQD 209
Query: 141 TFSAFGVILQTPKIMN-----------------------MIKLYGKPI--------RVNK 169
FS FG +L + K+M ++ + GK + R K
Sbjct: 210 LFSQFGKML-SVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 170 ASSHQKNLDV--------------GANIFIGNLDPEIMRD------------------PD 197
Q L G N+++ NLD I D +
Sbjct: 269 RVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE 328
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 374
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 52/186 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN L G+PIR+ ++ + VG NIFI NL+ I + D
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
D S+GF F+++ + EA+ +I+ M+G L +R + V + FK S+ +R R
Sbjct: 130 VACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FK--SRREREAELGAR 186
Query: 254 LLAAQN 259
L N
Sbjct: 187 ALEFTN 192
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 119/261 (45%), Gaps = 54/261 (20%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG L V++ +++LF Q VV+V + +D TQ GYG++ F DA AI +
Sbjct: 25 SLYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNAHDAAKAIDV 84
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQT--- 151
+N L GK IR+ + G AN+FI NLD +D K LYDTFSAFG IL
Sbjct: 85 LNFTPLNGKIIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALYDTFSAFGNILSCKVA 144
Query: 152 ------PKIMNMIKLYGKPI------RVNKASSHQKNLDVG-----------------AN 182
K ++ + ++N + K + VG N
Sbjct: 145 TDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVFVGPFLRKQDRESALSGTKFNN 204
Query: 183 IFIGNL-------DPE-------------IMRDPDTGNSKGFAFINYASFEASDASIDAM 222
+F+ NL D E +MRD D G SKGF F+N+A+ + + +++A+
Sbjct: 205 VFVKNLLDSMTEADLERIFGEYGAITSAVVMRDVD-GKSKGFGFVNFANVDDAAKAVEAL 263
Query: 223 HGQYLCNRPISVSYAFKKDSK 243
+G+ + V A KK +
Sbjct: 264 NGKNFDGKEWYVGKAQKKSER 284
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 115/274 (41%), Gaps = 69/274 (25%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
SG ++V L D ++E + +F + G + + + +D V +G+GF+ F +DA
Sbjct: 198 SGTKFNNVFVKNLLDSMTEADLERIFGEYGAITSAVVMRD-VDGKSKGFGFVNFANVDDA 256
Query: 90 DYAIKIMNMIKLYGKPIRVNKASSH-QKNLDV----------------GANIFIGNLDPE 132
A++ +N GK V KA ++ L++ G N++I NLD
Sbjct: 257 AKAVEALNGKNFDGKEWYVGKAQKKSERELELKGQHEQITKETVDKYHGTNLYIKNLDDS 316
Query: 133 VDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
V ++ L + FS FG I ++
Sbjct: 317 VGDEELMELFSEFGTITSC---------------------------------------KV 337
Query: 193 MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
MRDP+ G S+G F++++ E + ++ M+G+ + +P+ V+ A +K+ + R
Sbjct: 338 MRDPN-GISRGSGFVSFSIAEGATRALGEMNGKMVAGKPLYVALAQRKEDRRAR------ 390
Query: 253 RLLAAQNPLSQADRPHQLFADAPPPAPLPPPPPP 286
L AQ SQ+ RP + + P PL P P
Sbjct: 391 --LQAQ--FSQS-RPAAITPNVSPRMPLYPLGAP 419
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 43/220 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E ++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHADITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD ++D K +YDTFSAFG IL
Sbjct: 71 TMNFDTIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKKIDNKAMYDTFSAFGNILSC- 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D + G SKG+ F+++ +
Sbjct: 129 --------------------------------------KVAQD-EKGQSKGYGFVHFETE 149
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
E+++ SI+ ++G L + + V + + G A+
Sbjct: 150 ESANTSIEKVNGMLLNEKKVFVGRFISRKEREKELGEKAK 189
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 103/235 (43%), Gaps = 63/235 (26%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVH-MPKDRVTQTHQGYGFIEFMGE 86
GE +YV + ++E + E+F + G + + M KD ++ G+GF+ F
Sbjct: 185 GEKAKLFTNVYVKNFGEDLTEEALHEMFEKYGSITSHRVMMKDGKSR---GFGFVAFENP 241
Query: 87 EDADYAIKIMNMIKLY-GKPIRVNKASS-HQKNLDV----------------GANIFIGN 128
+ A+ A++ +N +L GK + V +A +++ +++ G N+++ N
Sbjct: 242 DAAERAVQELNAKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNLYVKN 301
Query: 129 LDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNL 188
LD +D++ L F+ +G I + K+M
Sbjct: 302 LDDTIDDERLRKEFAPYGTIT-SAKVM--------------------------------- 327
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
D G SKGF F+ +++ + + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 328 -------LDEGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVALAQRKEER 375
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 43/220 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E ++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLHSDITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD ++D K +YDTFSAFG IL
Sbjct: 62 TMNFDPIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKKIDNKAMYDTFSAFGNILSC- 119
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D + G SKG+ F+++ +
Sbjct: 120 --------------------------------------KVAQD-EKGQSKGYGFVHFETE 140
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
E+++ SI+ ++G L + + V + + G A+
Sbjct: 141 ESANTSIEKVNGMLLNEKKVYVGRFISRKEREKELGEKAK 180
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 105/235 (44%), Gaps = 63/235 (26%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVH-MPKDRVTQTHQGYGFIEFMGE 86
GE +YV + ++E + ++F + GP+ + M KD ++ G+GF+ F
Sbjct: 176 GEKAKLFTNVYVKNFGEDLTEEALRDMFEKFGPITSHRVMTKDGKSR---GFGFVAFEKP 232
Query: 87 EDADYAIKIMNMIKLY-GKPIRVNKASS-HQKNLDV----------------GANIFIGN 128
EDA+ A++ +N +L GK + V +A +++ +++ G N+++ N
Sbjct: 233 EDAEEAVQKLNGKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNLYVKN 292
Query: 129 LDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNL 188
LD +D++ L F+ +G I + K+M
Sbjct: 293 LDDTIDDERLRKEFAPYGTIT-SAKVM--------------------------------- 318
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
D G SKGF F+ +++ + + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 319 -------LDEGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVALAQRKEER 366
>gi|293351002|ref|XP_001054954.2| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Rattus norvegicus]
Length = 438
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 115/233 (49%), Gaps = 48/233 (20%)
Query: 26 GGGESGDGD---ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIE 82
GG + G+ D A++YVG L +V+E++++E F +GP++++ + +D+VT+ GY ++
Sbjct: 228 GGSDDGNPDFPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVN 287
Query: 83 FMGEEDADYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYD 140
+ DA A++ MN + G+P+R+ ++ + VG N+FI NL +D K LY+
Sbjct: 288 YQQPVDAKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVG-NVFIKNLGKTIDNKALYN 346
Query: 141 TFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200
FSAFG IL K + +K
Sbjct: 347 IFSAFGNILSC-----------------KVACDEK------------------------G 365
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
KG+ F+++ E+++ +IDA++G +L R I V + K+ + +R A +
Sbjct: 366 PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 418
>gi|12836631|dbj|BAB23742.1| unnamed protein product [Mus musculus]
Length = 168
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 42/199 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
MN + GKP+R+ + G NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+ D SKG+ F+++ + E
Sbjct: 131 VC-----------------------------------------DENGSKGYGFVHFETQE 149
Query: 214 ASDASIDAMHGQYLCNRPI 232
A++ +I+ M+G L +R +
Sbjct: 150 AAERAIEKMNGMLLNDRKV 168
>gi|336389833|gb|EGO30976.1| hypothetical protein SERLADRAFT_455426 [Serpula lacrymans var.
lacrymans S7.9]
Length = 439
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 119/264 (45%), Gaps = 69/264 (26%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG--YGFIEFMGEEDADYA 92
A +YVG L +V+E ++ E+F +GPV +V + DR Q H G YGF+E+M A+ A
Sbjct: 17 AHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQ-HGGLNYGFVEYMDMRAAETA 75
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA---NIFIGNLDPEVDEKLLYDTFSAFGVIL 149
++ +N K++ IRVN A Q+N + ++F+G+L PEV++++L FSAFG +
Sbjct: 76 LQTLNGRKIFDTEIRVNWAYQGQQNKEDTTGHYHVFVGDLSPEVNDEILGKAFSAFGTM- 134
Query: 150 QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINY 209
D +M D ++G S+G+ F+ +
Sbjct: 135 --------------------------------------SDARVMWDMNSGKSRGYGFLAF 156
Query: 210 ASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQ 269
++ +I M+G++L +R I V++A +K GS A
Sbjct: 157 RDKTDAEQAIATMNGEWLGSRAIRVNWANQKT-----QGSVA------------------ 193
Query: 270 LFADAPPPAPLPPPPPPINIMGLP 293
A P P P PIN G P
Sbjct: 194 -VASPPRPGATGGAPAPINFQGGP 216
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 94/218 (43%), Gaps = 27/218 (12%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E G ++VG L +V++ ++ + F G + + + D + +GYGF+ F + D
Sbjct: 102 EDTTGHYHVFVGDLSPEVNDEILGKAFSAFGTMSDARVMWDMNSGKSRGYGFLAFRDKTD 161
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGAN----IFIGNLDPEVDEK---LLYDT 141
A+ AI MN L + IRVN A+ + A+ G ++ + L YD+
Sbjct: 162 AEQAIATMNGEWLGSRAIRVNWANQKTQGSVAVASPPRPGATGGAPAPINFQGGPLSYDS 221
Query: 142 FSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIF--IGNLDPEIMRDPDTG 199
V+ QTP Y + V + D+ +F IG L EI D
Sbjct: 222 -----VVQQTPS-------YNSTVYVGNLVPYCTQADL-IPLFQSIGYLS-EIRMQAD-- 265
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
+GFAF+ + E + +I + GQ + RPI S+
Sbjct: 266 --RGFAFVKLDTHEHAAMAIVQLQGQMVHGRPIKCSWG 301
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 126/280 (45%), Gaps = 58/280 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D +T+ GY ++ + D + A++
Sbjct: 65 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALE 124
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 125 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 184
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 185 AQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKAN 244
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N+ E + RD + G S+GF F+N+ + E + ++
Sbjct: 245 FTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSE-GKSRGFGFVNFTTHECAAKAV 303
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
+ ++G+ + + V A KK + + R A RL A
Sbjct: 304 EELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKA 343
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 124/292 (42%), Gaps = 37/292 (12%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV + + ++ +LF + G V + + +D ++ +G+GF+ F E A A++ +
Sbjct: 248 IYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKS-RGFGFVNFTTHECAAKAVEEL 306
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N + G+ + V +A H++ ++ G N++I NL ++D+ L
Sbjct: 307 NGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDKLR 366
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLD------PEIM 193
FS +G I + K+M G + + + E
Sbjct: 367 QMFSEYGPIT-SAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTEKK 425
Query: 194 RDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA--A 251
D G SKGF F+ +++ + + ++ M+ + + +P+ V+ A +KD + ++ ++ A
Sbjct: 426 GDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRKNQLEASIQA 485
Query: 252 ERLLAAQNPLSQADRPHQ------LFADAPPPAPLPPP----PPPINIMGLP 293
L Q +QA P Q +A P +PP P P +G+P
Sbjct: 486 RNQLRMQQAAAQAGLPQQYMQTPVYYAPGQQPNFMPPGGRGMPFPQGGLGMP 537
>gi|170084123|ref|XP_001873285.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650837|gb|EDR15077.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 422
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 107/211 (50%), Gaps = 45/211 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG--YGFIEFMGEEDADYA 92
A +YVG L +V+E ++ E+F +GPV +V + DR Q H G YGF+E+M A+ A
Sbjct: 11 AHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQ-HGGLNYGFVEYMDMRAAETA 69
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA---NIFIGNLDPEVDEKLLYDTFSAFGVIL 149
++ +N K++ IRVN A Q+N + ++F+G+L PEV++++L FSAFG +
Sbjct: 70 LQTLNGRKIFDTEIRVNWAYQGQQNKEDTTGHYHVFVGDLSPEVNDEVLAKAFSAFGTM- 128
Query: 150 QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINY 209
D +M D ++G S+G+ F+ +
Sbjct: 129 --------------------------------------SDARVMWDMNSGKSRGYGFLAF 150
Query: 210 ASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
++ +I M+G++L +R I V++A +K
Sbjct: 151 RDKTDAEQAIATMNGEWLGSRAIRVNWANQK 181
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 40/234 (17%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E G ++VG L +V++ ++ + F G + + + D + +GYGF+ F + D
Sbjct: 96 EDTTGHYHVFVGDLSPEVNDEVLAKAFSAFGTMSDARVMWDMNSGKSRGYGFLAFRDKTD 155
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
A+ AI MN L + IRVN A +QK + P G
Sbjct: 156 AEQAIATMNGEWLGSRAIRVNWA--NQKTQGAPPTTTASSPRP--------------GGA 199
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP------------------ 190
+ T I G P+ S Q+ + +++GNL P
Sbjct: 200 VTTGSAPAPINFQGGPLSYE--SVVQQTPAYNSTVYVGNLVPYCTQADLIPLFQSIGYLS 257
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
EI D +GFAF+ + E + +I + GQ + RPI S+ + G
Sbjct: 258 EIRMQAD----RGFAFVKLDTHEHAAMAIVQLQGQMVHGRPIKCSWGKDRADGG 307
>gi|346974495|gb|EGY17947.1| polyadenylate-binding protein [Verticillium dahliae VdLs.17]
Length = 759
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 126/266 (47%), Gaps = 60/266 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L+ +V+E +++ELF GPV ++ + +D VT+ GY ++ + D + A++
Sbjct: 61 ASLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALE 120
Query: 95 IMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL-- 149
+N + G+P R+ + + +KN N+FI NLD +D K L+DTF+AFG IL
Sbjct: 121 ELNYTVINGRPCRIMWSQRDPALRKNGQ--GNVFIKNLDVAIDNKALHDTFAAFGNILSC 178
Query: 150 -------------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVG 180
Q K +N + L K + V K K ++
Sbjct: 179 KVAQDEHGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMK 238
Query: 181 A---NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDA 217
A N+++ N++ E + RD + G S+GF F+N+ + EA+
Sbjct: 239 ANFTNVYVKNINSEASDDEFRDLFTKYGEVTSSSLARDQE-GKSRGFGFVNFTTHEAASQ 297
Query: 218 SIDAMHGQYLCNRPISVSYAFKKDSK 243
+++ ++G+ + + V A KK +
Sbjct: 298 AVEELNGKDFRGQDLYVGRAQKKHER 323
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 127/301 (42%), Gaps = 47/301 (15%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+YV ++ + S+ +LF + G V + + +D+ ++ +G+GF+ F E A A++
Sbjct: 243 NVYVKNINSEASDDEFRDLFTKYGEVTSSSLARDQEGKS-RGFGFVNFTTHEAASQAVEE 301
Query: 96 MNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N G+ + V +A H++ ++ G N++I NL +VD++ L
Sbjct: 302 LNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARQEKANKYQGVNLYIKNLSDDVDDEKL 361
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
FS FG I + K+M I + + + D E D
Sbjct: 362 RAMFSEFGPIT-SAKVMR------DSISEGEDEEKAEEETPAPEAEVKKEDSEADADSQE 414
Query: 199 --------------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
G SKGF F+ +++ E + ++ M+ + + N+P+ V+ A +KD +
Sbjct: 415 AADKKDAKKGDKKLGKSKGFGFVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRKDVRK 474
Query: 245 DR--HGSAAERLLAAQNPLSQADRPHQLFADAPPPAPLPPPPP---PINIMGLPPPPPSG 299
++ A + Q+ +QA P+Q P P P P G+P PP G
Sbjct: 475 NQLEQSIQARNQMRMQSAAAQAGMPNQFMQQ---PVYFPGQQPGFLPQGGRGMPFPPNMG 531
Query: 300 L 300
+
Sbjct: 532 M 532
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 110/221 (49%), Gaps = 45/221 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L+++ F GPV+++ + +D VT+ GY ++ F+ DA A+
Sbjct: 203 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVADAQKALD 262
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K LY+ FS FG IL +
Sbjct: 263 TMNFDVIKGKSIRLMWSQRDAYLRKSGIG-NVFIKNLDKSIDNKTLYEHFSTFGKIL-SS 320
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
K+M+ D SKG+AF+++ +
Sbjct: 321 KVMS----------------------------------------DDQGSKGYAFVHFQNQ 340
Query: 213 EASDASIDAMHGQYLCNRPISVS-YAFKKDSKGDRHGSAAE 252
A+D +I+ M+G L N + VS + +KD + + A+E
Sbjct: 341 SAADRAIEEMNGTLLKNCRVFVSRFKSRKDRESELKNKASE 381
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D + + + E+F + G ++V + D ++ +G+GF+ F E A A++ M
Sbjct: 385 VYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKS-KGFGFVSFASHEAAKNAVEEM 443
Query: 97 NMIKLYGKPI---RVNKASSHQKNLD--------------VGANIFIGNLDPEVDEKLLY 139
N + G+ I R K Q L G ++I NLD +D++ L
Sbjct: 444 NGKDINGQLIFVGRAQKKIERQAELKQMFEQLRQERFRRCRGVKLYIKNLDDTIDDEKLR 503
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
F++FG I + K+M + G
Sbjct: 504 KEFASFGSISRV-KVMQ----------------------------------------EEG 522
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF I ++S E + ++ M+G+ L ++P++++ A + + +
Sbjct: 523 RSKGFGLICFSSHEEAIKAMTEMNGRILGSKPLNIALAQRNEER 566
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 41/211 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD VSE L++++F G V ++ + +D +T+T GY ++ F E AI+
Sbjct: 40 ASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDYEAGRQAIE 99
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + G+P R+ + G+ NIFI NL ++D K L+DTFS FG IL
Sbjct: 100 KLNYTPIKGQPCRIMWSQRDPSLRKKGSGNIFIKNLHADIDNKALHDTFSVFGNILSC-- 157
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+I D TGNSKGF F+++ S E
Sbjct: 158 -------------------------------------KIATDEVTGNSKGFGFVHFESDE 180
Query: 214 ASDASIDAMHGQYLCNRPISVS-YAFKKDSK 243
A+ +IDA++G L + + V+ + +KD +
Sbjct: 181 AAREAIDAINGMLLNGQEVYVAPHVSRKDRQ 211
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 101/240 (42%), Gaps = 61/240 (25%)
Query: 21 QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGF 80
Q+KLE E+ +Y+ + + E E F + PV +VH+ KD + +G+GF
Sbjct: 211 QSKLE---EAKANFTNVYIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSEGKL-RGFGF 266
Query: 81 IEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS------------HQKNLD-----VGAN 123
+ + A A++ +N ++ +G+ + V +A Q L+ G N
Sbjct: 267 VNYETHAGAAKAVEELNGVEFHGQQLHVGRAQKKYERQQELRRQYEQSKLEKMEKYQGVN 326
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+FI NLD +D++ L + FS FG I + K+M
Sbjct: 327 LFIKNLDDSIDDERLREEFSPFGTIT-SVKVMTT-------------------------- 359
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ +++ E + +I + Q + +P+ V+ A +KD +
Sbjct: 360 -------------ENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVR 406
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 112/259 (43%), Gaps = 55/259 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+++YVG L VSE+ ++E+F Q GPV N+ + +D T+ Y +I + DA+ A+
Sbjct: 8 SSLYVGDLHPDVSESHLFEVFNQVGPVANLRICRDNTTRRSLSYAYINYHNSTDAERALD 67
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + GK R+ + G NIFI NLD VD K LYDTFSAFG IL
Sbjct: 68 TLNNTPIKGKACRIMWSQRDPSLRKSGIGNIFIKNLDKTVDHKALYDTFSAFGNILSCKV 127
Query: 154 I--------------------------------MNMIKLYGKPIRVNKASSHQKNLDVGA 181
+ +N K++ P + +K + +
Sbjct: 128 VTDETNTSKGFGFVHYESQESAEKAIAKVNGMMINNQKVFVGPFKSSKERGATQEVKY-T 186
Query: 182 NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASIDA 221
N+FI NL + IM D + G SKGF F N+ +A+ +++
Sbjct: 187 NVFIKNLSEDVSEQQLTDLLQAHGKITNLCIMTD-EKGKSKGFGFANFEHADAAKGAVEN 245
Query: 222 MHGQYLCNRPISVSYAFKK 240
+G+ + I V A KK
Sbjct: 246 ENGKMFSGKVIYVGRAQKK 264
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 119/279 (42%), Gaps = 68/279 (24%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+++ L + VSE + +L G + N+ + D ++ +G+GF F + A A++
Sbjct: 188 VFIKNLSEDVSEQQLTDLLQAHGKITNLCIMTDEKGKS-KGFGFANFEHADAAKGAVENE 246
Query: 97 NMIKLYGKPIRVNKASSHQKNLDV-------------GANIFIGNLDPEVDEKLLYDTFS 143
N GK I V +A QK L+ G N++I NLD +D L TFS
Sbjct: 247 NGKMFSGKVIYVGRA---QKKLEREAELKHKFETKYQGVNLYIKNLDDSIDSDKLRATFS 303
Query: 144 AFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKG 203
A+G I + ++MRD +SKG
Sbjct: 304 AYGTITSS---------------------------------------KVMRDDKGSSSKG 324
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F F+ Y++ + + ++ MHG+ + ++P+ V++A +KD + + + + +++ P+
Sbjct: 325 FGFVCYSTPDEASKAVAEMHGRMVGSKPLYVAFAQRKDVRRAQLEAQHTKFKSSRMPVQ- 383
Query: 264 ADRPHQLFADAPPPAPLPPPP---PPINIMGLPPPPPSG 299
+ PP P+ PP P + +P PP +G
Sbjct: 384 --------SIYPPTGPIFYPPAGMPVVYPQMIPRPPRAG 414
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 101/201 (50%), Gaps = 41/201 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG L+ VS++ ++ELF Q+G VV+V + +D ++ GY ++ + DA A++
Sbjct: 34 TSLYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLDAARALE 93
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
++N L KPIRV ++ + G ANIFI NLD +D K L++TFS+FG IL
Sbjct: 94 VLNFAALNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILSC-- 151
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+ V++A G SKGF F+ Y E
Sbjct: 152 ----------KVAVDEA----------------------------GQSKGFGFVQYDKEE 173
Query: 214 ASDASIDAMHGQYLCNRPISV 234
A+ +I +++G + ++P+ V
Sbjct: 174 AAQNAIKSLNGMLINDKPVFV 194
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 112/280 (40%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + + E F G +++ + D Q+ +G+GF+++ EE A A
Sbjct: 120 GSANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAVDEAGQS-KGFGFVQYDKEEAAQNA 178
Query: 93 IKIMNMIKLYGKPIRV-----NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
IK +N + + KP+ V + H + N+F+ NL ++ L F +G
Sbjct: 179 IKSLNGMLINDKPVFVGPFVRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGD 238
Query: 148 ILQTPKIMNM----------------------IKLYGKPI--------RVNKASSHQKNL 177
I ++ M +L GK I R K S + L
Sbjct: 239 ITSAVVMIGMDGKSRCFGFINFENPDAASHAVQELNGKKINDKEWYVGRAQKKSEREMEL 298
Query: 178 DV--------------GANIFIGNLDPEI--------------------MRDPDTGNSKG 203
G N+++ NLD I MRD + G SKG
Sbjct: 299 KRRFEQSLKDAADKYQGLNLYLKNLDDSIGDDQLCELFSNFGKITSYKVMRDQN-GLSKG 357
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F+ +++ E + ++ M+G+ + +P+ V++A +K+ +
Sbjct: 358 SGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDR 397
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 128/279 (45%), Gaps = 61/279 (21%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
++++Y G LD KV+E +++LF VV+V + +D+ + GY +I F DA A+
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAM 106
Query: 94 KIMNMIKLYGKPIRVNKASSH-QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+ +N L+ +PIR+ ++ L NIFI NLD +D K L++TFS+FG IL
Sbjct: 107 EALNYTPLFERPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCK 166
Query: 153 KIMNMI---KLYGKPIRVNKASSHQKNLD-------------VG---------------- 180
M++ K YG ++ K S Q +D VG
Sbjct: 167 VAMDVTGRSKGYGF-VQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPT 225
Query: 181 ---ANIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDA 217
N+++ NL EI MRD +GNS+ F F+N+ EA+ +
Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAAS 284
Query: 218 SIDAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERL 254
+++ M+G L + + V A KK + + R ER+
Sbjct: 285 AVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERI 323
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 73/282 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + ++E F G +++ + D VT +GYGF++F EE A A
Sbjct: 134 GKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAA 192
Query: 93 IKIMNMIKLYGKPI-------RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
I +N + + K + R +A N+++ NL E+ E L TF F
Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKF 252
Query: 146 GVI---------------------------LQTPKIMNMIKLYGKPI---RVNKASSHQK 175
GVI + MN I L + R K S ++
Sbjct: 253 GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312
Query: 176 NL--------------DVGANIFIGNLD--------------------PEIMRDPDTGNS 201
L GAN+++ NLD ++M +P G S
Sbjct: 313 ELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GLS 371
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+GF F+ Y++ E + ++ M+G+ + +P+ ++ A +K+ +
Sbjct: 372 RGFGFVAYSNPEEALRALSEMNGKMIGKKPLYIALAQRKEDR 413
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 58/288 (20%)
Query: 26 GGGESGDG-DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFM 84
G E+G ++++YVG L+ V+E +++LF Q VV++ + +D+ + GY ++ F
Sbjct: 23 GTAEAGQFPNSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFS 82
Query: 85 GEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFS 143
+DA A++++N L GK IR+ + G AN+FI NLD +D K L +TF+
Sbjct: 83 NPQDASNAMELLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFA 142
Query: 144 AFGVILQTP---------------------------KIMNMIKLYGKPIRVNKASSHQKN 176
+FG +L +N + + K + V + HQ+
Sbjct: 143 SFGSVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQER 202
Query: 177 LDVG-----ANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYAS 211
++ N+++ NL +M+D +G SKGF F+N+ S
Sbjct: 203 IEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGAITSAIVMKD-QSGKSKGFGFVNFQS 261
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
+++ A+++ ++G ++ V Y + KG+R R +N
Sbjct: 262 PDSAAAAVEKLNGTTFNDK---VWYVGRAQRKGEREAELKARFEQERN 306
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 97/227 (42%), Gaps = 58/227 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV L + S+ + + F G + + + KD+ ++ +G+GF+ F + A A++ +
Sbjct: 214 VYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQSGKS-KGFGFVNFQSPDSAAAAVEKL 272
Query: 97 NMIKLYGKPIRVNKAS-------------SHQKNLDV----GANIFIGNLDPEVDEKLLY 139
N K V +A ++N AN+++ NLD ++D++ L
Sbjct: 273 NGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLK 332
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ FS FG I + K+M LD + G
Sbjct: 333 ELFSEFGSIT-SCKVM--------------------------------LDQQ-------G 352
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
SKG F+ +++ E + +++ M+G+ + +P+ V+ A +++ + R
Sbjct: 353 LSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYVAVAQRREERKAR 399
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A +Y+ LDDK+ + + ELF + G + + + D+ +G GF+ F E+A A+
Sbjct: 315 ANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQ-QGLSKGSGFVAFSTPEEASRALN 373
Query: 95 IMNMIKLYGKPIRVNKASSHQK 116
MN + KP+ V A ++
Sbjct: 374 GMNGKMIGKKPLYVAVAQRREE 395
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 128/261 (49%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L++ F GPV+++ + +D+VT+ GY ++ F+ DA A+
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K LY+ FSAFG IL +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIG-NVFIKNLDKSIDNKTLYEHFSAFGKIL-SS 127
Query: 153 KIMN----------------------MIKLYGKPI------------RVNKASSHQKNLD 178
K+M+ + ++ GK + R ++ + +
Sbjct: 128 KVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKAS 187
Query: 179 VGANIFI----GNLDPEIMRD---------------PDTGNSKGFAFINYASFEASDASI 219
N++I G++D E ++D +G SKGF F+++ S EA+ ++
Sbjct: 188 EFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAV 247
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 248 EEMNGRDINGQLIFVGRAQKK 268
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 90/218 (41%), Gaps = 59/218 (27%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + ++F + G ++V + D ++ +G+GF+ F E A A++ M
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKS-KGFGFVSFDSHEAAKKAVEEM 250
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N + G+ I R K Q L G ++I NLD +D++ L
Sbjct: 251 NGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 310
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ FS+FG I + K+M + G
Sbjct: 311 NEFSSFGSISRV-KVM----------------------------------------QEEG 329
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
SKGF I ++S E + ++ M+G+ L ++P+S++ A
Sbjct: 330 QSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 367
>gi|299755830|ref|XP_001828914.2| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|298411401|gb|EAU92921.2| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 433
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 45/220 (20%)
Query: 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG--YGFIEF 83
GG A +YVG L +V+E ++ E+F +GPV +V + DR Q H G YGF+E+
Sbjct: 7 GGAAEAPRRAHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQ-HGGLNYGFVEY 65
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA---NIFIGNLDPEVDEKLLYD 140
M A+ A++ +N K++ IRVN A Q+N + + ++F+G+L PEV++++L
Sbjct: 66 MDMRAAETALQTLNGRKIFDTEIRVNWAYQGQQNKEDTSGHYHVFVGDLSPEVNDEVLGK 125
Query: 141 TFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200
FSAFG + D +M D ++G
Sbjct: 126 AFSAFGTL---------------------------------------SDARVMWDMNSGK 146
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
S+G+ F+ + ++ +I M+G++L +R I V++A +K
Sbjct: 147 SRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIRVNWANQK 186
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 128/261 (49%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L++ F GPV+++ + +D+VT+ GY ++ F+ DA A+
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K LY+ FSAFG IL +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIG-NVFIKNLDKSIDNKTLYEHFSAFGKIL-SS 127
Query: 153 KIMN----------------------MIKLYGKPI------------RVNKASSHQKNLD 178
K+M+ + ++ GK + R ++ + +
Sbjct: 128 KVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKAS 187
Query: 179 VGANIFI----GNLDPEIMRD---------------PDTGNSKGFAFINYASFEASDASI 219
N++I G++D E ++D +G SKGF F+++ S EA+ ++
Sbjct: 188 EFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAV 247
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 248 EEMNGRDINGQLIFVGRAQKK 268
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 90/218 (41%), Gaps = 59/218 (27%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + ++F + G ++V + D ++ +G+GF+ F E A A++ M
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKS-KGFGFVSFDSHEAAKKAVEEM 250
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N + G+ I R K Q L G ++I NLD +D++ L
Sbjct: 251 NGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 310
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ FS+FG I + K+M + G
Sbjct: 311 NEFSSFGSISRV-KVM----------------------------------------QEEG 329
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
SKGF I ++S E + ++ M+G+ L ++P+S++ A
Sbjct: 330 QSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 367
>gi|443924183|gb|ELU43247.1| polyadenylate-binding protein [Rhizoctonia solani AG-1 IA]
Length = 498
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 106/210 (50%), Gaps = 43/210 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQ-THQGYGFIEFMGEEDADYAI 93
A +YVG L +V+E ++ E+F +GPV +V + DR Q Q YGF+E+M A+ A+
Sbjct: 46 AHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGQNYGFVEYMDMRAAETAL 105
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGAN---IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
+ +N K++ IRVN A +N + +N +F+G+L PEV++++L F+AFG +
Sbjct: 106 QTLNGRKIFDTEIRVNWAYQGTQNKEDTSNHYHVFVGDLSPEVNDEVLAKAFAAFGSL-- 163
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
D +M D ++G S+G+ F+ +
Sbjct: 164 -------------------------------------SDARVMWDMNSGKSRGYGFLAFR 186
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKK 240
++ +I M+G++L +R I V++A +K
Sbjct: 187 DKTDAEQAIATMNGEWLGSRAIRVNWANQK 216
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 86/218 (39%), Gaps = 34/218 (15%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++VG L +V++ ++ + F G + + + D + +GYGF+ F + DA+ AI M
Sbjct: 139 VFVGDLSPEVNDEVLAKAFAAFGSLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATM 198
Query: 97 NMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMN 156
N L + IRVN A+ ++ G + G + P MN
Sbjct: 199 NGEWLGSRAIRVNWANQKTQSGGGGGMP-------PGMPSMGDSMGMGGGAMGGVPAPMN 251
Query: 157 MIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP------------------EIMRDPDT 198
G P+ S + +++GNL P EI D
Sbjct: 252 ---FQGGPLSYESVVSQTPAYNT--TVYVGNLVPYCTQADLIPLFQSIGYLSEIRMQAD- 305
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSY 236
+GFAF+ + E + +I + GQ + RPI S+
Sbjct: 306 ---RGFAFVKLDTHENAAMAIVQLQGQLVHGRPIKCSW 340
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 41/226 (18%)
Query: 10 GISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKD 69
++TP S T + + ++YVG LD V+E +++E+F GPV ++ + +D
Sbjct: 32 ALNTPSAPSSVSTATPNASPASQPNTSLYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRD 91
Query: 70 RVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGN 128
VT+ GY ++ ++ DA+ A++ +N + K R+ + G NIFI N
Sbjct: 92 AVTRRSLGYAYVNYLNAADAERALEQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKN 151
Query: 129 LDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNL 188
LD +D K L+DTF+AFG IL M+
Sbjct: 152 LDETIDNKALHDTFAAFGDILSCKVAMD-------------------------------- 179
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234
TG SKG+ F++Y + E+++A+I ++G L ++ + V
Sbjct: 180 --------STGASKGYGFVHYVTAESAEAAIKGVNGMQLNDKVVFV 217
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 141/350 (40%), Gaps = 90/350 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD+ + + + F G +++ + D T +GYGF+ ++ E A+ A
Sbjct: 143 GQGNIFIKNLDETIDNKALHDTFAAFGDILSCKVAMDS-TGASKGYGFVHYVTAESAEAA 201
Query: 93 IKIMNMIKLYGK----PIRVNKASSHQKNLDVGA---NIFIGNLDPEVDEKLLYDTFSAF 145
IK +N ++L K I V + K +V A N++I NL EV + L + FS +
Sbjct: 202 IKGVNGMQLNDKVVFVGIHVPRRERQAKIDEVRAHFTNLYIKNLPTEVTTEELNEMFSKY 261
Query: 146 GV-------------------------------------------ILQTPKIMNMIKLYG 162
G IL + ++
Sbjct: 262 GPVTSAAVQADESGKHRGFGFVNYENHESASKAVEALHDKDYKGNILYVARAQKRVERDA 321
Query: 163 KPIRVNKASSHQKNLDV-GANIFIGNLDPE--------------------IMRDPDTGNS 201
+ R ++ ++ L G N++I NLD E +M+D D G S
Sbjct: 322 ELRRAHEQQKYETTLKYQGVNLYIKNLDDEYDDEKLQAEFLPFGTITSCKVMKD-DKGVS 380
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPL 261
+GF F+ +++ + + ++ M+G+ L ++P+ VS A +KD + ++ L AQ
Sbjct: 381 RGFGFVCFSAPDEATKAVAEMNGKMLGSKPLYVSLAQRKDVR--------KQQLEAQMSQ 432
Query: 262 SQADRPHQLFADAPPPAPLPPPPPPINIMG---LPPP------PPSGLRA 302
R Q+ A P AP PP + G PPP PP+G+ A
Sbjct: 433 RAQMRSQQIAAAGIPGAPYGAPPNQMYYGGAAAYPPPGRGMAYPPNGMPA 482
>gi|319411853|emb|CBQ73896.1| probable PAB1-mRNA polyadenylate-binding protein [Sporisorium
reilianum SRZ2]
Length = 650
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 117/261 (44%), Gaps = 53/261 (20%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ F+ D + A++
Sbjct: 48 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 107
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP-- 152
+N + +P R+ + G NIFI NLD +D K L+DTF+AFG IL
Sbjct: 108 LNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVA 167
Query: 153 -----------------------------KIMNMIKLY-GKPI-RVNKASSHQKNLDVGA 181
++N K+Y G I R + + +++
Sbjct: 168 TNDTGSLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRANFT 227
Query: 182 NIFIGNLDPE-------------------IMRDPDTGNSKGFAFINYASFEASDASIDAM 222
N++ N+DP+ +++ D G SKGF F+N+ + ++D +
Sbjct: 228 NVYAKNVDPDVTDEEFEKLFTRYGKITSCVLQRDDDGKSKGFGFVNFEDHNEAQTAVDEL 287
Query: 223 HGQYLCNRPISVSYAFKKDSK 243
H + + V+ A KK +
Sbjct: 288 HDSDFKGQKLFVARAQKKSER 308
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 100/240 (41%), Gaps = 61/240 (25%)
Query: 21 QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGF 80
Q K+E ES +Y +D V++ +LF + G + + + +D ++ +G+GF
Sbjct: 216 QAKIE---ESRANFTNVYAKNVDPDVTDEEFEKLFTRYGKITSCVLQRDDDGKS-KGFGF 271
Query: 81 IEFMGEEDADYAIKIMNMIKLYGKPI---RVNKASSHQKNLDV--------------GAN 123
+ F +A A+ ++ G+ + R K S ++ L G N
Sbjct: 272 VNFEDHNEAQTAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVN 331
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+++ N+ D++ L + F+ FG I
Sbjct: 332 LYLKNIPESYDDERLREEFAPFGAITSC-------------------------------- 359
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+IMR P +G S+GF F+ Y+ E ++ ++ M+G+ L NRP+ V+ A +KD +
Sbjct: 360 -------KIMRAP-SGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALAQRKDDR 411
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 117/262 (44%), Gaps = 54/262 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG L+ VSE ++ELF Q G VV++ + +D +T+ GY ++ + +DA A++
Sbjct: 28 TSLYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATRALE 87
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
++N L G PIR+ + G ANIFI NLD +D K L+DTFSAFG IL
Sbjct: 88 LLNFSVLNGNPIRIMFSHRDPSIRKSGTANIFIKNLDKTIDNKALHDTFSAFGGILSCKV 147
Query: 153 --------------------------KIMNMIKLYGKPIRVNKASSHQKNLDVGA----- 181
+ +N + L K + V Q+ G
Sbjct: 148 AVDGSGQSKGYGFVQFEQEESALTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGGVSKFN 207
Query: 182 NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASIDA 221
N+++ NL +MRD D G SK F F+N+ + + +++A
Sbjct: 208 NVYVKNLGENTTEDDLKNVFGAYGTISSAVVMRDSD-GKSKCFGFVNFEHPDNAAKAVEA 266
Query: 222 MHGQYLCNRPISVSYAFKKDSK 243
++G+ + V A KK +
Sbjct: 267 LNGKKRDEKEWYVGRAQKKSER 288
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 118/297 (39%), Gaps = 71/297 (23%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + + + F G +++ + D Q+ +GYGF++F EE A A
Sbjct: 114 GTANIFIKNLDKTIDNKALHDTFSAFGGILSCKVAVDGSGQS-KGYGFVQFEQEESALTA 172
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA-----NIFIGNLDPEVDEKLLYDTFSAFGV 147
I+ +N + L K + V Q+ G N+++ NL E L + F A+G
Sbjct: 173 IEKVNGMLLNDKQVFVGPFVRRQERDQSGGVSKFNNVYVKNLGENTTEDDLKNVFGAYGT 232
Query: 148 ILQT---------PKIMNMIK-------------LYGKPI--------RVNKASSHQKNL 177
I K + L GK R K S + L
Sbjct: 233 ISSAVVMRDSDGKSKCFGFVNFEHPDNAAKAVEALNGKKRDEKEWYVGRAQKKSEREAEL 292
Query: 178 DV--------------GANIFIGNLDP--------------------EIMRDPDTGNSKG 203
G N+++ NLD ++MRDP G S+G
Sbjct: 293 RAKFEQERKERIEKYQGVNLYLKNLDDTVDDEKLRELFADYGTITSCKVMRDPQ-GQSRG 351
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNP 260
F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ + R +A ++ + +P
Sbjct: 352 SGFVAFSSPEEATRAVTEMNGKMVGSKPLYVALAQRKEERRARLQAAFAQMRTSVSP 408
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 128/265 (48%), Gaps = 59/265 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L+++ F GPV+++ + +D VT+ GY ++ F+ DA A+
Sbjct: 109 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 168
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ ++ + +G N+FI NLD +D K LY+ FSAFG IL +
Sbjct: 169 TMNFDMIKGKPIRLMWSQRDAYLRKSGIG-NVFIKNLDKSIDNKTLYEHFSAFGKIL-SS 226
Query: 153 KIMN----------------------MIKLYGKPI------------RVNKASSHQKNLD 178
K+M+ + ++ G + R ++ + Q ++
Sbjct: 227 KVMSDDQGSRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKVN 286
Query: 179 VGANIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDAS 218
N+++ N L ++M D G SKGF F+++ S EA+ +
Sbjct: 287 EFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSG-GKSKGFGFVSFDSHEAAKKA 345
Query: 219 IDAMHGQYLCNRPISVSYAFKKDSK 243
++ M+G+ + + + V A KK +
Sbjct: 346 VEEMNGKDVNGQLLFVGRAQKKSER 370
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 59/218 (27%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV D + + + E+F + G ++V + D ++ +G+GF+ F E A A++ M
Sbjct: 291 VYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKS-KGFGFVSFDSHEAAKKAVEEM 349
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N + G+ + R K S Q L G ++I NLD +D++ L+
Sbjct: 350 NGKDVNGQLLFVGRAQKKSERQAELKQMFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLW 409
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS+FG I + +IMR+ G
Sbjct: 410 REFSSFGSISRV---------------------------------------KIMREE--G 428
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
SKGF I ++S E + ++ M+G+ L ++P+ ++ A
Sbjct: 429 RSKGFGLICFSSPEEATKAMAEMNGRILGSKPLYIALA 466
>gi|336376899|gb|EGO05234.1| hypothetical protein SERLA73DRAFT_44756 [Serpula lacrymans var.
lacrymans S7.3]
Length = 523
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 119/264 (45%), Gaps = 69/264 (26%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG--YGFIEFMGEEDADYA 92
A +YVG L +V+E ++ E+F +GPV +V + DR Q H G YGF+E+M A+ A
Sbjct: 14 AHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQ-HGGLNYGFVEYMDMRAAETA 72
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA---NIFIGNLDPEVDEKLLYDTFSAFGVIL 149
++ +N K++ IRVN A Q+N + ++F+G+L PEV++++L FSAFG +
Sbjct: 73 LQTLNGRKIFDTEIRVNWAYQGQQNKEDTTGHYHVFVGDLSPEVNDEILGKAFSAFGTM- 131
Query: 150 QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINY 209
D +M D ++G S+G+ F+ +
Sbjct: 132 --------------------------------------SDARVMWDMNSGKSRGYGFLAF 153
Query: 210 ASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQ 269
++ +I M+G++L +R I V++A +K GS A
Sbjct: 154 RDKTDAEQAIATMNGEWLGSRAIRVNWANQKT-----QGSVA------------------ 190
Query: 270 LFADAPPPAPLPPPPPPINIMGLP 293
A P P P PIN G P
Sbjct: 191 -VASPPRPGATGGAPAPINFQGGP 213
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 27/217 (12%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E G ++VG L +V++ ++ + F G + + + D + +GYGF+ F + D
Sbjct: 99 EDTTGHYHVFVGDLSPEVNDEILGKAFSAFGTMSDARVMWDMNSGKSRGYGFLAFRDKTD 158
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGAN----IFIGNLDPEVDEK---LLYDT 141
A+ AI MN L + IRVN A+ + A+ G ++ + L YD+
Sbjct: 159 AEQAIATMNGEWLGSRAIRVNWANQKTQGSVAVASPPRPGATGGAPAPINFQGGPLSYDS 218
Query: 142 FSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIF--IGNLDPEIMRDPDTG 199
V+ QTP Y + V + D+ +F IG L EI D
Sbjct: 219 -----VVQQTPS-------YNSTVYVGNLVPYCTQADL-IPLFQSIGYLS-EIRMQAD-- 262
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSY 236
+GFAF+ + E + +I + GQ + RPI S+
Sbjct: 263 --RGFAFVKLDTHEHAAMAIVQLQGQMVHGRPIKCSW 297
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 118/250 (47%), Gaps = 47/250 (18%)
Query: 7 IQAGISTPCLQSLSQTK---LEGGGESGDG---DATIYVGGLDDKVSETLMWELFVQSGP 60
+ A IS+P QS++ + G G G +A++YVG L+ V+E +++LF Q
Sbjct: 1 MAAAISSPMAQSVAAAATPVIAPGVALGGGPFANASLYVGDLEGNVNEEQLYDLFSQVAQ 60
Query: 61 VVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDV 120
+ ++ + +D+ ++ GY ++ F +DA A++++N L GKPIR+ +
Sbjct: 61 IASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELLNFTPLNGKPIRIMFSQRDPSIRKS 120
Query: 121 G-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDV 179
G N+FI NLD +D K L+DTF+AFG +L S + LD
Sbjct: 121 GHGNVFIKNLDTSIDNKALHDTFAAFGTVL----------------------SCKVALD- 157
Query: 180 GANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239
+G SKG+ F+ + + EA+ +I ++G + ++ + V +
Sbjct: 158 -----------------SSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIR 200
Query: 240 KDSKGDRHGS 249
+ + +GS
Sbjct: 201 RQEREQTNGS 210
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/350 (21%), Positives = 131/350 (37%), Gaps = 97/350 (27%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + + + F G V++ + D Q+ +GYGF++F EE A A
Sbjct: 121 GHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQS-KGYGFVQFDNEEAAQNA 179
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG-----ANIFIGNLDPEVDEKLLYDTFSAFGV 147
IK +N + + K + V Q+ N+++ NL ++ L F +G
Sbjct: 180 IKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGT 239
Query: 148 I--------------------LQTP--KIMNMIKLYGKPI---------RVNKASSHQKN 176
I Q P + +L G I R + + +
Sbjct: 240 ITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAE 299
Query: 177 LDV--------------GANIFIGNLDP--------------------EIMRDPDTGNSK 202
L GAN+++ NLD ++M D + G SK
Sbjct: 300 LKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSN-GRSK 358
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLS 262
G F+++++ E + +++ M+G+ + +P+ V+ A +K+ ER Q +
Sbjct: 359 GSGFVSFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKE----------ERKAHLQAQFA 408
Query: 263 QADRPHQLFADAPPPAPLP------PPPPPINIM------GLPPPPPSGL 300
Q P + AP PA +P P P + G PP P+G
Sbjct: 409 QIRAPGGM---APLPAGIPLYHPGAPRLAPQQLYYGQGTPGFMPPQPAGF 455
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 124/265 (46%), Gaps = 59/265 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L+++ F GPV+++ + +D VT+ GY ++ F+ DA A+
Sbjct: 109 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQRALD 168
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ ++ + +G N+FI NLD +D K LY+ FSAFG IL +
Sbjct: 169 TMNFDTIKGKPIRLMWSQRDAYLRKSGIG-NVFIKNLDRSIDNKTLYEHFSAFGKIL-SS 226
Query: 153 KIM---------------NMIKLYGKPIRVNKASSHQKNLDVG----------------- 180
K+M N I +N A L VG
Sbjct: 227 KVMSDDQGSRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELRNKAN 286
Query: 181 --ANIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDAS 218
N++I N L ++M D +G SKGF F+++ S EA+ +
Sbjct: 287 EFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKA 345
Query: 219 IDAMHGQYLCNRPISVSYAFKKDSK 243
++ M+G+ + + + V A KK +
Sbjct: 346 VEEMNGKDINGQLLFVGRAQKKSER 370
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 59/231 (25%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+Y+ D + + + E+F + G ++V + D ++ +G+GF+ F E A A++
Sbjct: 289 TNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKS-KGFGFVSFDSHEAAKKAVE 347
Query: 95 IMNMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKL 137
MN + G+ + R K S Q L G ++I NLD +D++
Sbjct: 348 EMNGKDINGQLLFVGRAQKKSERQAELKQVFEQLKQERFRRCQGMKLYIKNLDDTIDDEK 407
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L+ FS+FG I + +IMR+
Sbjct: 408 LWREFSSFGSISRV---------------------------------------KIMREE- 427
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
G SKGF I ++S E + ++ M+G+ L ++P+ ++ A K + HG
Sbjct: 428 -GRSKGFGLICFSSPEEATKAMAEMNGRILGSKPLYIALAQKPXERNAYHG 477
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 128/280 (45%), Gaps = 58/280 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 59 ASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALE 118
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 119 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 178
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 179 AQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKAN 238
Query: 182 --NIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASDASI 219
N+++ N+ P++ RD + G ++GF F+N+ + EA+ ++
Sbjct: 239 FTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQE-GKTRGFGFVNFTTHEAAFKAV 297
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
+ ++G+ + + V A KK + + R A RL A
Sbjct: 298 EELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKA 337
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 118/253 (46%), Gaps = 40/253 (15%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+YV + V++ +LF + G V + + +D+ +T +G+GF+ F E A A++
Sbjct: 241 NVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQEGKT-RGFGFVNFTTHEAAFKAVEE 299
Query: 96 MNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N G+ + V +A H++ ++ G N++I NLD +VD++ L
Sbjct: 300 LNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKL 359
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
F+ FG I + K+M + G+ +A +K+ + N G + E +
Sbjct: 360 RQMFAEFGPIT-SAKVMRDVPQEGE----EEAKDQEKDKE---NQKEGEKEGESAEGAEK 411
Query: 199 ----------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
G SKGF F+ +++ + + ++ M+ + + N+P+ V+ A +KD +
Sbjct: 412 KTEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVR----K 467
Query: 249 SAAERLLAAQNPL 261
S E + A+N L
Sbjct: 468 SQLEASIQARNQL 480
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 117/245 (47%), Gaps = 55/245 (22%)
Query: 50 LMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV- 108
+++E F +GP++++ + +D +T+ GY ++ F DA+ A+ MN + GKP+R+
Sbjct: 1 MLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 60
Query: 109 -NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI------------- 154
++ + VG NIFI NLD +D K LYDTFSAFG IL +
Sbjct: 61 WSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVH 119
Query: 155 -------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGN----LDP 190
MN + L + + V + S ++ ++GA N++I N +D
Sbjct: 120 FETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDD 179
Query: 191 EIMRD---------------PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235
E ++D ++G SKGF F+++ E + ++D M+G+ L + I V
Sbjct: 180 ERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 239
Query: 236 YAFKK 240
A KK
Sbjct: 240 RAQKK 244
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ F +E A+ A
Sbjct: 72 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 129
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 130 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 189
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 190 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 249
Query: 176 NLDV--------------GANIFIGNLDP----EIMRDP--------------DTGNSKG 203
L G N+++ NLD E +R + G SKG
Sbjct: 250 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKG 309
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 310 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 349
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 118/250 (47%), Gaps = 47/250 (18%)
Query: 7 IQAGISTPCLQSLSQTK---LEGGGESGDG---DATIYVGGLDDKVSETLMWELFVQSGP 60
+ A IS+P QS++ + G G G +A++YVG L+ V+E +++LF Q
Sbjct: 1 MAAAISSPMAQSVAAAATPVIAPGVALGGGPFANASLYVGDLEGNVNEEQLYDLFSQVAQ 60
Query: 61 VVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDV 120
+ ++ + +D+ ++ GY ++ F +DA A++++N L GKPIR+ +
Sbjct: 61 IASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELLNFTPLNGKPIRIMFSQRDPSIRKS 120
Query: 121 G-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDV 179
G N+FI NLD +D K L+DTF+AFG +L S + LD
Sbjct: 121 GHGNVFIKNLDTSIDNKALHDTFAAFGTVL----------------------SCKVALD- 157
Query: 180 GANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239
+G SKG+ F+ + + EA+ +I ++G + ++ + V +
Sbjct: 158 -----------------SSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIR 200
Query: 240 KDSKGDRHGS 249
+ + +GS
Sbjct: 201 RQEREQTNGS 210
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/349 (21%), Positives = 130/349 (37%), Gaps = 95/349 (27%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + + + F G V++ + D Q+ +GYGF++F EE A A
Sbjct: 121 GHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQS-KGYGFVQFDNEEAAQNA 179
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG-----ANIFIGNLDPEVDEKLLYDTFSAFGV 147
IK +N + + K + V Q+ N+++ NL ++ L F +G
Sbjct: 180 IKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGT 239
Query: 148 I--------------------LQTP--KIMNMIKLYGKPI---------RVNKASSHQKN 176
I Q P + +L G I R + + +
Sbjct: 240 ITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAE 299
Query: 177 LDV--------------GANIFIGNLD----PEIMRD---------------PDTGNSKG 203
L GAN+++ NLD E ++D G SKG
Sbjct: 300 LKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKG 359
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F+++++ E + +++ M+G+ + +P+ V+ A +K+ ER Q +Q
Sbjct: 360 SGFVSFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKE----------ERKAHLQAQFAQ 409
Query: 264 ADRPHQLFADAPPPAPLP------PPPPPINIM------GLPPPPPSGL 300
P + AP PA +P P P + G PP P+G
Sbjct: 410 IRAPGGM---APLPAGIPLYHPGAPRLAPQQLYYGQGTPGFMPPQPAGF 455
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 121/263 (46%), Gaps = 56/263 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG LD V+++ +++LF Q G VV+V + +D T+ GYG++ + +DA A+
Sbjct: 31 TSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 90
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
++N L KP+R+ + G ANIFI NLD +D K L+DTFS+FG IL
Sbjct: 91 VLNFTPLNNKPLRIMYSHRDPSIRKSGMANIFIKNLDKTIDHKALHDTFSSFGNILSCKV 150
Query: 153 -------------------------------KIMNMIKLY-GKPIRVNKASSHQKNLDVG 180
++N ++Y G +R + S N+
Sbjct: 151 ATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLINDKQVYVGNFLRKQERDSALSNIKFN 210
Query: 181 ANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASID 220
NI++ NL +MRD D G SK F F+N+ + + + +++
Sbjct: 211 -NIYVKNLAESTTDEDLKSIFEEHGAITSAVVMRDAD-GKSKCFGFVNFENVDDAAKAVE 268
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
A++G+ ++ V A KK +
Sbjct: 269 ALNGKKFDDKEWYVGKAQKKSER 291
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 97/226 (42%), Gaps = 57/226 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV L + ++ + +F + G + + + +D ++ + +GF+ F +DA A++ +
Sbjct: 212 IYVKNLAESTTDEDLKSIFEEHGAITSAVVMRDADGKS-KCFGFVNFENVDDAAKAVEAL 270
Query: 97 NMIKLYGKPIRVNKASSH-QKNLDV---------------GANIFIGNLDPEVDEKLLYD 140
N K K V KA ++ L++ N++I NLD V+++ L +
Sbjct: 271 NGKKFDDKEWYVGKAQKKSERELELKGRFEQSLESVEKYQAVNLYIKNLDDSVNDEKLKE 330
Query: 141 TFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200
FS FG I ++M DP +G
Sbjct: 331 LFSDFGTITSC---------------------------------------KVMHDP-SGI 350
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
S+G F+ +++ E + ++ ++G+ + ++P+ V+ A +K+ + R
Sbjct: 351 SRGSGFVAFSTPEEASRALAELNGKMVVSKPLYVAPAQRKEERRAR 396
>gi|409051430|gb|EKM60906.1| hypothetical protein PHACADRAFT_247129 [Phanerochaete carnosa
HHB-10118-sp]
Length = 425
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 107/211 (50%), Gaps = 45/211 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG--YGFIEFMGEEDADYA 92
A +YVG L +V+E ++ E+F +GPV +V + DR Q H G YGF+E+M A+ A
Sbjct: 13 AHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQ-HGGLNYGFVEYMDMRAAETA 71
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA---NIFIGNLDPEVDEKLLYDTFSAFGVIL 149
++ +N K++ IRVN A Q+N + ++F+G+L PEV++++L F+AFG +
Sbjct: 72 LQTLNGRKIFDTEIRVNWAYQGQQNKEDTTGHYHVFVGDLSPEVNDEVLAKAFAAFGTL- 130
Query: 150 QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINY 209
D +M D ++G S+G+ F+ +
Sbjct: 131 --------------------------------------SDARVMWDMNSGKSRGYGFLAF 152
Query: 210 ASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
++ +I M+G++L +R I V++A +K
Sbjct: 153 RDKTDAEQAIATMNGEWLGSRAIRVNWANQK 183
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 89/234 (38%), Gaps = 39/234 (16%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E G ++VG L +V++ ++ + F G + + + D + +GYGF+ F + D
Sbjct: 98 EDTTGHYHVFVGDLSPEVNDEVLAKAFAAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTD 157
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
A+ AI MN L + IRVN A+ + P +
Sbjct: 158 AEQAIATMNGEWLGSRAIRVNWANQKTQGA------------PPPRAGNGGNGSDGGHGG 205
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP------------------ 190
P MN G P+ S Q+ + +++GNL P
Sbjct: 206 GGAPAPMN---FQGGPLSYE--SVVQQTPAYNSTVYVGNLVPYATQADLIPLFQSIGYLS 260
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
EI D +GFAF+ + E + +I + GQ + RPI S+ + G
Sbjct: 261 EIRMQAD----RGFAFVKLDTHEHAAMAIVQLQGQMVHGRPIKCSWGKDRADGG 310
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 121/264 (45%), Gaps = 55/264 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALE 120
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 121 ELNYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDGAIDNKALHDTFAAFGNILSCKV 180
Query: 154 IMNMI---KLYG-----------KPIR-VNKASSHQKNLDVG------------------ 180
++ + K YG + I+ VN ++K + VG
Sbjct: 181 AVDELGNSKGYGFVHYETAEAASQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKAN 240
Query: 181 -ANIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASDASI 219
NI++ N++ E+ D +TG S+GF F+NY + E + ++
Sbjct: 241 FTNIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKAV 300
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
D ++ + + V A KK +
Sbjct: 301 DELNDSDFHGQKLYVGRAQKKHER 324
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 111/241 (46%), Gaps = 35/241 (14%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV ++ +V++ ELF + G + + + D T +G+GF+ ++ EDA A+ +
Sbjct: 244 IYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKAVDEL 303
Query: 97 NMIKLYGKPIRVNKAS-SHQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N +G+ + V +A H++ ++ G N+++ NL EVD++ L
Sbjct: 304 NDSDFHGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYQGVNLYVKNLADEVDDEELR 363
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKP---IRVNKASSHQKNLD----VGANIFIGNLDPEI 192
F A+G I + K+M + K + NK +K +D N E+
Sbjct: 364 KIFEAYGAIT-SAKVMRDVTPLDKAETDAKENKTDDKEKQVDGEPTEDKNGEEQEDMEEL 422
Query: 193 MRDPDT----------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242
+ DT G SKGF F+ +++ + + ++ ++ + + +P+ V+ A +K+
Sbjct: 423 EKKMDTVTIGGEKKVLGKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEV 482
Query: 243 K 243
+
Sbjct: 483 R 483
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 50/233 (21%)
Query: 25 EGGGESG--DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIE 82
E G SG + A++YVG L+ V+E ++E+F G V ++ + +D V++ GY ++
Sbjct: 55 EQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVN 114
Query: 83 FMGEEDADYAIKIMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLY 139
+ ED + AI+ +N + G+P R+ + S +++ D NIFI NL P +D K L+
Sbjct: 115 YHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGD--GNIFIKNLHPAIDNKALH 172
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
DTFSAFG IL ++ D D G
Sbjct: 173 DTFSAFGKILSV---------------------------------------KVATD-DLG 192
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
SK F F++Y + EA+ A+I++++G L +R + Y K SK DR E
Sbjct: 193 QSKCFGFVHYETEEAAQAAIESVNGMLLNDREV---YVGKHVSKKDRESKLEE 242
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 117/297 (39%), Gaps = 80/297 (26%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
IYV +D +E ELF G + ++++ KD ++ +G+GF+ F E A A++
Sbjct: 249 NIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKS-KGFGFVNFEEHEAAAKAVEE 307
Query: 96 MNMIKLYGKPIRVNKASSHQKNLD-----------------VGANIFIGNLDPEVDEKLL 138
+N ++ G+ I V +A ++ + G N+F+ NLD ++D + L
Sbjct: 308 LNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKL 367
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
+ F FG I + ++M D D
Sbjct: 368 EEEFKPFGTITSS---------------------------------------KVMVD-DA 387
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR--HGSAAERLLA 256
G SKGF F+ +++ E + +I M+ + + +P+ V+ A +KD + + A +
Sbjct: 388 GKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQARNQMR 447
Query: 257 AQNPLSQADRPHQLFADAPPP----------------APLPPPPPPINIMGLPPPPP 297
QN + P Q PP AP P P P + + G P P
Sbjct: 448 MQNAAAAGGLPGQFM----PPMFYGQQGFFPPNGRGNAPFPGPNPQMMMRGRGQPFP 500
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 121/242 (50%), Gaps = 54/242 (22%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
++++YVG L V++ +++LF Q PV++V + +D++TQ+ GYG++ + DA A+
Sbjct: 24 NSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAM 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNL--DVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
+ +N + L GKPIR+ SH+ L G AN+FI NL+ +D K L++TFS FG +L
Sbjct: 84 ENLNYVPLNGKPIRI--MFSHRDPLIRKTGFANLFIKNLETSIDNKALHETFSVFGNVLS 141
Query: 151 TP--------------------------------KIMNMIKLY-GKPIRVNKASS----- 172
++MN K+Y G +R + SS
Sbjct: 142 CKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDGRLMNDKKVYVGYFVRCQERSSPKFTN 201
Query: 173 -HQKNLDVGA---------NIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAM 222
+ KNL N F +IM+D + GNSK F F+N+ S +++ +++ +
Sbjct: 202 VYVKNLSESYTNEDLKQLFNTFGVITSVKIMKD-ENGNSKRFGFVNFQSSDSAATAVEKL 260
Query: 223 HG 224
+G
Sbjct: 261 NG 262
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 113/283 (39%), Gaps = 80/283 (28%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A +++ L+ + + E F G V++ + D + +G+GF++F ++ A A
Sbjct: 111 GFANLFIKNLETSIDNKALHETFSVFGNVLSCKVAMDSNGHS-KGHGFVQFDNDQSAKNA 169
Query: 93 I-----KIMNMIKLY-GKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFG 146
I ++MN K+Y G +R + SS + N+++ NL + L F+ FG
Sbjct: 170 IEKLDGRLMNDKKVYVGYFVRCQERSSPK-----FTNVYVKNLSESYTNEDLKQLFNTFG 224
Query: 147 VILQTPKIMN-----------------------MIKLYGKPI---------RVNKASSHQ 174
VI + KIM + KL G R K S +
Sbjct: 225 VIT-SVKIMKDENGNSKRFGFVNFQSSDSAATAVEKLNGSTTNDGKVLFVGRAQKKSERE 283
Query: 175 KNLDV--------------GANIFIGNLDP--------------------EIMRDPDTGN 200
L GAN+++ N+D ++M D G
Sbjct: 284 AELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDA-RGR 342
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKG F+ + + E + +ID M+G+ + +P+ VS A +K+ +
Sbjct: 343 SKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYVSVAQRKEER 385
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 119/264 (45%), Gaps = 55/264 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 55 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 114
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 115 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 174
Query: 154 IMNMI---KLYG-----------KPIR-VNKASSHQKNLDVG------------------ 180
+ K YG I+ VN ++K + VG
Sbjct: 175 AQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKAN 234
Query: 181 -ANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N+++ NLD E I RD +TG S+GF F + E++ A++
Sbjct: 235 FTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFFYFLKHESAAAAV 294
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ ++ + + + V A KK +
Sbjct: 295 EELNDKEYKGQKLYVGRAQKKHER 318
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 121/276 (43%), Gaps = 37/276 (13%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV LD +VS ELF + G + + + +D T +G+GF F+ E A A++ +
Sbjct: 238 VYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFFYFLKHESAAAAVEEL 297
Query: 97 NMIKLYGKPIRVNKAS-SHQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N + G+ + V +A H++ ++ G N+++ NL ++D++ L
Sbjct: 298 NDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLR 357
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRD---- 195
D F +FG I + + G K S++++N+ A G D D
Sbjct: 358 DLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKESGEEDSADKSDKVEK 417
Query: 196 --------PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRH 247
G SKGF F+ +++ + + ++ M+ + + +P+ V+ A +KD +
Sbjct: 418 SDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR---- 473
Query: 248 GSAAERLLAAQNPLSQADRPHQLFADAPPPAPLPPP 283
S E + A+N + R Q+ A A P P
Sbjct: 474 KSQLEASIQARNTI----RQQQVAAAAGMSQPFMQP 505
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 128/279 (45%), Gaps = 61/279 (21%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
++++Y G LD KV+E +++LF VV+V + +D+ + GY +I F DA A+
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAM 106
Query: 94 KIMNMIKLYGKPIRVNKASSH-QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+ +N L+ +PIR+ ++ L NIFI NLD +D K L++TFS+FG IL
Sbjct: 107 EALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCK 166
Query: 153 KIMNMI---KLYGKPIRVNKASSHQKNLD-------------VG---------------- 180
M++ K YG ++ K S Q +D VG
Sbjct: 167 VAMDVTGRSKGYGF-VQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPT 225
Query: 181 ---ANIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDA 217
N+++ NL EI MRD +GNS+ F F+N+ EA+ +
Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAAS 284
Query: 218 SIDAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERL 254
+++ M+G L + + V A KK + + R ER+
Sbjct: 285 AVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERI 323
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 73/282 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + ++E F G +++ + D VT +GYGF++F EE A A
Sbjct: 134 GKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAA 192
Query: 93 IKIMNMIKLYGKPI-------RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
I +N + + K + R +A N+++ NL E+ E L TF F
Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKF 252
Query: 146 GVI---------------------------LQTPKIMNMIKLYGKPI---RVNKASSHQK 175
GVI + MN I L + R K S ++
Sbjct: 253 GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312
Query: 176 NL--------------DVGANIFIGNLD--------------------PEIMRDPDTGNS 201
L GAN+++ NLD ++M +P G S
Sbjct: 313 ELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMS 371
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+GF F+ Y++ E + ++ M+G+ + +P+ ++ A +K+ +
Sbjct: 372 RGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDR 413
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 121/270 (44%), Gaps = 54/270 (20%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
GG + ++YVG LD V+++ +++LF Q G VV+V + +D ++ GYG++ +
Sbjct: 21 GGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNP 80
Query: 87 EDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAF 145
DA A+ ++N L G PIRV + G+ NIFI NLD +D K L+DTFSAF
Sbjct: 81 VDASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAF 140
Query: 146 GVILQTP---------------------------KIMNMIKLYGKPIRVNKASSHQKNLD 178
G IL + +N + L K + V Q+
Sbjct: 141 GSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERES 200
Query: 179 VGA-----NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFE 213
V N+F+ NL +MRD + G SK F F+N+ + +
Sbjct: 201 VSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGE-GKSKCFGFVNFENAD 259
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ S++A++G+ + + V A KK +
Sbjct: 260 DAARSVEALNGKKVDGKEWYVGKAQKKSER 289
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 103/227 (45%), Gaps = 58/227 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++V L + SE + +F + GP+ +V + +D ++ + +GF+ F +DA +++ +
Sbjct: 210 VFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKS-KCFGFVNFENADDAARSVEAL 268
Query: 97 NMIKLYGKPIRVNKASSH-QKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N K+ GK V KA ++ +++ GAN+++ NLD +D+ L
Sbjct: 269 NGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLK 328
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ F+ FG I ++MRDP+ G
Sbjct: 329 ELFTGFGTITSC---------------------------------------KVMRDPN-G 348
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
S+G F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ + R
Sbjct: 349 ISRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRRAR 395
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A +YV LDD + + + ELF G + + + +D +G GF+ F E+A A+
Sbjct: 311 ANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDP-NGISRGSGFVAFSSPEEAARALA 369
Query: 95 IMNMIKLYGKPIRVNKASSHQ 115
MN + KP+ V A +
Sbjct: 370 EMNGRMIVSKPLYVALAQRKE 390
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 121/270 (44%), Gaps = 54/270 (20%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
GG + ++YVG LD V+++ +++LF Q G VV+V + +D ++ GYG++ +
Sbjct: 21 GGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNP 80
Query: 87 EDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAF 145
DA A+ ++N L G PIRV + G+ NIFI NLD +D K L+DTFSAF
Sbjct: 81 VDASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAF 140
Query: 146 GVILQTP---------------------------KIMNMIKLYGKPIRVNKASSHQKNLD 178
G IL + +N + L K + V Q+
Sbjct: 141 GSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERES 200
Query: 179 VGA-----NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFE 213
V N+F+ NL +MRD + G SK F F+N+ + +
Sbjct: 201 VSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGE-GKSKCFGFVNFENAD 259
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ S++A++G+ + + V A KK +
Sbjct: 260 DAARSVEALNGKKVDGKEWYVGKAQKKSER 289
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 115/267 (43%), Gaps = 68/267 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++V L + SE + +F + GP+ +V + +D ++ + +GF+ F +DA +++ +
Sbjct: 210 VFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKS-KCFGFVNFENADDAARSVEAL 268
Query: 97 NMIKLYGKPIRVNKASSH-QKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N K+ GK V KA ++ +++ GAN+++ NLD +D+ L
Sbjct: 269 NGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLK 328
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ F+ FG I ++MRDP+ G
Sbjct: 329 ELFTGFGTITSC---------------------------------------KVMRDPN-G 348
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
S+G F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +R+ Q
Sbjct: 349 ISRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKE----------DRIARLQA 398
Query: 260 PLSQADRPHQLFADAPPPAPLPPPPPP 286
SQ + AP P+ PP P
Sbjct: 399 QFSQMQPMAMASSVAPRGMPMYPPGGP 425
Score = 40.4 bits (93), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A +YV LDD + + + ELF G + + + +D +G GF+ F E+A A+
Sbjct: 311 ANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDP-NGISRGSGFVAFSSPEEAARALA 369
Query: 95 IMNMIKLYGKPIRVNKASSHQKNL 118
MN + KP+ V A + +
Sbjct: 370 EMNGRMIVSKPLYVALAQRKEDRI 393
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 128/279 (45%), Gaps = 61/279 (21%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
++++Y G LD KV+E +++LF VV+V + +D+ + GY +I F DA A+
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAM 106
Query: 94 KIMNMIKLYGKPIRVNKASSH-QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+ +N L+ +PIR+ ++ L NIFI NLD +D K L++TFS+FG IL
Sbjct: 107 EALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCK 166
Query: 153 KIMNMI---KLYGKPIRVNKASSHQKNLD-------------VG---------------- 180
M++ K YG ++ K S Q +D VG
Sbjct: 167 VAMDVTGRSKGYGF-VQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPT 225
Query: 181 ---ANIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDA 217
N+++ NL EI MRD +GNS+ F F+N+ EA+ +
Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAAS 284
Query: 218 SIDAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERL 254
+++ M+G L + + V A KK + + R ER+
Sbjct: 285 AVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERI 323
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 73/282 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + ++E F G +++ + D VT +GYGF++F EE A A
Sbjct: 134 GKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAA 192
Query: 93 IKIMNMIKLYGKPI-------RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
I +N + + K + R +A N+++ NL E+ E L TF F
Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKF 252
Query: 146 GVI---------------------------LQTPKIMNMIKLYGKPI---RVNKASSHQK 175
GVI + MN I L + R K S ++
Sbjct: 253 GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312
Query: 176 NL--------------DVGANIFIGNLD--------------------PEIMRDPDTGNS 201
L GAN+++ NLD ++M +P G S
Sbjct: 313 ELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMS 371
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+GF F+ Y++ E + ++ M+G+ + +P+ ++ A +K+ +
Sbjct: 372 RGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDR 413
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 128/279 (45%), Gaps = 61/279 (21%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
++++Y G LD KV+E +++LF VV+V + +D+ + GY +I F DA A+
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAM 106
Query: 94 KIMNMIKLYGKPIRVNKASSH-QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+ +N L+ +PIR+ ++ L NIFI NLD +D K L++TFS+FG IL
Sbjct: 107 EALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCK 166
Query: 153 KIMNMI---KLYGKPIRVNKASSHQKNLD-------------VG---------------- 180
M++ K YG ++ K S Q +D VG
Sbjct: 167 VAMDVTGRSKGYGF-VQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPT 225
Query: 181 ---ANIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDA 217
N+++ NL EI MRD +GNS+ F F+N+ EA+ +
Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAAS 284
Query: 218 SIDAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERL 254
+++ M+G L + + V A KK + + R ER+
Sbjct: 285 AVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERI 323
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 73/282 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + ++E F G +++ + D VT +GYGF++F EE A A
Sbjct: 134 GKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAA 192
Query: 93 IKIMNMIKLYGKPI-------RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
I +N + + K + R +A N+++ NL E+ E L TF F
Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKF 252
Query: 146 GVI---------------------------LQTPKIMNMIKLYGKPI---RVNKASSHQK 175
GVI + MN I L + R K S ++
Sbjct: 253 GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312
Query: 176 NL--------------DVGANIFIGNLD--------------------PEIMRDPDTGNS 201
L GAN+++ NLD ++M +P G S
Sbjct: 313 ELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMS 371
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+GF F+ Y++ E + ++ M+G+ + +P+ ++ A +K+ +
Sbjct: 372 RGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDR 413
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 122/261 (46%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F+ +GP++++ + +D T+ Y +I F DA+ A+
Sbjct: 11 ASLYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLRYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN + G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG IL
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
Q MN + L + + V S ++ ++ A
Sbjct: 130 VVCDEHGSRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRREREAELRARAME 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ NL + +M+D + G+S+GF F+N+ E + ++
Sbjct: 190 FTNIYVKNLQVDMDEQGLQDLFSQFGKLLSVKVMKD-NNGHSRGFGFVNFEKHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
M+G+ + R + V A K+
Sbjct: 249 MDMNGKEVSGRQLYVGRAQKR 269
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 117/285 (41%), Gaps = 71/285 (24%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G I++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A AI MN + L + + V S ++ ++ A NI++ NL ++DE+ L D
Sbjct: 150 AAQQAISTMNGMLLNDRKVFVGHFKSRREREAELRARAMEFTNIYVKNLQVDMDEQGLQD 209
Query: 141 TFSAFGVILQTPKI---------------------------MNMIKLYGKPIRVNKASSH 173
FS FG +L + MN ++ G+ + V +A
Sbjct: 210 LFSQFGKLLSVKVMKDNNGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRQLYVGRAQKR 269
Query: 174 -----------------QKNLDVGANIFIGNLDPEI----MRD--------------PDT 198
+ N G N+++ NLD I +R +
Sbjct: 270 VERQNELKRKFEQMKQDRLNRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG 329
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALAQRKEER 374
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 41/210 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG LD V+++ +++LF Q G VV+V + +D T+ GYG++ F +DA A+
Sbjct: 35 TSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALD 94
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
++N L + IR+ + G ANIFI NLD +D K L+DTFS+FG+IL
Sbjct: 95 VLNFTPLNNRSIRIMYSHRDPSLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLILSC-- 152
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+I D +G SKG+ F+ + + E
Sbjct: 153 -------------------------------------KIATDA-SGLSKGYGFVQFDNEE 174
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
A+ +ID ++G + ++ + V + +K +
Sbjct: 175 AAQNAIDKLNGMLINDKQVYVGHFLRKQDR 204
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 123/323 (38%), Gaps = 82/323 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + + + F G +++ + D + +GYGF++F EE A A
Sbjct: 121 GTANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATD-ASGLSKGYGFVQFDNEEAAQNA 179
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA-----NIFIGNLDPEVDEKLLYDTFSAFGV 147
I +N + + K + V Q + + N+++ NL ++ L F +G
Sbjct: 180 IDKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMINFGEYGT 239
Query: 148 I--------------------LQTP-------KIMNMIKLYGKPIRVNKA---SSHQKNL 177
I + P + +N K K V KA S ++ L
Sbjct: 240 ITSALIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKFDDKEWYVGKAQKKSEREQEL 299
Query: 178 DV--------------GANIFIGNLDP--------------------EIMRDPDTGNSKG 203
G N+++ NLD ++MRDP TG S+G
Sbjct: 300 KGRFEQSIKEAADKYPGLNLYLKNLDDTISDEKLKEMFADYGTITSCKVMRDP-TGISRG 358
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F+ +++ E + ++ M+G+ +P+ V+ A +K+ ER Q SQ
Sbjct: 359 SGFVAFSTPEEATRALGEMNGKMFAGKPLYVALAQRKE----------ERRARLQAQFSQ 408
Query: 264 ADRPHQLFADAPPPAPLPPPPPP 286
RP + P PL PP P
Sbjct: 409 M-RPVAITPSVAPRMPLYPPGAP 430
>gi|168018573|ref|XP_001761820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686875|gb|EDQ73261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 119/262 (45%), Gaps = 54/262 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG L+ VSE ++E+F Q G VV++ + +D +T+ GY ++ + +DA A++
Sbjct: 24 TSLYVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLITRRSLGYSYVNYNNAQDATRALE 83
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
++N + GKPIR+ + G ANIFI NLD +D K L+DTF+AFG IL
Sbjct: 84 LLNFTGVNGKPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGNILSCKV 143
Query: 150 -----------------QTPKIMNMIK------LYGKPIRVNKASSHQKNLDVGA----- 181
Q N I+ L K + V Q+ G
Sbjct: 144 ATDASGQSKGYGFVQFEQEESAQNAIEKVNGMLLNDKQVFVGPFVRRQERDQAGGVSKFN 203
Query: 182 NIFIGNL-----DPE---------------IMRDPDTGNSKGFAFINYASFEASDASIDA 221
N+++ NL D E +MRD D G SK F F+N+ + + +++A
Sbjct: 204 NVYVKNLADVTTDDELKKVFGAWGPISSAVVMRDND-GKSKCFGFVNFEHPDDAAKAVEA 262
Query: 222 MHGQYLCNRPISVSYAFKKDSK 243
+ G+ + V A KK +
Sbjct: 263 LQGKKFDEKEWYVGRAQKKSER 284
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 76/339 (22%), Positives = 130/339 (38%), Gaps = 88/339 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + + + F G +++ + D Q+ +GYGF++F EE A A
Sbjct: 110 GTANIFIKNLDKSIDNKALHDTFAAFGNILSCKVATDASGQS-KGYGFVQFEQEESAQNA 168
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA-----NIFIGNLDPEVDEKLLYDTFSAFG- 146
I+ +N + L K + V Q+ G N+++ NL + L F A+G
Sbjct: 169 IEKVNGMLLNDKQVFVGPFVRRQERDQAGGVSKFNNVYVKNLADVTTDDELKKVFGAWGP 228
Query: 147 ----VILQ----TPKIMNMIK-------------LYGKPI--------RVNKASSHQKNL 177
V+++ K + L GK R K S + L
Sbjct: 229 ISSAVVMRDNDGKSKCFGFVNFEHPDDAAKAVEALQGKKFDEKEWYVGRAQKKSEREAEL 288
Query: 178 DV--------------GANIFIGNLDP--------------------EIMRDPDTGNSKG 203
G N+++ NLD ++MRD G SKG
Sbjct: 289 RAKFEQERKERIEKYQGVNLYLKNLDDTVDDEKIRELFAEYGTITSCKVMRD-HQGQSKG 347
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F+ ++S + + ++ M+G+ + N+P+ V+ A +K+ ER + Q +Q
Sbjct: 348 SGFVAFSSPDEATRAVTEMNGKMVGNKPLYVALAQRKE----------ERRMRLQAAFAQ 397
Query: 264 ADRPHQLFADAPPPAPLPPPPPP-----INIMGLPPPPP 297
R H + P P+ P P ++ G PP P
Sbjct: 398 M-RTH-VGPAVPTSLPMYHPGAPGMGPQMSYYGQHPPGP 434
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L++ F +GPV+++ + +D+VT+ GY ++ F+ DA A+
Sbjct: 136 ASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALD 195
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K LY+ FS FG IL +
Sbjct: 196 TMNFDIIKGKSIRLMWSQRDAYLRRSGIG-NVFIKNLDKSIDNKTLYEHFSGFGKIL-SS 253
Query: 153 KIMN----------------------MIKLYGKPI------------RVNKASSHQKNLD 178
K+M+ + ++ G+ + R ++ + +
Sbjct: 254 KVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGRLLKSCKVFVGRFKNRKDREAELRSKAS 313
Query: 179 VGANIFI----GNLDPEIMRD---------------PDTGNSKGFAFINYASFEASDASI 219
NI+I G++D E ++D G SKGF F+++ S EA+ ++
Sbjct: 314 EFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSRGKSKGFGFVSFDSHEAAKKAV 373
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 374 EEMNGRDINGQLIFVGRAQKK 394
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 106/274 (38%), Gaps = 71/274 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + ++E F G +++ + D Q +GY F+ F + AD A
Sbjct: 222 GIGNVFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRA 279
Query: 93 IKIMNMIKLYGKPI-------RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN L + R ++ + + NI+I N ++D++ L D FS +
Sbjct: 280 IEEMNGRLLKSCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKY 339
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN + G+ I R K Q
Sbjct: 340 GKTLSVKVMTDSRGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 399
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G +++ NLD I +R+ G SKG
Sbjct: 400 ELKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQQEGQSKG 459
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
F FI ++S E + ++ M+G++L ++PIS++ A
Sbjct: 460 FGFICFSSLEDATKAMIEMNGRFLGSKPISIALA 493
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV LDD + + + F G ++ V + + +G+GFI F EDA A+ M
Sbjct: 421 LYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQQ--EGQSKGFGFICFSSLEDATKAMIEM 478
Query: 97 NMIKLYGKPIRVNKASSH 114
N L KPI + A S+
Sbjct: 479 NGRFLGSKPISIALAQSY 496
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 103/209 (49%), Gaps = 42/209 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 53 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALE 112
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + GKP R+ + G NIFI NLD +D K L+DTF+AFG IL
Sbjct: 113 ELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILSC-- 170
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ +D ++G S+G+ F++Y + E
Sbjct: 171 -------------------------------------KVAQD-ESGGSRGYGFVHYETAE 192
Query: 214 ASDASIDAMHGQYLCNRPISVSYAF-KKD 241
A++A+I +++G L + + V + KKD
Sbjct: 193 AANAAIKSVNGMLLNEKKVFVGHHIPKKD 221
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 123/285 (43%), Gaps = 52/285 (18%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV +D + ++ ELF + G + + + +D+ + +G+GF+ ++ EDA+ A+ +
Sbjct: 236 IYVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKV-RGFGFVNYIRHEDANKAVDEL 294
Query: 97 NMIKLYGKPIRVNKAS-SHQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N I + + V +A H++ ++ G N+++ NL ++D++ L
Sbjct: 295 NDIDFKSQKLYVGRAQKKHEREEELRRQYEAQRQEKSAKYMGVNLYVKNLADDIDDEELR 354
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNL----------- 188
F A+G I + K+M P + + +K D G N +
Sbjct: 355 KVFEAYGSIT-SAKVMRDT----TPADQVENAEEEKKED-GENEAESSEEKKEDEKKEDG 408
Query: 189 DPEIMRDPDT----------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238
E+ + DT G SKGF F+ +++ + + ++ ++ + + +P+ V+ A
Sbjct: 409 TEELTKKLDTVTIGGEKKVLGKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQ 468
Query: 239 KKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFADAPPPAPLPPP 283
+K+ + S E + A+N Q Q A PP P
Sbjct: 469 RKEVR----KSQLEASIQARN---QVRMQQQATAGGIPPQAFMQP 506
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 114/260 (43%), Gaps = 56/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+++YVG L +VSE ++E+F Q G V N+ + +D T+ Y ++ + DA+ A+
Sbjct: 10 SSLYVGDLLPEVSEQTLFEVFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNAADAERALD 69
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+N + GKP R+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 70 TLNNTPIRGKPCRIMWSQRDPSLRKSGVG-NVFIKNLDKGIDHKALYDTFSAFGNILSCK 128
Query: 153 KI--------------------------------MNMIKLYGKPIRVNKASSHQKNLDVG 180
+ +N K++ P + +K +
Sbjct: 129 VVTDDNNSSKGFGFVHYESQDSADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEIKF- 187
Query: 181 ANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASID 220
N+F NL + IM D TG SKGFAF N+ S +A+ ++
Sbjct: 188 TNVFFKNLAEDVTSDQLKELLAPYGTITNVAIMLDEKTGKSKGFAFANFESADAAKNVVE 247
Query: 221 AMHGQYLCNRPISVSYAFKK 240
+G+ +P+ A KK
Sbjct: 248 IENGKVFHGKPLYAGRAQKK 267
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 83/215 (38%), Gaps = 49/215 (22%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++ L + V+ + EL G + NV + D T +G+ F F + A ++I
Sbjct: 190 VFFKNLAEDVTSDQLKELLAPYGTITNVAIMLDEKTGKSKGFAFANFESADAAKNVVEIE 249
Query: 97 NMIKLYGKPI---RVNKASSHQKNLD-------VGANIFIGNLDPEVDEKLLYDTFSAFG 146
N +GKP+ R K + L G N++I N+D +D L + FS FG
Sbjct: 250 NGKVFHGKPLYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFG 309
Query: 147 VILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAF 206
I +M+D SKGF F
Sbjct: 310 TITSAV---------------------------------------VMKDDKATTSKGFGF 330
Query: 207 INYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
+ Y S + + ++ M+G+ + +P+ V+ A +KD
Sbjct: 331 VCYTSPDEATRAVTEMNGRMIGTKPLYVALAQRKD 365
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 16 LQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTH 75
L+ +TK +G +Y+ +DD + + E+F Q G + + + KD T
Sbjct: 274 LKHTFETKYQG--------VNLYIKNIDDSIDNDKLREVFSQFGTITSAVVMKDDKATTS 325
Query: 76 QGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108
+G+GF+ + ++A A+ MN + KP+ V
Sbjct: 326 KGFGFVCYTSPDEATRAVTEMNGRMIGTKPLYV 358
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 60/275 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRVNKASSH--QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN L G+PIR+ + + VG NIFI NL+ +D K LYDTFS FG IL
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
Q MN + L + + V S ++ ++GA
Sbjct: 130 VACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N L ++MRD ++G+S+ F F+N+ E + ++
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
M+G+ + R + YA + + +R R
Sbjct: 249 VHMNGKEVSGRLL---YAGRAQKRVERQNELKRRF 280
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 18/136 (13%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
IYV L V E + +LF Q G +++V + +D + + +GF+ F E+A A+
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHS-RCFGFVNFEKHEEAQKAVV 249
Query: 95 IMNMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKL 137
MN ++ G+ + R K Q L G N+++ NLD +D+
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 138 LYDTFSAFGVILQTPK 153
L FS +GVI K
Sbjct: 310 LRKEFSPYGVITSAKK 325
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 52/186 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRVNKASSH--QKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN L G+PIR+ + + VG NIFI NL+ I + D
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
D S+GF F+++ + EA+ +I+ M+G L +R + V + FK S+ +R R
Sbjct: 130 VACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FK--SRREREAELGAR 186
Query: 254 LLAAQN 259
L N
Sbjct: 187 ALEFTN 192
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 60/275 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRVNKASSH--QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN L G+PIR+ + + VG NIFI NL+ +D K LYDTFS FG IL
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
Q MN + L + + V S ++ ++GA
Sbjct: 130 VACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N L ++MRD ++G+S+ F F+N+ E + ++
Sbjct: 190 FTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
M+G+ + R + YA + + +R R
Sbjct: 249 VHMNGKEVSGRLL---YAGRAQKRVERQNELKRRF 280
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 18/136 (13%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
IYV L V E + ELF Q G +++V + +D + + +GF+ F E+A A+
Sbjct: 191 TNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHS-RCFGFVNFEKHEEAQKAVV 249
Query: 95 IMNMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKL 137
MN ++ G+ + R K Q L G N+++ NLD +D+
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 138 LYDTFSAFGVILQTPK 153
L FS +GVI K
Sbjct: 310 LRKEFSPYGVITSAKK 325
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 52/186 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRVNKASSH--QKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN L G+PIR+ + + VG NIFI NL+ I + D
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
D S+GF F+++ + EA+ +I+ M+G L +R + V + FK S+ +R R
Sbjct: 130 VACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FK--SRREREAELGAR 186
Query: 254 LLAAQN 259
L N
Sbjct: 187 ALEFTN 192
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 125/279 (44%), Gaps = 56/279 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 59 ASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALE 118
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 119 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 178
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 179 AQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKAN 238
Query: 182 --NIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
N+++ N+ P++ D G +GF F+N+ + EA+ +++
Sbjct: 239 FTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQEGKPRGFGFVNFTTHEAAFKAVE 298
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
++G+ + + V A KK + + R A RL A
Sbjct: 299 DLNGKDFRGQELYVGRAQKKHEREEELRKSYEAARLEKA 337
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 113/247 (45%), Gaps = 28/247 (11%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+YV + V++ ELF + G V + + +D+ + +G+GF+ F E A A++
Sbjct: 241 NVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQEGKP-RGFGFVNFTTHEAAFKAVED 299
Query: 96 MNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N G+ + V +A H++ ++ G N++I NLD +VD++ L
Sbjct: 300 LNGKDFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKL 359
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
F+ FG I + K+M G+ V ++N N E + +
Sbjct: 360 RQMFAEFGPIT-SAKVMRDTPQEGEE-EVKDQEKDKENQKEAENEAESAESAEKKAEKKS 417
Query: 199 ----GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
G SKGF F+ +++ + + ++ M+ + + N+P+ V+ A +KD + S E
Sbjct: 418 DKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVR----KSQLEAS 473
Query: 255 LAAQNPL 261
+ A+N L
Sbjct: 474 IQARNQL 480
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 104/212 (49%), Gaps = 42/212 (19%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG L V+E+L++E+F GPV ++ + +D VT+ GY ++ F DA+ A+
Sbjct: 40 SLYVGDLAPDVNESLLFEIFSAVGPVASIRVCRDAVTRRSLGYSYVNFHQMADAERAMDT 99
Query: 96 MNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
MN + GKP R+ ++ + VG NIF+ NL+ +D K LYDTFS FG IL
Sbjct: 100 MNFSMIKGKPCRIMWSQRDPSLRRSGVG-NIFVKNLNEAIDNKQLYDTFSLFGNILSC-- 156
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+++ D + G S G+ +++Y + E
Sbjct: 157 -------------------------------------KVVTDREGGVSMGYGYVHYETAE 179
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
A++A+I+ + G + + + V + +++ + D
Sbjct: 180 AANAAIEKLDGMLIDGQEVQVGHFMRRNDRPD 211
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/285 (20%), Positives = 114/285 (40%), Gaps = 74/285 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I+V L++ + +++ F G +++ + DR GYG++ + E A+ A
Sbjct: 125 GVGNIFVKNLNEAIDNKQLYDTFSLFGNILSCKVVTDREGGVSMGYGYVHYETAEAANAA 184
Query: 93 IKIMNMIKLYGKPIRVNK--ASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL- 149
I+ ++ + + G+ ++V + + ++D N +I N+ E D+ L F+ FG +L
Sbjct: 185 IEKLDGMLIDGQEVQVGHFMRRNDRPDIDSWTNCYIKNVPYEWDDARLNQEFAQFGEVLS 244
Query: 150 ---------------------QTPKIMNMIKLYGKPI----------------RVNKASS 172
+ + L GK R K S
Sbjct: 245 ATVSREDTNQTLGFGFINFAEHESAVAAVEALNGKEYTTTLDGEEITQQIYVGRAQKKSE 304
Query: 173 HQKNLDV--------------GANIFIGNLD--------------------PEIMRDPDT 198
++ L G N+++ NLD +M+D
Sbjct: 305 RERELRAKFEAEKMDRISKFQGVNLYVKNLDDSVTDDMLRDEFAVMGTITSARVMKDAKD 364
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G S+GF F+ Y++ E S +++ M+G+ + N+PI V+ A +++ +
Sbjct: 365 GRSRGFGFVCYSTPEESTRAVNEMNGKLIANKPIFVALAQRREVR 409
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 115/266 (43%), Gaps = 60/266 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 56 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALE 115
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 116 ELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSCKV 175
Query: 153 --------------------------KIMNMIKLYGKPI----------RVNKASSHQKN 176
K +N + L K + R++K + N
Sbjct: 176 AQDEHGNSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKAN 235
Query: 177 LDVGANIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDA 217
NI++ N+DPE D G S+GF F+NY E ++
Sbjct: 236 F---TNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKSRGFGFVNYIRHEDANK 292
Query: 218 SIDAMHGQYLCNRPISVSYAFKKDSK 243
+++ ++ + + V A KK +
Sbjct: 293 AVEELNNSDFKGQALYVGRAQKKHER 318
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/286 (20%), Positives = 122/286 (42%), Gaps = 47/286 (16%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
IYV +D + ++ LF + G + + + D+ ++ +G+GF+ ++ EDA+ A++
Sbjct: 238 NIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKS-RGFGFVNYIRHEDANKAVEE 296
Query: 96 MNMIKLYGKPIRVNKAS-SHQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N G+ + V +A H++ ++ G N+++ NL E+D+ L
Sbjct: 297 LNNSDFKGQALYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDDEL 356
Query: 139 YDTFSAFGVILQTPKIMNMI--------KLYGKPIRVNKASSHQKNLDVGANIFIGNLD- 189
F +G I + + I K + K S ++ D G G
Sbjct: 357 RKIFEPYGAITSAKVMRDTIPADEVAASKKDEEKSDEEKQSDDEEKKDEGDKNEEGEKKE 416
Query: 190 ---PEIMRDPDT----------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSY 236
++++ DT G SKGF F+ +++ + + ++ ++ + + +P+ V+
Sbjct: 417 GDVEDVIKKLDTITIGGEKKILGKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVAL 476
Query: 237 AFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFADAPPPAPLPP 282
A +K+ + +L A+ +Q Q A A PP + P
Sbjct: 477 AQRKEVR-------KSQLEASIQARNQVRMQQQGPAGAIPPQFMQP 515
>gi|156846854|ref|XP_001646313.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
gi|156116988|gb|EDO18455.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
Length = 580
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 109/231 (47%), Gaps = 48/231 (20%)
Query: 27 GGESGDG--DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFM 84
GG SG A++YVG LD VSE L++++F GPV ++ + +D VT+T GY ++ F
Sbjct: 41 GGNSGTAVDSASLYVGELDPSVSEALLYDIFSPIGPVSSIRVCRDAVTKTSLGYAYVNFN 100
Query: 85 GEEDADYAIKIMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDT 141
+ AI+ +N + GKP R+ + S +KN NIFI NL ++D K L+DT
Sbjct: 101 DHDSGKVAIEKLNYTPIKGKPCRIMWSQRDPSMRKN--GSGNIFIKNLHADIDNKALHDT 158
Query: 142 FSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201
FS FG IL +I D +TG S
Sbjct: 159 FSVFGNILSC---------------------------------------KIATD-ETGKS 178
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAA 251
KGF F+++ A+ +IDA++G L + V ++ +KD + + A
Sbjct: 179 KGFGFVHFEEDTAASEAIDAINGMMLNGLEVYVAAHVSRKDRESKFEAAKA 229
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 106/252 (42%), Gaps = 59/252 (23%)
Query: 10 GISTPCLQSLSQTKLEGGGESGDGDAT-IYVGGLDDKVSETLMWELFVQSGPVVNVHMPK 68
G+ +S+ E E+ + T +YV +D + +E ELF + GP+ ++ M K
Sbjct: 206 GLEVYVAAHVSRKDRESKFEAAKANFTNVYVKNVDLEATEEEFEELFKKFGPITSISMEK 265
Query: 69 DRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLD--------- 119
D + +G+GF+ + E A A+ +N ++ + + V +A + L
Sbjct: 266 DSEGK-FRGFGFVNYENHESAAKAVDELNDLEFKSQKLYVGRAQKKYERLQELKKQYEEA 324
Query: 120 --------VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKAS 171
G N+F+ NLD +D++LL F +FG I
Sbjct: 325 KLEKMAKYQGVNLFVKNLDDTIDDELLKKEFESFGTITSV-------------------- 364
Query: 172 SHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRP 231
++MR+ +TG SKGF F+ ++S E + +I + Q + +P
Sbjct: 365 -------------------KVMRN-ETGKSKGFGFVCFSSPEEATRAITEKNQQIVAGKP 404
Query: 232 ISVSYAFKKDSK 243
+ V+ A +KD +
Sbjct: 405 LYVALAQRKDVR 416
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 128/261 (49%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L++ F +GPV+++ + +D+VT+ GY ++ F+ DA A+
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALD 69
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K LY+ FS FG IL +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIG-NVFIKNLDKSIDNKTLYEHFSGFGKIL-SS 127
Query: 153 KIMN----------------------MIKLYGKPI------------RVNKASSHQKNLD 178
K+M+ + ++ GK + R ++ + +
Sbjct: 128 KVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKSCKVFVGRFKNRKDREAELRSKAS 187
Query: 179 VGANIFI----GNLDPEIMRD---------------PDTGNSKGFAFINYASFEASDASI 219
NI+I G++D E ++D +G SKGF F+++ S EA+ ++
Sbjct: 188 EFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAV 247
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 248 EEMNGRDINGQLIFVGRAQKK 268
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 105/274 (38%), Gaps = 71/274 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + ++E F G +++ + D Q +GY F+ F + AD A
Sbjct: 96 GIGNVFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRA 153
Query: 93 IKIMNMIKLYGKPI-------RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN L + R ++ + + NI+I N ++D++ L D FS +
Sbjct: 154 IEEMNGKLLKSCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKY 213
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN + G+ I R K Q
Sbjct: 214 GKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 273
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G +++ NLD I +R+ G SKG
Sbjct: 274 ELKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQQEGQSKG 333
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
F FI ++S E + ++ M+G +L ++PIS++ A
Sbjct: 334 FGFICFSSLEDATKAMIEMNGCFLGSKPISIALA 367
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV LDD + + + F G ++ V + + +G+GFI F EDA A+ M
Sbjct: 295 LYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQQ--EGQSKGFGFICFSSLEDATKAMIEM 352
Query: 97 NMIKLYGKPIRVNKASSH 114
N L KPI + A S+
Sbjct: 353 NGCFLGSKPISIALAQSY 370
>gi|428673176|gb|EKX74089.1| polyadenylate-binding protein, putative [Babesia equi]
Length = 663
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 113/242 (46%), Gaps = 49/242 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E+F GPV ++ + +D +T+ GY ++ + +DA+ A++
Sbjct: 31 ASLYVGDLQPDVTEAILYEVFNSVGPVSSIRVCRDSITRKSLGYAYVNYYSVQDAEAALE 90
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N I + G P R+ ++ GA NIF+ NLD +D K YDTFS FG IL
Sbjct: 91 SLNYIDIKGHPTRIMWSNKDPTLRKSGAGNIFVKNLDRSIDTKAFYDTFSHFGPILSCKV 150
Query: 154 IM---------------------------NMIKLYGKPIRVN----KASSHQKNLDVGAN 182
M N + + GK + V+ K ++DV N
Sbjct: 151 AMDENGVSKGYGFVHYDTEESAKEAIEKVNGMVIGGKKVEVSPFIKKQDRDPASVDVFTN 210
Query: 183 IFIGNL----DPEIMRD-------------PDTGNSKGFAFINYASFEASDASIDAMHGQ 225
+++ N D E ++ + G + FAF+N+A E + +++A++G
Sbjct: 211 LYVRNFPVSWDEEALKQFLDKYGEITSMMIKEDGKGRKFAFVNFAEPEMAKEAVEALNGT 270
Query: 226 YL 227
L
Sbjct: 271 KL 272
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 114/282 (40%), Gaps = 70/282 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I+V LD + ++ F GP+++ + D +GYGF+ + EE A A
Sbjct: 117 GAGNIFVKNLDRSIDTKAFYDTFSHFGPILSCKVAMDE-NGVSKGYGFVHYDTEESAKEA 175
Query: 93 IKIMNMIKLYGKPIRVN----KASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
I+ +N + + GK + V+ K ++DV N+++ N DE+ L +G I
Sbjct: 176 IEKVNGMVIGGKKVEVSPFIKKQDRDPASVDVFTNLYVRNFPVSWDEEALKQFLDKYGEI 235
Query: 149 L-------------------------QTPKIMNMIKLY--GKPIRV----NKA------- 170
+ + +N KL +P+ V +KA
Sbjct: 236 TSMMIKEDGKGRKFAFVNFAEPEMAKEAVEALNGTKLEEGSEPLLVCPHQDKAKRQAFLK 295
Query: 171 SSHQKNLD------VGANIFIGNLDP--------------------EIMRDPDTGNSKGF 204
S + LD +N++I NLD +IMRD +G S+GF
Sbjct: 296 SQYISGLDGSIASKASSNLYIKNLDDSFTDESLQELFGQFGSITSCKIMRDA-SGVSRGF 354
Query: 205 AFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
F+ ++ E + +I MH + + +P+ V A KK+ + R
Sbjct: 355 GFVCFSRPEEATKAIAGMHLKIVKGKPLYVGLAEKKEQRLSR 396
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
G + + +Y+ LDD ++ + ELF Q G + + + +D + +G+GF+ F
Sbjct: 304 GSIASKASSNLYIKNLDDSFTDESLQELFGQFGSITSCKIMRD-ASGVSRGFGFVCFSRP 362
Query: 87 EDADYAIKIMNMIKLYGKPIRVNKASSHQKNL 118
E+A AI M++ + GKP+ V A ++ L
Sbjct: 363 EEATKAIAGMHLKIVKGKPLYVGLAEKKEQRL 394
>gi|71018821|ref|XP_759641.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
gi|74701642|sp|Q4P8R9.1|PABP_USTMA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46099399|gb|EAK84632.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
Length = 651
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 112/264 (42%), Gaps = 55/264 (20%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ ++YVG LD V+E +++E+F G V ++ + +D VT+ GY ++ F+ D + A+
Sbjct: 46 NTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAM 105
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+ +N + +P R+ + G NIFI NLD +D K L+DTF+AFG IL
Sbjct: 106 EQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCK 165
Query: 153 KIMNMIKLYGKPI--------------RVNKASSHQKNLDVG------------------ 180
N G VN + K + VG
Sbjct: 166 VATNETGSLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRAN 225
Query: 181 -ANIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASI 219
N++ N+DPE+ RD D G SKGF F+N+ + ++
Sbjct: 226 FTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDED-GKSKGFGFVNFEDHNEAQKAV 284
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
D +H + + V+ A KK +
Sbjct: 285 DELHDSDFKGQKLFVARAQKKSER 308
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 102/240 (42%), Gaps = 61/240 (25%)
Query: 21 QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGF 80
Q K+E E+ +Y +D +V++ +LF + G + + + +D ++ +G+GF
Sbjct: 216 QAKIE---ETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKS-KGFGF 271
Query: 81 IEFMGEEDADYAIKIMNMIKLYGKPI---RVNKASSHQKNLDV--------------GAN 123
+ F +A A+ ++ G+ + R K S ++ L G N
Sbjct: 272 VNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVN 331
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+++ N+ D++ L + F+ FG I
Sbjct: 332 LYLKNIPESYDDERLREEFAPFGAITSC-------------------------------- 359
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+IMR P +G S+GF F+ Y++ E ++ ++ M+G+ L NRP+ V+ A +KD +
Sbjct: 360 -------KIMRAP-SGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVR 411
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 41/210 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG L+ V+++ +++LF Q G VV+V + +D ++ GYG++ + +DA A++
Sbjct: 25 TSLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALE 84
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
++N + G PIRV + GA NIFI NLD +D K L+DTFS FG IL
Sbjct: 85 VLNFTPVNGSPIRVMYSHRDPSVRKSGAGNIFIKNLDKAIDHKALHDTFSVFGNILSC-- 142
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ DP +G SKG+ F+ + S E
Sbjct: 143 -------------------------------------KVATDP-SGQSKGYGFVQFDSEE 164
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
A+ +I+ ++G L ++ + V +K +
Sbjct: 165 AAQKAIEKLNGMLLNDKQVYVGPFLRKQER 194
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 114/284 (40%), Gaps = 73/284 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + + F G +++ + D Q+ +GYGF++F EE A A
Sbjct: 111 GAGNIFIKNLDKAIDHKALHDTFSVFGNILSCKVATDPSGQS-KGYGFVQFDSEEAAQKA 169
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAFG 146
I+ +N + L K + V Q+ D N+F+ NL E+ L F FG
Sbjct: 170 IEKLNGMLLNDKQVYVGPFLRKQER-DTATDKTRFNNVFVKNLSETTAEEDLNKAFGEFG 228
Query: 147 VILQTPKI---------------------------MNMIKLYGKPIRVNKAS-SHQKNLD 178
I + +N K K V KA +++ ++
Sbjct: 229 TITSVVVMRDGDGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVE 288
Query: 179 V----------------GANIFIGNLDPEI--------------------MRDPDTGNSK 202
+ GAN++I NLD I MRDP+ G S+
Sbjct: 289 LKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPN-GISR 347
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
G F+ +++ E + ++ M+G+ + ++P+ V+ A +K+ + R
Sbjct: 348 GSGFVAFSTPEEASRALLEMNGKMVASKPLYVALAQRKEDRRAR 391
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 105/216 (48%), Gaps = 44/216 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG LD V+++ ++++F Q G VV+V + +D T+ GYG++ + +DA A+
Sbjct: 12 TSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 71
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
++N L KPIR+ + G ANIFI NLD +D K L+DTFS+FG IL
Sbjct: 72 VLNFTPLNNKPIRIMYSHRDPSIRKSGMANIFIKNLDKGIDHKALHDTFSSFGNILSC-- 129
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ D +G SKG+ F+ + S E
Sbjct: 130 -------------------------------------KVATDA-SGQSKGYGFVQFDSEE 151
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
A+ +ID ++G + ++ + V + +K DR G+
Sbjct: 152 AAQNAIDKLNGMLVNDKQVYVGHFLRKQ---DRDGA 184
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 118/274 (43%), Gaps = 69/274 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++V L + ++ + +F + G + + + +D ++ + +GF+ F +DA A++ +
Sbjct: 193 VFVKNLAESTTDEELKNIFAEHGAITSAVVMRDADGKS-KCFGFVNFESADDAAKAVEAL 251
Query: 97 NMIKLYGKPIRVNKASSH-QKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N K+ G+ V KA ++ L++ G N++I NLD ++++ L
Sbjct: 252 NGKKIDGEEWYVGKAQKKSERELELKGRFEQSMKETVDKFQGLNLYIKNLDDSINDEKLK 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ FS FG I ++MRDP +G
Sbjct: 312 ELFSDFGAITSC---------------------------------------KVMRDP-SG 331
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL----- 254
S+G F+ +++ E + ++ M+G+ L ++P+ V+ A +K+ + R + ++
Sbjct: 332 ISRGSGFVAFSTPEEASRALAEMNGKMLISKPLYVALAQRKEERRARLQAQFSQMRPVTM 391
Query: 255 ---LAAQNPLSQADRP---HQLFADAPPPAPLPP 282
+A++ P+ P Q PPA +PP
Sbjct: 392 APSVASRMPMYPPGAPGMGQQFLYGQGPPAMMPP 425
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 107/224 (47%), Gaps = 48/224 (21%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D A++YVG L+ V+E ++E+F G V ++ + +D VT+ GY ++ F ED +
Sbjct: 47 DTSASLYVGELNPSVNEASLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEK 106
Query: 92 AIKIMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
AI +N + G+P R+ + S ++N + NIFI NL P +D K L+DTFSAFG I
Sbjct: 107 AIDDLNYSLIDGRPCRIMWSQRDPSLRRNGE--GNIFIKNLHPAIDNKALHDTFSAFGKI 164
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFIN 208
L ++ D + GNSK F F++
Sbjct: 165 LSC---------------------------------------KVATD-EQGNSKCFGFVH 184
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
Y + EA+ A+I+ ++G L +R + Y K SK DR E
Sbjct: 185 YETAEAARAAIENVNGMLLNDREV---YVGKHVSKKDRESKFEE 225
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 115/297 (38%), Gaps = 73/297 (24%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+YV +D SE M LF G + ++H+ KD ++ +G+GF+ F E A A++
Sbjct: 231 TNVYVKNIDLGFSEEEMRNLFEPYGKITSLHLEKDAEGKS-KGFGFVNFESHEAAVKAVE 289
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLD-----------------VGANIFIGNLDPEVDEKL 137
+N + G+ + V +A ++ ++ G N+F+ NLD +D
Sbjct: 290 ELNDKDINGQNLYVGRAQKKRERIEELKRQYETARLEKLSKYQGVNLFVKNLDDSIDSVK 349
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + F FG I +M D +
Sbjct: 350 LEEEFKPFGTITSA---------------------------------------RVMVD-E 369
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR--HGSAAERLL 255
G SKGF F+ ++S E + +I M+ + +P+ V+ A +KD + + A +
Sbjct: 370 HGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKPLYVALAQRKDVRRSQLEQQIQARNQM 429
Query: 256 AAQNPLSQADRPHQ-----LFADAP---PP-----APLPPPPPPINIMGLPPPPPSG 299
QN + P Q + P PP AP P P P + + PPP G
Sbjct: 430 RMQNAAATGGIPGQFIPPMFYGQQPGFFPPNGRGSAPFPGPNPQMMVPRGQIPPPQG 486
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 121/266 (45%), Gaps = 58/266 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG L +++ + F + GPV H+ +D ++ GYG++ F +DA+ A++
Sbjct: 2 TSLYVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSRKSLGYGYVNFEDPKDAERALE 61
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
MN + G+PIR+ + G NIFI NL +++K LYDTFS FG IL
Sbjct: 62 QMNYEVVMGRPIRIMWSQRDPSLRKSGLGNIFIKNLAKTIEQKELYDTFSLFGRILSCKI 121
Query: 154 IM---------------------------NMIKLYGKPI-------RVNKASSHQKNLDV 179
M N + + GK + R ++ S ++K
Sbjct: 122 AMDENGNSKGYGFVHFENEECAKRAIQKVNNMSICGKVVYVGNFIPRSDRKSQNRK--QK 179
Query: 180 GANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N PE +M+D + G SKGF F+ Y + E ++A++
Sbjct: 180 FNNIYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSE-GKSKGFGFVCYLNPEHAEAAV 238
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD 245
AMHG+ + R + S A +K+ + +
Sbjct: 239 AAMHGKEIGGRSLYASRAQRKEERQE 264
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/226 (19%), Positives = 96/226 (42%), Gaps = 61/226 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV + + + E+F + G + + + KD ++ +G+GF+ ++ E A+ A+ M
Sbjct: 183 IYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSEGKS-KGFGFVCYLNPEHAEAAVAAM 241
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV---------------GANIFIGNLDPEVDEKLL 138
+ ++ G+ + R + Q+ L + N+++ NLD E+D++ L
Sbjct: 242 HGKEIGGRSLYASRAQRKEERQEELKLRLEKQKAERRSKYVSNVNLYVKNLDDEIDDERL 301
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
+ FS +G I + K+M D+
Sbjct: 302 KEIFSKYGPI-SSAKVMT----------------------------------------DS 320
Query: 199 GN-SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
N SKGF F+ + + E + ++ +G+ ++P+ V+ A +K+ +
Sbjct: 321 NNRSKGFGFVCFTNPEQATKAVTEANGRVEYSKPLYVAIAQRKEDR 366
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ +YV LDD++ + + E+F + GP+ + + D ++ +G+GF+ F E A A+
Sbjct: 284 NVNLYVKNLDDEIDDERLKEIFSKYGPISSAKVMTDSNNRS-KGFGFVCFTNPEQATKAV 342
Query: 94 KIMNMIKLYGKPIRV 108
N Y KP+ V
Sbjct: 343 TEANGRVEYSKPLYV 357
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 127/262 (48%), Gaps = 59/262 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L+++ F GPV+++ + +D VT+ GY ++ F+ DA A+
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K LY+ FSAFG IL +
Sbjct: 70 TMNFDLIKGKSIRLMWSQRDAYLRKSGIG-NVFIKNLDKSIDNKTLYEHFSAFGKIL-SS 127
Query: 153 KIM---------------NMI-------KLYGKPI------------RVNKASSHQKNLD 178
K+M N I ++ G + R ++ + Q +
Sbjct: 128 KVMSDDQGSRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKAN 187
Query: 179 VGANIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDAS 218
N++I N L ++MRD +G SKGF F+++ S EA+ +
Sbjct: 188 EFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDS-SGKSKGFGFVSFDSHEAAKKA 246
Query: 219 IDAMHGQYLCNRPISVSYAFKK 240
++ M+G+ + + + V A KK
Sbjct: 247 VEEMNGKDINGQLLFVGRAQKK 268
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 59/222 (26%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+Y+ D + + + E+F + G ++V + +D ++ +G+GF+ F E A A++
Sbjct: 190 TNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKS-KGFGFVSFDSHEAAKKAVE 248
Query: 95 IMNMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKL 137
MN + G+ + R K + Q L G ++I NLD +D++
Sbjct: 249 EMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRCQGVKLYIKNLDETIDDEK 308
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L FS+FG I + K+M +
Sbjct: 309 LRREFSSFGSISRV-KVM----------------------------------------QE 327
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239
G SKGF I ++S E + ++ M+G+ L ++P++++ A K
Sbjct: 328 EGRSKGFGLICFSSPEEATKAMTEMNGRILGSKPLNIALAQK 369
>gi|318087158|gb|ADV40171.1| putative polyA binding protein cytoplasmic 1 isoform 1 [Latrodectus
hesperus]
Length = 217
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 43/223 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L + V+E +++E F +GPV+++ + +D + + GY ++ F DA+ A+
Sbjct: 13 ASLYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALD 72
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 73 TMNFDMVKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTFSAFGNILSC- 130
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ D ++ NSKG+ F+++ +
Sbjct: 131 --------------------------------------KVATDEES-NSKGYGFVHFETE 151
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLL 255
EA++ +I ++G L R + V + + + G A R +
Sbjct: 152 EAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLGQKARRFM 194
>gi|195150897|ref|XP_002016387.1| GL11548 [Drosophila persimilis]
gi|194110234|gb|EDW32277.1| GL11548 [Drosophila persimilis]
Length = 640
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 128/265 (48%), Gaps = 57/265 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E ++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN + KPIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 62 TMNFDLIRNKPIRIMWSQRDPSLRRSGVG-NVFIKNLDKGIDNKAIYDTFSAFGNILSCK 120
Query: 150 -----------------QTPKIMNM-------IKLYGKPIRVNK---ASSHQKNLDVGA- 181
+T + N + L GK + V K +K L A
Sbjct: 121 VAIDEKGNSKGYGFVHFETEEAANTSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAK 180
Query: 182 ---NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASI 219
N+++ N D E +++ + G SKGF F+ Y + EA++A++
Sbjct: 181 LFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAV 240
Query: 220 DAMHGQYLC-NRPISVSYAFKKDSK 243
A++G+ + ++ + V+ A KK +
Sbjct: 241 QALNGKDMGESKSLYVARAQKKAER 265
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 116/284 (40%), Gaps = 76/284 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D + +GYGF+ F EE A+ +
Sbjct: 88 GVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKVAIDEKGNS-KGYGFVHFETEEAANTS 146
Query: 93 IKIMNMIKLYGKPIRVNK---ASSHQKNLDVGA----NIFIGNLDPEVDEKLLYDTFSAF 145
I +N + L GK + V K +K L A N+++ N + D++ L + F +
Sbjct: 147 IDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 146 GVILQTPKIMN-----------------------MIKLYGKPI---------RVNKASSH 173
G I + K+M+ + L GK + R K +
Sbjct: 207 GKIT-SYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGESKSLYVARAQKKAER 265
Query: 174 QKNLD--------------VGANIFIGNLD--------------------PEIMRDPDTG 199
Q+ L G N+++ NLD ++M D + G
Sbjct: 266 QQELKRKFEELKKKRHDSVFGVNLYVKNLDDTIDDERLRKDFSMYGTITSAKVMTDEE-G 324
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ + S + ++ ++G+ + ++P+ V+ A +K+ +
Sbjct: 325 RSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALAQRKEER 368
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 58/288 (20%)
Query: 26 GGGESGDG-DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFM 84
G E+G ++++YVG L+ V+E +++LF Q VV++ + +D+ + GY ++ F
Sbjct: 13 GTAEAGQFPNSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFS 72
Query: 85 GEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFS 143
+DA A++++N L GK IR+ + G AN+FI NLD +D K L +TF+
Sbjct: 73 NPQDAANAMELLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFA 132
Query: 144 AFGVILQTP---------------------------KIMNMIKLYGKPIRVNKASSHQKN 176
+FG +L +N + + K + V + HQ+
Sbjct: 133 SFGPVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQER 192
Query: 177 LDVG-----ANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYAS 211
++ N+++ NL +M+D +G SKGF F+N+ S
Sbjct: 193 IEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKD-QSGKSKGFGFVNFQS 251
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
+++ A+++ ++G ++ V Y + KG+R R +N
Sbjct: 252 PDSAAAAVEKLNGTTFNDK---VWYVGRAQRKGEREAELKARFEQERN 296
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 97/227 (42%), Gaps = 58/227 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV L + S+ + + F G + + + KD+ ++ +G+GF+ F + A A++ +
Sbjct: 204 VYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKS-KGFGFVNFQSPDSAAAAVEKL 262
Query: 97 NMIKLYGKPIRVNKAS-------------SHQKNLDV----GANIFIGNLDPEVDEKLLY 139
N K V +A ++N AN+++ NLD ++D++ L
Sbjct: 263 NGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLK 322
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ FS FG I + K+M LD + G
Sbjct: 323 ELFSEFGSIT-SCKVM--------------------------------LDQQ-------G 342
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
SKG F+ +++ E + +++ M+G+ + +P+ V+ A +++ + R
Sbjct: 343 LSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYVAVAQRREERKAR 389
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A +Y+ LDDK+ + + ELF + G + + + D+ +G GF+ F E+A A+
Sbjct: 305 ANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQ-QGLSKGSGFVAFSTPEEASRALN 363
Query: 95 IMNMIKLYGKPIRVNKASSHQK 116
MN + KP+ V A ++
Sbjct: 364 GMNGKMIGKKPLYVAVAQRREE 385
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 45/224 (20%)
Query: 16 LQSLS-QTKLEGGGESGDGD---ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRV 71
L++LS Q K EG E + A++YVG LD VSE ++++F G V ++ + +D +
Sbjct: 12 LENLSLQDKQEGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAI 71
Query: 72 TQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLD 130
T+T GY ++ F + A AI+ +N + GK R+ + GA NIFI NL
Sbjct: 72 TKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLH 131
Query: 131 PEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 190
P++D K LYDTFS FG IL +
Sbjct: 132 PDIDNKALYDTFSVFGNILSS--------------------------------------- 152
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234
++ D +TG SKGF ++++ E++ +IDA++G L + I V
Sbjct: 153 KVATD-ETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYV 195
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 104/243 (42%), Gaps = 59/243 (24%)
Query: 19 LSQTKLEGGGESGDGDAT-IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG 77
LS+ + E E + T +Y+ ++ + ++ EL + G +V + + + ++G
Sbjct: 199 LSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGE-NKG 257
Query: 78 YGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS---SHQKNLDV-------------- 120
+GF+ F+ EDA ++ +N + G+P+ VN+A Q+ L
Sbjct: 258 FGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQ 317
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVG 180
G N+FI NLD +D+K L + F+ +G I + K+M
Sbjct: 318 GINLFIKNLDDSIDDKKLEEEFAPYGTIT-SAKVMTT----------------------- 353
Query: 181 ANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
+ G SKGF F+ +++ E + +I + Q + +P+ V+ A +K
Sbjct: 354 ----------------ENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 397
Query: 241 DSK 243
D +
Sbjct: 398 DVR 400
>gi|84998214|ref|XP_953828.1| polyadenylate (poly(A)) binding protein [Theileria annulata]
gi|65304825|emb|CAI73150.1| polyadenylate (poly(A)) binding protein, putative [Theileria
annulata]
Length = 664
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 113/219 (51%), Gaps = 10/219 (4%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E+F GPV ++ + +D VT+ GY ++ + +DA+ A++
Sbjct: 27 ASLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEAALE 86
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N I++ G P R+ ++ GA NIF+ NLD +D K LYDTFS FG IL
Sbjct: 87 SLNYIEIKGHPTRIMWSNRDPSLRRSGAGNIFVKNLDKSIDTKSLYDTFSHFGPILSCKV 146
Query: 154 IMN---MIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI---MRDPDTGNSKGFAFI 207
++ K YG N+ S+ + V + IG E+ +R D + F +
Sbjct: 147 AVDASGASKRYGFVHYENEESAREAIEKVNG-MLIGGKRVEVAPFLRKQDREGEEVFTNL 205
Query: 208 NYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
+F A D + +A+ Q+L S K+DSKG R
Sbjct: 206 YVRNFPA-DWNEEALR-QFLEKYGEITSMMLKEDSKGRR 242
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 115/275 (41%), Gaps = 68/275 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I+V LD + +++ F GP+++ + D + + YGF+ + EE A A
Sbjct: 113 GAGNIFVKNLDKSIDTKSLYDTFSHFGPILSCKVAVD-ASGASKRYGFVHYENEESAREA 171
Query: 93 IKIMNMIKLYGKPIRVNKASSHQ--KNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI-- 148
I+ +N + + GK + V Q + +V N+++ N + +E+ L +G I
Sbjct: 172 IEKVNGMLIGGKRVEVAPFLRKQDREGEEVFTNLYVRNFPADWNEEALRQFLEKYGEITS 231
Query: 149 ----------------LQTPKI-------MNMIKL--YGKPIRV---------------- 167
+ P++ +N +KL +P+ V
Sbjct: 232 MMLKEDSKGRRFAFVNYKEPEVAKEVVNTLNDLKLDESSEPLLVCPHQDKAKRQNLLRAQ 291
Query: 168 -NKASSHQKNLDVGANIFIGNLD--------------------PEIMRDPDTGNSKGFAF 206
N +S Q++ V +N++I NLD ++M D + +S+GF F
Sbjct: 292 FNNSSMGQEDKRVTSNLYIKNLDDSFDDESLGELFKPFGTITSSKVMLDAN-NHSRGFGF 350
Query: 207 INYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
+ + + + + +I AMH + + +P+ V A K+D
Sbjct: 351 VCFTNPQEATKAIAAMHLKLVKGKPLYVGLAEKRD 385
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
G E + +Y+ LDD + + ELF G + + + D + +G+GF+ F
Sbjct: 298 GQEDKRVTSNLYIKNLDDSFDDESLGELFKPFGTITSSKVMLDANNHS-RGFGFVCFTNP 356
Query: 87 EDADYAIKIMNMIKLYGKPIRV 108
++A AI M++ + GKP+ V
Sbjct: 357 QEATKAIAAMHLKLVKGKPLYV 378
>gi|50289655|ref|XP_447259.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526568|emb|CAG60192.1| unnamed protein product [Candida glabrata]
Length = 416
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 46/230 (20%)
Query: 14 PCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQ 73
P + S TK GG E+ D +YVG LD ++E L+ + F GP+ NV + +D +
Sbjct: 41 PSVVPASATK--GGRETSD--RVLYVGNLDKSITEDLLKQYFQAGGPIQNVKIIED-MKN 95
Query: 74 THQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNL--DVGANIFIGNLDP 131
+ Y F+E++ DA+ A++ +N ++L K +++N A Q+ D N+F+G+L+
Sbjct: 96 EYVNYAFVEYIRSHDANVALQTLNGVQLENKTLKINWAFETQQAAENDDTFNLFVGDLNV 155
Query: 132 EVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPE 191
+VD++ L TF F +Q
Sbjct: 156 DVDDETLAGTFREFPTFIQA---------------------------------------H 176
Query: 192 IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
+M D TG S+G+ F+++++ E + ++DAM G+ L R I +++A K++
Sbjct: 177 VMWDMQTGRSRGYGFVSFSNQEEAQKAMDAMQGKDLSGRQIRINWATKRE 226
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
Query: 7 IQAGISTPCLQSLSQTKLEGGG----------ESGDGDAT--IYVGGLDDKVSETLMWEL 54
I++ + LQ+L+ +LE ++ + D T ++VG L+ V + +
Sbjct: 106 IRSHDANVALQTLNGVQLENKTLKINWAFETQQAAENDDTFNLFVGDLNVDVDDETLAGT 165
Query: 55 FVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSH 114
F + + H+ D T +GYGF+ F +E+A A+ M L G+ IR+N A+
Sbjct: 166 FREFPTFIQAHVMWDMQTGRSRGYGFVSFSNQEEAQKAMDAMQGKDLSGRQIRINWATKR 225
Query: 115 QKNL 118
++N+
Sbjct: 226 ERNM 229
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 123/260 (47%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++ F GPV+++ + +D VT+ GY ++ F+ DA +
Sbjct: 10 ASLYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNLADAQKVLD 69
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K+LY+ FSAFG IL +
Sbjct: 70 TMNFDMIQGKSIRLMWSQRDAYLRKSGIG-NVFIKNLDRSIDNKMLYEHFSAFGKILSSK 128
Query: 153 -------------------------------KIMNMIKLYGKPI--RVNKASSHQKNLDV 179
++ +L+ P R + + Q +
Sbjct: 129 VMSDDKGSRGYAFVHFQSQSAADRAIEEMNGALLKNCRLFVGPFKNRKEREAELQNKANE 188
Query: 180 GANIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E +++ +G SKGF F+++ + EA+ +++
Sbjct: 189 FTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAQRAVE 248
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ +C + + V A KK
Sbjct: 249 YMNGKDICGQMVFVGRAQKK 268
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 59/220 (26%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+Y+ D + + + E+F Q G +V+V + D ++ +G+GF+ F E A A++
Sbjct: 190 TNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGKS-KGFGFVSFDTHEAAQRAVE 248
Query: 95 IMNMIKLYGKPI---RVNKASSHQKNLD--------------VGANIFIGNLDPEVDEKL 137
MN + G+ + R K + Q L G ++I NLD +DE+
Sbjct: 249 YMNGKDICGQMVFVGRAQKKAERQAELKQMFEQLKRERFGRCRGVKLYIKNLDETIDEEQ 308
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L FS+FG + + K+M +
Sbjct: 309 LRRAFSSFGSMSRV-KVM----------------------------------------EE 327
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
G SKGF I ++ E + ++ M+GQ L ++ I+++ A
Sbjct: 328 EGRSKGFGLICFSCPEEATKAMAEMNGQVLGSKAINIALA 367
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 125/273 (45%), Gaps = 54/273 (19%)
Query: 25 EGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFM 84
E ++ + A++YVG LD V+E+ ++E F G V ++ + +D VT+ GYG++ F
Sbjct: 42 ESSTQASETLASLYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVNFH 101
Query: 85 GEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFS 143
+ + A++ +N ++ G R+ + G+ NIFI NLDP ++ K L+DTFS
Sbjct: 102 SQAAGERALEELNYAEIKGVRCRLMWSQRDPSLRRSGSGNIFIKNLDPAIENKTLHDTFS 161
Query: 144 AFGVILQTP---------------------------KIMNMIKLYGKPIRV-------NK 169
+FG +L + +N + L G+ I V ++
Sbjct: 162 SFGKVLSCKVATDENGNSKGFGFVHYESDEAAQAAIENINGMLLNGREIYVGPHLAKKDR 221
Query: 170 ASSHQKNLDVGANIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYA 210
S Q+ + N+F+ N D E D G++KGF F+N+A
Sbjct: 222 ESRFQEMIKNYTNVFVKNFDTESTEDELRELFESYGPITSIHLQVDSEGHNKGFGFVNFA 281
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ + +++A++ + +P+ V A KK+ +
Sbjct: 282 EHDDAVKAVEALNDKEYKGKPLYVGRAQKKNER 314
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 120/301 (39%), Gaps = 89/301 (29%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTH-QGYGFIEFMGEEDADYAI 93
++V D + +E + ELF GP+ ++H+ D ++ H +G+GF+ F +DA A+
Sbjct: 233 TNVFVKNFDTESTEDELRELFESYGPITSIHLQVD--SEGHNKGFGFVNFAEHDDAVKAV 290
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDV-------------------GANIFIGNLDPEVD 134
+ +N + GKP+ V +A +KN V N+FI NLD +D
Sbjct: 291 EALNDKEYKGKPLYVGRA--QKKNERVHELTKKYEADRLEKLQKYQSVNLFIKNLDESID 348
Query: 135 EKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMR 194
+ L + F FG I + K+M LD
Sbjct: 349 DARLEEEFKPFGTIT-SAKVM--------------------------------LD----- 370
Query: 195 DPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
+ G S+GF F+ ++ E + +I M+ + + N+P+ V+ A K R A+++
Sbjct: 371 --ENGKSRGFGFVCLSTPEEATKAISEMNQRMVANKPLYVALA---QPKAIRRSQLAQQI 425
Query: 255 LAAQ-----------------NPLSQADRPHQLFADAPPPAPLPPPPPPI-NIMGLPPPP 296
A P+ +P L PP A +PP I G+P P
Sbjct: 426 QARNQMRMQQQAGPGIPNQFVQPIFYGQQPGML----PPGARVPPMGNQIPQFAGMPRPG 481
Query: 297 P 297
P
Sbjct: 482 P 482
>gi|268566587|ref|XP_002639761.1| C. briggsae CBR-PAB-1 protein [Caenorhabditis briggsae]
Length = 651
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 11/189 (5%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E++++E F +GPV+++ + +D T+ GY ++ F DA+ A+
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQ--- 150
MN L+GKP+R+ + GA NIFI NLD +D K +YDTFS FG IL
Sbjct: 92 TMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKV 151
Query: 151 ------TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS-KG 203
+ K + + N L G +F+G P R+ + G + K
Sbjct: 152 AIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKK 211
Query: 204 FAFINYASF 212
F + +F
Sbjct: 212 FTNVYVKNF 220
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 48/181 (26%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V+E +L++ FSA G +L Q P
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEIMRDP---------------- 196
MN L+GKP+R+ + GA NIFI NLD I
Sbjct: 92 TMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKV 151
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
+ G+SKG+ F+++ + EA+ +I ++G L + + V + + G A++
Sbjct: 152 AIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKK 211
Query: 254 L 254
Sbjct: 212 F 212
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/251 (19%), Positives = 95/251 (37%), Gaps = 65/251 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQ--THQGYGFIEFMG 85
GE+ +YV + ++ + +LF + G + + D +T +G+GF+ F
Sbjct: 206 GETAKKFTNVYVKNFGEHYNKDTLEKLFAKYGTITSC----DVMTSEGKSKGFGFVAFAE 261
Query: 86 E---------------EDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDV----GANIFI 126
E +D + + K + + K K + G N+++
Sbjct: 262 PEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYV 321
Query: 127 GNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIG 186
NLD VD++ L F +FG I
Sbjct: 322 KNLDESVDDEALKKQFESFGNI-------------------------------------- 343
Query: 187 NLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
++M D + G SKGF F+ + E + ++ M+ + +C++P+ V+ A +K+ + +
Sbjct: 344 -TSAKVMTD-ENGRSKGFGFVCFEKPEEATTAVSEMNSKMVCSKPLYVALAQRKEDRRAQ 401
Query: 247 HGSAAERLLAA 257
S + LA+
Sbjct: 402 LASQYMQRLAS 412
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 124/263 (47%), Gaps = 58/263 (22%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YVG L V+E ++E F +GP+ ++ + +D +T+ GY ++ F DA+ A+ +
Sbjct: 21 LYVGDLAPDVNEAQLYEKFNSTGPISSIRVCRDAITRRSLGYAYVNFQQPNDAERALDTL 80
Query: 97 NMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP-- 152
N + GKP R+ ++ + VG NIFI NL+ ++D K +YDTFSAFG IL
Sbjct: 81 NFDPVNGKPCRIMWSQRDPSLRRSGVG-NIFIKNLEKDIDNKAIYDTFSAFGNILSCKIA 139
Query: 153 -------------------------KIMNMIKLYGKPIRVNKASSHQKNLD-VG------ 180
+ +N + L GK + V S ++ ++ +G
Sbjct: 140 LDENGNSKGYAFVHFETQEAANRAIEKVNGMLLSGKKVFVGHFMSRKERMEKIGNLAAKY 199
Query: 181 ANIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASID 220
N+++ N +I MRD D+G S+GF F++Y + EA+ +++
Sbjct: 200 TNLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRD-DSGKSRGFGFVSYETHEAAQKAVE 258
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
++ + R + V+ A KK +
Sbjct: 259 TLNEKEFDLRRMYVARAQKKSER 281
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 102/240 (42%), Gaps = 58/240 (24%)
Query: 21 QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGF 80
+ ++E G +YV D +S+ +LF Q G +V+ + +D ++ +G+GF
Sbjct: 186 KERMEKIGNLAAKYTNLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDDSGKS-RGFGF 244
Query: 81 IEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS------------HQKNLDV-----GAN 123
+ + E A A++ +N + + + V +A QK ++ G N
Sbjct: 245 VSYETHEAAQKAVETLNEKEFDLRRMYVARAQKKSERSALLRRQYEQKKQEMMKRFQGVN 304
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+++ NLD +D+ L F+ FG I + K+M+
Sbjct: 305 LYVKNLDDVIDDAKLRQEFANFGTIT-SAKVMS--------------------------- 336
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G S+GF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 337 ------------DEKGISRGFGFVCFSSPEEATKAVTEMNGRIIISKPLYVALAQRKEDR 384
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 104/219 (47%), Gaps = 41/219 (18%)
Query: 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDAD 90
G ++YVG L+ V+++ +++LF Q G VV+V + +D T+ GYG++ + DA
Sbjct: 34 GLTSTSLYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDAS 93
Query: 91 YAIKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
A++++N + GK IRV + G ANIFI NLD +D K L+DTFS+FG IL
Sbjct: 94 RAMEMLNFTPVNGKSIRVMYSHRDPTLRKSGSANIFIKNLDKSIDNKALHDTFSSFGNIL 153
Query: 150 QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINY 209
+I D + G SKG+ F+ Y
Sbjct: 154 SC---------------------------------------KIATDSN-GQSKGYGFVQY 173
Query: 210 ASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
+ E++ +ID ++G + ++ + V + +K + G
Sbjct: 174 DNEESAQGAIDKLNGMLMNDKQVYVGHFLRKQERESTTG 212
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 115/274 (41%), Gaps = 69/274 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV L + ++ + ++F + G + + + +D ++ + +GFI F EDA A++ +
Sbjct: 219 VYVKNLSESTTDDELKKVFGEFGNITSAVVMRDADGKS-KCFGFINFETAEDAAKAVESL 277
Query: 97 NMIKLYGKPIRVNKA---SSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N K K V KA S ++ L G N+++ NLD +D++ L
Sbjct: 278 NGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLK 337
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ FS FG I ++MRDP +G
Sbjct: 338 ELFSEFGTITSC---------------------------------------KVMRDP-SG 357
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
S+G F+ +++ E + ++ M+G+ + ++P+ V+ A +K+ + + + +L
Sbjct: 358 ISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLQAQFSQLRPVAM 417
Query: 260 PLSQADR-----------PHQLFADAPPPAPLPP 282
P S A R QLF PPA +PP
Sbjct: 418 PPSLAPRMPIYPPGAPGIGQQLFYGQGPPAMIPP 451
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 42/211 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 62 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKALE 121
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 122 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC-- 179
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ +D ++GNSKG+ F++Y + E
Sbjct: 180 -------------------------------------KVAQD-ESGNSKGYGFVHYETDE 201
Query: 214 ASDASIDAMHGQYLCNRPISVSYAF-KKDSK 243
A+ +I ++G L + + V + KKD +
Sbjct: 202 AASQAIKHVNGMLLNEKKVFVGHHIPKKDRQ 232
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 67/136 (49%), Gaps = 19/136 (13%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV + ++ ELF + G V + + +D + ++G+GF+ F+ E A A+ +
Sbjct: 245 IYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGK-NRGFGFVNFINHEHASAAVDEL 303
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N G+ + V +A H++ ++ G N+++ NL+ +VD++ L
Sbjct: 304 NGKDFMGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLEDDVDDEKLR 363
Query: 140 DTFSAFGVILQTPKIM 155
+ F+ +G I + K+M
Sbjct: 364 ELFAPYGAIT-SAKVM 378
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 101/218 (46%), Gaps = 45/218 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG LD V + ++++F Q G VV+V + +D T+ GY ++ F DA A++
Sbjct: 39 TSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALE 98
Query: 95 IMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
++N + GKPIR+ N+ S +K+ ANIFI NLD +D K LYDTFS FG IL
Sbjct: 99 MLNFTPINGKPIRIMYSNRDPSSRKS--GAANIFIKNLDKSIDNKALYDTFSVFGNILSC 156
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
M +G SKG+ F+ +
Sbjct: 157 KVATEM----------------------------------------SGESKGYGFVQFEL 176
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
EA+ +I ++G L ++ + V +K + + G+
Sbjct: 177 EEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGN 214
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 128/333 (38%), Gaps = 83/333 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + +++ F G +++ + + ++ +GYGF++F EE A A
Sbjct: 125 GAANIFIKNLDKSIDNKALYDTFSVFGNILSCKVATE-MSGESKGYGFVQFELEEAAQNA 183
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA-----NIFIGNLDPEVDEKLLYDTFSAFGV 147
I +N + L K + V Q+ +V N+++ NL E L + F FG
Sbjct: 184 ISKLNGMLLNDKKVYVGPFVRKQERENVSGNPKFNNVYVKNLSESTTEDNLKEIFGKFGP 243
Query: 148 ILQT---------PKIMNMIK-------------LYGKPI--------RVNKASSHQKNL 177
I + + L GK R K S + L
Sbjct: 244 ITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYVCRAQKKSEREMEL 303
Query: 178 --------------DVGANIFIGNLDPEI---------------------MRDPDTGNSK 202
+ G N+++ NLD I MRD + G SK
Sbjct: 304 KEKFEKNIKEAADKNQGTNLYLKNLDDSIDDDEKLKEIFADFGTITSCKVMRDLN-GVSK 362
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLS 262
G F+ + S E + ++ AM+G+ + ++P+ V+ A +K+ + R + ++ P S
Sbjct: 363 GSGFVAFKSAEDASRALVAMNGKMIGSKPLYVALAQRKEERRARLQAQFSQMRPMVMPPS 422
Query: 263 QADR-----------PHQLFADAPPPAPLPPPP 284
A R QLF PPPA + P P
Sbjct: 423 VAPRMPMYPPGVPGVGQQLFYGQPPPAFVNPQP 455
>gi|392575524|gb|EIW68657.1| hypothetical protein TREMEDRAFT_71869 [Tremella mesenterica DSM
1558]
Length = 389
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 106/210 (50%), Gaps = 47/210 (22%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG--YGFIEFMGEEDADYAIK 94
+YVG L +V++ ++ E+F +GPVVN + +DR Q H G YGF+E++ A+ AI+
Sbjct: 26 LYVGNLSPRVTDYMLTEIFAVAGPVVNAKIIQDRNFQ-HAGFNYGFVEYIDMRSAEQAIQ 84
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI 154
+N K++ ++ NK + + ++F+G+L PEV++ +L F AFG + +
Sbjct: 85 TLNGRKIFDAEVKQNKEDTQHHH-----HVFVGDLSPEVNDDVLAKAFGAFGSMSEA--- 136
Query: 155 MNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEA 214
+M D ++G S+G+ F+++ E
Sbjct: 137 ------------------------------------RVMWDMNSGKSRGYGFLSFRKRED 160
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
++ +I+ M+G++L +R I V++A +K G
Sbjct: 161 AEQAINTMNGEWLGSRAIRVNWANQKTQTG 190
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 94/228 (41%), Gaps = 21/228 (9%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++VG L +V++ ++ + F G + + D + +GYGF+ F EDA+ AI M
Sbjct: 109 VFVGDLSPEVNDDVLAKAFGAFGSMSEARVMWDMNSGKSRGYGFLSFRKREDAEQAINTM 168
Query: 97 NMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDE--KLLYDTFSAFGVILQTPKI 154
N L + IRVN A+ + GA P +L A + P I
Sbjct: 169 NGEWLGSRAIRVNWANQKTQTGSSGAYSSPSYTAPSYGHYPQLTSSPTPAAPIAPLAPVI 228
Query: 155 MNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMR--------------DPDTGN 200
+ G P A+S + +F+GNL P + + D
Sbjct: 229 PGVPPAGGVP-----AASATPVIPDNCTLFVGNLGPYVTQAELTPLFQTYGYVTDIRMQA 283
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
+G+AF+ + +A+ +++ + + RP+ + + +K ++ + G
Sbjct: 284 DRGYAFVKLDTSQAAVSAMATLQNTMVQGRPLKIQWGREKPAEAAQAG 331
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 45/217 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG LD V + ++++F Q G VV+V + +D T+ GY ++ + DA A++
Sbjct: 40 TSLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARALE 99
Query: 95 IMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
++N + GKPIR+ N+ S +K+ ANIFI NLD +D K LYDTF FG IL
Sbjct: 100 MLNFTPINGKPIRIMYSNRDPSLRKSGT--ANIFIKNLDKSIDNKALYDTFCVFGNILSC 157
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
++ D +G SKG+ F+ Y
Sbjct: 158 ---------------------------------------KVATDA-SGESKGYGFVQYER 177
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
EA+ A+ID ++G + ++ + V +K + + G
Sbjct: 178 DEAAQAAIDKLNGMLMNDKKVYVGPFIRKQERDNSPG 214
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 80/377 (21%), Positives = 137/377 (36%), Gaps = 109/377 (28%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + +++ F G +++ + D + +GYGF+++ +E A A
Sbjct: 126 GTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATD-ASGESKGYGFVQYERDEAAQAA 184
Query: 93 IK-----IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
I +MN K+Y P + + N+++ NL E L + F FG
Sbjct: 185 IDKLNGMLMNDKKVYVGPFIRKQERDNSPGQVKFNNVYVKNLSENTTEDDLKEIFGKFGT 244
Query: 148 IL---------------------------QTPKIMNMIKLYGKPIRVNKASSH------- 173
I Q + +N K K V +A
Sbjct: 245 ITSAVVMREGDGRSKCFGFVNFESPDDAAQAVQELNGKKFDDKEWYVGRAQKKSEREMEL 304
Query: 174 ----QKNLDVGA------NIFIGNLDP--------------------EIMRDPDTGNSKG 203
+KNL A N+++ NLD ++MRD + G S+G
Sbjct: 305 KEKFEKNLQEAADKYQNTNLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSN-GVSRG 363
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F+ + S E + ++ M+ + + ++P+ V+ A +K+ + R + +L PL+
Sbjct: 364 SGFVAFKSAEDASRALAEMNSKMVGSKPLYVALAQRKEDRKARLQAQFSQLRPV--PLAP 421
Query: 264 ADRP-------------HQLFADAPPPA-----------------------PLPPPPPPI 287
+ P QLF PPPA P+P P+
Sbjct: 422 SVGPRMPMFPPGVPGVGQQLFYGQPPPAFINTQPGFGFQQPLMPGMRPGAGPMPNFIMPM 481
Query: 288 NIMGLPPPPPSGLRASA 304
G P P+G RA A
Sbjct: 482 VQQGQQPQRPAGRRAGA 498
>gi|194378720|dbj|BAG63525.1| unnamed protein product [Homo sapiens]
Length = 260
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/52 (84%), Positives = 48/52 (92%)
Query: 222 MHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
M+GQYLCN PI+VSYAF+KDSKG+RHG AA RLLAAQNPLSQ DRPHQLFAD
Sbjct: 1 MNGQYLCNHPITVSYAFEKDSKGERHGLAAGRLLAAQNPLSQPDRPHQLFAD 52
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 109/210 (51%), Gaps = 46/210 (21%)
Query: 30 SGDGD---ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
SG G+ A++YVG LD V+E++++E F Q+GPV+++ + +D +++ GY ++ F
Sbjct: 3 SGGGNYTMASLYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYVNFHQP 62
Query: 87 EDADYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSA 144
DA+ A+ MN L +P+R+ ++ + VG N+FI NL ++D K ++DTFSA
Sbjct: 63 GDAERALDTMNFEPLKNRPMRIMWSQRDPSLRKSGVG-NVFIKNLHKDIDNKAIFDTFSA 121
Query: 145 FGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGF 204
FG IL RV A+ Q GNS+G+
Sbjct: 122 FGNIL--------------SCRV--ATDEQ------------------------GNSRGY 141
Query: 205 AFINYASFEASDASIDAMHGQYLCNRPISV 234
F+++ + EA++ +I+ ++G L + + V
Sbjct: 142 GFVHFETEEAANEAINKVNGMLLNEKKVFV 171
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 122/323 (37%), Gaps = 74/323 (22%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ L + +++ F G +++ + D + +GYGF+ F EE A+ A
Sbjct: 97 GVGNVFIKNLHKDIDNKAIFDTFSAFGNILSCRVATDEQGNS-RGYGFVHFETEEAANEA 155
Query: 93 IKIMNMIKLYGKPIRVNK---ASSHQKNLDVGA----NIFIGNLDPEVDEKLLYDTFSAF 145
I +N + L K + V K S ++ + A N+++ N E+D+ L + F +
Sbjct: 156 INKVNGMLLNEKKVFVGKFVPRSERERMMGDKARLFTNVYVKNFGEELDDGKLKEMFEVY 215
Query: 146 GVIL---------------------------QTPKIMNMIKL-YGKPIRVNKASSHQKNL 177
G I Q K +N +L GK I V +A + L
Sbjct: 216 GKITSARVMTDQTGKSRGFGFVSFENPDNAEQAVKELNDKELGNGKKIYVGRAQKKAERL 275
Query: 178 D-----------------VGANIFIGNLD--------------------PEIMRDPDTGN 200
G N+++ NLD ++M D
Sbjct: 276 SDLKRKFEQLKMERMTRYQGVNLYVKNLDDVIDDERLRREFAPYGTITSAKVMMDSTGAR 335
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK-DSKGDRHGSAAERLLAAQN 259
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K D + +R +
Sbjct: 336 SKGFGFVCFSSPEEATKAVTEMNGRIIVQKPLYVALAQRKEDRRAHLSSQFVQRFTGVRV 395
Query: 260 PLSQADRPHQLFADAPPPAPLPP 282
P Q H PA + P
Sbjct: 396 PFGQMPFNHSTPTSFIVPASMHP 418
>gi|495594|gb|AAA70421.1| poly(A)-binding protein [Drosophila melanogaster]
Length = 632
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 43/202 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E+ +++ F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + KPIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVG-NVFIKNLDRAIDNKAIYDTFSAFGNILSC- 119
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
K ++ +K GNSKG+ F+++ +
Sbjct: 120 ----------------KVATDEK-----------------------GNSKGYGFVHFETE 140
Query: 213 EASDASIDAMHGQYLCNRPISV 234
EA++ SID ++G L + + V
Sbjct: 141 EAANTSIDKVNGMLLNGKKVYV 162
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/283 (20%), Positives = 116/283 (40%), Gaps = 76/283 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D + +GYGF+ F EE A+ +
Sbjct: 88 GVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNS-KGYGFVHFETEEAANTS 146
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG------ANIFIGNLDPEVDEKLLYDTFSAFG 146
I +N + L GK + V K +K ++G N+++ N + D++ L + F +G
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIP-RKEQELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYG 205
Query: 147 VILQTPKIMN-----------------------MIKLYGKPI---------RVNKASSHQ 174
I + K+M+ + L GK + R K + Q
Sbjct: 206 KIT-SYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQ 264
Query: 175 KNLD--------------VGANIFIGNLD--------------------PEIMRDPDTGN 200
+ L G N+++ NLD ++M D + G
Sbjct: 265 QELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GR 323
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ + + ++ ++G+ + ++P+ V+ A +K+ +
Sbjct: 324 SKGFGFVCFNPESEATCAVTELNGRVVGSKPLYVALAQRKEER 366
>gi|393218535|gb|EJD04023.1| hypothetical protein FOMMEDRAFT_133373 [Fomitiporia mediterranea
MF3/22]
Length = 422
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 107/211 (50%), Gaps = 45/211 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG--YGFIEFMGEEDADYA 92
A +YVG L +V+E ++ E+F +GPV +V + DR Q H G YGF+E+M A+ A
Sbjct: 13 AHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQ-HGGLNYGFVEYMDMRAAETA 71
Query: 93 IKIMNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
++ +N K++ IRVN A S+ +++ ++F+G+L PEV++ +L FSAFG +
Sbjct: 72 LQTLNGRKIFDTEIRVNWAYQGSTAKEDTSGHFHVFVGDLSPEVNDAVLAKAFSAFGTL- 130
Query: 150 QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINY 209
D +M D ++G S+G+ F+ +
Sbjct: 131 --------------------------------------SDARVMWDMNSGKSRGYGFLAF 152
Query: 210 ASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
++ +I M+G++L +R I V++A +K
Sbjct: 153 RDKTDAEQAIATMNGEWLGSRAIRVNWANQK 183
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 23/228 (10%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E G ++VG L +V++ ++ + F G + + + D + +GYGF+ F + D
Sbjct: 98 EDTSGHFHVFVGDLSPEVNDAVLAKAFSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTD 157
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEK---LLYDTFSAF 145
A+ AI MN L + IRVN A+ + G ++ + L Y+T
Sbjct: 158 AEQAIATMNGEWLGSRAIRVNWANQKTQGAPAPRPTGAGGAPAPINFQGGPLSYET---- 213
Query: 146 GVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIF--IGNLDPEIMRDPDTGNSKG 203
V+ QTP Y + V + D+ +F IG L EI D +G
Sbjct: 214 -VVQQTPA-------YNTTVYVGNLVPYCTQADL-IPLFQSIGYLS-EIRMQAD----RG 259
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA 251
FAF+ + E + +I + GQ + RPI S+ + G +AA
Sbjct: 260 FAFVKLDTHENAAMAIVQLQGQMVHGRPIKCSWGKDRADGGTVQPAAA 307
>gi|195487595|ref|XP_002091975.1| GE11925 [Drosophila yakuba]
gi|194178076|gb|EDW91687.1| GE11925 [Drosophila yakuba]
Length = 634
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 43/202 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E+ +++ F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + KPIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVG-NVFIKNLDKAIDNKAIYDTFSAFGNILSC- 119
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
K ++ +K GNSKG+ F+++ +
Sbjct: 120 ----------------KVATDEK-----------------------GNSKGYGFVHFETE 140
Query: 213 EASDASIDAMHGQYLCNRPISV 234
EA++ SID ++G L + + V
Sbjct: 141 EAANTSIDKVNGMLLNGKKVYV 162
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/284 (20%), Positives = 116/284 (40%), Gaps = 76/284 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D + +GYGF+ F EE A+ +
Sbjct: 88 GVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGNS-KGYGFVHFETEEAANTS 146
Query: 93 IKIMNMIKLYGKPIRVNK---ASSHQKNLDVGA----NIFIGNLDPEVDEKLLYDTFSAF 145
I +N + L GK + V K +K L A N+++ N + D++ L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 146 GVILQTPKIMN-----------------------MIKLYGKPI---------RVNKASSH 173
G I + K+M+ + L GK + R K +
Sbjct: 207 GKIT-SYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAER 265
Query: 174 QKNLD--------------VGANIFIGNLD--------------------PEIMRDPDTG 199
Q+ L G N+++ NLD ++M D + G
Sbjct: 266 QQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRVAFSPYGNITSAKVMTDEE-G 324
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ + + + ++ ++G+ + ++P+ V+ A +K+ +
Sbjct: 325 RSKGFGFVCFNAPSEATCAVTELNGRVVGSKPLYVALAQRKEER 368
>gi|402585898|gb|EJW79837.1| Poly(A) binding protein [Wuchereria bancrofti]
Length = 175
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 18 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 77
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
MN +YGKPIR+ + GA NIFI NLD +D K +YDTFS FG IL K
Sbjct: 78 TMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSC-K 136
Query: 154 IMN 156
+ N
Sbjct: 137 VAN 139
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 118/263 (44%), Gaps = 58/263 (22%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ D + A++ +
Sbjct: 50 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 109
Query: 97 NMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP--- 152
N + G+ R+ + G NIFI NLD +D K L+DTF+AFG +L
Sbjct: 110 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFAAFGNVLSCKVAT 169
Query: 153 -----------------------------KIMNMIKLYGKPIRVNKASSHQKNLDVGA-- 181
++N K+Y P +++ K ++ A
Sbjct: 170 DEHGRSKGYGFVHYETAEAADTAIKAVNGMLLNDKKVYVGP-HISRKERQSKIEEMKAQF 228
Query: 182 -NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASID 220
N+++ N+D E I RD + G SKGF F+N+ E + ++
Sbjct: 229 TNVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRD-EEGRSKGFGFVNFEKHEEAQKGVE 287
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
++H L + + V+ A KK +
Sbjct: 288 SLHDFELNGKKLFVTRAQKKAER 310
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 99/225 (44%), Gaps = 58/225 (25%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+YV +D +V++ +LF Q G V + + +D ++ +G+GF+ F E+A ++
Sbjct: 230 NVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRDEEGRS-KGFGFVNFEKHEEAQKGVES 288
Query: 96 MNMIKLYGKPIRVNKAS-------------SHQKNLDV----GANIFIGNLDPEVDEKLL 138
++ +L GK + V +A KN + G N++I NL+ EVD++ L
Sbjct: 289 LHDFELNGKKLFVTRAQKKAEREEELRKSYEQAKNEKLSKYQGVNLYIKNLEDEVDDERL 348
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
F FG I ++MRD +
Sbjct: 349 RQEFEPFGTITSA---------------------------------------KVMRD-EK 368
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S + + ++ M+ + + +P+ VS A +++ +
Sbjct: 369 GSSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVR 413
>gi|392597176|gb|EIW86498.1| hypothetical protein CONPUDRAFT_78829 [Coniophora puteana
RWD-64-598 SS2]
Length = 439
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 110/220 (50%), Gaps = 45/220 (20%)
Query: 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG--YGFIEF 83
GG A +YVG L +V+E ++ E+F +GPV +V + DR Q H G YGF+E+
Sbjct: 8 GGPAEAPRRAHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQ-HGGLNYGFVEY 66
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA---NIFIGNLDPEVDEKLLYD 140
+ A+ A++ +N K++ IRVN A Q+N + + ++F+G+L PEV++++L
Sbjct: 67 LDMRAAETALQTLNGRKIFDTEIRVNWAYQGQQNKEDTSGHFHVFVGDLSPEVNDEVLAK 126
Query: 141 TFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200
F+AFG + D +M D ++G
Sbjct: 127 AFAAFGTM---------------------------------------SDARVMWDMNSGK 147
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
S+G+ F+ + ++ +I M+G++L +R I V++A +K
Sbjct: 148 SRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIRVNWANQK 187
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 43/202 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E+ +++ F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + KPIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVG-NVFIKNLDRAIDNKAIYDTFSAFGNILSC- 119
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
K ++ +K GNSKG+ F+++ +
Sbjct: 120 ----------------KVATDEK-----------------------GNSKGYGFVHFETE 140
Query: 213 EASDASIDAMHGQYLCNRPISV 234
EA++ SID ++G L + + V
Sbjct: 141 EAANTSIDKVNGMLLNGKKVYV 162
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/284 (20%), Positives = 116/284 (40%), Gaps = 76/284 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D + +GYGF+ F EE A+ +
Sbjct: 88 GVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNS-KGYGFVHFETEEAANTS 146
Query: 93 IKIMNMIKLYGKPIRVNK---ASSHQKNLDVGA----NIFIGNLDPEVDEKLLYDTFSAF 145
I +N + L GK + V K +K L A N+++ N + D++ L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 146 GVILQTPKIMN-----------------------MIKLYGKPI---------RVNKASSH 173
G I + K+M+ + L GK + R K +
Sbjct: 207 GKIT-SYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAER 265
Query: 174 QKNLD--------------VGANIFIGNLD--------------------PEIMRDPDTG 199
Q+ L G N+++ NLD ++M D + G
Sbjct: 266 QQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-G 324
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ + + + ++ ++G+ + ++P+ V+ A +K+ +
Sbjct: 325 RSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEER 368
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 44/219 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E ++++ F +G ++++ + +D +T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG NIFI N+D +D K LYDTFSAFG IL
Sbjct: 71 TMNYEVIKGRPIRIMWSQRDPGLRKSGVG-NIFIKNMDESIDNKALYDTFSAFGNILSCK 129
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
+ D SKG+ F+++ +
Sbjct: 130 VVC-----------------------------------------DENGSKGYGFVHFETQ 148
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA 251
EA++ +I+ M+G L +R + V + + + G+ A
Sbjct: 149 EAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKA 187
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 65/227 (28%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + +F + G ++V + D ++ +G+GF+ F+ DA A+ M
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRS-RGFGFVNFVNHGDARRAVTEM 251
Query: 97 NMIKLYGKPIRVNKASSHQKNLDV--------------------GANIFIGNLDPEVDEK 136
N +L G+ + V +A QK L+ G N+++ NLD +D++
Sbjct: 252 NGKELNGRVLYVGRA---QKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDE 308
Query: 137 LLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196
L F+ +G I + K+M
Sbjct: 309 KLRKEFAPYGTIT-SAKVMT---------------------------------------- 327
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
D G+S+GF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 328 DGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 117/262 (44%), Gaps = 54/262 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG L+ V+ET +++LF Q G +V++ + +D ++ GYG++ + DA A++
Sbjct: 29 TSLYVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQALE 88
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
++N + GKPIR+ + GA NI+I NLD +D K L+DTFSAFG IL
Sbjct: 89 VLNFTPVNGKPIRIMYSYRDPTIRKSGAGNIYIKNLDKAIDNKALHDTFSAFGNILSCKV 148
Query: 153 -------------------------------KIMNMIKLYGKPIRVNKASSHQKNLDVGA 181
++N ++Y P + +
Sbjct: 149 ATDSAGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGPFLRRQERESGTDKTKFN 208
Query: 182 NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASIDA 221
N+++ NL +MRD D G S+ F F+N+ + + + S++A
Sbjct: 209 NVYVKNLSETTTEEDLKKIFGEYGAITSAVVMRDGD-GKSRCFGFVNFENPDDAARSVEA 267
Query: 222 MHGQYLCNRPISVSYAFKKDSK 243
++G+ + V A KK +
Sbjct: 268 LNGKTFDEKEWYVGKAQKKSER 289
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 127/331 (38%), Gaps = 81/331 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G IY+ LD + + + F G +++ + D Q+ GYGF++F EE A A
Sbjct: 115 GAGNIYIKNLDKAIDNKALHDTFSAFGNILSCKVATDSAGQSL-GYGFVQFDNEESAKNA 173
Query: 93 IKIMNMIKLYGKPIRVN---KASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGV 147
I +N + L K + V + + D N+++ NL E+ L F +G
Sbjct: 174 IDKLNGMLLNDKQVYVGPFLRRQERESGTDKTKFNNVYVKNLSETTTEEDLKKIFGEYGA 233
Query: 148 IL---------------------------QTPKIMNMIKLYGKPIRVNKASSH-QKNLDV 179
I ++ + +N K V KA ++ +++
Sbjct: 234 ITSAVVMRDGDGKSRCFGFVNFENPDDAARSVEALNGKTFDEKEWYVGKAQKKSEREVEL 293
Query: 180 ----------------GANIFIGNLDPEI--------------------MRDPDTGNSKG 203
G N+++ NLD I MRDP+ G SKG
Sbjct: 294 KGQFEQTLKETVDKFEGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPN-GVSKG 352
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F+ Y++ E + ++ M+G+ + ++P+ V+ A +K+ + R + ++ A P
Sbjct: 353 SGFVAYSTAEEASKALTEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPAMAPAVG 412
Query: 264 ADRP----------HQLFADAPPPAPLPPPP 284
P QLF PPA +PP P
Sbjct: 413 PRMPMYPHGTPGIGQQLFYGQGPPAIVPPQP 443
>gi|393248198|gb|EJD55705.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 426
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 45/211 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG--YGFIEFMGEEDADYA 92
A +YVG L +V+E ++ E+F +GPV +V + DR Q H G YGF+E+M A+ A
Sbjct: 6 AHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQ-HGGLNYGFVEYMDMRAAETA 64
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGAN---IFIGNLDPEVDEKLLYDTFSAFGVIL 149
++ +N K++ IRVN A +N + +N +F+G+L PEV +++L FSAFG +
Sbjct: 65 LQTLNGRKIFDTEIRVNWAYQGSQNKEDTSNHFHVFVGDLSPEVSDEVLGKAFSAFGTL- 123
Query: 150 QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINY 209
D +M D ++G S+G+ F+ +
Sbjct: 124 --------------------------------------SDARVMWDMNSGKSRGYGFLAF 145
Query: 210 ASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
++ +I M+G++L +R I V++A +K
Sbjct: 146 RDKTDAEQAIATMNGEWLGSRAIRVNWANQK 176
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 104/215 (48%), Gaps = 41/215 (19%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG L+ V+E +++LF Q VV+V + +D+ ++ GYG++ F +DA A+K
Sbjct: 46 SLYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAANAMKA 105
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI 154
+N L GKPIR+ + G N+FI NLD +D KLL++TF+AFG +L
Sbjct: 106 LNFTPLNGKPIRIMFSHRDPSIRKSGYGNVFIKNLDSTLDNKLLHETFAAFGTVLSC--- 162
Query: 155 MNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEA 214
+ V +N G SKG+ F+ + + E+
Sbjct: 163 ---------------------KVAVDSN----------------GQSKGYGFVQFENEES 185
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
++ +I + G L ++ + V + ++ + +GS
Sbjct: 186 AERAISFLDGMCLNDKQVYVGFFVRQQERTRTNGS 220
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 79/197 (40%), Gaps = 46/197 (23%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + L+ E F G V++ + D Q+ +GYGF++F EE A+ A
Sbjct: 131 GYGNVFIKNLDSTLDNKLLHETFAAFGTVLSCKVAVDSNGQS-KGYGFVQFENEESAERA 189
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG-----ANIFIGNLDPEVDEKLLYDTFSAFGV 147
I ++ + L K + V Q+ N+++ NL + + L F +G
Sbjct: 190 ISFLDGMCLNDKQVYVGFFVRQQERTRTNGSPKFTNVYVKNLSETITNEDLEKVFGVYGT 249
Query: 148 ILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFI 207
I +M+D TG S+GF F+
Sbjct: 250 ITSAL---------------------------------------VMKD-QTGKSRGFGFV 269
Query: 208 NYASFEASDASIDAMHG 224
N+ +++ A+++ ++G
Sbjct: 270 NFQDPDSAAAAVEKLNG 286
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 59/228 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV L + ++ + ++F G + + + KD+ T +G+GF+ F + A A++ +
Sbjct: 226 VYVKNLSETITNEDLEKVFGVYGTITSALVMKDQ-TGKSRGFGFVNFQDPDSAAAAVEKL 284
Query: 97 NMIKLYGKPI----RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLL 138
N + R + S + L AN+++ NLD +++ L
Sbjct: 285 NGTTAHDDKAWYVGRAQRKSEREAELKAKFEQERNSRYERLKAANLYLKNLDDNINDVKL 344
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
+ FS FG I +++ HQ
Sbjct: 345 KELFSEFGSITSCKVMLD----------------HQ------------------------ 364
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
G SKG F+ +++ E + ++ M+G+ + +P+ V+ A +K+ + R
Sbjct: 365 GVSKGSGFVAFSTPEEASRALKEMNGKMIGRKPLYVAIAQRKEERKAR 412
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A +Y+ LDD +++ + ELF + G + + + D +G GF+ F E+A A+K
Sbjct: 328 ANLYLKNLDDNINDVKLKELFSEFGSITSCKVMLDH-QGVSKGSGFVAFSTPEEASRALK 386
Query: 95 IMNMIKLYGKPIRVNKASSHQK 116
MN + KP+ V A ++
Sbjct: 387 EMNGKMIGRKPLYVAIAQRKEE 408
>gi|237833723|ref|XP_002366159.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
gi|211963823|gb|EEA99018.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
Length = 768
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 45/202 (22%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG L V+E +++E+F GPV ++ + +D VT+ GY ++ + G +DA+ ++
Sbjct: 84 SLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDT 143
Query: 96 MNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+N + G+P R+ ++ S +K+ + NIF+ NLD +D K LYDTFS FG IL
Sbjct: 144 LNYTVIKGQPCRIMWCHRDPSLRKSGN--GNIFVKNLDKNIDNKALYDTFSLFGNILSCK 201
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ D G+SKG+ F++Y +
Sbjct: 202 VAVD----------------------------------------DNGHSKGYGFVHYENE 221
Query: 213 EASDASIDAMHGQYLCNRPISV 234
E++ ++ID ++G + + + V
Sbjct: 222 ESARSAIDKVNGMLIGGKTVYV 243
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 87/202 (43%), Gaps = 48/202 (23%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G+ I+V LD + +++ F G +++ + D + +GYGF+ + EE A A
Sbjct: 169 GNGNIFVKNLDKNIDNKALYDTFSLFGNILSCKVAVDDNGHS-KGYGFVHYENEESARSA 227
Query: 93 IKIMNMIKLYGKPIRVNK--ASSHQKNLDVG--ANIFIGNL-DPEVDEKLLYDTFSAFGV 147
I +N + + GK + V + + NL N++I N+ DE L +TFS FG
Sbjct: 228 IDKVNGMLIGGKTVYVGPFIRRAERDNLAEAKYTNVYIKNMPSAWEDESRLRETFSKFG- 286
Query: 148 ILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFI 207
I +++ + +DP + FAF
Sbjct: 287 -----SITSLV---------------------------------VRKDP---KGRLFAFC 305
Query: 208 NYASFEASDASIDAMHGQYLCN 229
N+A +++ A+++A++G+ + +
Sbjct: 306 NFADHDSAKAAVEALNGKRVTD 327
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ +DD + + + +LF G + + + +D + +GF+ FM E+A A+ M
Sbjct: 390 LYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDE-RGVSRCFGFVCFMSPEEATKAVTEM 448
Query: 97 NMIKLYGKPIRVNKASSHQKNL 118
++ + GKP+ V A ++ L
Sbjct: 449 HLKLVKGKPLYVGLAERREQRL 470
>gi|6102944|emb|CAB59276.1| hypothetical protein [Homo sapiens]
Length = 367
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 118/261 (45%), Gaps = 56/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A +YVG LD V+E ++++ F +GP+ + +D VT++ GYG++ F DA++A+
Sbjct: 3 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 62
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
MN + GKP R+ + + G NIFI NLD +D + L+ FSAFG IL
Sbjct: 63 TMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 122
Query: 154 I--------------------------MNMIKLYGKPIRVNK--------ASSHQKNLDV 179
+ MN ++L + + V + A ++
Sbjct: 123 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 182
Query: 180 GANIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASI 219
N+F+ N+ +I +RD +G SKGF F+ Y + EA+ ++
Sbjct: 183 FTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAV 241
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+HG+ + + + V A KK
Sbjct: 242 LDLHGKSIDGKVLYVGRAQKK 262
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 90/218 (41%), Gaps = 59/218 (27%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++V + D + + + ELF + GP +V + +D + +G+GF+ + E A A+
Sbjct: 184 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVL 242
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDV-----------------GANIFIGNLDPEVDEKL 137
++ + GK + V +A + L G I+I NLD ++++
Sbjct: 243 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 302
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + FS+FG I + +M +
Sbjct: 303 LKEEFSSFGSISRAKVMM-----------------------------------------E 321
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235
G KGF + ++SFE + ++D M+G+ + ++P+ V+
Sbjct: 322 VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 359
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 44/219 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E ++++ F +G ++++ + +D +T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG NIFI N+D +D K LYDTFSAFG IL
Sbjct: 71 TMNYEVIKGRPIRIMWSQRDPGLRKSGVG-NIFIKNMDESIDNKALYDTFSAFGNILSCK 129
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
+ D SKG+ F+++ +
Sbjct: 130 VVC-----------------------------------------DENGSKGYGFVHFETQ 148
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA 251
EA++ +I+ M+G L +R + V + + + G+ A
Sbjct: 149 EAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKA 187
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 65/227 (28%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + +F + G ++V + D ++ +G+GF+ F+ DA A+ M
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRS-RGFGFVNFVNHGDARRAVTEM 251
Query: 97 NMIKLYGKPIRVNKASSHQKNLDV--------------------GANIFIGNLDPEVDEK 136
N +L G+ + V +A QK L+ G N+++ NLD +D++
Sbjct: 252 NGKELNGRVLYVGRA---QKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDE 308
Query: 137 LLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196
L F+ +G I + K+M
Sbjct: 309 KLRKEFAPYGTIT-SAKVMT---------------------------------------- 327
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
D G+S+GF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 328 DGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 109/228 (47%), Gaps = 49/228 (21%)
Query: 12 STPCLQSLSQTKLEGGGESGDGDAT---IYVGGLDDKVSETLMWELFVQSGPVVNVHMPK 68
+TP + S+++ ++GD D T +YVG LD VSE L+++LF G V ++ + +
Sbjct: 26 ATPASTASSESQ-----QAGDNDVTSTSLYVGELDPSVSEALLYDLFSPIGSVASIRVCR 80
Query: 69 DRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIG 127
D +T+T GY ++ F E AI+ +N + GK R+ + G NIFI
Sbjct: 81 DAITKTSLGYAYVNFSDHEAGKQAIEKLNYTPIKGKLCRIMWSQRDPSLRKKGHGNIFIK 140
Query: 128 NLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGN 187
NL+ ++D K L+DTFS FG IL +
Sbjct: 141 NLNQDIDNKALFDTFSVFGNILSS------------------------------------ 164
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235
+I D +TG SKGF F+++ A++ +IDA++G L + I V+
Sbjct: 165 ---KIATD-ETGKSKGFGFVHFEEESAANEAIDALNGMLLNGQEIYVA 208
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/288 (19%), Positives = 109/288 (37%), Gaps = 85/288 (29%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ L+ + +++ F G +++ + D T +G+GF+ F E A+ A
Sbjct: 133 GHGNIFIKNLNQDIDNKALFDTFSVFGNILSSKIATDE-TGKSKGFGFVHFEEESAANEA 191
Query: 93 IKIMNMIKLYGKPI-------RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
I +N + L G+ I R + S ++ N+++ N+D E ++ + F
Sbjct: 192 IDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHFTNVYVKNIDLETTDEEFKEFFGKI 251
Query: 146 GVIL--------------------------------------------------QTPKIM 155
G + + +I
Sbjct: 252 GTVTSVALERGPDGKLKGFGFVNYEDHNDAVKAVEELNGAEFKDQELFVGRAQKKYERIQ 311
Query: 156 NMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI--------------------MRD 195
++ K Y + R+ K + +Q G N+F+ NLD I MR
Sbjct: 312 SLKKQY-ESTRLEKMAKYQ-----GVNLFVKNLDDSIDDEKLQEEFAPFGNITSVKVMR- 364
Query: 196 PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ ++S E + +I + Q + +P+ V+ A +KD +
Sbjct: 365 TENGKSKGFGFVCFSSPEEATKAITEKNQQIVAGKPLYVAIAQRKDVR 412
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 112/221 (50%), Gaps = 45/221 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L + +E L++ F +GPV+++ + +D T+ GY ++ F+ DA A+
Sbjct: 10 ASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLADAQRALD 69
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + + +G N+F+ NLD VD K LY+ FS FG IL +
Sbjct: 70 TMNFDVIKGRPIRLMWSQRDACLRRSGIG-NVFVKNLDRSVDNKTLYEHFSGFGKIL-SS 127
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
K+M+ D SKG+AF+++ S
Sbjct: 128 KVMS----------------------------------------DDQGSKGYAFVHFQSQ 147
Query: 213 EASDASIDAMHGQYLCNRPISVS-YAFKKDSKGDRHGSAAE 252
A++ +I+ M+G+ + +RP+ V+ + +KD + + A+E
Sbjct: 148 SAANCAIEQMNGKVINDRPVFVAPFKPRKDREAELRSRASE 188
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 88/218 (40%), Gaps = 59/218 (27%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D + + + +F + G ++V + D ++ +G+GF+ F E A A++ M
Sbjct: 192 VYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGKS-KGFGFVSFESHEAAKRAVEEM 250
Query: 97 NMIKLYGKPI---RVNKASSHQKNLD--------------VGANIFIGNLDPEVDEKLLY 139
N + G+ + R K Q L G +++ NLD VD++ L
Sbjct: 251 NGKDMNGQLVFVGRAQKKVERQAELKHMFEQMKKERIRRCQGVKLYVKNLDDTVDDEQLR 310
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS+FG I + K+M + G
Sbjct: 311 KEFSSFGSITRV-KVM----------------------------------------KEEG 329
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
S+GF I ++S E + ++ M+G+ L ++ +S++ A
Sbjct: 330 YSRGFGLICFSSPEEAAKALTEMNGRVLGSKALSIALA 367
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 10/177 (5%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E++++E F +GPV+++ + +D T+ GY ++ F DA+ A+
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQ--- 150
MN L+GKP+R+ + GA NIFI NLD +D K +YDTFS FG IL
Sbjct: 92 TMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKV 151
Query: 151 ------TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201
+ K + + N L G +F+G P R+ + G +
Sbjct: 152 AIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGET 208
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 117/297 (39%), Gaps = 74/297 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D + +GYGF+ F EE A A
Sbjct: 118 GAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDE-EGSSKGYGFVHFETEEAAQNA 176
Query: 93 IKIMNMIKLYGKPIRVNKASSH-QKNLDVG------ANIFIGNLDPEVDEKLLYDTFSAF 145
I+ +N + L GK + V K Q+N ++G N+++ N +++ L F+ +
Sbjct: 177 IQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKKYTNVYVKNFGDHYNKESLEKLFAKY 236
Query: 146 GVILQTPKIMNMIKLYG---------------------KPI----------RVNKASSHQ 174
G I + + K G P+ R K S
Sbjct: 237 GTITSCDVMTSDGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERH 296
Query: 175 KNLD--------------VGANIFIGNLD--------------------PEIMRDPDTGN 200
L G N+++ NLD ++M D + G
Sbjct: 297 AELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTD-ENGR 355
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAA 257
SKGF F+ + E + ++ M+ + +C++P+ V+ A +K+ + + S + LA+
Sbjct: 356 SKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRLAS 412
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 48/161 (29%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V+E +L++ FSA G +L Q P
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEIMRDP---------------- 196
MN L+GKP+R+ + GA NIFI NLD I
Sbjct: 92 TMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKV 151
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234
+ G+SKG+ F+++ + EA+ +I ++G L + + V
Sbjct: 152 AIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>gi|71033649|ref|XP_766466.1| polyadenylate binding protein [Theileria parva strain Muguga]
gi|68353423|gb|EAN34183.1| polyadenylate binding protein, putative [Theileria parva]
Length = 661
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 112/219 (51%), Gaps = 10/219 (4%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E+F GPV ++ + +D VT+ GY ++ + +DA A++
Sbjct: 27 ASLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAQEALE 86
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N I++ G P R+ ++ GA NIF+ NLD +D K LYDTFS FG IL
Sbjct: 87 NLNYIEIKGHPTRIMWSNRDPSLRRSGAGNIFVKNLDKSIDTKSLYDTFSHFGPILSCKV 146
Query: 154 IMN---MIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI---MRDPDTGNSKGFAFI 207
++ K YG N+ S+ + V + IG E+ +R D + + F +
Sbjct: 147 AVDASGASKRYGFVHYENEESAREAIEKVNG-MLIGGKRVEVAPFLRKQDRESEEVFTNL 205
Query: 208 NYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
+F A D +A+ Q+L S K+DSKG R
Sbjct: 206 YVRNFPA-DWDEEALR-QFLEKYGEITSMMLKEDSKGRR 242
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 116/275 (42%), Gaps = 68/275 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I+V LD + +++ F GP+++ + D + + YGF+ + EE A A
Sbjct: 113 GAGNIFVKNLDKSIDTKSLYDTFSHFGPILSCKVAVD-ASGASKRYGFVHYENEESAREA 171
Query: 93 IKIMNMIKLYGKPIRVNKASSHQ--KNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI-- 148
I+ +N + + GK + V Q ++ +V N+++ N + DE+ L +G I
Sbjct: 172 IEKVNGMLIGGKRVEVAPFLRKQDRESEEVFTNLYVRNFPADWDEEALRQFLEKYGEITS 231
Query: 149 ----------------LQTPKI-------MNMIKL--YGKPIRV---------------- 167
+ P++ +N +KL +P+ V
Sbjct: 232 MMLKEDSKGRRFAFVNYKEPEVAKEVVNTLNDLKLEESSEPLLVCPHQDKAKRQNLLRAQ 291
Query: 168 -NKASSHQKNLDVGANIFIGNLD--------------------PEIMRDPDTGNSKGFAF 206
N ++ Q++ V +N++I NLD ++M D + +S+GF F
Sbjct: 292 FNNSTMAQEDKRVTSNLYIKNLDDSFDDESLGELFKPFGTITSSKVMLDAN-NHSRGFGF 350
Query: 207 INYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
+ + + + + +I AMH + + +P+ V A K+D
Sbjct: 351 VCFTNPQEATKAIAAMHLKLVKGKPLYVGLAEKRD 385
>gi|302694831|ref|XP_003037094.1| hypothetical protein SCHCODRAFT_84062 [Schizophyllum commune H4-8]
gi|300110791|gb|EFJ02192.1| hypothetical protein SCHCODRAFT_84062 [Schizophyllum commune H4-8]
Length = 435
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 105/209 (50%), Gaps = 45/209 (21%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG--YGFIEFMGEEDADYAIK 94
+YVG L +V+E ++ E+F +GPV +V + DR Q H G YGF+E++ A+ A++
Sbjct: 18 LYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQ-HGGLNYGFVEYLDMRAAETALQ 76
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGAN---IFIGNLDPEVDEKLLYDTFSAFGVILQT 151
+N +++ IRVN A Q+N + N +F+G+L PEV++ +L FSAFG +
Sbjct: 77 TLNGRRIFDTEIRVNWAYQGQQNKEDTTNHYHVFVGDLSPEVNDDVLAKAFSAFGTL--- 133
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
D +M D ++G S+G+ F+ +
Sbjct: 134 ------------------------------------SDARVMWDMNSGKSRGYGFLAFRD 157
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKK 240
++ +I M+G++L +R I V++A +K
Sbjct: 158 KTDAEQAIATMNGEWLGSRAIRVNWANQK 186
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 32/219 (14%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++VG L +V++ ++ + F G + + + D + +GYGF+ F + DA+ AI M
Sbjct: 109 VFVGDLSPEVNDDVLAKAFSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATM 168
Query: 97 NMIKLYGKPIRVNKASSH-QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
N L + IRVN A+ Q +L G P + A G P M
Sbjct: 169 NGEWLGSRAIRVNWANQKTQGSLGGGGGGGGPVGSPIGGPPAMARPMGAGGA----PAPM 224
Query: 156 NMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP------------------EIMRDPD 197
N L G P+ + + + +++GNL P EI D
Sbjct: 225 N---LAGGPLSYEQVLTQTPAYNT--TVYVGNLVPYCTQADLIPLFQTIGYLSEIRMQAD 279
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSY 236
+GFAF+ + E + +I + GQ + RPI S+
Sbjct: 280 ----RGFAFVKLDTHEHAAMAIVQLQGQMVHGRPIKCSW 314
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 115/246 (46%), Gaps = 56/246 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F G V+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLHSDVTEAMLFEKFSTVGAVLSIRVCRDMITRRSLGYAYVNFQNMADAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN L G+P+R+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 62 TMNFDILKGRPMRIMWSQRDPSLRKSGVG-NVFIKNLDRSIDNKAMYDTFSAFGNILSCK 120
Query: 150 ------------------------QTPKIMNMIKLYGKPIRVNK---ASSHQKNLDVGA- 181
Q+ + +N + L GK + V + +K L A
Sbjct: 121 VAQDETGQSKGYGFVHFEMEQSATQSIEKVNGMLLNGKKVFVGRFVGRKDREKELGQKAK 180
Query: 182 ---NIFIGNLDPEI-------------------MRDPDTGNSKGFAFINYASFEASDASI 219
N++I N+D + + D G+S+GF F+ + E ++ ++
Sbjct: 181 LYTNVYIKNIDENVNDKELFEMFEKYGSITSFKVMFRDDGSSRGFGFVAFEDPEEAEKAV 240
Query: 220 DAMHGQ 225
+HG+
Sbjct: 241 TELHGK 246
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 121/282 (42%), Gaps = 73/282 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + M++ F G +++ + +D Q+ +GYGF+ F E+ A +
Sbjct: 88 GVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDETGQS-KGYGFVHFEMEQSATQS 146
Query: 93 IKIMNMIKLYGKPIRVNK---ASSHQKNLDVGA----NIFIGNLDPEVDEKLLYDTFSAF 145
I+ +N + L GK + V + +K L A N++I N+D V++K L++ F +
Sbjct: 147 IEKVNGMLLNGKKVFVGRFVGRKDREKELGQKAKLYTNVYIKNIDENVNDKELFEMFEKY 206
Query: 146 GVILQTPKIM-----------------------NMIKLYGKPI---------RVNKASSH 173
G I + K+M + +L+GK R K +
Sbjct: 207 GSIT-SFKVMFRDDGSSRGFGFVAFEDPEEAEKAVTELHGKESPEGKTYYVGRAQKKAER 265
Query: 174 QKNLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNS 201
Q+ L G N+++ NLD I +R D G S
Sbjct: 266 QQELKRKFEQYKIERMNRYQGVNLYVKNLDDTIDDERLRKEFSVFGTITSAKVMMDDGRS 325
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
KGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 326 KGFGFVCFSSPEEATKAVTDMNGRIVGTKPLYVALAQRKEDR 367
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 118/263 (44%), Gaps = 54/263 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 59 ASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKALE 118
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 119 ELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 178
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 179 AQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 238
Query: 182 --NIFIGNLDPEIMRD-------------------PDTGNSKGFAFINYASFEASDASID 220
N+++ N+ ++ D G S+GF F+N+ + E++ ++D
Sbjct: 239 FTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAVD 298
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
++ + + + V A KK +
Sbjct: 299 ELNNKDFHGQDLYVGRAQKKHER 321
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 120/264 (45%), Gaps = 59/264 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG LD V+++ ++++F Q G VV+V + +D T+ GYG++ + +DA A+
Sbjct: 37 TSLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAARALD 96
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
I+N KPIR+ + G NIFI NLD +D K L+DTFS+FG IL
Sbjct: 97 ILNFTPFNNKPIRIMYSHRDPSIRKSGTGNIFIKNLDKTIDHKALHDTFSSFGNILSCKV 156
Query: 154 I---------------------------MNMIKLYGKPIRV-------NKASSHQKNLDV 179
+N + L K + V + S+ K +
Sbjct: 157 ATDSSGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQVYVGHFLRKHERDSASNKKFN- 215
Query: 180 GANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N+++ NL IMRD D G SK F F+N+ + +A+ ++
Sbjct: 216 --NVYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDAD-GKSKCFGFVNFENTDAAAKAV 272
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
++++G+ + ++ V A KK +
Sbjct: 273 ESLNGKKIDDKEWYVGKAQKKSER 296
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 116/285 (40%), Gaps = 76/285 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + + F G +++ + D Q+ +GYGF++F EE A A
Sbjct: 123 GTGNIFIKNLDKTIDHKALHDTFSSFGNILSCKVATDSSGQS-RGYGFVQFDNEEAAQNA 181
Query: 93 IKIMNMIKLYGKPIRV-------NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
I +N + L K + V + S+ K + N+++ NL E+ L + F +
Sbjct: 182 IDKLNGMLLNDKQVYVGHFLRKHERDSASNKKFN---NVYVKNLSESTTEEDLKNIFGEY 238
Query: 146 GVIL---------------------------QTPKIMNMIKLYGKPIRVNKASSH-QKNL 177
G I + + +N K+ K V KA ++ L
Sbjct: 239 GEITSAVIMRDADGKSKCFGFVNFENTDAAAKAVESLNGKKIDDKEWYVGKAQKKSEREL 298
Query: 178 DV----------------GANIFIGNLDPEI--------------------MRDPDTGNS 201
++ G N++I NLD I MRDP +G S
Sbjct: 299 ELKSQFEQSMKEAVDKYQGVNLYIKNLDDSISDENLKELFSDFGMITSCKVMRDP-SGIS 357
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
+G F+ +++ E + ++ M+G+ + ++P+ V+ A +K+ + R
Sbjct: 358 RGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVALAQRKEERRAR 402
>gi|160333518|ref|NP_001103836.1| poly A binding protein, cytoplasmic 5 [Rattus norvegicus]
gi|149055477|gb|EDM07061.1| rCG38154 [Rattus norvegicus]
Length = 382
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 119/258 (46%), Gaps = 58/258 (22%)
Query: 39 VGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNM 98
VG LD V+E ++++ F +GP+ + +D VT++ GYG++ F DA++A+ MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 99 IKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI-- 154
+ GKP R+ ++ H + VG NIFI NLD +D + L+ FSAFG IL +
Sbjct: 82 DLINGKPFRLMWSQPDDHLRKSGVG-NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD 140
Query: 155 ------------------------MNMIKLYGKPIRVNK--------ASSHQKNLDVGAN 182
MN ++L + + V + A ++ N
Sbjct: 141 DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 183 IFIGN----LDPE----------------IMRDPDTGNSKGFAFINYASFEASDASIDAM 222
+F+ N +D E ++RD TG SKGF F+ Y + EA+ ++ +
Sbjct: 201 VFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDA-TGKSKGFGFVRYETHEAAQKAVLEL 259
Query: 223 HGQYLCNRPISVSYAFKK 240
HG+ + + + V A KK
Sbjct: 260 HGKSIDGKVLCVGRAQKK 277
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 87/218 (39%), Gaps = 59/218 (27%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++V D + + + +LF + GP +V + +D T +G+GF+ + E A A+
Sbjct: 199 TNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRD-ATGKSKGFGFVRYETHEAAQKAVL 257
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDV-----------------GANIFIGNLDPEVDEKL 137
++ + GK + V +A + L G I+I NLD ++++
Sbjct: 258 ELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDEK 317
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + FS FG I + +M +
Sbjct: 318 LKEEFSLFGSISRAKVMM-----------------------------------------E 336
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235
G KGF + ++SFE + +++ M+G+ + ++ + V+
Sbjct: 337 VGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVT 374
>gi|443895761|dbj|GAC73106.1| polyadenylate-binding protein [Pseudozyma antarctica T-34]
Length = 556
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 118/262 (45%), Gaps = 55/262 (20%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ F+ D + A++
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 106
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP-- 152
+N + +P R+ + G NIFI NLD +D K L+DTF+AFG IL
Sbjct: 107 LNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVA 166
Query: 153 -----------------------------KIMNMIKLY-GKPI-RVNKASSHQKNLDVGA 181
++N K+Y G I R + + +++
Sbjct: 167 TSESGSLGYGFVHYETAEAADAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRARFT 226
Query: 182 NIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASIDA 221
N++ N+D ++ RD D G SKGF F+N+ + + + ++D
Sbjct: 227 NVYCKNVDADVTDEEFEKLFTKYGKITSCVLQRDED-GKSKGFGFVNFENHDEAQTAVDE 285
Query: 222 MHGQYLCNRPISVSYAFKKDSK 243
+H + + V+ A KK +
Sbjct: 286 LHDSDFKGQKLFVARAQKKSER 307
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 61/240 (25%)
Query: 21 QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGF 80
Q K+E ES +Y +D V++ +LF + G + + + +D ++ +G+GF
Sbjct: 215 QAKIE---ESRARFTNVYCKNVDADVTDEEFEKLFTKYGKITSCVLQRDEDGKS-KGFGF 270
Query: 81 IEFMGEEDADYAIKIMNMIKLYGKPI---RVNKASSHQKNLDV--------------GAN 123
+ F ++A A+ ++ G+ + R K S ++ L G N
Sbjct: 271 VNFENHDEAQTAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVN 330
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+++ N+ D++ L D F+ FG I
Sbjct: 331 LYLKNIPESYDDERLRDEFAPFGAITSC-------------------------------- 358
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+IMR P +G S+GF F+ Y++ E ++ ++ M+G+ L NRP+ V+ A +KD +
Sbjct: 359 -------KIMRAP-SGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVR 410
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 116/262 (44%), Gaps = 54/262 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG L+ V+ET +++LF Q G VV++ + +D ++ GYG++ + DA AI+
Sbjct: 29 TSLYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQAIE 88
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
++N + GKPIR+ + G NI+I NLD +D K L+DTFSAFG IL
Sbjct: 89 VLNFTPVNGKPIRIMYSYRDPTIRKSGTGNIYIKNLDKAIDNKALHDTFSAFGSILSCKV 148
Query: 153 -------------------------------KIMNMIKLYGKPIRVNKASSHQKNLDVGA 181
++N ++Y P + +
Sbjct: 149 ATDSLGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGPFLRKQERESAIDKATFN 208
Query: 182 NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASIDA 221
N+++ NL +MRD + G S+ F F+N+ + + + S++A
Sbjct: 209 NVYVKNLSETTTEEDLKKIFGEYGTITSAVVMRDGN-GKSRCFGFVNFENPDDAAQSVEA 267
Query: 222 MHGQYLCNRPISVSYAFKKDSK 243
++G+ + V A KK +
Sbjct: 268 LNGKTFDEKEWYVGKAQKKSER 289
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 130/331 (39%), Gaps = 81/331 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G IY+ LD + + + F G +++ + D + Q+ GYGF++F EE A A
Sbjct: 115 GTGNIYIKNLDKAIDNKALHDTFSAFGSILSCKVATDSLGQSL-GYGFVQFDNEESAKNA 173
Query: 93 IKIMNMIKLYGKPIRVN---KASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGV 147
I +N + L K + V + + +D N+++ NL E+ L F +G
Sbjct: 174 IDKLNGMLLNDKQVYVGPFLRKQERESAIDKATFNNVYVKNLSETTTEEDLKKIFGEYGT 233
Query: 148 IL---------------------------QTPKIMNMIKLYGKPIRVNKASSH-QKNLDV 179
I Q+ + +N K V KA ++ +++
Sbjct: 234 ITSAVVMRDGNGKSRCFGFVNFENPDDAAQSVEALNGKTFDEKEWYVGKAQKKSEREVEL 293
Query: 180 ----------------GANIFIGNLDPEI--------------------MRDPDTGNSKG 203
G N+++ NLD I MRDP+ G S+G
Sbjct: 294 KGRFEQTLKETVDKFQGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPN-GVSRG 352
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F+ +++ E + ++ M+G+ + ++P+ V+ A +K+ + R + ++ A P
Sbjct: 353 SGFVAFSTAEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQYSQIRPAMAPPIG 412
Query: 264 ADRP----------HQLFADAPPPAPLPPPP 284
P HQLF PPA +PP P
Sbjct: 413 PRMPIYPPGTPGIGHQLFYGQGPPAIVPPQP 443
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 126/262 (48%), Gaps = 59/262 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L+++ F GPV+++ + +D VT+ GY ++ F+ DA A+
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K LY+ FSAFG IL +
Sbjct: 70 TMNFDTIKGKSIRLMWSQRDAYLRKSGIG-NVFIKNLDKSIDNKTLYEHFSAFGKIL-SS 127
Query: 153 KIMN----------------------MIKLYGKPI------------RVNKASSHQKNLD 178
K+M+ + ++ G + R ++ + Q +
Sbjct: 128 KVMSDDQGSRGYAFVHFQNQMAADRAIEEMNGALLKDCRLFVGRFKNRQDREAELQNKAN 187
Query: 179 VGANIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDAS 218
NI+I N + ++M D TG SKGF F+++ S EA+ +
Sbjct: 188 EFTNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDS-TGKSKGFGFVSFYSHEAAQKA 246
Query: 219 IDAMHGQYLCNRPISVSYAFKK 240
++ M+G+ + + + V A KK
Sbjct: 247 VEEMNGKDINGQLLFVGRAQKK 268
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 59/218 (27%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IY+ D + + + E+F + G V+V + D T +G+GF+ F E A A++ M
Sbjct: 192 IYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDS-TGKSKGFGFVSFYSHEAAQKAVEEM 250
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N + G+ + R K + Q L G ++I NLD +D++ L
Sbjct: 251 NGKDINGQLLFVGRAQKKAERQAELKQMFEQQKQERFRRCQGVKLYIKNLDDTIDDEKLR 310
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS+FG I + K+M + G
Sbjct: 311 REFSSFGSISRV-KVM----------------------------------------KEEG 329
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
SKGF I ++S E + ++ M+G+ L ++P++++ A
Sbjct: 330 RSKGFGLICFSSPEEATRAMTEMNGRILGSKPLNIALA 367
>gi|74199920|dbj|BAE20776.1| unnamed protein product [Mus musculus]
Length = 266
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 121/258 (46%), Gaps = 57/258 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY + F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG N+FI NL+ +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRRSGVG-NVFIKNLNKTIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVG----- 180
+ MN + L + + V + S ++ ++G
Sbjct: 130 VVSDENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKE 189
Query: 181 -ANIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D + G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTD-EGGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYA 237
D M+G+ L + I V A
Sbjct: 249 DEMNGKELNGKHIYVGRA 266
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 122/268 (45%), Gaps = 58/268 (21%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D A++YVG L+ V+E L++E+F G V ++ + +D VT+ GY ++ F ED +
Sbjct: 48 DTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEK 107
Query: 92 AIKIMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
AI+ +N + G+P R+ + S ++N D NIFI NL P +D K L+DTF+AFG I
Sbjct: 108 AIEDLNYSLIEGRPCRIMWSQRDPSLRRNGD--GNIFIKNLHPAIDNKALHDTFTAFGKI 165
Query: 149 LQTPKI---MNMIKLYG------------------------------------------K 163
L M + K +G +
Sbjct: 166 LSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFE 225
Query: 164 PIRVNKASSHQKNLDVG------ANIF--IGNLDPEIMRDPDTGNSKGFAFINYASFEAS 215
++ N + + KN+D+ +F G + + G SKGF F+N+ + E++
Sbjct: 226 EMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESA 285
Query: 216 DASIDAMHGQYLCNRPISVSYAFKKDSK 243
++D ++ + + + I V A KK +
Sbjct: 286 VKAVDELNDKEINGQKIYVGRAQKKRER 313
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 116/297 (39%), Gaps = 73/297 (24%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+Y +D SE +LF G + ++++ KD ++ +G+GF+ F E A A+
Sbjct: 232 TNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKS-KGFGFVNFENHESAVKAVD 290
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLD-----------------VGANIFIGNLDPEVDEKL 137
+N ++ G+ I V +A ++ L+ G N+FI NLD +D +
Sbjct: 291 ELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEK 350
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + F FG I +M D +
Sbjct: 351 LEEEFKPFGSITSA---------------------------------------RVMVD-E 370
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR--HGSAAERLL 255
TG SKGF F+ ++S E + +I M+ + + +P+ V+ A +KD + + A +
Sbjct: 371 TGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRSQLEQQIQARNQM 430
Query: 256 AAQNPLSQADRPHQ-----LFADAP---PP-----APLPPPPPPINIMGLPPPPPSG 299
QN + P Q + P PP P P P P + + PPP G
Sbjct: 431 RMQNAAATGGIPGQFIPPMFYGQQPGFFPPNGRGNGPFPGPNPQMMMPRGQIPPPQG 487
>gi|405977322|gb|EKC41780.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 646
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 128/275 (46%), Gaps = 56/275 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 16 ASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 75
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 76 TMNFDTIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 134
Query: 153 KI--------------------------MNMIKLYGKPIRVNKASSHQKNLDVGA----- 181
+ +N + L GK + V + S ++ L+V
Sbjct: 135 IVCDEHGSRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLGDKMRK 194
Query: 182 --NIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASI 219
N+++ N EI M D +G KGF F+++ EA++ ++
Sbjct: 195 FNNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAV 254
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
+A++G + + V A KK + ER+
Sbjct: 255 EALNGNDNSGKILYVGRAQKKIERQAELKEKFERI 289
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 126/311 (40%), Gaps = 75/311 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GYGF+ F EE A A
Sbjct: 102 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVCDE--HGSRGYGFVHFETEEAARIA 159
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA-------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ +N + L GK + V + S ++ L+V N+++ N E++++ L D F +
Sbjct: 160 IEKVNGMLLNGKKVFVGRFMSRRERLEVLGDKMRKFNNVYVKNFSEEINDETLRDMFEPY 219
Query: 146 GVILQTPKIM-----------------------------NMIKLYGKPIRVNKASS---- 172
G I+ + K+M N GK + V +A
Sbjct: 220 GKII-SAKVMTDDGSGKGKGFGFVSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIER 278
Query: 173 -------------HQKNLDVGANIFIGNLDPEI----MRD--------------PDTGNS 201
+ N G N+++ NLD I +R + G S
Sbjct: 279 QAELKEKFERIRMERINRYQGVNLYVKNLDDNIDDERLRKEFAQFGTITSAKVMTEGGRS 338
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK-DSKGDRHGSAAERLLAAQNP 260
KGF F+ ++S E + ++ M+G+ + +P+ V+ A +K D K +R+ + +
Sbjct: 339 KGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVALAQRKEDRKAHLASQYMQRITSMRMQ 398
Query: 261 LSQADRPHQLF 271
Q + Q+F
Sbjct: 399 GQQIGQVSQMF 409
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 127/274 (46%), Gaps = 56/274 (20%)
Query: 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
+ GG + ++YVG L+ V+++ +++LF Q G VV+V + +D T+ GYG++ +
Sbjct: 13 VNGGANAPYVTTSLYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNY 72
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTF 142
+DA A+ ++N L G PIR+ + G+ NIFI NLD +D K L+DTF
Sbjct: 73 SSPQDAARALDMLNFTPLNGSPIRIMYSHRDPSVRKSGSGNIFIKNLDKGIDHKALHDTF 132
Query: 143 SAFGVILQTPKIMN---MIKLYGKPIRVNKASSHQKNLD-------------VG------ 180
SAFG IL + K YG ++ + S QK ++ VG
Sbjct: 133 SAFGNILSCKVATDSSGQSKGYGF-VQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQ 191
Query: 181 -----------ANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINY 209
N+++ NL +MRD D G +K F F+N+
Sbjct: 192 ERESAIDKTRFNNVYVKNLSETTTEEDLKKAFGEYGTITSAVVMRDGD-GKTKCFGFVNF 250
Query: 210 ASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ + + +++A++G+ ++ V A KK+ +
Sbjct: 251 ENADDAATAVEALNGKKFDDKEWFVGKAQKKNER 284
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 126/323 (39%), Gaps = 82/323 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + + F G +++ + D Q+ +GYGF++F EE A A
Sbjct: 110 GSGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDSSGQS-KGYGFVQFDNEESAQKA 168
Query: 93 IKIMNMIKLYGKPIRVN---KASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGV 147
I+ +N + L K + V + + +D N+++ NL E+ L F +G
Sbjct: 169 IEKLNGMLLNDKQVYVGPFLRKQERESAIDKTRFNNVYVKNLSETTTEEDLKKAFGEYGT 228
Query: 148 ILQT---------PKIMNMIK-------------LYGKPI--------RVNKASSHQKNL 177
I K + L GK + K + + L
Sbjct: 229 ITSAVVMRDGDGKTKCFGFVNFENADDAATAVEALNGKKFDDKEWFVGKAQKKNERENEL 288
Query: 178 DV--------------GANIFIGNLDPEI--------------------MRDPDTGNSKG 203
V GAN++I NLD I MRDP+ G S+G
Sbjct: 289 KVRFEQSMKEAADKFQGANLYIKNLDDSIGDDRLKQLFSPFGTITSCKVMRDPN-GISRG 347
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F+ +++ E + ++ M+G+ + ++P+ V+ A +K+ + R L AQ SQ
Sbjct: 348 SGFVAFSTPEEASKALMEMNGKMVVSKPLYVALAQRKEDRRAR--------LQAQ--FSQ 397
Query: 264 ADRPHQLFADAPPPAPLPPPPPP 286
RP + P P+ PP P
Sbjct: 398 I-RPVAMAPSVAPRMPMYPPGGP 419
>gi|194753367|ref|XP_001958985.1| GF12652 [Drosophila ananassae]
gi|190620283|gb|EDV35807.1| GF12652 [Drosophila ananassae]
Length = 639
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 127/266 (47%), Gaps = 59/266 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E+ +++ F +GPV+++ + +D +++ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN L KPIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 62 TMNFDLLRNKPIRIMWSQRDPSLRRSGVG-NVFIKNLDKTIDNKAIYDTFSAFGNILSCK 120
Query: 153 ----------------------------KIMNMIKLYGKPIRVNK---ASSHQKNLDVGA 181
K+ M+ L GK + V K +K L A
Sbjct: 121 VATDEKANSKGYGFVHFETEEAANTSIDKVNGML-LNGKKVYVGKFIPRKEREKELGEKA 179
Query: 182 ----NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDAS 218
N+++ N D E +++ + G SKGF F+ + + EA++A+
Sbjct: 180 KLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAA 239
Query: 219 IDAMHGQYLCN-RPISVSYAFKKDSK 243
+ A++G+ + + + V+ A KK +
Sbjct: 240 VQALNGKDMGEGKSLYVARAQKKAER 265
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/336 (21%), Positives = 130/336 (38%), Gaps = 87/336 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D + +GYGF+ F EE A+ +
Sbjct: 88 GVGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKVATDEKANS-KGYGFVHFETEEAANTS 146
Query: 93 IKIMNMIKLYGKPIRVNK---ASSHQKNLDVGA----NIFIGNLDPEVDEKLLYDTFSAF 145
I +N + L GK + V K +K L A N+++ N + D++ L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 146 GVILQTPKIMN-----------------------MIKLYGKPI---------RVNKASSH 173
G I + K+M+ + L GK + R K +
Sbjct: 207 GKIT-SYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAER 265
Query: 174 QKNLD--------------VGANIFIGNLD--------------------PEIMRDPDTG 199
Q+ L G N+++ NLD ++M D + G
Sbjct: 266 QQELKRKFEELKKKRHDSAFGVNLYVKNLDDSIDDERLCKEFSPYGTITSAKVMTDEE-G 324
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
SKGF F+ + S + ++ ++G+ + ++P+ V+ A +K+ + S R +
Sbjct: 325 RSKGFGFVCFISANEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHMTGM- 383
Query: 260 PLSQADRPHQLFADAPPPAP----LPPPPPPINIMG 291
R QL PP A +P PP G
Sbjct: 384 ------RMQQLGQIFPPNAAGGFFVPTMPPNQRFFG 413
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 124/279 (44%), Gaps = 56/279 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 59 ASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKALE 118
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 119 ELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 178
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 179 AQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 238
Query: 182 --NIFIGNLDPEIMRD-------------------PDTGNSKGFAFINYASFEASDASID 220
N+++ N+ ++ D G S+GF F+N+ + E++ ++D
Sbjct: 239 FTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESAFKAVD 298
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
++ + + + V A KK + + R A RL A
Sbjct: 299 ELNNKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKA 337
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 129/306 (42%), Gaps = 46/306 (15%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+YV + V+E +LF + G V + + +D+ ++ +G+GF+ F E A A+
Sbjct: 241 NVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKS-RGFGFVNFTTHESAFKAVDE 299
Query: 96 MNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N +G+ + V +A H++ ++ G N++I NLD +VD+ L
Sbjct: 300 LNNKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDKL 359
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKN-----LDVGANIFIGNLDPEIM 193
+ F FG I + K+M G + K S ++N +V + D
Sbjct: 360 REMFKDFGSIT-SAKVMRETPTEGDEDKKEKDESDKENQEEVKEEVKEESKEESKDETKE 418
Query: 194 RDPDT----------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ D G SKGF F+ +++ + + ++ M+ + +P+ V+ A +KD +
Sbjct: 419 GEEDKKAEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMFNGKPLYVALAQRKDVR 478
Query: 244 GDRHGSA--AERLLAAQNPLSQADRPHQ------LFADAPPPAPLPPP----PPPINIMG 291
+ ++ A L Q + A P Q FA P +P P P MG
Sbjct: 479 KSQLEASIQARNQLRMQQAAAVAGMPQQYMQPPVYFAPGQQPGYMPQGGRGVPFPQGAMG 538
Query: 292 LPPPPP 297
+P P
Sbjct: 539 MPQGRP 544
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 116/262 (44%), Gaps = 54/262 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG LD V++ +++LF Q G VV+V + +D ++ GYG++ F +DA A+
Sbjct: 28 TSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALD 87
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
++N L +PIR+ + G NIFI NLD +D K L+DTFS FG IL
Sbjct: 88 VLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKV 147
Query: 153 -------------------------------KIMNMIKLYGKPIRVNKASSHQKNLDVGA 181
++N ++Y P + +
Sbjct: 148 ATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTADKAKFN 207
Query: 182 NIFIGNL-----DPE---------------IMRDPDTGNSKGFAFINYASFEASDASIDA 221
N+F+ NL D E +MRD D G SK F F+N+ + + + +++A
Sbjct: 208 NVFVKNLSESTTDDELKNVFGEFGTITSAVVMRDGD-GKSKCFGFVNFENADDAARAVEA 266
Query: 222 MHGQYLCNRPISVSYAFKKDSK 243
++G+ ++ V A KK +
Sbjct: 267 LNGKKFDDKEWYVGKAQKKSER 288
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/332 (21%), Positives = 128/332 (38%), Gaps = 82/332 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + + F G +++ + D Q+ +GYGF++F EE A A
Sbjct: 114 GQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQS-KGYGFVQFDNEESAQKA 172
Query: 93 IKIMNMIKLYGKPIRVN---KASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGV 147
I+ +N + L K + V + + D N+F+ NL + L + F FG
Sbjct: 173 IEKLNGMLLNDKQVYVGPFLRKQERESTADKAKFNNVFVKNLSESTTDDELKNVFGEFGT 232
Query: 148 IL---------------------------QTPKIMNMIKLYGKPIRVNKA---SSHQKNL 177
I + + +N K K V KA S + L
Sbjct: 233 ITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVGKAQKKSERENEL 292
Query: 178 D--------------VGANIFIGNLDP--------------------EIMRDPDTGNSKG 203
GAN+++ NLD ++MRDP+ G S+G
Sbjct: 293 KQRFEQSMKEAADKYQGANLYVKNLDDSLGDDKLKELFSPFGTITSCKVMRDPN-GISRG 351
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F+ +++ + + ++ M+G+ + ++P+ V+ A +K+ + R + ++ P S
Sbjct: 352 SGFVAFSTPDEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMPPSV 411
Query: 264 ADRP-----------HQLFADAPPPAPLPPPP 284
R Q+F PPA +P P
Sbjct: 412 GPRVPMYPPGGPGIGQQIFYAQGPPAIIPSQP 443
>gi|323352217|gb|EGA84754.1| Hsh49p [Saccharomyces cerevisiae VL3]
Length = 188
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 53/212 (25%)
Query: 57 QSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM-NMIKLYGKPIRVNKASSHQ 115
+S PV+ + PKD+V Q +QGY FIEF + DA YAIKIM N ++LY + I+V + ++
Sbjct: 6 RSTPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKIMNNTVRLYDRLIKVRQVTNST 65
Query: 116 KNLDVGANI-----------FIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKP 164
++ +NI FI NL +D L F+ FG +++ P+I
Sbjct: 66 GTTNLPSNISKDMILPIAKLFIKNLADSIDSDQLVKIFNKFGKLIREPEIF--------- 116
Query: 165 IRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHG 224
++ N G K A++ + FE +D +I +++
Sbjct: 117 -------------------YLSN-----------GKLKC-AYVYFEDFEKADLAIKSLNN 145
Query: 225 QYLCNRPISVSYAFKKDSKGD-RHGSAAERLL 255
Q + N I+V YAFK++ KG+ ++G +RLL
Sbjct: 146 QLVANNRITVDYAFKENGKGNAKYGDDVDRLL 177
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 103/211 (48%), Gaps = 42/211 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++Y+G L +V+E ++E+F GPV ++ + +D VT+ GY ++ + DA+ A+
Sbjct: 9 ASLYIGDLLPEVNEGFLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQVADAERALD 68
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN ++ GKP R+ ++ + VG NIF+ NL +D K LYDTFS FG IL
Sbjct: 69 SMNFTEIKGKPCRIMWSQRDPSMRRSGVG-NIFVKNLHEGIDNKQLYDTFSLFGNILSC- 126
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
+++ D TG SKG+ +++Y +
Sbjct: 127 --------------------------------------KVVTDKATGLSKGYGYVHYETN 148
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
EA+ ++I+ + G + + + V ++D++
Sbjct: 149 EAAASAIEKLDGMLIDGKEVQVGVFMRRDNR 179
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/322 (20%), Positives = 127/322 (39%), Gaps = 82/322 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I+V L + + +++ F G +++ + D+ T +GYG++ + E A A
Sbjct: 95 GVGNIFVKNLHEGIDNKQLYDTFSLFGNILSCKVVTDKATGLSKGYGYVHYETNEAAASA 154
Query: 93 IKIMNMIKLYGKPIRVN---KASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
I+ ++ + + GK ++V + + D N+FI N+ E E L + F FG ++
Sbjct: 155 IEKLDGMLIDGKEVQVGVFMRRDNRPGQAD-WTNVFIKNIPFEWTEDKLREEFEGFGEVV 213
Query: 150 QTP-------------------------KIMN----MIKLYGKPI-------RVNKASSH 173
K MN + G+ + R K +
Sbjct: 214 SAKPKEVQGSLGFGFVNFATHEAAAAAVKEMNDKEFTVTEDGEEVTKVLFVGRAQKKAER 273
Query: 174 QKNLDV--------------GANIFIGNLD--------------------PEIMRDPDTG 199
++ L G N+++ NLD +M+D TG
Sbjct: 274 ERELRAKYEAEKIDRIAKFQGVNLYVKNLDDTVTDDVLRDEFSAMGTITSARVMKDLKTG 333
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
S+GF F+ Y++ E + +++ M+G+ + +PI V+ A ++D + + L AQ+
Sbjct: 334 ISRGFGFVCYSTPEDATRAVNEMNGKIILGKPIFVALAQRRDVRRAQ--------LEAQH 385
Query: 260 PLSQADRPHQLFADAPPPAPLP 281
+ + P + P P+P
Sbjct: 386 NQGRGNLPGPMGGAYPGAVPMP 407
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 122/263 (46%), Gaps = 56/263 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG L + V + ++++F Q G VV+V + +D ++ GY ++ + + DA A++
Sbjct: 35 TSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALE 94
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
++N + GKPIR+ ++ + G NIFI NLD +D K LYDTF AFG IL K
Sbjct: 95 LLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSC-K 153
Query: 154 I----------------------------MNMIKLYGKPIRVNKASSHQKNLDVGANI-- 183
I +N + + K + V Q +V +NI
Sbjct: 154 IATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNIKF 213
Query: 184 ---FIGNL-----DPE---------------IMRDPDTGNSKGFAFINYASFEASDASID 220
++ NL D E +MRD D G S+ F F+N+ + +A+ ++
Sbjct: 214 SNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSD-GKSRCFGFVNFENADAAAQAVQ 272
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
++G+ ++ + V A KK +
Sbjct: 273 ELNGKIFNDKELYVGRAQKKSER 295
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 79/371 (21%), Positives = 133/371 (35%), Gaps = 102/371 (27%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D ++ GYGF++F +E A A
Sbjct: 121 GTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESR-GYGFVQFEKDESAQSA 179
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGANI-----FIGNLDPEVDEKLLYDTFSAFGV 147
I +N + + K + V Q +V +NI ++ NL V + L + F +G
Sbjct: 180 IDKLNGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGT 239
Query: 148 ILQTP--------------------------------KIMNMIKLYGKPIRVNKASSHQK 175
I KI N +LY R K S +
Sbjct: 240 ITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYVG--RAQKKSEREM 297
Query: 176 NLD--------------VGANIFIGNLDPEI--------------------MRDPDTGNS 201
L N+++ NL+ I MRD + G S
Sbjct: 298 ELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSN-GVS 356
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK-DSKGDRHGSAAERLLAAQNP 260
+G F+ + S E ++ ++ M+G+ + ++P+ V+ A +K D K ++ A P
Sbjct: 357 RGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKAKLQAQFSQMRPVAMAP 416
Query: 261 LSQADRP----------HQLFADAPPPAPLPPPPP----------------PINIMGLPP 294
P QLF PPPA + P P P+ G P
Sbjct: 417 SVGPRMPMFPPGVPGVGQQLFYGQPPPAFINPQQPLMPGMRPGGPMPNFMMPMVQQGQQP 476
Query: 295 PPPSGLRASAL 305
P+G RA +
Sbjct: 477 QRPAGRRAGGM 487
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 102/219 (46%), Gaps = 44/219 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD VSE L++++F G V ++ + +D +T+T GY ++ F E AI+
Sbjct: 42 ASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIE 101
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + G P R+ + G+ NIFI NL P++D K L+DTFS FG IL
Sbjct: 102 KLNYAPIKGVPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKALHDTFSVFGNILSC-- 159
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+I D + GNS+GF F+++ E
Sbjct: 160 -------------------------------------KIATD-EAGNSRGFGFVHFEDDE 181
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
A+ +IDA++G L + + Y + SK DR E
Sbjct: 182 AAKEAIDAINGMLLNGQEV---YVAQHVSKKDRQSKLDE 217
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 97/240 (40%), Gaps = 61/240 (25%)
Query: 21 QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGF 80
Q+KL+ E+ +YV + + E F + GP+ + H+ KD + +G+GF
Sbjct: 212 QSKLD---EAKANFTNVYVKNIHPDTGDEEFEEFFTKVGPITSAHLEKDNEGKL-RGFGF 267
Query: 81 IEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLD-----------------VGAN 123
+ + DA A++ +N G+ + V +A + L G N
Sbjct: 268 VNYENHNDAAKAVEELNETDFKGQTLHVGRAQKKHERLQELKKQYEAFRLEKLEKYQGVN 327
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+F+ NLD +D++ L + F+ +G I
Sbjct: 328 LFVKNLDDTIDDQKLEEEFAPYGTITSV-------------------------------- 355
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++MR + G SKGF F+ +++ E + +I + Q + +P+ V+ A +KD +
Sbjct: 356 -------KVMRS-ENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVR 407
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 118/264 (44%), Gaps = 55/264 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E+ ++E+F + G V ++ + +B VT+ Y ++ + E+A++A+
Sbjct: 60 ASLYVGDLDPSVTESDLYEIFSKVGQVSSIRVCRBAVTKKSLCYAYVNYQKREEAEHALD 119
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+ + GK R+ + G N+FI NL P++D K LYDTFS FG IL
Sbjct: 120 TLAFCDIKGKQCRIMWSQRDPSMRKKGTGNVFIKNLHPDIDNKTLYDTFSTFGKILSCKI 179
Query: 153 -------------------------------KIMNMIKLYGKPI--RVNKASSHQKNLDV 179
++N +++Y P R ++ S Q+ +
Sbjct: 180 ATDEHGHSKGFGFVHYDDAESAKAAIENVNGMLLNNMEVYVAPHIPRKDRESKMQEMIKN 239
Query: 180 GANIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
N+++ N PE+ D + G ++GF F+N+ + ++D
Sbjct: 240 FTNVYVKNFGPEMTEDQLREMFEAYGKVTSTYLPTDNEGKARGFGFVNFEDHXEAAKAVD 299
Query: 221 AMHGQYL-CNRPISVSYAFKKDSK 243
A++ + L R + V A KK +
Sbjct: 300 ALNEKELEGGRILYVGRAQKKRER 323
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 109/290 (37%), Gaps = 78/290 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV +++E + E+F G V + ++P D + +G+GF+ F +A A+ +
Sbjct: 243 VYVKNFGPEMTEDQLREMFEAYGKVTSTYLPTDNEGKA-RGFGFVNFEDHXEAAKAVDAL 301
Query: 97 NMIKLYGKPI----RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLL 138
N +L G I R K +++L G N+F+ NLD +D+ L
Sbjct: 302 NEKELEGGRILYVGRAQKKREREESLRKQWQQARQERISKYQGVNLFVKNLDDTIDDTKL 361
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
+ F+ +G I + N D
Sbjct: 362 KEEFAPYGKITSAKVMTN----------------------------------------DA 381
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ 258
G S+GF F+ Y E + +I+ MH + + +P+ V+ A +K+ RH
Sbjct: 382 GKSRGFGFVCYTKPEEATRAINEMHQRMVMGKPLYVALAQRKEV---RH----------- 427
Query: 259 NPLSQ--ADRPHQLFADAPPPAPLPPPPPPI---NIMGLPPPPPSGLRAS 303
N LSQ R A + P+ G PP P+G+R +
Sbjct: 428 NQLSQQFQQRNQMRLQQAAVQGGMGQFVAPMFYGQNAGFIPPMPAGVRGA 477
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 122/262 (46%), Gaps = 56/262 (21%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG L + V + ++++F Q G VV+V + +D ++ GY ++ + + DA A+++
Sbjct: 36 SLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALEL 95
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI 154
+N + GKPIR+ ++ + G NIFI NLD +D K LYDTF AFG IL KI
Sbjct: 96 LNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSC-KI 154
Query: 155 ----------------------------MNMIKLYGKPIRVNKASSHQKNLDVGANI--- 183
+N + + K + V Q +V +NI
Sbjct: 155 ATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNIKFS 214
Query: 184 --FIGNL-----DPE---------------IMRDPDTGNSKGFAFINYASFEASDASIDA 221
++ NL D E +MRD D G S+ F F+N+ + +A+ ++
Sbjct: 215 NVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSD-GKSRCFGFVNFENADAAAQAVQE 273
Query: 222 MHGQYLCNRPISVSYAFKKDSK 243
++G+ ++ + V A KK +
Sbjct: 274 LNGKIFNDKELYVGRAQKKSER 295
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/332 (21%), Positives = 122/332 (36%), Gaps = 86/332 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D ++ GYGF++F +E A A
Sbjct: 121 GTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESR-GYGFVQFEKDESAQSA 179
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGANI-----FIGNLDPEVDEKLLYDTFSAFGV 147
I +N + + K + V Q +V +NI ++ NL V + L + F +G
Sbjct: 180 IDKLNGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGT 239
Query: 148 ILQTP--------------------------------KIMNMIKLYGKPIRVNKASSHQK 175
I KI N +LY R K S +
Sbjct: 240 ITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYVG--RAQKKSEREM 297
Query: 176 NLD--------------VGANIFIGNLDPEI--------------------MRDPDTGNS 201
L N+++ NL+ I MRD + G S
Sbjct: 298 ELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSN-GVS 356
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK-DSKGDRHGSAAERLLAAQNP 260
+G F+ + S E ++ ++ M+G+ + ++P+ V+ A +K D K ++ A P
Sbjct: 357 RGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKAKLQAQFSQMRPVAMAP 416
Query: 261 LSQADRP----------HQLFADAPPPAPLPP 282
P QLF PPPA + P
Sbjct: 417 SVGPRMPMFPPGVPGVGQQLFYGQPPPAFINP 448
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 101/218 (46%), Gaps = 45/218 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG LD V + ++++F Q G VV+V + +D T+ GY ++ F DA A++
Sbjct: 39 TSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALE 98
Query: 95 IMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
++N + GKPIR+ N+ S +K+ ANIFI NLD +D K LYDTFS FG IL
Sbjct: 99 MLNFTPINGKPIRIMYSNRDPSSRKS--GAANIFIKNLDKSIDNKALYDTFSVFGNILSC 156
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
M +G SKG+ F+ +
Sbjct: 157 KVATEM----------------------------------------SGESKGYGFVQFEL 176
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
EA+ +I ++G L ++ + V +K + + G+
Sbjct: 177 EEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGN 214
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 130/331 (39%), Gaps = 83/331 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + +++ F G +++ + + ++ +GYGF++F EE A A
Sbjct: 125 GAANIFIKNLDKSIDNKALYDTFSVFGNILSCKVATE-MSGESKGYGFVQFELEEAAQNA 183
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA-----NIFIGNLDPEVDEKLLYDTFSAFG- 146
I +N + L K + V Q+ +V N+++ NL E L + F FG
Sbjct: 184 ISKLNGMLLNDKKVYVGPFVRKQERENVSGNPKFNNVYVKNLSESTTEDNLKEIFGKFGP 243
Query: 147 ----VILQ----TPKIMNMIK-------------LYGKPI--------RVNKASSHQKNL 177
V+++ + + L GK R K S + L
Sbjct: 244 ITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYVCRAQKKSEREMEL 303
Query: 178 --------------DVGANIFIGNLDPEI---------------------MRDPDTGNSK 202
+ G N+++ NLD I MRD + G SK
Sbjct: 304 KEKFEKNIKEAADKNQGTNLYLKNLDDSIDDDEKLKEIFADFGTITSCKVMRDLN-GVSK 362
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLS 262
G F+ + S E + ++ AM+G+ + ++P+ V+ A +K+ + R + ++ P S
Sbjct: 363 GSGFVAFKSAEDASRALVAMNGKMIGSKPLYVALAQRKEERRARLQAQFSQMRPMVMPPS 422
Query: 263 QADR-----------PHQLFADAPPPAPLPP 282
A R QLF PPPA + P
Sbjct: 423 VAPRMPMYPPGVPGVGQQLFYGQPPPAFVNP 453
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 49/236 (20%)
Query: 20 SQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYG 79
S+ + E GG + A++YVG L+ V+E ++E+F G V ++ + +D VT+ GY
Sbjct: 49 SEEQGELGG-VAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSLGYA 107
Query: 80 FIEFMGEEDADYAIKIMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEK 136
++ + ED + AI +N + G+P R+ + S +++ D NIFI NL P +D K
Sbjct: 108 YVNYHKFEDGEKAIDELNYSLVEGRPCRIMWSQRDPSARRSGD--GNIFIKNLHPAIDNK 165
Query: 137 LLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196
L+DTFSAFG IL ++ D
Sbjct: 166 ALHDTFSAFGRILSC---------------------------------------KVATD- 185
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
D G SK F F++Y + EA++A+I+ ++G L +R + V K SK DR E
Sbjct: 186 DMGQSKCFGFVHYETGEAAEAAIENVNGMLLNDREVFVG---KHVSKKDRESKFEE 238
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 105/244 (43%), Gaps = 62/244 (25%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
IYV +D +E ELF G + ++++ KD+ ++ +G+GF+ + + A A++
Sbjct: 244 TNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQDGKS-KGFGFVNYEEHKSAVDAVE 302
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLD-----------------VGANIFIGNLDPEVDEKL 137
+N ++ G+ I V +A ++ + G N+FI NLD ++D +
Sbjct: 303 ALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFIKNLDDQIDSEK 362
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + F FG I ++M D D
Sbjct: 363 LEEEFKPFGTITSA---------------------------------------KVMVD-D 382
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAA 257
G SKGF F+ +++ E + +I M+ + + +P+ V+ A +KD + S E+ + A
Sbjct: 383 AGKSKGFGFVCFSTPEEATKAITEMNQRMINGKPLYVALAQRKDVR----RSQLEQQIQA 438
Query: 258 QNPL 261
+N +
Sbjct: 439 RNQM 442
>gi|403221305|dbj|BAM39438.1| polyadenylate-binding protein [Theileria orientalis strain
Shintoku]
Length = 656
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 119/241 (49%), Gaps = 17/241 (7%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E+F GPV ++ + +D VT+ GY ++ + +DA+ A++
Sbjct: 27 ASLYVGDLQPDVTEAVLYEVFNTIGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEAALE 86
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N I++ G P R+ ++ GA NIF+ NLD +D K LYDTF+ FG IL
Sbjct: 87 NLNYIEIKGHPTRIMWSNRDPSLRKSGAGNIFVKNLDKSIDTKSLYDTFAHFGTILSCKV 146
Query: 154 IMNMI---KLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI---MRDPDTGNSKGFAFI 207
++ + YG + S ++ ++ + IG E+ +R D + + +
Sbjct: 147 AVDSTGASRRYGF-VHYESEESAREAIEKVNGMLIGGKKVEVAPFLRKQDRETEEVYTNL 205
Query: 208 NYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR-------HGSAAERLLAAQNP 260
+F A D +A+ Q+L S K+DSKG R S A+ ++ N
Sbjct: 206 YVRNFPA-DWDEEALR-QFLEKYGEITSMMLKEDSKGRRFAFVNYKEASVAKEVVTTLND 263
Query: 261 L 261
L
Sbjct: 264 L 264
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+ +Y+ LDD + + ELF Q G + + + D +G+GF+ F ++A AI
Sbjct: 306 SNLYIKNLDDTFDDASLGELFKQFGTITSSKVMLD-ANNNSRGFGFVCFSNPQEATKAIA 364
Query: 95 IMNMIKLYGKPIRVNKASSHQKNL 118
M++ + GKP+ V A + L
Sbjct: 365 AMHLKLVKGKPLYVGLAEKRDQRL 388
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 42/209 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 55 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSAADGERALE 114
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 115 ELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKV 174
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ + GNSKG+ F++Y + +
Sbjct: 175 AVD----------------------------------------EHGNSKGYGFVHYETSD 194
Query: 214 ASDASIDAMHGQYLCNRPISVSYAF-KKD 241
A++ +I +++G L + + V + KKD
Sbjct: 195 AANQAIKSVNGMLLNEKKVFVGHHIPKKD 223
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 124/287 (43%), Gaps = 36/287 (12%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV +D + ++ ELF + G + + + D + +G+GF+ F+ EDA A+ +
Sbjct: 238 IYVKNIDAETTDDEFRELFEKYGQITSASLAHDDQGKV-RGFGFVNFIRHEDAAKAVDEL 296
Query: 97 NMIKLYGKPIRVNKAS-SHQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N + G+ + V +A H++ ++ G N+++ NL E+D++ L
Sbjct: 297 NDLDFKGQKLYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDEELR 356
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVG---ANIFIGNLDPEIMRDP 196
F +G I + K+M K K +K + + E+ +
Sbjct: 357 KIFEPYGAIT-SAKVMRDTTPLDKVEGAEKEDGEKKESESSAEDKEEEKKDDADELAKKL 415
Query: 197 DT----------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
DT G SKGF F+ +++ + + ++ ++ + + ++P+ V+ A +K+ + +
Sbjct: 416 DTVTIGGEKKVLGKSKGFGFVCFSNPDEATKAVTELNQKMIHSKPLYVALAQRKEVRKSQ 475
Query: 247 HGSA--AERLLAAQNPLSQADRPHQLFADAPPPAPLPPPPPPINIMG 291
++ A + Q + P Q APP + P P+ I G
Sbjct: 476 LEASIQARNQVRMQQQATAGGLPQQFM--APPQMFIGPNGQPMMIPG 520
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/221 (18%), Positives = 83/221 (37%), Gaps = 54/221 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + + + F G +++ + D + +GYGF+ + + A+ A
Sbjct: 141 GQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAVDEHGNS-KGYGFVHYETSDAANQA 199
Query: 93 IKIMNMIKLYGKPI----------RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTF 142
IK +N + L K + R++K + N NI++ N+D E + + F
Sbjct: 200 IKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANF---TNIYVKNIDAETTDDEFRELF 256
Query: 143 SAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSK 202
+G I + + +H D G +
Sbjct: 257 EKYGQI------------------TSASLAHD----------------------DQGKVR 276
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
GF F+N+ E + ++D ++ + + V A KK +
Sbjct: 277 GFGFVNFIRHEDAAKAVDELNDLDFKGQKLYVGRAQKKHER 317
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 122/263 (46%), Gaps = 56/263 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG L+ V+++ +++LF Q G VV+V + +D T+ GYG++ F +DA A+
Sbjct: 32 TSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALD 91
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
++N + K IRV + + G ANIFI NLD +D K L+DTFS+FG I+ K
Sbjct: 92 VLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSC-K 150
Query: 154 I----------------------------MNMIKLYGKPIRVNKASSHQKNLDVGA---- 181
I +N + + K + V Q +V +
Sbjct: 151 IATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKF 210
Query: 182 -NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASID 220
N+++ NL +MRD D G SK F F+N+ + E + +++
Sbjct: 211 NNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDAD-GRSKCFGFVNFENAEDAAKAVE 269
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
A++G+ + ++ V A KK +
Sbjct: 270 ALNGKKVDDKEWYVGKAQKKSER 292
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 128/324 (39%), Gaps = 83/324 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + + + F G +++ + D Q+ +GYGF++F E+ A A
Sbjct: 118 GTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQS-KGYGFVQFEAEDSAQNA 176
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA-----NIFIGNLDPEVDEKLLYDTFSAFGV 147
I +N + + K + V Q +V + N+++ NL E L + F A+G
Sbjct: 177 IDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGT 236
Query: 148 ILQT---------PKIMNMIK-------------LYGKPI--------RVNKASSHQKNL 177
I K + L GK + + K S ++ L
Sbjct: 237 ITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQEL 296
Query: 178 D---------------VGANIFIGNLDP--------------------EIMRDPDTGNSK 202
G N+++ NLD +IMRDP+ G S+
Sbjct: 297 KGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPN-GVSR 355
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLS 262
G F+ +++ E + ++ M+G+ + ++P+ V+ A +K+ + R L AQ S
Sbjct: 356 GSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRAR--------LQAQ--FS 405
Query: 263 QADRPHQLFADAPPPAPLPPPPPP 286
Q RP + P PL PP P
Sbjct: 406 QM-RPVAITPSVAPRMPLYPPGTP 428
>gi|147797981|emb|CAN65009.1| hypothetical protein VITISV_027348 [Vitis vinifera]
Length = 420
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 106/231 (45%), Gaps = 46/231 (19%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG + +VSE L+ E+F +GPV + V + YGFI + A AI
Sbjct: 54 SVYVGNIHTQVSEPLLQEVFASTGPVEGCKL----VRKEKSSYGFIHYFDRRSAALAILS 109
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N L+G+PI+VN A + + D NIF+G+L PEV + L+ FS
Sbjct: 110 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFS---------- 159
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+F D +M D TG S+GF F+++ + +
Sbjct: 160 -----------------------------VFPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 190
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFK-KDSKGDRHGSAAERLLAAQNPLSQ 263
+ ++I+ + G++L +R I ++A K S D+ S A+ ++ N S+
Sbjct: 191 VAQSAINDITGKWLGSRQIRCNWATKGAGSNDDKQSSDAKSVVELTNGSSE 241
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 110/234 (47%), Gaps = 45/234 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+++YVG LD V+E + ELF Q VV++ + +D+ + GY ++ F +DA A++
Sbjct: 35 SSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAME 94
Query: 95 IMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
+N + GKPIR+ N+ S +K+ AN+FI NLD +D K L DTF+AFG +L
Sbjct: 95 HLNFTPVNGKPIRIMISNRDPSIRKS--GYANVFIKNLDLSIDNKALRDTFAAFGTVLSC 152
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
+ V +N G SKG+ F+ + S
Sbjct: 153 ------------------------KVAVDSN----------------GQSKGYGFVQFES 172
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQAD 265
E+++ SI+ ++G L ++ + V + + + +GS + P + D
Sbjct: 173 EESAEISIEKLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTD 226
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/349 (20%), Positives = 133/349 (38%), Gaps = 84/349 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A +++ LD + + + F G V++ + D Q+ +GYGF++F EE A+ +
Sbjct: 121 GYANVFIKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQS-KGYGFVQFESEESAEIS 179
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG----ANIFIGNLDPEVDEKLLYDTFSAFGVI 148
I+ +N + L K + V HQ+ + N+++ NL + L + F+ G I
Sbjct: 180 IEKLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTI 239
Query: 149 LQT---------PKIMNMI-------------KLYGKPI---------RVNKASSHQKNL 177
K + KL G + R + + + L
Sbjct: 240 TSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAEL 299
Query: 178 DV--------------GANIFIGNLD--------PEIMRDPDT-----------GNSKGF 204
GAN++I NLD E+ + T G SKG
Sbjct: 300 RAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGS 359
Query: 205 AFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ------ 258
F+ ++S + + +++ M+G+ +P+ V+ A +K+ + R + ++ AA
Sbjct: 360 GFVAFSSPDEATKALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAGGISSLP 419
Query: 259 ------NPLSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPPSGLR 301
+P + P Q++ P PP P G P SG+R
Sbjct: 420 SGIPGFHPGAARVSPQQMYYGQGNPGLAPPQPAGY---GFQPQLMSGMR 465
>gi|354466116|ref|XP_003495521.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
gi|344243583|gb|EGV99686.1| Polyadenylate-binding protein 4-like [Cricetulus griseus]
Length = 370
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 131/262 (50%), Gaps = 59/262 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L + V+E +++ F GPV+++ + +D V++ GY ++ F+ +DA A+
Sbjct: 10 ASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLDDAQKALD 69
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K LY+ FS FG IL +
Sbjct: 70 TMNFDLIQGKSIRLMWSQRDAYLRKSGIG-NVFIKNLDKSIDNKTLYEHFSPFGKIL-SS 127
Query: 153 KIMN----------------------MIKLYGKPIR-----VNKASSHQ----------- 174
K+M+ + ++ GK +R V++ S +
Sbjct: 128 KVMSDEEGSRGYGFVHYQDQSAADRAIEEMNGKLLRDCTVFVDRFKSRKDREAELRSKTS 187
Query: 175 -------KNL-----DVG-ANIFIG---NLDPEIMRDPDTGNSKGFAFINYASFEASDAS 218
KNL D G NIF L ++M+D D G SKGF F+++ + EA+ +
Sbjct: 188 EFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKD-DNGKSKGFGFVSFYNHEAARNA 246
Query: 219 IDAMHGQYLCNRPISVSYAFKK 240
++ M+GQ + + I V A KK
Sbjct: 247 VEEMNGQDINGQTIFVGRAQKK 268
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 19/138 (13%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+Y+ L D + + + +F + G ++V + KD ++ +G+GF+ F E A A++
Sbjct: 190 TNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKS-KGFGFVSFYNHEAARNAVE 248
Query: 95 IMNMIKLYGKPI---RVNKASSHQKNLD--------------VGANIFIGNLDPEVDEKL 137
MN + G+ I R K Q L A ++I NLD +D++
Sbjct: 249 EMNGQDINGQTIFVGRAQKKVERQAELKEKFEQMKKERIRARQAAKLYIKNLDETIDDET 308
Query: 138 LYDTFSAFGVILQTPKIM 155
L FS+FG I + K+M
Sbjct: 309 LRREFSSFGSICRV-KVM 325
>gi|449486336|ref|XP_004177123.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Taeniopygia guttata]
Length = 167
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 44/200 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 10 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 69
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 70 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG-NVFIKNLDDSIDNKALYDTFSAFGNILSCK 128
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
+ D S+G+ F+++ +
Sbjct: 129 VVC-----------------------------------------DENGSRGYGFVHFETH 147
Query: 213 EASDASIDAMHGQYLCNRPI 232
EA+ +I+ M+G L +R +
Sbjct: 148 EAATRAIETMNGMLLNDRKV 167
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 116/262 (44%), Gaps = 54/262 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG LD V++ +++LF Q G VV+V + +D ++ GYG++ F +DA A+
Sbjct: 31 TSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALD 90
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
++N L +PIR+ + G NIFI NLD +D K L+DTFS FG IL
Sbjct: 91 VLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKV 150
Query: 153 -------------------------------KIMNMIKLYGKPIRVNKASSHQKNLDVGA 181
++N ++Y P + +
Sbjct: 151 ATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAADKAKFN 210
Query: 182 NIFIGNL-----DPE---------------IMRDPDTGNSKGFAFINYASFEASDASIDA 221
N+F+ NL D E +MRD D G SK F F+N+ + + + +++A
Sbjct: 211 NVFVKNLSESTTDDELKNTFGEFGTITSAVVMRDGD-GKSKCFGFVNFENADDAARAVEA 269
Query: 222 MHGQYLCNRPISVSYAFKKDSK 243
++G+ ++ V A KK +
Sbjct: 270 LNGKNFDDKEWYVGKAQKKSER 291
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 125/332 (37%), Gaps = 82/332 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + + F G +++ + D Q+ +GYGF++F EE A A
Sbjct: 117 GQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQS-KGYGFVQFDNEESAQKA 175
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG-----ANIFIGNLDPEVDEKLLYDTFSAFGV 147
I+ +N + L K + V Q+ N+F+ NL + L +TF FG
Sbjct: 176 IEKLNGMLLNDKQVYVGPFLRKQERESAADKAKFNNVFVKNLSESTTDDELKNTFGEFGT 235
Query: 148 ILQT---------PKIMNMIK-------------LYGKPI--------RVNKASSHQKNL 177
I K + L GK + K S + L
Sbjct: 236 ITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKNFDDKEWYVGKAQKKSERENEL 295
Query: 178 D--------------VGANIFIGNLDPEI--------------------MRDPDTGNSKG 203
GAN+++ NLD I MRDP+ G S+G
Sbjct: 296 KQRFEQSMKEAADKYQGANLYVKNLDDSIGDEKLKELFSPFGTITSCKVMRDPN-GLSRG 354
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F+ +++ E + ++ M+G+ + ++P+ V+ A +K+ + R + ++ P S
Sbjct: 355 SGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMPPSV 414
Query: 264 ADRP-----------HQLFADAPPPAPLPPPP 284
R QLF PPA +P P
Sbjct: 415 GPRVPMYPPGGPGIGQQLFYSQGPPAIIPSQP 446
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 123/268 (45%), Gaps = 64/268 (23%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +G V+++ + +D VT+ GY ++ F A+ A+
Sbjct: 13 ASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHAEKALD 72
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT- 151
MN + G+P R+ + + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 73 TMNFDPIKGRPCRIMWQQRDPSLRKSGVG-NIFIKNLDKSIDNKSLYDTFSAFGNILSCK 131
Query: 152 --------PK-----------------------IMNMIKLY-----GKPIRVNKASSHQK 175
PK ++N K++ K R+ K + K
Sbjct: 132 IAQDELGNPKGYGFVHFETEDAALEAIARVDGMLLNDKKVFVGRWMSKKERIEKMGTQPK 191
Query: 176 NLDVGANIFIGN----LDPE----------------IMRDPDTGNSKGFAFINYASFEAS 215
N+++ N +D E +M DP+ G SKGF F+++ + E +
Sbjct: 192 KF---TNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPE-GKSKGFGFVSFETPEEA 247
Query: 216 DASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ +++ ++G+ + R + A K+ +
Sbjct: 248 EEAVNVLNGKEIGGRRLWAGRAKKRAER 275
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 106/240 (44%), Gaps = 58/240 (24%)
Query: 21 QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGF 80
+ ++E G +YV D + + M E+ ++G +V++ + D ++ +G+GF
Sbjct: 180 KERIEKMGTQPKKFTNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKS-KGFGF 238
Query: 81 IEFMGEEDADYAIKIMNMIKLYGKPI-----------------RVNKASSHQKNLDVGAN 123
+ F E+A+ A+ ++N ++ G+ + + K + N G N
Sbjct: 239 VSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGVN 298
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
++I NLD +D++ L + FS +G I
Sbjct: 299 LYIKNLDDPIDDERLREEFSPYGTISSA-------------------------------- 326
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++M+D D GNSKGF F+ ++S E + ++ M+G+ L ++P+ V+ A +++ +
Sbjct: 327 -------KVMKD-DKGNSKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVALAQRREER 378
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 109/221 (49%), Gaps = 45/221 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L+++ F GPV+++ + +D VT+ GY ++ F+ DA A+
Sbjct: 10 ASLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ + + +G N+FI NLD +D K LY+ FSAFG IL +
Sbjct: 70 TMNFDMIKGKSIRLMWSQRDACLRKSGIG-NVFIKNLDRSIDNKTLYEHFSAFGKIL-SS 127
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
K+M D SKG+AF+++ +
Sbjct: 128 KVM----------------------------------------SDDQGSKGYAFVHFQNQ 147
Query: 213 EASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
A+D +I+ M+G+ L + + V + +KD + + A+E
Sbjct: 148 SAADRAIEEMNGKLLKDCKVFVGRFKNRKDREAELRNKASE 188
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 59/222 (26%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+Y+ D + + + E+F + G ++V + D ++ +G+GF+ F E A A++
Sbjct: 190 TNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKS-KGFGFVSFDNHEAAQKAVE 248
Query: 95 IMNMIKLYGKPIRVNKAS-------------SHQKNLDV----GANIFIGNLDPEVDEKL 137
MN + G+ I V +A QK + G ++I NLD +D++
Sbjct: 249 EMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQKRERIRKCQGVKLYIKNLDDTIDDEK 308
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L FS+FG I + K+M +
Sbjct: 309 LRKEFSSFGSISRV-KVM----------------------------------------QE 327
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239
G SKGF I ++S E + ++ M+GQ L ++P++++ + K
Sbjct: 328 EGQSKGFGLICFSSPEEATKAMTEMNGQILGSKPLNIALSQK 369
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 110/234 (47%), Gaps = 45/234 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+++YVG LD V+E + ELF Q VV++ + +D+ + GY ++ F +DA A++
Sbjct: 35 SSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAME 94
Query: 95 IMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
+N + GKPIR+ N+ S +K+ AN+FI NLD +D K L DTF+AFG +L
Sbjct: 95 HLNFTPVNGKPIRIMISNRDPSIRKS--GYANVFIKNLDLSIDNKALRDTFAAFGTVLSC 152
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
+ V +N G SKG+ F+ + S
Sbjct: 153 ------------------------KVAVDSN----------------GQSKGYGFVQFES 172
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQAD 265
E+++ SI+ ++G L ++ + V + + + +GS + P + D
Sbjct: 173 EESAEISIEKLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTD 226
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/349 (20%), Positives = 133/349 (38%), Gaps = 84/349 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A +++ LD + + + F G V++ + D Q+ +GYGF++F EE A+ +
Sbjct: 121 GYANVFIKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQS-KGYGFVQFESEESAEIS 179
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG----ANIFIGNLDPEVDEKLLYDTFSAFGVI 148
I+ +N + L K + V HQ+ + N+++ NL + L + F+ G I
Sbjct: 180 IEKLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTI 239
Query: 149 LQT---------PKIMNMI-------------KLYGKPI---------RVNKASSHQKNL 177
K + KL G + R + + + L
Sbjct: 240 TSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAEL 299
Query: 178 DV--------------GANIFIGNLD--------PEIMRDPDT-----------GNSKGF 204
GAN++I NLD E+ + T G SKG
Sbjct: 300 KAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGS 359
Query: 205 AFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQ------ 258
F+ ++S + + +++ M+G+ +P+ V+ A +K+ + R + ++ AA
Sbjct: 360 GFVAFSSPDEATKALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAGGISSLP 419
Query: 259 ------NPLSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPPSGLR 301
+P + P Q++ P PP P G P SG+R
Sbjct: 420 SGIPGFHPGAARVSPQQMYYGQGNPGLAPPQPAGY---GFQPQLMSGMR 465
>gi|390604168|gb|EIN13559.1| hypothetical protein PUNSTDRAFT_117298 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 425
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 107/211 (50%), Gaps = 45/211 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG--YGFIEFMGEEDADYA 92
A +YVG L +V+E ++ E+F +GPV +V + DR Q H G YGF+E++ A+ A
Sbjct: 17 AHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQ-HGGLNYGFVEYIDMRAAETA 75
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGAN---IFIGNLDPEVDEKLLYDTFSAFGVIL 149
++ +N K++ IRVN A +N + +N +F+G+L PEV++++L FSAFG +
Sbjct: 76 LQTLNGRKIFDTEIRVNWAYQGNQNKEDTSNHYHVFVGDLSPEVNDEVLQKAFSAFGSL- 134
Query: 150 QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINY 209
D +M D ++G S+G+ F+ +
Sbjct: 135 --------------------------------------SDARVMWDMNSGKSRGYGFLAF 156
Query: 210 ASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
++ +I M+G++L +R I V++A +K
Sbjct: 157 RDKTDAEQAIATMNGEWLGSRAIRVNWANQK 187
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 104/218 (47%), Gaps = 45/218 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG LD V + ++++F Q G VV+V + +D ++ GY ++ + DA A++
Sbjct: 32 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 91
Query: 95 IMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
++N + G+PIR+ N+ S +K+ ANIFI NLD +D K LYDTF FG IL
Sbjct: 92 MLNFTPINGRPIRIMYSNRDPSLRKSGT--ANIFIKNLDKSIDNKALYDTFCVFGNILSC 149
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
++ DP G SKG+ F+ Y
Sbjct: 150 ---------------------------------------KVATDP-AGESKGYGFVQYER 169
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
EA+ A+I+ ++G + ++ + V +K + + G+
Sbjct: 170 DEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGN 207
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 79/376 (21%), Positives = 144/376 (38%), Gaps = 109/376 (28%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + +++ F G +++ + D ++ +GYGF+++ +E A A
Sbjct: 118 GTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATDPAGES-KGYGFVQYERDEAAHAA 176
Query: 93 IK-----IMNMIKLYGKP-IRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFG 146
I+ +MN K+Y P +R + + N+ N+++ NL E L + F FG
Sbjct: 177 IEKLNGMLMNDKKVYVGPFVRKQERDNSPGNVKFN-NVYVKNLAETTTEDDLKEIFGKFG 235
Query: 147 VI--------------------LQTP-------KIMNMIKLYGKPIRVNKASSH------ 173
I ++P + +N K K V +A
Sbjct: 236 AITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREIE 295
Query: 174 -----QKNLDVGA------NIFIGNLDP--------------------EIMRDPDTGNSK 202
+KNL A N+++ NLD ++MRD + G S+
Sbjct: 296 LKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSN-GASR 354
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLS 262
G F+ + S + + ++ M+ + + N+P+ V+ A +K+ + R + ++ P++
Sbjct: 355 GSGFVAFKSADDASRALAEMNNKMVGNKPLYVALAQRKEDRKARLQAQFSQMRPV--PMA 412
Query: 263 QADRP------------HQLFADAPPP----------------------APLPPPPPPIN 288
Q P Q+F PP AP+P P+
Sbjct: 413 QTVGPRMQMLPPGVPVGQQMFYGQPPAFINPQPGFGFQQPFMPGMRPGGAPMPNFMMPMV 472
Query: 289 IMGLPPPPPSGLRASA 304
G P P+G RA A
Sbjct: 473 QQGQQPQRPAGRRAGA 488
>gi|254576977|ref|XP_002494475.1| ZYRO0A02398p [Zygosaccharomyces rouxii]
gi|238937364|emb|CAR25542.1| ZYRO0A02398p [Zygosaccharomyces rouxii]
Length = 410
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 124/291 (42%), Gaps = 69/291 (23%)
Query: 25 EGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFM 84
+GG E+ D +YVG LD ++E ++ + F G + NV + D+ Y F+E+
Sbjct: 48 KGGRETSD--RVLYVGNLDKSITEEVLRQYFQVGGQISNVKVMIDK-NNARANYAFVEYF 104
Query: 85 GEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNL--DVGANIFIGNLDPEVDEKLLYDTF 142
DA+ A++ +N ++ +R+N A Q+ L + N+F+G+L +VD++ L + F
Sbjct: 105 KSHDANIALQTLNGKQIENNVVRINWAFQSQQALPDENTYNLFVGDLSVDVDDETLCNAF 164
Query: 143 SAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSK 202
+F +Q +M D TG S+
Sbjct: 165 RSFPSFIQG---------------------------------------HVMWDMQTGGSR 185
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS--KGDRHGSAA------ERL 254
G+ F+++ E + ++D+M Q L RP+ +++A K+++ G+R G A RL
Sbjct: 186 GYGFVSFGDQEQAQLAMDSMQSQELNGRPLRINWASKRENHHNGNRRGGLAGNRNGGMRL 245
Query: 255 LAAQN-----------------PLSQADRPHQLFADAPPPAPLPPPPPPIN 288
N PL P+ APP P P PPP+N
Sbjct: 246 FPNNNNGFGRGMPMPPPNSMGIPLGGTLPPNAQPMGAPPSGPAPTVPPPVN 296
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 128/282 (45%), Gaps = 63/282 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+++YVG L + V ET + +F Q P+V+V + +D V+ GYG++ F ++A A++
Sbjct: 37 SSLYVGDLAESVDETQLHAVFSQVAPLVSVRVCRDIVSGVSLGYGYVNFYSRQEATCALE 96
Query: 95 IMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
+N L GK IRV N+ S +K+ AN+F+ NL+P +D K LY+ FS+FG IL
Sbjct: 97 ALNFAPLSGKHIRVMFSNRDPSLRKSGR--ANLFVKNLEPSIDSKNLYEMFSSFGTILSC 154
Query: 152 PKIMN---MIKLYG------------KPIRVNKASSHQKNLDVG------------ANIF 184
+ K YG R+N ++ + + VG N++
Sbjct: 155 KVATDSAGQSKGYGFVQYETEESAQDAINRLNGMLANDREMFVGLHMRRRNREVKFTNVY 214
Query: 185 IGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASIDAMHG 224
I NL E +MRD + G SK F F+N+ E + ++ +G
Sbjct: 215 IKNLPTEFSDDDLRQEFAPFGEITSAVVMRDVN-GVSKCFGFVNFEKPEFALEAVKKANG 273
Query: 225 QYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADR 266
+ + ++ + V A KK AER + Q DR
Sbjct: 274 KVINDKTLYVGRAQKK----------AERQAELKTKFKQEDR 305
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 131/318 (41%), Gaps = 74/318 (23%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A ++V L+ + ++E+F G +++ + D Q+ +GYGF+++ EE A A
Sbjct: 123 GRANLFVKNLEPSIDSKNLYEMFSSFGTILSCKVATDSAGQS-KGYGFVQYETEESAQDA 181
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVI--- 148
I +N + + + V ++N +V N++I NL E + L F+ FG I
Sbjct: 182 INRLNGMLANDREMFVG-LHMRRRNREVKFTNVYIKNLPTEFSDDDLRQEFAPFGEITSA 240
Query: 149 -----------------LQTPK--IMNMIKLYGKPI--------RVNKASSHQKNLDV-- 179
+ P+ + + K GK I R K + Q L
Sbjct: 241 VVMRDVNGVSKCFGFVNFEKPEFALEAVKKANGKVINDKTLYVGRAQKKAERQAELKTKF 300
Query: 180 -------------GANIFIGNLDPEI--------------------MRDPDTGNSKGFAF 206
G N+++ N+D I M D G SKG F
Sbjct: 301 KQEDRDKKVDKPNGINLYLKNIDDSINDEGLKILFEEFGQVTSCKVMVDAQ-GRSKGSGF 359
Query: 207 INYASFEASDASIDAMHGQYLCNRPISVSYAF-KKDSKGDRHGSAAERLLA-AQNPLSQA 264
+ +A+ EA ++I+ M+G+ + +P+ V A K++ + A+R LA A +P +
Sbjct: 360 VLFATAEAGHSAINGMNGRIVGKKPLYVGLAQPKEERRAMLMAHFAQRNLAMAASPYAG- 418
Query: 265 DRPHQLFADAPPPAPLPP 282
P Q++ P P +PP
Sbjct: 419 --PQQVYFGHPAPGQIPP 434
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 43/202 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E+ +++ F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + KPIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVG-NVFIKNLDRAIDNKAIYDTFSAFGNILSC- 119
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
K ++ +K GNSKG+ F+++ +
Sbjct: 120 ----------------KVATDEK-----------------------GNSKGYGFVHFETE 140
Query: 213 EASDASIDAMHGQYLCNRPISV 234
EA++ SID ++G L + + V
Sbjct: 141 EAANTSIDKVNGMLLNGKKVYV 162
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/284 (20%), Positives = 116/284 (40%), Gaps = 76/284 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D + +GYGF+ F EE A+ +
Sbjct: 88 GVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNS-KGYGFVHFETEEAANTS 146
Query: 93 IKIMNMIKLYGKPIRVNK---ASSHQKNLDVGA----NIFIGNLDPEVDEKLLYDTFSAF 145
I +N + L GK + V K +K L A N+++ N + D++ L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 146 GVILQTPKIMN-----------------------MIKLYGKPI---------RVNKASSH 173
G I + K+M+ + L GK + R K +
Sbjct: 207 GKI-TSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAER 265
Query: 174 QKNLD--------------VGANIFIGNLD--------------------PEIMRDPDTG 199
Q+ L G N+++ NLD ++M D + G
Sbjct: 266 QQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-G 324
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ + + + ++ ++G+ + ++P+ V+ A +K+ +
Sbjct: 325 RSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEER 368
>gi|401409876|ref|XP_003884386.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
gi|325118804|emb|CBZ54355.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
Length = 763
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 101/202 (50%), Gaps = 45/202 (22%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG L V+E +++E+F GPV ++ + +D VT+ GY ++ + G +DA+ ++
Sbjct: 85 SLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDT 144
Query: 96 MNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+N + G+P R+ ++ S +K+ + NIF+ NLD +D K LYDTFS FG IL
Sbjct: 145 LNYTVIKGQPCRIMWCHRDPSLRKSGN--GNIFVKNLDKNIDNKALYDTFSLFGNILSCK 202
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ + G+SKG+ F++Y +
Sbjct: 203 VAVD----------------------------------------ENGHSKGYGFVHYENE 222
Query: 213 EASDASIDAMHGQYLCNRPISV 234
E++ ++ID ++G + + + V
Sbjct: 223 ESARSAIDKVNGMLIGGKTVYV 244
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 104/249 (41%), Gaps = 54/249 (21%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G+ I+V LD + +++ F G +++ + D + +GYGF+ + EE A A
Sbjct: 170 GNGNIFVKNLDKNIDNKALYDTFSLFGNILSCKVAVDENGHS-KGYGFVHYENEESARSA 228
Query: 93 IKIMNMIKLYGKPIRV----NKASSHQKNLDVGANIFIGNL-DPEVDEKLLYDTFSAFGV 147
I +N + + GK + V +A N++I N+ DE L +TF+ +G
Sbjct: 229 IDKVNGMLIGGKTVYVGPFIRRAERDNLAETKYTNVYIKNMPSAWEDEARLRETFAKYG- 287
Query: 148 ILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFI 207
I +++ + +DP + FAF
Sbjct: 288 -----SITSLV---------------------------------VRKDP---KGRLFAFC 306
Query: 208 NYASFEASDASIDAMHGQYLCN----RPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
N+A +++ A+++A++G+ + + + S A +KD +G + E++L S+
Sbjct: 307 NFADHDSAKAAVEALNGKRVTDAGAIKEGEDSGAEEKDEEGQKR--EGEQILFVGPHQSK 364
Query: 264 ADRPHQLFA 272
A R L A
Sbjct: 365 AHRSAMLRA 373
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ +DD + + + +LF G + + + +D + +GF+ FM E+A A+ M
Sbjct: 391 LYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDE-RGVSRCFGFVCFMSPEEATKAVTEM 449
Query: 97 NMIKLYGKPIRVNKASSHQKNL 118
++ + GKP+ V A ++ L
Sbjct: 450 HLKLVKGKPLYVGLAERREQRL 471
>gi|413954516|gb|AFW87165.1| hypothetical protein ZEAMMB73_979278 [Zea mays]
gi|414865260|tpg|DAA43817.1| TPA: hypothetical protein ZEAMMB73_808082 [Zea mays]
Length = 643
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 45/212 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L + V E + LF Q PV V + +D ++ GYG++ F ++A A++
Sbjct: 35 ASLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALE 94
Query: 95 IMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
+N L GK IRV N+ S +K+ AN+F+ NL+P +D K LY+ FS+FG IL
Sbjct: 95 ALNFTPLIGKYIRVMFSNRDPSLRKSGR--ANLFVKNLEPNIDSKNLYEIFSSFGAILSC 152
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
++ D G SKG+ F+ Y +
Sbjct: 153 ---------------------------------------KVATD-SAGQSKGYGFVQYET 172
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
E+++A+I+ ++G NR + V ++ +
Sbjct: 173 EESAEAAINGLNGMLANNRKMFVGLHMRRRDR 204
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 130/326 (39%), Gaps = 70/326 (21%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A ++V L+ + ++E+F G +++ + D Q+ +GYGF+++ EE A+ A
Sbjct: 121 GRANLFVKNLEPNIDSKNLYEIFSSFGAILSCKVATDSAGQS-KGYGFVQYETEESAEAA 179
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI---- 148
I +N + + + V + N++I NL E E L F+ FG I
Sbjct: 180 INGLNGMLANNRKMFVGLHMRRRDREVKFTNVYIKNLPTEFSEDDLRQEFAPFGEITSAV 239
Query: 149 ----------------LQTPK--IMNMIKLYGKPI--------RVNKASSHQKNLDV--- 179
+ P+ I + K GK I R K + L
Sbjct: 240 VMRDADGASKCFGFVNFKKPEFAIEAVEKANGKAIGDKTLYVGRAQKKEERKAELKTRFG 299
Query: 180 -----------GANIFIGNLD--------------------PEIMRDPDTGNSKGFAFIN 208
G N+++ N+D ++M D G SKG F++
Sbjct: 300 RGRDNKVDKPNGINLYLKNIDDGINDEGLKKLFEEFGQVASCKVMVDA-RGRSKGSGFVS 358
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAF-KKDSKGDRHGSAAERLLAAQNPLSQADRP 267
+A+ EA +I+ M+G+ + +P+ V A K++ K A+R LA SQ P
Sbjct: 359 FATAEAGQRAINRMNGRIVGKKPLYVGLAQPKEERKAMLMAHFAQRNLAMA--ASQYAGP 416
Query: 268 HQLFADAPPPAPLPPPPPPINIMGLP 293
Q++ P +P P PP + G P
Sbjct: 417 QQVYF-GHPSSPGPIAPPQGAVFGFP 441
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 99/211 (46%), Gaps = 43/211 (20%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++Y G LD +E ++ELF GPVV++ + +D +T+ GY ++ F DA AI
Sbjct: 33 SLYCGDLDPSCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGNDAARAIDA 92
Query: 96 MNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + GKPIR+ ++ + VG NIFI NLD E+D K LYDTF+ FG I+
Sbjct: 93 LNFQVVNGKPIRIMYSQRDPALRKSGVG-NIFIKNLDKEIDNKALYDTFAQFGNIVSAKV 151
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ G SKG+ F+ + + E
Sbjct: 152 ATDL----------------------------------------QGQSKGYGFVQFDTEE 171
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
+ ++I+ ++G L ++ + V K++ +G
Sbjct: 172 GAQSAIEKVNGMLLNDKQVYVGPFQKRNERG 202
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 136/338 (40%), Gaps = 84/338 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD ++ +++ F Q G +V+ + D Q+ +GYGF++F EE A A
Sbjct: 118 GVGNIFIKNLDKEIDNKALYDTFAQFGNIVSAKVATDLQGQS-KGYGFVQFDTEEGAQSA 176
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAFG 146
I+ +N + L K + V QK + G N+++ NL V E+ L + F FG
Sbjct: 177 IEKVNGMLLNDKQVYV---GPFQKRNERGGGPTTFNNVYVKNLHESVTEEKLREVFEKFG 233
Query: 147 VILQTPKIMNM--------------IKLYGKPI-----------------RVNKASSHQK 175
+ + + + GK + R K S +
Sbjct: 234 ALTSVVVMKDAEGKSKGFGFVCYEDAEAAGKSVEELDGYDKIEDKAWVVCRAQKKSEREA 293
Query: 176 NLD--------------VGANIFIGNLD--------------------PEIMRDPDTGNS 201
L GAN++I NL+ +MRD G S
Sbjct: 294 ELKAKFDAERRERMEKMAGANLYIKNLEDTVDDAKLRELFAEFGTITSCRVMRDT-AGAS 352
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR-HGSAAERLLAAQNP 260
+G AF+ ++S + + ++ M+G+ +P+ V+ A +K+ + R A+R +AA
Sbjct: 353 RGSAFVAFSSADEATRAVTEMNGKMAGQKPLYVALAQRKEDRRLRLQAQFAQRQVAA--- 409
Query: 261 LSQADRPHQLFADAPPP-APLPPPPPPINIMGLPPPPP 297
P+ PPP AP+ PP +MG P P P
Sbjct: 410 ---GGMPNMGPYGMPPPGAPMYYGQPPPGVMGPPQPQP 444
>gi|388582290|gb|EIM22595.1| polyadenylate binding protein [Wallemia sebi CBS 633.66]
Length = 637
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 54/263 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ +D + A++
Sbjct: 38 ASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNLQDGERALE 97
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + + R+ + G NIFI NLD +D K L+DTF+AFG +L
Sbjct: 98 QLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKV 157
Query: 153 --------------------------KIMNMIKLYGKPIRVNKASS---HQKNLDVG--- 180
+ +N + L K + V S Q +D
Sbjct: 158 ATDENGNSRGYGFVHYENGESASAAIQHVNGMLLNDKKVYVGHHVSKKERQAKIDEQKSQ 217
Query: 181 -ANIFIGNLD-------------------PEIMRDPDTGNSKGFAFINYASFEASDASID 220
N+FI NLD +++ + GNS+GF F+NY + E + +++
Sbjct: 218 FTNVFIKNLDVSVDDEKFKQILEPYGEILSAVVQKDEQGNSRGFGFVNYKNHEEAAKAVE 277
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
+++ + + I + A KK+ +
Sbjct: 278 SLNEVEVDGKKIFAARAQKKNER 300
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 140/352 (39%), Gaps = 94/352 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD+ + + + F G V++ + D +GYGF+ + E A A
Sbjct: 124 GQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDE-NGNSRGYGFVHYENGESASAA 182
Query: 93 IKIMNMIKLYGKPIRVNKASS---HQKNLDVG----ANIFIGNLDPEVDEKLLYDTFSAF 145
I+ +N + L K + V S Q +D N+FI NLD VD++ +
Sbjct: 183 IQHVNGMLLNDKKVYVGHHVSKKERQAKIDEQKSQFTNVFIKNLDVSVDDEKFKQILEPY 242
Query: 146 GVIL---------------------------QTPKIMNMIKLYGKPI---RVNKASSHQK 175
G IL + + +N +++ GK I R K + ++
Sbjct: 243 GEILSAVVQKDEQGNSRGFGFVNYKNHEEAAKAVESLNEVEVDGKKIFAARAQKKNEREE 302
Query: 176 NLD--------------VGANIFIGNLD--------------------PEIMRDPDTGNS 201
L G N+++ NLD +IMRD + G S
Sbjct: 303 ELRRNYEQAKLEKLAKYAGVNLYVKNLDDDFDDERLVGEFEPFGTITSAKIMRD-EKGTS 361
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPL 261
KGF F+ ++S + + ++ + G+ + ++P+ VS A ++D + + E +A +N L
Sbjct: 362 KGFGFVCFSSPDEATKAVSELSGKMIGSKPLYVSLAQRRDVRRQQ----LESQIAQRNQL 417
Query: 262 SQADRPHQLFADAP-----PPAPLPPPPPP------INIMGLP---PPPPSG 299
HQ A P P AP+ PPP ++ G P PP P G
Sbjct: 418 RLQ---HQAAAGVPISGFMPGAPMYYQPPPGAYPGGRSMYGQPGFAPPRPRG 466
>gi|17567133|ref|NP_510260.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
gi|3876085|emb|CAA90444.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
Length = 692
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 97/201 (48%), Gaps = 41/201 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++Y+G L VSE +++E F +GPV+++ + +D ++ GY ++ F DA+ A+
Sbjct: 57 ASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALD 116
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
MN ++G+P+R+ + G NIFI NLD +D K +YDTFS FG IL
Sbjct: 117 TMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSC-- 174
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ D D GNSKG+ F+++ +
Sbjct: 175 -------------------------------------KVATD-DEGNSKGYGFVHFETEH 196
Query: 214 ASDASIDAMHGQYLCNRPISV 234
++ +I+ ++G L ++ + V
Sbjct: 197 SAQTAIEKVNGMLLSDKKVYV 217
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/300 (20%), Positives = 114/300 (38%), Gaps = 79/300 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G+ I++ LD + +++ F G +++ + D + +GYGF+ F E A A
Sbjct: 143 GNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNS-KGYGFVHFETEHSAQTA 201
Query: 93 IKIMNMIKLYGKPIRVNKASSH-QKNLDVG------ANIFIGNLDPEVDEKLLYDTFSAF 145
I+ +N + L K + V K Q+ ++G N+F+ N +D++ L FS F
Sbjct: 202 IEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKF 261
Query: 146 GVILQTPKIMNMIKLYGKP-----------------------------------IRVNKA 170
G I + M GKP R K
Sbjct: 262 GEITSA---VVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKK 318
Query: 171 SSHQKNLDV--------------GANIFIGNLDPEI----MRD---------------PD 197
S L G N+++ N++ ++ +RD +
Sbjct: 319 SERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDE 378
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAA 257
G SKGF F+ + E + A++ M+ + + +P+ V+ A +K+ + + S + LA
Sbjct: 379 NGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQRLAT 438
>gi|348582138|ref|XP_003476833.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Cavia porcellus]
Length = 482
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 124/265 (46%), Gaps = 59/265 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L +E L++ F +GPV+++ + +D T+ GY ++ F+ DA A+
Sbjct: 122 ASLYVGDLHADATEDLLFRKFSXAGPVLSIRICRDVATRRPLGYAYVNFLRPADAQKALD 181
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + + VG N+ I NLD VD K LY+ FS FG IL +
Sbjct: 182 TMNFDAVEGKPIRLMWSQRDACLRKSGVG-NVIIKNLDRSVDNKTLYEHFSGFGRIL-SS 239
Query: 153 KIMN----------------------MIKLYGKPI------------RVNKASSHQKNLD 178
K+M+ + ++ GK I R ++ + +
Sbjct: 240 KVMSDDQGSKGYAFVHFQSQSAADCAIQEMNGKVIRDRQVLVAPFRSRRDREAELRTRTS 299
Query: 179 VGANIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDAS 218
N+++ N L ++M D +G SKGF F+++ S EA+ +
Sbjct: 300 EFTNVYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKA 358
Query: 219 IDAMHGQYLCNRPISVSYAFKKDSK 243
++ M+G+ + + + V A KK+ +
Sbjct: 359 VEEMNGKDINGQLVFVGRAQKKEER 383
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 89/221 (40%), Gaps = 59/221 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV + + + + +F + G ++V + D ++ +G+GF+ F E A A++ M
Sbjct: 304 VYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGKS-KGFGFVSFDSHEAAKKAVEEM 362
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N + G+ + R K Q L G ++I NLD VD+ L
Sbjct: 363 NGKDINGQLVFVGRAQKKEERQAELKQVFEELKRDGARRCQGVKLYIKNLDDTVDDDRLR 422
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS+FG I + K+M + G
Sbjct: 423 RAFSSFGSISRV-KVME----------------------------------------EEG 441
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
KGF + ++S E + ++ M+G+ L ++P++++ A ++
Sbjct: 442 QRKGFGLVCFSSPEEAAKAMTQMNGRVLGSKPLNIALAKRQ 482
>gi|403216887|emb|CCK71383.1| hypothetical protein KNAG_0G03260 [Kazachstania naganishii CBS
8797]
Length = 201
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 76/122 (62%), Gaps = 4/122 (3%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YVG +D +V+ ++ELFVQ+ PVV++ P+D+V QT QGY F+ +DADYA++++
Sbjct: 8 LYVGNIDPRVTREQLYELFVQACPVVSLRYPRDKVLQTPQGYAFVGVPSVQDADYAVQLL 67
Query: 97 -NMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
N + L+G+P+++ +A S+ + A +++G L VD + L F FG + + P
Sbjct: 68 HNCVTLHGRPLKIRRARPDSAEAADTAPVARLYVGGLAATVDAQQLARVFGKFGALYRPP 127
Query: 153 KI 154
+
Sbjct: 128 TV 129
>gi|302808075|ref|XP_002985732.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
gi|300146641|gb|EFJ13310.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
Length = 635
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 120/261 (45%), Gaps = 54/261 (20%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG LD V+E ++++F Q PV+++ + +D +++ GY ++ + +DA A+++
Sbjct: 38 SLYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEM 97
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP-- 152
+N + GKPIR+ + G ANIFI NLD +D K LYDTF+ FG IL
Sbjct: 98 LNFSLVNGKPIRIMFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKVA 157
Query: 153 -------------------------KIMNMIKLYGKPIRVNKASSHQKNLDVGA-----N 182
K +N + L K + V Q+ G N
Sbjct: 158 VDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDLTGGIAKFNN 217
Query: 183 IFIGNL--------------------DPEIMRDPDTGNSKGFAFINYASFEASDASIDAM 222
+++ NL +MRDP+ G SK F F+N+ + + + +++ +
Sbjct: 218 VYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPE-GKSKCFGFVNFENADDAALAVEEL 276
Query: 223 HGQYLCNRPISVSYAFKKDSK 243
+G+ + ++ V A KK +
Sbjct: 277 NGKKMDDKEWYVGRAQKKSER 297
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 125/293 (42%), Gaps = 73/293 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + +++ F Q G +++ + D Q+ +GYGF++F E+ A A
Sbjct: 123 GMANIFIKNLDKSIDNKALYDTFAQFGNILSCKVAVDSSGQS-RGYGFVQFEQEDAAQSA 181
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA-----NIFIGNLDPEVDEKLLYDTFSAFG- 146
IK +N + L K + V Q+ G N+++ NL + L F FG
Sbjct: 182 IKQVNGMLLIEKQVFVGPFVRRQERDLTGGIAKFNNVYVKNLGDATTDDDLKRVFGEFGP 241
Query: 147 ----VILQTPK-----------------IMNMIKLYGKPI--------RVNKASSHQKNL 177
V+++ P+ + + +L GK + R K S + L
Sbjct: 242 ISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWYVGRAQKKSEREAEL 301
Query: 178 DV--------------GANIFIGNLD--------------------PEIMRDPDTGNSKG 203
G N+++ NLD ++MRDP G+SKG
Sbjct: 302 RARYDQERKERSDKYQGVNLYLKNLDDTIDDDKLRELFHGFGTIISCKVMRDPQ-GHSKG 360
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLA 256
F+ +++ E ++ ++ M+G+ + N+PI V+ A K+D + R +AA+ A
Sbjct: 361 SGFVAFSTTEEANRAMTEMNGRMVANKPIYVALAQKRDER--RRFNAAQAQFA 411
>gi|297850132|ref|XP_002892947.1| hypothetical protein ARALYDRAFT_889143 [Arabidopsis lyrata subsp.
lyrata]
gi|297338789|gb|EFH69206.1| hypothetical protein ARALYDRAFT_889143 [Arabidopsis lyrata subsp.
lyrata]
Length = 419
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 111/231 (48%), Gaps = 46/231 (19%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG + +V+E L+ E+F +GPV + + + + YGF+ + A AI
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFASTGPVESCKL----IRKEKSSYGFVHYFDRRSAGLAILS 110
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N L+G+PI+VN A + + D + NIF+G+L PEV + +L++ FS
Sbjct: 111 LNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFNCFS---------- 160
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ D +M D TG S+GF F+++ + +
Sbjct: 161 -----------------------------VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 191
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKG-DRHGSAAERLLAAQNPLSQ 263
+ +ID + G++L +R I ++A K + G D+ S ++ ++ + +S+
Sbjct: 192 DAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSE 242
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 34/145 (23%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
I+VG L +V++ +++ F + + D+ T +G+GF+ F ++DA AI +
Sbjct: 141 IFVGDLSPEVTDAMLFNCFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 97 NMIKLYGKPIRVN-----------KASSHQKN---LDVGAN------------------- 123
L + IR N K SS K+ L G +
Sbjct: 201 TGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYT 260
Query: 124 -IFIGNLDPEVDEKLLYDTFSAFGV 147
+++GNL PEV + L+ F + G
Sbjct: 261 TVYVGNLAPEVSQVDLHRHFHSLGA 285
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 45/217 (20%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG LD V + ++++F Q G VV+V + +D T+ GY ++ + DA A+++
Sbjct: 35 SLYVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAARALEM 94
Query: 96 MNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+N + G+PIR+ N+ S +K+ ANIFI NLD +D K LYDTF FG IL
Sbjct: 95 LNFTPINGRPIRIMYSNRDPSLRKSGT--ANIFIKNLDKSIDNKALYDTFCVFGNILSC- 151
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ D +G SKG+ F+ Y
Sbjct: 152 --------------------------------------KVATDA-SGESKGYGFVQYERD 172
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
EA+ A+I+ ++G + ++ + V +K + + G+
Sbjct: 173 EAAHAAIEKLNGMLMNDKKVYVGPFIRKQERDNSPGN 209
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 134/335 (40%), Gaps = 88/335 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + +++ F G +++ + D ++ +GYGF+++ +E A A
Sbjct: 120 GTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATDASGES-KGYGFVQYERDEAAHAA 178
Query: 93 IK-----IMNMIKLYGKP-IRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFG 146
I+ +MN K+Y P IR + + N+ N+F+ NL E L + F FG
Sbjct: 179 IEKLNGMLMNDKKVYVGPFIRKQERDNSPGNVKFN-NVFVKNLSETTTEDDLREIFGKFG 237
Query: 147 VI--------------------LQTP-------KIMNMIKLYGKPIRVNKASSH------ 173
I ++P + +N K K V +A
Sbjct: 238 TITSVVVMREGDGRSKCFGFVNFESPDEAALAVQDLNGKKFDDKEWYVGRAQKKSEREME 297
Query: 174 -----QKNLDVGA------NIFIGNLDP--------------------EIMRDPDTGNSK 202
+KNL A N+++ NLD ++MRD + G S+
Sbjct: 298 LKEKFEKNLQETADKYQNTNLYLKNLDDTVDDEKLRELFAEFGAITSCKVMRDSN-GASR 356
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLS 262
G F+ + S E + ++ M+ + + ++P+ V+ A +K+ + R + +L P++
Sbjct: 357 GSGFVAFKSAEDASRALAEMNNKMVGSKPLYVALAQRKEDRKARLQAQFSQLRPV--PMA 414
Query: 263 QADRP-------------HQLFADAPPPAPLPPPP 284
P QLF PPPA + P P
Sbjct: 415 PTVGPRMAMFPPGVPGVGQQLFYGQPPPAFINPQP 449
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 131/293 (44%), Gaps = 64/293 (21%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
++++YVG L +VS++ + F + GPV++ + +D T+ GYG++ F + A+ A+
Sbjct: 12 NSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQAL 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+++N L G+PIR+ + G NIFI NLD +++K LYDTFS FG IL
Sbjct: 72 EVLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCK 131
Query: 153 ----------------------------KIMNMI-----KLYGKPIRVNKASSHQKNLDV 179
KI NMI GK I + S + +
Sbjct: 132 IVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKF 191
Query: 180 GANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N+++ N PE +M+D + G SKGF F+ Y + ++ ++
Sbjct: 192 N-NLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKD-NEGKSKGFGFVCYLDPDHAENAV 249
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFA 272
MHG+ + R + + A +K+ + + E+ +A+R +L+
Sbjct: 250 RTMHGKEIEGRVLYCARAQRKEERQEELKQKIEK--------QRAERQSRLYV 294
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 64/163 (39%), Gaps = 48/163 (29%)
Query: 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVIL----------------------------QT 151
+ +++++G+L P V + L FS G +L Q
Sbjct: 11 MNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQA 70
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEIMRDP-------------- 196
+++N L G+PIR+ + G NIFI NLD I +
Sbjct: 71 LEVLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSC 130
Query: 197 -----DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234
+ G SKG+ F+++ E ++ +I+ ++ + +R + V
Sbjct: 131 KIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYV 173
>gi|302785327|ref|XP_002974435.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
gi|300158033|gb|EFJ24657.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
Length = 642
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 120/262 (45%), Gaps = 54/262 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++YVG LD V+E ++++F Q PV+++ + +D +++ GY ++ + +DA A++
Sbjct: 37 TSLYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALE 96
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
++N + GKPIR+ + G ANIFI NLD +D K LYDTF+ FG IL
Sbjct: 97 MLNFSLVNGKPIRIMFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKV 156
Query: 153 --------------------------KIMNMIKLYGKPIRVNKASSHQKNLDVGA----- 181
K +N + L K + V Q+ G
Sbjct: 157 AVDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDLTGGVTKFN 216
Query: 182 NIFIGNL--------------------DPEIMRDPDTGNSKGFAFINYASFEASDASIDA 221
N+++ NL +MRDP+ G SK F F+N+ + + + +++
Sbjct: 217 NVYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPE-GKSKCFGFVNFENADDAALAVEE 275
Query: 222 MHGQYLCNRPISVSYAFKKDSK 243
++G+ + ++ V A KK +
Sbjct: 276 LNGKKMDDKEWYVGRAQKKSER 297
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 125/293 (42%), Gaps = 73/293 (24%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A I++ LD + +++ F Q G +++ + D Q+ +GYGF++F E+ A A
Sbjct: 123 GMANIFIKNLDKSIDNKALYDTFAQFGNILSCKVAVDSSGQS-RGYGFVQFEQEDAAQSA 181
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA-----NIFIGNLDPEVDEKLLYDTFSAFG- 146
IK +N + L K + V Q+ G N+++ NL + L F FG
Sbjct: 182 IKQVNGMLLIEKQVFVGPFVRRQERDLTGGVTKFNNVYVKNLGDATTDDDLKRVFGEFGP 241
Query: 147 ----VILQTPK-----------------IMNMIKLYGKPI--------RVNKASSHQKNL 177
V+++ P+ + + +L GK + R K S + L
Sbjct: 242 ISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWYVGRAQKKSEREAEL 301
Query: 178 DV--------------GANIFIGNLD--------------------PEIMRDPDTGNSKG 203
G N+++ NLD ++MRDP G+SKG
Sbjct: 302 RARYDQERKERSDKYQGVNLYLKNLDDTIDDDKLRELFHGFGTIISCKVMRDPQ-GHSKG 360
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLA 256
F+ +++ E ++ ++ M+G+ + N+PI V+ A K+D + R +AA+ A
Sbjct: 361 SGFVAFSTTEEANRAMTEMNGRMVANKPIYVALAQKRDER--RRFNAAQAQFA 411
>gi|168229272|ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus]
gi|148703238|gb|EDL35185.1| mCG12357 [Mus musculus]
Length = 370
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 125/262 (47%), Gaps = 59/262 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L + V+E +++ F GPV+++ + +D ++Q GY ++ F+ DA A+
Sbjct: 10 ASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQKALV 69
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ + + VG N+FI NLD +D K LY+ FS FG I+ +
Sbjct: 70 TMNFDVIKGKSIRLMWSQRDACLRRSGVG-NVFIKNLDKSIDNKTLYEHFSPFGTIM-SS 127
Query: 153 KIMN----------------------MIKLYGKPIRVNK--ASSHQKNLDVGA------- 181
K+M + ++ GK +R + + + D A
Sbjct: 128 KVMTDGEGSKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKDREAELRDKPT 187
Query: 182 ---NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDAS 218
N++I N L ++M+D TG SKGF F+++ S EA+ +
Sbjct: 188 EFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDA-TGKSKGFGFVSFDSHEAAKNA 246
Query: 219 IDAMHGQYLCNRPISVSYAFKK 240
++ M+GQ + + I V A KK
Sbjct: 247 VEDMNGQDINGQTIFVGRAQKK 268
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 59/216 (27%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D V + + E+F + G ++V + KD T +G+GF+ F E A A++ M
Sbjct: 192 VYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKD-ATGKSKGFGFVSFDSHEAAKNAVEDM 250
Query: 97 NMIKLYGKPI---RVNKASSHQKNLD--------------VGANIFIGNLDPEVDEKLLY 139
N + G+ I R K Q L A ++I NLD +D++ L
Sbjct: 251 NGQDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLR 310
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I + K+M + G
Sbjct: 311 KEFSVFGSICRV-KVM----------------------------------------QEAG 329
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235
SKGF I + S EA+ ++ M+G+ L ++P++++
Sbjct: 330 QSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNIA 365
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 45/217 (20%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG LD V + ++++F Q G VV+V + +D ++ GY ++ + DA A+++
Sbjct: 126 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 185
Query: 96 MNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+N + G+PIR+ N+ S +K+ ANIFI NLD +D K L+DTF FG IL
Sbjct: 186 LNFTPINGRPIRIMYSNRDPSLRKSGT--ANIFIKNLDKSIDNKALHDTFCVFGNILSC- 242
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ DP G SKG+ F+ Y
Sbjct: 243 --------------------------------------KVATDP-AGESKGYGFVQYERD 263
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
EA+ A+I+ ++G + ++ + V +K + + GS
Sbjct: 264 EAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGS 300
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 97/227 (42%), Gaps = 58/227 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV L + +E + E+F + G + +V + +D ++ + +GF+ F ++A A++ +
Sbjct: 306 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRS-KCFGFVNFESPDEAALAVQDL 364
Query: 97 NMIKLYGKPIRVNKASSH-----------QKNLDVGA------NIFIGNLDPEVDEKLLY 139
N K K V +A +KNL A N+++ NLD VD++ L
Sbjct: 365 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 424
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ F+ FG I ++MRD + G
Sbjct: 425 ELFAEFGTITSC---------------------------------------KVMRDSN-G 444
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
S+G F+ + S + + ++ M+ + + N+P+ V+ A +K+ + R
Sbjct: 445 ASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVALAQRKEDRKAR 491
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ +Y+ LDD V + + ELF + G + + + +D +G GF+ F +DA A+
Sbjct: 406 NTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRAL 464
Query: 94 KIMNMIKLYGKPIRVNKASSHQ 115
MN + KP+ V A +
Sbjct: 465 AEMNNKMVGNKPLYVALAQRKE 486
>gi|225442061|ref|XP_002270823.1| PREDICTED: nucleolysin TIAR [Vitis vinifera]
Length = 420
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 106/231 (45%), Gaps = 46/231 (19%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG + +VSE L+ E+F +GPV + V + YGFI + A AI
Sbjct: 54 SVYVGNIHTQVSEPLLQEVFASTGPVEGCKL----VRKEKSSYGFIHYFDRRSAALAILS 109
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N L+G+PI+VN A + + D NIF+G+L PEV + L+ FS
Sbjct: 110 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFS---------- 159
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+F D +M D TG S+GF F+++ + +
Sbjct: 160 -----------------------------VFPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 190
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFK-KDSKGDRHGSAAERLLAAQNPLSQ 263
+ ++I+ + G++L +R I ++A K S D+ S A+ ++ N S+
Sbjct: 191 DAQSAINDITGKWLGSRQIRCNWATKGAGSNDDKQSSDAKSVVELTNGSSE 241
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 89/231 (38%), Gaps = 42/231 (18%)
Query: 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMG 85
G E G I+VG L +V++ ++ F + + D+ T +G+GF+ F
Sbjct: 129 GQREDTSGHFNIFVGDLSPEVTDATLFACFSVFPSCSDARVMWDQKTGRSRGFGFVSFRN 188
Query: 86 EEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
++DA AI + L + IR N A+ G+N D+K D S
Sbjct: 189 QQDAQSAINDITGKWLGSRQIRCNWATK-----GAGSN----------DDKQSSDAKSVV 233
Query: 146 GVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPE-------------- 191
++ N GK N+A + +++GNL PE
Sbjct: 234 -------ELTNGSSEDGKETATNEAPDNNPQY---TTVYVGNLAPEVTQLDLHRHFHTFG 283
Query: 192 --IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQ-YLCNRPISVSYAFK 239
++ + KGF F+ Y + + +I + Q LC +PI S+ K
Sbjct: 284 AGVIEEVRVQRDKGFGFVRYNTHAEAALAIQMGNTQSILCGKPIKCSWGSK 334
>gi|357117760|ref|XP_003560630.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
5-like [Brachypodium distachyon]
Length = 654
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 123/273 (45%), Gaps = 60/273 (21%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G S ++YVG L+ V+E + +LF Q+ PVV+V + D+VT GY ++ F E
Sbjct: 24 GPSFGSSVSVYVGNLEASVTEQQLLDLFSQAVPVVSVRICDDKVTGRSLGYAYVNFHSHE 83
Query: 88 DADYAIKIMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSA 144
DA A++ N + GK IRV N+ + +++ AN+FI NL+P + K L+ FS
Sbjct: 84 DAKVALEYFNFTVVNGKSIRVMFSNRDPTLRRS--GAANLFIKNLEPNIVAKSLHQMFSR 141
Query: 145 FGVILQT------------------------PKIMNMI--KLY---GKPIRVNKASSHQK 175
FG+IL MN + KL GK + V+ ++
Sbjct: 142 FGIILSCKVATDLNGKSKGYGFVQFVSEESAKDAMNALNGKLANGNGKQLYVDLFIRREE 201
Query: 176 NLDVG-----ANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYA 210
+G N++ NL E +M+D D G SK F F+NY
Sbjct: 202 RQHIGGASKFTNVYTKNLPKEFTDDDLCRVFAPFGTITSAVVMKDGD-GESKCFGFVNYE 260
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
E ++ +++ ++G+ + + + V A +K +
Sbjct: 261 KTEYAEEAVEKLNGKIISDVALYVGRAKRKQER 293
>gi|281204064|gb|EFA78260.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 617
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 49/229 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSG--PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
++YVG L V+E ++ ELF + G V ++H+ +D +T GY ++ F DA+ A
Sbjct: 138 TSLYVGDLAPDVNEIMLSELFSKVGRSAVASIHVCRDSITFRSLGYAYVNFFNSIDAERA 197
Query: 93 IKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
+ +N ++ G+P R+ + ++ +VG NIF+ NLD +VD +L+DTFS FG IL
Sbjct: 198 LDTLNYSQIMGRPCRIMWSLRDPTKRKSNVG-NIFVKNLDKQVDNAMLFDTFSKFGNIL- 255
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
+ KI + + G SKG+ ++++
Sbjct: 256 SCKI----------------------------------------EYEKGVSKGYGYVHFE 275
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
+ E+SD +I ++G LC +PI+V SK +R E L +N
Sbjct: 276 TQESSDRAIQGVNGTMLCGKPITVEQFV---SKVERFKEKNEHKLFIKN 321
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 84/213 (39%), Gaps = 44/213 (20%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
I+V LD +V ++++ F + G +++ + ++ +GYG++ F +E +D AI+ +
Sbjct: 230 IFVKNLDKQVDNAMLFDTFSKFGNILSCKIEYEKGVS--KGYGYVHFETQESSDRAIQGV 287
Query: 97 NMIKLYGKPIRVNKASSHQKNLDVG--ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI 154
N L GKPI V + S + +FI N+D + L S FG I
Sbjct: 288 NGTMLCGKPITVEQFVSKVERFKEKNEHKLFIKNIDELATVEQLQAELSRFGEI------ 341
Query: 155 MNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEA 214
+ I+R + G SKG F+ + S E
Sbjct: 342 ----------------------------------ESCIIRLDNNGKSKGLGFVEFKSVED 367
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSKGDRH 247
+ +D + ++PI++ K + H
Sbjct: 368 AQRLMDNPEPIQILSKPITIDRIKNKMERNIEH 400
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ T+++ +D+ + + ++ E F + G ++ + + ++ ++G+GF+ + +E+A+ AI
Sbjct: 458 NLTLFIHNIDESIDKEVIREEFAKHGTILGIKIVQE--NGKNRGFGFLSYSTQEEANIAI 515
Query: 94 KIMNMIKLYGKPIRV 108
+ MN L KP+ V
Sbjct: 516 EKMNGFILGSKPLSV 530
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 41/120 (34%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+FI N+D +D++++ + F+ G IL G I
Sbjct: 461 LFIHNIDESIDKEVIREEFAKHGTIL------------------------------GIKI 490
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
N G ++GF F++Y++ E ++ +I+ M+G L ++P+SVS++ +K K
Sbjct: 491 VQEN-----------GKNRGFGFLSYSTQEEANIAIEKMNGFILGSKPLSVSFSNRKYKK 539
>gi|341884731|gb|EGT40666.1| CBN-PAB-2 protein [Caenorhabditis brenneri]
Length = 707
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 98/201 (48%), Gaps = 41/201 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++Y+G L V+E++++E F +GPV+++ + +D ++ GY ++ F DA+ A+
Sbjct: 62 ASLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALD 121
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
MN ++G+P+R+ + G NIFI NLD +D K +YDTFS FG IL
Sbjct: 122 TMNFEIIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLFGNILSC-- 179
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ D D GNSKG+ F+++ +
Sbjct: 180 -------------------------------------KVATD-DDGNSKGYGFVHFETEA 201
Query: 214 ASDASIDAMHGQYLCNRPISV 234
++ +I+ ++G L ++ + V
Sbjct: 202 SAQTAIEKVNGMLLSDKKVFV 222
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/247 (19%), Positives = 97/247 (39%), Gaps = 63/247 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GESG ++V + + E + E+F + G + + + D +G+GF+ + E
Sbjct: 236 GESGLKYTNVFVKNFGEHLDEAKLKEMFSKYGEINSAVVMTD-AEGKPKGFGFVAYADPE 294
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKNLDV-------------------GANIFIGN 128
A A+ +N L G ++++ + +K+ G N+++ N
Sbjct: 295 AASKAVDDLNESILEGTELKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKN 354
Query: 129 LDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNL 188
++ E+ ++ L F+ FG I
Sbjct: 355 IEEELTDEGLRAHFAQFGTITSA------------------------------------- 377
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
++M D + G SKGF F+ + E + A++ M+ + + +P+ V+ A +K+ DR
Sbjct: 378 --KVMVD-ENGRSKGFGFVCFEKPEEATAAVTEMNSKMIGAKPLYVALAQRKE---DRRA 431
Query: 249 SAAERLL 255
A + +
Sbjct: 432 QLASQYM 438
>gi|384245275|gb|EIE18770.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 351
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 109/240 (45%), Gaps = 44/240 (18%)
Query: 17 QSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQ 76
Q++SQ G SGD +YVG L V++ ++ E+F G V + + KD++T
Sbjct: 6 QAVSQNPARLG--SGDAAKALYVGNLHPFVTDAMLQEIFSTLGQVGEIKIIKDKLTGLSA 63
Query: 77 GYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA--NIFIGNLDPEVD 134
GYGF++F+ AD A++ +N L+G+ +RVN A + D + IF+G+L +++
Sbjct: 64 GYGFVQFLDHRAADMALQSLNGRVLHGQELRVNWAFQKDQREDSASQFQIFVGDLASDIN 123
Query: 135 EKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMR 194
+KLL + F + G D +M
Sbjct: 124 DKLLCEAFQSCGCA----------------------------------------DARVMW 143
Query: 195 DPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
D +TG SKG+ F+++ + ++ ++ M G L +R I +A K +A +R+
Sbjct: 144 DHNTGRSKGYGFVSFKTRADAEQALSQMSGTMLGSRRIRCGWAQHKQENSQASFAAVDRV 203
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 84/227 (37%), Gaps = 65/227 (28%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
I+VG L +++ L+ E F QS + + D T +GYGF+ F DA+ A+ M
Sbjct: 113 IFVGDLASDINDKLLCEAF-QSCGCADARVMWDHNTGRSKGYGFVSFKTRADAEQALSQM 171
Query: 97 NMIKLYGKPIRVNKASSHQKNLDVG-------------------ANIFIGNLDPEVDEKL 137
+ L + IR A Q+N AN+++GNL P+V +
Sbjct: 172 SGTMLGSRRIRCGWAQHKQENSQASFAAVDRVSTLSRAQADPENANVYVGNLAPDVSDAE 231
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L S FG +L +K+Y K
Sbjct: 232 LQTAVSQFGAVLD-------VKIYRKG--------------------------------- 251
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
G+AF +AS + +I + GQ L + + S+ + KG
Sbjct: 252 -----GYAFAQFASHADAVRAIVGLSGQNLGGKALKCSWGRHQARKG 293
>gi|297742974|emb|CBI35841.3| unnamed protein product [Vitis vinifera]
Length = 407
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 106/231 (45%), Gaps = 46/231 (19%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG + +VSE L+ E+F +GPV + V + YGFI + A AI
Sbjct: 41 SVYVGNIHTQVSEPLLQEVFASTGPVEGCKL----VRKEKSSYGFIHYFDRRSAALAILS 96
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N L+G+PI+VN A + + D NIF+G+L PEV + L+ FS
Sbjct: 97 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFS---------- 146
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+F D +M D TG S+GF F+++ + +
Sbjct: 147 -----------------------------VFPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 177
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFK-KDSKGDRHGSAAERLLAAQNPLSQ 263
+ ++I+ + G++L +R I ++A K S D+ S A+ ++ N S+
Sbjct: 178 DAQSAINDITGKWLGSRQIRCNWATKGAGSNDDKQSSDAKSVVELTNGSSE 228
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 89/231 (38%), Gaps = 42/231 (18%)
Query: 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMG 85
G E G I+VG L +V++ ++ F + + D+ T +G+GF+ F
Sbjct: 116 GQREDTSGHFNIFVGDLSPEVTDATLFACFSVFPSCSDARVMWDQKTGRSRGFGFVSFRN 175
Query: 86 EEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
++DA AI + L + IR N A+ G+N D+K D S
Sbjct: 176 QQDAQSAINDITGKWLGSRQIRCNWATK-----GAGSN----------DDKQSSDAKSVV 220
Query: 146 GVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPE-------------- 191
++ N GK N+A + +++GNL PE
Sbjct: 221 -------ELTNGSSEDGKETATNEAPDNNPQY---TTVYVGNLAPEVTQLDLHRHFHTFG 270
Query: 192 --IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQ-YLCNRPISVSYAFK 239
++ + KGF F+ Y + + +I + Q LC +PI S+ K
Sbjct: 271 AGVIEEVRVQRDKGFGFVRYNTHAEAALAIQMGNTQSILCGKPIKCSWGSK 321
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 117/253 (46%), Gaps = 60/253 (23%)
Query: 50 LMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV- 108
+++E F +GP++++ + +D +T+ GY + F DA+ A+ MN + GKP+R+
Sbjct: 1 MLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTMNFDVIKGKPVRIM 60
Query: 109 -NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI------------- 154
++ + VG N+FI NL+ +D K LYDTFSAFG IL +
Sbjct: 61 WSQRDPSLRRSGVG-NVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENGSKGHGFVH 119
Query: 155 -------------MNMIKLYGKPIRVNK-ASSHQKNLDVG------ANIFIGN------- 187
MN + L + + V + S ++ ++G N++I N
Sbjct: 120 FETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDD 179
Query: 188 -------------LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234
L ++M D + G SKGF F+++ E + ++D M+G+ L + I V
Sbjct: 180 ETLNGLFGRFGQILSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 238
Query: 235 SYAFKKDSKGDRH 247
A KKD DRH
Sbjct: 239 GRAQKKD---DRH 248
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 106/242 (43%), Gaps = 60/242 (24%)
Query: 20 SQTKLEGGGESGDGDAT-IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGY 78
SQ + E +G + T +Y+ D++ + + LF + G +++V + D ++ +G+
Sbjct: 150 SQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKS-KGF 208
Query: 79 GFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS----------------SHQKNLDV-G 121
GF+ F EDA A+ MN +L GK I V +A + K++ G
Sbjct: 209 GFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQG 268
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGA 181
N+++ NLD +D++ L FS FG I T K+M
Sbjct: 269 INLYVKNLDDGIDDERLQKEFSPFGTITST-KVMT------------------------- 302
Query: 182 NIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
+ G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+
Sbjct: 303 ---------------EGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKE 347
Query: 242 SK 243
+
Sbjct: 348 ER 349
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 125/262 (47%), Gaps = 59/262 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L+++ F GPV+++ + +D VT+ GY ++ F+ DA A+
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K LY+ FSAFG IL +
Sbjct: 70 TMNFDLIKGKSIRLMWSQRDAYLRKSGIG-NVFIKNLDRSIDNKTLYEHFSAFGKIL-SS 127
Query: 153 KIM---------------NMI-----------------KLY-GK-PIRVNKASSHQKNLD 178
K+M N I +L+ G+ R ++ + Q
Sbjct: 128 KVMSDDHGSRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKSRKDREAEFQNKAH 187
Query: 179 VGANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDAS 218
N++I N E +M D +G SKGF F+++ S EA+ +
Sbjct: 188 EFTNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKRA 246
Query: 219 IDAMHGQYLCNRPISVSYAFKK 240
++ M+G+ + + + V A KK
Sbjct: 247 VEEMNGKDINGQLLFVGRAQKK 268
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 59/220 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D++ + + E+F + G ++V + D ++ +G+GF+ F E A A++ M
Sbjct: 192 VYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKS-KGFGFVSFDSHEAAKRAVEEM 250
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N + G+ + R K + Q L GA ++I NLD +D++ L
Sbjct: 251 NGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCQGAKLYIKNLDETIDDEKLR 310
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS+FG I + K+M + G
Sbjct: 311 REFSSFGSISRV-KVM----------------------------------------QEEG 329
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239
SKGF I ++S E + ++ M+G+ L ++P++++ A K
Sbjct: 330 RSKGFGLICFSSAEEATKAMTEMNGRILGSKPLNIALAQK 369
>gi|345316987|ref|XP_003429815.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Ornithorhynchus anatinus]
Length = 540
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 44/200 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +G ++++ + +D ++ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG NIFI NLD +D K LYDTFS FG IL
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG-NIFIKNLDDSIDNKALYDTFSTFGNILSCK 129
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
+ D S+GF F+++ +
Sbjct: 130 VVC-----------------------------------------DEHGSRGFGFVHFETR 148
Query: 213 EASDASIDAMHGQYLCNRPI 232
EA+ +I M+G L +R +
Sbjct: 149 EAASQAISTMNGMLLNDRKV 168
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 103/248 (41%), Gaps = 44/248 (17%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G I++ LDD + +++ F G +++ + D +G+GF+ F E
Sbjct: 92 GLRKSGVGNIFIKNLDDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETRE 149
Query: 88 DADYAIKIMNMIKLYGKPI---------RVNKASSHQKNLD-----VGANIFIGNLDPEV 133
A AI MN + L + + RV V A E+
Sbjct: 150 AASQAISTMNGMLLNDRKVGAQPCCPAGRVGSGKRPPSGRSRPAGPVPAQAVTSMNGKEL 209
Query: 134 DEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP--- 190
+ ++LY G + + + +K + I+ + + +Q G N+++ NLD
Sbjct: 210 NGRVLY-----VGRAQKRTERQSELKRKFEQIKQERVNRYQ-----GVNLYVKNLDDCID 259
Query: 191 -EIMRD--------------PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235
E +R ++G+SKGF F+ ++S E + ++ M+G+ + +P+ V+
Sbjct: 260 DEKLRKEFSPYGTITSAKVMTESGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 319
Query: 236 YAFKKDSK 243
A +K+ +
Sbjct: 320 LAQRKEER 327
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 114/243 (46%), Gaps = 55/243 (22%)
Query: 55 FVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV--NKAS 112
F +GP++++ + +D +T+ GY ++ F DA+ A+ MN + G+P+R+ ++
Sbjct: 18 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPLRIMWSQRD 77
Query: 113 SHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI------------------ 154
+ VG NIFI NLD +D K LYDTFSAFG IL +
Sbjct: 78 PSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHE 136
Query: 155 --------MNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGN----LDPEIMRD 195
MN + L + + V + S ++ ++GA N++I N +D E +++
Sbjct: 137 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKE 196
Query: 196 ---------------PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D+G SKGF F+++ E + ++D M+G+ L R + V A KK
Sbjct: 197 LFSKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKK 256
Query: 241 DSK 243
+
Sbjct: 257 GER 259
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ELF + GP +++ + D ++ +G+GF+ F EDA A+ M
Sbjct: 180 VYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDSGKS-KGFGFVSFERHEDAQKAVDDM 238
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L G+ + R K Q L G N+++ NLD +D++ L
Sbjct: 239 NGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLR 298
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 299 KEFSPFGTITSAKVMM-----------------------------------------EGG 317
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 318 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 361
>gi|29336045|ref|NP_444344.1| polyadenylate-binding protein 5 [Mus musculus]
gi|26341316|dbj|BAC34320.1| unnamed protein product [Mus musculus]
gi|76827669|gb|AAI07363.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|76828194|gb|AAI07364.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|148701502|gb|EDL33449.1| poly A binding protein, cytoplasmic 5 [Mus musculus]
Length = 381
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 124/284 (43%), Gaps = 61/284 (21%)
Query: 39 VGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNM 98
VG LD V+E ++++ F +GP+ + +D VT++ GYG++ F DA++A+ MN
Sbjct: 21 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 80
Query: 99 IKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI--- 154
+ GKP R+ + + G NIFI NLD +D + L+ FSAFG IL +
Sbjct: 81 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDD 140
Query: 155 -----------------------MNMIKLYGKPIRVNK--------ASSHQKNLDVGANI 183
MN ++L + + V + A + N+
Sbjct: 141 NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRERATFTNV 200
Query: 184 FIGN----LDPE----------------IMRDPDTGNSKGFAFINYASFEASDASIDAMH 223
F+ N +D E ++RD TG SKGF F+ Y + EA+ ++ +H
Sbjct: 201 FVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDA-TGKSKGFGFVRYETHEAAQKAVLELH 259
Query: 224 GQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRP 267
G+ + + + V A KK + ERL L + +RP
Sbjct: 260 GKSIDGKVLCVGRAQKKIERLAELRRRFERL-----KLKEKNRP 298
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 89/218 (40%), Gaps = 59/218 (27%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++V D + + + +LF + GP +V + +D T +G+GF+ + E A A+
Sbjct: 198 TNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRD-ATGKSKGFGFVRYETHEAAQKAVL 256
Query: 95 IMNMIKLYGKPIRVNKASSH-----------------QKNLDVGANIFIGNLDPEVDEKL 137
++ + GK + V +A +KN G I+I NLD ++++
Sbjct: 257 ELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKEKNRPSGVPIYIKNLDETINDEK 316
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + FS+FG I + +M +
Sbjct: 317 LKEEFSSFGSISRAKVMM-----------------------------------------E 335
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235
G KGF + ++SFE + ++D M+G+ + ++ + V+
Sbjct: 336 VGQGKGFGVVCFSSFEEACKAVDEMNGRIIGSKTLHVT 373
>gi|367003291|ref|XP_003686379.1| hypothetical protein TPHA_0G01080 [Tetrapisispora phaffii CBS 4417]
gi|357524680|emb|CCE63945.1| hypothetical protein TPHA_0G01080 [Tetrapisispora phaffii CBS 4417]
Length = 220
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 57/249 (22%)
Query: 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
+ + + + T+YVG +D +V+ +++ELFVQ P+ ++ PKD+V Q +QGY FI+F
Sbjct: 1 MNSNNKVWNSNKTVYVGNIDPQVTLDILYELFVQVAPISSIKYPKDKVLQAYQGYAFIDF 60
Query: 84 MGEEDADYAIKIM-NMIKLYGKPIRV-------NKASSHQKNLDVGAN--------IFIG 127
E+D Y IK+M N ++LYGK ++V + ++++ N AN +FI
Sbjct: 61 FTEDDVQYVIKVMNNTVRLYGKLLKVRLSNYALSASTANASNKTETANVEILPVPKVFIK 120
Query: 128 NLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGN 187
++D + L F G +L+ P+ + YGK +R
Sbjct: 121 DIDSTTTTETLSSLFKKIGPVLKEPEFFYL--SYGK-LRC-------------------- 157
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD-SKGDR 246
A++ +++ SD +I ++ + N+ + V YAFK + SK +
Sbjct: 158 -----------------AYLYMKNYDDSDKAIKILNNSLVGNKRVKVDYAFKDNTSKVIK 200
Query: 247 HGSAAERLL 255
G +RLL
Sbjct: 201 FGEDIDRLL 209
>gi|410083501|ref|XP_003959328.1| hypothetical protein KAFR_0J01260 [Kazachstania africana CBS 2517]
gi|372465919|emb|CCF60193.1| hypothetical protein KAFR_0J01260 [Kazachstania africana CBS 2517]
Length = 365
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 103/219 (47%), Gaps = 44/219 (20%)
Query: 25 EGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFM 84
EGG E+ D +Y+G LD ++E + + F +G +V+V + D+ H Y FIE+
Sbjct: 23 EGGRETSD--KVLYIGNLDKSINEDALKQYFQVAGQIVDVKVMVDK-KNNHVNYAFIEYS 79
Query: 85 GEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNL--DVGANIFIGNLDPEVDEKLLYDTF 142
DA+ A++ +N I++ K I++N A Q NL D N+FIG+L+ VD+ L + F
Sbjct: 80 TNHDANVALQTLNGIQIENKNIKINWAFQSQTNLNDDTSFNLFIGDLNVNVDDTTLANAF 139
Query: 143 SAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSK 202
+ P G L +M D T S+
Sbjct: 140 KS------CP---------------------------------GFLQAHVMWDMQTSRSR 160
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
G+ F+++ + E + A++D M G + R I +++A K++
Sbjct: 161 GYGFVSFDTHENAQAAMDQMQGHEINGRAIRINWATKRE 199
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 20 SQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYG 79
SQT L + D +++G L+ V +T + F + H+ D T +GYG
Sbjct: 109 SQTNL-----NDDTSFNLFIGDLNVNVDDTTLANAFKSCPGFLQAHVMWDMQTSRSRGYG 163
Query: 80 FIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQ 115
F+ F E+A A+ M ++ G+ IR+N A+ +
Sbjct: 164 FVSFDTHENAQAAMDQMQGHEINGRAIRINWATKRE 199
>gi|289742137|gb|ADD19816.1| polyA-binding protein [Glossina morsitans morsitans]
Length = 653
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 41/201 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E ++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSNAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
MN L KPIR+ + G N+FI NLD +D K +YDTFSAFG IL
Sbjct: 62 TMNFDLLRNKPIRIMWSQRDPSLRRSGIGNVFIKNLDKTIDNKAIYDTFSAFGNILSC-- 119
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ D D G SKG+ F+++ + E
Sbjct: 120 -------------------------------------KVATD-DKGTSKGYGFVHFETEE 141
Query: 214 ASDASIDAMHGQYLCNRPISV 234
A++ +I+ ++G L + + V
Sbjct: 142 AANNAIEKVNGMLLNGKKVYV 162
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 63/249 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVN--VHMPKDRVTQTHQGYGFIEFMG 85
GE +YV D V + + E+F G + + V + +D ++ +GF+ F
Sbjct: 176 GEKAKLFTNVYVKNFGDDVDDEKLKEMFDPYGKITSYKVMIKEDGKSKC---FGFVAFET 232
Query: 86 EEDADYAIKIMNMIKLY-GKPI---RVNKASSHQKNLD--------------VGANIFIG 127
E A+ A++ +N + GK + R K + Q+ L G N+++
Sbjct: 233 TEAAEAAVEALNGKDMGDGKALYVARAQKKAERQQELKRKFEELKKKRQESVYGVNLYVK 292
Query: 128 NLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGN 187
NLD +D++ L FS FG I
Sbjct: 293 NLDDTIDDERLRKEFSLFGTI--------------------------------------- 313
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRH 247
++M D D G SKGF F+ + + + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 314 TSAKVMTDED-GRSKGFGFVCFVAPHEATCAVTEMNGRVVGSKPLYVALAQRKEDRKAHL 372
Query: 248 GSAAERLLA 256
S R +A
Sbjct: 373 ASQYMRHMA 381
>gi|323448756|gb|EGB04650.1| hypothetical protein AURANDRAFT_55048 [Aureococcus anophagefferens]
Length = 604
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 43/212 (20%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
A++YVG L SE L++E+F GPV ++ + +D VT+ GY ++ F DA+ A+
Sbjct: 11 SASLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAERAL 70
Query: 94 KIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
MN + KP R+ ++ + VG N+F+ NLD +D K L+DTFS FG IL
Sbjct: 71 DTMNYTLIKSKPCRIMWSQRDPTLRKSGVG-NVFVKNLDASIDHKALFDTFSLFGNILSC 129
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
++ D + G S+G+ +++Y S
Sbjct: 130 ---------------------------------------KVATD-EAGRSQGYGYVHYES 149
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+A+ +I+ ++ +C++ + V + ++ +
Sbjct: 150 EDAATDAINKINSMTICDKEVYVGHFVRRTER 181
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/329 (20%), Positives = 125/329 (37%), Gaps = 84/329 (25%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
G ++V LD + +++ F G +++ + D ++ QGYG++ + E+ A
Sbjct: 97 SGVGNVFVKNLDASIDHKALFDTFSLFGNILSCKVATDEAGRS-QGYGYVHYESEDAATD 155
Query: 92 AIKIMNMIKLYGKPIRVNK--ASSHQKNLDVGANIFIGNLDPEVDEKLL---YDTF---- 142
AI +N + + K + V + + N+++ N + DE+ L ++TF
Sbjct: 156 AINKINSMTICDKEVYVGHFVRRTERSGQSDWTNLYVKNFPADWDEETLRKAFETFGAIT 215
Query: 143 ----------SAFGVI---LQTPKIMNMIKLYG----------------KPIRVNKAS-- 171
SAFG + + M L G P+ V +A
Sbjct: 216 SCKAAAAADGSAFGWVNFEAHDAAVAAMDALNGIAELPGQAGGAPTTLKAPLFVGRAQKK 275
Query: 172 -SHQKNLDV--------------GANIFIGN--------------------LDPEIMRDP 196
++ L G N+F+ N +MR+P
Sbjct: 276 IERERELKAKFDAAKIERIKKYQGVNLFVKNLDDGLDDDQLRENFAEYGTITSARVMREP 335
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLA 256
TG S+GF F+ ++S E + ++ M+ + + +PI V+ A +K+ + L
Sbjct: 336 ATGTSRGFGFVCFSSPEEAAKAVTEMNNKLVLGKPIFVALAQRKEVR--------RAQLE 387
Query: 257 AQNPLSQADRPHQLFADAPPPAPLPPPPP 285
AQ+ + P+ A PA +PP P
Sbjct: 388 AQHAQRRTTAPYGAHPGAMGPAGVPPHAP 416
>gi|299473651|emb|CBN78045.1| poly(A) binding protein [Ectocarpus siliculosus]
Length = 688
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 99/211 (46%), Gaps = 43/211 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E ++E+F Q GPV ++ + +D VT+ GY ++ F DA+ A+
Sbjct: 42 ASLYVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALD 101
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + + R+ ++ + VG NIF+ NLD VD K LYDTFS FG IL
Sbjct: 102 TMNFTTIKDQACRIMWSQRDPSLRRSGVG-NIFVKNLDETVDNKALYDTFSLFGNILSC- 159
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ D D G SKG+ +++Y
Sbjct: 160 --------------------------------------KVATD-DAGESKGYGYVHYEGG 180
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++ +I ++G + + + V + ++D++
Sbjct: 181 VSANMAIAKINGMLIAGKQVHVGHFVRRDNR 211
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 93/253 (36%), Gaps = 78/253 (30%)
Query: 29 ESGDGDAT-IYVGGLDDKVSETLMWELFVQSGPVVNVHM---PKD-----------RVTQ 73
+G D T +YV GL + + E F + G V + + P++
Sbjct: 211 RAGQADWTNLYVKGLPSSWDDAKLREEFEKHGAVTSCKVQVAPQEGQGDESKEKGKGGEG 270
Query: 74 THQGYGFIEFMGEEDADYAIKIMN---------MIKLYGKPIRVNKASSHQKNLDV---- 120
+G+GF+ F E A AI+ +N LY R K S + L
Sbjct: 271 KSRGFGFVNFEEHESAVKAIEALNNAEMPDGEGTTTLY--CARAQKKSERARELQSKHDQ 328
Query: 121 ----------GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKA 170
G N+++ NLD V E + + F+ +G I
Sbjct: 329 VKMERMNKFQGVNVYVKNLDEGVTEDAMREAFAPYGTI---------------------- 366
Query: 171 SSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNR 230
A + + N + SKGF F+ +++ E + +I M+G+ L N+
Sbjct: 367 --------TSARVMVDN--------SNNNQSKGFGFVCFSAPEEATKAITEMNGKMLLNK 410
Query: 231 PISVSYAFKKDSK 243
PI V+ A +++ +
Sbjct: 411 PIYVALAQRREVR 423
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I+V LD+ V +++ F G +++ + D ++ +GYG++ + G A+ A
Sbjct: 128 GVGNIFVKNLDETVDNKALYDTFSLFGNILSCKVATDDAGES-KGYGYVHYEGGVSANMA 186
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG--ANIFIGNLDPEVDEKLLYDTFSAFGVI 148
I +N + + GK + V N+++ L D+ L + F G +
Sbjct: 187 IAKINGMLIAGKQVHVGHFVRRDNRAGQADWTNLYVKGLPSSWDDAKLREEFEKHGAV 244
>gi|301120388|ref|XP_002907921.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
gi|262102952|gb|EEY61004.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
Length = 640
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 113/245 (46%), Gaps = 56/245 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG + V+E L++E+F GPV ++ + +D VT+ GY ++ F DA+ A+
Sbjct: 45 ASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALD 104
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G P R+ ++ + VG NIF+ NLD +D K LYDTFS FG IL
Sbjct: 105 TMNFTSIKGVPCRIMWSQRDPSLRKSGVG-NIFVKNLDTSIDNKALYDTFSLFGNILSCK 163
Query: 153 -----------------------------KIMNMIKLYGKPIRVNKASSHQK--NLDVGA 181
KI M+ + G + V + Q + D
Sbjct: 164 VAIEHTTGNSKGYGYVHYETAEAATEAIAKINGML-IAGTEVFVGQFQKRQDRPDADDWT 222
Query: 182 NIFIGNL-----DPEIMRD-------------PDTGN---SKGFAFINYASFEASDASID 220
N ++ N+ D +++++ D N ++GF F+NY +A+ ++D
Sbjct: 223 NCYVKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVD 282
Query: 221 AMHGQ 225
A++G+
Sbjct: 283 ALNGK 287
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/238 (19%), Positives = 96/238 (40%), Gaps = 69/238 (28%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTH-QGYGFIEFMGEEDAD 90
D YV + + ++ + + F G V++ + KD H +G+GF+ + E++D
Sbjct: 219 DDWTNCYVKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNY---EESD 275
Query: 91 YAIKIMNMIKLYGKPI-----------RVNKASSHQKNLD--------------VGANIF 125
A K ++ + P + K S ++ L G N++
Sbjct: 276 AAHKAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLKMERINKYQGVNLY 335
Query: 126 IGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFI 185
+ NLD ++ + L + F+ G I +
Sbjct: 336 VKNLDDQLSDDELREAFAECGTITSS---------------------------------- 361
Query: 186 GNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+MRDP+ GNS+GF F+ +++ E ++ ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 362 -----RVMRDPN-GNSRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRKEVR 413
>gi|449016981|dbj|BAM80383.1| polyadenylate-binding protein [Cyanidioschyzon merolae strain 10D]
Length = 999
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 97/220 (44%), Gaps = 47/220 (21%)
Query: 22 TKLEGGGESGDGD---ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGY 78
T + SG G+ ++YVG L V E ++ELF GPVV+V + +D VT+ GY
Sbjct: 160 TAVPAASASGTGELPNVSLYVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVTRRSLGY 219
Query: 79 GFIEFMGEEDADYAIKIMNMIK---LYGKPIRVN-KASSHQKNLDVGANIFIGNLDPEVD 134
++ F EDA+ AI ++ + KPIR+ K S + + NIFI NLD +D
Sbjct: 220 AYVNFQNPEDAERAIDVLQFYEGPLTKNKPIRIMWKRSDPSQRRNPEGNIFIKNLDKSID 279
Query: 135 EKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMR 194
K LYDTFS FG +L ++
Sbjct: 280 NKALYDTFSTFGKVLSC---------------------------------------KLAT 300
Query: 195 DPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234
D D GNS G+AF++Y + I M+G L + + V
Sbjct: 301 D-DKGNSLGYAFVHYQDANVAKYVISKMNGMLLNGQKVYV 339
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 61/187 (32%)
Query: 76 QGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSH-------------------QK 116
+G+ F+ F E A A++ +N ++L GK + V +A QK
Sbjct: 469 RGFAFVNFETPEQAAAAVEALNGMELNGKTLYVGRAQKKAEREAMLRAQMEQLRNDRMQK 528
Query: 117 NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKN 176
DV N+F+ NL +VDE L + FS FG I
Sbjct: 529 LQDV--NLFVKNLSDDVDENRLREEFSRFGTITSL------------------------- 561
Query: 177 LDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSY 236
IMRD + G SKGF F+ ++ + + ++ M+ + + +PI V+
Sbjct: 562 --------------RIMRD-EKGVSKGFGFVAFSHPDEAIKAVTEMNQRIVGQKPIYVAL 606
Query: 237 AFKKDSK 243
A +KD +
Sbjct: 607 AQRKDQR 613
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 106/273 (38%), Gaps = 45/273 (16%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ I++ LD + +++ F G V++ + D + GY F+ + A Y I
Sbjct: 266 EGNIFIKNLDKSIDNKALYDTFSTFGKVLSCKLATDDKGNSL-GYAFVHYQDANVAKYVI 324
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVG------ANIFIGNLDPEV-DEKLLYDTFSAFG 146
MN + L G+ + V + ++ G N+++ NLD + + + F+ +G
Sbjct: 325 SKMNGMLLNGQKVYVGEFRPRREREATGELSTKFTNVYVKNLDESLCTTEEVTKLFAPYG 384
Query: 147 ----VILQTPKIMNMIKLYGKPIRV----------NKASSHQKNLDVGANIFIGNLDPEI 192
+ + T + + R + S Q+ GA+ D E
Sbjct: 385 NITSIFIPTETVQEQQPHHEDEHRAPSEEASSEAGRQGGSSQEVKSAGADQSNAAPDLET 444
Query: 193 MRDPDTGNS---------------KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
D + +GFAF+N+ + E + A+++A++G L + + V A
Sbjct: 445 SERNDGAKAPENRAHAQSVVRVRPRGFAFVNFETPEQAAAAVEALNGMELNGKTLYVGRA 504
Query: 238 FKKDSKGDRHGSAAERLLAAQNPLSQADRPHQL 270
KK + E +L AQ + DR +L
Sbjct: 505 QKKAER--------EAMLRAQMEQLRNDRMQKL 529
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
D ++V L D V E + E F + G + ++ + +D +G+GF+ F ++A A+
Sbjct: 531 DVNLFVKNLSDDVDENRLREEFSRFGTITSLRIMRDE-KGVSKGFGFVAFSHPDEAIKAV 589
Query: 94 KIMNMIKLYGKPIRV 108
MN + KPI V
Sbjct: 590 TEMNQRIVGQKPIYV 604
>gi|395856984|ref|XP_003800896.1| PREDICTED: polyadenylate-binding protein 5 [Otolemur garnettii]
Length = 382
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 115/257 (44%), Gaps = 56/257 (21%)
Query: 39 VGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNM 98
VG LD V+E ++++ F +GP+ + +D VT + GYG++ F DA++A+ MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 99 IKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI--- 154
L GKP R+ + + G NIFI NLD +D + L+ FSAFG IL +
Sbjct: 82 DLLNGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 155 -----------------------MNMIKLYGKPIRVNK--------ASSHQKNLDVGANI 183
MN ++L + + V + A ++ N+
Sbjct: 142 NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNV 201
Query: 184 FIGNL----DPE----------------IMRDPDTGNSKGFAFINYASFEASDASIDAMH 223
F+ NL D E ++RD +G SKGF F+ Y + EA+ ++ +H
Sbjct: 202 FVKNLGDDMDDEKLKELFSEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 224 GQYLCNRPISVSYAFKK 240
G+ + + + V A KK
Sbjct: 261 GKSIDGKILYVGRAQKK 277
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 89/218 (40%), Gaps = 59/218 (27%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++V L D + + + ELF + GP +V + +D + +G+GF+ + E A A+
Sbjct: 199 TNVFVKNLGDDMDDEKLKELFSEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVL 257
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDV-----------------GANIFIGNLDPEVDEKL 137
++ + GK + V +A + L G I+I NLD +D++
Sbjct: 258 DLHGKSIDGKILYVGRAQKKIERLAELRRRFERLRLKDKSRPPGVPIYIKNLDETIDDEK 317
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + FS FG I + +M +
Sbjct: 318 LKEEFSPFGSISRAKVMM-----------------------------------------E 336
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235
G KGF + ++SFE + ++D M+G+ + ++P+ V+
Sbjct: 337 VGQGKGFGVVCFSSFEEAAKAVDEMNGRTVGSKPLHVT 374
>gi|323448247|gb|EGB04148.1| hypothetical protein AURANDRAFT_70409 [Aureococcus anophagefferens]
Length = 616
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 100/211 (47%), Gaps = 43/211 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L SE L++E+F GPV ++ + +D VT+ GY ++ F DA+ A+
Sbjct: 13 ASLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAERALD 72
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + KP R+ ++ + VG N+F+ NLD +D K L+DTFS FG IL
Sbjct: 73 TMNYTLIKSKPCRIMWSQRDPTLRKSGVG-NVFVKNLDSSIDHKALFDTFSLFGNILSC- 130
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ D + G S+G+ +++Y S
Sbjct: 131 --------------------------------------KVATD-EAGRSQGYGYVHYESE 151
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+A+ +I+ ++ +C++ + V + ++ +
Sbjct: 152 DAATDAINKINSMTICDKEVYVGHFVRRTER 182
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/315 (20%), Positives = 116/315 (36%), Gaps = 79/315 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G ++V LD + +++ F G +++ + D ++ QGYG++ + E+ A A
Sbjct: 99 GVGNVFVKNLDSSIDHKALFDTFSLFGNILSCKVATDEAGRS-QGYGYVHYESEDAATDA 157
Query: 93 IKIMNMIKLYGKPIRVNK--ASSHQKNLDVGANIFIGNLDPEVDEKLLYDTF-------- 142
I +N + + K + V + + N+++ N + DE L F
Sbjct: 158 INKINSMTICDKEVYVGHFVRRTERSGQSDWTNLYVKNFPADWDEATLRKAFEMFAAADG 217
Query: 143 SAFGVIL---QTPKIMNMIKLYGK----------PI---------RVNKASSHQKNLDV- 179
SAFG + + M L G PI R K ++ L
Sbjct: 218 SAFGWVNFEGHDAAVAAMDALNGASELPGHAGTAPITLKSPLFVGRAQKKVERERELKAK 277
Query: 180 -------------GANIFIGN--------------------LDPEIMRDPDTGNSKGFAF 206
G N+F+ N +MR+P TG S+GF F
Sbjct: 278 FDAAKIERIKKYQGVNLFVKNLDDALDDDQLREHFTEYGTITSARVMREPATGTSRGFGF 337
Query: 207 INYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADR 266
+ ++S E + ++ M+ + + +PI V+ A +K+ + AQ A R
Sbjct: 338 VCFSSPEEAAKAVTEMNNKLVLGKPIFVALAQRKEVR------------RAQLEAQHAQR 385
Query: 267 PHQLFADAPPPAPLP 281
H AP A +P
Sbjct: 386 LHPAHLSAPYGAAMP 400
>gi|452820609|gb|EME27649.1| poly(A) binding / translation initiation factor [Galdieria
sulphuraria]
Length = 784
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 106/219 (48%), Gaps = 47/219 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
ATIYVG L +V+E ++E+F GPV +V + +D VT+ GY ++ F +DA+ A++
Sbjct: 77 ATIYVGDLHPEVNEANLFEVFSAIGPVASVRVCRDIVTRRSLGYAYVNFHSMDDAERALE 136
Query: 95 IMNMI---KLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
MN + KP+R+ + GA N+FI NLD +D K L+DTFS FG IL
Sbjct: 137 TMNFYACPQTRDKPMRLMWKNRDPTIRKSGAGNVFIKNLDKAIDNKTLFDTFSVFGNILS 196
Query: 151 TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210
++ D D GNS G+ F+++
Sbjct: 197 C---------------------------------------KVATD-DEGNSLGYGFVHFE 216
Query: 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
+ E ++ +I+ ++G L ++ + V Y FK S+ +R S
Sbjct: 217 NPEDAETAINKVNGMLLNDKQVYVGY-FK--SRQEREAS 252
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 122/295 (41%), Gaps = 74/295 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D + GYGF+ F EDA+ A
Sbjct: 166 GAGNVFIKNLDKAIDNKTLFDTFSVFGNILSCKVATDDEGNSL-GYGFVHFENPEDAETA 224
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKN-----LDVGANIFIGNLDPEV-DEKLLYDTFSAFG 146
I +N + L K + V S Q+ + N++ NL P + E+ + + FS +G
Sbjct: 225 INKVNGMLLNDKQVYVGYFKSRQEREASEETHIFTNVYTKNLIPSMCTEEKIRELFSLYG 284
Query: 147 VIL---------QTPK---IMNMIK---------------LYGKPIRVNKAS-------- 171
I + PK +N K GK + V +A
Sbjct: 285 EITSVYVPVDENEVPKGFAFVNFAKPECAAKAVEELNGRDFEGKSLYVGRAQKKAEREAE 344
Query: 172 ----SHQKNLDV-----GANIFIGNL----DPE----------------IMRDPDTGNSK 202
+ K ++ G N+++ NL D E +MRD D G S+
Sbjct: 345 LRRKAENKRAEILKKYQGVNLYVRNLPDDMDEEGLRKEFSNFGTLTSCRVMRD-DKGVSR 403
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAA 257
GF F+ +++ E + ++ M+G+ + +P+ V A +K+ + + A+R+ AA
Sbjct: 404 GFGFVCFSTPEEATKAVTEMNGKMMGKKPLYVCLAQRKEIR--QAQLEAQRIAAA 456
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 41/202 (20%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ ++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ DA+ A+
Sbjct: 172 NTSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERAL 231
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+ +N + K R+ + G NIFI NLD +D K L+DTF+AFG IL
Sbjct: 232 EQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSC- 290
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ D + G SKG+ F++Y +
Sbjct: 291 --------------------------------------KVATD-EHGASKGYGFVHYVTG 311
Query: 213 EASDASIDAMHGQYLCNRPISV 234
E+++A+I ++G L ++ + V
Sbjct: 312 ESAEAAIKGVNGMQLNDKVVFV 333
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 117/282 (41%), Gaps = 66/282 (23%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE--------- 87
+Y+ L + + + E+F + GP+ + + D + H+G+GF+ + E
Sbjct: 356 LYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGK-HRGFGFVNYENHESASKAVDAL 414
Query: 88 -DADYAIKIMNMIKLYGKPIR---VNKASSHQKNLDV----GANIFIGNLDPEVDEKLLY 139
D DY ++ + + + R + KA QK G N+++ NLD E D++ L
Sbjct: 415 HDKDYKGNVLYVARAQKRTERDAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEKLQ 474
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ F+ FG I ++M+D + G
Sbjct: 475 NEFTPFGTITSC---------------------------------------KVMKD-EKG 494
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
SKGF F+ ++S + + ++ M+G+ L ++P+ VS A +K+ + ++ L AQ
Sbjct: 495 TSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLAQRKEVR--------KQQLEAQM 546
Query: 260 PLSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPPSGLR 301
R Q+ A P AP PP P+ G PP G R
Sbjct: 547 SQRSQMRSQQIAAAGIPGAPYGAPPNPMYFGGAAAYPPHGGR 588
>gi|281340677|gb|EFB16261.1| hypothetical protein PANDA_006204 [Ailuropoda melanoleuca]
Length = 196
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 108/221 (48%), Gaps = 45/221 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L+++ F GPV+++ + +D VT+ GY ++ F+ DA A+
Sbjct: 2 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ ++ + +G N+FI NLD +D K LY+ FSAFG IL +
Sbjct: 62 TMNFDMIKGKPIRLMWSQRDAYLRKSGIG-NVFIKNLDKSIDNKTLYEHFSAFGKIL-SS 119
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
K+M D S+G+AF+++ +
Sbjct: 120 KVM----------------------------------------SDDQGSRGYAFVHFQNQ 139
Query: 213 EASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
A+D +I+ M+G L + + V + +KD + + E
Sbjct: 140 NAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKVNE 180
>gi|402218978|gb|EJT99053.1| hypothetical protein DACRYDRAFT_24132 [Dacryopinax sp. DJM-731 SS1]
Length = 474
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 106/211 (50%), Gaps = 45/211 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG--YGFIEFMGEEDADYA 92
A +YVG L +V+E ++ E+F +GPV +V + DR Q H G YGF+E+ A+ A
Sbjct: 12 AHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQ-HGGLNYGFVEYTDMRSAETA 70
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA---NIFIGNLDPEVDEKLLYDTFSAFGVIL 149
++ +N K++ IRVN A Q+N + + ++F+G+L PEV++++L F+AF +
Sbjct: 71 LQTLNGRKIFDTEIRVNWAYQGQQNKEDTSGHYHVFVGDLSPEVNDEVLAKAFAAFPTM- 129
Query: 150 QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINY 209
D +M D ++G S+G+ F+ +
Sbjct: 130 --------------------------------------SDARVMWDMNSGKSRGYGFLAF 151
Query: 210 ASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
++ +I M+G++L +R I V++A +K
Sbjct: 152 RDKTDAEQAIATMNGEWLGSRAIRVNWANQK 182
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E G ++VG L +V++ ++ + F + + + D + +GYGF+ F + D
Sbjct: 97 EDTSGHYHVFVGDLSPEVNDEVLAKAFAAFPTMSDARVMWDMNSGKSRGYGFLAFRDKTD 156
Query: 89 ADYAIKIMNMIKLYGKPIRVNKAS 112
A+ AI MN L + IRVN A+
Sbjct: 157 AEQAIATMNGEWLGSRAIRVNWAN 180
>gi|296424904|ref|XP_002841985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638239|emb|CAZ86176.1| unnamed protein product [Tuber melanosporum]
Length = 374
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 108/248 (43%), Gaps = 56/248 (22%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L+ V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 53 ASLYVGELEPSVTEAMLFELFSTIGNVASIRVCRDAVTRRSLGYSYVNYNNTADGERALE 112
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 113 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 172
Query: 154 IMNMIK--------LYGKPIRVNKASSH-------QKNLDVG------------------ 180
+ Y N A H +K + VG
Sbjct: 173 AQDEFSNSRGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFDEMKAN 232
Query: 181 -ANIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASDASI 219
N+++ N+DPE+ RD D G S+GF F+N+ + + ++
Sbjct: 233 FTNVYVKNIDPEVTDEEFRTMFENYGPITSASLSRDQD-GVSRGFGFVNFQEHQHAAKAV 291
Query: 220 DAMHGQYL 227
+ +H L
Sbjct: 292 EELHESEL 299
>gi|405970795|gb|EKC35670.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 462
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 127/275 (46%), Gaps = 56/275 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+ + + +D +T+ GY ++ F DA+ A+
Sbjct: 16 ASLYVGDLHPDVTEAMLFEKFSTAGPVLPIRVCRDMITRRSLGYAYVNFQQPADAERALD 75
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 76 TMNFDTIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 134
Query: 153 KI--------------------------MNMIKLYGKPIRVNKASSHQKNLDVGA----- 181
+ +N + L GK + V + S ++ L+V
Sbjct: 135 IVCDEHGSRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLGDKMRK 194
Query: 182 --NIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASI 219
N+++ N EI M D +G KGF F+++ EA++ ++
Sbjct: 195 FNNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAV 254
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
+A++G + + V A KK + ER+
Sbjct: 255 EALNGNDNSGKILYVGRAQKKIERQAELKEKFERI 289
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 10/130 (7%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GYGF+ F EE A A
Sbjct: 102 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVCDE--HGSRGYGFVHFETEEAARIA 159
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA-------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ +N + L GK + V + S ++ L+V N+++ N E++++ L D F +
Sbjct: 160 IEKVNGMLLNGKKVFVGRFMSRRERLEVLGDKMRKFNNVYVKNFSEEINDETLRDMFEPY 219
Query: 146 GVILQTPKIM 155
G I+ + K+M
Sbjct: 220 GKII-SAKVM 228
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 17/143 (11%)
Query: 21 QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGF 80
+ +LE G+ +YV +++++ + ++F G +++ + D + +G+GF
Sbjct: 182 RERLEVLGDKMRKFNNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGF 241
Query: 81 IEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS-----------------HQKNLDVGAN 123
+ F E A+ A++ +N GK + V +A + N G N
Sbjct: 242 VSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIERQAELKEKFERIRMERINRYQGVN 301
Query: 124 IFIGNLDPEVDEKLLYDTFSAFG 146
+++ NLD +D++ L F+ FG
Sbjct: 302 LYVKNLDDNIDDERLRKEFAQFG 324
>gi|441675859|ref|XP_003280927.2| PREDICTED: uncharacterized protein LOC100588478 [Nomascus
leucogenys]
Length = 485
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 112/232 (48%), Gaps = 48/232 (20%)
Query: 27 GGESGDGD---ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
GG G+ D A++YVG L +V+E +++E F +GP++++ + +D++T+ GY ++ +
Sbjct: 276 GGYEGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNY 335
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDT 141
DA A++ +N + G+P+R+ ++ + VG N+FI NL +D K LY+
Sbjct: 336 QQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVG-NVFIKNLGKTIDNKALYNI 394
Query: 142 FSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201
FSAFG IL K + +K
Sbjct: 395 FSAFGNILSC-----------------KVACDEK------------------------GP 413
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
KG+ F+++ E+++ +ID M+G +L R I V + K+ + +R A +
Sbjct: 414 KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 465
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 47/220 (21%)
Query: 31 GDGDA------TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFM 84
G GDA ++YVG LD V+++ +++LF Q G VV+V + +D T+ GYG++ +
Sbjct: 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYN 89
Query: 85 GEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFS 143
+A A+ +N L GKPIR+ + GA NIFI NLD +D K L+DTFS
Sbjct: 90 AAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
Query: 144 AFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKG 203
FG IL + + G S+G
Sbjct: 150 TFGNILSCKVATDSL----------------------------------------GQSRG 169
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ F+ + + E++ ++ID ++G L ++ + V +K +
Sbjct: 170 YGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 113/283 (39%), Gaps = 71/283 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + + + F G +++ + D + Q+ +GYGF++F EE A A
Sbjct: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSA 184
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG-----ANIFIGNLDPEVDEKLLYDTFSAFGV 147
I +N + L K + V Q+ N+++ NL E L F FG+
Sbjct: 185 IDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
Query: 148 ILQTP---------------------------KIMNMIKLYGKPIRVNKAS-SHQKNLDV 179
I T + +N K K V KA +++ +++
Sbjct: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
Query: 180 ----------------GANIFIGNLDPEI--------------------MRDPDTGNSKG 203
G N+++ NLD I MRDP+ G S+G
Sbjct: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRG 363
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
F+ +++ E + ++ M+G+ + ++P+ V+ A +K+ + R
Sbjct: 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRAR 406
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 17 QSLSQT--KLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQT 74
QSL +T K EG +YV LDD +S+ + ELF + G + + + +D
Sbjct: 310 QSLKETADKFEG--------LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGI 360
Query: 75 HQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQK 116
+G GF+ F E+A A+ MN + KP+ V A ++
Sbjct: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
>gi|225444659|ref|XP_002277008.1| PREDICTED: nucleolysin TIAR isoform 2 [Vitis vinifera]
Length = 426
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 102/206 (49%), Gaps = 41/206 (19%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG + +V+E L+ E+F +GP+ + + + YGF+++ A +I
Sbjct: 55 SVYVGNIHPQVTEPLLQEVFSSTGPLEGCKL----IRKEKSSYGFVDYFDRRSAALSIVT 110
Query: 96 MNMIKLYGKPIRVNK--ASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N L+G+PI+VN ASS +++ NIF+G+L PEV + L+ FS + P
Sbjct: 111 LNGRHLFGQPIKVNWAYASSQREDTSGHYNIFVGDLSPEVTDATLFACFSVY------PS 164
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+ I+ D +M D TG S+GF F+++ + +
Sbjct: 165 CSSGIR-----------------------------DARVMWDQKTGRSRGFGFVSFRNQQ 195
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFK 239
+ ++I+ ++G++L +R I ++A K
Sbjct: 196 EAQSAINDLNGRWLGSRQIRCNWATK 221
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 41/202 (20%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ ++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ DA+ A+
Sbjct: 83 NTSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERAL 142
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+ +N + K R+ + G NIFI NLD +D K L+DTF+AFG IL
Sbjct: 143 EQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSC- 201
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ D + G SKG+ F++Y +
Sbjct: 202 --------------------------------------KVATD-EHGASKGYGFVHYVTG 222
Query: 213 EASDASIDAMHGQYLCNRPISV 234
E+++A+I ++G L ++ + V
Sbjct: 223 ESAEAAIKGVNGMQLNDKVVFV 244
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 117/282 (41%), Gaps = 66/282 (23%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE--------- 87
+Y+ L + + + E+F + GP+ + + D + H+G+GF+ + E
Sbjct: 267 LYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGK-HRGFGFVNYENHESASKAVDAL 325
Query: 88 -DADYAIKIMNMIKLYGKPIR---VNKASSHQKNLDV----GANIFIGNLDPEVDEKLLY 139
D DY ++ + + + R + KA QK G N+++ NLD E D++ L
Sbjct: 326 HDKDYKGNVLYVARAQKRTERDAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEKLQ 385
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ F+ FG I ++M+D + G
Sbjct: 386 NEFTPFGTITSC---------------------------------------KVMKD-EKG 405
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
SKGF F+ ++S + + ++ M+G+ L ++P+ VS A +K+ + ++ L AQ
Sbjct: 406 TSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLAQRKEVR--------KQQLEAQM 457
Query: 260 PLSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPPSGLR 301
R Q+ A P AP PP P+ G PP G R
Sbjct: 458 SQRSQMRSQQIAAAGIPGAPYGAPPNPMYFGGAAAYPPHGGR 499
>gi|293337013|ref|NP_001169661.1| uncharacterized protein LOC100383542 [Zea mays]
gi|224030689|gb|ACN34420.1| unknown [Zea mays]
Length = 442
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 45/212 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L + V E + LF Q PV V + +D ++ GYG++ F ++A A++
Sbjct: 2 ASLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALE 61
Query: 95 IMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
+N L GK IRV N+ S +K+ AN+F+ NL+P +D K LY+ FS+FG IL
Sbjct: 62 ALNFTPLIGKYIRVMFSNRDPSLRKSGR--ANLFVKNLEPNIDSKNLYEIFSSFGAILSC 119
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
++ D G SKG+ F+ Y +
Sbjct: 120 ---------------------------------------KVATD-SAGQSKGYGFVQYET 139
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
E+++A+I+ ++G NR + V ++ +
Sbjct: 140 EESAEAAINGLNGMLANNRKMFVGLHMRRRDR 171
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 130/326 (39%), Gaps = 70/326 (21%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G A ++V L+ + ++E+F G +++ + D Q+ +GYGF+++ EE A+ A
Sbjct: 88 GRANLFVKNLEPNIDSKNLYEIFSSFGAILSCKVATDSAGQS-KGYGFVQYETEESAEAA 146
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI---- 148
I +N + + + V + N++I NL E E L F+ FG I
Sbjct: 147 INGLNGMLANNRKMFVGLHMRRRDREVKFTNVYIKNLPTEFSEDDLRQEFAPFGEITSAV 206
Query: 149 ----------------LQTPK--IMNMIKLYGKPI--------RVNKASSHQKNLDV--- 179
+ P+ I + K GK I R K + L
Sbjct: 207 VMRDADGASKCFGFVNFKKPEFAIEAVEKANGKAIGDKTLYVGRAQKKEERKAELKTRFG 266
Query: 180 -----------GANIFIGNLD--------------------PEIMRDPDTGNSKGFAFIN 208
G N+++ N+D ++M D G SKG F++
Sbjct: 267 RGRDNKVDKPNGINLYLKNIDDGINDEGLKKLFEEFGQVASCKVMVDA-RGRSKGSGFVS 325
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAF-KKDSKGDRHGSAAERLLAAQNPLSQADRP 267
+A+ EA +I+ M+G+ + +P+ V A K++ K A+R LA SQ P
Sbjct: 326 FATAEAGQRAINRMNGRIVGKKPLYVGLAQPKEERKAMLMAHFAQRNLAM--AASQYAGP 383
Query: 268 HQLFADAPPPAPLPPPPPPINIMGLP 293
Q++ P +P P PP + G P
Sbjct: 384 QQVYF-GHPSSPGPIAPPQGAVFGFP 408
>gi|186478580|ref|NP_001117301.1| oligouridylate binding protein 1B [Arabidopsis thaliana]
gi|332191459|gb|AEE29580.1| oligouridylate binding protein 1B [Arabidopsis thaliana]
Length = 416
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 45/212 (21%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG + +V+E L+ E+F +GPV + + + + YGF+ + A AI
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGPVESCKL----IRKEKSSYGFVHYFDRRSAGLAILS 110
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N L+G+PI+VN A + + D + NIF+G+L PEV + +L+ FS +
Sbjct: 111 LNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTC----- 165
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
D +M D TG S+GF F+++ + +
Sbjct: 166 ----------------------------------SDARVMWDQKTGRSRGFGFVSFRNQQ 191
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
+ +ID + G++L +R I ++A K + G+
Sbjct: 192 DAQTAIDEITGKWLGSRQIRCNWATKGATSGE 223
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 31/142 (21%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
I+VG L +V++ +++ F + + D+ T +G+GF+ F ++DA AI +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 97 NMIKLYGKPIRVN-----------KASSHQKN---LDVG-----------------ANIF 125
L + IR N K SS K+ L G ++
Sbjct: 201 TGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGDGKDTTNGEAPENNAQYTTVY 260
Query: 126 IGNLDPEVDEKLLYDTFSAFGV 147
+GNL PEV + L+ F + G
Sbjct: 261 VGNLAPEVSQVDLHRHFHSLGA 282
>gi|255576617|ref|XP_002529199.1| nucleolysin tia-1, putative [Ricinus communis]
gi|223531377|gb|EEF33213.1| nucleolysin tia-1, putative [Ricinus communis]
Length = 422
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 107/231 (46%), Gaps = 46/231 (19%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG + +V+E L+ E+F +GPV + + + + YGFI + A AI
Sbjct: 54 SVYVGNIHTQVTEPLLQEVFASTGPVESCKL----IRKEKSSYGFIHYFDRRSAALAILS 109
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N L+G+PI+VN A + + D NIF+G+L PEV + L+ FS
Sbjct: 110 LNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFS---------- 159
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ D +M D TG S+GF F+++ + +
Sbjct: 160 -----------------------------VYHSCSDARVMWDQKTGRSRGFGFVSFRNQQ 190
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFK-KDSKGDRHGSAAERLLAAQNPLSQ 263
+ ++I+ + G++L +R I ++A K S D+ S A+ ++ N S+
Sbjct: 191 DAQSAINDLTGKWLGSRQIRCNWATKGATSNDDKQSSDAKSVVELTNGSSE 241
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 34/156 (21%)
Query: 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMG 85
G E G I+VG L +V++ ++ F + + D+ T +G+GF+ F
Sbjct: 129 GQREDTSGHYNIFVGDLSPEVTDATLFACFSVYHSCSDARVMWDQKTGRSRGFGFVSFRN 188
Query: 86 EEDADYAIKIMNMIKLYGKPIRVNKAS-----------------------SHQKNLDVGA 122
++DA AI + L + IR N A+ S ++ +
Sbjct: 189 QQDAQSAINDLTGKWLGSRQIRCNWATKGATSNDDKQSSDAKSVVELTNGSSEEGKETAN 248
Query: 123 N-----------IFIGNLDPEVDEKLLYDTFSAFGV 147
N +++GNL PEV + L+ F + G
Sbjct: 249 NDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 284
>gi|224119532|ref|XP_002331184.1| predicted protein [Populus trichocarpa]
gi|222873305|gb|EEF10436.1| predicted protein [Populus trichocarpa]
Length = 426
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 106/231 (45%), Gaps = 46/231 (19%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG + +V+E L+ E+F +GPV + + + YGFI + A AI
Sbjct: 59 SVYVGNIHTQVTEPLLQEVFASTGPVEGCKL----IRKEKSSYGFIHYFDRRAAALAILS 114
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N L+G+PI+VN A + + D NIF+G+L PEV + LY FS
Sbjct: 115 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLYACFS---------- 164
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ D +M D TG S+GF F+++ + +
Sbjct: 165 -----------------------------VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 195
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFK-KDSKGDRHGSAAERLLAAQNPLSQ 263
+ ++I+ + G++L +R I ++A K S D+ S ++ ++ N S+
Sbjct: 196 DAQSAINDLTGKWLGSRQIRCNWAAKGASSNDDKQSSDSKSVVELTNGTSE 246
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 34/156 (21%)
Query: 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMG 85
G E G I+VG L +V++ ++ F + + D+ T +G+GF+ F
Sbjct: 134 GQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 193
Query: 86 EEDADYAIKIMNMIKLYGKPIRVN-----------KASSHQKNLDVGAN----------- 123
++DA AI + L + IR N K SS K++ N
Sbjct: 194 QQDAQSAINDLTGKWLGSRQIRCNWAAKGASSNDDKQSSDSKSVVELTNGTSEDCKEATN 253
Query: 124 ------------IFIGNLDPEVDEKLLYDTFSAFGV 147
+++GNL PEV + L+ F A G
Sbjct: 254 NEAPENNPQYTTVYVGNLAPEVAQPDLHRHFHALGA 289
>gi|410988961|ref|XP_004000741.1| PREDICTED: polyadenylate-binding protein 5 [Felis catus]
Length = 382
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 116/257 (45%), Gaps = 56/257 (21%)
Query: 39 VGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNM 98
VG LD V+E ++++ F +GP+ + +D VT++ GYG++ F DA++A+ MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 99 IKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI--- 154
+ GKP R+ + + G NIFI NLD +D + L+ FSAFG IL +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 155 -----------------------MNMIKLYGKPIRVNK--------ASSHQKNLDVGANI 183
MN ++L + + V + A K+ N+
Sbjct: 142 NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTKDRATFTNV 201
Query: 184 FIGN----LDPE----------------IMRDPDTGNSKGFAFINYASFEASDASIDAMH 223
F+ N +D E ++RD +G SKGF F+ Y + EA+ ++ +H
Sbjct: 202 FVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 224 GQYLCNRPISVSYAFKK 240
G+ + + + V A KK
Sbjct: 261 GKSINGKVLYVGRAQKK 277
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 89/218 (40%), Gaps = 59/218 (27%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++V D + + + E+F GP +V + +D + +G+GF+ + E A A+
Sbjct: 199 TNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVL 257
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDV-----------------GANIFIGNLDPEVDEKL 137
++ + GK + V +A + L G I+I NLD +D++
Sbjct: 258 DLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEK 317
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + FS+FG I + K+M +
Sbjct: 318 LKEEFSSFGSISRA-KVM----------------------------------------VE 336
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235
G KGF + ++SFE + ++D M+G+ + ++P+ V+
Sbjct: 337 VGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVT 374
>gi|18394471|ref|NP_564018.1| oligouridylate binding protein 1B [Arabidopsis thaliana]
gi|9665134|gb|AAF97318.1|AC007843_21 Putative RNA binding protein [Arabidopsis thaliana]
gi|21553830|gb|AAM62923.1| oligouridylate binding protein, putative [Arabidopsis thaliana]
gi|111074422|gb|ABH04584.1| At1g17370 [Arabidopsis thaliana]
gi|332191458|gb|AEE29579.1| oligouridylate binding protein 1B [Arabidopsis thaliana]
Length = 419
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 109/231 (47%), Gaps = 46/231 (19%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG + +V+E L+ E+F +GPV + + + + YGF+ + A AI
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGPVESCKL----IRKEKSSYGFVHYFDRRSAGLAILS 110
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N L+G+PI+VN A + + D + NIF+G+L PEV + +L+ FS +
Sbjct: 111 LNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTC----- 165
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
D +M D TG S+GF F+++ + +
Sbjct: 166 ----------------------------------SDARVMWDQKTGRSRGFGFVSFRNQQ 191
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKG-DRHGSAAERLLAAQNPLSQ 263
+ +ID + G++L +R I ++A K + G D+ S ++ ++ + +S+
Sbjct: 192 DAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSE 242
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 34/145 (23%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
I+VG L +V++ +++ F + + D+ T +G+GF+ F ++DA AI +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 97 NMIKLYGKPIRVN-----------KASSHQKN---LDVGAN------------------- 123
L + IR N K SS K+ L G +
Sbjct: 201 TGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYT 260
Query: 124 -IFIGNLDPEVDEKLLYDTFSAFGV 147
+++GNL PEV + L+ F + G
Sbjct: 261 TVYVGNLAPEVSQVDLHRHFHSLGA 285
>gi|255641747|gb|ACU21144.1| unknown [Glycine max]
Length = 397
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 106/222 (47%), Gaps = 45/222 (20%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG + +V+++L+ ELF +G + + + + YGF+++ A +AI
Sbjct: 47 SVYVGNIHPQVTDSLLQELFSTAGALEGCKL----IRKEKSSYGFVDYFDRSSAAFAIVT 102
Query: 96 MNMIKLYGKPIRVNK--ASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N ++G+PI+VN ASS +++ NIF+G+L PEV + LY FS
Sbjct: 103 LNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFS---------- 152
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ D +M D TG S+GF F+++ + +
Sbjct: 153 -----------------------------VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 183
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLL 255
+ ++I+ + G++L +R I ++A K S D S+ +++
Sbjct: 184 DAQSAINDLTGKWLGSRQIRCNWATKGASASDEKQSSDSKIV 225
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 41/227 (18%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E G I+VG L +V++ ++ F + + D+ T +G+GF+ F ++D
Sbjct: 125 EDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQD 184
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
A AI + L + IR N A+ GA+ DEK D+ ++
Sbjct: 185 AQSAINDLTGKWLGSRQIRCNWATK-------GAS--------ASDEKQSSDS----KIV 225
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPE----------------I 192
++ ++N G+ + +KN +++GNL PE I
Sbjct: 226 VE---LINGSSEEGQ--ETTNDDTPEKNPQY-TTVYVGNLAPEVTSVDLHQHFHSLNAGI 279
Query: 193 MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239
+ D KGF F+ Y++ + +I + + L +PI S+ K
Sbjct: 280 IEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILFGKPIKCSWGSK 326
>gi|449447926|ref|XP_004141717.1| PREDICTED: nucleolysin TIAR-like [Cucumis sativus]
gi|449480481|ref|XP_004155906.1| PREDICTED: nucleolysin TIAR-like [Cucumis sativus]
Length = 422
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 109/246 (44%), Gaps = 45/246 (18%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG + +V+E L+ E+F +G V + + V + YGFI + A AI
Sbjct: 55 SVYVGNVHTQVTEPLLQEVFGSTGLVESCKL----VRKEKSSYGFIHYFDRRSAAMAILS 110
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N L+G+PI+VN A + + D NIF+G+L PEV + L+ FS
Sbjct: 111 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDSTLFACFS---------- 160
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+F D +M D TG S+GF F+++ + +
Sbjct: 161 -----------------------------VFSSCSDARVMWDQKTGRSRGFGFVSFRNQQ 191
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
+ ++I+ + G++L +R I ++A K D S+ + +A S D + +D
Sbjct: 192 DAQSAINDLTGKWLGSRQIRCNWATKGAGSNDDKQSSDVKSIAELTNGSSEDGKETVSSD 251
Query: 274 APPPAP 279
AP P
Sbjct: 252 APENNP 257
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 90/231 (38%), Gaps = 42/231 (18%)
Query: 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMG 85
G E G I+VG L +V+++ ++ F + + D+ T +G+GF+ F
Sbjct: 130 GQREDTSGHFNIFVGDLSPEVTDSTLFACFSVFSSCSDARVMWDQKTGRSRGFGFVSFRN 189
Query: 86 EEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
++DA AI + L + IR N A+ G+N D+K D
Sbjct: 190 QQDAQSAINDLTGKWLGSRQIRCNWATK-----GAGSN----------DDKQSSD----- 229
Query: 146 GVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPE-------------- 191
+ ++ N GK + A + +++GNL PE
Sbjct: 230 --VKSIAELTNGSSEDGKETVSSDAPENNPQY---TTVYVGNLAPEATQVDLHRHFHSLG 284
Query: 192 --IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQ-YLCNRPISVSYAFK 239
++ + KGF F+ Y++ + +I + Q +LC + I S+ K
Sbjct: 285 AGVIEEVRIQRDKGFGFVRYSTHAEAALAIQMGNTQSFLCGKQIKCSWGSK 335
>gi|410076202|ref|XP_003955683.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
gi|372462266|emb|CCF56548.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
Length = 582
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 41/210 (19%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
G +S ++YVG LD VSE L++++F G V ++ + +D +T+T GY ++ F
Sbjct: 32 GQQSDSNSTSLYVGDLDPSVSEALLYDIFSPIGSVTSIRVCRDAITKTSLGYAYVNFADH 91
Query: 87 EDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAF 145
E AI+ +N + G+ R+ + G NIFI NL+ ++D K LYDTFS F
Sbjct: 92 EAGKVAIERLNYTPIKGRLCRIMWSQRDPALRKKGNGNIFIKNLNADIDNKALYDTFSVF 151
Query: 146 GVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFA 205
G IL + +I D + GNSKGF
Sbjct: 152 GNILSS---------------------------------------KIATD-ENGNSKGFG 171
Query: 206 FINYASFEASDASIDAMHGQYLCNRPISVS 235
F+++ A+ +IDA++G L + I V+
Sbjct: 172 FVHFEEEAAAKEAIDALNGMLLNGQEIYVA 201
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 57/185 (30%)
Query: 76 QGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDV--------------- 120
+G+GF+ + EDA A++ +N + G+ + V +A + +
Sbjct: 261 KGFGFVNYENHEDALKAVEELNNTEFKGQELYVGRAQKKYERMQALKQQYEATRLEKMAK 320
Query: 121 --GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLD 178
G N+FI NLD +D++ L + F+ FG I T
Sbjct: 321 YQGVNLFIKNLDDSIDDEKLKEEFAPFGTITST--------------------------- 353
Query: 179 VGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238
++MR + G SKGF F+ ++S E + +I + Q + +P+ V+ A
Sbjct: 354 ------------KVMR-TENGKSKGFGFVCFSSPEEATKAITEKNQQIVAGKPLYVAIAQ 400
Query: 239 KKDSK 243
+K+ +
Sbjct: 401 RKEVR 405
>gi|357113824|ref|XP_003558701.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Brachypodium distachyon]
Length = 418
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 113/237 (47%), Gaps = 46/237 (19%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+++G L E ++ F +G V +V + +++VT +GYGFIEF+ E A+ ++
Sbjct: 18 TLWIGDLQFWADEAYLYNCFAHTGEVQSVKIIRNKVTNLPEGYGFIEFISHEAAEKVLQT 77
Query: 96 MNMIKLYGK--PIRVNKA--SSHQKNLDVG--ANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
N ++ G R+N A SS ++ D G +IF+G+L P+V + LL +TF
Sbjct: 78 YNGAQMPGSEHTFRLNWASFSSGERRPDAGPDHSIFVGDLAPDVTDYLLQETF------- 130
Query: 150 QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINY 209
RVN +S GA +++ DP+TG SKG+ F+ +
Sbjct: 131 ----------------RVNYSSVR------GA---------KVVTDPNTGRSKGYGFVKF 159
Query: 210 ASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAAQNPLSQA 264
A ++ M+G Y RP+ +S A K S G ++G+A AA + QA
Sbjct: 160 ADENEKTRAMSEMNGVYCSTRPMRISAAIPKKSSGSQLQYGTAKAMYPAAAYAVPQA 216
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 92/251 (36%), Gaps = 76/251 (30%)
Query: 34 DATIYVGGLDDKVSETLMWELF-VQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
D +I+VG L V++ L+ E F V V + D T +GYGF++F E + A
Sbjct: 109 DHSIFVGDLAPDVTDYLLQETFRVNYSSVRGAKVVTDPNTGRSKGYGFVKFADENEKTRA 168
Query: 93 IKIMNMIKLYGKPIRVNKA---SSHQKNLDVG---------------------------A 122
+ MN + +P+R++ A S L G
Sbjct: 169 MSEMNGVYCSTRPMRISAAIPKKSSGSQLQYGTAKAMYPAAAYAVPQAQPALPDSDLTNT 228
Query: 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGAN 182
IFIGNLDP E+ L FG ++ +K+ P+
Sbjct: 229 TIFIGNLDPNATEEELRQLCVQFGELI-------YVKI---PV----------------- 261
Query: 183 IFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242
KG F+ YAS +++ ++ +HG + + + +S+ +
Sbjct: 262 ------------------GKGCGFVQYASRASAEEAVQRLHGTMIGQQVVRLSWGRSPAN 303
Query: 243 KGDRHGSAAER 253
K D+ + ++
Sbjct: 304 KQDQSAAWTQQ 314
>gi|431922856|gb|ELK19640.1| Polyadenylate-binding protein 5 [Pteropus alecto]
Length = 373
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 113/248 (45%), Gaps = 47/248 (18%)
Query: 39 VGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNM 98
VG LD V+E ++++ F +GP+ + +D VT++ GYG++ F DA++A+ MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 99 IKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI--- 154
+ GKP R+ + + G NIFI NLD +D + L+ FSAFG IL +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 155 -----------------------MNMIKLYGKPIRVNKASSHQKNLDVGANIFIGN---- 187
MN ++L + + A ++ N+F+ N
Sbjct: 142 NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV-YRAAEVRTRDRATFTNVFVKNFGDD 200
Query: 188 LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPI 232
+D E ++D +G SKGF F+ Y + EA+ ++ +HG+ + + +
Sbjct: 201 MDDEKLKDIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 260
Query: 233 SVSYAFKK 240
V A KK
Sbjct: 261 YVGRAQKK 268
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 90/218 (41%), Gaps = 59/218 (27%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++V D + + + ++F + GP +V + +D + +G+GF+ + E A A+
Sbjct: 190 TNVFVKNFGDDMDDEKLKDIFSEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVL 248
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDV-----------------GANIFIGNLDPEVDEKL 137
++ + GK + V +A + L G ++I NLD +D++
Sbjct: 249 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPVYIKNLDETIDDEK 308
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + FS+FG I + K+M +
Sbjct: 309 LKEEFSSFGSISRA-KVM----------------------------------------VE 327
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235
G KGF + Y+SFE + ++D M+G+ + ++P+ V+
Sbjct: 328 VGQGKGFGVVCYSSFEEATKAVDEMNGRIMGSKPLHVT 365
>gi|296470851|tpg|DAA12966.1| TPA: PABPC1L2B protein-like [Bos taurus]
Length = 489
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 108/221 (48%), Gaps = 45/221 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L +V+E +++E F +GP++++ + +D++T+ GY ++ + DA A++
Sbjct: 291 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 350
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+N + G+P+R+ ++ + VG N+FI NL +D K LY+ FSAFG IL
Sbjct: 351 TLNFDVIKGRPVRIMWSQRDPSLRKSGVG-NVFIKNLGKTIDNKALYNIFSAFGNILSC- 408
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
K + +K KG+ F+++
Sbjct: 409 ----------------KVACDEK------------------------GPKGYGFVHFQKQ 428
Query: 213 EASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
E+++ +IDAM+G +L R I V + K+ + +R A +
Sbjct: 429 ESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 469
Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ L + ++ +F G +++ + D + +GYGF+ F +E A+ A
Sbjct: 377 GVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGPKGYGFVHFQKQESAERA 434
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKN 117
I MN + L + I V + SH++
Sbjct: 435 IDAMNGMFLNYRKIFVGRFKSHKER 459
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 55/259 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+++YVG L V+++ ++E+F Q GPV N+ + +D T+ Y ++ + DA+ A+
Sbjct: 8 SSLYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLNYAYVNYHNPADAERALD 67
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+N + GK R+ ++ + VG NIFI NLD VD K L+DTFSAFG IL
Sbjct: 68 TLNNTLVKGKACRIMWSQRDPSLRKSGVG-NIFIKNLDKSVDHKALFDTFSAFGNILSCK 126
Query: 153 ----------------------------KIMNMI----KLYGKPIRVNKASSHQKNLDVG 180
K+ MI K++ P + +K + L
Sbjct: 127 VVTDETNVSKGFGFVHYESQDSADKAIMKVNGMIINDQKVFVGPFKSSKERGQTQELKY- 185
Query: 181 ANIFIGNLDPEI----MRD---------------PDTGNSKGFAFINYASFEASDASIDA 221
N+++ NL ++ +RD + SKGF F N+ + + + ++A
Sbjct: 186 TNVYVKNLSEDVNEEELRDLLVPYGKITNLTIMSDEKSKSKGFGFANFETPDEAKNCVEA 245
Query: 222 MHGQYLCNRPISVSYAFKK 240
+G+ + I V A KK
Sbjct: 246 ENGKLFHGKVIYVGRAQKK 264
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 56/220 (25%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+YV L + V+E + +L V G + N+ + D +++ +G+GF F ++A ++
Sbjct: 186 TNVYVKNLSEDVNEEELRDLLVPYGKITNLTIMSDEKSKS-KGFGFANFETPDEAKNCVE 244
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDV-------------GANIFIGNLDPEVDEKLLYDT 141
N +GK I V +A QK ++ G N++I N+D +D L T
Sbjct: 245 AENGKLFHGKVIYVGRA---QKKMEREAELKHKFETKYQGVNLYIKNIDDSIDSDKLRST 301
Query: 142 FSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201
F+A+G I ++MRD + +S
Sbjct: 302 FAAYGTITSA---------------------------------------KVMRDDKSTSS 322
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
KGF F+ Y + + + ++ MHG+ + N+P+ V++A +K+
Sbjct: 323 KGFGFVCYTTPDEASKAVAEMHGRMVGNKPLYVAFAQRKE 362
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 21 QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGF 80
+ +L+ E+ +Y+ +DD + + F G + + + +D + + +G+GF
Sbjct: 268 EAELKHKFETKYQGVNLYIKNIDDSIDSDKLRSTFAAYGTITSAKVMRDDKSTSSKGFGF 327
Query: 81 IEFMGEEDADYAIKIMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGN 128
+ + ++A A+ M+ + KP+ V + +++L+ N F GN
Sbjct: 328 VCYTTPDEASKAVAEMHGRMVGNKPLYVAFAQRKEIRRQHLEAQHNKFKGN 378
>gi|356565743|ref|XP_003551097.1| PREDICTED: nucleolysin TIAR-like [Glycine max]
Length = 411
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 110/246 (44%), Gaps = 45/246 (18%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG + +V+++L+ ELF +G + + + + YGF+++ A +AI
Sbjct: 47 SVYVGNIHPQVTDSLLQELFSTAGALEGCKL----IRKEKSSYGFVDYFDRSSAAFAIVT 102
Query: 96 MNMIKLYGKPIRVNK--ASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N ++G+PI+VN ASS +++ NIF+G+L PEV + LY FS
Sbjct: 103 LNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFS---------- 152
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ D +M D TG S+GF F+++ + +
Sbjct: 153 -----------------------------VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 183
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
+ ++I+ + G++L +R I ++A K S D ++ R + S D D
Sbjct: 184 DAQSAINDLTGKWLGSRQIRCNWATKGASASDEKQTSDSRSVVELTNGSSEDGQETTNDD 243
Query: 274 APPPAP 279
P P
Sbjct: 244 TPEKNP 249
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 41/227 (18%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E G I+VG L +V++ ++ F + + D+ T +G+GF+ F ++D
Sbjct: 125 EDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQD 184
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
A AI + L + IR N A+ GA+ DEK D+ S
Sbjct: 185 AQSAINDLTGKWLGSRQIRCNWATK-------GAS--------ASDEKQTSDSRSVV--- 226
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI---------------- 192
++ N G+ + +KN +++GNL PE+
Sbjct: 227 ----ELTNGSSEDGQ--ETTNDDTPEKNPQY-TTVYVGNLAPEVTSVDLHQHFHSLNAGT 279
Query: 193 MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239
+ D KGF F+ Y++ + +I + + L +PI S+ K
Sbjct: 280 IEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILFGKPIKCSWGSK 326
>gi|426396432|ref|XP_004064447.1| PREDICTED: uncharacterized protein LOC101125114 [Gorilla gorilla
gorilla]
Length = 533
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 107/221 (48%), Gaps = 45/221 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L +V+E +++E F +GP++++ + +D++T+ GY ++ + DA A++
Sbjct: 335 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 394
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+N + G+P+R+ ++ + VG N+FI NL +D K LY+ FSAFG IL
Sbjct: 395 TLNFDVIKGRPVRIMWSQRDPSLRKSGVG-NVFIKNLGKTIDNKALYNIFSAFGNILSC- 452
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
K + +K KG+ F+++
Sbjct: 453 ----------------KVACDEK------------------------GPKGYGFVHFQKQ 472
Query: 213 EASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
E+++ +ID M+G +L R I V + K+ + +R A +
Sbjct: 473 ESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 513
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ L + ++ +F G +++ + D + +GYGF+ F +E A+ A
Sbjct: 421 GVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDE--KGPKGYGFVHFQKQESAERA 478
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKN 117
I +MN + L + I V + SH++
Sbjct: 479 IDVMNGMFLNYRKIFVGRFKSHKER 503
>gi|356547954|ref|XP_003542369.1| PREDICTED: nucleolysin TIAR-like [Glycine max]
Length = 410
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 106/222 (47%), Gaps = 45/222 (20%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG + +V+++L+ ELF +G + + + + YGF+++ A +AI
Sbjct: 47 SVYVGNIHPQVTDSLLQELFSTAGALEGCKL----IRKEKSSYGFVDYFDRSSAAFAIVT 102
Query: 96 MNMIKLYGKPIRVNK--ASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N ++G+PI+VN ASS +++ NIF+G+L PEV + LY FS
Sbjct: 103 LNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFS---------- 152
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
++ D +M D TG S+GF F+++ + +
Sbjct: 153 -----------------------------VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 183
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLL 255
+ ++I+ + G++L +R I ++A K S D S+ +++
Sbjct: 184 DAQSAINDLTGKWLGSRQIRCNWATKGASASDEKQSSDSKIV 225
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 41/227 (18%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E G I+VG L +V++ ++ F + + D+ T +G+GF+ F ++D
Sbjct: 125 EDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQD 184
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
A AI + L + IR N A+ GA+ DEK D+ ++
Sbjct: 185 AQSAINDLTGKWLGSRQIRCNWATK-------GAS--------ASDEKQSSDS----KIV 225
Query: 149 LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPE----------------I 192
++ ++N G+ + +KN +++GNL PE I
Sbjct: 226 VE---LINGSSEEGQ--ETTNDDTPEKNPQY-TTVYVGNLAPEVTSVDLHQHFHSLNAGI 279
Query: 193 MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239
+ D KGF F+ Y++ + +I + + L +PI S+ K
Sbjct: 280 IEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILFGKPIKCSWGSK 326
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 120/271 (44%), Gaps = 60/271 (22%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ +A++YVG LD ++E L++++F GP+ ++ + +D VT+ GY ++ + E
Sbjct: 47 NNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKK 106
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
AI+ +N ++ G+P R+ + G+ NIFI NL P +D K L++TFS FG +L
Sbjct: 107 AIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLS 166
Query: 151 TP--------------------------------KIMNMIKLYG-----KPIRVNKASSH 173
+MN +++Y K R++K
Sbjct: 167 CKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEA 226
Query: 174 QKNLDVGANIFIGNLDPEI-------------------MRDPDTGNSKGFAFINYASFEA 214
+ N NI++ N+D E + G KGF F+N+ A
Sbjct: 227 KANF---TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNA 283
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
+ +++ ++G+ ++ + V A KK + +
Sbjct: 284 AAKAVEELNGKEFKSQALYVGRAQKKYERAE 314
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 105/257 (40%), Gaps = 63/257 (24%)
Query: 4 GREIQAGISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVN 63
G E+ + P +S KLE E+ IYV +D + ++ +LF Q G +V+
Sbjct: 205 GLEVYVAMHVPKKDRIS--KLE---EAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVS 259
Query: 64 VHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLD---- 119
+ KD +G+GF+ F+ A A++ +N + + + V +A + +
Sbjct: 260 AALEKD-AEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKK 318
Query: 120 -------------VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIR 166
G N+FI NLD +D++ L + F+ +G I
Sbjct: 319 QYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSA--------------- 363
Query: 167 VNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQY 226
+MRD + GNSKGF F+ ++S E + ++ + Q
Sbjct: 364 ------------------------RVMRDQE-GNSKGFGFVCFSSPEEATKAMTEKNQQI 398
Query: 227 LCNRPISVSYAFKKDSK 243
+ +P+ V+ A +KD +
Sbjct: 399 VAGKPLYVAIAQRKDVR 415
>gi|365983576|ref|XP_003668621.1| hypothetical protein NDAI_0B03440 [Naumovozyma dairenensis CBS 421]
gi|343767388|emb|CCD23378.1| hypothetical protein NDAI_0B03440 [Naumovozyma dairenensis CBS 421]
Length = 499
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 105/218 (48%), Gaps = 44/218 (20%)
Query: 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMG 85
GG E+ D +YVG LD ++E L+ + F G + +V + D+ Q + Y F+E++
Sbjct: 80 GGRETSD--RVLYVGNLDKSINEDLLKQYFQVGGQITDVKIMVDKKNQ-NVNYAFVEYLK 136
Query: 86 EEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFS 143
DA+ A++ +N I++ K I++N A Q+NL+ N+F+G+L+ +VD++ L F
Sbjct: 137 SHDANVALQTLNGIQIENKIIKINWAFQSQQNLNSNDTFNLFVGDLNIDVDDETLSSNFK 196
Query: 144 AFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKG 203
F +Q +M D T S+G
Sbjct: 197 NFPSYIQA---------------------------------------HVMWDMQTSRSRG 217
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
+ F+++A + + ++D M G+ + RPI +++A K++
Sbjct: 218 YGFVSFADRDQAQNAMDTMQGKEINGRPIRINWATKRE 255
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 106/220 (48%), Gaps = 43/220 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F G ++++ + + +T++ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLHSDVTEAMLFEKFSTVGAILSIRVCRHVITRSSLGYAYVNFQNIADAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN L G P+R+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 62 TMNFDILKGHPMRIMWSQRDPSLRKSGVG-NVFIKNLDRSIDNKAMYDTFSAFGNILSC- 119
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ +D +TGNSKG+ F+++ +
Sbjct: 120 --------------------------------------KVAQD-ETGNSKGYGFVHFETK 140
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
+++ SI+ ++G L + + V ++ + G A+
Sbjct: 141 QSATQSIEKVNGMLLNGKKVFVGRFVGRNDREKELGQRAK 180
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 124/293 (42%), Gaps = 74/293 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + M++ F G +++ + +D T +GYGF+ F ++ A +
Sbjct: 88 GVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDE-TGNSKGYGFVHFETKQSATQS 146
Query: 93 IKIMNMIKLYGKPIRVNK---ASSHQKNLDVGA----NIFIGNLDPEVDEKLLYDTFSAF 145
I+ +N + L GK + V + + +K L A N++I N+D V+EK L++ F +
Sbjct: 147 IEKVNGMLLNGKKVFVGRFVGRNDREKELGQRAKLYTNVYIKNIDENVNEKELFEMFKKY 206
Query: 146 GVILQTPKIM-----------------------NMIKLYGKPI---------RVNKASSH 173
G I + K+M + +L+GK R K +
Sbjct: 207 GTIT-SCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQKKTER 265
Query: 174 QKNLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNS 201
Q+ L G N+++ NLD I +R D G S
Sbjct: 266 QQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDDERLRREFSAFGTIKSAKVMMDDGRS 325
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA-FKKDSKGDRHGSAAER 253
KGF F+ ++S E + ++ M+G+ + +P+ V+ A KKD K ++R
Sbjct: 326 KGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVTLAQRKKDRKAHLDSQYSQR 378
>gi|146415246|ref|XP_001483593.1| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 124/283 (43%), Gaps = 63/283 (22%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YVG L+ V+E L++E+F G V ++ + +D VT+ GY ++ F D AI+ +
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 97 NMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
N + G+P R+ + S ++N D NIFI NL P +D K L+DTFSAFG IL
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGD--GNIFIKNLHPAIDNKALHDTFSAFGRILSCKV 177
Query: 154 IMNMI---KLYG------------KPIRVNKASSHQKNLDVG------------------ 180
+ + K +G VN + + + VG
Sbjct: 178 ATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKAN 237
Query: 181 -ANIFIGNLDPEI-------------------MRDPDTGNSKGFAFINYASFEASDASID 220
N+++ NL PE+ + G S+GF F+N+ + E++ ++
Sbjct: 238 FTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVK 297
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGDR-----HGSAAERLLAAQ 258
M+ + + + + V A KK + D + E+LL Q
Sbjct: 298 EMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLLKYQ 340
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 118/299 (39%), Gaps = 75/299 (25%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+YV L +V E+F GPV +VH+ D+ ++ +G+GF+ F E A A+K
Sbjct: 239 TNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKS-RGFGFVNFENHESALNAVK 297
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLD-----------------VGANIFIGNLDPEVDEKL 137
MN ++ G+ + V +A ++ LD G N+F+ NLD +D +
Sbjct: 298 EMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLLKYQGVNLFVKNLDDSIDSEK 357
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + F FG I +M D D
Sbjct: 358 LEEEFKPFGTITSA---------------------------------------RVMVD-D 377
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR--HGSAAERLL 255
G SKGF F+ ++S E + +I M+ + + +P+ V+ A +KD + + A +
Sbjct: 378 AGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVRRSQLEQQIQARNQM 437
Query: 256 AAQNPLSQADRPHQ-----LFADAP---PP-------APLPPPPPPINIMGLPPPPPSG 299
QN + A P Q + P PP P PP P + G PPP G
Sbjct: 438 RMQNAAAAAGMPGQFMLPMFYGQQPGFFPPNGRGGAQGPFPPNPQMMMPRGGQMPPPQG 496
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 46/213 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E+ ++E+F G V + + +D V++ GY ++ F D + A++
Sbjct: 47 ASLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADGEKALE 106
Query: 95 IMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
+N + GK R+ + S ++N NIFI NL P +D K L+DTFSAFG IL
Sbjct: 107 ELNYTPIKGKACRIMWSQRDPSLRRN--GSGNIFIKNLHPAIDNKTLHDTFSAFGKILSC 164
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
+I D + GNSKGF F++Y
Sbjct: 165 ---------------------------------------KIATD-ENGNSKGFGFVHYEE 184
Query: 212 FEASDASIDAMHGQYLCNRPISVS-YAFKKDSK 243
E++ A+I+ ++G L + + V + KKD +
Sbjct: 185 SESAKAAIENVNGMLLNDHEVYVGPHLAKKDRQ 217
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 58/226 (25%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+YV ++ E + E F G + ++ + KD ++ +G+GF+ F EDA A++
Sbjct: 228 TNVYVKNINLNWDEDKLRETFSPFGTISSIFLSKDESGKS-RGFGFVNFEKHEDAVKAVE 286
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDV-----------------GANIFIGNLDPEVDEKL 137
+N + G+ + V +A + ++ G N+F+ NLD +D+
Sbjct: 287 ELNNKDIDGQKLYVGRAQKKSERMESLKHQYEAARQEQLNKYQGYNLFVKNLDDSIDDAK 346
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + F +G I + K+M LD D
Sbjct: 347 LEEEFKPYGTIT-SAKVM---------------------LD------------------D 366
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ Y+S E + +I MH + + +P+ V+ A +K+ +
Sbjct: 367 AGKSKGFGFVCYSSPEEATKAITEMHQRMVAGKPLYVALAQRKEVR 412
>gi|444316792|ref|XP_004179053.1| hypothetical protein TBLA_0B07170 [Tetrapisispora blattae CBS 6284]
gi|387512093|emb|CCH59534.1| hypothetical protein TBLA_0B07170 [Tetrapisispora blattae CBS 6284]
Length = 470
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 123/273 (45%), Gaps = 46/273 (16%)
Query: 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
+ GG E+ D +YVG LD ++E + + F GP+ NV + D+ + Y F+E+
Sbjct: 74 IRGGRETSD--KILYVGNLDKSINEDSLKQYFQVGGPIANVKIIVDK-NNKYCNYAFVEY 130
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKA-SSHQKNLDVGANIFIGNLDPEVDEKLLYDTF 142
+ DA+ A++ +N + K +++N A S Q + D N+FIG+L+ +V+++ L F
Sbjct: 131 LKHHDANVALQTLNGKHIEKKIVKINWAFQSQQSSNDDTFNLFIGDLNIDVNDESLTAAF 190
Query: 143 SAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSK 202
F +Q +M D TG S+
Sbjct: 191 KDFPSFVQA---------------------------------------HVMWDMQTGRSR 211
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLS 262
G+ F ++++ + ++D M G+ L RPI +++A K+D++ + S QN +
Sbjct: 212 GYGFASFSTQNDAQLAMDQMQGKELNGRPIRINWASKRDNQQGQQQSHNNG--GFQNRRN 269
Query: 263 QADRPHQLFADAPPPAPLPPPPPPINIMGLPPP 295
+ +F PPPP + MG+PPP
Sbjct: 270 NNNNNPNMFGSRNTNQMQGPPPPNMQ-MGVPPP 301
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,324,241,175
Number of Sequences: 23463169
Number of extensions: 247153813
Number of successful extensions: 2512187
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 14235
Number of HSP's successfully gapped in prelim test: 8573
Number of HSP's that attempted gapping in prelim test: 2236182
Number of HSP's gapped (non-prelim): 213797
length of query: 305
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 163
effective length of database: 9,027,425,369
effective search space: 1471470335147
effective search space used: 1471470335147
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)