BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3016
(305 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 361 bits (926), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 226 bits (577), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 360 bits (925), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 226 bits (577), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 360 bits (925), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 177/238 (74%), Positives = 194/238 (81%), Gaps = 38/238 (15%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRDPDTGNSKG+AFIN+ASF+
Sbjct: 132 --------------------------------------IMRDPDTGNSKGYAFINFASFD 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLF 271
ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGSAAERLLAAQNPLSQADRPHQLF
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
Score = 226 bits (577), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 123/207 (59%), Positives = 142/207 (68%), Gaps = 51/207 (24%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A +++G LD +V E LL++ F G ++ T
Sbjct: 8 ERNQD--ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI-------------- 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query: 193 -------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
MRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+
Sbjct: 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFA 272
RHGSAAERLLAAQNPLSQADRPHQLFA
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFA 212
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49
PE=1 SV=2
Length = 388
Score = 343 bits (879), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 173/281 (61%), Positives = 205/281 (72%), Gaps = 49/281 (17%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLD+KVSE+++WEL VQ+GPVV+V+MPKDRVT HQG+GF+EFMGEEDADYAI
Sbjct: 12 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+NMIKLYGKPI+VNKAS+H+KN+DVGANIF+GNLDPEVDEKLLYDTFSAFGVILQ PK
Sbjct: 72 KILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
IMRD D+G SKGFAFIN+ASFE
Sbjct: 132 --------------------------------------IMRDVDSGTSKGFAFINFASFE 153
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFAD 273
ASD +++AM+GQ+LCNR I+VSYAFK+DSKG+RHG+AAER+LAAQNPL DRPHQ+F+D
Sbjct: 154 ASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSD 213
Query: 274 AP--PPAPLPPPPPPINIM---------GLPPPPPSGLRAS 303
P PA P P ++ G PPP G+ S
Sbjct: 214 VPLGVPANTPLAMPGVHAAIAAHATGRPGYQPPPLMGMAQS 254
Score = 181 bits (459), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 136/261 (52%), Gaps = 102/261 (39%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------- 152
++N D A I++G LD +V E +L++ G ++
Sbjct: 8 ERNQD--ATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEE 65
Query: 153 ------KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPE--------------- 191
KI+NMIKLYGKPI+VNKAS+H+KN+DVGANIF+GNLDPE
Sbjct: 66 DADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGV 125
Query: 192 ------IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
IMRD D+G SKGFAFIN+ASFEASD +++AM+GQ+LCNR I+VSYAFK+DSKG+
Sbjct: 126 ILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGE 185
Query: 246 RHGSAAERLLAAQNPLSQADRPHQLFADAP------------------------------ 275
RHG+AAER+LAAQNPL DRPHQ+F+D P
Sbjct: 186 RHGTAAERMLAAQNPLFPKDRPHQVFSDVPLGVPANTPLAMPGVHAAIAAHATGRPGYQP 245
Query: 275 --------------------- 275
Sbjct: 246 PPLMGMAQSGYQGQYPPVPPP 266
>sp|O14102|SAP49_SCHPO Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sap49 PE=3 SV=2
Length = 335
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 150/221 (67%), Gaps = 40/221 (18%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E + DATIY+G LD+KV++++++EL +Q+GPVVN+H+P+DRV +H G+GF EF+ E+D
Sbjct: 5 EDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQD 64
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQK-NLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
+YA +I+N +KL+GKPIRVN+AS + N +GAN+F+GNLDP VDE++LYDTFSA G
Sbjct: 65 VEYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQ 124
Query: 148 ILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFI 207
+++ P++ RD + G SKG+ F+
Sbjct: 125 LVKA--------------------------------------PQVARD-ENGRSKGYGFV 145
Query: 208 NYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
+Y SFE +DA+I+AM+ Q+L N+PI+VSYAFK++ KG+RHG
Sbjct: 146 SYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHG 186
>sp|Q55GD6|SF3B4_DICDI Splicing factor 3B subunit 4 OS=Dictyostelium discoideum GN=sf3b4
PE=3 SV=1
Length = 359
Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 146/224 (65%), Gaps = 42/224 (18%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+A + + LD V+E+L+ ELF+Q+ PVV V +PKD++TQ H G ++EF DA+YA+
Sbjct: 12 EACLLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYAL 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K+M ++L+ K I++ K + + +D+GAN+FIGNLD +VDE++L+DTFS FG I+ TPK
Sbjct: 72 KVMKFVRLFNKEIKIKKENKDK--VDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPK 129
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+MRD + G SKGFAFIN+ SFE
Sbjct: 130 --------------------------------------VMRD-ENGVSKGFAFINFDSFE 150
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAA 257
ASDA+I+AM+ Q+LCN+PISV+YA KKDS +RHGS+AER++AA
Sbjct: 151 ASDAAIEAMNSQFLCNKPISVTYARKKDS-NERHGSSAERIIAA 193
>sp|Q99181|HSH49_YEAST Protein HSH49 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=HSH49 PE=1 SV=1
Length = 213
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 121/239 (50%), Gaps = 53/239 (22%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
S D T+YVG +D ++++ ++ELF+Q PV+ + PKD+V Q +QGY FIEF + DA
Sbjct: 4 SADSGNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDA 63
Query: 90 DYAIKIM-NMIKLYGKPIRVNKASSHQKNLDVGANI-----------FIGNLDPEVDEKL 137
YAIKIM N ++LY + I+V + ++ ++ +NI FI NL +D
Sbjct: 64 QYAIKIMNNTVRLYDRLIKVRQVTNSTGTTNLPSNISKDMILPIAKLFIKNLADSIDSDQ 123
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L F+ FG +++ P+I ++ N
Sbjct: 124 LVKIFNKFGKLIREPEIF----------------------------YLSN---------- 145
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD-RHGSAAERLL 255
G K A++ + FE +D +I +++ Q + N I+V YAFK++ KG+ ++G +RLL
Sbjct: 146 -GKLKC-AYVYFEDFEKADLAIKSLNNQLVANNRITVDYAFKENGKGNAKYGDDVDRLL 202
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N E +MRDP+ G SKGF F++Y E ++ ++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 249 EEMNGKEISGKIIFVGRAQKK 269
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D +GY F+ F +E AD A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N EVD++ L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN ++ GK I R K Q
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 176 NLDV--------------GANIFIGNLDPEI----MRDP--------------DTGNSKG 203
L G N++I NLD I +R + G SKG
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L +V E +LY+ FS G +L Q P
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKPIR+ ++ + VG N+FI NLD I + D
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + EA+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 131/280 (46%), Gaps = 58/280 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 51 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 110
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 111 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 170
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 171 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKAN 230
Query: 182 --NIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASDASI 219
NI+I N+DP++ RDP+ G S+GF F+NY++ E++ A++
Sbjct: 231 FTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPE-GKSRGFGFVNYSTHESAQAAV 289
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
D MH + + + + V A KK + + R A RL A
Sbjct: 290 DEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKA 329
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 104/242 (42%), Gaps = 41/242 (16%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IY+ +D V+E ++F Q G + + + +D ++ +G+GF+ + E A A+ M
Sbjct: 234 IYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKS-RGFGFVNYSTHESAQAAVDEM 292
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
+ ++ + + V +A H++ ++ G N+++ NL +VD++ L
Sbjct: 293 HDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 352
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNL----------- 188
+ F +G I + K+M P + +K +V
Sbjct: 353 ELFGPYGTIT-SAKVMRD----STPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKE 407
Query: 189 DPEIMRDPDT-------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
E +D G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD
Sbjct: 408 SDEEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKD 467
Query: 242 SK 243
+
Sbjct: 468 VR 469
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ F +E A+ A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 176 NLDV--------------GANIFIGNLDP----EIMRDP--------------DTGNSKG 203
L G N+++ NLD E +R + G SKG
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ F +E A+ A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 176 NLDV--------------GANIFIGNLDP----EIMRDP--------------DTGNSKG 203
L G N+++ NLD E +R + G SKG
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 124/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG-NVFIKNLDESIDNKALYDTFSAFGNILSCK 129
Query: 153 --------------------------KIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V S ++ L+ GA
Sbjct: 130 VVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D DTG S+GF F+NY + E + ++
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
M+G+ + R I V A K+
Sbjct: 249 SEMNGKEVNGRMIYVGRAQKR 269
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 119/285 (41%), Gaps = 71/285 (24%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G +++ LD+ + +++ F G +++ + D +GYGF+ F +E
Sbjct: 92 GLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A+ AI+ MN + L + + V S ++ L+ GA N++I N ++D+K L +
Sbjct: 150 AANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLRE 209
Query: 141 TFSAFGVILQTPKIM---------------------------NMIKLYGKPIRVNKASSH 173
FSAFG L +M N ++ G+ I V +A
Sbjct: 210 IFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Query: 174 -----------------QKNLDVGANIFIGNLDPEIMRD------------------PDT 198
+ N G N+++ NLD I D +
Sbjct: 270 IERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG 329
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D ++G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ L + I V A KK
Sbjct: 249 DEMNGKELNGKQIYVGRAQKK 269
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ELF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KEFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKP+R+ ++ + VG NIFI NLD I + D
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 126/261 (48%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D ++G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ L + I V A KK
Sbjct: 249 DEMNGKELNGKQIYVGRAQKK 269
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 59/224 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ELF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N +L GK I R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS FG I +M + G
Sbjct: 312 KEFSPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKP+R+ ++ + VG NIFI NLD I + D
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +I+ M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 126/260 (48%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L +E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ F +E A+ A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN + L + + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 176 NLDV--------------GANIFIGNLDP----EIMRDP--------------DTGNSKG 203
L G N+++ NLD E +R + G SKG
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 125/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D D G S+GF F+++ E + ++
Sbjct: 190 FTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ L + I V A KK
Sbjct: 249 DDMNGKDLNGKAIFVGRAQKK 269
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 135/344 (39%), Gaps = 87/344 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ F +E A+ A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I MN + L + + V + S ++ ++GA N++I N ++D++ L + F +
Sbjct: 155 IDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQY 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN L GK I R K Q
Sbjct: 215 GAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQT 274
Query: 176 NLDV--------------GANIFIGNLDP----EIMRDPDT--------------GNSKG 203
L G N+++ NLD E +R T G SKG
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + + + +A+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPNP 394
Query: 264 ADRPHQLFADAPPP-----APLPPPP------PPINIMGLPPPP 296
P+Q PPP A +PP PP I L P P
Sbjct: 395 VINPYQ-----PPPSSYFMAAIPPAQNRAAYYPPGQIAQLRPSP 433
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN + GKP+R+ ++ + VG NIFI NLD I + D
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +ID M+G L +R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 125/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+P+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KI--------------------------MNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D D G SKGF F+++ E + ++
Sbjct: 190 FTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
D M+G+ + + + V A KK
Sbjct: 249 DEMNGKDMNGKSMFVGRAQKK 269
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 114/288 (39%), Gaps = 75/288 (26%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D +++ + E+F + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N + GK + R K Q L G N+++ NLD +D++ L
Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
F FG I +M + G
Sbjct: 312 KEFLPFGTITSAKVMM-----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + + + +A+
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVR 390
Query: 260 PLSQADRPHQLFADAPPP-----APLPPPP------PPINIMGLPPPP 296
+ P+Q PPP A +PP PP I L P P
Sbjct: 391 VPNPVINPYQ-----PPPSSYFMAAIPPAQNRAAYYPPGQIAQLRPSP 433
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 108 bits (269), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 128/260 (49%), Gaps = 55/260 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T Y ++ F +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--- 149
MN + GKP+R+ ++ + VG NIF+ NLD ++ K LYDT SAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ K MN + L G+ + V + S ++ ++GA
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
Query: 182 --NIFIGN----LDPEIMRD---------------PDTGNSKGFAFINYASFEASDASID 220
N++I N +D E ++D ++G SKGF F+++ E + ++D
Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 221 AMHGQYLCNRPISVSYAFKK 240
M+G+ L + I V A KK
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 71/280 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I+V LD ++ +++ G +++ ++ D +GYGF+ F E A+ A
Sbjct: 97 GVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERA 154
Query: 93 IKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
IK MN + L G+ + V + S ++ ++GA N++I N ++D++ L D F F
Sbjct: 155 IKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 146 GVILQTPKI---------------------------MNMIKLYGKPI---RVNKASSHQK 175
G L + MN +L GK I R K Q
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 176 NLDVG--------------ANIFIGNL----DPEIMRDP--------------DTGNSKG 203
L N+++ NL D E +R + G SKG
Sbjct: 275 ELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKG 334
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 50/180 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q K
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEIMRDP--------------- 196
MN + GKP+R+ ++ + VG NIF+ NLD I
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV-SYAFKKDSKGDRHGSAAE 252
D SKG+ F+++ + EA++ +I M+G L R + V + +K+ + + A E
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 107 bits (268), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 126/264 (47%), Gaps = 54/264 (20%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G+ ++YVG LD V+++ +++ F Q G VV V + +D VT+ GYG++ F +DA A
Sbjct: 34 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
I+ +N I LYGKPIRV + GA NIFI NLD +D K L+DTFS+FG I+
Sbjct: 94 IQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSC 153
Query: 152 PKIMN---MIKLYGKPIRVNKASSHQ------------KNLDVG---------------- 180
++ K YG N+ S+ + K + VG
Sbjct: 154 KVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTK 213
Query: 181 -ANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N+++ NL +M+D + G SKGF F+N+ + + + ++
Sbjct: 214 FTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAV 272
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
++++G ++ V A KK +
Sbjct: 273 ESLNGHKFDDKEWYVGRAQKKSER 296
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 115/276 (41%), Gaps = 69/276 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV L + ++ + F + G + + + KD ++ +G+GF+ F +DA A++ +
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKS-KGFGFVNFENADDAARAVESL 275
Query: 97 NMIKLYGKPIRVNKASS-----------HQKNLDVGA------NIFIGNLDPEVDEKLLY 139
N K K V +A +++NL A N+++ NLDP + ++ L
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 335
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ FS FG + + ++MRDP+ G
Sbjct: 336 EIFSPFGTVTSS---------------------------------------KVMRDPN-G 355
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLL-AAQ 258
SKG F+ +A+ E + ++ + G+ + ++P+ V+ A +K+ + R + ++ A
Sbjct: 356 TSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAM 415
Query: 259 NPLSQADRP----------HQLFADAPPPAPLPPPP 284
P P Q+F PPA +PP P
Sbjct: 416 QPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQP 451
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+ +YV LD +S+ + E+F G V + + +D T +G GF+ F E+A A+
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMS 376
Query: 95 IMNMIKLYGKPIRV 108
++ + KP+ V
Sbjct: 377 QLSGKMIESKPLYV 390
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 123/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++Y+G L V+E +++E F +GP++++ + +D T+ Y +I F DA+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG-NVFIKNLDESIDNKALYDTFSAFGNILSCK 129
Query: 153 --------------------------KIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V S ++ L+ GA
Sbjct: 130 VVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D D+G S+GF F+NY + E + ++
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
M+G+ + R I V A K+
Sbjct: 249 SEMNGKEVNGRMIYVGRAQKR 269
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 147/364 (40%), Gaps = 91/364 (25%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G +++ LD+ + +++ F G +++ + D +GYGF+ F E
Sbjct: 92 GLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A+ AI+ MN + L + + V S ++ L+ GA N++I N ++D+K L +
Sbjct: 150 AANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLRE 209
Query: 141 TFSAFGVILQTPKIMN----------------------MIKLYGKPI------------R 166
FSAFG L +M+ + ++ GK + R
Sbjct: 210 IFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Query: 167 VNKASSHQKNLDV----------GANIFIGNLDPEIMRD------------------PDT 198
+ + S ++ + G N+++ NLD I D +
Sbjct: 270 IERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG 329
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK----GDRHGSAAERL 254
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + +++ +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATM 389
Query: 255 LAAQNPL-------------SQADRPHQLFADAPPPAPLPPPPPPINIMGLPP---PPPS 298
A PL + P++ F P AP+ P P + PP PP
Sbjct: 390 RAMPGPLLGSFQQPANYFLSAMPQPPNRTFYSPNPVAPVRPAPQWASHQSRPPQYQPPTP 449
Query: 299 GLRA 302
+RA
Sbjct: 450 LMRA 453
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 119/263 (45%), Gaps = 54/263 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF GPV ++ + +D VT+ GY ++ F ED + A+
Sbjct: 80 ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + G+P R+ + +G N+FI NLDP +D K L+DTFSAFG IL
Sbjct: 140 ELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKV 199
Query: 154 IMNMI---KLYG------------------------KPIRV-NKASSHQKNLDVGA---- 181
++ + K YG K + V + S ++ V A
Sbjct: 200 AVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKAN 259
Query: 182 --NIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
N++I NLD EI +GF F+NYA+ E + ++D
Sbjct: 260 FTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVD 319
Query: 221 AMHGQYLCNRPISVSYAFKKDSK 243
++ + + + V A KK +
Sbjct: 320 ELNDKEYKGKKLYVGRAQKKHER 342
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 58/224 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ LD +++E +LF Q G + ++ + KD+ +G+GF+ + E A A+ +
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDEL 321
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N + GK + V +A H++ ++ G N+FI NL EVD++ L
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FSAFG I +IM D + G
Sbjct: 382 AEFSAFGTITSA---------------------------------------KIMTD-EQG 401
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ Y + E ++ ++ M+ + L +P+ V+ A +K+ +
Sbjct: 402 KSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVR 445
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 124/261 (47%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++Y+G L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG-NVFIKNLDDSIDNKALYDTFSAFGDILSCK 129
Query: 153 --------------------------KIMNMIKLYGKPIRVNK-ASSHQKNLDVGA---- 181
+ MN + L + + V S ++ L+ GA
Sbjct: 130 VVCDEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 182 --NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
N++I N L ++M D ++G S+GF F+NY + E + ++
Sbjct: 190 FTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAV 248
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
M+G+ + R + V A K+
Sbjct: 249 TEMNGKEVNGRMVYVGRAQKR 269
Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 119/285 (41%), Gaps = 71/285 (24%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G G +++ LDD + +++ F G +++ + D +GYGF+ F +E
Sbjct: 92 GLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGS--RGYGFVHFETQE 149
Query: 88 DADYAIKIMNMIKLYGKPIRVNK-ASSHQKNLDVGA------NIFIGNLDPEVDEKLLYD 140
A+ AI+ MN + L + + V S ++ L+ GA N++I N ++D+K L +
Sbjct: 150 AANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKE 209
Query: 141 TFSAFGVILQTPKIMN----------------------MIKLYGKPI--------RVNKA 170
FSAFG L +M+ + ++ GK + R K
Sbjct: 210 IFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKR 269
Query: 171 SSHQKNLDV--------------GANIFIGNLDPEIMRD------------------PDT 198
Q L G N+++ NLD I D +
Sbjct: 270 IERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG 329
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 127/279 (45%), Gaps = 56/279 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 48 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 107
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 108 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKV 167
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 168 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 227
Query: 182 --NIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
N++I NLD EI + G S+GF F+NY++ +++ A++D
Sbjct: 228 FTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVD 287
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
M+ + + + + V A KK + + R A RL A
Sbjct: 288 EMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKA 326
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 108/236 (45%), Gaps = 31/236 (13%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ LD ++SE ++F + G + + + +D+ ++ +G+GF+ + + A A+ M
Sbjct: 231 VYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKS-RGFGFVNYSTHDSAQAAVDEM 289
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N ++ G+ + V +A H++ ++ G N+++ NL ++D++ L
Sbjct: 290 NDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLR 349
Query: 140 DTFSAFGVILQTPKIM--NMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
+ F+ +G I + K+M I+ P + K A E D D
Sbjct: 350 EMFAPYGTIT-SAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDDQD 408
Query: 198 T----------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD +
Sbjct: 409 KENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVR 464
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 121/264 (45%), Gaps = 55/264 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 120
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 121 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 180
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 181 AQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKAN 240
Query: 182 --NIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASDASI 219
NI++ N++PE+ RD +TG S+GF F+N+ S E + ++
Sbjct: 241 FTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAV 300
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
++ + + + V A KK +
Sbjct: 301 QELNEKEFHGQNLYVGRAQKKHER 324
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 132/292 (45%), Gaps = 36/292 (12%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
IYV ++ +V++ LF + G V + + +D+ T +G+GF+ F EDA A++
Sbjct: 243 NIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQE 302
Query: 96 MNMIKLYGKPIRVNKAS-SHQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N + +G+ + V +A H++ ++ G N++I NLD EVD++ L
Sbjct: 303 LNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKL 362
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIG-NLDPEIMRDPD 197
FS FG I + + I G+ + +KN + G + PE D
Sbjct: 363 RQLFSEFGPITSAKVMRDSITEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGED 422
Query: 198 ------TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA 251
G SKGF F+ +A+ + + ++ M+ + + N+P+ V+ A +KD + ++
Sbjct: 423 SKSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQ----L 478
Query: 252 ERLLAAQNPLSQADRPH-----QLFADAP---PPAPLPPPPPPINIMGLPPP 295
E+ + A+N L Q + AP P P PP G+P P
Sbjct: 479 EQSIQARNQLRMQQAAAAAGMPQQYMQAPVFYGPGSQPGFMPPAGGRGMPYP 530
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 128/279 (45%), Gaps = 56/279 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 54 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 113
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 114 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 173
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 174 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 233
Query: 182 --NIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
N++I NLD EI D G S+GF F+N+++ E++ A+++
Sbjct: 234 FTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVE 293
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
M+ + + ++ + V A KK + + R A RL A
Sbjct: 294 EMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKA 332
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 107/242 (44%), Gaps = 37/242 (15%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ LD ++ + ++F + G + + + +D+ ++ +G+GF+ F E A A++ M
Sbjct: 237 VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKS-RGFGFVNFSTHESAQAAVEEM 295
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N ++ + + V +A H++ ++ G N+++ NL ++D++ L
Sbjct: 296 NDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLR 355
Query: 140 DTFSAFGVILQTPKIM--NMIKLYGKPIRVNKASSHQKNLDVGAN--------------I 183
+ F +G I + K+M ++ P K K D A
Sbjct: 356 ELFGPYGTIT-SAKVMRDTNVERDQSPDSAGKEKEADKENDKEATPEAEKAEKAEEKPSE 414
Query: 184 FIGNLDPEIMRDPDT--GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
D E + G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD
Sbjct: 415 SSEEKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKD 474
Query: 242 SK 243
+
Sbjct: 475 VR 476
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 41/210 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ D + A++
Sbjct: 46 ASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 105
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + G+ R+ + G NIFI NLD +D K L+DTF+AFG IL
Sbjct: 106 HLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDIL---- 161
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+ VG + + G S+GFAF++Y++ E
Sbjct: 162 ----------------------SCKVGTD--------------ENGKSRGFAFVHYSTGE 185
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
A+DA+I A++G L ++ + V + K +
Sbjct: 186 AADAAIKAVNGMLLNDKKVYVGHHVGKKER 215
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 58/224 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ +D +V++ +L GP ++V + +D +G+GF+ + E A A+ +
Sbjct: 229 VYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDE-KGVSKGFGFVNYENHESARKAVDEL 287
Query: 97 NMIKLYGKPIRVNKA------------SSHQKNLD-----VGANIFIGNLDPEVDEKLLY 139
N ++ GK + +A S +K L+ G N+++ NLD E D+ L
Sbjct: 288 NEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLR 347
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
F AFG I + ++MRD D+G
Sbjct: 348 AEFEAFGTITSS---------------------------------------KVMRD-DSG 367
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
S+GF F+ Y+S + + ++ M+G+ + +P+ V+ A +KD +
Sbjct: 368 VSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVR 411
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 41/210 (19%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++E+F GPV ++ + +D VT+ GY ++ ++ D + A++
Sbjct: 46 ASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 105
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + G+ R+ + G NIFI NLD +D K L+DTF+AFG IL
Sbjct: 106 HLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDIL---- 161
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213
+ VG + + G S+GFAF++Y++ E
Sbjct: 162 ----------------------SCKVGTD--------------ENGKSRGFAFVHYSTGE 185
Query: 214 ASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
A+DA+I A++G L ++ + V + K +
Sbjct: 186 AADAAIKAVNGMLLNDKKVYVGHHVGKKER 215
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 58/224 (25%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ +D +V++ +L GP ++V + +D +G+GF+ + E A A+ +
Sbjct: 229 VYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDE-KGVSKGFGFVNYENHESARKAVDEL 287
Query: 97 NMIKLYGKPIRVNKA------------SSHQKNLD-----VGANIFIGNLDPEVDEKLLY 139
N ++ GK + +A S +K L+ G N+++ NLD E D+ L
Sbjct: 288 NEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLR 347
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
F AFG I + ++MRD D+G
Sbjct: 348 AEFEAFGTITSS---------------------------------------KVMRD-DSG 367
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
S+GF F+ Y+S + + ++ M+G+ + +P+ V+ A +KD +
Sbjct: 368 VSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVR 411
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 129/280 (46%), Gaps = 58/280 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 60 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 119
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + GA NIFI NLD +D K L+DTF+AFG IL
Sbjct: 120 ELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKV 179
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 180 AQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 239
Query: 182 --NIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASDASI 219
N+++ N++ E+ RD + G S+GF F+N+ + EA+ ++
Sbjct: 240 FTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAV 298
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
D ++G+ + + V A KK + + R A RL A
Sbjct: 299 DELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKA 338
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 121/261 (46%), Gaps = 24/261 (9%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+YV ++++V++ ELF + G V + + +D+ ++ +G+GF+ F E A A+
Sbjct: 242 NVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKS-RGFGFVNFTTHEAAAQAVDE 300
Query: 96 MNMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLL 138
+N G+ + V +A H++ ++ G N++I NL +VD+ L
Sbjct: 301 LNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKL 360
Query: 139 YDTFSAFGVILQTPKIM--NMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196
FS +G I + K+M ++I+ + +K + + E D
Sbjct: 361 RAMFSEYGPIT-SAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDR 419
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA--AERL 254
G SKGF F+ +++ + + ++ M+ + + +P+ V+ A +KD + + ++ A
Sbjct: 420 KLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQARNQ 479
Query: 255 LAAQNPLSQADRPHQLFADAP 275
L Q +QA P Q + AP
Sbjct: 480 LRMQQAAAQAGMPQQ-YMQAP 499
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 127/279 (45%), Gaps = 56/279 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 49 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 108
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 109 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 168
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 169 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 228
Query: 182 --NIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASID 220
N++I N+D ++ + G S+GF F+N+++ E++ A++D
Sbjct: 229 FTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVD 288
Query: 221 AMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
M+ + + + + V A KK + + R A RL A
Sbjct: 289 EMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKA 327
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 110/245 (44%), Gaps = 40/245 (16%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ +D V+E ELF + G + + + +D+ ++ +G+GF+ F E A A+ M
Sbjct: 232 VYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKS-RGFGFVNFSTHESAQAAVDEM 290
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N ++ + + V +A H++ ++ G N+++ NL +VD++ L
Sbjct: 291 NEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 350
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPI------RVNKASSHQKNLDVG------------A 181
+ F +G I + K+M + + NK ++ + + A
Sbjct: 351 ELFGPYGTIT-SAKVMRDTNIERTQTPESDKEKENKEATKENEKESSEAEKAEKTEEKPA 409
Query: 182 NIFIGNLDPEIMRDPDT---GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238
+ + + + D G SKGF F+ ++S + + ++ M+ + + +P+ V+ A
Sbjct: 410 DSGDEKKEDKESKKADKKGLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 469
Query: 239 KKDSK 243
+KD +
Sbjct: 470 RKDVR 474
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 129/280 (46%), Gaps = 58/280 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 52 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 111
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 112 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKV 171
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 172 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 231
Query: 182 --NIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASDASI 219
N++I N+D E+ RD + G S+GF F+N+++ +++ A++
Sbjct: 232 FTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHDSAQAAV 290
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
D M+ + + + + V A KK + + R A RL A
Sbjct: 291 DEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKA 330
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 108/232 (46%), Gaps = 27/232 (11%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ +D +V++ ++F + G + + + +D+ ++ +G+GF+ F + A A+ M
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKS-RGFGFVNFSTHDSAQAAVDEM 293
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N ++ G+ + V +A H++ ++ G N+++ NL +VD++ L
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 353
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT- 198
+ FS FG I + K+M G+ K + N + + + +
Sbjct: 354 ELFSPFGTIT-SAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEPK 412
Query: 199 -------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD +
Sbjct: 413 KTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 464
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 129/280 (46%), Gaps = 58/280 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 52 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 111
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 112 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKV 171
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 172 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 231
Query: 182 --NIFIGNLDPEIM--------------------RDPDTGNSKGFAFINYASFEASDASI 219
N++I N+D E+ RD + G S+GF F+N+++ +++ A++
Sbjct: 232 FTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHDSAQAAV 290
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
D M+ + + + + V A KK + + R A RL A
Sbjct: 291 DEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKA 330
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 106/230 (46%), Gaps = 25/230 (10%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ +D +V++ ++F + G + + + +D+ ++ +G+GF+ F + A A+ M
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKS-RGFGFVNFSTHDSAQAAVDEM 293
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N ++ G+ + V +A H++ ++ G N+++ NL +VD++ L
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 353
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT- 198
+ FS FG I + K+M G+ K K + E +
Sbjct: 354 ELFSPFGTIT-SAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKKT 412
Query: 199 -----GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD +
Sbjct: 413 EKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 462
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 120/264 (45%), Gaps = 55/264 (20%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
++++YVG LD V+E+ + +LF Q PV N+ + +D +T GY ++ F EDA A+
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAM 116
Query: 94 KIMNMIKLYGKPIRVNKASSH-QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+ +N + +PIR+ ++ L N+FI NLD +D K LY+TFS+FG IL
Sbjct: 117 ESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCK 176
Query: 153 KIMNMI----------------------KLYGKPI------------RVNKASSHQKNLD 178
M+++ KL G + R ++A S +
Sbjct: 177 VAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVP 236
Query: 179 VGANIFIGNLDPEIMRDP-------------------DTGNSKGFAFINYASFEASDASI 219
N+++ NL EI D +GNS+ F F+N+ S EA+ ++
Sbjct: 237 SFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 296
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ M+G L + V A KK +
Sbjct: 297 EKMNGISLGEDVLYVGRAQKKSDR 320
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 140/342 (40%), Gaps = 78/342 (22%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + ++E F G +++ + D V ++ +GYGF++F EE A A
Sbjct: 144 GKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRS-KGYGFVQFEKEETAQAA 202
Query: 93 IKIMNMIKLYGKPI-------RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
I +N + L K + R ++A S + N+++ NL E+ + L TF +
Sbjct: 203 IDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKY 262
Query: 146 G-----VILQ---------------TPKI-------MNMIKLYGKPI----RVNKASSHQ 174
G V+++ +P+ MN I L G+ + R K S +
Sbjct: 263 GDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISL-GEDVLYVGRAQKKSDRE 321
Query: 175 KNLDV--------------GANIFIGNLDPEIMRDP-------------------DTGNS 201
+ L G+N+++ NLD + + G S
Sbjct: 322 EELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS 381
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPL 261
+GF F+ Y++ E + ++ M+G+ + +P+ V+ A +K+ + H + + + +
Sbjct: 382 RGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEER-QAHLQSLFTQIRSPGTM 440
Query: 262 SQADRPHQLFADAPPPAPLPPPPPPI----NIMGLPPPPPSG 299
S P F PP P+ P P+ N GL P P G
Sbjct: 441 SPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMG 482
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 128/280 (45%), Gaps = 60/280 (21%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
SG A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 90 DYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
+ A+ MN L G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS FG
Sbjct: 66 ERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGN 124
Query: 148 IL--------------------------QTPKIMNMIKLYGKPIRVNK-ASSHQKNLDVG 180
IL Q MN + L + + V S ++ ++G
Sbjct: 125 ILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELG 184
Query: 181 A------NIFIGN--------------------LDPEIMRDPDTGNSKGFAFINYASFEA 214
A NI++ N L ++MRD ++G+S+ F F+N+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
+ ++ M+G+ + R + YA + + +R R
Sbjct: 244 AQKAVVHMNGKEVSGRLL---YAGRAQKRVERQNELKRRF 280
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 114/284 (40%), Gaps = 69/284 (24%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV L V E + +LF Q G +++V + +D + + +GF+ F E+A A+ M
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHS-RCFGFVNFEKHEEAQKAVVHM 251
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N ++ G+ + R K Q L G N+++ NLD +D+ L
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
FS +GVI + K+M + G
Sbjct: 312 KEFSPYGVIT-SAKVMT----------------------------------------EGG 330
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK----GDRHGSAAERLL 255
+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ + +++ +
Sbjct: 331 HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMR 390
Query: 256 AAQNP-LSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPPS 298
NP L +P F A +P PP G P P+
Sbjct: 391 TLSNPLLGSFQQPSSYFLPA-----MPQPPAQAAYYGCGPVTPT 429
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 52/186 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL---------------------QTPK------- 153
A++++G+L P+V E +LY+ FS G IL Q P
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 154 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI----MRDP----------- 196
MN L G+PIR+ ++ + VG NIFI NL+ I + D
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 197 ---DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
D S+GF F+++ + EA+ +I+ M+G L +R + V + FK S+ +R R
Sbjct: 130 VACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FK--SRREREAELGAR 186
Query: 254 LLAAQN 259
L N
Sbjct: 187 ALEFTN 192
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 123/264 (46%), Gaps = 56/264 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + + A+
Sbjct: 42 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALD 101
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 102 ELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 161
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + ++K K ++ A
Sbjct: 162 AQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 221
Query: 182 --NIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASI 219
NI+I N+DPE+ RD + G S+GF F+N+++ E++ A++
Sbjct: 222 FTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFGFVNFSTHESAQAAV 280
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ M+ + + ++ + V A KK +
Sbjct: 281 EEMNDKEVRSQKLYVGRAQKKHER 304
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 105/235 (44%), Gaps = 29/235 (12%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IY+ +D +V + +LF + G + + + +D ++ +G+GF+ F E A A++ M
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKS-RGFGFVNFSTHESAQAAVEEM 283
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N ++ + + V +A H++ ++ G N+++ NL +VD+ L
Sbjct: 284 NDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLR 343
Query: 140 DTFSAFGVILQTPKIMNMIKL-YGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
+ F +G I + + + P K S++++N + + +
Sbjct: 344 ELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEEKKE 403
Query: 199 ----------GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD +
Sbjct: 404 AEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 458
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 42/220 (19%)
Query: 17 QSLSQTKLEGGGESGDGD-ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTH 75
++ +++ E G + GD A++YVG LD V+E +++E+F GPV +V + +D +T+
Sbjct: 27 EAKTESSEEKGSKEDQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRS 86
Query: 76 QGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVD 134
GY ++ F + D A++ +N + +P R+ + GA NI+I NLDP +D
Sbjct: 87 LGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAID 146
Query: 135 EKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMR 194
K L+DTFSAFG IL +I
Sbjct: 147 NKALHDTFSAFGQILSC---------------------------------------KIAT 167
Query: 195 DPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234
D + GNS+GF F++Y S E+++++I ++G L ++ + V
Sbjct: 168 D-EFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFV 206
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/281 (19%), Positives = 106/281 (37%), Gaps = 71/281 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G IY+ LD + + + F G +++ + D + +G+GF+ + E A+ A
Sbjct: 132 GAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNS-RGFGFVHYESAESAESA 190
Query: 93 IKIMNMIKLYGKPIRV-------NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
I+ +N + L K + V ++ S ++ + N+FI NL E+ E + + F
Sbjct: 191 IQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELVNKF 250
Query: 146 G---------------------------VILQTPKIMNMIKLYGKPIRVNKASSHQKNLD 178
G V ++ ++ + G + +A + D
Sbjct: 251 GETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERAD 310
Query: 179 -----------------VGANIFIGNLDPEIMRDP-------------------DTGNSK 202
G N++I NLD I D + G SK
Sbjct: 311 ELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKSK 370
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
GF F+ Y+S E + ++ M+ + + +P+ V A +KD +
Sbjct: 371 GFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVLAQRKDVR 411
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 122/277 (44%), Gaps = 58/277 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + ED + A++
Sbjct: 48 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALE 107
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 108 ELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKV 167
Query: 154 IMNMI---KLYG-----KPIRVNKASSH-------QKNLDVG------------------ 180
+ + K YG N A H +K + VG
Sbjct: 168 AQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKAN 227
Query: 181 -ANIFIGNLD--------------------PEIMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N+D I RD D G S+GF F+NY EA+ ++
Sbjct: 228 FTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARD-DQGKSRGFGFVNYIRHEAAAVAV 286
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERL 254
D ++ + + V A KK + + R A RL
Sbjct: 287 DHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARL 323
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 127/297 (42%), Gaps = 41/297 (13%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV +D V++ ELF + G + + + +D ++ +G+GF+ ++ E A A+ +
Sbjct: 231 IYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKS-RGFGFVNYIRHEAAAVAVDHL 289
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N I+ G+ + V +A H++ ++ G N++I NL+ +VD++ L
Sbjct: 290 NDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLR 349
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
D F+ FG I I+ + + + K + G+ + D G
Sbjct: 350 DMFTPFGTITSAKVILRDEEKKDEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAG 409
Query: 200 N-------------SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
+ SKGF F+ +++ + + ++ M+ + + +P+ V+ A +KD + ++
Sbjct: 410 DKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQ 469
Query: 247 HGSAAERLLAAQNPLSQADRPHQLFAD------APPPAPLPPPPPPINIMGLPPPPP 297
E + A+N L + Q F AP P+ PP M P P
Sbjct: 470 ----LEATIQARNQLRMQQQQQQQFGGIPQMFIAPGQQPMMYPPGARGQMPFPAGMP 522
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 121/264 (45%), Gaps = 55/264 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 55 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 114
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP- 152
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 115 DLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 174
Query: 153 --------------------------KIMNMIKLYGKPI----RVNKASSHQKNLDVGA- 181
K +N + L K + + K K ++ A
Sbjct: 175 AQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKAN 234
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
N+++ N+D + + RD ++G S+GF F+N+ S + + A++
Sbjct: 235 FTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAV 294
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+A++ + + + V A KK +
Sbjct: 295 EALNDKDFKGQKLYVGRAQKKHER 318
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 108/242 (44%), Gaps = 40/242 (16%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV +D +E +LF + G + + + +D + +G+GF+ F ++A A++ +
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 97 NMIKLYGKPIRVNKAS-SHQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N G+ + V +A H++ ++ G N++I NL ++D++ L
Sbjct: 298 NDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 357
Query: 140 DTFSAFGVILQTPKIM------------------NMIKLYGKPIRVNKASSHQKNLDVGA 181
+ FS++G I + K+M + + ++A + +N D
Sbjct: 358 ELFSSYGTIT-SAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKE 416
Query: 182 NIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
N + + G SKGF F+ ++S + + ++ M+ + + +P+ V+ A +KD
Sbjct: 417 NK----AESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKD 472
Query: 242 SK 243
+
Sbjct: 473 VR 474
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 126/280 (45%), Gaps = 58/280 (20%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D +T+ GY ++ + D + A++
Sbjct: 65 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALE 124
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL---- 149
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 125 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 184
Query: 150 -----------------------QTPKIMNMIKLYGKPIRVN----KASSHQKNLDVGA- 181
Q K +N + L K + V K K ++ A
Sbjct: 185 AQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKAN 244
Query: 182 --NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASI 219
NI++ N+ E + RD + G S+GF F+N+ + E + ++
Sbjct: 245 FTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSE-GKSRGFGFVNFTTHECAAKAV 303
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERLLAA 257
+ ++G+ + + V A KK + + R A RL A
Sbjct: 304 EELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKA 343
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 124/292 (42%), Gaps = 37/292 (12%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV + + ++ +LF + G V + + +D ++ +G+GF+ F E A A++ +
Sbjct: 248 IYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKS-RGFGFVNFTTHECAAKAVEEL 306
Query: 97 NMIKLYGKPIRVNKASS-HQKNLDV----------------GANIFIGNLDPEVDEKLLY 139
N + G+ + V +A H++ ++ G N++I NL ++D+ L
Sbjct: 307 NGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDKLR 366
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLD------PEIM 193
FS +G I + K+M G + + + E
Sbjct: 367 QMFSEYGPIT-SAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTEKK 425
Query: 194 RDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA--A 251
D G SKGF F+ +++ + + ++ M+ + + +P+ V+ A +KD + ++ ++ A
Sbjct: 426 GDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRKNQLEASIQA 485
Query: 252 ERLLAAQNPLSQADRPHQ------LFADAPPPAPLPPP----PPPINIMGLP 293
L Q +QA P Q +A P +PP P P +G+P
Sbjct: 486 RNQLRMQQAAAQAGLPQQYMQTPVYYAPGQQPNFMPPGGRGMPFPQGGLGMP 537
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 128/261 (49%), Gaps = 57/261 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L++ F GPV+++ + +D+VT+ GY ++ F+ DA A+
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K LY+ FSAFG IL +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIG-NVFIKNLDKSIDNKTLYEHFSAFGKIL-SS 127
Query: 153 KIMN----------------------MIKLYGKPI------------RVNKASSHQKNLD 178
K+M+ + ++ GK + R ++ + +
Sbjct: 128 KVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKAS 187
Query: 179 VGANIFI----GNLDPEIMRD---------------PDTGNSKGFAFINYASFEASDASI 219
N++I G++D E ++D +G SKGF F+++ S EA+ ++
Sbjct: 188 EFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAV 247
Query: 220 DAMHGQYLCNRPISVSYAFKK 240
+ M+G+ + + I V A KK
Sbjct: 248 EEMNGRDINGQLIFVGRAQKK 268
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 90/218 (41%), Gaps = 59/218 (27%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + ++F + G ++V + D ++ +G+GF+ F E A A++ M
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKS-KGFGFVSFDSHEAAKKAVEEM 250
Query: 97 NMIKLYGKPI---RVNKASSHQKNLDV--------------GANIFIGNLDPEVDEKLLY 139
N + G+ I R K Q L G ++I NLD +D++ L
Sbjct: 251 NGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 310
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
+ FS+FG I + K+M + G
Sbjct: 311 NEFSSFGSISRV-KVM----------------------------------------QEEG 329
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
SKGF I ++S E + ++ M+G+ L ++P+S++ A
Sbjct: 330 QSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 367
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ LDD + + + F G + V + ++ +G+G I F EDA A+ M
Sbjct: 295 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE--EGQSKGFGLICFSSPEDATKAMTEM 352
Query: 97 NMIKLYGKPIRVNKASSH 114
N L KP+ + A H
Sbjct: 353 NGRILGSKPLSIALAQRH 370
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 50/233 (21%)
Query: 25 EGGGESG--DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIE 82
E G SG + A++YVG L+ V+E ++E+F G V ++ + +D V++ GY ++
Sbjct: 55 EQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVN 114
Query: 83 FMGEEDADYAIKIMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLY 139
+ ED + AI+ +N + G+P R+ + S +++ D NIFI NL P +D K L+
Sbjct: 115 YHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGD--GNIFIKNLHPAIDNKALH 172
Query: 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199
DTFSAFG IL ++ D D G
Sbjct: 173 DTFSAFGKILSV---------------------------------------KVATD-DLG 192
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
SK F F++Y + EA+ A+I++++G L +R + Y K SK DR E
Sbjct: 193 QSKCFGFVHYETEEAAQAAIESVNGMLLNDREV---YVGKHVSKKDRESKLEE 242
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 117/297 (39%), Gaps = 80/297 (26%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
IYV +D +E ELF G + ++++ KD ++ +G+GF+ F E A A++
Sbjct: 249 NIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKS-KGFGFVNFEEHEAAAKAVEE 307
Query: 96 MNMIKLYGKPIRVNKASSHQKNLD-----------------VGANIFIGNLDPEVDEKLL 138
+N ++ G+ I V +A ++ + G N+F+ NLD ++D + L
Sbjct: 308 LNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKL 367
Query: 139 YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198
+ F FG I + ++M D D
Sbjct: 368 EEEFKPFGTITSS---------------------------------------KVMVD-DA 387
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR--HGSAAERLLA 256
G SKGF F+ +++ E + +I M+ + + +P+ V+ A +KD + + A +
Sbjct: 388 GKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQARNQMR 447
Query: 257 AQNPLSQADRPHQLFADAPPP----------------APLPPPPPPINIMGLPPPPP 297
QN + P Q PP AP P P P + + G P P
Sbjct: 448 MQNAAAAGGLPGQFM----PPMFYGQQGFFPPNGRGNAPFPGPNPQMMMRGRGQPFP 500
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 128/279 (45%), Gaps = 61/279 (21%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
++++Y G LD KV+E +++LF VV+V + +D+ + GY +I F DA A+
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAM 106
Query: 94 KIMNMIKLYGKPIRVNKASSH-QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+ +N L+ +PIR+ ++ L NIFI NLD +D K L++TFS+FG IL
Sbjct: 107 EALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCK 166
Query: 153 KIMNMI---KLYGKPIRVNKASSHQKNLD-------------VG---------------- 180
M++ K YG ++ K S Q +D VG
Sbjct: 167 VAMDVTGRSKGYGF-VQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPT 225
Query: 181 ---ANIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDA 217
N+++ NL EI MRD +GNS+ F F+N+ EA+ +
Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAAS 284
Query: 218 SIDAMHGQYLCNRPISVSYAFKKDSKGD--RHGSAAERL 254
+++ M+G L + + V A KK + + R ER+
Sbjct: 285 AVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERI 323
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 73/282 (25%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + ++E F G +++ + D VT +GYGF++F EE A A
Sbjct: 134 GKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAA 192
Query: 93 IKIMNMIKLYGKPI-------RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
I +N + + K + R +A N+++ NL E+ E L TF F
Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKF 252
Query: 146 GVI---------------------------LQTPKIMNMIKLYGKPI---RVNKASSHQK 175
GVI + MN I L + R K S ++
Sbjct: 253 GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312
Query: 176 NL--------------DVGANIFIGNLD--------------------PEIMRDPDTGNS 201
L GAN+++ NLD ++M +P G S
Sbjct: 313 ELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMS 371
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+GF F+ Y++ E + ++ M+G+ + +P+ ++ A +K+ +
Sbjct: 372 RGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDR 413
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 112/264 (42%), Gaps = 55/264 (20%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ ++YVG LD V+E +++E+F G V ++ + +D VT+ GY ++ F+ D + A+
Sbjct: 46 NTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAM 105
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+ +N + +P R+ + G NIFI NLD +D K L+DTF+AFG IL
Sbjct: 106 EQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCK 165
Query: 153 KIMNMIKLYGKPI--------------RVNKASSHQKNLDVG------------------ 180
N G VN + K + VG
Sbjct: 166 VATNETGSLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRAN 225
Query: 181 -ANIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASI 219
N++ N+DPE+ RD D G SKGF F+N+ + ++
Sbjct: 226 FTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDED-GKSKGFGFVNFEDHNEAQKAV 284
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
D +H + + V+ A KK +
Sbjct: 285 DELHDSDFKGQKLFVARAQKKSER 308
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 102/240 (42%), Gaps = 61/240 (25%)
Query: 21 QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGF 80
Q K+E E+ +Y +D +V++ +LF + G + + + +D ++ +G+GF
Sbjct: 216 QAKIE---ETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKS-KGFGF 271
Query: 81 IEFMGEEDADYAIKIMNMIKLYGKPI---RVNKASSHQKNLDV--------------GAN 123
+ F +A A+ ++ G+ + R K S ++ L G N
Sbjct: 272 VNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVN 331
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+++ N+ D++ L + F+ FG I
Sbjct: 332 LYLKNIPESYDDERLREEFAPFGAITSC-------------------------------- 359
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+IMR P +G S+GF F+ Y++ E ++ ++ M+G+ L NRP+ V+ A +KD +
Sbjct: 360 -------KIMRAP-SGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVR 411
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 45/224 (20%)
Query: 16 LQSLS-QTKLEGGGESGDGD---ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRV 71
L++LS Q K EG E + A++YVG LD VSE ++++F G V ++ + +D +
Sbjct: 12 LENLSLQDKQEGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAI 71
Query: 72 TQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLD 130
T+T GY ++ F + A AI+ +N + GK R+ + GA NIFI NL
Sbjct: 72 TKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLH 131
Query: 131 PEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 190
P++D K LYDTFS FG IL +
Sbjct: 132 PDIDNKALYDTFSVFGNILSS--------------------------------------- 152
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234
++ D +TG SKGF ++++ E++ +IDA++G L + I V
Sbjct: 153 KVATD-ETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYV 195
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 104/243 (42%), Gaps = 59/243 (24%)
Query: 19 LSQTKLEGGGESGDGDAT-IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG 77
LS+ + E E + T +Y+ ++ + ++ EL + G +V + + + ++G
Sbjct: 199 LSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGE-NKG 257
Query: 78 YGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS---SHQKNLDV-------------- 120
+GF+ F+ EDA ++ +N + G+P+ VN+A Q+ L
Sbjct: 258 FGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQ 317
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVG 180
G N+FI NLD +D+K L + F+ +G I + K+M
Sbjct: 318 GINLFIKNLDDSIDDKKLEEEFAPYGTIT-SAKVMTT----------------------- 353
Query: 181 ANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
+ G SKGF F+ +++ E + +I + Q + +P+ V+ A +K
Sbjct: 354 ----------------ENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 397
Query: 241 DSK 243
D +
Sbjct: 398 DVR 400
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 43/202 (21%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E+ +++ F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + KPIR+ ++ + VG N+FI NLD +D K +YDTFSAFG IL
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVG-NVFIKNLDRAIDNKAIYDTFSAFGNILSC- 119
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
K ++ +K GNSKG+ F+++ +
Sbjct: 120 ----------------KVATDEK-----------------------GNSKGYGFVHFETE 140
Query: 213 EASDASIDAMHGQYLCNRPISV 234
EA++ SID ++G L + + V
Sbjct: 141 EAANTSIDKVNGMLLNGKKVYV 162
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/284 (20%), Positives = 116/284 (40%), Gaps = 76/284 (26%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + +++ F G +++ + D + +GYGF+ F EE A+ +
Sbjct: 88 GVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNS-KGYGFVHFETEEAANTS 146
Query: 93 IKIMNMIKLYGKPIRVNK---ASSHQKNLDVGA----NIFIGNLDPEVDEKLLYDTFSAF 145
I +N + L GK + V K +K L A N+++ N + D++ L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 146 GVILQTPKIMN-----------------------MIKLYGKPI---------RVNKASSH 173
G I + K+M+ + L GK + R K +
Sbjct: 207 GKIT-SYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAER 265
Query: 174 QKNLD--------------VGANIFIGNLD--------------------PEIMRDPDTG 199
Q+ L G N+++ NLD ++M D + G
Sbjct: 266 QQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-G 324
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
SKGF F+ + + + ++ ++G+ + ++P+ V+ A +K+ +
Sbjct: 325 RSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEER 368
Score = 34.7 bits (78), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 39/116 (33%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGA 181
A++++G+L +V+E L+D FS+ G +L IRV
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVL--------------SIRV-------------- 33
Query: 182 NIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
RD T S G+A++N+ ++ ++D M+ + N+PI + ++
Sbjct: 34 -----------CRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWS 78
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 122/268 (45%), Gaps = 58/268 (21%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D A++YVG L+ V+E L++E+F G V ++ + +D VT+ GY ++ F ED +
Sbjct: 48 DTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEK 107
Query: 92 AIKIMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
AI+ +N + G+P R+ + S ++N D NIFI NL P +D K L+DTF+AFG I
Sbjct: 108 AIEDLNYSLIEGRPCRIMWSQRDPSLRRNGD--GNIFIKNLHPAIDNKALHDTFTAFGKI 165
Query: 149 LQTPKI---MNMIKLYG------------------------------------------K 163
L M + K +G +
Sbjct: 166 LSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFE 225
Query: 164 PIRVNKASSHQKNLDVG------ANIF--IGNLDPEIMRDPDTGNSKGFAFINYASFEAS 215
++ N + + KN+D+ +F G + + G SKGF F+N+ + E++
Sbjct: 226 EMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESA 285
Query: 216 DASIDAMHGQYLCNRPISVSYAFKKDSK 243
++D ++ + + + I V A KK +
Sbjct: 286 VKAVDELNDKEINGQKIYVGRAQKKRER 313
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 116/297 (39%), Gaps = 73/297 (24%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+Y +D SE +LF G + ++++ KD ++ +G+GF+ F E A A+
Sbjct: 232 TNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKS-KGFGFVNFENHESAVKAVD 290
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLD-----------------VGANIFIGNLDPEVDEKL 137
+N ++ G+ I V +A ++ L+ G N+FI NLD +D +
Sbjct: 291 ELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEK 350
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + F FG I +M D +
Sbjct: 351 LEEEFKPFGSITSA---------------------------------------RVMVD-E 370
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR--HGSAAERLL 255
TG SKGF F+ ++S E + +I M+ + + +P+ V+ A +KD + + A +
Sbjct: 371 TGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRSQLEQQIQARNQM 430
Query: 256 AAQNPLSQADRPHQ-----LFADAP---PP-----APLPPPPPPINIMGLPPPPPSG 299
QN + P Q + P PP P P P P + + PPP G
Sbjct: 431 RMQNAAATGGIPGQFIPPMFYGQQPGFFPPNGRGNGPFPGPNPQMMMPRGQIPPPQG 487
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 40/130 (30%)
Query: 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLD 178
D A++++G L+P V+E LL++ FS G + IRV
Sbjct: 48 DTSASLYVGELNPSVNEALLFEIFSPIGQVAS--------------IRV----------- 82
Query: 179 VGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238
RD T S G+A++N+ FE + +I+ ++ + RP + ++
Sbjct: 83 --------------CRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWS- 127
Query: 239 KKDSKGDRHG 248
++D R+G
Sbjct: 128 QRDPSLRRNG 137
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 120/271 (44%), Gaps = 60/271 (22%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ +A++YVG LD ++E L++++F GP+ ++ + +D VT+ GY ++ + E
Sbjct: 47 NNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKK 106
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
AI+ +N ++ G+P R+ + G+ NIFI NL P +D K L++TFS FG +L
Sbjct: 107 AIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLS 166
Query: 151 TP--------------------------------KIMNMIKLYG-----KPIRVNKASSH 173
+MN +++Y K R++K
Sbjct: 167 CKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEA 226
Query: 174 QKNLDVGANIFIGNLDPEI-------------------MRDPDTGNSKGFAFINYASFEA 214
+ N NI++ N+D E + G KGF F+N+ A
Sbjct: 227 KANF---TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNA 283
Query: 215 SDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245
+ +++ ++G+ ++ + V A KK + +
Sbjct: 284 AAKAVEELNGKEFKSQALYVGRAQKKYERAE 314
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 105/257 (40%), Gaps = 63/257 (24%)
Query: 4 GREIQAGISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVN 63
G E+ + P +S KLE E+ IYV +D + ++ +LF Q G +V+
Sbjct: 205 GLEVYVAMHVPKKDRIS--KLE---EAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVS 259
Query: 64 VHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLD---- 119
+ KD +G+GF+ F+ A A++ +N + + + V +A + +
Sbjct: 260 AALEKD-AEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKK 318
Query: 120 -------------VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIR 166
G N+FI NLD +D++ L + F+ +G I
Sbjct: 319 QYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSA--------------- 363
Query: 167 VNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQY 226
+MRD + GNSKGF F+ ++S E + ++ + Q
Sbjct: 364 ------------------------RVMRDQE-GNSKGFGFVCFSSPEEATKAMTEKNQQI 398
Query: 227 LCNRPISVSYAFKKDSK 243
+ +P+ V+ A +KD +
Sbjct: 399 VAGKPLYVAIAQRKDVR 415
>sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3
SV=1
Length = 382
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 115/257 (44%), Gaps = 56/257 (21%)
Query: 39 VGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNM 98
VG LD V+E ++++ F +GP+ + +D VT++ GYG++ F DA++A+ MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 99 IKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI--- 154
+ GKP R+ + + G NIFI NLD +D + L+ FSAFG IL +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 155 -----------------------MNMIKLYGKPIRVNK--------ASSHQKNLDVGANI 183
MN ++L + + V + A ++ N+
Sbjct: 142 NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNV 201
Query: 184 FIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASIDAMH 223
F+ N+ +I +RD +G SKGF F+ Y + EA+ ++ +H
Sbjct: 202 FVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 224 GQYLCNRPISVSYAFKK 240
G+ + + + V A KK
Sbjct: 261 GKSIDGKVLYVGRAQKK 277
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 90/218 (41%), Gaps = 59/218 (27%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++V + D + + + ELF + GP +V + +D + +G+GF+ + E A A+
Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVL 257
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDV-----------------GANIFIGNLDPEVDEKL 137
++ + GK + V +A + L G I+I NLD ++++
Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 317
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + FS+FG I + +M +
Sbjct: 318 LKEEFSSFGSISRAKVMM-----------------------------------------E 336
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235
G KGF + ++SFE + ++D M+G+ + ++P+ V+
Sbjct: 337 VGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVT 374
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 115/257 (44%), Gaps = 56/257 (21%)
Query: 39 VGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNM 98
VG LD V+E ++++ F +GP+ + +D VT++ GYG++ F DA++A+ MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 99 IKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI--- 154
+ GKP R+ + + G NIFI NLD +D + L+ FSAFG IL +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 155 -----------------------MNMIKLYGKPIRVNK--------ASSHQKNLDVGANI 183
MN ++L + + V + A ++ N+
Sbjct: 142 NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNV 201
Query: 184 FIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASIDAMH 223
F+ N+ +I +RD +G SKGF F+ Y + EA+ ++ +H
Sbjct: 202 FVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 224 GQYLCNRPISVSYAFKK 240
G+ + + + V A KK
Sbjct: 261 GKSIDGKVLYVGRAQKK 277
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 90/218 (41%), Gaps = 59/218 (27%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++V + D + + + ELF + GP +V + +D + +G+GF+ + E A A+
Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVL 257
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDV-----------------GANIFIGNLDPEVDEKL 137
++ + GK + V +A + L G I+I NLD ++++
Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 317
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + FS+FG I + +M +
Sbjct: 318 LKEEFSSFGSISRAKVMM-----------------------------------------E 336
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235
G KGF + ++SFE + ++D M+G+ + ++P+ V+
Sbjct: 337 VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 115/257 (44%), Gaps = 56/257 (21%)
Query: 39 VGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNM 98
VG LD V+E ++++ F +GP+ + +D VT++ GYG++ F DA++A+ MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 99 IKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI--- 154
+ GKP R+ + + G NIFI NLD +D + L+ FSAFG IL +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 155 -----------------------MNMIKLYGKPIRVNK--------ASSHQKNLDVGANI 183
MN ++L + + V + A ++ N+
Sbjct: 142 NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNV 201
Query: 184 FIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASIDAMH 223
F+ N+ +I +RD +G SKGF F+ Y + EA+ ++ +H
Sbjct: 202 FVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 224 GQYLCNRPISVSYAFKK 240
G+ + + + V A KK
Sbjct: 261 GKSIDGKVLYVGRAQKK 277
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 90/218 (41%), Gaps = 59/218 (27%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++V + D + + + ELF + GP +V + +D + +G+GF+ + E A A+
Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVL 257
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDV-----------------GANIFIGNLDPEVDEKL 137
++ + GK + V +A + L G I+I NLD ++++
Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 317
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + FS+FG I + +M +
Sbjct: 318 LKEEFSSFGSISRAKVMM-----------------------------------------E 336
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235
G KGF + ++SFE + ++D M+G+ + ++P+ V+
Sbjct: 337 VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 115/257 (44%), Gaps = 56/257 (21%)
Query: 39 VGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNM 98
VG LD V+E ++++ F +GP+ + +D VT++ GYG++ F DA++A+ MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 99 IKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI--- 154
+ GKP R+ + + G NIFI NLD +D + L+ FSAFG IL +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 155 -----------------------MNMIKLYGKPIRVNK--------ASSHQKNLDVGANI 183
MN ++L + + V + A ++ N+
Sbjct: 142 NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNV 201
Query: 184 FIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASIDAMH 223
F+ N+ +I +RD +G SKGF F+ Y + EA+ ++ +H
Sbjct: 202 FVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 224 GQYLCNRPISVSYAFKK 240
G+ + + + V A KK
Sbjct: 261 GKSIDGKVLYVGRAQKK 277
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 90/218 (41%), Gaps = 59/218 (27%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
++V + D + + + ELF + GP +V + +D + +G+GF+ + E A A+
Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVL 257
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDV-----------------GANIFIGNLDPEVDEKL 137
++ + GK + V +A + L G I+I NLD ++++
Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 317
Query: 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197
L + FS+FG I + +M +
Sbjct: 318 LKEEFSSFGSISRAKVMM-----------------------------------------E 336
Query: 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235
G KGF + ++SFE + ++D M+G+ + ++P+ V+
Sbjct: 337 VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,229,428
Number of Sequences: 539616
Number of extensions: 5804797
Number of successful extensions: 62535
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 648
Number of HSP's that attempted gapping in prelim test: 39076
Number of HSP's gapped (non-prelim): 15204
length of query: 305
length of database: 191,569,459
effective HSP length: 117
effective length of query: 188
effective length of database: 128,434,387
effective search space: 24145664756
effective search space used: 24145664756
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)