Query psy3016
Match_columns 305
No_of_seqs 176 out of 2553
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 23:23:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.9E-34 6.3E-39 266.4 22.4 208 33-241 2-350 (352)
2 TIGR01659 sex-lethal sex-letha 100.0 1E-33 2.2E-38 259.9 21.9 173 30-242 103-277 (346)
3 TIGR01628 PABP-1234 polyadenyl 100.0 3.1E-33 6.6E-38 274.8 23.9 212 30-243 84-367 (562)
4 KOG0148|consensus 100.0 2.6E-33 5.7E-38 238.1 18.1 167 33-244 61-242 (321)
5 KOG0131|consensus 100.0 1.2E-32 2.6E-37 221.8 16.1 194 28-259 3-196 (203)
6 TIGR01645 half-pint poly-U bin 100.0 5.5E-32 1.2E-36 261.1 22.2 174 30-242 103-286 (612)
7 KOG0144|consensus 100.0 1.1E-31 2.3E-36 241.1 17.1 183 22-244 22-210 (510)
8 KOG0117|consensus 100.0 4E-31 8.7E-36 238.4 18.3 209 31-246 80-337 (506)
9 TIGR01628 PABP-1234 polyadenyl 100.0 1.5E-29 3.2E-34 248.7 20.0 206 36-242 2-263 (562)
10 TIGR01622 SF-CC1 splicing fact 100.0 3.3E-29 7.2E-34 240.4 18.3 168 32-239 87-265 (457)
11 TIGR01648 hnRNP-R-Q heterogene 100.0 1.3E-28 2.8E-33 237.4 19.9 205 31-243 55-310 (578)
12 KOG0145|consensus 100.0 1.3E-28 2.8E-33 208.5 14.8 173 30-242 37-211 (360)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 7.5E-26 1.6E-30 218.1 18.2 162 33-240 274-480 (481)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.2E-25 2.5E-30 218.6 19.4 172 31-241 292-503 (509)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.9 6.6E-26 1.4E-30 220.4 16.9 165 30-240 171-375 (509)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.2E-25 2.6E-30 216.7 17.8 159 34-241 2-175 (481)
17 KOG0145|consensus 99.9 4.7E-26 1E-30 193.0 12.8 176 26-240 119-358 (360)
18 KOG0124|consensus 99.9 2.9E-25 6.3E-30 196.0 14.7 169 34-241 113-291 (544)
19 KOG0109|consensus 99.9 1.8E-25 3.9E-30 192.2 11.5 152 35-244 3-154 (346)
20 TIGR01622 SF-CC1 splicing fact 99.9 5.3E-24 1.1E-28 204.4 18.9 166 34-242 186-450 (457)
21 KOG0127|consensus 99.9 3E-24 6.5E-29 198.1 13.6 167 35-241 6-197 (678)
22 KOG0127|consensus 99.9 4.9E-23 1.1E-27 190.1 16.2 199 3-241 73-379 (678)
23 KOG0123|consensus 99.9 4.1E-23 8.8E-28 190.9 14.4 157 36-246 3-159 (369)
24 KOG0146|consensus 99.9 5.7E-23 1.2E-27 174.9 10.4 171 33-243 18-368 (371)
25 KOG0123|consensus 99.9 1.1E-22 2.4E-27 188.0 12.4 214 14-241 66-350 (369)
26 KOG0148|consensus 99.9 1.5E-22 3.2E-27 172.7 11.0 141 31-245 3-147 (321)
27 TIGR01645 half-pint poly-U bin 99.9 1.1E-20 2.3E-25 183.0 19.5 109 3-113 175-283 (612)
28 KOG0110|consensus 99.9 1.4E-21 3E-26 185.8 12.5 171 33-242 514-695 (725)
29 KOG0144|consensus 99.9 1E-21 2.2E-26 177.1 9.2 170 32-241 122-505 (510)
30 KOG0147|consensus 99.9 6E-22 1.3E-26 183.7 7.2 173 30-242 175-360 (549)
31 KOG4205|consensus 99.8 5E-21 1.1E-25 171.5 8.5 171 33-244 5-180 (311)
32 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.5E-19 3.2E-24 167.9 14.7 141 33-173 88-349 (352)
33 KOG0147|consensus 99.8 2.8E-19 6.2E-24 166.0 12.4 203 37-242 281-530 (549)
34 PLN03134 glycine-rich RNA-bind 99.8 4.2E-18 9.1E-23 138.0 12.8 91 25-115 25-115 (144)
35 KOG0117|consensus 99.8 2.9E-18 6.2E-23 155.5 10.8 146 33-178 163-336 (506)
36 TIGR01648 hnRNP-R-Q heterogene 99.7 9.5E-18 2.1E-22 162.3 12.2 143 33-175 137-309 (578)
37 KOG0105|consensus 99.7 2E-17 4.3E-22 134.1 11.3 148 31-227 3-175 (241)
38 KOG4212|consensus 99.7 1.7E-16 3.7E-21 143.6 15.4 175 23-238 33-292 (608)
39 KOG1457|consensus 99.7 6.5E-16 1.4E-20 128.9 13.3 157 28-227 28-273 (284)
40 PF00076 RRM_1: RNA recognitio 99.7 3.8E-16 8.1E-21 110.3 9.3 70 37-107 1-70 (70)
41 KOG1548|consensus 99.7 2.3E-15 5E-20 132.9 16.1 166 30-239 130-351 (382)
42 KOG4206|consensus 99.7 1.2E-15 2.6E-20 128.2 13.3 158 34-238 9-220 (221)
43 KOG0124|consensus 99.6 4.8E-16 1E-20 138.0 9.1 110 1-112 179-288 (544)
44 KOG0106|consensus 99.6 3.7E-16 8E-21 132.3 7.3 148 35-237 2-168 (216)
45 PLN03134 glycine-rich RNA-bind 99.6 7.6E-16 1.7E-20 124.8 8.6 83 120-241 33-115 (144)
46 KOG0122|consensus 99.6 1.9E-15 4.1E-20 127.8 9.3 85 30-114 185-269 (270)
47 KOG0125|consensus 99.6 2.9E-15 6.3E-20 131.4 9.6 93 21-115 83-175 (376)
48 TIGR01659 sex-lethal sex-letha 99.6 8.8E-15 1.9E-19 134.8 11.7 83 33-115 192-276 (346)
49 PF14259 RRM_6: RNA recognitio 99.6 1.3E-14 2.8E-19 102.8 9.6 70 37-107 1-70 (70)
50 COG0724 RNA-binding proteins ( 99.6 2.3E-14 4.9E-19 126.6 12.5 117 34-150 115-254 (306)
51 KOG0121|consensus 99.6 5.3E-15 1.2E-19 113.3 7.2 84 30-113 32-115 (153)
52 KOG1190|consensus 99.6 3.5E-14 7.6E-19 127.9 13.3 158 34-239 297-490 (492)
53 KOG0149|consensus 99.6 4.9E-15 1.1E-19 124.8 6.9 83 30-113 8-90 (247)
54 KOG0120|consensus 99.6 1.7E-14 3.7E-19 135.8 10.4 175 30-243 285-495 (500)
55 KOG0110|consensus 99.5 3.9E-14 8.4E-19 135.4 11.3 164 30-238 381-596 (725)
56 PLN03120 nucleic acid binding 99.5 3.6E-14 7.7E-19 123.4 10.0 78 33-114 3-80 (260)
57 KOG0113|consensus 99.5 4.9E-14 1.1E-18 122.4 9.8 88 26-113 93-180 (335)
58 KOG0132|consensus 99.5 1.8E-13 3.8E-18 131.9 12.9 103 34-142 421-527 (894)
59 PLN03213 repressor of silencin 99.5 8.6E-14 1.9E-18 128.0 9.6 81 29-113 5-87 (759)
60 KOG4211|consensus 99.5 4.8E-13 1E-17 123.4 14.1 166 32-241 8-183 (510)
61 KOG0126|consensus 99.5 5.1E-15 1.1E-19 119.9 1.0 83 33-115 34-116 (219)
62 smart00362 RRM_2 RNA recogniti 99.5 2.6E-13 5.7E-18 95.1 9.4 72 36-109 1-72 (72)
63 KOG0107|consensus 99.5 9.3E-14 2E-18 112.1 7.5 80 32-116 8-87 (195)
64 PF00076 RRM_1: RNA recognitio 99.5 8.5E-14 1.9E-18 98.1 6.3 70 124-233 1-70 (70)
65 PLN03121 nucleic acid binding 99.5 4.2E-13 9.1E-18 115.0 10.5 77 33-113 4-80 (243)
66 KOG0111|consensus 99.5 7.5E-14 1.6E-18 116.4 5.4 88 32-119 8-95 (298)
67 smart00360 RRM RNA recognition 99.4 4.6E-13 9.9E-18 93.5 8.4 71 39-109 1-71 (71)
68 KOG4207|consensus 99.4 2E-13 4.2E-18 112.9 7.0 84 29-112 8-91 (256)
69 KOG1456|consensus 99.4 5.3E-12 1.2E-16 112.7 15.4 164 30-238 283-487 (494)
70 KOG0122|consensus 99.4 3.1E-13 6.8E-18 114.4 6.8 82 120-240 188-269 (270)
71 KOG0108|consensus 99.4 4.5E-13 9.8E-18 125.5 8.0 81 35-115 19-99 (435)
72 KOG1190|consensus 99.4 3E-12 6.4E-17 115.6 12.6 168 32-248 148-381 (492)
73 KOG4212|consensus 99.4 5.5E-12 1.2E-16 114.7 13.8 76 33-109 214-289 (608)
74 cd00590 RRM RRM (RNA recogniti 99.4 3.6E-12 7.7E-17 89.8 9.9 74 36-110 1-74 (74)
75 KOG0130|consensus 99.4 8.5E-13 1.8E-17 102.1 6.6 84 33-116 71-154 (170)
76 KOG0114|consensus 99.4 3.1E-12 6.6E-17 94.6 9.2 87 26-115 10-96 (124)
77 PF14259 RRM_6: RNA recognitio 99.4 1.2E-12 2.6E-17 92.6 6.7 70 124-233 1-70 (70)
78 KOG0107|consensus 99.4 6.6E-13 1.4E-17 107.2 5.1 79 120-242 9-87 (195)
79 KOG1456|consensus 99.3 2.6E-11 5.5E-16 108.5 13.8 164 30-243 27-202 (494)
80 KOG0111|consensus 99.3 1.1E-12 2.4E-17 109.4 4.5 84 121-243 10-93 (298)
81 KOG0149|consensus 99.3 3.9E-12 8.4E-17 107.5 7.8 79 121-239 12-90 (247)
82 KOG4207|consensus 99.3 1.5E-12 3.3E-17 107.7 5.2 83 118-239 10-92 (256)
83 KOG0121|consensus 99.3 2.4E-12 5.1E-17 98.8 5.5 80 120-238 35-114 (153)
84 KOG1365|consensus 99.3 3.8E-12 8.3E-17 114.0 7.6 175 30-243 157-365 (508)
85 PF13893 RRM_5: RNA recognitio 99.3 1.5E-11 3.3E-16 83.2 8.1 56 51-111 1-56 (56)
86 smart00361 RRM_1 RNA recogniti 99.3 1.5E-11 3.3E-16 87.2 8.1 62 48-109 2-70 (70)
87 KOG0125|consensus 99.3 4.4E-12 9.6E-17 111.6 5.8 100 99-240 75-174 (376)
88 PLN03120 nucleic acid binding 99.3 7.2E-12 1.6E-16 109.1 6.9 75 121-238 4-78 (260)
89 KOG0130|consensus 99.3 9.2E-12 2E-16 96.4 5.8 84 120-242 71-154 (170)
90 KOG0120|consensus 99.2 2.5E-11 5.4E-16 114.6 9.1 167 30-242 171-371 (500)
91 smart00362 RRM_2 RNA recogniti 99.2 2.5E-11 5.4E-16 84.9 6.8 72 123-235 1-72 (72)
92 KOG0126|consensus 99.2 4.7E-13 1E-17 108.6 -2.4 80 121-239 35-114 (219)
93 KOG0108|consensus 99.2 1E-11 2.2E-16 116.4 6.1 82 122-242 19-100 (435)
94 PLN03213 repressor of silencin 99.2 1.4E-11 3.1E-16 113.6 6.5 79 120-241 9-89 (759)
95 KOG0113|consensus 99.2 2.9E-11 6.4E-16 105.3 7.8 89 116-243 96-184 (335)
96 KOG0131|consensus 99.2 2.7E-11 5.8E-16 98.6 6.6 86 33-118 95-181 (203)
97 smart00360 RRM RNA recognition 99.2 4.2E-11 9E-16 83.4 6.7 71 126-235 1-71 (71)
98 KOG4454|consensus 99.2 8.9E-12 1.9E-16 104.0 2.6 149 28-232 3-155 (267)
99 KOG0114|consensus 99.2 7.3E-11 1.6E-15 87.4 6.3 79 120-240 17-95 (124)
100 KOG0129|consensus 99.1 9.1E-10 2E-14 102.6 13.7 152 30-221 255-432 (520)
101 KOG4661|consensus 99.1 1.7E-10 3.7E-15 108.1 8.6 83 31-113 402-484 (940)
102 cd00590 RRM RRM (RNA recogniti 99.1 2.2E-10 4.7E-15 80.5 7.2 74 123-236 1-74 (74)
103 COG0724 RNA-binding proteins ( 99.1 1.2E-10 2.5E-15 102.8 7.1 80 121-239 115-194 (306)
104 KOG0109|consensus 99.1 9.2E-11 2E-15 101.9 5.6 77 32-116 76-152 (346)
105 smart00361 RRM_1 RNA recogniti 99.1 1.9E-10 4.1E-15 81.6 6.1 63 135-235 2-70 (70)
106 PF13893 RRM_5: RNA recognitio 99.1 2.9E-10 6.2E-15 76.8 6.6 36 202-237 21-56 (56)
107 KOG0146|consensus 99.1 1.3E-10 2.8E-15 99.8 5.5 87 30-116 281-367 (371)
108 PLN03121 nucleic acid binding 99.1 2.5E-10 5.4E-15 98.0 6.8 75 121-238 5-79 (243)
109 KOG0415|consensus 99.1 2E-10 4.3E-15 102.2 6.1 84 31-114 236-319 (479)
110 KOG0226|consensus 99.1 1.2E-10 2.6E-15 99.4 4.2 165 33-237 95-267 (290)
111 KOG0132|consensus 99.0 1.5E-09 3.2E-14 105.2 11.0 78 121-243 421-498 (894)
112 KOG0112|consensus 99.0 3.2E-10 6.9E-15 111.4 6.3 162 30-240 368-531 (975)
113 KOG0105|consensus 99.0 4.4E-10 9.6E-15 91.7 5.1 79 120-240 5-83 (241)
114 KOG4660|consensus 99.0 1E-09 2.2E-14 103.1 8.0 163 25-239 66-249 (549)
115 KOG0153|consensus 99.0 1.9E-09 4.1E-14 95.9 8.6 80 30-115 224-304 (377)
116 KOG4210|consensus 99.0 6.9E-10 1.5E-14 99.6 5.6 170 32-241 86-265 (285)
117 KOG0415|consensus 99.0 5E-10 1.1E-14 99.7 4.3 85 118-241 236-320 (479)
118 KOG4208|consensus 98.9 2.5E-09 5.4E-14 89.0 7.3 84 31-114 46-130 (214)
119 KOG4205|consensus 98.8 4.4E-09 9.6E-14 94.8 5.7 116 33-149 96-215 (311)
120 KOG4206|consensus 98.8 5.7E-09 1.2E-13 88.1 5.3 84 121-246 9-96 (221)
121 KOG0533|consensus 98.8 2.2E-08 4.8E-13 87.0 8.3 84 30-114 79-162 (243)
122 KOG0226|consensus 98.8 7.7E-09 1.7E-13 88.5 4.5 86 30-115 186-271 (290)
123 KOG4211|consensus 98.7 5E-07 1.1E-11 84.1 16.3 99 4-106 75-174 (510)
124 KOG4208|consensus 98.7 2.8E-08 6E-13 82.8 6.8 82 120-240 48-130 (214)
125 KOG0128|consensus 98.7 2.7E-09 5.8E-14 104.6 -0.8 147 35-239 668-814 (881)
126 KOG0116|consensus 98.6 8.5E-08 1.8E-12 89.8 7.9 82 30-112 284-365 (419)
127 KOG2193|consensus 98.6 1.2E-08 2.5E-13 93.0 1.6 151 35-238 2-155 (584)
128 PF04059 RRM_2: RNA recognitio 98.6 3.2E-07 6.9E-12 68.7 8.6 80 35-114 2-87 (97)
129 KOG4209|consensus 98.6 7.6E-08 1.6E-12 83.7 5.9 83 30-113 97-179 (231)
130 KOG4676|consensus 98.6 1.1E-07 2.4E-12 85.9 6.5 156 33-233 6-219 (479)
131 KOG0151|consensus 98.5 5.3E-07 1.1E-11 87.1 8.1 82 32-113 172-256 (877)
132 KOG1457|consensus 98.4 1.2E-06 2.6E-11 73.9 7.6 91 120-248 33-126 (284)
133 KOG4849|consensus 98.4 1.6E-06 3.6E-11 77.4 8.5 80 121-237 80-159 (498)
134 KOG0153|consensus 98.4 5.7E-07 1.2E-11 80.3 5.3 75 120-239 227-302 (377)
135 KOG4661|consensus 98.3 1E-06 2.2E-11 83.2 6.3 81 121-240 405-485 (940)
136 KOG4660|consensus 98.2 1E-06 2.2E-11 83.3 4.5 70 120-233 74-143 (549)
137 KOG0151|consensus 98.2 3.6E-06 7.9E-11 81.5 8.0 81 121-240 174-257 (877)
138 PF11608 Limkain-b1: Limkain b 98.2 6.1E-06 1.3E-10 59.2 6.8 69 35-113 3-76 (90)
139 KOG4849|consensus 98.1 1E-05 2.2E-10 72.4 8.2 76 34-109 80-157 (498)
140 KOG0533|consensus 98.1 5.6E-06 1.2E-10 72.1 6.5 82 120-241 82-163 (243)
141 KOG4307|consensus 98.1 2.5E-06 5.4E-11 82.4 4.3 169 33-242 310-516 (944)
142 KOG4209|consensus 98.0 4.2E-06 9.2E-11 72.9 4.1 81 120-240 100-180 (231)
143 KOG0116|consensus 98.0 1.5E-05 3.2E-10 74.9 7.7 79 122-240 289-367 (419)
144 KOG0106|consensus 98.0 4.2E-06 9.2E-11 71.4 3.6 71 123-240 3-73 (216)
145 KOG1365|consensus 98.0 5.4E-05 1.2E-09 68.7 9.9 155 30-221 56-225 (508)
146 KOG4454|consensus 98.0 1.1E-05 2.4E-10 67.9 5.1 78 120-238 8-85 (267)
147 KOG1548|consensus 97.9 1.8E-05 4E-10 70.8 5.9 89 121-241 134-222 (382)
148 COG5175 MOT2 Transcriptional r 97.9 2.4E-05 5.2E-10 69.8 6.3 108 35-142 115-241 (480)
149 PF04059 RRM_2: RNA recognitio 97.9 3.7E-05 8E-10 57.6 6.4 82 122-240 2-87 (97)
150 KOG1995|consensus 97.8 1.9E-05 4.2E-10 71.1 4.3 85 30-114 62-154 (351)
151 PF11608 Limkain-b1: Limkain b 97.8 6.8E-05 1.5E-09 53.9 5.6 38 202-239 39-76 (90)
152 KOG0128|consensus 97.7 5.5E-06 1.2E-10 81.9 -0.6 158 30-227 567-734 (881)
153 PF08777 RRM_3: RNA binding mo 97.7 9.6E-05 2.1E-09 56.5 5.9 58 35-98 2-59 (105)
154 KOG4210|consensus 97.6 4.6E-05 1E-09 68.5 3.4 83 32-115 182-265 (285)
155 KOG2416|consensus 97.6 0.00028 6.1E-09 67.5 8.2 80 119-243 442-525 (718)
156 KOG3152|consensus 97.5 6E-05 1.3E-09 65.0 2.6 73 33-105 73-157 (278)
157 KOG2314|consensus 97.5 0.0004 8.7E-09 66.1 8.2 81 31-112 55-142 (698)
158 PF08777 RRM_3: RNA binding mo 97.5 0.00011 2.5E-09 56.0 3.5 70 122-236 2-76 (105)
159 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00041 8.9E-09 46.0 5.2 52 35-93 2-53 (53)
160 KOG1995|consensus 97.4 0.00017 3.7E-09 65.2 3.7 90 121-241 66-155 (351)
161 KOG4307|consensus 97.3 0.00074 1.6E-08 65.8 7.5 78 33-110 866-943 (944)
162 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0031 6.6E-08 47.6 7.1 79 32-112 4-90 (100)
163 KOG0115|consensus 97.0 0.0012 2.6E-08 57.2 5.4 103 87-237 5-111 (275)
164 KOG2202|consensus 97.0 0.00049 1.1E-08 59.6 3.0 44 200-243 108-151 (260)
165 KOG2314|consensus 97.0 0.0016 3.4E-08 62.2 6.5 76 121-236 58-140 (698)
166 COG5175 MOT2 Transcriptional r 96.9 0.0011 2.4E-08 59.4 4.5 78 122-240 115-203 (480)
167 KOG1855|consensus 96.9 0.0014 3.1E-08 60.6 4.9 77 26-102 223-312 (484)
168 KOG1924|consensus 96.8 0.0021 4.5E-08 63.6 5.5 6 89-94 212-217 (1102)
169 KOG0129|consensus 96.8 0.0036 7.7E-08 59.3 6.8 69 27-95 363-432 (520)
170 PF08675 RNA_bind: RNA binding 96.7 0.0087 1.9E-07 43.1 6.8 57 32-97 7-63 (87)
171 KOG1996|consensus 96.7 0.002 4.4E-08 56.8 4.1 39 204-242 331-369 (378)
172 KOG2202|consensus 96.7 0.0008 1.7E-08 58.3 1.6 64 49-113 83-147 (260)
173 KOG4676|consensus 96.6 0.015 3.3E-07 53.3 9.2 79 122-237 8-86 (479)
174 PF08952 DUF1866: Domain of un 96.4 0.015 3.3E-07 46.6 7.2 55 50-113 52-106 (146)
175 KOG0112|consensus 96.3 0.0042 9.1E-08 62.4 4.3 78 30-113 451-530 (975)
176 KOG2416|consensus 95.9 0.012 2.6E-07 56.7 5.1 78 30-113 440-521 (718)
177 KOG1996|consensus 95.7 0.03 6.6E-07 49.6 6.5 65 48-112 300-365 (378)
178 KOG3152|consensus 95.7 0.0042 9.1E-08 53.9 1.0 80 120-231 73-157 (278)
179 PF07576 BRAP2: BRCA1-associat 95.7 0.12 2.6E-06 39.7 8.9 68 34-103 13-81 (110)
180 PF05172 Nup35_RRM: Nup53/35/4 95.3 0.06 1.3E-06 40.6 6.0 79 121-239 6-91 (100)
181 PF03467 Smg4_UPF3: Smg-4/UPF3 95.3 0.031 6.6E-07 46.8 4.8 72 32-103 5-82 (176)
182 PF08952 DUF1866: Domain of un 95.2 0.048 1E-06 43.8 5.5 37 204-241 72-108 (146)
183 PF14605 Nup35_RRM_2: Nup53/35 94.8 0.039 8.5E-07 36.5 3.4 51 123-219 3-53 (53)
184 KOG2193|consensus 94.7 0.025 5.4E-07 52.5 2.9 77 122-243 2-79 (584)
185 KOG0115|consensus 94.6 0.034 7.3E-07 48.4 3.4 75 35-110 32-110 (275)
186 PF10309 DUF2414: Protein of u 94.6 0.15 3.3E-06 34.7 5.9 54 35-96 6-62 (62)
187 KOG2068|consensus 94.4 0.02 4.3E-07 51.7 1.7 79 35-113 78-162 (327)
188 KOG1855|consensus 94.3 0.12 2.6E-06 48.2 6.3 77 120-225 230-309 (484)
189 KOG2591|consensus 94.0 0.073 1.6E-06 51.1 4.5 70 33-109 174-247 (684)
190 PF15023 DUF4523: Protein of u 93.8 0.2 4.4E-06 39.9 5.9 71 34-112 86-160 (166)
191 KOG2253|consensus 93.8 0.041 9E-07 53.8 2.5 108 30-146 36-160 (668)
192 PF15023 DUF4523: Protein of u 93.6 0.2 4.4E-06 39.9 5.7 37 201-238 124-160 (166)
193 PF04847 Calcipressin: Calcipr 93.5 0.19 4.1E-06 42.3 5.7 61 47-113 8-70 (184)
194 PF11767 SET_assoc: Histone ly 93.2 0.55 1.2E-05 32.5 6.7 55 45-108 11-65 (66)
195 KOG4285|consensus 92.7 0.75 1.6E-05 41.2 8.4 75 33-115 196-271 (350)
196 PF08675 RNA_bind: RNA binding 92.5 0.23 4.9E-06 35.9 4.1 56 121-224 9-64 (87)
197 KOG0804|consensus 91.1 0.64 1.4E-05 43.8 6.5 68 34-103 74-142 (493)
198 PF03467 Smg4_UPF3: Smg-4/UPF3 89.8 0.35 7.5E-06 40.5 3.3 86 121-240 7-98 (176)
199 PF03880 DbpA: DbpA RNA bindin 89.7 1.3 2.8E-05 31.2 5.9 59 44-111 11-74 (74)
200 KOG2135|consensus 89.5 0.22 4.7E-06 47.1 2.1 82 27-115 365-447 (526)
201 PF07292 NID: Nmi/IFP 35 domai 89.4 0.43 9.3E-06 35.0 3.1 65 79-143 1-74 (88)
202 PF10309 DUF2414: Protein of u 88.8 1.1 2.3E-05 30.7 4.5 23 122-145 6-28 (62)
203 KOG4574|consensus 88.0 0.47 1E-05 48.0 3.3 77 122-243 299-377 (1007)
204 KOG2591|consensus 85.3 11 0.00023 36.9 10.5 94 90-234 151-246 (684)
205 PF04847 Calcipressin: Calcipr 85.3 1.4 3.1E-05 37.0 4.4 39 202-240 31-71 (184)
206 PF14111 DUF4283: Domain of un 84.7 1.6 3.5E-05 35.0 4.4 107 36-151 17-135 (153)
207 KOG4285|consensus 84.2 3 6.4E-05 37.5 6.0 44 200-244 230-274 (350)
208 KOG4574|consensus 83.2 0.72 1.6E-05 46.7 2.0 70 38-113 302-373 (1007)
209 PF11767 SET_assoc: Histone ly 82.7 5.1 0.00011 27.7 5.5 30 205-234 36-65 (66)
210 PF03880 DbpA: DbpA RNA bindin 80.9 2.4 5.3E-05 29.8 3.6 35 202-237 40-74 (74)
211 KOG2318|consensus 78.1 2.3 5E-05 41.5 3.4 119 120-239 173-305 (650)
212 KOG2068|consensus 76.9 0.88 1.9E-05 41.4 0.3 36 205-240 128-163 (327)
213 KOG4410|consensus 72.3 6 0.00013 35.3 4.3 56 27-88 323-379 (396)
214 KOG2135|consensus 71.3 3.1 6.8E-05 39.6 2.5 38 203-241 410-447 (526)
215 KOG2318|consensus 70.3 18 0.00038 35.6 7.2 81 31-111 171-305 (650)
216 KOG2253|consensus 69.9 4 8.7E-05 40.4 2.9 79 111-237 30-108 (668)
217 PF10567 Nab6_mRNP_bdg: RNA-re 69.1 12 0.00026 33.6 5.5 83 30-112 11-106 (309)
218 KOG4365|consensus 66.9 1.1 2.3E-05 42.2 -1.5 78 34-112 3-80 (572)
219 KOG4019|consensus 62.8 20 0.00043 29.9 5.3 42 201-242 50-92 (193)
220 PF07576 BRAP2: BRCA1-associat 61.6 28 0.00061 26.6 5.7 35 191-227 45-79 (110)
221 KOG1923|consensus 56.2 52 0.0011 33.6 7.8 10 85-94 87-96 (830)
222 KOG4590|consensus 55.4 38 0.00082 32.2 6.5 20 207-226 78-104 (409)
223 PF02714 DUF221: Domain of unk 55.2 26 0.00055 31.9 5.4 57 79-144 1-57 (325)
224 KOG2891|consensus 52.8 14 0.0003 33.0 2.9 39 29-67 144-194 (445)
225 KOG0804|consensus 48.0 27 0.00059 33.3 4.2 67 121-227 74-140 (493)
226 KOG4410|consensus 45.8 30 0.00065 31.0 3.9 27 122-148 331-357 (396)
227 PF03468 XS: XS domain; Inter 45.6 25 0.00054 27.2 3.1 39 47-88 30-68 (116)
228 KOG2295|consensus 45.6 3.2 6.9E-05 40.3 -2.2 70 33-102 230-299 (648)
229 KOG4019|consensus 44.1 29 0.00063 29.0 3.4 76 33-114 9-90 (193)
230 PF15513 DUF4651: Domain of un 43.9 45 0.00097 22.7 3.7 21 49-69 9-29 (62)
231 KOG3671|consensus 42.1 47 0.001 32.2 4.9 22 77-98 116-137 (569)
232 KOG3671|consensus 42.0 54 0.0012 31.8 5.2 15 46-60 21-35 (569)
233 PF07292 NID: Nmi/IFP 35 domai 40.9 16 0.00035 26.8 1.3 26 31-56 49-74 (88)
234 PF07530 PRE_C2HC: Associated 39.2 62 0.0014 22.4 4.0 62 49-113 2-64 (68)
235 KOG2675|consensus 39.0 31 0.00068 32.8 3.2 8 203-210 146-153 (480)
236 KOG4483|consensus 37.8 65 0.0014 30.4 5.0 56 33-95 390-446 (528)
237 PRK14548 50S ribosomal protein 36.7 99 0.0022 22.4 4.9 56 37-95 23-80 (84)
238 KOG1295|consensus 36.5 51 0.0011 30.8 4.1 73 30-102 3-78 (376)
239 PF09707 Cas_Cas2CT1978: CRISP 36.3 79 0.0017 23.0 4.3 46 35-83 26-71 (86)
240 PF10873 DUF2668: Protein of u 34.6 93 0.002 25.0 4.7 8 295-302 144-151 (155)
241 KOG4483|consensus 32.9 64 0.0014 30.4 4.1 66 121-232 391-456 (528)
242 TIGR03636 L23_arch archaeal ri 32.6 1.3E+02 0.0029 21.3 4.9 56 36-94 15-72 (77)
243 KOG3424|consensus 32.2 98 0.0021 24.0 4.3 45 45-90 34-83 (132)
244 KOG2236|consensus 31.0 73 0.0016 30.6 4.3 16 206-222 318-333 (483)
245 PF02714 DUF221: Domain of unk 28.9 57 0.0012 29.7 3.2 35 205-241 1-35 (325)
246 KOG2391|consensus 27.5 1.3E+02 0.0027 27.9 5.0 10 202-211 84-93 (365)
247 PF11823 DUF3343: Protein of u 27.3 86 0.0019 21.7 3.2 28 77-104 2-29 (73)
248 smart00596 PRE_C2HC PRE_C2HC d 26.3 1.1E+02 0.0023 21.4 3.4 62 49-113 2-64 (69)
249 PRK11558 putative ssRNA endonu 25.2 1.3E+02 0.0028 22.5 3.9 49 35-86 28-76 (97)
250 KOG4672|consensus 24.4 1.7E+02 0.0037 27.8 5.3 8 50-57 51-58 (487)
251 PF11823 DUF3343: Protein of u 23.9 97 0.0021 21.4 3.0 25 203-227 2-26 (73)
252 KOG4213|consensus 23.4 1.2E+02 0.0027 25.4 3.8 59 33-95 110-169 (205)
253 COG0150 PurM Phosphoribosylami 23.0 27 0.00058 32.3 -0.1 48 48-99 275-322 (345)
254 CHL00123 rps6 ribosomal protei 22.2 1.5E+02 0.0032 22.0 3.8 36 185-220 44-80 (97)
255 PF05308 Mito_fiss_reg: Mitoch 21.7 1.7E+02 0.0038 25.9 4.7 9 214-222 119-127 (253)
256 PF11411 DNA_ligase_IV: DNA li 21.6 64 0.0014 19.4 1.3 15 45-59 20-34 (36)
257 KOG0156|consensus 21.0 1.7E+02 0.0036 28.7 4.9 61 36-106 34-97 (489)
258 CHL00030 rpl23 ribosomal prote 20.8 1.6E+02 0.0035 21.7 3.7 35 36-70 20-56 (93)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.9e-34 Score=266.44 Aligned_cols=208 Identities=29% Similarity=0.517 Sum_probs=175.2
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
...+|||+|||..+|+++|+++|+.||+|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|||..+.|+.|+|+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46799999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred CccccccccccccccCCCchhcHHHHHHHHhhcCcccchh----------------------------hhhhhhhhcC--
Q psy3016 113 SHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP----------------------------KIMNMIKLYG-- 162 (305)
Q Consensus 113 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~----------------------------~~~~~~~~~~-- 162 (305)
+..... ..++|||+||+..+++++|+++|+.||.|..+. ..+|+..+.|
T Consensus 82 ~~~~~~-~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~ 160 (352)
T TIGR01661 82 PSSDSI-KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCT 160 (352)
T ss_pred cccccc-ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCc
Confidence 654322 356899999999999999999999999886542 1255555555
Q ss_pred cceeeecCcccccc------------------------------------------------------------------
Q psy3016 163 KPIRVNKASSHQKN------------------------------------------------------------------ 176 (305)
Q Consensus 163 ~~~~~~~~~~~~~~------------------------------------------------------------------ 176 (305)
..+.+.++......
T Consensus 161 ~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR01661 161 EPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHA 240 (352)
T ss_pred eeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccc
Confidence 34556555322100
Q ss_pred -------------------------CCCcceeEeccCCCC--------------------cccCCCCCCccceEEEEeCC
Q psy3016 177 -------------------------LDVGANIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYAS 211 (305)
Q Consensus 177 -------------------------~~~~~~~~~~~l~~~--------------------i~~d~~~~~~~g~afV~f~~ 211 (305)
...+.+||++||+.. +++|..++.++|||||+|.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~ 320 (352)
T TIGR01661 241 AQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTN 320 (352)
T ss_pred cccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECC
Confidence 011236999999976 57787889999999999999
Q ss_pred hHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 212 FEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 212 ~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
.++|.+|+.+|||.+|+||.|+|.|+..+.
T Consensus 321 ~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 321 YDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 999999999999999999999999987664
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1e-33 Score=259.94 Aligned_cols=173 Identities=25% Similarity=0.464 Sum_probs=157.4
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||.++|+++|+++|+.||+|.+|+|+.|..+++++|||||+|.+.++|++|++.|++..+.++.|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eCCCccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCC
Q psy3016 110 KASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLD 189 (305)
Q Consensus 110 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 189 (305)
++.+..... ...+|||+||+..+|+++|+++|++||.|..+
T Consensus 183 ~a~p~~~~~-~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v-------------------------------------- 223 (346)
T TIGR01659 183 YARPGGESI-KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQK-------------------------------------- 223 (346)
T ss_pred ccccccccc-ccceeEEeCCCCcccHHHHHHHHHhcCCEEEE--------------------------------------
Confidence 987644322 35689999999999999999999999999877
Q ss_pred CCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecC--eeeEEEEeeecCC
Q psy3016 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCN--RPISVSYAFKKDS 242 (305)
Q Consensus 190 ~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g--~~l~v~~a~~~~~ 242 (305)
+++.|..+++++|||||+|.+.++|.+||+.||+..+.+ +.|+|.++.....
T Consensus 224 -~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 224 -NILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred -EEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 678888899999999999999999999999999998865 7899999876543
No 3
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=3.1e-33 Score=274.76 Aligned_cols=212 Identities=30% Similarity=0.552 Sum_probs=181.7
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
...+..+|||+|||.++|+++|+++|+.||.|.+|+++.+. +|+++|||||+|.+.++|.+|++.+||..+.|+.|.|.
T Consensus 84 ~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~ 162 (562)
T TIGR01628 84 RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVG 162 (562)
T ss_pred cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEe
Confidence 44456789999999999999999999999999999999885 77899999999999999999999999999999999998
Q ss_pred eCCCcccc----ccccccccccCCCchhcHHHHHHHHhhcCcccchh---------------------------hhhhhh
Q psy3016 110 KASSHQKN----LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------------KIMNMI 158 (305)
Q Consensus 110 ~~~~~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~---------------------------~~~~~~ 158 (305)
....+... .....+|||+||+.++|+++|+++|+.||.|..+. ..+++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~ 242 (562)
T TIGR01628 163 RFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGK 242 (562)
T ss_pred ccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCc
Confidence 76654333 23457899999999999999999999999987752 225667
Q ss_pred hhc----CcceeeecCcccccc-----------------CCCcceeEeccCCCC--------------------cccCCC
Q psy3016 159 KLY----GKPIRVNKASSHQKN-----------------LDVGANIFIGNLDPE--------------------IMRDPD 197 (305)
Q Consensus 159 ~~~----~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~--------------------i~~d~~ 197 (305)
.+. |+.+.+.+++...+. ...+.+||++||+.. ++.| .
T Consensus 243 ~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~ 321 (562)
T TIGR01628 243 KIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-E 321 (562)
T ss_pred EecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-C
Confidence 777 888888887765332 345688999999876 4566 5
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.++..+..+
T Consensus 322 ~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 322 KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 6899999999999999999999999999999999999999876543
No 4
>KOG0148|consensus
Probab=100.00 E-value=2.6e-33 Score=238.14 Aligned_cols=167 Identities=28% Similarity=0.483 Sum_probs=154.0
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
..-.||||.|...++.++|++.|.+||+|.+++|++|..++++||||||.|.+.++|++||..|||.-|.+|.|+.+|+.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 35589999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cccccc---------------cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccC
Q psy3016 113 SHQKNL---------------DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNL 177 (305)
Q Consensus 113 ~~~~~~---------------~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (305)
.+..+. ...++|||+|++..+||++|++.|.+||.|.++
T Consensus 141 RKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EV-------------------------- 194 (321)
T KOG0148|consen 141 RKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEV-------------------------- 194 (321)
T ss_pred cCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEE--------------------------
Confidence 765322 235889999999999999999999999999987
Q ss_pred CCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCcC
Q psy3016 178 DVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244 (305)
Q Consensus 178 ~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~~ 244 (305)
+++.| +||+||+|++.|+|.+||..+|++++.|..++|.|.++..+..
T Consensus 195 -------------RvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 195 -------------RVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred -------------EEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCCC
Confidence 56666 8999999999999999999999999999999999998876543
No 5
>KOG0131|consensus
Probab=100.00 E-value=1.2e-32 Score=221.83 Aligned_cols=194 Identities=78% Similarity=1.265 Sum_probs=183.2
Q ss_pred CCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
..+.++..|||||||+..++++.|+++|-+.|+|.++.+.+|+.+...+|||||+|.++|+|+-|++-||+..+.|+.|+
T Consensus 3 ~~~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIr 82 (203)
T KOG0131|consen 3 IIERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIR 82 (203)
T ss_pred ccccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeE
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEecc
Q psy3016 108 VNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGN 187 (305)
Q Consensus 108 v~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (305)
|..+.....+.+...+|||+||++.+++..|+++|+.||.+....
T Consensus 83 v~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P----------------------------------- 127 (203)
T KOG0131|consen 83 VNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPP----------------------------------- 127 (203)
T ss_pred EEecccccccccccccccccccCcchhHHHHHHHHHhccccccCC-----------------------------------
Confidence 999997777788889999999999999999999999999998643
Q ss_pred CCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCcCCCCCchHHhhhhhcC
Q psy3016 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259 (305)
Q Consensus 188 l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~ 259 (305)
+||+|+.+|+++||+||.|++.+.+.+|+..+||+.+++++++|++++.++.++.+++....++.+.+.
T Consensus 128 ---~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg~~~g~~~~rllaa~~ 196 (203)
T KOG0131|consen 128 ---KIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKGERHGTAAERLLAAQD 196 (203)
T ss_pred ---cccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCcccCCCHHHHHhhccC
Confidence 679999999999999999999999999999999999999999999999999999999999999888873
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=5.5e-32 Score=261.05 Aligned_cols=174 Identities=25% Similarity=0.433 Sum_probs=157.8
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++||||||+..+++++|+++|+.||+|.+|+++.|+.+++++|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 103 a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 103 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred hhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eCCCccc----------cccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCC
Q psy3016 110 KASSHQK----------NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDV 179 (305)
Q Consensus 110 ~~~~~~~----------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (305)
+...... .....++|||+||+.++++++|+++|+.||.|..+
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~sv---------------------------- 234 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKC---------------------------- 234 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEE----------------------------
Confidence 7553211 11234789999999999999999999999999987
Q ss_pred cceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 180 GANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 180 ~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
.+++|..+++++|||||+|++.++|.+|+..||+..++|+.|+|.++.....
T Consensus 235 -----------rl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~ 286 (612)
T TIGR01645 235 -----------QLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPD 286 (612)
T ss_pred -----------EEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCcc
Confidence 7788888899999999999999999999999999999999999999886543
No 7
>KOG0144|consensus
Probab=99.98 E-value=1.1e-31 Score=241.10 Aligned_cols=183 Identities=29% Similarity=0.531 Sum_probs=164.1
Q ss_pred cccCCCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCc-e
Q psy3016 22 TKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMI-K 100 (305)
Q Consensus 22 ~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~-~ 100 (305)
..+...+..+.+.-++|||-||+.++|.||+++|++||.|.+|.|++|+.++.++|||||+|.+.++|.+|+..|+++ .
T Consensus 22 ~~~~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~kt 101 (510)
T KOG0144|consen 22 GSLDHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKT 101 (510)
T ss_pred CCCCCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccc
Confidence 334455556677789999999999999999999999999999999999999999999999999999999999999875 5
Q ss_pred eCC--eeeEEeeCCCccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCC
Q psy3016 101 LYG--KPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLD 178 (305)
Q Consensus 101 ~~g--~~l~v~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (305)
+.| +.|.|+++....++...+++|||+-|+..+||.+++++|.+||.|+.|
T Consensus 102 lpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~--------------------------- 154 (510)
T KOG0144|consen 102 LPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDC--------------------------- 154 (510)
T ss_pred cCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchh---------------------------
Confidence 555 689999999888887778999999999999999999999999999987
Q ss_pred CcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCee-e--cCeeeEEEEeeecCCcC
Q psy3016 179 VGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQY-L--CNRPISVSYAFKKDSKG 244 (305)
Q Consensus 179 ~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~-~--~g~~l~v~~a~~~~~~~ 244 (305)
.|++|.. +.+||||||+|++.+.|..||++|||.. + +..+|.|.||..+.++.
T Consensus 155 ------------~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 155 ------------YILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred ------------hheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 7899965 9999999999999999999999999975 3 56799999998876654
No 8
>KOG0117|consensus
Probab=99.97 E-value=4e-31 Score=238.38 Aligned_cols=209 Identities=23% Similarity=0.370 Sum_probs=177.6
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeC-CeeeEEe
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLY-GKPIRVN 109 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~-g~~l~v~ 109 (305)
....+.||||.||.++.|++|..+|++.|+|.+++||.|+.+|.++|||||+|.+.+.|++||+.||+.+|. |+.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 355689999999999999999999999999999999999999999999999999999999999999999885 8999998
Q ss_pred eCCCccccccccccccccCCCchhcHHHHHHHHhhcCcccchh-------------------------------hhhhh-
Q psy3016 110 KASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP-------------------------------KIMNM- 157 (305)
Q Consensus 110 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~-------------------------------~~~~~- 157 (305)
.+... ++|||+|+|.++++++|.+.+++.++-.... +++++
T Consensus 160 ~Svan-------~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~ 232 (506)
T KOG0117|consen 160 VSVAN-------CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGK 232 (506)
T ss_pred Eeeec-------ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCc
Confidence 77653 6799999999999999999999877544321 22222
Q ss_pred hhhcCcceeeecCccccccCCC----cceeEeccCCCCcccCCC------------CCCccceEEEEeCChHHHHHHHHH
Q psy3016 158 IKLYGKPIRVNKASSHQKNLDV----GANIFIGNLDPEIMRDPD------------TGNSKGFAFINYASFEASDASIDA 221 (305)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~i~~d~~------------~~~~~g~afV~f~~~~~A~~Al~~ 221 (305)
+++.|+-+.|+|++...+..+. ..-||++||...+..+.. -.+.+.||||+|.+.++|.+|++.
T Consensus 233 ~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rDYaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 233 IKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRDYAFVHFAEREDAVKAMKE 312 (506)
T ss_pred eeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccceeEEeecchHHHHHHHHH
Confidence 7899999999999997554443 367899999987533220 034578999999999999999999
Q ss_pred hcCeeecCeeeEEEEeeecCCcCCC
Q psy3016 222 MHGQYLCNRPISVSYAFKKDSKGDR 246 (305)
Q Consensus 222 l~~~~~~g~~l~v~~a~~~~~~~~~ 246 (305)
+||++++|..|.|.+|++.+.++..
T Consensus 313 ~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 313 TNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred hcCceecCceEEEEecCChhhhccc
Confidence 9999999999999999988765443
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=1.5e-29 Score=248.70 Aligned_cols=206 Identities=36% Similarity=0.626 Sum_probs=175.4
Q ss_pred eEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCCcc
Q psy3016 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQ 115 (305)
Q Consensus 36 ~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~~~ 115 (305)
+|||||||.++||++|+++|+.||.|.+|+|.+|..+++++|||||+|.+.++|++|++.+++..+.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 79999999999999999999999999999999999889999999999999999999999999999999999999986433
Q ss_pred -ccccccccccccCCCchhcHHHHHHHHhhcCcccchhh---------------------------hhhhhhhcCcceee
Q psy3016 116 -KNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK---------------------------IMNMIKLYGKPIRV 167 (305)
Q Consensus 116 -~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~---------------------------~~~~~~~~~~~~~~ 167 (305)
.......+|||+||+.++++++|+++|+.||.|..|.. .+|+..++|+.+.+
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v 161 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYV 161 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEE
Confidence 22334568999999999999999999999999987632 25556677888887
Q ss_pred ecCccccc----cCCCcceeEeccCCCCc--------------------ccCCCCCCccceEEEEeCChHHHHHHHHHhc
Q psy3016 168 NKASSHQK----NLDVGANIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASIDAMH 223 (305)
Q Consensus 168 ~~~~~~~~----~~~~~~~~~~~~l~~~i--------------------~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~ 223 (305)
........ ......+||++||+..+ +.| .++.++|||||+|.+.++|.+|++.||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~ 240 (562)
T TIGR01628 162 GRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMN 240 (562)
T ss_pred eccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 66554322 23345789999998763 344 458899999999999999999999999
Q ss_pred Ceeec----CeeeEEEEeeecCC
Q psy3016 224 GQYLC----NRPISVSYAFKKDS 242 (305)
Q Consensus 224 ~~~~~----g~~l~v~~a~~~~~ 242 (305)
|..+. |+.|.|.++..+..
T Consensus 241 g~~i~~~~~g~~l~v~~a~~k~e 263 (562)
T TIGR01628 241 GKKIGLAKEGKKLYVGRAQKRAE 263 (562)
T ss_pred CcEecccccceeeEeecccChhh
Confidence 99999 99999998865543
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=3.3e-29 Score=240.43 Aligned_cols=168 Identities=32% Similarity=0.550 Sum_probs=152.8
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
...++|||+|||..+++++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|.+|+. |+|..+.|+.|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 456799999999999999999999999999999999999899999999999999999999998 8999999999999876
Q ss_pred CCcccc-----------ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCc
Q psy3016 112 SSHQKN-----------LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVG 180 (305)
Q Consensus 112 ~~~~~~-----------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (305)
...... .....+|||+||+..+|+++|.++|+.||.|..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v----------------------------- 216 (457)
T TIGR01622 166 QAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDV----------------------------- 216 (457)
T ss_pred chhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEE-----------------------------
Confidence 532211 1124789999999999999999999999999877
Q ss_pred ceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeee
Q psy3016 181 ANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239 (305)
Q Consensus 181 ~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 239 (305)
.++.|..+|.++|||||+|.+.++|.+|+..|||..+.|+.|.|.|+..
T Consensus 217 ----------~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 217 ----------QLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred ----------EEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 6788888889999999999999999999999999999999999999863
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=1.3e-28 Score=237.39 Aligned_cols=205 Identities=22% Similarity=0.418 Sum_probs=167.1
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeC-CeeeEEe
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLY-GKPIRVN 109 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~-g~~l~v~ 109 (305)
....++|||+|||.+++|++|+++|++||.|.+|+|+.| .++.++|||||+|.+.++|++||+.||+..+. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 445689999999999999999999999999999999999 68999999999999999999999999998885 7888887
Q ss_pred eCCCccccccccccccccCCCchhcHHHHHHHHhhcCcc-cchh------------------------------hhhh-h
Q psy3016 110 KASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI-LQTP------------------------------KIMN-M 157 (305)
Q Consensus 110 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v-~~~~------------------------------~~~~-~ 157 (305)
++.. .++|||+|||.++++++|.+.|+.++.. ..+. ++++ .
T Consensus 134 ~S~~-------~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk 206 (578)
T TIGR01648 134 ISVD-------NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGR 206 (578)
T ss_pred cccc-------CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccc
Confidence 6542 4689999999999999999999998641 1110 1111 1
Q ss_pred hhhcCcceeeecCcccccc----CCCcceeEeccCCCCcccCC------CC--------CCccceEEEEeCChHHHHHHH
Q psy3016 158 IKLYGKPIRVNKASSHQKN----LDVGANIFIGNLDPEIMRDP------DT--------GNSKGFAFINYASFEASDASI 219 (305)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~d~------~~--------~~~~g~afV~f~~~~~A~~Al 219 (305)
..+.|+.+.|.|+..+... .....+||++||+..+-.+. .. ...++||||+|++.++|.+|+
T Consensus 207 i~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRDYAFVHFEDREDAVKAM 286 (578)
T ss_pred eEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecCeEEEEeCCHHHHHHHH
Confidence 3467888999998875332 22357899999998742111 01 245789999999999999999
Q ss_pred HHhcCeeecCeeeEEEEeeecCCc
Q psy3016 220 DAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 220 ~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
+.||+.+|+|+.|+|+|+++.+..
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCcc
Confidence 999999999999999999876544
No 12
>KOG0145|consensus
Probab=99.96 E-value=1.3e-28 Score=208.52 Aligned_cols=173 Identities=27% Similarity=0.526 Sum_probs=158.8
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
..+...+|.|.-||..+|++||+.+|...|+|++|++++|+.+|.+.||+||.|.+++||++|+..|||..+..+.|+|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCC
Q psy3016 110 KASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLD 189 (305)
Q Consensus 110 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 189 (305)
++.+...... ..+|||.+||..+|..+|.++|.+||.|...
T Consensus 117 yARPSs~~Ik-~aNLYvSGlPktMtqkelE~iFs~fGrIItS-------------------------------------- 157 (360)
T KOG0145|consen 117 YARPSSDSIK-DANLYVSGLPKTMTQKELEQIFSPFGRIITS-------------------------------------- 157 (360)
T ss_pred eccCChhhhc-ccceEEecCCccchHHHHHHHHHHhhhhhhh--------------------------------------
Confidence 9988765443 5789999999999999999999999999765
Q ss_pred CCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeee--cCeeeEEEEeeecCC
Q psy3016 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYL--CNRPISVSYAFKKDS 242 (305)
Q Consensus 190 ~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~--~g~~l~v~~a~~~~~ 242 (305)
+|..|.-+|.++|.+||+|+..++|+.||..|||..- +..+|+|.|+.....
T Consensus 158 -RiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 158 -RILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred -hhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCccc
Confidence 6788889999999999999999999999999999986 446899999976643
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=7.5e-26 Score=218.08 Aligned_cols=162 Identities=23% Similarity=0.396 Sum_probs=137.6
Q ss_pred CCceEEEcCCCc-cccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 33 GDATIYVGGLDD-KVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 33 ~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
..++|||+||+. .+|+++|+++|+.||.|.+|+++.++ +|||||+|.+.++|..|++.|||..+.|+.|+|.++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 567999999997 69999999999999999999998863 599999999999999999999999999999999987
Q ss_pred CCccc----c--------------------------------ccccccccccCCCchhcHHHHHHHHhhcCc--ccchhh
Q psy3016 112 SSHQK----N--------------------------------LDVGANIFIGNLDPEVDEKLLYDTFSAFGV--ILQTPK 153 (305)
Q Consensus 112 ~~~~~----~--------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~--v~~~~~ 153 (305)
..... . .....+|||+|||.++|+++|+++|+.||. +..+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~i-- 426 (481)
T TIGR01649 349 KQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKF-- 426 (481)
T ss_pred ccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEE--
Confidence 53210 0 012458999999999999999999999998 5443
Q ss_pred hhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCee--
Q psy3016 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRP-- 231 (305)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~-- 231 (305)
+++.+ . +..+++|||+|++.++|.+|+..||++.+.++.
T Consensus 427 -------------------------------------k~~~~-~-~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~ 467 (481)
T TIGR01649 427 -------------------------------------KFFPK-D-NERSKMGLLEWESVEDAVEALIALNHHQLNEPNGS 467 (481)
T ss_pred -------------------------------------EEecC-C-CCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCC
Confidence 22222 2 335889999999999999999999999999985
Q ss_pred ----eEEEEeeec
Q psy3016 232 ----ISVSYAFKK 240 (305)
Q Consensus 232 ----l~v~~a~~~ 240 (305)
|+|+|++.+
T Consensus 468 ~~~~lkv~fs~~~ 480 (481)
T TIGR01649 468 APYHLKVSFSTSR 480 (481)
T ss_pred ccceEEEEeccCC
Confidence 999998653
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=1.2e-25 Score=218.63 Aligned_cols=172 Identities=21% Similarity=0.294 Sum_probs=145.1
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEee
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~ 110 (305)
.+..++|||+|||..+|+++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|..|++.|+|..+.|+.|.|.+
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred CCCcccc---------------------------ccccccccccCCCch----------hcHHHHHHHHhhcCcccchhh
Q psy3016 111 ASSHQKN---------------------------LDVGANIFIGNLDPE----------VDEKLLYDTFSAFGVILQTPK 153 (305)
Q Consensus 111 ~~~~~~~---------------------------~~~~~~l~v~nl~~~----------~t~~~l~~~f~~~g~v~~~~~ 153 (305)
+...... .....+|+|.|+... ...++|++.|+.||.|..+
T Consensus 372 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v-- 449 (509)
T TIGR01642 372 ACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINI-- 449 (509)
T ss_pred CccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEE--
Confidence 7532110 012466888888532 1236799999999999876
Q ss_pred hhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccC---CCCCCccceEEEEeCChHHHHHHHHHhcCeeecCe
Q psy3016 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRD---PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNR 230 (305)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d---~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~ 230 (305)
.|+++ ..++.+.|+|||+|++.++|.+|+.+|||.+|.|+
T Consensus 450 -------------------------------------~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr 492 (509)
T TIGR01642 450 -------------------------------------VIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDR 492 (509)
T ss_pred -------------------------------------EeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 34433 23456789999999999999999999999999999
Q ss_pred eeEEEEeeecC
Q psy3016 231 PISVSYAFKKD 241 (305)
Q Consensus 231 ~l~v~~a~~~~ 241 (305)
.|.|.|.....
T Consensus 493 ~v~~~~~~~~~ 503 (509)
T TIGR01642 493 VVVAAFYGEDC 503 (509)
T ss_pred EEEEEEeCHHH
Confidence 99999986543
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=6.6e-26 Score=220.38 Aligned_cols=165 Identities=24% Similarity=0.426 Sum_probs=140.3
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccC------------CCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhc
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQS------------GPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMN 97 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~------------G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~ 97 (305)
.....++|||||||..+|+++|+++|+.+ +.|..+.+ +..+|||||+|.+.++|..||. |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 34467899999999999999999999974 34555554 2356999999999999999995 99
Q ss_pred CceeCCeeeEEeeCCCccc----------------------------cccccccccccCCCchhcHHHHHHHHhhcCccc
Q psy3016 98 MIKLYGKPIRVNKASSHQK----------------------------NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL 149 (305)
Q Consensus 98 g~~~~g~~l~v~~~~~~~~----------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~ 149 (305)
|..+.|+.|.|.+...... ..+...+|||+||+..+|+++|.++|+.||.|.
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~ 323 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLK 323 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 9999999999975432210 012246899999999999999999999999998
Q ss_pred chhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecC
Q psy3016 150 QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCN 229 (305)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g 229 (305)
.+ .++.|..+|.++|||||+|.+.++|..|+..|||..|.|
T Consensus 324 ~~---------------------------------------~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~ 364 (509)
T TIGR01642 324 AF---------------------------------------NLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGD 364 (509)
T ss_pred EE---------------------------------------EEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 76 667888889999999999999999999999999999999
Q ss_pred eeeEEEEeeec
Q psy3016 230 RPISVSYAFKK 240 (305)
Q Consensus 230 ~~l~v~~a~~~ 240 (305)
+.|.|.++...
T Consensus 365 ~~l~v~~a~~~ 375 (509)
T TIGR01642 365 NKLHVQRACVG 375 (509)
T ss_pred eEEEEEECccC
Confidence 99999998654
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=1.2e-25 Score=216.66 Aligned_cols=159 Identities=21% Similarity=0.316 Sum_probs=136.1
Q ss_pred CceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHh--cCceeCCeeeEEeeC
Q psy3016 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM--NMIKLYGKPIRVNKA 111 (305)
Q Consensus 34 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l--~g~~~~g~~l~v~~~ 111 (305)
+++|||+|||..+|+++|+++|+.||.|.+|+++++ ++||||+|.+.++|++|++.+ ++..+.|+.|.|+++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 679999999999999999999999999999999864 489999999999999999975 678999999999998
Q ss_pred CCccccc-----------cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCc
Q psy3016 112 SSHQKNL-----------DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVG 180 (305)
Q Consensus 112 ~~~~~~~-----------~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (305)
....... ....+|||+||+..+|+++|+++|+.||.|..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v----------------------------- 126 (481)
T TIGR01649 76 TSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRI----------------------------- 126 (481)
T ss_pred CCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEE-----------------------------
Confidence 6532111 112378999999999999999999999999876
Q ss_pred ceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecC--eeeEEEEeeecC
Q psy3016 181 ANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCN--RPISVSYAFKKD 241 (305)
Q Consensus 181 ~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g--~~l~v~~a~~~~ 241 (305)
.++++. ..++|||+|.+.++|.+|++.|||..+.+ ++|+|.|++...
T Consensus 127 ----------~i~~~~----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 127 ----------VTFTKN----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred ----------EEEecC----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 445442 24689999999999999999999999954 589999987543
No 17
>KOG0145|consensus
Probab=99.94 E-value=4.7e-26 Score=192.98 Aligned_cols=176 Identities=30% Similarity=0.516 Sum_probs=155.1
Q ss_pred CCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCC--
Q psy3016 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYG-- 103 (305)
Q Consensus 26 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g-- 103 (305)
+|....-...+|||.+||+.+|..||..+|++||.|..-+|..|..+|-++|.|||.|+..++|+.||+.|||..-.|
T Consensus 119 RPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~t 198 (360)
T KOG0145|consen 119 RPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCT 198 (360)
T ss_pred cCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCC
Confidence 444445556699999999999999999999999999999999999999999999999999999999999999987766
Q ss_pred eeeEEeeCCCcccc--------------------------------------------------------------cccc
Q psy3016 104 KPIRVNKASSHQKN--------------------------------------------------------------LDVG 121 (305)
Q Consensus 104 ~~l~v~~~~~~~~~--------------------------------------------------------------~~~~ 121 (305)
..|.|.++.....+ ....
T Consensus 199 epItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g 278 (360)
T KOG0145|consen 199 EPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGG 278 (360)
T ss_pred CCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCe
Confidence 47888776532110 0013
Q ss_pred ccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCc
Q psy3016 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201 (305)
Q Consensus 122 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~ 201 (305)
.||||.||.++.+|..|+++|.+||.|..+ +|++|..++++
T Consensus 279 ~ciFvYNLspd~de~~LWQlFgpFGAv~nV---------------------------------------KvirD~ttnkC 319 (360)
T KOG0145|consen 279 WCIFVYNLSPDADESILWQLFGPFGAVTNV---------------------------------------KVIRDFTTNKC 319 (360)
T ss_pred eEEEEEecCCCchHhHHHHHhCcccceeeE---------------------------------------EEEecCCcccc
Confidence 689999999999999999999999999987 88999999999
Q ss_pred cceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 202 ~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
+||+||.+.+.++|..|+..|||..+++|.|.|+|...+
T Consensus 320 KGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 320 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred cceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 999999999999999999999999999999999997544
No 18
>KOG0124|consensus
Probab=99.93 E-value=2.9e-25 Score=196.02 Aligned_cols=169 Identities=25% Similarity=0.461 Sum_probs=155.6
Q ss_pred CceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCC
Q psy3016 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS 113 (305)
Q Consensus 34 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~ 113 (305)
-|+||||.|.+.+.||.|+..|..||+|.+|++..|..+++.||||||+|+-.|.|..|++.+||..+.||.|+|.+...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999997665
Q ss_pred ccc----------cccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCccee
Q psy3016 114 HQK----------NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183 (305)
Q Consensus 114 ~~~----------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (305)
... +....++|||..+..++++++|+.+|+.||+|..|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C-------------------------------- 240 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKC-------------------------------- 240 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeE--------------------------------
Confidence 322 22346889999999999999999999999999999
Q ss_pred EeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 184 ~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
++.+++..+.++||+|++|.+..+-..|+..||-..++|.-|+|--+-...
T Consensus 241 -------~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 241 -------QLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred -------EeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCC
Confidence 778888888999999999999999999999999999999999998776544
No 19
>KOG0109|consensus
Probab=99.93 E-value=1.8e-25 Score=192.17 Aligned_cols=152 Identities=22% Similarity=0.451 Sum_probs=139.1
Q ss_pred ceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCCc
Q psy3016 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSH 114 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~~ 114 (305)
..|||||||..+++.+|+.+|++||.|.+|+|++ .||||+.++...|+.||.+|++..|+|..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec--------ccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 4799999999999999999999999999999966 69999999999999999999999999999999998877
Q ss_pred cccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCccc
Q psy3016 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMR 194 (305)
Q Consensus 115 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 194 (305)
. ....+|+|+|+.+.++.++|+..|++||.|.+| +|+
T Consensus 75 s---k~stkl~vgNis~tctn~ElRa~fe~ygpviec---------------------------------------div- 111 (346)
T KOG0109|consen 75 S---KASTKLHVGNISPTCTNQELRAKFEKYGPVIEC---------------------------------------DIV- 111 (346)
T ss_pred C---CCccccccCCCCccccCHHHhhhhcccCCceee---------------------------------------eee-
Confidence 3 345789999999999999999999999999988 333
Q ss_pred CCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCcC
Q psy3016 195 DPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244 (305)
Q Consensus 195 d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~~ 244 (305)
++|+||+|+-.++|..|++.|+|++|.|++++|..+..+-.-.
T Consensus 112 -------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrta 154 (346)
T KOG0109|consen 112 -------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTA 154 (346)
T ss_pred -------cceeEEEEeeccchHHHHhcccccccccceeeeeeeccccccC
Confidence 6699999999999999999999999999999999987655443
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=5.3e-24 Score=204.42 Aligned_cols=166 Identities=25% Similarity=0.434 Sum_probs=139.0
Q ss_pred CceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCC
Q psy3016 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS 113 (305)
Q Consensus 34 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~ 113 (305)
.++|||+|||..+|+++|+++|+.||.|..|.++.+..+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68999999999999999999999999999999999988889999999999999999999999999999999999999532
Q ss_pred ccc-----------------------------------------------------------------------------
Q psy3016 114 HQK----------------------------------------------------------------------------- 116 (305)
Q Consensus 114 ~~~----------------------------------------------------------------------------- 116 (305)
...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 100
Q ss_pred ------------cccccccccccCCCchhc----------HHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCcccc
Q psy3016 117 ------------NLDVGANIFIGNLDPEVD----------EKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQ 174 (305)
Q Consensus 117 ------------~~~~~~~l~v~nl~~~~t----------~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (305)
......+|+|.|+-...+ .++|.+.|++||.|..+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v----------------------- 402 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHI----------------------- 402 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEE-----------------------
Confidence 001234567777743322 36799999999999865
Q ss_pred ccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 175 KNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 175 ~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
.+. .....|++||+|.+.++|.+|++.|||++|+|+.|.+.|......
T Consensus 403 ----------------~v~----~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~~ 450 (457)
T TIGR01622 403 ----------------YVD----TKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDVY 450 (457)
T ss_pred ----------------EEe----CCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHHH
Confidence 111 234679999999999999999999999999999999999866543
No 21
>KOG0127|consensus
Probab=99.91 E-value=3e-24 Score=198.10 Aligned_cols=167 Identities=26% Similarity=0.448 Sum_probs=150.5
Q ss_pred ceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCCc
Q psy3016 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSH 114 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~~ 114 (305)
.||||++||++++.++|.++|+.+|+|.+|.++.++.++.++|||||+|.-.|++++|+..+++..+.||.|.|..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred cccc-------------------------cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeec
Q psy3016 115 QKNL-------------------------DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNK 169 (305)
Q Consensus 115 ~~~~-------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~ 169 (305)
.+.. .....|.|.|||+.+...+|..+|+.||.|..+
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei------------------ 147 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEI------------------ 147 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEE------------------
Confidence 3211 014579999999999999999999999999876
Q ss_pred CccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 170 ASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
.|.+..+ |+-.|||||.|....+|.+|++.+|+..|+||+|-|.||-.++
T Consensus 148 ---------------------~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 148 ---------------------VIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred ---------------------EcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 5565544 5556999999999999999999999999999999999997765
No 22
>KOG0127|consensus
Probab=99.90 E-value=4.9e-23 Score=190.15 Aligned_cols=199 Identities=26% Similarity=0.417 Sum_probs=161.0
Q ss_pred CCccceeecCccccccC---------cccccCCCCCcCC----CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEccc
Q psy3016 3 LGREIQAGISTPCLQSL---------SQTKLEGGGESGD----GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKD 69 (305)
Q Consensus 3 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~----~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~ 69 (305)
+||.|.+.....+..+. ......++.+... ..-+|+|.|||..+.+.+|..+|+.||.|.+|.|.+.
T Consensus 73 ~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k 152 (678)
T KOG0127|consen 73 EGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK 152 (678)
T ss_pred cceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC
Confidence 57777777776444333 1122222222222 2458999999999999999999999999999999977
Q ss_pred CCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCCccc---------------------------------
Q psy3016 70 RVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQK--------------------------------- 116 (305)
Q Consensus 70 ~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~~~~--------------------------------- 116 (305)
.. |.-.|||||+|....+|..|++.+|+..|.||.|-|.|+.++..
T Consensus 153 ~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~ 231 (678)
T KOG0127|consen 153 KD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFD 231 (678)
T ss_pred CC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccc
Confidence 64 45559999999999999999999999999999999999864210
Q ss_pred --------------c------------------------------------------ccccccccccCCCchhcHHHHHH
Q psy3016 117 --------------N------------------------------------------LDVGANIFIGNLDPEVDEKLLYD 140 (305)
Q Consensus 117 --------------~------------------------------------------~~~~~~l~v~nl~~~~t~~~l~~ 140 (305)
. .....+|||.||++++|+++|.+
T Consensus 232 ~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~ 311 (678)
T KOG0127|consen 232 EEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKE 311 (678)
T ss_pred hhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHH
Confidence 0 00026899999999999999999
Q ss_pred HHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHH
Q psy3016 141 TFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASID 220 (305)
Q Consensus 141 ~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~ 220 (305)
.|..||.|.+. .++.|+.|+.++|.|||.|.+..+|.+||.
T Consensus 312 ~fskFG~v~ya---------------------------------------~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 312 HFSKFGEVKYA---------------------------------------IIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred HHHhhccceeE---------------------------------------EEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 99999999987 689999999999999999999999999998
Q ss_pred Hh-----cC-eeecCeeeEEEEeeecC
Q psy3016 221 AM-----HG-QYLCNRPISVSYAFKKD 241 (305)
Q Consensus 221 ~l-----~~-~~~~g~~l~v~~a~~~~ 241 (305)
+- .| ..++||.|.|..+-.+.
T Consensus 353 ~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred hcCccCCCceEEEeccEEeeeeccchH
Confidence 76 33 56799999999987654
No 23
>KOG0123|consensus
Probab=99.90 E-value=4.1e-23 Score=190.91 Aligned_cols=157 Identities=36% Similarity=0.667 Sum_probs=144.7
Q ss_pred eEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCCcc
Q psy3016 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQ 115 (305)
Q Consensus 36 ~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~~~ 115 (305)
.|||| +++|+..|+++|+.+|+|.++++.+|. + +.|||||.|.+.++|++||+.+|...+.|+.+++.|+....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 68999 999999999999999999999999997 5 99999999999999999999999999999999999988665
Q ss_pred ccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccC
Q psy3016 116 KNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRD 195 (305)
Q Consensus 116 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d 195 (305)
.. |||.||+++++...|+++|+.||.|.+| +++.|
T Consensus 77 ~~------~~i~nl~~~~~~~~~~d~f~~~g~ilS~---------------------------------------kv~~~ 111 (369)
T KOG0123|consen 77 SL------VFIKNLDESIDNKSLYDTFSEFGNILSC---------------------------------------KVATD 111 (369)
T ss_pred ce------eeecCCCcccCcHHHHHHHHhhcCeeEE---------------------------------------EEEEc
Confidence 43 9999999999999999999999999999 67777
Q ss_pred CCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCcCCC
Q psy3016 196 PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246 (305)
Q Consensus 196 ~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~~~~ 246 (305)
.. | ++|| ||+|++.++|.+|+..+||..+.++.|.|.....+..+...
T Consensus 112 ~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~ 159 (369)
T KOG0123|consen 112 EN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAP 159 (369)
T ss_pred CC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhccc
Confidence 44 5 8999 99999999999999999999999999999988777665433
No 24
>KOG0146|consensus
Probab=99.89 E-value=5.7e-23 Score=174.90 Aligned_cols=171 Identities=25% Similarity=0.415 Sum_probs=150.8
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCce-eCC--eeeEEe
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIK-LYG--KPIRVN 109 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~-~~g--~~l~v~ 109 (305)
..++||||.|.+.-.|+|++.+|..||+|++|.+.+.. .|.+||+|||.|.++-+|..||..|+|.. +.| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 67899999999999999999999999999999999885 78999999999999999999999999853 333 567777
Q ss_pred eCCCccc-------------------------------------------------------------------------
Q psy3016 110 KASSHQK------------------------------------------------------------------------- 116 (305)
Q Consensus 110 ~~~~~~~------------------------------------------------------------------------- 116 (305)
++...++
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 7654110
Q ss_pred --------------------------------------------------------------------------------
Q psy3016 117 -------------------------------------------------------------------------------- 116 (305)
Q Consensus 117 -------------------------------------------------------------------------------- 116 (305)
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence
Q ss_pred ------------------------cccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCcc
Q psy3016 117 ------------------------NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASS 172 (305)
Q Consensus 117 ------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~ 172 (305)
.....|+|||..||.+.++.+|.++|-+||.|.+.
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSa--------------------- 315 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSA--------------------- 315 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeee---------------------
Confidence 00113899999999999999999999999999876
Q ss_pred ccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 173 HQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
+++.|..|+.+|.|+||.|++..+|..||.+|||..|+-++|+|.+.++++.+
T Consensus 316 ------------------KVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 316 ------------------KVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred ------------------eeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 78999999999999999999999999999999999999999999998887654
No 25
>KOG0123|consensus
Probab=99.89 E-value=1.1e-22 Score=188.04 Aligned_cols=214 Identities=28% Similarity=0.485 Sum_probs=179.2
Q ss_pred cccccCcccccCCCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHH
Q psy3016 14 PCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93 (305)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai 93 (305)
+.+.||+++..+- |||.||++++|.++|.++|+.||+|.+|++..+. .| ++|| ||+|.+++.|.+|+
T Consensus 66 ~~rim~s~rd~~~----------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai 132 (369)
T KOG0123|consen 66 PIRIMWSQRDPSL----------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAI 132 (369)
T ss_pred EEEeehhccCCce----------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHH
Confidence 5556666654222 9999999999999999999999999999999997 44 8999 99999999999999
Q ss_pred HHhcCceeCCeeeEEeeCCCccccc-------cccccccccCCCchhcHHHHHHHHhhcCcccchh--------------
Q psy3016 94 KIMNMIKLYGKPIRVNKASSHQKNL-------DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP-------------- 152 (305)
Q Consensus 94 ~~l~g~~~~g~~l~v~~~~~~~~~~-------~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~-------------- 152 (305)
+.+||..+.|++|.|.....+..+. ....+++|.+++..++++.|.+.|..+|.|..+.
T Consensus 133 ~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gf 212 (369)
T KOG0123|consen 133 EKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGF 212 (369)
T ss_pred HHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccc
Confidence 9999999999999998877654322 2356799999999999999999999999998853
Q ss_pred -------------hhhhhhhhcCcceeeecCccccc-----------------cCCCcceeEeccCCCC-----------
Q psy3016 153 -------------KIMNMIKLYGKPIRVNKASSHQK-----------------NLDVGANIFIGNLDPE----------- 191 (305)
Q Consensus 153 -------------~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~l~~~----------- 191 (305)
+-+++..++++.+.|..+++..+ ..-..+++|++|++..
T Consensus 213 v~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~ 292 (369)
T KOG0123|consen 213 VNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFS 292 (369)
T ss_pred eeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHh
Confidence 22677777888888888887422 1335789999998854
Q ss_pred ---------cccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 192 ---------IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 192 ---------i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
++.+ ..|.++||+||.|++.++|.+|+..+|+..+.++.|.|.++....
T Consensus 293 ~~GeI~s~kv~~~-~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~ 350 (369)
T KOG0123|consen 293 SFGEITSAKVMVD-ENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKE 350 (369)
T ss_pred cccceeeEEEEec-cCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhc
Confidence 3444 448999999999999999999999999999999999999986443
No 26
>KOG0148|consensus
Probab=99.88 E-value=1.5e-22 Score=172.74 Aligned_cols=141 Identities=33% Similarity=0.620 Sum_probs=121.4
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEee
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~ 110 (305)
.+..+|||||||...+||+-|..||+..|.|.+|+++.+ .++|.|
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~w 47 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVNW 47 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhcccc
Confidence 467899999999999999999999999999999999876 244444
Q ss_pred CCCcccc----ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEec
Q psy3016 111 ASSHQKN----LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIG 186 (305)
Q Consensus 111 ~~~~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (305)
+...... .....-+||+.|...++.++|++.|.+||+|+.+
T Consensus 48 a~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~a----------------------------------- 92 (321)
T KOG0148|consen 48 ATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDA----------------------------------- 92 (321)
T ss_pred ccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccc-----------------------------------
Confidence 4432211 1123458899999999999999999999999976
Q ss_pred cCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCcCC
Q psy3016 187 NLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGD 245 (305)
Q Consensus 187 ~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~~~ 245 (305)
+|++|..|++++||+||.|-+.++|++||..|||.||++|.|+..|+..+.....
T Consensus 93 ----kvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n 147 (321)
T KOG0148|consen 93 ----KVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMN 147 (321)
T ss_pred ----eEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccC
Confidence 8999999999999999999999999999999999999999999999988765433
No 27
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.86 E-value=1.1e-20 Score=183.02 Aligned_cols=109 Identities=28% Similarity=0.424 Sum_probs=88.8
Q ss_pred CCccceeecCccccccCcccccCCCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEE
Q psy3016 3 LGREIQAGISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIE 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~ 82 (305)
.||.|.+.+.....+.. .......+.....++|||+||+.++++++|+++|+.||.|.+|+|.++..+++++|||||+
T Consensus 175 ~GR~IkV~rp~~~p~a~--~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVe 252 (612)
T TIGR01645 175 GGRNIKVGRPSNMPQAQ--PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIE 252 (612)
T ss_pred ecceeeecccccccccc--cccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEE
Confidence 57777777554332211 1111112233456799999999999999999999999999999999999889999999999
Q ss_pred EcCHHHHHHHHHHhcCceeCCeeeEEeeCCC
Q psy3016 83 FMGEEDADYAIKIMNMIKLYGKPIRVNKASS 113 (305)
Q Consensus 83 f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~ 113 (305)
|.+.++|.+|++.||+..+.|+.|+|.++..
T Consensus 253 Fe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 253 YNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred ECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 9999999999999999999999999988653
No 28
>KOG0110|consensus
Probab=99.86 E-value=1.4e-21 Score=185.75 Aligned_cols=171 Identities=20% Similarity=0.422 Sum_probs=145.8
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCC---CCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVT---QTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~---~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
..++|||.||.+.+|.++|...|...|.|.++.|..-+.. --|.|||||+|.+.++|++|++.|+|..+.|+.|.|+
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3344999999999999999999999999999988654411 1345999999999999999999999999999999999
Q ss_pred eCCC--------ccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcc
Q psy3016 110 KASS--------HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGA 181 (305)
Q Consensus 110 ~~~~--------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (305)
++.. ..........|+|.|||...+..+++.+|..||.+..+
T Consensus 594 ~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksv------------------------------ 643 (725)
T KOG0110|consen 594 ISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSV------------------------------ 643 (725)
T ss_pred eccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeee------------------------------
Confidence 9882 22222335789999999999999999999999999876
Q ss_pred eeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 182 NIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 182 ~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
++......+.++|||||+|-+..+|.+|+.+|.++.+.||.|.+.|+.....
T Consensus 644 ---------RlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 644 ---------RLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred ---------ccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchH
Confidence 3443334467899999999999999999999999999999999999977654
No 29
>KOG0144|consensus
Probab=99.86 E-value=1e-21 Score=177.10 Aligned_cols=170 Identities=26% Similarity=0.430 Sum_probs=149.6
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCc-eeC--CeeeEE
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMI-KLY--GKPIRV 108 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~-~~~--g~~l~v 108 (305)
...++||||.|++.+||.|++++|++||.|++|.|++|. .+.++|||||+|.+.|.|..||+.|||. .+. ...|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 347899999999999999999999999999999999996 7899999999999999999999999984 333 468899
Q ss_pred eeCCCccccc----------------------------------------------------------------------
Q psy3016 109 NKASSHQKNL---------------------------------------------------------------------- 118 (305)
Q Consensus 109 ~~~~~~~~~~---------------------------------------------------------------------- 118 (305)
+|+..++++.
T Consensus 201 kFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~ 280 (510)
T KOG0144|consen 201 KFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAAL 280 (510)
T ss_pred EecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHh
Confidence 9887521100
Q ss_pred --------------------------------------------------------------------------------
Q psy3016 119 -------------------------------------------------------------------------------- 118 (305)
Q Consensus 119 -------------------------------------------------------------------------------- 118 (305)
T Consensus 281 ~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~ 360 (510)
T KOG0144|consen 281 AAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPV 360 (510)
T ss_pred hhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcc
Confidence
Q ss_pred -------------------------------------------------------------cccccccccCCCchhcHHH
Q psy3016 119 -------------------------------------------------------------DVGANIFIGNLDPEVDEKL 137 (305)
Q Consensus 119 -------------------------------------------------------------~~~~~l~v~nl~~~~t~~~ 137 (305)
....++||++||.+..+.+
T Consensus 361 aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~ 440 (510)
T KOG0144|consen 361 AASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQD 440 (510)
T ss_pred cccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHH
Confidence 0015799999999999999
Q ss_pred HHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHH
Q psy3016 138 LYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDA 217 (305)
Q Consensus 138 l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~ 217 (305)
|...|..||.|.+. ++..|..++-++.|+||.|++..+|.+
T Consensus 441 l~~~f~pfG~Vlsa---------------------------------------kvfidk~tnlskcfgfvSyen~~sa~~ 481 (510)
T KOG0144|consen 441 LIATFQPFGGVLSA---------------------------------------KVFIDKVTNLSKCFGFVSYENAQSAQN 481 (510)
T ss_pred HHHHhccccceeEE---------------------------------------EEEEecccCHhhhcCcccccchhhhHH
Confidence 99999999999876 678888999999999999999999999
Q ss_pred HHHHhcCeeecCeeeEEEEeeecC
Q psy3016 218 SIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 218 Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
||.+|||..++.++++|....++.
T Consensus 482 aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 482 AISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred HHHHhcchhhccccceEEeeeccC
Confidence 999999999999999999876654
No 30
>KOG0147|consensus
Probab=99.85 E-value=6e-22 Score=183.66 Aligned_cols=173 Identities=25% Similarity=0.454 Sum_probs=153.9
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....+|||+--|....+..+|.++|+.+|.|..|.++.|..+++++|.|||+|.+.+....||. |.|..+.|..|.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEec
Confidence 44566899999999999999999999999999999999999999999999999999999999996 89999999999998
Q ss_pred eCCCccccc-------------cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCcccccc
Q psy3016 110 KASSHQKNL-------------DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKN 176 (305)
Q Consensus 110 ~~~~~~~~~-------------~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (305)
......... -+-..|||+||..++++++|+.+|++||.|..+
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v------------------------- 308 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENV------------------------- 308 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceee-------------------------
Confidence 765432110 011238999999999999999999999999987
Q ss_pred CCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 177 LDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 177 ~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
..+.|..+|.++||+||+|.+.++|.+|+..|||.++.|+.|+|.....+..
T Consensus 309 --------------~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 309 --------------QLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred --------------eeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 7788988999999999999999999999999999999999999988766543
No 31
>KOG4205|consensus
Probab=99.84 E-value=5e-21 Score=171.54 Aligned_cols=171 Identities=26% Similarity=0.457 Sum_probs=153.4
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
..++||||+|+..++++.|++.|..||+|.+|.+++|..+++++||+||+|.+.+...+++. .....+.|+.|....+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 68899999999999999999999999999999999999999999999999999999998887 35678899999999988
Q ss_pred Cccccccc-----cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEecc
Q psy3016 113 SHQKNLDV-----GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGN 187 (305)
Q Consensus 113 ~~~~~~~~-----~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (305)
+....... ...|||+.|+.+++++++++.|+.||.|..+
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~------------------------------------ 127 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADV------------------------------------ 127 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEee------------------------------------
Confidence 76644332 4589999999999999999999999988754
Q ss_pred CCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCcC
Q psy3016 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244 (305)
Q Consensus 188 l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~~ 244 (305)
.+|.|..+...+||+||.|.+.++..+++. .+-+.|+++.+.|..|.+++...
T Consensus 128 ---~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 128 ---VIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred ---EEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhcc
Confidence 789999999999999999998887777776 78889999999999998887654
No 32
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.82 E-value=1.5e-19 Score=167.88 Aligned_cols=141 Identities=29% Similarity=0.477 Sum_probs=117.2
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCC--eeeEEee
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYG--KPIRVNK 110 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g--~~l~v~~ 110 (305)
..++|||+|||..+++++|+++|+.||.|..++++.+..++.++|||||+|.+.++|.+|++.|||..+.| +.|.+.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35689999999999999999999999999999999988788899999999999999999999999998877 5678877
Q ss_pred CCCcccc-------------------------------------------------------------------------
Q psy3016 111 ASSHQKN------------------------------------------------------------------------- 117 (305)
Q Consensus 111 ~~~~~~~------------------------------------------------------------------------- 117 (305)
+......
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 6432100
Q ss_pred ------------------ccccccccccCCCchhcHHHHHHHHhhcCcccchh---------------------------
Q psy3016 118 ------------------LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP--------------------------- 152 (305)
Q Consensus 118 ------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~--------------------------- 152 (305)
.....+|||+||+..+++++|+++|++||.|.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 00112599999999999999999999999998863
Q ss_pred -hhhhhhhhcCcceeeecCccc
Q psy3016 153 -KIMNMIKLYGKPIRVNKASSH 173 (305)
Q Consensus 153 -~~~~~~~~~~~~~~~~~~~~~ 173 (305)
..||+..++|+.+.|.+...+
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCC
Confidence 226777777777777776653
No 33
>KOG0147|consensus
Probab=99.80 E-value=2.8e-19 Score=165.98 Aligned_cols=203 Identities=25% Similarity=0.354 Sum_probs=133.5
Q ss_pred EEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCCccc
Q psy3016 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQK 116 (305)
Q Consensus 37 l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~~~~ 116 (305)
||||||..++++++|+.+|+.||.|+.|.+..|..+|.++|||||+|.+.++|.+|++.|||.++-|+.|+|........
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999987654433
Q ss_pred cccccccc------cccCCCch-hcHHHHHHHHhhcCcccchh-hh--------hhh-hhhcCcceeeecCccccccCCC
Q psy3016 117 NLDVGANI------FIGNLDPE-VDEKLLYDTFSAFGVILQTP-KI--------MNM-IKLYGKPIRVNKASSHQKNLDV 179 (305)
Q Consensus 117 ~~~~~~~l------~v~nl~~~-~t~~~l~~~f~~~g~v~~~~-~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~ 179 (305)
......+. --+.|+.. ....+++..|.+.-.+..+. .+ +.. .-+++.. .+....+.+. -+
T Consensus 361 ~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~-~~~~~~p~~~--~p 437 (549)
T KOG0147|consen 361 TKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVV-RVRSVDPADA--SP 437 (549)
T ss_pred cccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCc-CccccCcccc--cc
Confidence 22211111 11233332 23466666665533332211 00 000 1111100 0111111100 00
Q ss_pred cceeEeccCCCCcccCCCC------------------------------CCccceEEEEeCChHHHHHHHHHhcCeeecC
Q psy3016 180 GANIFIGNLDPEIMRDPDT------------------------------GNSKGFAFINYASFEASDASIDAMHGQYLCN 229 (305)
Q Consensus 180 ~~~~~~~~l~~~i~~d~~~------------------------------~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g 229 (305)
+-.|-..|+-..-|.|+.+ ..+-|+.||+|.+.+.|..|+++|||.||.|
T Consensus 438 ~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~g 517 (549)
T KOG0147|consen 438 AFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAG 517 (549)
T ss_pred ccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhcc
Confidence 0012222222222333321 2345999999999999999999999999999
Q ss_pred eeeEEEEeeecCC
Q psy3016 230 RPISVSYAFKKDS 242 (305)
Q Consensus 230 ~~l~v~~a~~~~~ 242 (305)
+.|+++|-.....
T Consensus 518 r~Ita~~~~~~~Y 530 (549)
T KOG0147|consen 518 RMITAKYLPLERY 530 (549)
T ss_pred ceeEEEEeehhhh
Confidence 9999999765544
No 34
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=4.2e-18 Score=137.99 Aligned_cols=91 Identities=30% Similarity=0.434 Sum_probs=83.9
Q ss_pred CCCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCe
Q psy3016 25 EGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGK 104 (305)
Q Consensus 25 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~ 104 (305)
+.-+......++|||+|||..+|+++|+++|++||.|.+|+++.+..+++++|||||+|.+.++|++|++.||+..+.|+
T Consensus 25 ~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr 104 (144)
T PLN03134 25 SMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGR 104 (144)
T ss_pred cccccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 34445566788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeeCCCcc
Q psy3016 105 PIRVNKASSHQ 115 (305)
Q Consensus 105 ~l~v~~~~~~~ 115 (305)
.|+|.++..+.
T Consensus 105 ~l~V~~a~~~~ 115 (144)
T PLN03134 105 HIRVNPANDRP 115 (144)
T ss_pred EEEEEeCCcCC
Confidence 99999987654
No 35
>KOG0117|consensus
Probab=99.76 E-value=2.9e-18 Score=155.54 Aligned_cols=146 Identities=23% Similarity=0.358 Sum_probs=125.0
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCC-eEEEEEcccCC-CCCcceEEEEEEcCHHHHHHHHHHhc--CceeCCeeeEE
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGP-VVNVHMPKDRV-TQTHQGYGFIEFMGEEDADYAIKIMN--MIKLYGKPIRV 108 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~i~~~~~~~-~~~~~g~afV~f~~~e~A~~Ai~~l~--g~~~~g~~l~v 108 (305)
.+++|||||||+.+++++|.+-|++.++ |..|.|..+.. ..+++|||||+|.++..|..|.++|- .+.++|+.+.|
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 4679999999999999999999999884 67777776653 46889999999999999999998875 46889999999
Q ss_pred eeCCCcccc----ccccccccccCCCchhcHHHHHHHHhhcCcccchh--------------------hhhhhhhhcCcc
Q psy3016 109 NKASSHQKN----LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP--------------------KIMNMIKLYGKP 164 (305)
Q Consensus 109 ~~~~~~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~--------------------~~~~~~~~~~~~ 164 (305)
.|+.+.... ....+.|||.||+.++|+|.|.++|+.||.|+.++ +.+|+..++|..
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rDYaFVHf~eR~davkAm~~~ngkeldG~~ 322 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRDYAFVHFAEREDAVKAMKETNGKELDGSP 322 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccceeEEeecchHHHHHHHHHhcCceecCce
Confidence 999986533 33457899999999999999999999999999975 338999999999
Q ss_pred eeeecCccccccCC
Q psy3016 165 IRVNKASSHQKNLD 178 (305)
Q Consensus 165 ~~~~~~~~~~~~~~ 178 (305)
+.+.-+++.++.++
T Consensus 323 iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 323 IEVTLAKPVDKKKK 336 (506)
T ss_pred EEEEecCChhhhcc
Confidence 99999998655433
No 36
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.74 E-value=9.5e-18 Score=162.32 Aligned_cols=143 Identities=23% Similarity=0.380 Sum_probs=118.1
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCC-eEEEEEc-ccCCCCCcceEEEEEEcCHHHHHHHHHHhcC--ceeCCeeeEE
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGP-VVNVHMP-KDRVTQTHQGYGFIEFMGEEDADYAIKIMNM--IKLYGKPIRV 108 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~i~~~-~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g--~~~~g~~l~v 108 (305)
..++|||+|||.++|+++|.+.|++++. +.++.++ .....++++|||||+|.++++|..|++.|+. ..++|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4689999999999999999999999864 4444443 3333567899999999999999999998863 5688999999
Q ss_pred eeCCCcccc----ccccccccccCCCchhcHHHHHHHHhhc--Ccccchh--------------------hhhhhhhhcC
Q psy3016 109 NKASSHQKN----LDVGANIFIGNLDPEVDEKLLYDTFSAF--GVILQTP--------------------KIMNMIKLYG 162 (305)
Q Consensus 109 ~~~~~~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~--g~v~~~~--------------------~~~~~~~~~~ 162 (305)
.|+.+.... ....++|||+||+.++|+++|+++|+.| |.|..+. +.||+..++|
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rgfAFVeF~s~e~A~kAi~~lnG~~i~G 296 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRDYAFVHFEDREDAVKAMDELNGKELEG 296 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecCeEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 998865432 2235789999999999999999999999 9998873 2388899999
Q ss_pred cceeeecCccccc
Q psy3016 163 KPIRVNKASSHQK 175 (305)
Q Consensus 163 ~~~~~~~~~~~~~ 175 (305)
+.+.|.++...+.
T Consensus 297 r~I~V~~Akp~~~ 309 (578)
T TIGR01648 297 SEIEVTLAKPVDK 309 (578)
T ss_pred EEEEEEEccCCCc
Confidence 9999999987543
No 37
>KOG0105|consensus
Probab=99.74 E-value=2e-17 Score=134.15 Aligned_cols=148 Identities=21% Similarity=0.324 Sum_probs=125.5
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEee
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~ 110 (305)
...+++|||||||.++.+.||.++|-+||.|..|.|..-. ..-.||||+|++..+|+.||..-+|..+.|..|+|++
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 3567899999999999999999999999999999984432 2458999999999999999999999999999999998
Q ss_pred CCCccc-------------------------cccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcce
Q psy3016 111 ASSHQK-------------------------NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPI 165 (305)
Q Consensus 111 ~~~~~~-------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~ 165 (305)
+..-.. .......+.|.+||.+-++++|++.+.+.|+|-..
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfa-------------- 145 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFA-------------- 145 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeee--------------
Confidence 764311 11124679999999999999999999999999754
Q ss_pred eeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeee
Q psy3016 166 RVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYL 227 (305)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~ 227 (305)
++.+| |++.|+|...++.+-|++.|..+.+
T Consensus 146 -------------------------dv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 146 -------------------------DVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred -------------------------eeecc-------cceeeeeeehhhHHHHHHhhccccc
Confidence 33444 4789999999999999999998876
No 38
>KOG4212|consensus
Probab=99.72 E-value=1.7e-16 Score=143.63 Aligned_cols=175 Identities=23% Similarity=0.362 Sum_probs=146.2
Q ss_pred ccCCCCCcCCCCceEEEcCCCccccHHHHHHHhc-cCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCcee
Q psy3016 23 KLEGGGESGDGDATIYVGGLDDKVSETLMWELFV-QSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKL 101 (305)
Q Consensus 23 ~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~ 101 (305)
..+..+......+.+||.|||+++.+.+|+++|. +-|+|+.|.+..|. .|+++|+|.|+|.++|.+++|++.||...+
T Consensus 33 ~gs~~gn~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~ 111 (608)
T KOG4212|consen 33 AGSQGGNVAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEV 111 (608)
T ss_pred ccCCCCCcccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccc
Confidence 3344455556667799999999999999999997 68899999999996 789999999999999999999999999999
Q ss_pred CCeeeEEeeCCCccc-----------------------------------------------------------------
Q psy3016 102 YGKPIRVNKASSHQK----------------------------------------------------------------- 116 (305)
Q Consensus 102 ~g~~l~v~~~~~~~~----------------------------------------------------------------- 116 (305)
.||.|.|.--...+.
T Consensus 112 ~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~ 191 (608)
T KOG4212|consen 112 NGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNS 191 (608)
T ss_pred cCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccc
Confidence 999999974332000
Q ss_pred -------------------cccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccC
Q psy3016 117 -------------------NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNL 177 (305)
Q Consensus 117 -------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (305)
..+...++||.||...+..+.|++.|.-.|.|..+
T Consensus 192 ~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~v-------------------------- 245 (608)
T KOG4212|consen 192 SNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSV-------------------------- 245 (608)
T ss_pred hhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeee--------------------------
Confidence 00012568999999999999999999999998876
Q ss_pred CCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEee
Q psy3016 178 DVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238 (305)
Q Consensus 178 ~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 238 (305)
.+-.|.. |.++|+|.++|+..-+|..||..+++.-+..++.++.+..
T Consensus 246 -------------df~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 246 -------------DFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRLDR 292 (608)
T ss_pred -------------ceeeccc-cccCCeeEEEecchHHHHHHHHhhccCCCccccceeeccc
Confidence 5666644 7999999999999999999999999877788888887743
No 39
>KOG1457|consensus
Probab=99.68 E-value=6.5e-16 Score=128.91 Aligned_cols=157 Identities=19% Similarity=0.296 Sum_probs=121.0
Q ss_pred CCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcc-cCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeC---C
Q psy3016 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPK-DRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLY---G 103 (305)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~-~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~---g 103 (305)
.+.....+||||.+||.++...||+.+|..|---+.+.+.. ++.....+-+||++|.+.+.|.+|+..|||..|+ +
T Consensus 28 ~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~ 107 (284)
T KOG1457|consen 28 ADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETG 107 (284)
T ss_pred cccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccC
Confidence 33455689999999999999999999999986555555533 2222344579999999999999999999999997 7
Q ss_pred eeeEEeeCCCcccccc----------------------------------------------------------------
Q psy3016 104 KPIRVNKASSHQKNLD---------------------------------------------------------------- 119 (305)
Q Consensus 104 ~~l~v~~~~~~~~~~~---------------------------------------------------------------- 119 (305)
..|+++.++...+.+.
T Consensus 108 stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~ 187 (284)
T KOG1457|consen 108 STLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPD 187 (284)
T ss_pred ceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhh
Confidence 8899988764211000
Q ss_pred ---------------------ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCC
Q psy3016 120 ---------------------VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLD 178 (305)
Q Consensus 120 ---------------------~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (305)
...+|||.||..++||++|+.+|+.|.--...
T Consensus 188 ~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l--------------------------- 240 (284)
T KOG1457|consen 188 SKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHIL--------------------------- 240 (284)
T ss_pred hcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEE---------------------------
Confidence 02579999999999999999999998655432
Q ss_pred CcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeee
Q psy3016 179 VGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYL 227 (305)
Q Consensus 179 ~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~ 227 (305)
... . ...-..||++|++++.|..|+..|.|..+
T Consensus 241 --------------~~~-~-~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 241 --------------KIR-A-RGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred --------------EEe-c-CCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 111 1 22345799999999999999999999765
No 40
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.67 E-value=3.8e-16 Score=110.33 Aligned_cols=70 Identities=34% Similarity=0.638 Sum_probs=67.3
Q ss_pred EEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 37 l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
|||+|||.++|+++|+++|+.||.|..+.+..+ .++..++||||+|.+.++|++|++.|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5788999999999999999999999999999999985
No 41
>KOG1548|consensus
Probab=99.67 E-value=2.3e-15 Score=132.92 Aligned_cols=166 Identities=21% Similarity=0.372 Sum_probs=134.5
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEE--------EEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCcee
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVN--------VHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKL 101 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~ 101 (305)
....+..|||.|||.++|-+++.++|++||-|.. |+|.++. .|..+|-|+|.|--.+++..|++.|++..+
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 4556678999999999999999999999997754 8998886 599999999999999999999999999999
Q ss_pred CCeeeEEeeCCCccc-------------------------------------cccccccccccCCCc----hhc------
Q psy3016 102 YGKPIRVNKASSHQK-------------------------------------NLDVGANIFIGNLDP----EVD------ 134 (305)
Q Consensus 102 ~g~~l~v~~~~~~~~-------------------------------------~~~~~~~l~v~nl~~----~~t------ 134 (305)
.|++|+|+.|.-..+ +....++|.+.|+=. ..+
T Consensus 209 rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~d 288 (382)
T KOG1548|consen 209 RGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLND 288 (382)
T ss_pred cCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHH
Confidence 999999998753110 001135566666521 122
Q ss_pred -HHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChH
Q psy3016 135 -EKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFE 213 (305)
Q Consensus 135 -~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~ 213 (305)
.++|.+-+.+||.|..+ ++.| .++.|.+-|.|.+.+
T Consensus 289 lkedl~eec~K~G~v~~v----------------------------------------vv~d---~hPdGvvtV~f~n~e 325 (382)
T KOG1548|consen 289 LKEDLTEECEKFGQVRKV----------------------------------------VVYD---RHPDGVVTVSFRNNE 325 (382)
T ss_pred HHHHHHHHHHHhCCcceE----------------------------------------EEec---cCCCceeEEEeCChH
Confidence 45567778899999875 3555 567899999999999
Q ss_pred HHHHHHHHhcCeeecCeeeEEEEeee
Q psy3016 214 ASDASIDAMHGQYLCNRPISVSYAFK 239 (305)
Q Consensus 214 ~A~~Al~~l~~~~~~g~~l~v~~a~~ 239 (305)
+|..|++.|+|+||+||.|..+.-..
T Consensus 326 eA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 326 EADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHhcCeeecceEEEEEEeCC
Confidence 99999999999999999999887543
No 42
>KOG4206|consensus
Probab=99.67 E-value=1.2e-15 Score=128.15 Aligned_cols=158 Identities=24% Similarity=0.450 Sum_probs=132.5
Q ss_pred CceEEEcCCCccccHHHHHH----HhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 34 DATIYVGGLDDKVSETLMWE----LFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 34 ~~~l~V~nLp~~~te~~L~~----~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
..||||.||...+..++|++ +|+.||.|..|...+ +.+.+|-|||.|.+.+.|..|+..|+|..+.|+.+++.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 44999999999999999988 999999999998865 35788999999999999999999999999999999999
Q ss_pred eCCCcccc-------------------------------------------------ccccccccccCCCchhcHHHHHH
Q psy3016 110 KASSHQKN-------------------------------------------------LDVGANIFIGNLDPEVDEKLLYD 140 (305)
Q Consensus 110 ~~~~~~~~-------------------------------------------------~~~~~~l~v~nl~~~~t~~~l~~ 140 (305)
|+..+... ......+++.|||..++.+.+..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 98753211 11235689999999999999999
Q ss_pred HHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHH
Q psy3016 141 TFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASID 220 (305)
Q Consensus 141 ~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~ 220 (305)
+|..|..-.+++ +.+ ..++.|||+|.+...|..|..
T Consensus 166 lf~qf~g~keir----------------------------------------~i~----~~~~iAfve~~~d~~a~~a~~ 201 (221)
T KOG4206|consen 166 LFEQFPGFKEIR----------------------------------------LIP----PRSGIAFVEFLSDRQASAAQQ 201 (221)
T ss_pred HHhhCcccceeE----------------------------------------ecc----CCCceeEEecchhhhhHHHhh
Confidence 999887666542 222 237799999999999999999
Q ss_pred HhcCeeec-CeeeEEEEee
Q psy3016 221 AMHGQYLC-NRPISVSYAF 238 (305)
Q Consensus 221 ~l~~~~~~-g~~l~v~~a~ 238 (305)
++.+..+- ...+++.|++
T Consensus 202 ~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 202 ALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hhccceeccCceEEecccC
Confidence 99998884 7888888763
No 43
>KOG0124|consensus
Probab=99.65 E-value=4.8e-16 Score=137.95 Aligned_cols=110 Identities=29% Similarity=0.423 Sum_probs=94.8
Q ss_pred CCCCccceeecCccccccCcccccCCCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEE
Q psy3016 1 MSLGREIQAGISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGF 80 (305)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~af 80 (305)
|-+||-|++.+.+++.+.-. ....-.+....-.+|||..+.++.+|+||+..|+.||+|..|++-++..++..+||+|
T Consensus 179 mlGGRNiKVgrPsNmpQAQp--iID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGf 256 (544)
T KOG0124|consen 179 MLGGRNIKVGRPSNMPQAQP--IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGF 256 (544)
T ss_pred cccCccccccCCCCCcccch--HHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceee
Confidence 45899999999888776432 2222233455677999999999999999999999999999999999998889999999
Q ss_pred EEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 81 IEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 81 V~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
|+|.+...-..|+..+|-+.+.|.-|+|..+.
T Consensus 257 iEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 257 IEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred EEeccccchHHHhhhcchhhcccceEeccccc
Confidence 99999999999999999999999999998653
No 44
>KOG0106|consensus
Probab=99.64 E-value=3.7e-16 Score=132.33 Aligned_cols=148 Identities=25% Similarity=0.435 Sum_probs=128.3
Q ss_pred ceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCCc
Q psy3016 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSH 114 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~~ 114 (305)
..||||+||..+.+.+|..+|..||.+.++.+ ..||+||+|.+..+|..|+..||+..+.|..+.++++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m--------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM--------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee--------ecccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 36999999999999999999999999999988 3489999999999999999999999999988999988742
Q ss_pred ccc-------------------ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccc
Q psy3016 115 QKN-------------------LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQK 175 (305)
Q Consensus 115 ~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (305)
... ....+.+.|.++...+.+.+|.+.|..+|.+.+.
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~------------------------ 129 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYV------------------------ 129 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchh------------------------
Confidence 100 1124678899999999999999999999999543
Q ss_pred cCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEe
Q psy3016 176 NLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237 (305)
Q Consensus 176 ~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a 237 (305)
-..++++||+|++.++|.+|+..|++..+.++.|++...
T Consensus 130 -----------------------~~~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 130 -----------------------DARRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred -----------------------hhhccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 114789999999999999999999999999999999443
No 45
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.64 E-value=7.6e-16 Score=124.77 Aligned_cols=83 Identities=34% Similarity=0.597 Sum_probs=77.5
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+||+..+|+++|+++|++||.|..+ .++.|..++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v---------------------------------------~i~~d~~tg 73 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDA---------------------------------------KVIVDRETG 73 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEE---------------------------------------EEEecCCCC
Confidence 46789999999999999999999999999887 678898899
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
+++|||||+|++.++|.+|++.||+..|+|+.|+|+++..+.
T Consensus 74 ~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~ 115 (144)
T PLN03134 74 RSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 115 (144)
T ss_pred CcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCC
Confidence 999999999999999999999999999999999999987653
No 46
>KOG0122|consensus
Probab=99.62 E-value=1.9e-15 Score=127.80 Aligned_cols=85 Identities=28% Similarity=0.416 Sum_probs=81.2
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
..+...+|-|.||+.+++|++|+++|.+||.|..|.|.+|+.+|.++|||||+|.+.++|.+||+.|||.-+..--|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 45577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCc
Q psy3016 110 KASSH 114 (305)
Q Consensus 110 ~~~~~ 114 (305)
|+.++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99864
No 47
>KOG0125|consensus
Probab=99.60 E-value=2.9e-15 Score=131.42 Aligned_cols=93 Identities=23% Similarity=0.341 Sum_probs=84.5
Q ss_pred ccccCCCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCce
Q psy3016 21 QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIK 100 (305)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~ 100 (305)
+...+...++++..++|+|.|||+...|-||+.+|++||.|.+|.|+.+. .-+||||||+|++.++|++|.++|||..
T Consensus 83 ~~~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~ 160 (376)
T KOG0125|consen 83 QTQPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTV 160 (376)
T ss_pred ccCCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcce
Confidence 44455677788899999999999999999999999999999999999986 3488999999999999999999999999
Q ss_pred eCCeeeEEeeCCCcc
Q psy3016 101 LYGKPIRVNKASSHQ 115 (305)
Q Consensus 101 ~~g~~l~v~~~~~~~ 115 (305)
+.||+|.|+.+...-
T Consensus 161 VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 161 VEGRKIEVNNATARV 175 (376)
T ss_pred eeceEEEEeccchhh
Confidence 999999999988653
No 48
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.59 E-value=8.8e-15 Score=134.80 Aligned_cols=83 Identities=28% Similarity=0.488 Sum_probs=76.9
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCC--eeeEEee
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYG--KPIRVNK 110 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g--~~l~v~~ 110 (305)
..++|||+|||..+|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++||+.||+..+.+ +.|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999999899999999999999999999999999998876 6899988
Q ss_pred CCCcc
Q psy3016 111 ASSHQ 115 (305)
Q Consensus 111 ~~~~~ 115 (305)
+....
T Consensus 272 a~~~~ 276 (346)
T TIGR01659 272 AEEHG 276 (346)
T ss_pred CCccc
Confidence 87643
No 49
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.58 E-value=1.3e-14 Score=102.82 Aligned_cols=70 Identities=30% Similarity=0.601 Sum_probs=64.9
Q ss_pred EEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 37 l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
|||+|||.++++++|+++|+.||.|..+.+..++. +..+++|||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 88999999999999999999999999999999874
No 50
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.57 E-value=2.3e-14 Score=126.64 Aligned_cols=117 Identities=37% Similarity=0.595 Sum_probs=104.5
Q ss_pred CceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC-
Q psy3016 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS- 112 (305)
Q Consensus 34 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~- 112 (305)
.++|||+|||..+|+++|+++|..||.|..+.+..++.++.++|||||+|.+.++|..|++.+++..+.|+.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999998889999999999999999999999999999999999999953
Q ss_pred ---Cccccc-------------------cccccccccCCCchhcHHHHHHHHhhcCcccc
Q psy3016 113 ---SHQKNL-------------------DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150 (305)
Q Consensus 113 ---~~~~~~-------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~ 150 (305)
...... .....+++.+++..++..++...|..+|.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVR 254 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcccccccee
Confidence 221111 12467899999999999999999999998854
No 51
>KOG0121|consensus
Probab=99.57 E-value=5.3e-15 Score=113.25 Aligned_cols=84 Identities=29% Similarity=0.530 Sum_probs=79.2
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
....++|||||||+..++|++|+++|+++|+|..|.+--|+.+...-|||||+|.+.++|..|++.+++..+..+.|++.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 55678999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred eCCC
Q psy3016 110 KASS 113 (305)
Q Consensus 110 ~~~~ 113 (305)
|-..
T Consensus 112 ~D~G 115 (153)
T KOG0121|consen 112 WDAG 115 (153)
T ss_pred cccc
Confidence 8654
No 52
>KOG1190|consensus
Probab=99.57 E-value=3.5e-14 Score=127.87 Aligned_cols=158 Identities=22% Similarity=0.365 Sum_probs=133.0
Q ss_pred CceEEEcCCC-ccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 34 DATIYVGGLD-DKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 34 ~~~l~V~nLp-~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
+..|.|.||- ..+|.+-|..+|.-||.|.+|+|..++ +-.|+|+|.+...|+.|++.|+|..|.|+.|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 6789999995 579999999999999999999998875 2569999999999999999999999999999999886
Q ss_pred Cccc------------------------c----------ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhh
Q psy3016 113 SHQK------------------------N----------LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMI 158 (305)
Q Consensus 113 ~~~~------------------------~----------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~ 158 (305)
...- + ...+.+|+..|+|.++++|+++..|...|.....
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vka------- 444 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKA------- 444 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEe-------
Confidence 4210 0 0124589999999999999999999998877542
Q ss_pred hhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCe-eeEEEEe
Q psy3016 159 KLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNR-PISVSYA 237 (305)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~-~l~v~~a 237 (305)
.+. .++.+.+|++.+++.|+|..|+..+|++.+++. .|+|+|+
T Consensus 445 ---------------------------------fkf---f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 445 ---------------------------------FKF---FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred ---------------------------------eee---cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 111 244577999999999999999999999999655 9999998
Q ss_pred ee
Q psy3016 238 FK 239 (305)
Q Consensus 238 ~~ 239 (305)
+.
T Consensus 489 ks 490 (492)
T KOG1190|consen 489 KS 490 (492)
T ss_pred cc
Confidence 64
No 53
>KOG0149|consensus
Probab=99.56 E-value=4.9e-15 Score=124.83 Aligned_cols=83 Identities=29% Similarity=0.368 Sum_probs=75.7
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.+..-++||||+|+..++.++|++.|++||+|.+..|+.|+.+|++||||||+|.+.+.|++|++. -+-.|+||+..++
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 344567899999999999999999999999999999999999999999999999999999999995 3567899999998
Q ss_pred eCCC
Q psy3016 110 KASS 113 (305)
Q Consensus 110 ~~~~ 113 (305)
.+.-
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 8764
No 54
>KOG0120|consensus
Probab=99.55 E-value=1.7e-14 Score=135.80 Aligned_cols=175 Identities=25% Similarity=0.376 Sum_probs=133.9
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.......+||++||..++++++.++...||++...+++.+..+|-++||||.+|.+......|+..|||+.+.+++|.+.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 44556789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eCCCcccccc-----------------------ccccccccCC--Cch-hcH-------HHHHHHHhhcCcccchhhhhh
Q psy3016 110 KASSHQKNLD-----------------------VGANIFIGNL--DPE-VDE-------KLLYDTFSAFGVILQTPKIMN 156 (305)
Q Consensus 110 ~~~~~~~~~~-----------------------~~~~l~v~nl--~~~-~t~-------~~l~~~f~~~g~v~~~~~~~~ 156 (305)
.+........ ....|...|+ +.+ ..+ |+++.-+.+||.|..|
T Consensus 365 ~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v----- 439 (500)
T KOG0120|consen 365 RAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSV----- 439 (500)
T ss_pred hhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEE-----
Confidence 8765322111 0112222222 111 112 2244445668877765
Q ss_pred hhhhcCcceeeecCccccccCCCcceeEeccCCCCcccC---CCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeE
Q psy3016 157 MIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRD---PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPIS 233 (305)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d---~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~ 233 (305)
.|.++ ..-.-+.|..||+|.+.++|.+|+.+|+|+.|.|++|.
T Consensus 440 ----------------------------------~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVv 485 (500)
T KOG0120|consen 440 ----------------------------------EIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVV 485 (500)
T ss_pred ----------------------------------ecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEE
Confidence 22222 12234567789999999999999999999999999999
Q ss_pred EEEeeecCCc
Q psy3016 234 VSYAFKKDSK 243 (305)
Q Consensus 234 v~~a~~~~~~ 243 (305)
++|..+...+
T Consensus 486 tsYydeDkY~ 495 (500)
T KOG0120|consen 486 ASYYDEDKYH 495 (500)
T ss_pred EEecCHHHhh
Confidence 9998766554
No 55
>KOG0110|consensus
Probab=99.54 E-value=3.9e-14 Score=135.44 Aligned_cols=164 Identities=23% Similarity=0.357 Sum_probs=132.1
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....+.++|+|||..+..++|...|..||.|..+.+... | .-|+|+|.+..+|.+|.+.|....+....+.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---G---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcc---c---ceeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 4556778999999999999999999999999999965422 1 248999999999999999999888887777777
Q ss_pred eCCCccc------------------------------------c-------------ccccccccccCCCchhcHHHHHH
Q psy3016 110 KASSHQK------------------------------------N-------------LDVGANIFIGNLDPEVDEKLLYD 140 (305)
Q Consensus 110 ~~~~~~~------------------------------------~-------------~~~~~~l~v~nl~~~~t~~~l~~ 140 (305)
|+-.... . ....+.|||.||+..+|.+++..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 6532000 0 00113499999999999999999
Q ss_pred HHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcc--cCCC-CCCccceEEEEeCChHHHHH
Q psy3016 141 TFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIM--RDPD-TGNSKGFAFINYASFEASDA 217 (305)
Q Consensus 141 ~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~--~d~~-~~~~~g~afV~f~~~~~A~~ 217 (305)
.|...|.|..+ .|. .|+. .-.+.|||||+|.+.++|.+
T Consensus 535 ~F~k~G~VlS~---------------------------------------~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~ 575 (725)
T KOG0110|consen 535 LFSKQGTVLSI---------------------------------------EISKKKDPANKYLSMGFGFVEFAKPESAQA 575 (725)
T ss_pred HHHhcCeEEEE---------------------------------------EEeccccccccccccceeEEEecCHHHHHH
Confidence 99999999875 222 2221 12356999999999999999
Q ss_pred HHHHhcCeeecCeeeEEEEee
Q psy3016 218 SIDAMHGQYLCNRPISVSYAF 238 (305)
Q Consensus 218 Al~~l~~~~~~g~~l~v~~a~ 238 (305)
|+++|+|+.++|+.|.|.++.
T Consensus 576 a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 576 ALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHHHhcCceecCceEEEEecc
Confidence 999999999999999999987
No 56
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=3.6e-14 Score=123.38 Aligned_cols=78 Identities=18% Similarity=0.265 Sum_probs=71.8
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
..++|||+||++.+|+++|+++|+.||.|.+|.|+.+.. ++|||||+|.+.++|..|+. |+|..|.|+.|.|.++.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 357999999999999999999999999999999988753 56999999999999999996 99999999999999987
Q ss_pred Cc
Q psy3016 113 SH 114 (305)
Q Consensus 113 ~~ 114 (305)
..
T Consensus 79 ~~ 80 (260)
T PLN03120 79 DY 80 (260)
T ss_pred CC
Confidence 54
No 57
>KOG0113|consensus
Probab=99.52 E-value=4.9e-14 Score=122.36 Aligned_cols=88 Identities=31% Similarity=0.473 Sum_probs=82.4
Q ss_pred CCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCee
Q psy3016 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKP 105 (305)
Q Consensus 26 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~ 105 (305)
++....+.-+||||+.|++.++|.+|++.|+.||+|..|.|+.++.+|+++|||||+|.++.+...|.+..+|+.|+|+.
T Consensus 93 dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 93 DPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred CCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 45556688899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeCCC
Q psy3016 106 IRVNKASS 113 (305)
Q Consensus 106 l~v~~~~~ 113 (305)
|.|.+...
T Consensus 173 i~VDvERg 180 (335)
T KOG0113|consen 173 ILVDVERG 180 (335)
T ss_pred EEEEeccc
Confidence 99987554
No 58
>KOG0132|consensus
Probab=99.50 E-value=1.8e-13 Score=131.88 Aligned_cols=103 Identities=20% Similarity=0.301 Sum_probs=83.5
Q ss_pred CceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCC
Q psy3016 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS 113 (305)
Q Consensus 34 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~ 113 (305)
++|||||+|+..++|.||.++|+.||+|.+|+++.. +|||||.+...++|.+|+.+|++..+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 469999999999999999999999999999999664 59999999999999999999999999999999999998
Q ss_pred ccccccc----cccccccCCCchhcHHHHHHHH
Q psy3016 114 HQKNLDV----GANIFIGNLDPEVDEKLLYDTF 142 (305)
Q Consensus 114 ~~~~~~~----~~~l~v~nl~~~~t~~~l~~~f 142 (305)
+..+.+- ...+=|.-||+..-.+++..++
T Consensus 495 ~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~ 527 (894)
T KOG0132|consen 495 KGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWC 527 (894)
T ss_pred CCcchhhhhhhhcccCeeEeehHhcCHHHHHhh
Confidence 7765521 1123345566653333344444
No 59
>PLN03213 repressor of silencing 3; Provisional
Probab=99.50 E-value=8.6e-14 Score=128.02 Aligned_cols=81 Identities=23% Similarity=0.408 Sum_probs=73.4
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCH--HHHHHHHHHhcCceeCCeee
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE--EDADYAIKIMNMIKLYGKPI 106 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~--e~A~~Ai~~l~g~~~~g~~l 106 (305)
+......+||||||++.+|+++|+..|+.||.|..|.|++. +| +|||||+|.+. ..+.+||..|||..|.|+.|
T Consensus 5 es~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~L 80 (759)
T PLN03213 5 SSGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRL 80 (759)
T ss_pred ccCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCcee
Confidence 34455689999999999999999999999999999999954 55 89999999987 67999999999999999999
Q ss_pred EEeeCCC
Q psy3016 107 RVNKASS 113 (305)
Q Consensus 107 ~v~~~~~ 113 (305)
+|+.+.+
T Consensus 81 KVNKAKP 87 (759)
T PLN03213 81 RLEKAKE 87 (759)
T ss_pred EEeeccH
Confidence 9998875
No 60
>KOG4211|consensus
Probab=99.49 E-value=4.8e-13 Score=123.41 Aligned_cols=166 Identities=18% Similarity=0.300 Sum_probs=128.3
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
+...-|-+.+||.++|++||.++|+.+ .|+++.+.+. +|+..|-|||+|.+.|++++|++ .+...+.-|-|.|-.+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 445678899999999999999999998 5788766554 68899999999999999999999 4777777787887655
Q ss_pred CCcccc----------ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcc
Q psy3016 112 SSHQKN----------LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGA 181 (305)
Q Consensus 112 ~~~~~~----------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (305)
.....+ ......|.+..||+.+|+++|.++|...-.|...
T Consensus 84 ~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~g------------------------------ 133 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDG------------------------------ 133 (510)
T ss_pred CCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccc------------------------------
Confidence 433211 1245678899999999999999999875544320
Q ss_pred eeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 182 NIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 182 ~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
-.+.....+++.|-|||+|++.+.|++|+. -|...|.-|-|.|-.+...+
T Consensus 134 ---------i~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss~~e 183 (510)
T KOG4211|consen 134 ---------ILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSSRAE 183 (510)
T ss_pred ---------eeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhHHHH
Confidence 113333457889999999999999999998 46667777777776655443
No 61
>KOG0126|consensus
Probab=99.49 E-value=5.1e-15 Score=119.92 Aligned_cols=83 Identities=29% Similarity=0.544 Sum_probs=78.0
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
.+--|||||||+..||.||--.|++||+|..|++++|+.||+++||||+.|.+-.....|+.+|||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 35589999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred Ccc
Q psy3016 113 SHQ 115 (305)
Q Consensus 113 ~~~ 115 (305)
...
T Consensus 114 ~Yk 116 (219)
T KOG0126|consen 114 NYK 116 (219)
T ss_pred ccc
Confidence 443
No 62
>smart00362 RRM_2 RNA recognition motif.
Probab=99.48 E-value=2.6e-13 Score=95.10 Aligned_cols=72 Identities=44% Similarity=0.768 Sum_probs=67.4
Q ss_pred eEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 36 ~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
+|||+|||..+++++|+++|+.||.|..+.+..+. +.++|+|||+|.+.++|++|++.+++..+.|+.+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 6788999999999999999999999999999998873
No 63
>KOG0107|consensus
Probab=99.48 E-value=9.3e-14 Score=112.09 Aligned_cols=80 Identities=25% Similarity=0.571 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
...++||||||+..+++.||...|..||+|.+|-|-.. ..|||||+|.+..+|+.|+..|+|..|.|..|+|+.+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 45789999999999999999999999999999988554 5699999999999999999999999999999999998
Q ss_pred CCccc
Q psy3016 112 SSHQK 116 (305)
Q Consensus 112 ~~~~~ 116 (305)
.....
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 86543
No 64
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.47 E-value=8.5e-14 Score=98.12 Aligned_cols=70 Identities=37% Similarity=0.753 Sum_probs=64.5
Q ss_pred ccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccc
Q psy3016 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKG 203 (305)
Q Consensus 124 l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g 203 (305)
|||+|||.++|+++|+++|+.||.+..+ .++.+ .++..++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~---------------------------------------~~~~~-~~~~~~~ 40 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESI---------------------------------------KVMRN-SSGKSKG 40 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEE---------------------------------------EEEEE-TTSSEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccc---------------------------------------ccccc-ccccccc
Confidence 7999999999999999999999999876 55665 5688999
Q ss_pred eEEEEeCChHHHHHHHHHhcCeeecCeeeE
Q psy3016 204 FAFINYASFEASDASIDAMHGQYLCNRPIS 233 (305)
Q Consensus 204 ~afV~f~~~~~A~~Al~~l~~~~~~g~~l~ 233 (305)
+|||+|++.++|.+|+..|+|..+.|+.|+
T Consensus 41 ~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 41 YAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred eEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 999999999999999999999999999885
No 65
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.46 E-value=4.2e-13 Score=114.96 Aligned_cols=77 Identities=14% Similarity=0.267 Sum_probs=70.7
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
...+|||+||+..+|+++|+++|+.||.|.+|+|+.+. ..++||||+|.+.++|+.|+. |+|..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 35799999999999999999999999999999999884 456899999999999999996 99999999999998865
Q ss_pred C
Q psy3016 113 S 113 (305)
Q Consensus 113 ~ 113 (305)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 4
No 66
>KOG0111|consensus
Probab=99.45 E-value=7.5e-14 Score=116.36 Aligned_cols=88 Identities=39% Similarity=0.684 Sum_probs=82.5
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
...++||||+|...|||.-|...|-+||.|..|++..|-.+++.+|||||+|...|+|.+||.+||+.++.||.|+|+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccc
Q psy3016 112 SSHQKNLD 119 (305)
Q Consensus 112 ~~~~~~~~ 119 (305)
.+..-+..
T Consensus 88 kP~kikeg 95 (298)
T KOG0111|consen 88 KPEKIKEG 95 (298)
T ss_pred CCccccCC
Confidence 98765444
No 67
>smart00360 RRM RNA recognition motif.
Probab=99.45 E-value=4.6e-13 Score=93.50 Aligned_cols=71 Identities=37% Similarity=0.646 Sum_probs=66.8
Q ss_pred EcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 39 VGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 39 V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
|+|||..+++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|.+|++.+++..+.|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999987778899999999999999999999999999999998873
No 68
>KOG4207|consensus
Probab=99.44 E-value=2e-13 Score=112.93 Aligned_cols=84 Identities=29% Similarity=0.477 Sum_probs=79.5
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
..-++-.+|.|-||.+.++.++|+.+|++||.|-+|.|..|.-++.++|||||-|....+|+.|++.|+|.+++|+.|+|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 35566779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCC
Q psy3016 109 NKAS 112 (305)
Q Consensus 109 ~~~~ 112 (305)
+.+.
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 8765
No 69
>KOG1456|consensus
Probab=99.42 E-value=5.3e-12 Score=112.75 Aligned_cols=164 Identities=17% Similarity=0.229 Sum_probs=127.4
Q ss_pred cCCCCceEEEcCCCc-cccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 30 SGDGDATIYVGGLDD-KVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
.....+.+.|.+|.. .+..+.|.++|..||+|+.|++++.+ .|.|.|++.+..+.++|+..||+..+.|.+|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 444567899999976 57788999999999999999999986 378999999999999999999999999999999
Q ss_pred eeCCCc------------------------------------cccccccccccccCCCchhcHHHHHHHHhhcCcccchh
Q psy3016 109 NKASSH------------------------------------QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152 (305)
Q Consensus 109 ~~~~~~------------------------------------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~ 152 (305)
..++.. .+....++.|+.-|.|..+||+.|.++|...+.- .++
T Consensus 358 ~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~-~~s 436 (494)
T KOG1456|consen 358 CVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVP-PTS 436 (494)
T ss_pred eeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCC-cce
Confidence 876531 1112346889999999999999999999875544 220
Q ss_pred hhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCe--
Q psy3016 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNR-- 230 (305)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~-- 230 (305)
.+ +.+.+ .+....+.++|++.++|..||.++|...+.+.
T Consensus 437 -------------------------------------vk-vFp~k-serSssGllEfe~~s~Aveal~~~NH~pi~~p~g 477 (494)
T KOG1456|consen 437 -------------------------------------VK-VFPLK-SERSSSGLLEFENKSDAVEALMKLNHYPIEGPNG 477 (494)
T ss_pred -------------------------------------EE-eeccc-ccccccceeeeehHHHHHHHHHHhccccccCCCC
Confidence 01 12222 33344689999999999999999999988543
Q ss_pred --eeEEEEee
Q psy3016 231 --PISVSYAF 238 (305)
Q Consensus 231 --~l~v~~a~ 238 (305)
+.++.|+.
T Consensus 478 s~PfilKlcf 487 (494)
T KOG1456|consen 478 SFPFILKLCF 487 (494)
T ss_pred CCCeeeeeee
Confidence 34444443
No 70
>KOG0122|consensus
Probab=99.42 E-value=3.1e-13 Score=114.44 Aligned_cols=82 Identities=29% Similarity=0.437 Sum_probs=77.8
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|.|.||+.++++++|.++|.+||.|..+ .+.+|..||
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rv---------------------------------------ylardK~TG 228 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRV---------------------------------------YLARDKETG 228 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCcccee---------------------------------------EEEEccccC
Confidence 46789999999999999999999999999987 789999999
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
.++|||||.|.+.++|.+||+.|||.-++.-.|.|.|++++
T Consensus 229 ~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 229 LSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred cccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCCC
Confidence 99999999999999999999999999999999999999765
No 71
>KOG0108|consensus
Probab=99.41 E-value=4.5e-13 Score=125.46 Aligned_cols=81 Identities=35% Similarity=0.598 Sum_probs=78.5
Q ss_pred ceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCCc
Q psy3016 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSH 114 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~~ 114 (305)
+.|||||||+++++++|.++|+..|.|.+++++.|+.+|+.+||||++|.+.++|..|++.|||.++.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred c
Q psy3016 115 Q 115 (305)
Q Consensus 115 ~ 115 (305)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 72
>KOG1190|consensus
Probab=99.41 E-value=3e-12 Score=115.58 Aligned_cols=168 Identities=15% Similarity=0.312 Sum_probs=131.0
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceE-EEEEEcCHHHHHHHHHHhcCceeCCe--eeEE
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGY-GFIEFMGEEDADYAIKIMNMIKLYGK--PIRV 108 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~-afV~f~~~e~A~~Ai~~l~g~~~~g~--~l~v 108 (305)
..--+++|+|+-+-+|-|-|..+|++||.|..|.-... +.+| |+|+|.+.+.|..|...|+|..|..- .|+|
T Consensus 148 n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrI 222 (492)
T KOG1190|consen 148 NPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRI 222 (492)
T ss_pred ceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEe
Confidence 34457899999999999999999999999998865332 3355 99999999999999999999877654 4455
Q ss_pred eeCCC----------cccc--------c------------------------------------------c--ccccccc
Q psy3016 109 NKASS----------HQKN--------L------------------------------------------D--VGANIFI 126 (305)
Q Consensus 109 ~~~~~----------~~~~--------~------------------------------------------~--~~~~l~v 126 (305)
.++.- ++++ . . ....|.|
T Consensus 223 d~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllv 302 (492)
T KOG1190|consen 223 DFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLV 302 (492)
T ss_pred ehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEE
Confidence 44321 1000 0 0 0256778
Q ss_pred cCCCc-hhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceE
Q psy3016 127 GNLDP-EVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFA 205 (305)
Q Consensus 127 ~nl~~-~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~a 205 (305)
.||.. .+|.+.|..+|+-||+|.++ +|++.. +..|
T Consensus 303 snln~~~VT~d~LftlFgvYGdVqRV---------------------------------------kil~nk-----kd~A 338 (492)
T KOG1190|consen 303 SNLNEEAVTPDVLFTLFGVYGDVQRV---------------------------------------KILYNK-----KDNA 338 (492)
T ss_pred ecCchhccchhHHHHHHhhhcceEEE---------------------------------------EeeecC-----Ccce
Confidence 88875 49999999999999999987 455442 3579
Q ss_pred EEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCcCCCCC
Q psy3016 206 FINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248 (305)
Q Consensus 206 fV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~~~~~~ 248 (305)
+|+|.+...|.-|++.|+|..+.|+.|+|++++.....-.+.+
T Consensus 339 LIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~eg 381 (492)
T KOG1190|consen 339 LIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREG 381 (492)
T ss_pred eeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCC
Confidence 9999999999999999999999999999999987765544433
No 73
>KOG4212|consensus
Probab=99.40 E-value=5.5e-12 Score=114.71 Aligned_cols=76 Identities=24% Similarity=0.398 Sum_probs=65.1
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
...++||+||...+..+.|++.|.-.|.|+.+.+--|+. |.++|||.|+|..+-.|..||..|++..+.++...++
T Consensus 214 l~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~R 289 (608)
T KOG4212|consen 214 LHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVR 289 (608)
T ss_pred ccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCCCccccceee
Confidence 345899999999999999999999999999999988885 4889999999999999999999998665555544443
No 74
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.39 E-value=3.6e-12 Score=89.76 Aligned_cols=74 Identities=39% Similarity=0.654 Sum_probs=68.4
Q ss_pred eEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEee
Q psy3016 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110 (305)
Q Consensus 36 ~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~ 110 (305)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+ ..+++|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999887644 6689999999999999999999999999999998864
No 75
>KOG0130|consensus
Probab=99.38 E-value=8.5e-13 Score=102.11 Aligned_cols=84 Identities=25% Similarity=0.417 Sum_probs=78.6
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
..-.|||.++...+||++|.+.|..||+|..|.+--|..+|-.+|||+|+|.+.+.|++|+..+||..+.|..|.|.|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred Cccc
Q psy3016 113 SHQK 116 (305)
Q Consensus 113 ~~~~ 116 (305)
.+..
T Consensus 151 v~gp 154 (170)
T KOG0130|consen 151 VKGP 154 (170)
T ss_pred ecCC
Confidence 5443
No 76
>KOG0114|consensus
Probab=99.38 E-value=3.1e-12 Score=94.64 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=77.3
Q ss_pred CCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCee
Q psy3016 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKP 105 (305)
Q Consensus 26 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~ 105 (305)
+..-..+..+.|||.|||+++|.+++.++|.+||.|..|+|-..+. .+|-|||.|.+..+|.+|++.|+|..+.++-
T Consensus 10 ~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ry 86 (124)
T KOG0114|consen 10 NIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRY 86 (124)
T ss_pred CCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCce
Confidence 3444566788999999999999999999999999999999977653 5699999999999999999999999999999
Q ss_pred eEEeeCCCcc
Q psy3016 106 IRVNKASSHQ 115 (305)
Q Consensus 106 l~v~~~~~~~ 115 (305)
+.|-+..+..
T Consensus 87 l~vlyyq~~~ 96 (124)
T KOG0114|consen 87 LVVLYYQPED 96 (124)
T ss_pred EEEEecCHHH
Confidence 9999877643
No 77
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.38 E-value=1.2e-12 Score=92.62 Aligned_cols=70 Identities=30% Similarity=0.652 Sum_probs=62.1
Q ss_pred ccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccc
Q psy3016 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKG 203 (305)
Q Consensus 124 l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g 203 (305)
|||+|||.++++++|.++|+.||.|..+ .+..+.. +..++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v---------------------------------------~~~~~~~-~~~~~ 40 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKV---------------------------------------RLIKNKD-GQSRG 40 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEE---------------------------------------EEEESTT-SSEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceE---------------------------------------EEEeeec-cccCC
Confidence 6899999999999999999999998766 5666655 88999
Q ss_pred eEEEEeCChHHHHHHHHHhcCeeecCeeeE
Q psy3016 204 FAFINYASFEASDASIDAMHGQYLCNRPIS 233 (305)
Q Consensus 204 ~afV~f~~~~~A~~Al~~l~~~~~~g~~l~ 233 (305)
+|||+|.+.++|.+|+..+++.+++|+.|+
T Consensus 41 ~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 41 FAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred EEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 999999999999999999999999999885
No 78
>KOG0107|consensus
Probab=99.36 E-value=6.6e-13 Score=107.22 Aligned_cols=79 Identities=20% Similarity=0.447 Sum_probs=70.8
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..+.|||+||+..+++.+|...|..||.+..+|+. .
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvA--------------------------------------------r 44 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVA--------------------------------------------R 44 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEe--------------------------------------------e
Confidence 46789999999999999999999999999887533 3
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
...|||||+|++..||.+|+..|+|+.|+|..|+|.++.-...
T Consensus 45 nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 45 NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 5689999999999999999999999999999999999865543
No 79
>KOG1456|consensus
Probab=99.33 E-value=2.6e-11 Score=108.46 Aligned_cols=164 Identities=19% Similarity=0.261 Sum_probs=128.2
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHh--cCceeCCeeeE
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM--NMIKLYGKPIR 107 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l--~g~~~~g~~l~ 107 (305)
....+-.|.|.+|-..++|.||-+.++.||+|..+..+..+ .-|.|+|++.+.|..|+.-- +...+.|+.-.
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhh
Confidence 34456689999999999999999999999999999887654 67999999999999998632 34677788888
Q ss_pred EeeCCCcccc------ccccccccc--cCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCC
Q psy3016 108 VNKASSHQKN------LDVGANIFI--GNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDV 179 (305)
Q Consensus 108 v~~~~~~~~~------~~~~~~l~v--~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (305)
++++..+.-. ......|.+ -|--+.+|.+.|+.++.+.|.|.++
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRI---------------------------- 152 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRI---------------------------- 152 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEE----------------------------
Confidence 8888543211 112233443 4444579999999999999999976
Q ss_pred cceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeee--cCeeeEEEEeeecCCc
Q psy3016 180 GANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYL--CNRPISVSYAFKKDSK 243 (305)
Q Consensus 180 ~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~--~g~~l~v~~a~~~~~~ 243 (305)
.|++. .--.|.|+|++.+.|.+|..+|||..| +.++|+|.||++..-+
T Consensus 153 -----------vIfkk-----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rln 202 (494)
T KOG1456|consen 153 -----------VIFKK-----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLN 202 (494)
T ss_pred -----------EEEec-----cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceee
Confidence 22222 234799999999999999999999987 5689999999876544
No 80
>KOG0111|consensus
Probab=99.33 E-value=1.1e-12 Score=109.42 Aligned_cols=84 Identities=32% Similarity=0.515 Sum_probs=78.9
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
.++|||++|...+|+..|...|-+||+|.-+ ++..|.++++
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dI---------------------------------------qiPlDyesqk 50 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDI---------------------------------------QIPLDYESQK 50 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhc---------------------------------------ccccchhccc
Confidence 5789999999999999999999999999855 8899999999
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
.|||+||+|+..|||..||..||+.++.||+|+|.|+++...+
T Consensus 51 HRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kik 93 (298)
T KOG0111|consen 51 HRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIK 93 (298)
T ss_pred ccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCcccc
Confidence 9999999999999999999999999999999999999886654
No 81
>KOG0149|consensus
Probab=99.33 E-value=3.9e-12 Score=107.45 Aligned_cols=79 Identities=27% Similarity=0.447 Sum_probs=71.6
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
..+|||++|++.+..+.|++.|+.||+|++. .|+.|..+|+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~ea---------------------------------------vvitd~~t~r 52 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEA---------------------------------------VVITDKNTGR 52 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEE---------------------------------------EEEeccCCcc
Confidence 4689999999999999999999999999876 7889999999
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeee
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 239 (305)
+|||+||.|.+.++|.+|.+- -+-.|+||+.-|++|..
T Consensus 53 skGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 53 SKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred ccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 999999999999999999983 34578999999999865
No 82
>KOG4207|consensus
Probab=99.33 E-value=1.5e-12 Score=107.73 Aligned_cols=83 Identities=27% Similarity=0.380 Sum_probs=76.3
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
.+.-..|.|.||...++.++|+.+|++||.|-.| .|.+|..
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDV---------------------------------------yIPrdr~ 50 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDV---------------------------------------YIPRDRY 50 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccce---------------------------------------ecccccc
Confidence 3345679999999999999999999999999744 8899999
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeee
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 239 (305)
|+.++|||||.|....+|++|+.+|+|..++|+-|+|++|+-
T Consensus 51 Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 51 TRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred cccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 999999999999999999999999999999999999999863
No 83
>KOG0121|consensus
Probab=99.32 E-value=2.4e-12 Score=98.81 Aligned_cols=80 Identities=25% Similarity=0.450 Sum_probs=70.9
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
.+++|||+||+..++||+|+++|++.|+|..+ -+=.|..+.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irri---------------------------------------iMGLdr~kk 75 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRI---------------------------------------IMGLDRFKK 75 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchhee---------------------------------------EeccccCCc
Confidence 46899999999999999999999999999875 123455556
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEee
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 238 (305)
..-|||||+|-+.++|..|++-++|+.++.+.|++.|-.
T Consensus 76 tpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 76 TPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred CccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 788999999999999999999999999999999999853
No 84
>KOG1365|consensus
Probab=99.32 E-value=3.8e-12 Score=114.00 Aligned_cols=175 Identities=18% Similarity=0.207 Sum_probs=128.4
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccC----CCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCee
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQS----GPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKP 105 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~ 105 (305)
++...-.|-+.+||+++|+.|+.++|..- |-.+.|.++... +|+..|-|||.|..+++|+.|+.+ |...+.-|-
T Consensus 157 sk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRY 234 (508)
T KOG1365|consen 157 SKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRY 234 (508)
T ss_pred CcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHH
Confidence 44556688899999999999999999632 244566666653 688899999999999999999975 433333332
Q ss_pred eEEeeCCC----------------------------c--cccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhh
Q psy3016 106 IRVNKASS----------------------------H--QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155 (305)
Q Consensus 106 l~v~~~~~----------------------------~--~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~ 155 (305)
|.+-++.. . -.......||.+.+||+..+.|+|.++|+.|..-...
T Consensus 235 IElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f---- 310 (508)
T KOG1365|consen 235 IELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRF---- 310 (508)
T ss_pred HHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhccc----
Confidence 22221110 0 0011235789999999999999999999998754432
Q ss_pred hhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEE
Q psy3016 156 NMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235 (305)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 235 (305)
..+.+..+. .|+..|-|||+|.+.++|..|....|++....|-|.|-
T Consensus 311 --------------------------------~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 311 --------------------------------QGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred --------------------------------ceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 111334443 38899999999999999999999999999999999998
Q ss_pred EeeecCCc
Q psy3016 236 YAFKKDSK 243 (305)
Q Consensus 236 ~a~~~~~~ 243 (305)
-+...+..
T Consensus 358 p~S~eeln 365 (508)
T KOG1365|consen 358 PCSVEELN 365 (508)
T ss_pred eccHHHHH
Confidence 77666554
No 85
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.30 E-value=1.5e-11 Score=83.16 Aligned_cols=56 Identities=34% Similarity=0.663 Sum_probs=51.0
Q ss_pred HHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 51 MWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 51 L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
|+++|++||+|.++.+..+. +++|||+|.+.++|.+|++.|||..+.|+.|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997653 589999999999999999999999999999999885
No 86
>smart00361 RRM_1 RNA recognition motif.
Probab=99.29 E-value=1.5e-11 Score=87.17 Aligned_cols=62 Identities=24% Similarity=0.281 Sum_probs=55.4
Q ss_pred HHHHHHHhc----cCCCeEEEE-EcccCCC--CCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 48 ETLMWELFV----QSGPVVNVH-MPKDRVT--QTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 48 e~~L~~~F~----~~G~i~~i~-~~~~~~~--~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
+++|+++|+ .||.|.+|. ++.++.+ +.++|||||+|.+.++|.+|++.|||..+.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999995 6666655 8899999999999999999999999999999999863
No 87
>KOG0125|consensus
Probab=99.28 E-value=4.4e-12 Score=111.61 Aligned_cols=100 Identities=24% Similarity=0.415 Sum_probs=80.8
Q ss_pred ceeCCeeeEEeeCCCccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCC
Q psy3016 99 IKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLD 178 (305)
Q Consensus 99 ~~~~g~~l~v~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (305)
-...|..+....+... ...+..++|||.|||...-+.||+.+|++||.|..|
T Consensus 75 ~~t~g~~~~~~~st~s-~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldV--------------------------- 126 (376)
T KOG0125|consen 75 APTDGQPIQTQPSTNS-SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDV--------------------------- 126 (376)
T ss_pred CCCCCCccccCCCCcC-CCCCCCceeEeecCCccccCccHHHHHHhhCceeeE---------------------------
Confidence 3444555555443332 233446789999999999999999999999999765
Q ss_pred CcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 179 VGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 179 ~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
.|+.. + ..+|||+||.|++.+||++|-.+|||+.+.||+|.|+.+..+
T Consensus 127 ------------EIIfN-E-RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 127 ------------EIIFN-E-RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred ------------EEEec-c-CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 55655 2 558999999999999999999999999999999999998765
No 88
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.28 E-value=7.2e-12 Score=109.07 Aligned_cols=75 Identities=13% Similarity=0.272 Sum_probs=67.5
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
.++|||+||++.+|+++|+++|+.||.|..+ .+..|. .
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V---------------------------------------~I~~d~---~ 41 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYV---------------------------------------EMQSEN---E 41 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEeecC---C
Confidence 4689999999999999999999999999987 555663 3
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEee
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 238 (305)
.+|||||+|++.++|..|+. |||..+.|+.|+|.++.
T Consensus 42 ~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 42 RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 57999999999999999996 99999999999999974
No 89
>KOG0130|consensus
Probab=99.26 E-value=9.2e-12 Score=96.41 Aligned_cols=84 Identities=31% Similarity=0.549 Sum_probs=77.0
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
....|||+++....|+++|.+.|..||+|..+ .+-.|..+|
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNi---------------------------------------hLNLDRRtG 111 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNI---------------------------------------HLNLDRRTG 111 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccce---------------------------------------eeccccccc
Confidence 35679999999999999999999999999866 556777889
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
-.+|||+|+|++.++|..|+.++||..+-|..|.|.||..+..
T Consensus 112 y~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 112 YVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKGP 154 (170)
T ss_pred cccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecCC
Confidence 9999999999999999999999999999999999999987754
No 90
>KOG0120|consensus
Probab=99.24 E-value=2.5e-11 Score=114.59 Aligned_cols=167 Identities=27% Similarity=0.471 Sum_probs=138.9
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccC-----------C-CeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhc
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQS-----------G-PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMN 97 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~-----------G-~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~ 97 (305)
.....+.++|++++..++++.+-.+|..- | .+..+.+- ..++|||++|.+.+.|..|+. ++
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n------~~~nfa~ie~~s~~~at~~~~-~~ 243 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN------LEKNFAFIEFRSISEATEAMA-LD 243 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec------ccccceeEEecCCCchhhhhc-cc
Confidence 34456799999999999999999998763 2 36666663 345899999999999999988 78
Q ss_pred CceeCCeeeEEeeCCCccc----------------------cccccccccccCCCchhcHHHHHHHHhhcCcccchhhhh
Q psy3016 98 MIKLYGKPIRVNKASSHQK----------------------NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155 (305)
Q Consensus 98 g~~~~g~~l~v~~~~~~~~----------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~ 155 (305)
+..+.|..+++........ .....+.|||++|+..++++++.++++.||.+...
T Consensus 244 ~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f---- 319 (500)
T KOG0120|consen 244 GIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAF---- 319 (500)
T ss_pred chhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhh----
Confidence 8888898888875443211 11234679999999999999999999999999765
Q ss_pred hhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEE
Q psy3016 156 NMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235 (305)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 235 (305)
.+..|..+|.++||||.+|.+...+..|+..|||..+.++.|+|.
T Consensus 320 -----------------------------------~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 320 -----------------------------------RLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred -----------------------------------eeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 567777889999999999999999999999999999999999999
Q ss_pred EeeecCC
Q psy3016 236 YAFKKDS 242 (305)
Q Consensus 236 ~a~~~~~ 242 (305)
.+.....
T Consensus 365 ~A~~g~~ 371 (500)
T KOG0120|consen 365 RAIVGAS 371 (500)
T ss_pred hhhccch
Confidence 9876544
No 91
>smart00362 RRM_2 RNA recognition motif.
Probab=99.24 E-value=2.5e-11 Score=84.88 Aligned_cols=72 Identities=43% Similarity=0.772 Sum_probs=64.1
Q ss_pred cccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCcc
Q psy3016 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSK 202 (305)
Q Consensus 123 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~ 202 (305)
+|||+||+..+++++|.++|..||.+..+ .+..+. +.++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~---------------------------------------~~~~~~--~~~~ 39 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESV---------------------------------------KIPKDT--GKSK 39 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEE---------------------------------------EEecCC--CCCC
Confidence 58999999999999999999999999865 445443 6788
Q ss_pred ceEEEEeCChHHHHHHHHHhcCeeecCeeeEEE
Q psy3016 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVS 235 (305)
Q Consensus 203 g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 235 (305)
|+|||+|.+.++|.+|+..+++..+.|+.|+|+
T Consensus 40 ~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 40 GFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred ceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 999999999999999999999999999998873
No 92
>KOG0126|consensus
Probab=99.24 E-value=4.7e-13 Score=108.61 Aligned_cols=80 Identities=34% Similarity=0.559 Sum_probs=75.1
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
+.-|||+|||..+|+.+|.-+|+.||+|..+ .+++|..||+
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdi---------------------------------------nLiRDk~TGK 75 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDI---------------------------------------NLIRDKKTGK 75 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEE---------------------------------------EEEecCCCCc
Confidence 5679999999999999999999999999865 7899999999
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeee
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 239 (305)
++||||+.|++..+..-|+..|||..|.||.|+|.....
T Consensus 76 SKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 76 SKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 999999999999999999999999999999999998644
No 93
>KOG0108|consensus
Probab=99.23 E-value=1e-11 Score=116.44 Aligned_cols=82 Identities=29% Similarity=0.577 Sum_probs=77.6
Q ss_pred ccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCc
Q psy3016 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201 (305)
Q Consensus 122 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~ 201 (305)
+.+||||+++++++++|.++|+..|.|... +++.|+.+|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~---------------------------------------~~v~D~~tG~~ 59 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSF---------------------------------------RLVYDRETGKP 59 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCcccee---------------------------------------eecccccCCCc
Confidence 789999999999999999999999999876 88999999999
Q ss_pred cceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 202 ~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
+||||++|.+.++|..|++.|||.++.|++|+|.|+.....
T Consensus 60 ~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 60 KGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred CceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccch
Confidence 99999999999999999999999999999999999866554
No 94
>PLN03213 repressor of silencing 3; Provisional
Probab=99.23 E-value=1.4e-11 Score=113.56 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=70.3
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..-+||||||.+.+++++|...|..||.|..+ .|+ ..+|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdV---------------------------------------EIp--RETG 47 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAV---------------------------------------EFV--RTKG 47 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEE---------------------------------------EEe--cccC
Confidence 34689999999999999999999999999987 556 3456
Q ss_pred CccceEEEEeCCh--HHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 200 NSKGFAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 200 ~~~g~afV~f~~~--~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
||||||+|.+. .++.+||..|||..|.|+.|+|.-|++.-
T Consensus 48 --RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~Y 89 (759)
T PLN03213 48 --RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEHY 89 (759)
T ss_pred --CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHHH
Confidence 99999999987 78999999999999999999999997654
No 95
>KOG0113|consensus
Probab=99.22 E-value=2.9e-11 Score=105.26 Aligned_cols=89 Identities=28% Similarity=0.389 Sum_probs=81.5
Q ss_pred ccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccC
Q psy3016 116 KNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRD 195 (305)
Q Consensus 116 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d 195 (305)
...++-++|||+.|+.+++|..|...|+.||.|..+ .++.|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~Ikri---------------------------------------rlV~d 136 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRI---------------------------------------RLVRD 136 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeE---------------------------------------EEeee
Confidence 344567999999999999999999999999999987 78999
Q ss_pred CCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 196 PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 196 ~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
..+|+++|||||+|++..+...|.+..+|..|+|+.|.|.+-.....+
T Consensus 137 ~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgRTvk 184 (335)
T KOG0113|consen 137 KVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGRTVK 184 (335)
T ss_pred cccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccccccc
Confidence 999999999999999999999999999999999999999997666554
No 96
>KOG0131|consensus
Probab=99.21 E-value=2.7e-11 Score=98.55 Aligned_cols=86 Identities=31% Similarity=0.488 Sum_probs=78.1
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEE-EEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVN-VHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
...+|||+||.+.++|..|+++|+.||.+.. -+++++..+|.++|||||.|.+.+.+.+|++.+||+.+..+.++|.++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 3479999999999999999999999998766 488899888999999999999999999999999999999999999998
Q ss_pred CCccccc
Q psy3016 112 SSHQKNL 118 (305)
Q Consensus 112 ~~~~~~~ 118 (305)
..+..+.
T Consensus 175 ~k~~~kg 181 (203)
T KOG0131|consen 175 FKKDTKG 181 (203)
T ss_pred EecCCCc
Confidence 8665443
No 97
>smart00360 RRM RNA recognition motif.
Probab=99.21 E-value=4.2e-11 Score=83.39 Aligned_cols=71 Identities=44% Similarity=0.785 Sum_probs=63.6
Q ss_pred ccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceE
Q psy3016 126 IGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFA 205 (305)
Q Consensus 126 v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~a 205 (305)
|+||+..+++++|+++|+.||.|..+ .+..+..++.++|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~---------------------------------------~i~~~~~~~~~~~~a 41 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESV---------------------------------------RLVRDKDTGKSKGFA 41 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEE---------------------------------------EEEeCCCCCCCCceE
Confidence 57999999999999999999999876 456665578899999
Q ss_pred EEEeCChHHHHHHHHHhcCeeecCeeeEEE
Q psy3016 206 FINYASFEASDASIDAMHGQYLCNRPISVS 235 (305)
Q Consensus 206 fV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 235 (305)
||+|.+.++|.+|+..+++..+.|+.|+|+
T Consensus 42 ~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 42 FVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred EEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 999999999999999999999999998873
No 98
>KOG4454|consensus
Probab=99.18 E-value=8.9e-12 Score=104.05 Aligned_cols=149 Identities=30% Similarity=0.477 Sum_probs=120.7
Q ss_pred CCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
....+..+||||+|+...|+|+-|.++|-.-|+|..+.|..++ .+..+ ||||.|.++-.+..|++.+||..+.++.+.
T Consensus 3 aaaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q 80 (267)
T KOG4454|consen 3 AAAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQ 80 (267)
T ss_pred CCCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhh
Confidence 3456778999999999999999999999999999999998886 44555 999999999999999999999999998887
Q ss_pred EeeCCCccccccccccccccC----CCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCccee
Q psy3016 108 VNKASSHQKNLDVGANIFIGN----LDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183 (305)
Q Consensus 108 v~~~~~~~~~~~~~~~l~v~n----l~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (305)
+.. +.|+ |+..++++.++..|...|.++.+
T Consensus 81 ~~~--------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~-------------------------------- 114 (267)
T KOG4454|consen 81 RTL--------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGV-------------------------------- 114 (267)
T ss_pred ccc--------------ccCCCcchhhhhcchhhheeeecccCCCCCc--------------------------------
Confidence 753 3344 77789999999999988888754
Q ss_pred EeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeee
Q psy3016 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPI 232 (305)
Q Consensus 184 ~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l 232 (305)
.+-.+.+ |..+.+.|+.+....+.-.++....+....-+++
T Consensus 115 -------R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~ 155 (267)
T KOG4454|consen 115 -------RIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKV 155 (267)
T ss_pred -------ccccccc-CCccCccchhhhhhhcCcHHhhhhcccCcCCCCc
Confidence 4444433 7788899999887777777777666655444433
No 99
>KOG0114|consensus
Probab=99.16 E-value=7.3e-11 Score=87.38 Aligned_cols=79 Identities=28% Similarity=0.448 Sum_probs=69.2
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..+-|||.|||..+|.|+++++|.+||.|..++ | ..+.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIR---------------------------------------i---G~~k 54 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIR---------------------------------------I---GNTK 54 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEE---------------------------------------e---cCcc
Confidence 457799999999999999999999999998751 1 1345
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
..+|-|||.|+++.+|++|+..|+|..++++.|.|-+-...
T Consensus 55 ~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 55 ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 67999999999999999999999999999999999886543
No 100
>KOG0129|consensus
Probab=99.13 E-value=9.1e-10 Score=102.61 Aligned_cols=152 Identities=23% Similarity=0.321 Sum_probs=112.9
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccC---CCCCcce---EEEEEEcCHHHHHHHHHHhcC---c-
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDR---VTQTHQG---YGFIEFMGEEDADYAIKIMNM---I- 99 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~---~~~~~~g---~afV~f~~~e~A~~Ai~~l~g---~- 99 (305)
...-++.||||+||.+++|+.|...|..||.+. +...... ..-..+| |+|+-|+++..+..-+..... .
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~ 333 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNY 333 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccce
Confidence 445678999999999999999999999999854 4544211 1123456 999999999998866554321 1
Q ss_pred ee-------CCeeeEEeeC--------CCccccccccccccccCCCchhcHHHHHHHHh-hcCcccchhhhhhhhhhcCc
Q psy3016 100 KL-------YGKPIRVNKA--------SSHQKNLDVGANIFIGNLDPEVDEKLLYDTFS-AFGVILQTPKIMNMIKLYGK 163 (305)
Q Consensus 100 ~~-------~g~~l~v~~~--------~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~g~v~~~~~~~~~~~~~~~ 163 (305)
.| ..+.+.|..- .......+..++||||+||.-++.++|..+|+ -||.|..+
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~ya------------ 401 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYV------------ 401 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEE------------
Confidence 11 1222333211 11223445679999999999999999999999 69999887
Q ss_pred ceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHH
Q psy3016 164 PIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDA 221 (305)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~ 221 (305)
.|-.|++.+-.+|-|=|.|++..+=.+||.+
T Consensus 402 ---------------------------GIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 402 ---------------------------GIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ---------------------------EeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 6778888888999999999999999999974
No 101
>KOG4661|consensus
Probab=99.12 E-value=1.7e-10 Score=108.10 Aligned_cols=83 Identities=24% Similarity=0.384 Sum_probs=76.2
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEee
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~ 110 (305)
..-.++|||.+|...+...+|++||++||.|...+|+.+..+.-.+.|+||+|.+.++|.+||+.|+..+++|+.|.|+.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34567999999999999999999999999999999999887666778999999999999999999999999999999998
Q ss_pred CCC
Q psy3016 111 ASS 113 (305)
Q Consensus 111 ~~~ 113 (305)
++.
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 764
No 102
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.12 E-value=2.2e-10 Score=80.49 Aligned_cols=74 Identities=39% Similarity=0.769 Sum_probs=65.2
Q ss_pred cccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCcc
Q psy3016 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSK 202 (305)
Q Consensus 123 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~ 202 (305)
+|+|++||..+++++|.++|..+|.|..+ .+..+.. +..+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~---------------------------------------~~~~~~~-~~~~ 40 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESV---------------------------------------RIVRDKD-TKSK 40 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEE---------------------------------------EEeeCCC-CCcc
Confidence 48899999999999999999999998765 4455543 3678
Q ss_pred ceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEE
Q psy3016 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSY 236 (305)
Q Consensus 203 g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~ 236 (305)
++|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 41 ~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 41 GFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred eEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 9999999999999999999999999999999874
No 103
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.12 E-value=1.2e-10 Score=102.83 Aligned_cols=80 Identities=35% Similarity=0.663 Sum_probs=74.5
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
..+|||+||+..+|+++|.++|..||.+..+ .+..|..++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~---------------------------------------~~~~d~~~~~ 155 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRV---------------------------------------RLVRDRETGK 155 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEE---------------------------------------EeeeccccCc
Confidence 5899999999999999999999999999766 6677777899
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeee
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 239 (305)
++|||||+|.+.++|..|+..+++..|.|+.|.|.++..
T Consensus 156 ~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 156 SRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred cCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 999999999999999999999999999999999999653
No 104
>KOG0109|consensus
Probab=99.11 E-value=9.2e-11 Score=101.87 Aligned_cols=77 Identities=25% Similarity=0.438 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
.-+.+|+||||.+.++.+||+..|++||+|.+|+|++ +|+||+|+..++|..|++.|++.++.|+.++|..+
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 3466899999999999999999999999999999965 68999999999999999999999999999999988
Q ss_pred CCccc
Q psy3016 112 SSHQK 116 (305)
Q Consensus 112 ~~~~~ 116 (305)
..+-+
T Consensus 148 tsrlr 152 (346)
T KOG0109|consen 148 TSRLR 152 (346)
T ss_pred ccccc
Confidence 76544
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=99.10 E-value=1.9e-10 Score=81.55 Aligned_cols=63 Identities=21% Similarity=0.377 Sum_probs=53.3
Q ss_pred HHHHHHHHh----hcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC--CCccceEEEE
Q psy3016 135 EKLLYDTFS----AFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT--GNSKGFAFIN 208 (305)
Q Consensus 135 ~~~l~~~f~----~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~--~~~~g~afV~ 208 (305)
+++|++.|. .||.|..+. ++..+..+ +.++|||||+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~--------------------------------------~v~~~~~~~~~~~rG~~fV~ 43 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKIN--------------------------------------KIYIDNVGYENHKRGNVYIT 43 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEE--------------------------------------EEEeCCCCCCCCCcEEEEEE
Confidence 567888888 999998752 13555555 8899999999
Q ss_pred eCChHHHHHHHHHhcCeeecCeeeEEE
Q psy3016 209 YASFEASDASIDAMHGQYLCNRPISVS 235 (305)
Q Consensus 209 f~~~~~A~~Al~~l~~~~~~g~~l~v~ 235 (305)
|.+.++|.+|+..|||.++.|+.|+++
T Consensus 44 f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 44 FERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 999999999999999999999999873
No 106
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.10 E-value=2.9e-10 Score=76.83 Aligned_cols=36 Identities=42% Similarity=0.870 Sum_probs=34.8
Q ss_pred cceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEe
Q psy3016 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237 (305)
Q Consensus 202 ~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a 237 (305)
+++|||+|.+.++|.+|++.|||..++|++|+|.|+
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 689999999999999999999999999999999986
No 107
>KOG0146|consensus
Probab=99.09 E-value=1.3e-10 Score=99.84 Aligned_cols=87 Identities=21% Similarity=0.381 Sum_probs=80.3
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
...+.|+|||-.||....+.||...|-.||.|.+.++..|+.++.+|.|+||.|++...|+.||..|||..|.-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999989888
Q ss_pred eCCCccc
Q psy3016 110 KASSHQK 116 (305)
Q Consensus 110 ~~~~~~~ 116 (305)
.-.+++.
T Consensus 361 LKRPkda 367 (371)
T KOG0146|consen 361 LKRPKDA 367 (371)
T ss_pred hcCcccc
Confidence 7665543
No 108
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.07 E-value=2.5e-10 Score=98.03 Aligned_cols=75 Identities=25% Similarity=0.411 Sum_probs=67.2
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
..+|||+||++.+|+++|+++|+.||.|..+ .+.+| ++
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V---------------------------------------~I~~D---~e 42 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHV---------------------------------------EIIRS---GE 42 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEecC---CC
Confidence 4689999999999999999999999999987 56666 45
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEee
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 238 (305)
.+++|||+|++.++|..|+. |+|..|.+++|.|....
T Consensus 43 t~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 43 YACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred cceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 56899999999999999995 99999999999998754
No 109
>KOG0415|consensus
Probab=99.07 E-value=2e-10 Score=102.19 Aligned_cols=84 Identities=23% Similarity=0.332 Sum_probs=78.8
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEee
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~ 110 (305)
......|||..|.+-+|+++|.-+|+.||.|.+|.|++|..+|.+..||||+|.+.+++++|.-+|++..|.++.|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCc
Q psy3016 111 ASSH 114 (305)
Q Consensus 111 ~~~~ 114 (305)
+.+-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 7653
No 110
>KOG0226|consensus
Probab=99.06 E-value=1.2e-10 Score=99.42 Aligned_cols=165 Identities=22% Similarity=0.348 Sum_probs=131.0
Q ss_pred CCceEEEcCCCccccHHH-H--HHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 33 GDATIYVGGLDDKVSETL-M--WELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~-L--~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....+++++-..+..+- | ...|+.|-.+...+++++. -+...+++|+.|.....-.++-..-++..+..+.+++.
T Consensus 95 ~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 95 AVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLA 173 (290)
T ss_pred ccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeec
Confidence 344677777766665554 3 6778888888888888875 46678999999998888888877767777777777665
Q ss_pred eCCCccc-----cccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeE
Q psy3016 110 KASSHQK-----NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIF 184 (305)
Q Consensus 110 ~~~~~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (305)
......+ -.+...+||++.|..+++++.|...|.+|-.-...
T Consensus 174 ~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~a--------------------------------- 220 (290)
T KOG0226|consen 174 AGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKA--------------------------------- 220 (290)
T ss_pred cccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhc---------------------------------
Confidence 4443221 12246789999999999999999999998755432
Q ss_pred eccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEe
Q psy3016 185 IGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237 (305)
Q Consensus 185 ~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a 237 (305)
++++|.-+|+++||+||.|.+.+++..|++.|+|.+++.+.|++.-+
T Consensus 221 ------kviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 221 ------KVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ------cccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 67899999999999999999999999999999999999999987654
No 111
>KOG0132|consensus
Probab=99.03 E-value=1.5e-09 Score=105.22 Aligned_cols=78 Identities=21% Similarity=0.399 Sum_probs=70.3
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
+++|||+.|+..+++.+|.++|++||+|.++ ....
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi---------------------------------------------~li~ 455 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSI---------------------------------------------ILIP 455 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeE---------------------------------------------eecc
Confidence 4799999999999999999999999999987 2244
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
.+|+|||.+....+|.+|+.+|++..+.++.|++.|+..+..+
T Consensus 456 ~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 456 PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 6999999999999999999999999999999999999765544
No 112
>KOG0112|consensus
Probab=99.03 E-value=3.2e-10 Score=111.38 Aligned_cols=162 Identities=23% Similarity=0.299 Sum_probs=135.6
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....+|||+|||+..+++.+|+..|..+|.|.+|.|-.-. -+....||||.|.+.+.+-.|+..+.+..|..-.+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 45567899999999999999999999999999999885542 23445799999999999999999999987776666666
Q ss_pred eCCCccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCC
Q psy3016 110 KASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLD 189 (305)
Q Consensus 110 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 189 (305)
+... .......+++++|...+....+...|..||.|..+
T Consensus 447 lG~~---kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~I-------------------------------------- 485 (975)
T KOG0112|consen 447 LGQP---KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRII-------------------------------------- 485 (975)
T ss_pred cccc---ccccceeeccCCCCCCChHHHHHHHhhccCcceee--------------------------------------
Confidence 6544 23345679999999999999999999999999854
Q ss_pred CCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecC--eeeEEEEeeec
Q psy3016 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCN--RPISVSYAFKK 240 (305)
Q Consensus 190 ~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g--~~l~v~~a~~~ 240 (305)
+..+..-||||.|++...|..|+..|-|..|++ +.+.|.|+.+.
T Consensus 486 -------dy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 486 -------DYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred -------ecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 234557799999999999999999999999955 77889998654
No 113
>KOG0105|consensus
Probab=99.00 E-value=4.4e-10 Score=91.70 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=67.8
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..+.|||+|||.++-+.+|.++|-+||.|..+ +.++. -
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~i-------------------------------------eLK~r-----~ 42 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREI-------------------------------------ELKNR-----P 42 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEE-------------------------------------EeccC-----C
Confidence 35789999999999999999999999999865 11111 2
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
....||||+|++..+|..||..-+|..++|+.|+|.|+..-
T Consensus 43 g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 43 GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 34779999999999999999999999999999999998654
No 114
>KOG4660|consensus
Probab=98.99 E-value=1e-09 Score=103.05 Aligned_cols=163 Identities=22% Similarity=0.262 Sum_probs=113.0
Q ss_pred CCCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCe
Q psy3016 25 EGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGK 104 (305)
Q Consensus 25 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~ 104 (305)
..|.+.....++|||-|||..|++++|+++|+.||+|..|+. +....|..||+|-|..+|+.|+++|++.++.|+
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 467777888999999999999999999999999999999765 344669999999999999999999999999999
Q ss_pred eeEEeeCCCccccc-------------------cc--cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCc
Q psy3016 105 PIRVNKASSHQKNL-------------------DV--GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGK 163 (305)
Q Consensus 105 ~l~v~~~~~~~~~~-------------------~~--~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~ 163 (305)
.|............ .. ...++ +.|++..+...+..++.-+|.+..
T Consensus 141 ~~k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~~~~~~~~------------- 206 (549)
T KOG4660|consen 141 RIKRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHISSVDGSSPG------------- 206 (549)
T ss_pred hhcCCCcccccchhcccchhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcchhccCcccc-------------
Confidence 88832221110000 00 11122 225555555444444544454431
Q ss_pred ceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeee
Q psy3016 164 PIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239 (305)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 239 (305)
.+++.-...-|+.|.+..++..+...+ |..+.+.....+|+..
T Consensus 207 --------------------------------~~~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 207 --------------------------------RETPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred --------------------------------ccccchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 122333335677888888886666633 7778888888888765
No 115
>KOG0153|consensus
Probab=98.98 E-value=1.9e-09 Score=95.91 Aligned_cols=80 Identities=25% Similarity=0.444 Sum_probs=70.7
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHh-cCceeCCeeeEE
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM-NMIKLYGKPIRV 108 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l-~g~~~~g~~l~v 108 (305)
.+....+||||+|-..++|.+|++.|.+||+|.+|.++..+ ++|||+|.+.+.|+.|.+++ +...+.|++|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 44567799999999999999999999999999999997654 79999999999999998764 567889999999
Q ss_pred eeCCCcc
Q psy3016 109 NKASSHQ 115 (305)
Q Consensus 109 ~~~~~~~ 115 (305)
.|..+.+
T Consensus 298 ~Wg~~~~ 304 (377)
T KOG0153|consen 298 KWGRPKQ 304 (377)
T ss_pred EeCCCcc
Confidence 9998843
No 116
>KOG4210|consensus
Probab=98.97 E-value=6.9e-10 Score=99.55 Aligned_cols=170 Identities=18% Similarity=0.286 Sum_probs=139.7
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
...++.|+|++...+.+.+...++..+|......+........++|++++.|...+.+..|+.......+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 46789999999999999999999999998888888877777889999999999999999999854334555555544433
Q ss_pred CCccc---------ccccccccc-ccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcc
Q psy3016 112 SSHQK---------NLDVGANIF-IGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGA 181 (305)
Q Consensus 112 ~~~~~---------~~~~~~~l~-v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (305)
..... ......++| |++++.++++++|+..|..+|.|..+
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~------------------------------ 215 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSV------------------------------ 215 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceee------------------------------
Confidence 32221 112345666 99999999999999999999999876
Q ss_pred eeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 182 NIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 182 ~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
++..+..++..+|++||+|.+..++..++.. ....+.++++.+.+.....
T Consensus 216 ---------r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 216 ---------RLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred ---------ccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 6788888999999999999999999999998 8888999999999876653
No 117
>KOG0415|consensus
Probab=98.96 E-value=5e-10 Score=99.69 Aligned_cols=85 Identities=27% Similarity=0.438 Sum_probs=79.8
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
.++.+.|||.-|.+-+|+++|.-+|+.||.|..| .|++|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sc---------------------------------------eVIRD~k 276 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSC---------------------------------------EVIRDRK 276 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceee---------------------------------------eEEeccc
Confidence 4467899999999999999999999999999998 8899999
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
+|.+..||||+|++.+++.+|.-+|++..|+++.|.|.|+..-.
T Consensus 277 tgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVs 320 (479)
T KOG0415|consen 277 TGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVS 320 (479)
T ss_pred ccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhh
Confidence 99999999999999999999999999999999999999986543
No 118
>KOG4208|consensus
Probab=98.94 E-value=2.5e-09 Score=88.95 Aligned_cols=84 Identities=25% Similarity=0.384 Sum_probs=76.3
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccC-CCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQS-GPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....-++|..+|..+.+.++..+|.+| |.|..+++-+++.||.++|||||+|.+.+.|.-|-+.||+..+.|+.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3345579999999999999999999988 788999998999999999999999999999999999999999999999998
Q ss_pred eCCCc
Q psy3016 110 KASSH 114 (305)
Q Consensus 110 ~~~~~ 114 (305)
.-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 76554
No 119
>KOG4205|consensus
Probab=98.83 E-value=4.4e-09 Score=94.81 Aligned_cols=116 Identities=24% Similarity=0.347 Sum_probs=92.4
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
....||||+||..+++++|+++|++||.|..+.++.|..+.+++||+||+|.+++.+.+++. .....|+|+.+.|..+.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 35689999999999999999999999999999999999999999999999999999999988 47889999999999999
Q ss_pred Ccccccccc----ccccccCCCchhcHHHHHHHHhhcCccc
Q psy3016 113 SHQKNLDVG----ANIFIGNLDPEVDEKLLYDTFSAFGVIL 149 (305)
Q Consensus 113 ~~~~~~~~~----~~l~v~nl~~~~t~~~l~~~f~~~g~v~ 149 (305)
++....... ...+..++....+.-.|...|..|+.+.
T Consensus 175 pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~ 215 (311)
T KOG4205|consen 175 PKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVG 215 (311)
T ss_pred chhhccccccccccccccccccccccccccchhccccCccc
Confidence 876544321 1122223444444445566666666653
No 120
>KOG4206|consensus
Probab=98.81 E-value=5.7e-09 Score=88.11 Aligned_cols=84 Identities=26% Similarity=0.446 Sum_probs=73.0
Q ss_pred cccccccCCCchhcHHHHHH----HHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYD----TFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~----~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~ 196 (305)
..+|||.||+..+..++|+. +|+.||.|..+ +--
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI-----------------------------------------~a~- 46 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDI-----------------------------------------SAF- 46 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEE-----------------------------------------Eec-
Confidence 34899999999999999877 99999999854 222
Q ss_pred CCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCcCCC
Q psy3016 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246 (305)
Q Consensus 197 ~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~~~~ 246 (305)
.+.+.+|.|||.|.+.+.|..|+++|+|..|.|+.+++.||+.+.+...+
T Consensus 47 kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~ 96 (221)
T KOG4206|consen 47 KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQ 96 (221)
T ss_pred CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhc
Confidence 45788999999999999999999999999999999999999988765444
No 121
>KOG0533|consensus
Probab=98.78 E-value=2.2e-08 Score=87.00 Aligned_cols=84 Identities=26% Similarity=0.358 Sum_probs=76.6
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
......+|+|.||++.|+++||+++|+.||.+..+-+..++ +|.+.|.|=|.|...++|..|++.+++..+.|+.+.+.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 45566889999999999999999999999999999998886 78999999999999999999999999999999999888
Q ss_pred eCCCc
Q psy3016 110 KASSH 114 (305)
Q Consensus 110 ~~~~~ 114 (305)
.....
T Consensus 158 ~i~~~ 162 (243)
T KOG0533|consen 158 IISSP 162 (243)
T ss_pred EecCc
Confidence 76643
No 122
>KOG0226|consensus
Probab=98.76 E-value=7.7e-09 Score=88.49 Aligned_cols=86 Identities=23% Similarity=0.409 Sum_probs=79.2
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
-++...+||.|.|-..++++-|...|.+|-.....++++|+.+|+++||+||.|.+..++..|+.+++|..++.+.|.++
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred eCCCcc
Q psy3016 110 KASSHQ 115 (305)
Q Consensus 110 ~~~~~~ 115 (305)
-+.-+.
T Consensus 266 kS~wke 271 (290)
T KOG0226|consen 266 KSEWKE 271 (290)
T ss_pred hhhHHh
Confidence 655443
No 123
>KOG4211|consensus
Probab=98.74 E-value=5e-07 Score=84.08 Aligned_cols=99 Identities=18% Similarity=0.196 Sum_probs=69.1
Q ss_pred CccceeecCccccccCcccccCCCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEE-EEEcccCCCCCcceEEEEE
Q psy3016 4 GREIQAGISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVN-VHMPKDRVTQTHQGYGFIE 82 (305)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-i~~~~~~~~~~~~g~afV~ 82 (305)
-|+|-+.-..+....|.-+.....+ ......|-+.+||..||++||.++|+..-.+.. |.+..+. .+++.|-|||+
T Consensus 75 ~RYIEVf~~~~~e~d~~~~~~g~~s--~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVq 151 (510)
T KOG4211|consen 75 HRYIEVFTAGGAEADWVMRPGGPNS--SANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQ 151 (510)
T ss_pred CceEEEEccCCccccccccCCCCCC--CCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEE
Confidence 3566666666555555444332222 256778999999999999999999998754444 5555664 56788999999
Q ss_pred EcCHHHHHHHHHHhcCceeCCeee
Q psy3016 83 FMGEEDADYAIKIMNMIKLYGKPI 106 (305)
Q Consensus 83 f~~~e~A~~Ai~~l~g~~~~g~~l 106 (305)
|.+.+.|++|+.. |...|.-|-|
T Consensus 152 F~sqe~ae~Al~r-hre~iGhRYI 174 (510)
T KOG4211|consen 152 FESQESAEIALGR-HRENIGHRYI 174 (510)
T ss_pred ecCHHHHHHHHHH-HHHhhccceE
Confidence 9999999999984 4433333333
No 124
>KOG4208|consensus
Probab=98.73 E-value=2.8e-08 Score=82.76 Aligned_cols=82 Identities=21% Similarity=0.413 Sum_probs=72.6
Q ss_pred ccccccccCCCchhcHHHHHHHHhhc-CcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAF-GVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~-g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
....+|+..++.-+.+.++...|..| |.+... ...+...|
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~---------------------------------------rlsRnkrT 88 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRF---------------------------------------RLSRNKRT 88 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEE---------------------------------------Eeeccccc
Confidence 45679999999999999999999998 666554 44578899
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
|+++|||||+|++.+.|.-|.+.||++.+.++-|.|.+-.+.
T Consensus 89 GNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 89 GNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred CCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 999999999999999999999999999999999999997554
No 125
>KOG0128|consensus
Probab=98.68 E-value=2.7e-09 Score=104.58 Aligned_cols=147 Identities=19% Similarity=0.226 Sum_probs=123.2
Q ss_pred ceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCCc
Q psy3016 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSH 114 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~~ 114 (305)
.++||.||+..+.+.+|...|..+|.+..+++..-...++-+|+||+.|...+++.+|+...+.+.+ |
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g----------- 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G----------- 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-h-----------
Confidence 4789999999999999999999999988887775556788999999999999999999995444433 3
Q ss_pred cccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCccc
Q psy3016 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMR 194 (305)
Q Consensus 115 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 194 (305)
...++|.|.+..-|.++++.++..+|.+... .+..
T Consensus 736 ------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~---------------------------------------~~vt 770 (881)
T KOG0128|consen 736 ------KISVAISGPPFQGTKEELKSLASKTGNVTSL---------------------------------------RLVT 770 (881)
T ss_pred ------hhhhheeCCCCCCchHHHHhhccccCCcccc---------------------------------------chhh
Confidence 2358999999999999999999999998764 2223
Q ss_pred CCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeee
Q psy3016 195 DPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239 (305)
Q Consensus 195 d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 239 (305)
. ..|+.+|.|||.|.+..++.+++......-+....+.|..+.+
T Consensus 771 ~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 771 V-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred h-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 3 3489999999999999999999998888877777777777655
No 126
>KOG0116|consensus
Probab=98.64 E-value=8.5e-08 Score=89.76 Aligned_cols=82 Identities=20% Similarity=0.334 Sum_probs=69.3
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
......+|||+|||.+++.++|+++|..||+|....|......+.+..||||+|.+.+.+..||++ +-..+.+++|.|+
T Consensus 284 ~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 284 PRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVE 362 (419)
T ss_pred eeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEE
Confidence 344455699999999999999999999999999988766543455559999999999999999995 6889999999998
Q ss_pred eCC
Q psy3016 110 KAS 112 (305)
Q Consensus 110 ~~~ 112 (305)
--.
T Consensus 363 ek~ 365 (419)
T KOG0116|consen 363 EKR 365 (419)
T ss_pred ecc
Confidence 543
No 127
>KOG2193|consensus
Probab=98.62 E-value=1.2e-08 Score=92.99 Aligned_cols=151 Identities=20% Similarity=0.382 Sum_probs=122.6
Q ss_pred ceEEEcCCCccccHHHHHHHhccC--CCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcC-ceeCCeeeEEeeC
Q psy3016 35 ATIYVGGLDDKVSETLMWELFVQS--GPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNM-IKLYGKPIRVNKA 111 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L~~~F~~~--G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g-~~~~g~~l~v~~~ 111 (305)
..+|+|||.+.++.++|..+|... |--..+ ++ ..|||||.+.+...|.+|++.++| .++.|..+.+..+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f-l~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce-ee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 368999999999999999999753 111111 11 238999999999999999999998 4788999999988
Q ss_pred CCccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCC
Q psy3016 112 SSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPE 191 (305)
Q Consensus 112 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 191 (305)
.++... ++.+-|.|++..+.++.+..++..||.++.|. .
T Consensus 74 v~kkqr---srk~Qirnippql~wevld~Ll~qyg~ve~~e--------------------------------------q 112 (584)
T KOG2193|consen 74 VPKKQR---SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCE--------------------------------------Q 112 (584)
T ss_pred hhHHHH---hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhh--------------------------------------h
Confidence 765433 45699999999999999999999999999873 3
Q ss_pred cccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEee
Q psy3016 192 IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238 (305)
Q Consensus 192 i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 238 (305)
++.|.++- ..-|.|.+.+.+..|+..++|..+.+..+++.|--
T Consensus 113 vnt~~eta----vvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 113 VNTDSETA----VVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred hccchHHH----HHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 45555432 23468899999999999999999999999999853
No 128
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.60 E-value=3.2e-07 Score=68.67 Aligned_cols=80 Identities=19% Similarity=0.274 Sum_probs=68.6
Q ss_pred ceEEEcCCCccccHHHHHHHhcc--CCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeC----CeeeEE
Q psy3016 35 ATIYVGGLDDKVSETLMWELFVQ--SGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLY----GKPIRV 108 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L~~~F~~--~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~----g~~l~v 108 (305)
+||.|.|||...|.++|.+++.. .|...-+.+..|-.++.+.|||||-|.+++.|.+..+.++|..|. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999988875 457777888888888899999999999999999999999998886 456677
Q ss_pred eeCCCc
Q psy3016 109 NKASSH 114 (305)
Q Consensus 109 ~~~~~~ 114 (305)
.+|.-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 776544
No 129
>KOG4209|consensus
Probab=98.59 E-value=7.6e-08 Score=83.74 Aligned_cols=83 Identities=24% Similarity=0.366 Sum_probs=77.0
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.......+||||+...+|.+++...|+.||.|..+.+..+...+.++|||||+|.+.+.+..++. |++..+.|+.+.+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 44567799999999999999999999999999999999999999999999999999999999999 99999999999998
Q ss_pred eCCC
Q psy3016 110 KASS 113 (305)
Q Consensus 110 ~~~~ 113 (305)
+..-
T Consensus 176 ~~r~ 179 (231)
T KOG4209|consen 176 LKRT 179 (231)
T ss_pred eeee
Confidence 7554
No 130
>KOG4676|consensus
Probab=98.57 E-value=1.1e-07 Score=85.95 Aligned_cols=156 Identities=10% Similarity=0.085 Sum_probs=119.5
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCC---CCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVT---QTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~---~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
....|-|.||.+.+|.++++.+|...|.|.++.|+.+..+ ......|||.|.+...+..|.. |.+.++-|+.|.|.
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 3448999999999999999999999999999999875422 3445789999999999998877 77788888888776
Q ss_pred eCCCcc-c------------------------------------------------------cccccccccccCCCchhc
Q psy3016 110 KASSHQ-K------------------------------------------------------NLDVGANIFIGNLDPEVD 134 (305)
Q Consensus 110 ~~~~~~-~------------------------------------------------------~~~~~~~l~v~nl~~~~t 134 (305)
.+.... . -.+...+++|.+|...+.
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~ 164 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAI 164 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhc
Confidence 543200 0 000126799999999999
Q ss_pred HHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHH
Q psy3016 135 EKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEA 214 (305)
Q Consensus 135 ~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~ 214 (305)
..++.+.|..+|+|.+.+. ..+...-+|-+.|....+
T Consensus 165 l~e~~e~f~r~Gev~ya~~-------------------------------------------ask~~s~~c~~sf~~qts 201 (479)
T KOG4676|consen 165 LPESGESFERKGEVSYAHT-------------------------------------------ASKSRSSSCSHSFRKQTS 201 (479)
T ss_pred chhhhhhhhhcchhhhhhh-------------------------------------------hccCCCcchhhhHhhhhh
Confidence 9999999999999987521 123345578899998888
Q ss_pred HHHHHHHhcCeeecCeeeE
Q psy3016 215 SDASIDAMHGQYLCNRPIS 233 (305)
Q Consensus 215 A~~Al~~l~~~~~~g~~l~ 233 (305)
...|+. ++|.++.-...+
T Consensus 202 ~~halr-~~gre~k~qhsr 219 (479)
T KOG4676|consen 202 SKHALR-SHGRERKRQHSR 219 (479)
T ss_pred HHHHHH-hcchhhhhhhhh
Confidence 888988 678777643333
No 131
>KOG0151|consensus
Probab=98.45 E-value=5.3e-07 Score=87.10 Aligned_cols=82 Identities=24% Similarity=0.451 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccC---CCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDR---VTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~---~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
...++|||+||++.++++.|...|..||+|.+++++.-. ...+.+.+|||-|-+..+|++|++.|+|+.+.+..+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 345789999999999999999999999999999998643 23456689999999999999999999999999999999
Q ss_pred eeCCC
Q psy3016 109 NKASS 113 (305)
Q Consensus 109 ~~~~~ 113 (305)
.|+..
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 99853
No 132
>KOG1457|consensus
Probab=98.38 E-value=1.2e-06 Score=73.86 Aligned_cols=91 Identities=18% Similarity=0.294 Sum_probs=70.9
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||.+||.++---+|+.+|.+|.--+.+... +.+....
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK--------------------------------------~Tsk~~~ 74 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLK--------------------------------------YTSKGDQ 74 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeee--------------------------------------eccCCCc
Confidence 36899999999999999999999998655543100 2222223
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeee---cCeeeEEEEeeecCCcCCCCC
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYL---CNRPISVSYAFKKDSKGDRHG 248 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~---~g~~l~v~~a~~~~~~~~~~~ 248 (305)
..+-+|||.|.+..+|..|+++|||..| .+.+|++.+++.......+..
T Consensus 75 ~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~ 126 (284)
T KOG1457|consen 75 VCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKRKRRKG 126 (284)
T ss_pred cccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCcccccCCC
Confidence 4567999999999999999999999998 688999999987765443333
No 133
>KOG4849|consensus
Probab=98.37 E-value=1.6e-06 Score=77.42 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=66.9
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
.-|+||+||-+.+|+++|.+.+...|.-. + ++++++....+|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~-~------------------------------------~dmKFFENR~NGQ 122 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQ-F------------------------------------ADMKFFENRTNGQ 122 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHH-H------------------------------------hhhhhhhcccCCc
Confidence 35899999999999999999888777543 2 3457888889999
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEe
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a 237 (305)
++|||+|-..+....++.++.|-.++|.|..-+|.-+
T Consensus 123 SKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 123 SKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred ccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 9999999999999999999999999998876665443
No 134
>KOG0153|consensus
Probab=98.35 E-value=5.7e-07 Score=80.35 Aligned_cols=75 Identities=23% Similarity=0.396 Sum_probs=64.2
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
...+|||++|...+++.+|++.|..||+|..+ .++.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi---------------------------------------~~~~----- 262 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSI---------------------------------------RILP----- 262 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeE---------------------------------------Eeec-----
Confidence 35789999999999999999999999999986 2222
Q ss_pred CccceEEEEeCChHHHHHHHHHh-cCeeecCeeeEEEEeee
Q psy3016 200 NSKGFAFINYASFEASDASIDAM-HGQYLCNRPISVSYAFK 239 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l-~~~~~~g~~l~v~~a~~ 239 (305)
.+++|||+|.+.+.|+.|..++ |...|+|.+|+|.|...
T Consensus 263 -~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 263 -RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred -ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 2569999999999999998764 55567999999999987
No 135
>KOG4661|consensus
Probab=98.31 E-value=1e-06 Score=83.20 Aligned_cols=81 Identities=20% Similarity=0.407 Sum_probs=71.1
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
.++|||.+|...+-..+|+.+|++||+|.-. +++....+-.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGA---------------------------------------KVVTNaRsPG 445 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGA---------------------------------------KVVTNARSPG 445 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceece---------------------------------------eeeecCCCCC
Confidence 5789999999999999999999999999754 4555555555
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
.+.|+||++++.++|.++|..||.+++.|+-|.|.-++..
T Consensus 446 aRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNE 485 (940)
T KOG4661|consen 446 ARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNE 485 (940)
T ss_pred cceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccC
Confidence 7889999999999999999999999999999999987643
No 136
>KOG4660|consensus
Probab=98.24 E-value=1e-06 Score=83.28 Aligned_cols=70 Identities=20% Similarity=0.418 Sum_probs=63.8
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
...+|+|.|||..+++++|..+|+.||+|..+. .+-
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir--------------------------------------------~t~ 109 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIR--------------------------------------------ETP 109 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhh--------------------------------------------ccc
Confidence 467899999999999999999999999998752 345
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeE
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPIS 233 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~ 233 (305)
..+|.+||+|-++.+|+.|+++|+++++.|+.|+
T Consensus 110 ~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 110 NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 6789999999999999999999999999999998
No 137
>KOG0151|consensus
Probab=98.23 E-value=3.6e-06 Score=81.48 Aligned_cols=81 Identities=21% Similarity=0.502 Sum_probs=71.3
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC---C
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP---D 197 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~---~ 197 (305)
..++||+||++.++++.|...|+.||.|..+ +||+.. +
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasv---------------------------------------KimwpRtEeE 214 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASV---------------------------------------KIMWPRTEEE 214 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccce---------------------------------------eeecccchhh
Confidence 4789999999999999999999999999987 555544 2
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
....+.++||-|-+..||.+|+..|+|..+.+..+++-|++.-
T Consensus 215 k~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk~V 257 (877)
T KOG0151|consen 215 KRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGKAV 257 (877)
T ss_pred hccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecccccc
Confidence 3456889999999999999999999999999999999998543
No 138
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.20 E-value=6.1e-06 Score=59.22 Aligned_cols=69 Identities=25% Similarity=0.350 Sum_probs=48.3
Q ss_pred ceEEEcCCCccccHHH----HHHHhccCC-CeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 35 ATIYVGGLDDKVSETL----MWELFVQSG-PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~----L~~~F~~~G-~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
..|+|.|||...+... |++++..+| .|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4799999999888665 567777887 666652 2679999999999999999999999999999999
Q ss_pred eCCC
Q psy3016 110 KASS 113 (305)
Q Consensus 110 ~~~~ 113 (305)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8743
No 139
>KOG4849|consensus
Probab=98.13 E-value=1e-05 Score=72.42 Aligned_cols=76 Identities=14% Similarity=0.282 Sum_probs=68.2
Q ss_pred CceEEEcCCCccccHHHHHHHhccCC--CeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 34 DATIYVGGLDDKVSETLMWELFVQSG--PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 34 ~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
..++|||||-.++|++||.+.+...| .+.++++..++.+|.+||||+|...+.....+-|+.|-...|+|..-.|-
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 34799999999999999999999888 67888999999999999999999999999999999999999998765553
No 140
>KOG0533|consensus
Probab=98.13 E-value=5.6e-06 Score=72.11 Aligned_cols=82 Identities=20% Similarity=0.320 Sum_probs=70.6
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
....|+|.||+..+++++|.++|..||.+..+ .+-+| ..|
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~---------------------------------------~vhy~-~~G 121 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRV---------------------------------------AVHYD-RAG 121 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEE---------------------------------------eeccC-CCC
Confidence 34679999999999999999999999977654 34555 459
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
.+.|.|=|.|...+||.+|++.+||..++|+.+++.......
T Consensus 122 ~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 122 RSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPS 163 (243)
T ss_pred CCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcc
Confidence 999999999999999999999999999999999888765443
No 141
>KOG4307|consensus
Probab=98.11 E-value=2.5e-06 Score=82.38 Aligned_cols=169 Identities=14% Similarity=0.099 Sum_probs=127.5
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
+.+.+-+.+.+.+.++.|++++|... .|.+..|..+...+...|-++|+|....++.+|++. |...+-.|.+.+..+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCC
Confidence 45667778899999999999999754 566777766665555579999999999999999884 5566667777776543
Q ss_pred Ccccc--------------------------------------ccccccccccCCCchhcHHHHHHHHhhcCcccchhhh
Q psy3016 113 SHQKN--------------------------------------LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI 154 (305)
Q Consensus 113 ~~~~~--------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~ 154 (305)
..... .....+|||..||..+++..+.++|...-.|+..
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~--- 464 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDF--- 464 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhhe---
Confidence 21110 0124789999999999999999999987666531
Q ss_pred hhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEE
Q psy3016 155 MNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234 (305)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v 234 (305)
| .+.+- -+++.++.|||.|...+++..|...-+.++++.+.|+|
T Consensus 465 ----------------------------I-------~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 465 ----------------------------I-------ELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred ----------------------------e-------EeccC-CcccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 0 12222 34677889999999999999999988888899999999
Q ss_pred EEeeecCC
Q psy3016 235 SYAFKKDS 242 (305)
Q Consensus 235 ~~a~~~~~ 242 (305)
.-..+..+
T Consensus 509 ~si~~~~m 516 (944)
T KOG4307|consen 509 DSIADYAM 516 (944)
T ss_pred echhhHHH
Confidence 87655544
No 142
>KOG4209|consensus
Probab=98.04 E-value=4.2e-06 Score=72.86 Aligned_cols=81 Identities=22% Similarity=0.402 Sum_probs=73.8
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
....+||+|++..+|.+++...|+.+|.+..+ .+..|..++
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~---------------------------------------ti~~d~~~~ 140 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRV---------------------------------------TVPKDKFRG 140 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccce---------------------------------------eeeccccCC
Confidence 45789999999999999999999999999765 567787888
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
.++||+||+|.+.+.+.+|+. |++..|.|+.+.|++...+
T Consensus 141 ~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 141 HPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRTN 180 (231)
T ss_pred CcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeeee
Confidence 899999999999999999999 9999999999999998766
No 143
>KOG0116|consensus
Probab=98.03 E-value=1.5e-05 Score=74.92 Aligned_cols=79 Identities=24% Similarity=0.369 Sum_probs=63.5
Q ss_pred ccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCc
Q psy3016 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201 (305)
Q Consensus 122 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~ 201 (305)
..|||+|||.+++..+|.++|+.||.|... .|....-.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~---------------------------------------~I~vr~~~~~~ 329 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEG---------------------------------------GIQVRSPGGKN 329 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhccccccc---------------------------------------ceEEeccCCCc
Confidence 459999999999999999999999999875 23222112333
Q ss_pred cceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 202 ~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
..||||+|.+.+++..|+.+- -..+++++|.|.-.+..
T Consensus 330 ~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 330 PCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRPG 367 (419)
T ss_pred CceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecccc
Confidence 499999999999999999964 66789999999876553
No 144
>KOG0106|consensus
Probab=98.02 E-value=4.2e-06 Score=71.38 Aligned_cols=71 Identities=24% Similarity=0.487 Sum_probs=63.6
Q ss_pred cccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCcc
Q psy3016 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSK 202 (305)
Q Consensus 123 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~ 202 (305)
.+||++|++.+.+.+|..+|..||.+..+ -...
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~-----------------------------------------------~mk~ 35 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDA-----------------------------------------------DMKN 35 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccc-----------------------------------------------eeec
Confidence 58999999999999999999999999765 1236
Q ss_pred ceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 203 g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
||+||+|++..+|..|+..||+..+.+-.+.|.|+...
T Consensus 36 gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 36 GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 78899999999999999999999999988999998754
No 145
>KOG1365|consensus
Probab=97.97 E-value=5.4e-05 Score=68.74 Aligned_cols=155 Identities=16% Similarity=0.152 Sum_probs=108.2
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
..+...-|-..+||...++.+|..+|.-.--..-...+.....|+..|.|.|.|.+.|.-+.|++. +...+.++-|.|.
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievY 134 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVY 134 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeee
Confidence 445556678899999999999999998643322233333334567789999999999999999984 6677778888886
Q ss_pred eCCCccc---------------cccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCcccc
Q psy3016 110 KASSHQK---------------NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQ 174 (305)
Q Consensus 110 ~~~~~~~---------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (305)
.+...+- .+...-.|...+||.+.++.++.++|...-.|..
T Consensus 135 ka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~------------------------ 190 (508)
T KOG1365|consen 135 KATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTG------------------------ 190 (508)
T ss_pred ccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccC------------------------
Confidence 6554221 0112335677999999999999999974333321
Q ss_pred ccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHH
Q psy3016 175 KNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDA 221 (305)
Q Consensus 175 ~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~ 221 (305)
.+.++-++.. -+|+..|-|||.|...++|..|+.+
T Consensus 191 -----------g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 191 -----------GTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred -----------CccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH
Confidence 0001112222 2488899999999999999999864
No 146
>KOG4454|consensus
Probab=97.97 E-value=1.1e-05 Score=67.95 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=67.2
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+|+-..++++.|.++|-..|.|..+ .|..+ ..+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv---------------------------------------~ip~~-~d~ 47 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKV---------------------------------------GIPSG-QDQ 47 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEE---------------------------------------eCCCC-ccC
Confidence 45899999999999999999999999999865 33333 446
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEee
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 238 (305)
+.+ ||||.|++.-+..-|++.+||-.+.++.+++++-.
T Consensus 48 ~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 48 EQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred CCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 667 99999999999999999999999999988888743
No 147
>KOG1548|consensus
Probab=97.92 E-value=1.8e-05 Score=70.83 Aligned_cols=89 Identities=20% Similarity=0.350 Sum_probs=71.5
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
...|||.|||.++|.+++.++|+.+|.|.... =....-.++.++ ..|.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~-------------------------------~t~epk~KlYrd-~~G~ 181 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDP-------------------------------QTGEPKVKLYRD-NQGK 181 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccC-------------------------------CCCCeeEEEEec-CCCC
Confidence 45699999999999999999999999886530 000011133444 3488
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
.+|=|++.|.-.++..-|+..|++..+.|+.|+|..|+-..
T Consensus 182 lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~ 222 (382)
T KOG1548|consen 182 LKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQM 222 (382)
T ss_pred ccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhhhh
Confidence 99999999999999999999999999999999999987543
No 148
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.91 E-value=2.4e-05 Score=69.84 Aligned_cols=108 Identities=18% Similarity=0.291 Sum_probs=77.1
Q ss_pred ceEEEcCCCccccHHHH------HHHhccCCCeEEEEEcccCCC-CCcceEE--EEEEcCHHHHHHHHHHhcCceeCCee
Q psy3016 35 ATIYVGGLDDKVSETLM------WELFVQSGPVVNVHMPKDRVT-QTHQGYG--FIEFMGEEDADYAIKIMNMIKLYGKP 105 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L------~~~F~~~G~i~~i~~~~~~~~-~~~~g~a--fV~f~~~e~A~~Ai~~l~g~~~~g~~ 105 (305)
.-|||-+|++.+..+++ .++|.+||.|..|.|-+...+ ....+.+ ||+|.+.|+|.+||...+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 36899999998887773 478999999999988654421 1222334 99999999999999999999999999
Q ss_pred eEEeeCCCc-------cccccccccccccCCCc---hhcHHHHHHHH
Q psy3016 106 IRVNKASSH-------QKNLDVGANIFIGNLDP---EVDEKLLYDTF 142 (305)
Q Consensus 106 l~v~~~~~~-------~~~~~~~~~l~v~nl~~---~~t~~~l~~~f 142 (305)
|+..+...+ ...-....|.|+..-.. ..|.++|...-
T Consensus 195 lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~q 241 (480)
T COG5175 195 LKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNSQ 241 (480)
T ss_pred EeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhhh
Confidence 999876542 12222344566543322 46777776654
No 149
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.90 E-value=3.7e-05 Score=57.58 Aligned_cols=82 Identities=18% Similarity=0.185 Sum_probs=64.0
Q ss_pred ccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCc
Q psy3016 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201 (305)
Q Consensus 122 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~ 201 (305)
.+|=|.|+|...|.++|.+++.....-..- -.-+..|..++..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yD-------------------------------------F~YLPiDf~~~~N 44 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYD-------------------------------------FFYLPIDFKNKCN 44 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcce-------------------------------------EEEeeeeccCCCc
Confidence 467899999999999999999774221110 0134666677889
Q ss_pred cceEEEEeCChHHHHHHHHHhcCeeec----CeeeEEEEeeec
Q psy3016 202 KGFAFINYASFEASDASIDAMHGQYLC----NRPISVSYAFKK 240 (305)
Q Consensus 202 ~g~afV~f~~~~~A~~Al~~l~~~~~~----g~~l~v~~a~~~ 240 (305)
.|||||.|.+.+.|.+-.+.++|..+. .+...|.||+-.
T Consensus 45 ~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAriQ 87 (97)
T PF04059_consen 45 LGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYARIQ 87 (97)
T ss_pred eEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhHhh
Confidence 999999999999999999999999873 567788888543
No 150
>KOG1995|consensus
Probab=97.81 E-value=1.9e-05 Score=71.14 Aligned_cols=85 Identities=24% Similarity=0.337 Sum_probs=76.3
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeE--------EEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCcee
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVV--------NVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKL 101 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~ 101 (305)
......+|||-+|+.++++++|.++|..+|.|. .|.|.+++.|++.|+-|.|+|.+...|+.|+..+++..+
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 456677999999999999999999999999773 478888999999999999999999999999999999999
Q ss_pred CCeeeEEeeCCCc
Q psy3016 102 YGKPIRVNKASSH 114 (305)
Q Consensus 102 ~g~~l~v~~~~~~ 114 (305)
.+..|+|..+...
T Consensus 142 ~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 142 CGNTIKVSLAERR 154 (351)
T ss_pred cCCCchhhhhhhc
Confidence 9988888776643
No 151
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.77 E-value=6.8e-05 Score=53.91 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=29.8
Q ss_pred cceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeee
Q psy3016 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239 (305)
Q Consensus 202 ~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 239 (305)
.+.|+|+|.+.+.|.+|.+.|+|..+.|..|.|+|...
T Consensus 39 ~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 39 GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 57899999999999999999999999999999999843
No 152
>KOG0128|consensus
Probab=97.73 E-value=5.5e-06 Score=81.86 Aligned_cols=158 Identities=18% Similarity=0.172 Sum_probs=120.6
Q ss_pred cCCCCceEEEcCCCccccHH-HHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 30 SGDGDATIYVGGLDDKVSET-LMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~-~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
..-......+.++.+..-.. ..++.|..+|.|+.|++.......+...++++.+..+.+++.|.. ..+.-+.++...+
T Consensus 567 ~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av 645 (881)
T KOG0128|consen 567 APLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAV 645 (881)
T ss_pred hhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccC
Confidence 33445566777887766555 678899999999999997744444455589999999999998877 4677778888888
Q ss_pred eeCCCcccccc---------ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCC
Q psy3016 109 NKASSHQKNLD---------VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDV 179 (305)
Q Consensus 109 ~~~~~~~~~~~---------~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (305)
..+.+...... ...++||.||+....+++|...|..+|.+..+
T Consensus 646 ~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~v---------------------------- 697 (881)
T KOG0128|consen 646 GLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVV---------------------------- 697 (881)
T ss_pred CCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhH----------------------------
Confidence 77665432211 13579999999999999999999999998876
Q ss_pred cceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeee
Q psy3016 180 GANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYL 227 (305)
Q Consensus 180 ~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~ 227 (305)
++.....++..+|+||+.|...+++.+|+....+..+
T Consensus 698 -----------qi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 698 -----------QIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred -----------HHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 3344445688899999999999999999975554433
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.70 E-value=9.6e-05 Score=56.46 Aligned_cols=58 Identities=24% Similarity=0.358 Sum_probs=38.9
Q ss_pred ceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcC
Q psy3016 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNM 98 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g 98 (305)
+.|+|.++...++-++|++.|+.||.|..|.+.... .-|||-|.+.++|+.|++.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHh
Confidence 468899999999999999999999999999985543 5699999999999999997653
No 154
>KOG4210|consensus
Probab=97.60 E-value=4.6e-05 Score=68.55 Aligned_cols=83 Identities=24% Similarity=0.501 Sum_probs=74.9
Q ss_pred CCCceEE-EcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEee
Q psy3016 32 DGDATIY-VGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110 (305)
Q Consensus 32 ~~~~~l~-V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~ 110 (305)
....++| |++|+..+++++|+..|..+|.|..+++..+..++..+|||||.|.+...+..++.. +...+.++.+.+..
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3445666 999999999999999999999999999999999999999999999999999999987 88889999999988
Q ss_pred CCCcc
Q psy3016 111 ASSHQ 115 (305)
Q Consensus 111 ~~~~~ 115 (305)
..+..
T Consensus 261 ~~~~~ 265 (285)
T KOG4210|consen 261 DEPRP 265 (285)
T ss_pred CCCCc
Confidence 77654
No 155
>KOG2416|consensus
Probab=97.57 E-value=0.00028 Score=67.47 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=64.5
Q ss_pred cccccccccCCCchhcHHHHHHHHhhc-CcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAF-GVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~-g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
..++.|||.||-...|.-+|+.++.+- |.|...| | |
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~W----------------------------------------m-D-- 478 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFW----------------------------------------M-D-- 478 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHH----------------------------------------H-H--
Confidence 346889999999999999999999964 4554432 1 1
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeee---cCeeeEEEEeeecCCc
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYL---CNRPISVSYAFKKDSK 243 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~---~g~~l~v~~a~~~~~~ 243 (305)
+-+..|||.|.+.++|.....+|||-.| +.++|.+.|.......
T Consensus 479 --kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~deld 525 (718)
T KOG2416|consen 479 --KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRADELD 525 (718)
T ss_pred --HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecchhHHH
Confidence 1255699999999999999999999877 7799999998766543
No 156
>KOG3152|consensus
Probab=97.50 E-value=6e-05 Score=65.01 Aligned_cols=73 Identities=18% Similarity=0.301 Sum_probs=62.6
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCC--------CCcce----EEEEEEcCHHHHHHHHHHhcCce
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVT--------QTHQG----YGFIEFMGEEDADYAIKIMNMIK 100 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~--------~~~~g----~afV~f~~~e~A~~Ai~~l~g~~ 100 (305)
....||+++||+.++..-|+++|+.||.|-.|.|.....+ |.+++ -|+|+|.+...|..+-+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5568999999999999999999999999999999775544 22222 27899999999999999999999
Q ss_pred eCCee
Q psy3016 101 LYGKP 105 (305)
Q Consensus 101 ~~g~~ 105 (305)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99874
No 157
>KOG2314|consensus
Probab=97.50 E-value=0.0004 Score=66.11 Aligned_cols=81 Identities=25% Similarity=0.338 Sum_probs=65.1
Q ss_pred CCCCceEEEcCCCccc--c----HHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeC-C
Q psy3016 31 GDGDATIYVGGLDDKV--S----ETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLY-G 103 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~--t----e~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~-g 103 (305)
.--...|+|.|+|--- . ..-|..+|+++|+|..+.+..+..+| .+||.|++|.+..+|..|++.|||..+. .
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 3345678999998621 1 23356789999999999998887655 9999999999999999999999998776 6
Q ss_pred eeeEEeeCC
Q psy3016 104 KPIRVNKAS 112 (305)
Q Consensus 104 ~~l~v~~~~ 112 (305)
+.+.|+...
T Consensus 134 Htf~v~~f~ 142 (698)
T KOG2314|consen 134 HTFFVRLFK 142 (698)
T ss_pred ceEEeehhh
Confidence 788887544
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.47 E-value=0.00011 Score=56.03 Aligned_cols=70 Identities=10% Similarity=0.267 Sum_probs=43.0
Q ss_pred ccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCc
Q psy3016 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201 (305)
Q Consensus 122 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~ 201 (305)
+.|+|.+++..++.++|++.|+.||.|.++ + ....
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yV---------------------------------------D------~~~G 36 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYV---------------------------------------D------FSRG 36 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEE---------------------------------------E--------TT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceE---------------------------------------E------ecCC
Confidence 457888899999999999999999999876 2 2233
Q ss_pred cceEEEEeCChHHHHHHHHHhcCe-----eecCeeeEEEE
Q psy3016 202 KGFAFINYASFEASDASIDAMHGQ-----YLCNRPISVSY 236 (305)
Q Consensus 202 ~g~afV~f~~~~~A~~Al~~l~~~-----~~~g~~l~v~~ 236 (305)
...|||+|.+.+.|..|+.++... .+.+..++++.
T Consensus 37 ~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 37 DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 457999999999999999887544 45666665554
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.41 E-value=0.00041 Score=46.03 Aligned_cols=52 Identities=23% Similarity=0.498 Sum_probs=42.5
Q ss_pred ceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHH
Q psy3016 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai 93 (305)
+.|-|.+.+.+..+. +...|..||+|.++.+- ....+.||+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 578899999877654 55588899999999984 23478999999999999985
No 160
>KOG1995|consensus
Probab=97.35 E-value=0.00017 Score=65.19 Aligned_cols=90 Identities=29% Similarity=0.366 Sum_probs=75.2
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
..+|||..++..+++++|.++|...|.|..-+. + ... -+.+-+|.+|+.
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~-----------------------t-~kP-------ki~~y~dkeT~~ 114 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKR-----------------------T-GKP-------KIKIYTDKETGA 114 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCC-----------------------C-CCc-------chhccccccccC
Confidence 468999999999999999999999998864210 0 001 114677778999
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
.++-|.|.|++...|+.|+.-++++.|.+.+|+|.+|..+.
T Consensus 115 ~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 115 PKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERRT 155 (351)
T ss_pred cCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhcc
Confidence 99999999999999999999999999999999999997665
No 161
>KOG4307|consensus
Probab=97.29 E-value=0.00074 Score=65.80 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=66.6
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEee
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~ 110 (305)
+.+.|-+.|+|++++-+||.++|..|-.+-.-.+++....|...|-|.|-|++.+.|..|...|++..|..|++.+..
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 344789999999999999999999997664433344445788999999999999999999999999999999998864
No 162
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.03 E-value=0.0031 Score=47.60 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=53.2
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEc-ccC------CCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCe
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMP-KDR------VTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGK 104 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~-~~~------~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~ 104 (305)
...+.|.|-+.|.. ....+-+.|++||.|.+..-. ++. .......+--|+|++..+|.+|+. .||..+.|.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 34567889999998 456788899999999877511 110 001234688999999999999999 599999885
Q ss_pred -eeEEeeCC
Q psy3016 105 -PIRVNKAS 112 (305)
Q Consensus 105 -~l~v~~~~ 112 (305)
.+-|.+.+
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 55566664
No 163
>KOG0115|consensus
Probab=97.02 E-value=0.0012 Score=57.19 Aligned_cols=103 Identities=21% Similarity=0.250 Sum_probs=81.2
Q ss_pred HHHHHHHHHhcCceeCCeeeEEeeCCCccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCccee
Q psy3016 87 EDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIR 166 (305)
Q Consensus 87 e~A~~Ai~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~ 166 (305)
.-|..|..+|++....|+.|+|.++.. ..|||.||...++-+.+.+-|..||.|+..
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~--------a~l~V~nl~~~~sndll~~~f~~fg~~e~a--------------- 61 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH--------AELYVVNLMQGASNDLLEQAFRRFGPIERA--------------- 61 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc--------ceEEEEecchhhhhHHHHHhhhhcCccchh---------------
Confidence 346677788999999999999999875 249999999999999999999999999874
Q ss_pred eecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCee----ecCeeeEEEEe
Q psy3016 167 VNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQY----LCNRPISVSYA 237 (305)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~----~~g~~l~v~~a 237 (305)
.+..| ..++..+-++|.|...-.|.+|++.+...- ..++...|.-+
T Consensus 62 ------------------------v~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 62 ------------------------VAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ------------------------eeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 22333 457888889999999999999999874332 24455555433
No 164
>KOG2202|consensus
Probab=97.01 E-value=0.00049 Score=59.58 Aligned_cols=44 Identities=18% Similarity=0.410 Sum_probs=38.9
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
+-+|-+||.|...++|.+|+..||+.|+.|++|.+.|+.....+
T Consensus 108 hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~r 151 (260)
T KOG2202|consen 108 HLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFR 151 (260)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchh
Confidence 45788999999999999999999999999999999998655433
No 165
>KOG2314|consensus
Probab=97.01 E-value=0.0016 Score=62.19 Aligned_cols=76 Identities=24% Similarity=0.400 Sum_probs=58.8
Q ss_pred cccccccCCCch------hcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCccc
Q psy3016 121 GANIFIGNLDPE------VDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMR 194 (305)
Q Consensus 121 ~~~l~v~nl~~~------~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 194 (305)
..+|+|.|+|.- .-...|..+|+++|++... .+..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~---------------------------------------~~P~ 98 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNM---------------------------------------YYPI 98 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccce---------------------------------------eecc
Confidence 467888888862 2334578889999988754 4455
Q ss_pred CCCCCCccceEEEEeCChHHHHHHHHHhcCeee-cCeeeEEEE
Q psy3016 195 DPDTGNSKGFAFINYASFEASDASIDAMHGQYL-CNRPISVSY 236 (305)
Q Consensus 195 d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~-~g~~l~v~~ 236 (305)
+.+ |.++||.|++|.+..+|..|++.|||+.+ .+.++.|..
T Consensus 99 ~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~ 140 (698)
T KOG2314|consen 99 DEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRL 140 (698)
T ss_pred Ccc-CCeeeEEEEEecChhhHHHHHHhcccceecccceEEeeh
Confidence 655 55999999999999999999999999988 556666654
No 166
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.92 E-value=0.0011 Score=59.41 Aligned_cols=78 Identities=21% Similarity=0.391 Sum_probs=58.3
Q ss_pred ccccccCCCchhcHHHH------HHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccC
Q psy3016 122 ANIFIGNLDPEVDEKLL------YDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRD 195 (305)
Q Consensus 122 ~~l~v~nl~~~~t~~~l------~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d 195 (305)
+-+||-+|+..+..|++ .+.|+.||.|..+ +..
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KI-----------------------------------------vvN 153 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKI-----------------------------------------VVN 153 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEE-----------------------------------------Eec
Confidence 45888999988777763 5678889998743 211
Q ss_pred CCC-----CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 196 PDT-----GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 196 ~~~-----~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
.++ ..+..-.||.|.+.+||.+||.+.+|..++||.|+++|...+
T Consensus 154 kkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGTTK 203 (480)
T COG5175 154 KKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGTTK 203 (480)
T ss_pred ccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecCchH
Confidence 111 111122499999999999999999999999999999997643
No 167
>KOG1855|consensus
Probab=96.88 E-value=0.0014 Score=60.57 Aligned_cols=77 Identities=17% Similarity=0.131 Sum_probs=60.7
Q ss_pred CCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEccc---CCC--C-Cc-------ceEEEEEEcCHHHHHHH
Q psy3016 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKD---RVT--Q-TH-------QGYGFIEFMGEEDADYA 92 (305)
Q Consensus 26 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~---~~~--~-~~-------~g~afV~f~~~e~A~~A 92 (305)
.-.+..-.+++|.+.|||.+-..+-|.++|..+|.|..|+|.+- ..+ + .+ +-+|+|+|...+.|.+|
T Consensus 223 ~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA 302 (484)
T KOG1855|consen 223 EFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKA 302 (484)
T ss_pred CccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHH
Confidence 33444457899999999999999999999999999999999654 111 1 22 46899999999999999
Q ss_pred HHHhcCceeC
Q psy3016 93 IKIMNMIKLY 102 (305)
Q Consensus 93 i~~l~g~~~~ 102 (305)
.+.++....+
T Consensus 303 ~e~~~~e~~w 312 (484)
T KOG1855|consen 303 RELLNPEQNW 312 (484)
T ss_pred HHhhchhhhh
Confidence 9988654333
No 168
>KOG1924|consensus
Probab=96.79 E-value=0.0021 Score=63.64 Aligned_cols=6 Identities=17% Similarity=0.008 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy3016 89 ADYAIK 94 (305)
Q Consensus 89 A~~Ai~ 94 (305)
+.+|++
T Consensus 212 iIrClk 217 (1102)
T KOG1924|consen 212 IIRCLK 217 (1102)
T ss_pred HHHHHH
Confidence 333433
No 169
>KOG0129|consensus
Probab=96.77 E-value=0.0036 Score=59.32 Aligned_cols=69 Identities=22% Similarity=0.268 Sum_probs=61.5
Q ss_pred CCCcCCCCceEEEcCCCccccHHHHHHHhc-cCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHH
Q psy3016 27 GGESGDGDATIYVGGLDDKVSETLMWELFV-QSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95 (305)
Q Consensus 27 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~ 95 (305)
....-+..+|||||+||.-++..+|..+|+ .||-|.-+-|=.|..-+-.+|-|=|+|.+.+.-.+||+.
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 455667789999999999999999999999 799999998877765677889999999999999999984
No 170
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.71 E-value=0.0087 Score=43.13 Aligned_cols=57 Identities=14% Similarity=0.297 Sum_probs=42.7
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhc
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMN 97 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~ 97 (305)
......+|+ .|..+...||.++|+.||.|. |..+.| .-|||...+.+.|..++..+.
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 334455555 999999999999999999965 666666 359999999999999998775
No 171
>KOG1996|consensus
Probab=96.68 E-value=0.002 Score=56.80 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=35.3
Q ss_pred eEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 204 ~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
..||+|+..++|.+|+--|||++|+||.+...|......
T Consensus 331 RiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ekf 369 (378)
T KOG1996|consen 331 RIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEKF 369 (378)
T ss_pred eeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHhh
Confidence 479999999999999999999999999999999766543
No 172
>KOG2202|consensus
Probab=96.67 E-value=0.0008 Score=58.32 Aligned_cols=64 Identities=19% Similarity=0.296 Sum_probs=52.4
Q ss_pred HHHHHHhc-cCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCC
Q psy3016 49 TLMWELFV-QSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS 113 (305)
Q Consensus 49 ~~L~~~F~-~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~ 113 (305)
++|...|+ +||+|++++|-.+. .-.-.|.+||.|...++|++|++.||+-.+.|+.|....+.-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 34444455 89999999875553 345678999999999999999999999999999999987654
No 173
>KOG4676|consensus
Probab=96.59 E-value=0.015 Score=53.30 Aligned_cols=79 Identities=13% Similarity=0.221 Sum_probs=57.5
Q ss_pred ccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCc
Q psy3016 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201 (305)
Q Consensus 122 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~ 201 (305)
..|.|.||.++.|.++++.+|.-.|+|..+..+ - | ..|..-...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrly------------------------------p-~-----~~d~~~pv~ 51 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLY------------------------------P-N-----VDDSKIPVI 51 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhcccccccccc------------------------------C-C-----CCCccCcce
Confidence 379999999999999999999999999876322 0 0 011111223
Q ss_pred cceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEe
Q psy3016 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237 (305)
Q Consensus 202 ~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a 237 (305)
.-.|||.|.+..++..|-. |.++.|-++.|.|-.+
T Consensus 52 sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 52 SRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred eeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 4579999999877776666 7888887787777654
No 174
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.40 E-value=0.015 Score=46.58 Aligned_cols=55 Identities=22% Similarity=0.367 Sum_probs=45.1
Q ss_pred HHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCC
Q psy3016 50 LMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS 113 (305)
Q Consensus 50 ~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~ 113 (305)
+|-+.|..||++.=++++.+. -+|+|.+.+.|.+|+. ++|..+.|+.|+|+.-.+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~~--------mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGDT--------MWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETTC--------EEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCCe--------EEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 677789999998888886643 6999999999999999 899999999999986543
No 175
>KOG0112|consensus
Probab=96.31 E-value=0.0042 Score=62.38 Aligned_cols=78 Identities=23% Similarity=0.297 Sum_probs=67.6
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCC--eeeE
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYG--KPIR 107 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g--~~l~ 107 (305)
.....+.+|+|+|..++....|...|..||.|..|.+-. ..-||||+|.+...|+.|++.+-|.-+.| +.++
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 344567899999999999999999999999999998843 33799999999999999999999988875 6788
Q ss_pred EeeCCC
Q psy3016 108 VNKASS 113 (305)
Q Consensus 108 v~~~~~ 113 (305)
|.++..
T Consensus 525 vdla~~ 530 (975)
T KOG0112|consen 525 VDLASP 530 (975)
T ss_pred cccccC
Confidence 887764
No 176
>KOG2416|consensus
Probab=95.92 E-value=0.012 Score=56.72 Aligned_cols=78 Identities=12% Similarity=0.150 Sum_probs=63.8
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhcc-CCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeC---Cee
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQ-SGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLY---GKP 105 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~---g~~ 105 (305)
....+..|+|.||-.-.|.-+|+.++.. .|.|.+. +| |+ -|..|||.|.+.++|.+.+.+|||..|. ++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 5566778999999999999999999994 5566666 33 32 5678999999999999999999999884 577
Q ss_pred eEEeeCCC
Q psy3016 106 IRVNKASS 113 (305)
Q Consensus 106 l~v~~~~~ 113 (305)
|.+.|...
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 88777653
No 177
>KOG1996|consensus
Probab=95.74 E-value=0.03 Score=49.56 Aligned_cols=65 Identities=22% Similarity=0.039 Sum_probs=52.3
Q ss_pred HHHHHHHhccCCCeEEEEEcccCCCCC-cceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 48 ETLMWELFVQSGPVVNVHMPKDRVTQT-HQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 48 e~~L~~~F~~~G~i~~i~~~~~~~~~~-~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
++++++-+++||.|..|.|......-. ..---||+|...+.|.+|+-.|||..|.||.+...+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 467888999999999998876642211 12346999999999999999999999999999887643
No 178
>KOG3152|consensus
Probab=95.68 E-value=0.0042 Score=53.88 Aligned_cols=80 Identities=10% Similarity=0.200 Sum_probs=57.6
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccC----
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRD---- 195 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d---- 195 (305)
....||+++||+......|+++|..||.|-.+ |+..-+......
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRv--------------------------------ylqpE~~s~~~~r~~~ 120 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRV--------------------------------YLQPEDDSKRAARKRK 120 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceE--------------------------------EecchhhHHHHHHhhc
Confidence 45689999999999999999999999999754 222211111000
Q ss_pred -CCCCCccceEEEEeCChHHHHHHHHHhcCeeecCee
Q psy3016 196 -PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRP 231 (305)
Q Consensus 196 -~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~ 231 (305)
..++....-|.|+|.+...|......|||..|+|+.
T Consensus 121 ~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 121 GGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred CCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 011111222789999999999999999999998874
No 179
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.68 E-value=0.12 Score=39.66 Aligned_cols=68 Identities=10% Similarity=0.047 Sum_probs=50.4
Q ss_pred CceEEEcCCCccccHHHHHHHhccCC-CeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCC
Q psy3016 34 DATIYVGGLDDKVSETLMWELFVQSG-PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYG 103 (305)
Q Consensus 34 ~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g 103 (305)
...+.+...|..++.++|..+.+.+- .|..++|+++. ..++=-+++.|.+.++|....+.+||..++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34455555556666677777766654 67789999875 2344568999999999999999999987763
No 180
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.30 E-value=0.06 Score=40.62 Aligned_cols=79 Identities=15% Similarity=0.277 Sum_probs=51.1
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC----
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP---- 196 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~---- 196 (305)
...|.|-+.|.. ....|.+.|+.||.|.+...+ ..+.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~--------------------------------------~~~~~~~~ 46 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEV--------------------------------------LRSSSGIN 46 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGG--------------------------------------G-------
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecc--------------------------------------cccccccc
Confidence 355788888887 455678889999999764111 1110
Q ss_pred --CCCCccceEEEEeCChHHHHHHHHHhcCeeecCeee-EEEEeee
Q psy3016 197 --DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPI-SVSYAFK 239 (305)
Q Consensus 197 --~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l-~v~~a~~ 239 (305)
..-...+...|+|++..+|.+||. -||..+.|..+ -|.+++.
T Consensus 47 ~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mvGV~~~~~ 91 (100)
T PF05172_consen 47 PYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMVGVKPCDP 91 (100)
T ss_dssp ---E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEEEEEE-HH
T ss_pred cccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEEEEEEcHH
Confidence 001245678999999999999999 79999988655 4777743
No 181
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.26 E-value=0.031 Score=46.81 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=46.9
Q ss_pred CCCceEEEcCCCccccHHHHHHHhcc-CCCe---EEEEEcccC--CCCCcceEEEEEEcCHHHHHHHHHHhcCceeCC
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQ-SGPV---VNVHMPKDR--VTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYG 103 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i---~~i~~~~~~--~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g 103 (305)
.....|-|.+||+.+|++++++.++. ++.- ..+.-.... .......-|||.|.+.+++...+..++|..+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 34558999999999999999998887 7655 333311111 111233569999999999999999999987754
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.22 E-value=0.048 Score=43.76 Aligned_cols=37 Identities=8% Similarity=0.183 Sum_probs=30.1
Q ss_pred eEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 204 ~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
.-+|.|.+-++|.+|+. ++|.+++|+.|+|+...+.=
T Consensus 72 ~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 72 TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-----
T ss_pred eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccH
Confidence 46999999999999999 99999999999999876553
No 183
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=94.81 E-value=0.039 Score=36.46 Aligned_cols=51 Identities=20% Similarity=0.475 Sum_probs=36.9
Q ss_pred cccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCcc
Q psy3016 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSK 202 (305)
Q Consensus 123 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~ 202 (305)
.|-|.+.+....+ .+...|..||+|... -. ....
T Consensus 3 wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~-----------------------------------------~~----~~~~ 36 (53)
T PF14605_consen 3 WISVSGFPPDLAE-EVLEHFASFGEIVDI-----------------------------------------YV----PEST 36 (53)
T ss_pred EEEEEeECchHHH-HHHHHHHhcCCEEEE-----------------------------------------Ec----CCCC
Confidence 4666777766554 455588889999853 11 1346
Q ss_pred ceEEEEeCChHHHHHHH
Q psy3016 203 GFAFINYASFEASDASI 219 (305)
Q Consensus 203 g~afV~f~~~~~A~~Al 219 (305)
...||+|.+..+|++|+
T Consensus 37 ~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 37 NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEECCHHHHHhhC
Confidence 68999999999999985
No 184
>KOG2193|consensus
Probab=94.66 E-value=0.025 Score=52.47 Aligned_cols=77 Identities=22% Similarity=0.368 Sum_probs=59.9
Q ss_pred ccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCc
Q psy3016 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201 (305)
Q Consensus 122 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~ 201 (305)
+.+|++||.+.++-.++..+|... .+- .....-..
T Consensus 2 nklyignL~p~~~psdl~svfg~a-k~~--------------------------------------------~~g~fl~k 36 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA-KIP--------------------------------------------GSGQFLVK 36 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc-cCC--------------------------------------------CCcceeee
Confidence 368999999999999999999763 111 11111123
Q ss_pred cceEEEEeCChHHHHHHHHHhcCe-eecCeeeEEEEeeecCCc
Q psy3016 202 KGFAFINYASFEASDASIDAMHGQ-YLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 202 ~g~afV~f~~~~~A~~Al~~l~~~-~~~g~~l~v~~a~~~~~~ 243 (305)
.||+||.+.+...|.+|++.++|. ++.|+++.+.++-.+..+
T Consensus 37 ~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr 79 (584)
T KOG2193|consen 37 SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR 79 (584)
T ss_pred cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH
Confidence 689999999999999999999997 579999999987665543
No 185
>KOG0115|consensus
Probab=94.63 E-value=0.034 Score=48.42 Aligned_cols=75 Identities=24% Similarity=0.304 Sum_probs=60.6
Q ss_pred ceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCc----eeCCeeeEEee
Q psy3016 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMI----KLYGKPIRVNK 110 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~----~~~g~~l~v~~ 110 (305)
..|+|.||...++.+.|.+-|+.||+|..-.++.|- .++..+-++|.|...-.|.+|.+.++.- ...++...|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 579999999999999999999999999987776663 5777888999999999999999877432 33345555543
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.62 E-value=0.15 Score=34.75 Aligned_cols=54 Identities=19% Similarity=0.237 Sum_probs=44.4
Q ss_pred ceEEEcCCCccccHHHHHHHhccC---CCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHh
Q psy3016 35 ATIYVGGLDDKVSETLMWELFVQS---GPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L~~~F~~~---G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l 96 (305)
..|+|.++.. ++.++|+.+|..| .....|..+-|. -|=|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4789999854 7889999999998 135688888885 3789999999999999764
No 187
>KOG2068|consensus
Probab=94.45 E-value=0.02 Score=51.75 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=60.4
Q ss_pred ceEEEcCCCccccHHHHH---HHhccCCCeEEEEEcccCC--CCCcc-eEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 35 ATIYVGGLDDKVSETLMW---ELFVQSGPVVNVHMPKDRV--TQTHQ-GYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L~---~~F~~~G~i~~i~~~~~~~--~~~~~-g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
.-+||-+|+..+..+++. +.|..||.|..|.+-.+.. .+..- --+||+|...++|..||...+|..+.|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 357888998876655543 5788999999999877652 11111 12899999999999999999999999999777
Q ss_pred eeCCC
Q psy3016 109 NKASS 113 (305)
Q Consensus 109 ~~~~~ 113 (305)
.+...
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 66554
No 188
>KOG1855|consensus
Probab=94.27 E-value=0.12 Score=48.23 Aligned_cols=77 Identities=19% Similarity=0.262 Sum_probs=53.0
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC--
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD-- 197 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~-- 197 (305)
..++|.+.|||.+-.-+-|.++|+.+|.|..++.. .. +.++..+..-+.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIc--------------kP---------------gaip~d~r~~~~~~ 280 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRIC--------------KP---------------GAIPEDVRGFPKKY 280 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeec--------------CC---------------CCCCcccccCCccc
Confidence 57899999999998889999999999999875211 10 001111111100
Q ss_pred -CCCccceEEEEeCChHHHHHHHHHhcCe
Q psy3016 198 -TGNSKGFAFINYASFEASDASIDAMHGQ 225 (305)
Q Consensus 198 -~~~~~g~afV~f~~~~~A~~Al~~l~~~ 225 (305)
--..+-+|+|+|++.+.|.+|.+.|+..
T Consensus 281 ~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 281 FELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 0113567999999999999999988543
No 189
>KOG2591|consensus
Probab=93.99 E-value=0.073 Score=51.12 Aligned_cols=70 Identities=19% Similarity=0.311 Sum_probs=55.6
Q ss_pred CCceEEEcCCCccccHHHHHHHhcc--CCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcC--ceeCCeeeEE
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQ--SGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNM--IKLYGKPIRV 108 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~--~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g--~~~~g~~l~v 108 (305)
.-|.|.+..||..+-.++++-||.. +-.+.+|.+-.+. + =||+|++..||+.|.+.|.. ..|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------n-WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------N-WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------c-eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3467889999999999999999975 6688889885442 3 38999999999999987763 4667776655
Q ss_pred e
Q psy3016 109 N 109 (305)
Q Consensus 109 ~ 109 (305)
+
T Consensus 247 R 247 (684)
T KOG2591|consen 247 R 247 (684)
T ss_pred h
Confidence 4
No 190
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.80 E-value=0.2 Score=39.93 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=53.4
Q ss_pred CceEEEcCCCccc----cHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 34 DATIYVGGLDDKV----SETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 34 ~~~l~V~nLp~~~----te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
-.||.|.=|..++ +...+...++.||+|.++.+. | +.-|.|.|.+...|=+|+.+++. ...|..+.+.
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 4577776665554 334455667889999999872 2 25699999999999999998765 6678888888
Q ss_pred eCC
Q psy3016 110 KAS 112 (305)
Q Consensus 110 ~~~ 112 (305)
|-.
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 754
No 191
>KOG2253|consensus
Probab=93.78 E-value=0.041 Score=53.80 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=79.8
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
......+|||||+...+.++-++.+...+|.|.+++... |||+.|..+..+..|+..++...++|..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 344567999999999999999999999999999887633 89999999999999999998888888877776
Q ss_pred eCCCccccc-----------------cccccccccCCCchhcHHHHHHHHhhcC
Q psy3016 110 KASSHQKNL-----------------DVGANIFIGNLDPEVDEKLLYDTFSAFG 146 (305)
Q Consensus 110 ~~~~~~~~~-----------------~~~~~l~v~nl~~~~t~~~l~~~f~~~g 146 (305)
.-.....+. ...+..+|.+++..+.+......+.-.+
T Consensus 107 ~d~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~ 160 (668)
T KOG2253|consen 107 VDEQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISS 160 (668)
T ss_pred chhhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccc
Confidence 422110000 0124466777777766666655554433
No 192
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.64 E-value=0.2 Score=39.93 Aligned_cols=37 Identities=8% Similarity=0.129 Sum_probs=31.8
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEee
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 238 (305)
++-.|.|.|.+..+|-+|+.+++. ...|.-+.++|..
T Consensus 124 GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 124 GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 355799999999999999999987 6788888999864
No 193
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.48 E-value=0.19 Score=42.32 Aligned_cols=61 Identities=23% Similarity=0.188 Sum_probs=45.8
Q ss_pred cHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhc--CceeCCeeeEEeeCCC
Q psy3016 47 SETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMN--MIKLYGKPIRVNKASS 113 (305)
Q Consensus 47 te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~--g~~~~g~~l~v~~~~~ 113 (305)
..+.|+++|..|+.+..+...+.- +-..|.|.+.++|.+|...|+ +..+.|..+++.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 347899999999998888776643 558999999999999999999 8999999999988743
No 194
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.20 E-value=0.55 Score=32.51 Aligned_cols=55 Identities=13% Similarity=0.203 Sum_probs=43.6
Q ss_pred cccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 45 KVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 45 ~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
.++-.+++..+..|+- ..|.. ++ .|| ||.|.+..+|++|....+|..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677899999999964 44443 32 266 99999999999999999999988877765
No 195
>KOG4285|consensus
Probab=92.72 E-value=0.75 Score=41.18 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=57.5
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCe-eeEEeeC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGK-PIRVNKA 111 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~-~l~v~~~ 111 (305)
....|-|-++|+.-+ ..|.+.|++||+|.+.... .+-.+-+|.|.+.-+|.+|+.. ||..|.|. .|-|..+
T Consensus 196 ~D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 196 ADTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPC 267 (350)
T ss_pred ccceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeec
Confidence 367788889988644 5677899999999877653 2336889999999999999994 88888874 5566665
Q ss_pred CCcc
Q psy3016 112 SSHQ 115 (305)
Q Consensus 112 ~~~~ 115 (305)
..+.
T Consensus 268 tDks 271 (350)
T KOG4285|consen 268 TDKS 271 (350)
T ss_pred CCHH
Confidence 5544
No 196
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.53 E-value=0.23 Score=35.93 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=40.7
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
....||+ .|..+-..+|.++|++||.|... ++-
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~Vs----------------------------------------Wi~------ 41 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVS----------------------------------------WIN------ 41 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEE----------------------------------------EEC------
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEE----------------------------------------EEc------
Confidence 3445555 89999999999999999998642 222
Q ss_pred ccceEEEEeCChHHHHHHHHHhcC
Q psy3016 201 SKGFAFINYASFEASDASIDAMHG 224 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~ 224 (305)
...|||...+.+.|..|+..+.-
T Consensus 42 -dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 42 -DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp -TTEEEEEECCCHHHHHHHHHHTT
T ss_pred -CCcEEEEeecHHHHHHHHHHhcc
Confidence 23699999999999999998864
No 197
>KOG0804|consensus
Probab=91.09 E-value=0.64 Score=43.82 Aligned_cols=68 Identities=10% Similarity=0.150 Sum_probs=57.6
Q ss_pred CceEEEcCCCccccHHHHHHHhccCC-CeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCC
Q psy3016 34 DATIYVGGLDDKVSETLMWELFVQSG-PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYG 103 (305)
Q Consensus 34 ~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g 103 (305)
+..|+|-.+|..+|-.||-.|+..+- .|.+|++++|.. .++=..+|.|.+.++|....+.+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 77899999999999999999988655 688999999642 233448999999999999999999987763
No 198
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.78 E-value=0.35 Score=40.46 Aligned_cols=86 Identities=19% Similarity=0.281 Sum_probs=48.4
Q ss_pred cccccccCCCchhcHHHHHHHHhh-cCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSA-FGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~-~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
...|.|.+||+.+|++++.+.+.. ++.-.. |-.+. +..+..... -
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~-------------w~y~~-----------------g~~~~~~~~----~ 52 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWD-------------WYYFQ-----------------GKYGKKSFK----P 52 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE----------------EEEE-----------------EEES-SSST----T
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccc-------------eEEEe-----------------cCCCCccCC----C
Confidence 457999999999999999987665 443311 00000 000001111 1
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecC-----eeeEEEEeeec
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCN-----RPISVSYAFKK 240 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g-----~~l~v~~a~~~ 240 (305)
.....|||.|.+.++...-...++|..|-+ ....|.||--.
T Consensus 53 ~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~~~~~VE~Apyq 98 (176)
T PF03467_consen 53 PTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNEYPAVVEFAPYQ 98 (176)
T ss_dssp S--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-EEEEEEEE-SS-
T ss_pred CcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCCcceeEEEcchh
Confidence 124469999999999999999999987722 34567776543
No 199
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.74 E-value=1.3 Score=31.23 Aligned_cols=59 Identities=20% Similarity=0.337 Sum_probs=36.7
Q ss_pred ccccHHHHHHHhccCC-----CeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 44 DKVSETLMWELFVQSG-----PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 44 ~~~te~~L~~~F~~~G-----~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
..++..+|-.++...+ .|-.|++.. .|+||+-.. +.|..+++.|++..+.|+.+.|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3578888988888764 566788733 578998765 4788999999999999999999864
No 200
>KOG2135|consensus
Probab=89.55 E-value=0.22 Score=47.12 Aligned_cols=82 Identities=12% Similarity=0.054 Sum_probs=63.9
Q ss_pred CCCcCCCCceEEEcCCCcccc-HHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCee
Q psy3016 27 GGESGDGDATIYVGGLDDKVS-ETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKP 105 (305)
Q Consensus 27 ~~~~~~~~~~l~V~nLp~~~t-e~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~ 105 (305)
++.-....+.|-+.-.+.... -.+|..-|..||.|..|.+-.. --.|.|+|.+..+|-.|.. ..+..|++|-
T Consensus 365 ~g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~ 437 (526)
T KOG2135|consen 365 PGHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRF 437 (526)
T ss_pred CcchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCce
Confidence 333444566777777777654 4789999999999999998433 2468999999999977776 5899999999
Q ss_pred eEEeeCCCcc
Q psy3016 106 IRVNKASSHQ 115 (305)
Q Consensus 106 l~v~~~~~~~ 115 (305)
|+|-|..+..
T Consensus 438 iKl~whnps~ 447 (526)
T KOG2135|consen 438 IKLFWHNPSP 447 (526)
T ss_pred eEEEEecCCc
Confidence 9999987643
No 201
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=89.40 E-value=0.43 Score=35.04 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=44.9
Q ss_pred EEEEEcCHHHHHHHHHHhc-CceeCCeeeEEeeCC--Ccc-c-----cccccccccccCCCchhcHHHHHHHHh
Q psy3016 79 GFIEFMGEEDADYAIKIMN-MIKLYGKPIRVNKAS--SHQ-K-----NLDVGANIFIGNLDPEVDEKLLYDTFS 143 (305)
Q Consensus 79 afV~f~~~e~A~~Ai~~l~-g~~~~g~~l~v~~~~--~~~-~-----~~~~~~~l~v~nl~~~~t~~~l~~~f~ 143 (305)
|+|+|.+..-|++-++.-. ...+.+..+.|...- ... . ..-..++|-|.|||..+.+++|.+.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999988422 245556665554322 111 1 112357899999999999999998875
No 202
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=88.83 E-value=1.1 Score=30.66 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=19.6
Q ss_pred ccccccCCCchhcHHHHHHHHhhc
Q psy3016 122 ANIFIGNLDPEVDEKLLYDTFSAF 145 (305)
Q Consensus 122 ~~l~v~nl~~~~t~~~l~~~f~~~ 145 (305)
..|+|.+++ +++.++|+..|..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y 28 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEY 28 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHh
Confidence 468999986 48889999999998
No 203
>KOG4574|consensus
Probab=88.02 E-value=0.47 Score=48.01 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=62.7
Q ss_pred ccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCc
Q psy3016 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201 (305)
Q Consensus 122 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~ 201 (305)
.+.++.|....++..-|..+|..||.|...| ..+|
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~w---------------------------------------tlr~------ 333 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAW---------------------------------------TLRD------ 333 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhhe---------------------------------------eccc------
Confidence 3455677777889999999999999998753 1233
Q ss_pred cceEEEEeCChHHHHHHHHHhcCeee--cCeeeEEEEeeecCCc
Q psy3016 202 KGFAFINYASFEASDASIDAMHGQYL--CNRPISVSYAFKKDSK 243 (305)
Q Consensus 202 ~g~afV~f~~~~~A~~Al~~l~~~~~--~g~~l~v~~a~~~~~~ 243 (305)
..-|.|+|.+.+.|..|+.+++|+++ -|-+.+|.|++.....
T Consensus 334 ~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~ 377 (1007)
T KOG4574|consen 334 LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMY 377 (1007)
T ss_pred ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccccc
Confidence 45689999999999999999999986 7888999999876653
No 204
>KOG2591|consensus
Probab=85.26 E-value=11 Score=36.93 Aligned_cols=94 Identities=7% Similarity=0.080 Sum_probs=56.8
Q ss_pred HHHHHHhcCceeCCeeeEEeeCCCccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeec
Q psy3016 90 DYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNK 169 (305)
Q Consensus 90 ~~Ai~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~ 169 (305)
..++++.-+..++.+-.+|+... ..|.|.+.-|+..+-.|+++.+|+.-..-..+
T Consensus 151 ~Evlresp~VqvDekgekVrp~~-------kRcIvilREIpettp~e~Vk~lf~~encPk~i------------------ 205 (684)
T KOG2591|consen 151 VEVLRESPNVQVDEKGEKVRPNH-------KRCIVILREIPETTPIEVVKALFKGENCPKVI------------------ 205 (684)
T ss_pred HHHHhcCCCceeccCccccccCc-------ceeEEEEeecCCCChHHHHHHHhccCCCCCce------------------
Confidence 33444444555555555554322 24667789999999999999999863322211
Q ss_pred CccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcC--eeecCeeeEE
Q psy3016 170 ASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHG--QYLCNRPISV 234 (305)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~--~~~~g~~l~v 234 (305)
.+ +.+... -=||.|++..||..|.+.|.. .+|-|+.|..
T Consensus 206 ---------------------sc----efa~N~-nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 206 ---------------------SC----EFAHND-NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ---------------------ee----eeeecC-ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 00 111111 239999999999999877643 2455555443
No 205
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=85.26 E-value=1.4 Score=37.04 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=29.9
Q ss_pred cceEEEEeCChHHHHHHHHHhc--CeeecCeeeEEEEeeec
Q psy3016 202 KGFAFINYASFEASDASIDAMH--GQYLCNRPISVSYAFKK 240 (305)
Q Consensus 202 ~g~afV~f~~~~~A~~Al~~l~--~~~~~g~~l~v~~a~~~ 240 (305)
-+-..|.|.+.++|..|...|+ +..+.|..+++-|+...
T Consensus 31 FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 31 FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4468999999999999999999 99999999999998443
No 206
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=84.73 E-value=1.6 Score=35.05 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=70.0
Q ss_pred eEEEcCCC--ccccHHHHHHHhc----cCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 36 TIYVGGLD--DKVSETLMWELFV----QSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 36 ~l~V~nLp--~~~te~~L~~~F~----~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
...||.+. ...+-..|.+.+. ..|.+.-..+ ..++..++|.+.+++.++++. ....+.|..+.+.
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l--------~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~ 87 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL--------GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQ 87 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe--------CCCeEEEEEEeccceeEEEec-ccccccccchhhh
Confidence 44555553 2344555555444 3444443333 237899999999999999883 4556777778777
Q ss_pred eCCCcccccc-----ccccccccCCCch-hcHHHHHHHHhhcCcccch
Q psy3016 110 KASSHQKNLD-----VGANIFIGNLDPE-VDEKLLYDTFSAFGVILQT 151 (305)
Q Consensus 110 ~~~~~~~~~~-----~~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~~~ 151 (305)
.-.+...... ..-=|.|.+||.. .+++-+..+.+..|.+..+
T Consensus 88 ~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~v 135 (153)
T PF14111_consen 88 RWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEV 135 (153)
T ss_pred hhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEE
Confidence 6553322111 1233778999987 7888899999999999865
No 207
>KOG4285|consensus
Probab=84.23 E-value=3 Score=37.50 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=34.9
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeE-EEEeeecCCcC
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPIS-VSYAFKKDSKG 244 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~-v~~a~~~~~~~ 244 (305)
..-.+-+|+|.+..+|.+||. -||+.|+|..+. |.-|.++....
T Consensus 230 ~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDksvi~ 274 (350)
T KOG4285|consen 230 SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDKSVIN 274 (350)
T ss_pred CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCHHHhc
Confidence 345688999999999999999 689999887654 88777776543
No 208
>KOG4574|consensus
Probab=83.20 E-value=0.72 Score=46.75 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=56.6
Q ss_pred EEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeC--CeeeEEeeCCC
Q psy3016 38 YVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLY--GKPIRVNKASS 113 (305)
Q Consensus 38 ~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~--g~~l~v~~~~~ 113 (305)
.+.|.+-..+-.-|..+|+.||.|.+....++- ..|.|+|.+.+.|..|.++|+|+++. |...+|..++.
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 344444567778899999999999999887764 67999999999999999999997654 77777777654
No 209
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=82.74 E-value=5.1 Score=27.71 Aligned_cols=30 Identities=10% Similarity=0.257 Sum_probs=26.6
Q ss_pred EEEEeCChHHHHHHHHHhcCeeecCeeeEE
Q psy3016 205 AFINYASFEASDASIDAMHGQYLCNRPISV 234 (305)
Q Consensus 205 afV~f~~~~~A~~Al~~l~~~~~~g~~l~v 234 (305)
-||-|.+.++|+++....+|+.+.+..+.+
T Consensus 36 fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 36 FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 499999999999999999999988777654
No 210
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=80.93 E-value=2.4 Score=29.82 Aligned_cols=35 Identities=20% Similarity=0.506 Sum_probs=21.6
Q ss_pred cceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEe
Q psy3016 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237 (305)
Q Consensus 202 ~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a 237 (305)
..|+||+-.. +.|..++.+|++..+.|+.|+|+.|
T Consensus 40 ~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 40 DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4488999964 4899999999999999999999864
No 211
>KOG2318|consensus
Probab=78.05 E-value=2.3 Score=41.47 Aligned_cols=119 Identities=19% Similarity=0.206 Sum_probs=63.2
Q ss_pred ccccccccCCCch-hcHHHHHHHHhhc----Ccccchhhh--------hhhhhhcCcceeeecCccccccCCCcceeEec
Q psy3016 120 VGANIFIGNLDPE-VDEKLLYDTFSAF----GVILQTPKI--------MNMIKLYGKPIRVNKASSHQKNLDVGANIFIG 186 (305)
Q Consensus 120 ~~~~l~v~nl~~~-~t~~~l~~~f~~~----g~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (305)
..++|-|.|+++. +..++|.-+|..| |.|.+|..+ |.....-|.++.+................-..
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 3578999999986 8889998888765 466665433 11122222211111111100000000000000
Q ss_pred cCCCC-cccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeee
Q psy3016 187 NLDPE-IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239 (305)
Q Consensus 187 ~l~~~-i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 239 (305)
++.. +..........-||.|+|.++++|.+.-..++|.+|......+.+-..
T Consensus 253 -~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 253 -VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred -HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 0110 111112233456799999999999999999999999665555444433
No 212
>KOG2068|consensus
Probab=76.90 E-value=0.88 Score=41.36 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=32.6
Q ss_pred EEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 205 AFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 205 afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
+||.|+..++|..||...+|...+|+.|+..+...+
T Consensus 128 ~yITy~~~eda~rci~~v~g~~~dg~~lka~~gttk 163 (327)
T KOG2068|consen 128 VYITYEEEEDADRCIDDVDGFVDDGRALKASLGTTK 163 (327)
T ss_pred ccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCCc
Confidence 799999999999999999999999999888886644
No 213
>KOG4410|consensus
Probab=72.33 E-value=6 Score=35.29 Aligned_cols=56 Identities=13% Similarity=0.185 Sum_probs=39.7
Q ss_pred CCCcCCCCceEEEcCCCccccHHHHHHHhccCCCe-EEEEEcccCCCCCcceEEEEEEcCHHH
Q psy3016 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPV-VNVHMPKDRVTQTHQGYGFIEFMGEED 88 (305)
Q Consensus 27 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~i~~~~~~~~~~~~g~afV~f~~~e~ 88 (305)
+++..--..-|+++||+.++.-.||+.-+.+.|.+ .++.+. -..|-||++|.+...
T Consensus 323 ~g~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 323 SGVEAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRKG 379 (396)
T ss_pred CcccCccccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCccC
Confidence 33344444569999999999999999998887743 445441 145779999987543
No 214
>KOG2135|consensus
Probab=71.28 E-value=3.1 Score=39.58 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=32.4
Q ss_pred ceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 203 g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
-.|.|+|.+..+|-.|-. .++..|+++.|+|.|-++..
T Consensus 410 ~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 410 LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 358999999999977776 78999999999999987643
No 215
>KOG2318|consensus
Probab=70.29 E-value=18 Score=35.60 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=61.4
Q ss_pred CCCCceEEEcCCCc-cccHHHHHHHhccC----CCeEEEEEcccCCC----------CC---------------------
Q psy3016 31 GDGDATIYVGGLDD-KVSETLMWELFVQS----GPVVNVHMPKDRVT----------QT--------------------- 74 (305)
Q Consensus 31 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~----G~i~~i~~~~~~~~----------~~--------------------- 74 (305)
....++|-|-|+.. .+...+|.-+|+.| |.|.+|.|.....+ |.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 55678999999986 58888998887764 48999988642211 11
Q ss_pred ----------------cceEEEEEEcCHHHHHHHHHHhcCceeC--CeeeEEeeC
Q psy3016 75 ----------------HQGYGFIEFMGEEDADYAIKIMNMIKLY--GKPIRVNKA 111 (305)
Q Consensus 75 ----------------~~g~afV~f~~~e~A~~Ai~~l~g~~~~--g~~l~v~~~ 111 (305)
..=||.|+|.+.+.|.+..+.++|..+. +..+.+++.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1137999999999999999999999886 566666654
No 216
>KOG2253|consensus
Probab=69.88 E-value=4 Score=40.45 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=64.3
Q ss_pred CCCccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCC
Q psy3016 111 ASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 190 (305)
Q Consensus 111 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 190 (305)
+.+.........++||+|+...+..+-+..++...|.|-.+.
T Consensus 30 ~qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~k-------------------------------------- 71 (668)
T KOG2253|consen 30 IQPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWK-------------------------------------- 71 (668)
T ss_pred CcccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhh--------------------------------------
Confidence 333333444567899999999999999999999999998662
Q ss_pred CcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEe
Q psy3016 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237 (305)
Q Consensus 191 ~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a 237 (305)
++ + |+|..|....-+..|+..++-..++|..+.+.--
T Consensus 72 ---r~------~-fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 72 ---RD------K-FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred ---hh------h-hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 12 1 8999999999999999999999999988877653
No 217
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=69.13 E-value=12 Score=33.64 Aligned_cols=83 Identities=12% Similarity=0.177 Sum_probs=61.6
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCC-------CCCcceEEEEEEcCHHHHHHHH----HHhcC
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRV-------TQTHQGYGFIEFMGEEDADYAI----KIMNM 98 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~-------~~~~~g~afV~f~~~e~A~~Ai----~~l~g 98 (305)
..-..|.|.+.|+..+++-..+-..|.+||+|++|.++.+.. .-....-..+.|-+.+.+.... +.|+.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 444567899999999999999999999999999999998751 1123356799999999877554 33332
Q ss_pred --ceeCCeeeEEeeCC
Q psy3016 99 --IKLYGKPIRVNKAS 112 (305)
Q Consensus 99 --~~~~g~~l~v~~~~ 112 (305)
..+....|.+.+..
T Consensus 91 fK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHhcCCcceeEEEEE
Confidence 45666777777654
No 218
>KOG4365|consensus
Probab=66.91 E-value=1.1 Score=42.25 Aligned_cols=78 Identities=4% Similarity=-0.184 Sum_probs=63.3
Q ss_pred CceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 34 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
+.+-|+..++....++++.-+|+.||.|..+.+.+....+...-.+||+-.+ ++|..||..+-...++|.++++..+.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 4567888999999999999999999999999988877677777889998765 45677887777777788777776553
No 219
>KOG4019|consensus
Probab=62.83 E-value=20 Score=29.95 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=34.8
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecCe-eeEEEEeeecCC
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCNR-PISVSYAFKKDS 242 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g~-~l~v~~a~~~~~ 242 (305)
+.+..-|.|.+.+.|..|...++++.|.|+ .++.=|+.....
T Consensus 50 sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~~ 92 (193)
T KOG4019|consen 50 SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGHP 92 (193)
T ss_pred hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCCc
Confidence 455677899999999999999999999988 778877755544
No 220
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=61.63 E-value=28 Score=26.63 Aligned_cols=35 Identities=20% Similarity=0.418 Sum_probs=27.9
Q ss_pred CcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeee
Q psy3016 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYL 227 (305)
Q Consensus 191 ~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~ 227 (305)
+|.+|.. ..+--+.++|.+.++|..-...+||+.|
T Consensus 45 riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 45 RIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred EEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 4566632 3455689999999999999999999987
No 221
>KOG1923|consensus
Probab=56.21 E-value=52 Score=33.63 Aligned_cols=10 Identities=0% Similarity=0.039 Sum_probs=4.2
Q ss_pred CHHHHHHHHH
Q psy3016 85 GEEDADYAIK 94 (305)
Q Consensus 85 ~~e~A~~Ai~ 94 (305)
+.+--.+++.
T Consensus 87 n~df~~a~lQ 96 (830)
T KOG1923|consen 87 NADFSAAKLQ 96 (830)
T ss_pred ChHHHHHHHH
Confidence 3444334444
No 222
>KOG4590|consensus
Probab=55.44 E-value=38 Score=32.20 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=13.5
Q ss_pred EEeCChHHHHH-------HHHHhcCee
Q psy3016 207 INYASFEASDA-------SIDAMHGQY 226 (305)
Q Consensus 207 V~f~~~~~A~~-------Al~~l~~~~ 226 (305)
+.|.+.+||.. |++.|++..
T Consensus 78 LnFqs~~DA~~Fa~~~~~A~e~l~~g~ 104 (409)
T KOG4590|consen 78 LTFQSEQDARAFARGVPVAIEALSGGT 104 (409)
T ss_pred ccccChhhhhhhhhhhhhhhhhhccCC
Confidence 47888888875 556666543
No 223
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=55.19 E-value=26 Score=31.95 Aligned_cols=57 Identities=19% Similarity=0.325 Sum_probs=38.0
Q ss_pred EEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCCccccccccccccccCCCchhcHHHHHHHHhh
Q psy3016 79 GFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSA 144 (305)
Q Consensus 79 afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~ 144 (305)
|||+|.+..+|..|.+.+.... ++.+.++.+-.. +.|.-.||..+..+..++.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP-------~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP-------DDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc-------ccccccccCCChHHHHHHHHHHH
Confidence 7999999999999999654432 345566555433 23666777666666666655543
No 224
>KOG2891|consensus
Probab=52.82 E-value=14 Score=32.96 Aligned_cols=39 Identities=31% Similarity=0.457 Sum_probs=31.2
Q ss_pred CcCCCCceEEEcCCCccc------------cHHHHHHHhccCCCeEEEEEc
Q psy3016 29 ESGDGDATIYVGGLDDKV------------SETLMWELFVQSGPVVNVHMP 67 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~------------te~~L~~~F~~~G~i~~i~~~ 67 (305)
...+...||++.+||-.| +++.|+..|+.||.|..+.|.
T Consensus 144 kpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 144 KPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 344556799999999643 578899999999999998874
No 225
>KOG0804|consensus
Probab=48.02 E-value=27 Score=33.28 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=53.0
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
...|+|-.+|-.+|.-+|..++..+-.... +++|++|.. .
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~--------------------------------------~irivRd~~--p 113 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQIS--------------------------------------DIRIVRDGM--P 113 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhh--------------------------------------eeEEeecCC--C
Confidence 678999999999999999999986543322 336777643 2
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeee
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYL 227 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~ 227 (305)
.+--++|+|.+.++|..-.+.+||..|
T Consensus 114 nrymvLIkFr~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 114 NRYMVLIKFRDQADADTFYEEFNGKQF 140 (493)
T ss_pred ceEEEEEEeccchhHHHHHHHcCCCcC
Confidence 344579999999999999999999987
No 226
>KOG4410|consensus
Probab=45.80 E-value=30 Score=31.04 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=23.2
Q ss_pred ccccccCCCchhcHHHHHHHHhhcCcc
Q psy3016 122 ANIFIGNLDPEVDEKLLYDTFSAFGVI 148 (305)
Q Consensus 122 ~~l~v~nl~~~~t~~~l~~~f~~~g~v 148 (305)
..||++||+.++-..+|+..+.+.+.+
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~ 357 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT 357 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC
Confidence 459999999999999999988876655
No 227
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=45.64 E-value=25 Score=27.18 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=23.4
Q ss_pred cHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHH
Q psy3016 47 SETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88 (305)
Q Consensus 47 te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~ 88 (305)
+.++|.+.|+.|..+. ++...+.. ...|++.|.|...-.
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWS 68 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChH
Confidence 5578999999998865 55555542 467999999965433
No 228
>KOG2295|consensus
Probab=45.56 E-value=3.2 Score=40.31 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=52.4
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLY 102 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~ 102 (305)
..++|||.|+++.++-.+|..++..+--+.++-+-....-..-..+++|+|...-.-.-|+.+||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 4578999999999999999999998876666655333222234467899998877777788888876543
No 229
>KOG4019|consensus
Probab=44.06 E-value=29 Score=29.03 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=53.5
Q ss_pred CCceEEEcCCCcccc-----HHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCe-ee
Q psy3016 33 GDATIYVGGLDDKVS-----ETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGK-PI 106 (305)
Q Consensus 33 ~~~~l~V~nLp~~~t-----e~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~-~l 106 (305)
-..++++.+|+..+- .....++|..|-+.....+.+ +.++--|-|.+.+.|..|.-.+++..+.|+ .+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 344677777776542 223445666666666666654 346778999999999999999999999988 67
Q ss_pred EEeeCCCc
Q psy3016 107 RVNKASSH 114 (305)
Q Consensus 107 ~v~~~~~~ 114 (305)
+.-.+...
T Consensus 83 k~yfaQ~~ 90 (193)
T KOG4019|consen 83 KLYFAQPG 90 (193)
T ss_pred EEEEccCC
Confidence 76665543
No 230
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=43.91 E-value=45 Score=22.72 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=17.0
Q ss_pred HHHHHHhccCCCeEEEEEccc
Q psy3016 49 TLMWELFVQSGPVVNVHMPKD 69 (305)
Q Consensus 49 ~~L~~~F~~~G~i~~i~~~~~ 69 (305)
.+||++|+..|+|.-+.+-..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 589999999999987766443
No 231
>KOG3671|consensus
Probab=42.15 E-value=47 Score=32.20 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=17.6
Q ss_pred eEEEEEEcCHHHHHHHHHHhcC
Q psy3016 77 GYGFIEFMGEEDADYAIKIMNM 98 (305)
Q Consensus 77 g~afV~f~~~e~A~~Ai~~l~g 98 (305)
+++=+.|.++++|++..+.+..
T Consensus 116 c~aGLnF~~E~EA~~F~k~V~~ 137 (569)
T KOG3671|consen 116 CQAGLNFASEEEAQKFRKKVQD 137 (569)
T ss_pred ceeeecccCHHHHHHHHHHHHH
Confidence 5677788999999998887654
No 232
>KOG3671|consensus
Probab=42.05 E-value=54 Score=31.82 Aligned_cols=15 Identities=20% Similarity=0.127 Sum_probs=7.1
Q ss_pred ccHHHHHHHhccCCC
Q psy3016 46 VSETLMWELFVQSGP 60 (305)
Q Consensus 46 ~te~~L~~~F~~~G~ 60 (305)
+|.+|=..+|...|.
T Consensus 21 Lt~~ene~lf~~lgk 35 (569)
T KOG3671|consen 21 LTSEENETLFKLLGK 35 (569)
T ss_pred cchhHHHHHHHHhcc
Confidence 344444445555444
No 233
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=40.92 E-value=16 Score=26.79 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.2
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhc
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFV 56 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~ 56 (305)
.-..++|-|.|||...++++|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 34577999999999999999998765
No 234
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=39.25 E-value=62 Score=22.36 Aligned_cols=62 Identities=23% Similarity=0.343 Sum_probs=43.8
Q ss_pred HHHHHHhccCC-CeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCC
Q psy3016 49 TLMWELFVQSG-PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS 113 (305)
Q Consensus 49 ~~L~~~F~~~G-~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~ 113 (305)
++|.+-|...| +|..+.-+..+.++.....-||+.....+... .++=..+.+..+.|++...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 56777888888 77788777777667777778888876655332 3344667788899987654
No 235
>KOG2675|consensus
Probab=39.01 E-value=31 Score=32.81 Aligned_cols=8 Identities=0% Similarity=0.331 Sum_probs=4.7
Q ss_pred ceEEEEeC
Q psy3016 203 GFAFINYA 210 (305)
Q Consensus 203 g~afV~f~ 210 (305)
.++.|.+.
T Consensus 146 algWVav~ 153 (480)
T KOG2675|consen 146 ALGWVAVK 153 (480)
T ss_pred cceeEecC
Confidence 45666665
No 236
>KOG4483|consensus
Probab=37.80 E-value=65 Score=30.36 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=46.0
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCC-eEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHH
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGP-VVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~ 95 (305)
=...|=|.++|...-.+||-..|+.|+. -..|+++-| ..||-.|.+...|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 4457889999999888899999999884 455677666 4799999999999999884
No 237
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=36.73 E-value=99 Score=22.42 Aligned_cols=56 Identities=11% Similarity=0.013 Sum_probs=41.5
Q ss_pred EEEcCCCccccHHHHHHHhcc-CC-CeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHH
Q psy3016 37 IYVGGLDDKVSETLMWELFVQ-SG-PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95 (305)
Q Consensus 37 l~V~nLp~~~te~~L~~~F~~-~G-~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~ 95 (305)
-|+-.++..++..++++.++. || .|.+|+.+.... ...=|||++...+.|...-..
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 444557889999999999997 66 778887766541 224599999998888776543
No 238
>KOG1295|consensus
Probab=36.52 E-value=51 Score=30.80 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=49.6
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCC-eEEEEEcccCC--CCCcceEEEEEEcCHHHHHHHHHHhcCceeC
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGP-VVNVHMPKDRV--TQTHQGYGFIEFMGEEDADYAIKIMNMIKLY 102 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~i~~~~~~~--~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~ 102 (305)
.....+.|-|.+||+..++.+|.+-...|-+ +....+..... .....+.|||.|...++.......++|..+.
T Consensus 3 ~~~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 3 KKEAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ccccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 3456678999999999999999887776542 22222221111 1123577999999999988777777776554
No 239
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=36.28 E-value=79 Score=23.05 Aligned_cols=46 Identities=26% Similarity=0.373 Sum_probs=30.9
Q ss_pred ceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEE
Q psy3016 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f 83 (305)
.-||||+++..+.|.-...+.+..+.-.-+-+..+. . ..||+|-++
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~--n-eqG~~~~t~ 71 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN--N-EQGFDFRTL 71 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC--C-CCCEEEEEe
Confidence 469999999999877666666555543434343332 2 679999887
No 240
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=34.65 E-value=93 Score=25.01 Aligned_cols=8 Identities=25% Similarity=0.584 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q psy3016 295 PPPSGLRA 302 (305)
Q Consensus 295 ppp~~~~~ 302 (305)
.|||+++|
T Consensus 144 spPppYpg 151 (155)
T PF10873_consen 144 SPPPPYPG 151 (155)
T ss_pred CCccCCCC
Confidence 34444544
No 241
>KOG4483|consensus
Probab=32.91 E-value=64 Score=30.43 Aligned_cols=66 Identities=17% Similarity=0.213 Sum_probs=47.9
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
-..|-|.+++...-.++|...|+.|+.--. ++++|-|
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgf--------------------------------------dIkWvDd----- 427 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGF--------------------------------------DIKWVDD----- 427 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCc--------------------------------------eeEEeec-----
Confidence 356888999999999999999999875432 2244444
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecCeee
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPI 232 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l 232 (305)
-.||.-|++...|..||.. ...|+.=|.|
T Consensus 428 --thalaVFss~~~AaeaLt~-kh~~lKiRpL 456 (528)
T KOG4483|consen 428 --THALAVFSSVNRAAEALTL-KHDWLKIRPL 456 (528)
T ss_pred --ceeEEeecchHHHHHHhhc-cCceEEeeeh
Confidence 2589999999999999984 4445544443
No 242
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=32.58 E-value=1.3e+02 Score=21.34 Aligned_cols=56 Identities=11% Similarity=-0.007 Sum_probs=40.9
Q ss_pred eEEEcCCCccccHHHHHHHhcc-CC-CeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHH
Q psy3016 36 TIYVGGLDDKVSETLMWELFVQ-SG-PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94 (305)
Q Consensus 36 ~l~V~nLp~~~te~~L~~~F~~-~G-~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~ 94 (305)
.-|+-.++..++..+|++.++. || .|.+|+.+..+. ..-=|||++...+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHH
Confidence 3455567889999999999987 66 677777766542 22459999988888776543
No 243
>KOG3424|consensus
Probab=32.24 E-value=98 Score=23.99 Aligned_cols=45 Identities=20% Similarity=0.174 Sum_probs=28.2
Q ss_pred cccHHHHHHHhccCC-----CeEEEEEcccCCCCCcceEEEEEEcCHHHHH
Q psy3016 45 KVSETLMWELFVQSG-----PVVNVHMPKDRVTQTHQGYGFIEFMGEEDAD 90 (305)
Q Consensus 45 ~~te~~L~~~F~~~G-----~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~ 90 (305)
.++.+||++-+++.- .|.-..+-..-.+|++.|||.| |++.|.|.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 577888888776532 2222233333356889999988 67766655
No 244
>KOG2236|consensus
Probab=31.02 E-value=73 Score=30.59 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=8.1
Q ss_pred EEEeCChHHHHHHHHHh
Q psy3016 206 FINYASFEASDASIDAM 222 (305)
Q Consensus 206 fV~f~~~~~A~~Al~~l 222 (305)
.++|.+.+ ++++.+.+
T Consensus 318 e~dfSDDE-kEaeak~~ 333 (483)
T KOG2236|consen 318 EQDFSDDE-KEAEAKQM 333 (483)
T ss_pred hhccchHH-HHHHHHHH
Confidence 57787653 33333334
No 245
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=28.87 E-value=57 Score=29.65 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=26.3
Q ss_pred EEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 205 AFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 205 afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
|||.|++..+|..|.+.+....- +.+.+..|-+.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCcc
Confidence 79999999999999997665443 445677765554
No 246
>KOG2391|consensus
Probab=27.51 E-value=1.3e+02 Score=27.91 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=5.2
Q ss_pred cceEEEEeCC
Q psy3016 202 KGFAFINYAS 211 (305)
Q Consensus 202 ~g~afV~f~~ 211 (305)
.-+|||.-.+
T Consensus 84 pP~c~VnPT~ 93 (365)
T KOG2391|consen 84 PPICYVNPTS 93 (365)
T ss_pred CCeEEecCCc
Confidence 3356665543
No 247
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=27.29 E-value=86 Score=21.68 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=22.0
Q ss_pred eEEEEEEcCHHHHHHHHHHhcCceeCCe
Q psy3016 77 GYGFIEFMGEEDADYAIKIMNMIKLYGK 104 (305)
Q Consensus 77 g~afV~f~~~e~A~~Ai~~l~g~~~~g~ 104 (305)
.+++|+|.+..+|.+|-+.|....+..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 4689999999999999888766544433
No 248
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=26.29 E-value=1.1e+02 Score=21.36 Aligned_cols=62 Identities=23% Similarity=0.310 Sum_probs=41.7
Q ss_pred HHHHHHhccCC-CeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCC
Q psy3016 49 TLMWELFVQSG-PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS 113 (305)
Q Consensus 49 ~~L~~~F~~~G-~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~ 113 (305)
.+|.+-|...| .+..+.-+....++.....-||+....-+-.. -|+=..+.|+++.|++...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46778888888 77778777777666666677787765533222 2344566788899887543
No 249
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=25.21 E-value=1.3e+02 Score=22.48 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=29.8
Q ss_pred ceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCH
Q psy3016 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~ 86 (305)
.-||||+++..+.+.--..+-+.++.=.-+-+..+ + ...||+|-++.+.
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~--~-~eqG~~~~t~G~~ 76 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT--N-TESGFEFQTFGEN 76 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC--C-CCCCcEEEecCCC
Confidence 36999999998887654455554544222333232 2 3449999887643
No 250
>KOG4672|consensus
Probab=24.43 E-value=1.7e+02 Score=27.81 Aligned_cols=8 Identities=0% Similarity=-0.134 Sum_probs=2.9
Q ss_pred HHHHHhcc
Q psy3016 50 LMWELFVQ 57 (305)
Q Consensus 50 ~L~~~F~~ 57 (305)
+|.+..++
T Consensus 51 qi~~~m~k 58 (487)
T KOG4672|consen 51 QITSKMEK 58 (487)
T ss_pred HHHHHHHh
Confidence 33333333
No 251
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=23.88 E-value=97 Score=21.41 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=20.9
Q ss_pred ceEEEEeCChHHHHHHHHHhcCeee
Q psy3016 203 GFAFINYASFEASDASIDAMHGQYL 227 (305)
Q Consensus 203 g~afV~f~~~~~A~~Al~~l~~~~~ 227 (305)
.+.+|.|.+..+|.+|-+.|...-+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 3689999999999999998876543
No 252
>KOG4213|consensus
Probab=23.40 E-value=1.2e+02 Score=25.37 Aligned_cols=59 Identities=17% Similarity=0.079 Sum_probs=37.9
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCC-CCcceEEEEEEcCHHHHHHHHHH
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVT-QTHQGYGFIEFMGEEDADYAIKI 95 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~-~~~~g~afV~f~~~e~A~~Ai~~ 95 (305)
..+++|.. +.....++|..+-+ |.+..+.+-..... ..-+|--||+|.+.+.|.++++.
T Consensus 110 ~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 110 KERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 44677766 33333344444444 78888876443211 14567889999999999988874
No 253
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=22.99 E-value=27 Score=32.26 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=37.1
Q ss_pred HHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCc
Q psy3016 48 ETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMI 99 (305)
Q Consensus 48 e~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~ 99 (305)
...+.+++.+.|.|..-.+.+.- +-|.+||-....++++++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtF----NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTF----NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHh----cCccceEEEEcHHHHHHHHHHHHhc
Confidence 46677888888877665554432 5588999999999999999998764
No 254
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=22.24 E-value=1.5e+02 Score=22.01 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=21.3
Q ss_pred eccCCCCcccCCCCCCccc-eEEEEeCChHHHHHHHH
Q psy3016 185 IGNLDPEIMRDPDTGNSKG-FAFINYASFEASDASID 220 (305)
Q Consensus 185 ~~~l~~~i~~d~~~~~~~g-~afV~f~~~~~A~~Al~ 220 (305)
+.+|..+-.--+..+..+| |.++.|.-..++.+.+.
T Consensus 44 ~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 44 VQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred EEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 4445543232333455566 57889987777777765
No 255
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=21.74 E-value=1.7e+02 Score=25.90 Aligned_cols=9 Identities=33% Similarity=0.338 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q psy3016 214 ASDASIDAM 222 (305)
Q Consensus 214 ~A~~Al~~l 222 (305)
+|.+=|.+|
T Consensus 119 ~AlqKIsAL 127 (253)
T PF05308_consen 119 AALQKISAL 127 (253)
T ss_pred HHHHHHHHH
Confidence 333333333
No 256
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=21.58 E-value=64 Score=19.40 Aligned_cols=15 Identities=20% Similarity=0.249 Sum_probs=9.9
Q ss_pred cccHHHHHHHhccCC
Q psy3016 45 KVSETLMWELFVQSG 59 (305)
Q Consensus 45 ~~te~~L~~~F~~~G 59 (305)
.+++++|++.|.+.+
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 678999999998764
No 257
>KOG0156|consensus
Probab=21.00 E-value=1.7e+02 Score=28.67 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=45.3
Q ss_pred eEEEcCCCccc---cHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeee
Q psy3016 36 TIYVGGLDDKV---SETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPI 106 (305)
Q Consensus 36 ~l~V~nLp~~~---te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l 106 (305)
-=+||||+.-- ....+.++-++||+|..+.+-.. -.|.-.+.+.|..|+.. ++..+.+|..
T Consensus 34 lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 34 LPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred CCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 34678887633 34567777778999999988221 37888899999999984 7888888775
No 258
>CHL00030 rpl23 ribosomal protein L23
Probab=20.82 E-value=1.6e+02 Score=21.74 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=26.2
Q ss_pred eEEEcCCCccccHHHHHHHhcc-CC-CeEEEEEcccC
Q psy3016 36 TIYVGGLDDKVSETLMWELFVQ-SG-PVVNVHMPKDR 70 (305)
Q Consensus 36 ~l~V~nLp~~~te~~L~~~F~~-~G-~i~~i~~~~~~ 70 (305)
..|+-.++..++..+|++.++. || .|..|+.+...
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~ 56 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLP 56 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcC
Confidence 3555567889999999999987 66 67777765543
Done!