Query psy3016
Match_columns 305
No_of_seqs 176 out of 2553
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 23:23:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 3.5E-37 1.2E-41 265.4 14.8 171 30-241 11-182 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 6.5E-35 2.2E-39 239.9 17.9 164 35-238 1-165 (166)
3 1b7f_A Protein (SXL-lethal pro 100.0 7E-35 2.4E-39 240.5 18.2 165 33-237 2-168 (168)
4 1fxl_A Paraneoplastic encephal 100.0 1.3E-34 4.5E-39 238.3 19.3 165 33-237 1-167 (167)
5 1l3k_A Heterogeneous nuclear r 100.0 9.2E-35 3.2E-39 245.9 17.2 173 30-243 9-186 (196)
6 2qfj_A FBP-interacting repress 100.0 2.4E-34 8.2E-39 247.0 18.4 170 32-240 26-205 (216)
7 2cjk_A Nuclear polyadenylated 100.0 1.6E-34 5.6E-39 238.2 13.7 165 33-240 2-166 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 7.1E-34 2.4E-38 235.8 16.9 165 33-237 2-174 (175)
9 2g4b_A Splicing factor U2AF 65 100.0 3.8E-32 1.3E-36 225.1 16.4 159 33-238 3-172 (172)
10 3smz_A Protein raver-1, ribonu 100.0 5E-32 1.7E-36 242.6 17.9 170 33-242 94-266 (284)
11 2yh0_A Splicing factor U2AF 65 100.0 4.2E-32 1.4E-36 229.8 16.3 164 33-242 3-196 (198)
12 1fje_B Nucleolin RBD12, protei 100.0 7.7E-33 2.6E-37 230.2 11.3 166 29-240 8-174 (175)
13 3tyt_A Heterogeneous nuclear r 100.0 8.1E-32 2.8E-36 230.6 17.5 159 33-237 3-204 (205)
14 3pgw_A U1-A; protein-RNA compl 100.0 4.9E-31 1.7E-35 235.9 19.0 162 30-238 5-281 (282)
15 2ghp_A U4/U6 snRNA-associated 100.0 3.2E-31 1.1E-35 238.3 17.0 167 33-240 116-291 (292)
16 2adc_A Polypyrimidine tract-bi 100.0 7.4E-31 2.5E-35 228.3 16.4 166 26-240 26-228 (229)
17 1qm9_A Polypyrimidine tract-bi 100.0 8.1E-31 2.8E-35 222.5 14.3 159 33-240 2-197 (198)
18 3smz_A Protein raver-1, ribonu 100.0 9E-30 3.1E-34 227.9 19.3 158 31-241 19-176 (284)
19 3sde_A Paraspeckle component 1 100.0 6.1E-30 2.1E-34 226.8 17.6 159 31-242 19-181 (261)
20 2ghp_A U4/U6 snRNA-associated 100.0 2E-29 6.8E-34 226.6 16.8 163 28-241 35-198 (292)
21 4f25_A Polyadenylate-binding p 99.9 2.9E-23 1E-27 161.2 10.9 103 33-137 4-113 (115)
22 2kn4_A Immunoglobulin G-bindin 99.9 9.5E-23 3.3E-27 166.8 13.7 139 63-242 2-152 (158)
23 4fxv_A ELAV-like protein 1; RN 99.9 2.4E-21 8.1E-26 146.4 11.4 81 33-113 18-98 (99)
24 2i2y_A Fusion protein consists 99.8 4.9E-21 1.7E-25 155.5 9.6 123 73-240 10-148 (150)
25 3s8s_A Histone-lysine N-methyl 99.8 3E-20 1E-24 143.0 10.7 84 32-115 4-87 (110)
26 2lxi_A RNA-binding protein 10; 99.8 1.1E-20 3.7E-25 140.5 6.8 84 34-117 1-86 (91)
27 2cq0_A Eukaryotic translation 99.8 1.4E-19 5E-24 137.2 11.9 92 26-117 7-98 (103)
28 3md1_A Nuclear and cytoplasmic 99.8 2.2E-19 7.4E-24 130.6 11.7 82 34-115 1-82 (83)
29 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.5E-19 5E-24 132.1 10.8 83 30-112 3-85 (85)
30 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.5E-19 5E-24 132.7 10.8 83 32-114 4-86 (87)
31 3lqv_A PRE-mRNA branch site pr 99.8 1.3E-19 4.4E-24 140.3 10.6 106 31-148 5-110 (115)
32 2dgo_A Cytotoxic granule-assoc 99.8 5.3E-19 1.8E-23 136.8 14.0 91 28-118 9-99 (115)
33 1x5u_A Splicing factor 3B subu 99.8 2.4E-19 8.4E-24 136.4 11.9 91 27-117 8-98 (105)
34 1whw_A Hypothetical protein ri 99.8 2.6E-19 9E-24 134.7 11.8 88 30-117 4-91 (99)
35 2lkz_A RNA-binding protein 5; 99.8 8.7E-20 3E-24 136.6 8.9 84 30-113 5-94 (95)
36 2cqc_A Arginine/serine-rich sp 99.8 2.9E-19 1E-23 133.3 11.6 86 28-113 9-94 (95)
37 2e5h_A Zinc finger CCHC-type a 99.8 3.8E-19 1.3E-23 132.5 12.1 84 29-112 11-94 (94)
38 2do4_A Squamous cell carcinoma 99.8 5.1E-19 1.7E-23 133.4 12.9 85 30-115 13-97 (100)
39 2dgs_A DAZ-associated protein 99.8 3.8E-19 1.3E-23 133.9 11.9 88 29-117 5-92 (99)
40 2x1f_A MRNA 3'-END-processing 99.8 3.4E-19 1.2E-23 133.5 11.6 83 34-116 2-84 (96)
41 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.3E-19 7.9E-24 135.8 10.5 88 30-117 8-95 (102)
42 2dnm_A SRP46 splicing factor; 99.8 2.2E-19 7.4E-24 136.2 10.3 90 28-117 7-96 (103)
43 2dnz_A Probable RNA-binding pr 99.8 3.6E-19 1.2E-23 132.9 11.0 85 32-116 3-87 (95)
44 2cpz_A CUG triplet repeat RNA- 99.8 3.7E-19 1.3E-23 137.7 11.4 88 30-117 21-108 (115)
45 2khc_A Testis-specific RNP-typ 99.8 3.9E-19 1.3E-23 138.2 11.4 84 29-112 35-118 (118)
46 2jrs_A RNA-binding protein 39; 99.8 4.2E-19 1.4E-23 136.1 11.4 88 28-115 20-107 (108)
47 2kxn_B Transformer-2 protein h 99.8 2.4E-19 8.3E-24 141.9 10.0 90 26-115 38-127 (129)
48 2dnh_A Bruno-like 5, RNA bindi 99.8 7.9E-19 2.7E-23 133.5 12.2 87 30-117 11-100 (105)
49 1oo0_B CG8781-PA, drosophila Y 99.8 4.8E-19 1.6E-23 135.9 11.1 86 30-115 22-107 (110)
50 2div_A TRNA selenocysteine ass 99.8 3.1E-19 1.1E-23 134.3 9.8 86 30-115 5-95 (99)
51 3p5t_L Cleavage and polyadenyl 99.8 7.3E-20 2.5E-24 135.6 6.1 82 35-116 2-85 (90)
52 2d9p_A Polyadenylate-binding p 99.8 7.1E-19 2.4E-23 133.4 11.7 88 29-118 10-97 (103)
53 1x4h_A RNA-binding protein 28; 99.8 8.1E-19 2.8E-23 134.7 12.1 88 30-117 11-104 (111)
54 2cph_A RNA binding motif prote 99.8 7.4E-19 2.5E-23 134.1 11.6 89 29-117 10-100 (107)
55 1x5s_A Cold-inducible RNA-bind 99.8 2.7E-19 9.2E-24 135.4 9.1 89 29-117 7-95 (102)
56 1x5t_A Splicing factor 3B subu 99.8 3.3E-19 1.1E-23 133.3 9.5 86 32-117 3-89 (96)
57 1p27_B RNA-binding protein 8A; 99.8 4.6E-19 1.6E-23 135.1 10.4 86 30-115 19-104 (106)
58 3ns6_A Eukaryotic translation 99.8 1.1E-19 3.7E-24 137.4 6.8 83 33-115 5-94 (100)
59 3s7r_A Heterogeneous nuclear r 99.8 8.9E-19 3.1E-23 128.6 11.1 83 28-111 5-87 (87)
60 2la6_A RNA-binding protein FUS 99.8 7.4E-19 2.5E-23 132.3 10.9 84 29-112 8-99 (99)
61 2cpf_A RNA binding motif prote 99.8 6.8E-19 2.3E-23 132.2 10.3 86 32-117 3-91 (98)
62 2dgp_A Bruno-like 4, RNA bindi 99.8 5.5E-19 1.9E-23 134.7 9.6 90 28-117 7-99 (106)
63 2hvz_A Splicing factor, argini 99.8 3E-19 1E-23 135.0 8.1 91 35-130 1-100 (101)
64 4fxv_A ELAV-like protein 1; RN 99.8 3.5E-19 1.2E-23 134.4 8.3 80 121-239 19-98 (99)
65 2cq3_A RNA-binding protein 9; 99.8 2.8E-18 9.5E-23 130.1 13.2 89 27-117 8-96 (103)
66 2cqd_A RNA-binding region cont 99.8 1.8E-18 6.1E-23 134.1 12.4 88 28-116 11-98 (116)
67 1u6f_A Tcubp1, RNA-binding pro 99.8 1.1E-18 3.9E-23 139.5 11.6 90 28-117 36-125 (139)
68 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.3E-18 7.7E-23 130.6 12.6 88 28-117 9-96 (103)
69 2cpe_A RNA-binding protein EWS 99.8 1.3E-18 4.5E-23 134.2 11.4 88 30-117 11-106 (113)
70 2cq4_A RNA binding motif prote 99.8 4.6E-19 1.6E-23 137.0 8.8 85 30-115 21-105 (114)
71 2ywk_A Putative RNA-binding pr 99.8 1.1E-18 3.7E-23 130.3 10.4 83 30-113 12-94 (95)
72 2rs2_A Musashi-1, RNA-binding 99.8 9.7E-19 3.3E-23 134.3 10.2 91 25-116 16-106 (109)
73 2dng_A Eukaryotic translation 99.8 1.9E-18 6.6E-23 131.0 11.8 86 30-117 11-96 (103)
74 4a8x_A RNA-binding protein wit 99.8 8.8E-19 3E-23 128.7 9.6 83 33-115 3-86 (88)
75 2do0_A HnRNP M, heterogeneous 99.8 2.9E-18 9.9E-23 132.3 12.9 88 27-115 8-95 (114)
76 1wi8_A EIF-4B, eukaryotic tran 99.8 2.1E-18 7.1E-23 131.1 11.9 86 30-117 11-97 (104)
77 2dgx_A KIAA0430 protein; RRM d 99.8 1.9E-18 6.7E-23 129.4 11.4 84 30-116 5-92 (96)
78 3ulh_A THO complex subunit 4; 99.8 1.7E-18 5.7E-23 132.2 11.3 84 28-112 23-106 (107)
79 2lea_A Serine/arginine-rich sp 99.8 3.2E-19 1.1E-23 142.3 7.3 126 77-243 5-130 (135)
80 2cqp_A RNA-binding protein 12; 99.8 8.1E-19 2.8E-23 131.8 9.1 85 30-114 11-95 (98)
81 2fy1_A RNA-binding motif prote 99.8 1.2E-18 4.2E-23 135.2 10.3 84 31-115 4-87 (116)
82 1x4e_A RNA binding motif, sing 99.8 3.1E-19 1.1E-23 130.5 6.4 81 32-112 3-83 (85)
83 2kt5_A RNA and export factor-b 99.8 3.5E-18 1.2E-22 134.0 12.7 88 27-115 28-115 (124)
84 3n9u_C Cleavage and polyadenyl 99.8 1.4E-18 4.9E-23 141.9 10.8 83 32-114 53-137 (156)
85 3ucg_A Polyadenylate-binding p 99.8 1.7E-18 5.7E-23 127.6 10.1 80 34-114 6-85 (89)
86 2dh8_A DAZ-associated protein 99.8 1.4E-18 4.9E-23 132.1 10.0 88 29-117 11-98 (105)
87 2err_A Ataxin-2-binding protei 99.8 1.3E-18 4.4E-23 133.5 9.8 92 21-114 16-107 (109)
88 1x4b_A Heterogeneous nuclear r 99.8 1E-18 3.5E-23 135.4 9.2 88 29-117 22-109 (116)
89 2dgv_A HnRNP M, heterogeneous 99.8 2.6E-18 8.8E-23 127.4 10.8 85 30-116 4-88 (92)
90 2ek1_A RNA-binding protein 12; 99.8 6.8E-19 2.3E-23 131.4 7.6 84 30-113 11-94 (95)
91 2dhg_A TRNA selenocysteine ass 99.8 1.5E-18 5.3E-23 131.7 9.7 87 30-117 5-93 (104)
92 1sjq_A Polypyrimidine tract-bi 99.8 1.8E-18 6.2E-23 131.2 9.8 83 30-118 12-96 (105)
93 2cqg_A TDP-43, TAR DNA-binding 99.8 8.3E-18 2.8E-22 127.4 13.2 88 28-117 9-96 (103)
94 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 5E-18 1.7E-22 135.6 12.2 85 27-111 56-140 (140)
95 2wbr_A GW182, gawky, LD47780P; 99.8 3E-18 1E-22 124.7 9.7 75 32-112 5-79 (89)
96 2j76_E EIF-4B, EIF4B, eukaryot 99.8 9.4E-19 3.2E-23 132.2 7.2 86 28-115 13-99 (100)
97 1s79_A Lupus LA protein; RRM, 99.8 1.2E-18 4.2E-23 132.3 7.9 80 32-113 9-88 (103)
98 1p1t_A Cleavage stimulation fa 99.8 1.4E-18 4.7E-23 131.9 8.1 84 33-116 7-90 (104)
99 1h2v_Z 20 kDa nuclear CAP bind 99.8 5.4E-18 1.8E-22 138.3 12.1 88 29-116 34-121 (156)
100 2mss_A Protein (musashi1); RNA 99.8 8.9E-19 3.1E-23 124.9 6.5 75 36-111 1-75 (75)
101 3ex7_B RNA-binding protein 8A; 99.8 3.3E-18 1.1E-22 134.5 10.1 87 30-116 18-104 (126)
102 2nlw_A Eukaryotic translation 99.8 3E-18 1E-22 130.6 9.4 87 27-115 8-101 (105)
103 2m2b_A RNA-binding protein 10; 99.8 7.7E-19 2.6E-23 139.3 6.2 86 30-116 19-110 (131)
104 1x4a_A Splicing factor, argini 99.8 1.4E-17 4.7E-22 127.6 13.0 84 30-116 18-101 (109)
105 1x5o_A RNA binding motif, sing 99.8 1.1E-17 3.9E-22 129.0 12.5 85 29-114 20-112 (114)
106 2lxi_A RNA-binding protein 10; 99.8 2.2E-18 7.6E-23 127.9 8.1 83 121-242 1-85 (91)
107 2dgw_A Probable RNA-binding pr 99.7 8E-18 2.7E-22 124.6 11.1 83 30-115 6-88 (91)
108 2cpi_A CCR4-NOT transcription 99.7 5.2E-18 1.8E-22 130.5 10.4 86 30-115 11-102 (111)
109 2kn4_A Immunoglobulin G-bindin 99.7 6.5E-18 2.2E-22 137.9 11.5 87 30-116 66-152 (158)
110 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.8E-18 9.5E-23 141.4 8.7 125 81-244 11-156 (165)
111 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1E-18 3.5E-23 125.2 5.2 76 35-111 1-76 (77)
112 2fc9_A NCL protein; structure 99.7 1.3E-17 4.4E-22 125.9 11.5 85 28-116 9-93 (101)
113 2dis_A Unnamed protein product 99.7 4.7E-18 1.6E-22 130.1 9.1 85 32-116 6-94 (109)
114 1x4d_A Matrin 3; structural ge 99.7 6.4E-18 2.2E-22 127.9 9.5 80 30-115 11-93 (102)
115 2cpy_A RNA-binding protein 12; 99.7 4.3E-18 1.5E-22 131.7 8.6 85 29-115 10-95 (114)
116 2jwn_A Embryonic polyadenylate 99.7 8.1E-18 2.8E-22 131.8 10.2 83 33-116 35-117 (124)
117 2lea_A Serine/arginine-rich sp 99.7 2.5E-18 8.5E-23 137.1 7.2 91 26-116 39-129 (135)
118 2lkz_A RNA-binding protein 5; 99.7 4.1E-18 1.4E-22 127.5 7.6 82 121-239 9-94 (95)
119 2ki2_A SS-DNA binding protein 99.7 7.6E-19 2.6E-23 129.8 3.6 81 35-116 2-82 (90)
120 2jvo_A Nucleolar protein 3; nu 99.7 1.1E-17 3.6E-22 128.2 10.0 85 24-116 21-105 (108)
121 3r27_A HnRNP L, heterogeneous 99.7 1.4E-17 4.6E-22 125.2 10.3 79 30-114 17-97 (100)
122 2fc8_A NCL protein; structure 99.7 2E-17 7E-22 125.0 11.4 88 26-116 7-94 (102)
123 2e5j_A Methenyltetrahydrofolat 99.7 9.2E-18 3.1E-22 125.9 9.3 84 27-115 12-95 (97)
124 2dnq_A RNA-binding protein 4B; 99.7 1.8E-17 6E-22 122.5 10.6 80 30-117 4-83 (90)
125 1wel_A RNA-binding protein 12; 99.7 3.1E-18 1.1E-22 134.4 6.7 84 30-114 21-104 (124)
126 2db1_A Heterogeneous nuclear r 99.7 9.3E-18 3.2E-22 130.6 9.2 83 30-114 13-98 (118)
127 3s8s_A Histone-lysine N-methyl 99.7 6.6E-18 2.3E-22 129.8 8.1 81 120-239 5-85 (110)
128 1wg5_A Heterogeneous nuclear r 99.7 1.1E-17 3.7E-22 127.2 9.2 85 29-115 10-95 (104)
129 2krb_A Eukaryotic translation 99.7 3.3E-18 1.1E-22 124.0 6.0 73 34-108 1-80 (81)
130 2cq1_A PTB-like protein L; RRM 99.7 4.8E-17 1.7E-21 122.9 12.6 82 30-117 11-94 (101)
131 2a3j_A U1 small nuclear ribonu 99.7 1.3E-17 4.4E-22 131.4 9.5 82 31-115 26-111 (127)
132 1x4c_A Splicing factor, argini 99.7 4.1E-17 1.4E-21 124.8 12.2 80 30-116 11-95 (108)
133 2ad9_A Polypyrimidine tract-bi 99.7 2E-17 6.8E-22 128.4 10.4 83 30-118 27-111 (119)
134 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.4E-17 8.3E-22 135.7 11.3 87 30-116 68-154 (165)
135 1wez_A HnRNP H', FTP-3, hetero 99.7 1E-17 3.4E-22 127.1 8.0 84 29-115 10-93 (102)
136 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.7E-17 9.4E-22 124.3 10.2 87 118-243 9-95 (102)
137 2jvr_A Nucleolar protein 3; RN 99.7 1.5E-17 5E-22 127.9 8.8 81 30-114 24-105 (111)
138 2ytc_A PRE-mRNA-splicing facto 99.7 2.8E-17 9.6E-22 119.9 9.9 77 30-112 8-85 (85)
139 2dnp_A RNA-binding protein 14; 99.7 4.6E-17 1.6E-21 120.2 11.1 81 29-117 4-84 (90)
140 1why_A Hypothetical protein ri 99.7 4.7E-17 1.6E-21 121.9 11.3 80 30-115 13-94 (97)
141 2la4_A Nuclear and cytoplasmic 99.7 1.6E-17 5.4E-22 125.4 8.7 77 31-113 24-100 (101)
142 1wex_A Hypothetical protein (r 99.7 3.6E-17 1.2E-21 124.4 10.7 82 30-117 11-94 (104)
143 2dgt_A RNA-binding protein 30; 99.7 5.7E-17 2E-21 120.2 11.6 81 29-117 5-85 (92)
144 2hgl_A HNRPF protein, heteroge 99.7 1E-17 3.5E-22 133.5 7.9 84 29-114 39-125 (136)
145 1fj7_A Nucleolin RBD1, protein 99.7 2.2E-18 7.4E-23 130.2 3.7 85 30-116 13-97 (101)
146 1x4g_A Nucleolysin TIAR; struc 99.7 3.8E-17 1.3E-21 125.1 10.5 81 30-116 21-101 (109)
147 2xnq_A Nuclear polyadenylated 99.7 5.5E-17 1.9E-21 121.7 11.1 78 29-114 17-95 (97)
148 2cpj_A Non-POU domain-containi 99.7 3.2E-17 1.1E-21 123.3 9.8 80 30-115 11-90 (99)
149 1x5s_A Cold-inducible RNA-bind 99.7 2.9E-17 9.9E-22 124.1 9.6 87 118-243 9-95 (102)
150 1nu4_A U1A RNA binding domain; 99.7 1.9E-17 6.4E-22 124.0 8.4 83 31-116 5-91 (97)
151 1iqt_A AUF1, heterogeneous nuc 99.7 4.1E-18 1.4E-22 121.4 4.4 75 36-111 1-75 (75)
152 1whw_A Hypothetical protein ri 99.7 3.9E-17 1.3E-21 122.7 10.1 85 120-243 7-91 (99)
153 2cq0_A Eukaryotic translation 99.7 1.8E-17 6.1E-22 125.6 8.3 88 117-243 11-98 (103)
154 2dgu_A Heterogeneous nuclear r 99.7 5.8E-17 2E-21 122.8 11.1 80 30-117 7-86 (103)
155 3md3_A Nuclear and cytoplasmic 99.7 1E-16 3.5E-21 130.7 13.2 83 30-112 83-165 (166)
156 2dnn_A RNA-binding protein 12; 99.7 2.8E-17 9.6E-22 126.0 9.2 81 31-114 13-93 (109)
157 2dnz_A Probable RNA-binding pr 99.7 2.9E-17 9.8E-22 122.4 8.9 85 120-243 4-88 (95)
158 2cpz_A CUG triplet repeat RNA- 99.7 3.6E-17 1.2E-21 126.5 9.6 86 119-243 23-108 (115)
159 3md1_A Nuclear and cytoplasmic 99.7 2.3E-17 8E-22 119.7 8.0 80 122-240 2-81 (83)
160 3q2s_C Cleavage and polyadenyl 99.7 1.5E-17 5.2E-22 144.2 8.1 82 33-114 67-150 (229)
161 2dnm_A SRP46 splicing factor; 99.7 3.2E-17 1.1E-21 124.2 8.9 87 118-243 10-96 (103)
162 2cpd_A Apobec-1 stimulating pr 99.7 1.4E-16 4.7E-21 119.8 12.3 79 30-116 11-91 (99)
163 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.5E-17 8.7E-22 120.6 8.0 82 120-240 5-86 (87)
164 2i2y_A Fusion protein consists 99.7 5.1E-17 1.8E-21 131.6 10.4 83 28-115 67-149 (150)
165 1x5t_A Splicing factor 3B subu 99.7 5.2E-17 1.8E-21 121.3 9.6 90 120-247 4-93 (96)
166 2lmi_A GRSF-1, G-rich sequence 99.7 9.4E-18 3.2E-22 128.2 5.6 84 29-114 6-92 (107)
167 2x1f_A MRNA 3'-END-processing 99.7 3.7E-17 1.3E-21 122.2 8.7 83 121-242 2-84 (96)
168 1x5u_A Splicing factor 3B subu 99.7 4.5E-17 1.5E-21 123.7 9.3 88 117-243 11-98 (105)
169 1wf1_A RNA-binding protein RAL 99.7 1.1E-16 3.7E-21 122.8 11.4 77 31-115 24-101 (110)
170 2xs2_A Deleted in azoospermia- 99.7 1.1E-17 3.9E-22 126.4 5.7 82 31-115 6-87 (102)
171 3p5t_L Cleavage and polyadenyl 99.7 1.1E-17 3.7E-22 123.8 5.4 81 122-241 2-84 (90)
172 1x4f_A Matrin 3; structural ge 99.7 3.7E-17 1.3E-21 125.6 8.4 81 30-116 21-104 (112)
173 2f3j_A RNA and export factor b 99.7 8.5E-17 2.9E-21 134.1 11.3 86 29-115 83-168 (177)
174 2cpx_A Hypothetical protein FL 99.7 9.3E-18 3.2E-22 129.7 5.1 84 30-117 21-108 (115)
175 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.4E-17 1.2E-21 119.4 7.9 80 120-238 6-85 (85)
176 2cph_A RNA binding motif prote 99.7 7.9E-17 2.7E-21 122.7 10.2 87 118-243 12-100 (107)
177 2cqc_A Arginine/serine-rich sp 99.7 4.4E-17 1.5E-21 121.4 8.6 84 117-239 11-94 (95)
178 1x4h_A RNA-binding protein 28; 99.7 8.2E-17 2.8E-21 123.5 10.3 87 118-243 12-104 (111)
179 2dgs_A DAZ-associated protein 99.7 6.2E-17 2.1E-21 121.7 9.4 85 119-243 8-92 (99)
180 2dgo_A Cytotoxic granule-assoc 99.7 7.4E-17 2.5E-21 124.6 9.8 87 117-242 11-97 (115)
181 2g4b_A Splicing factor U2AF 65 99.7 1.2E-16 4.1E-21 131.5 11.6 81 32-112 92-172 (172)
182 2dgp_A Bruno-like 4, RNA bindi 99.7 7.1E-17 2.4E-21 122.8 9.5 87 118-243 10-99 (106)
183 2yh0_A Splicing factor U2AF 65 99.7 2.2E-16 7.7E-21 132.8 13.4 86 31-116 111-196 (198)
184 2cpe_A RNA-binding protein EWS 99.7 8.9E-17 3E-21 123.8 10.0 95 118-243 12-106 (113)
185 1fjc_A Nucleolin RBD2, protein 99.7 3.8E-17 1.3E-21 122.1 7.6 82 30-116 12-93 (96)
186 3ns6_A Eukaryotic translation 99.7 1.9E-17 6.4E-22 125.0 5.9 81 121-240 6-93 (100)
187 1oo0_B CG8781-PA, drosophila Y 99.7 8.5E-17 2.9E-21 123.3 9.8 85 119-242 24-108 (110)
188 1p27_B RNA-binding protein 8A; 99.7 6.5E-17 2.2E-21 123.0 8.8 84 119-241 21-104 (106)
189 2dnh_A Bruno-like 5, RNA bindi 99.7 7.2E-17 2.5E-21 122.6 9.0 86 119-244 13-101 (105)
190 2kvi_A Nuclear polyadenylated 99.7 4.1E-17 1.4E-21 122.1 7.3 79 30-116 6-85 (96)
191 2lcw_A RNA-binding protein FUS 99.5 1.9E-18 6.5E-23 134.0 0.0 87 31-117 4-98 (116)
192 2do4_A Squamous cell carcinoma 99.7 8.3E-17 2.8E-21 121.2 9.1 84 119-242 15-98 (100)
193 3pgw_S U1-70K; protein-RNA com 99.7 8.7E-18 3E-22 158.8 4.4 154 50-242 8-184 (437)
194 2e5h_A Zinc finger CCHC-type a 99.7 8.5E-17 2.9E-21 119.6 8.9 81 119-238 14-94 (94)
195 2cqh_A IGF-II mRNA-binding pro 99.7 5.9E-17 2E-21 120.3 8.0 80 31-117 5-86 (93)
196 2d9p_A Polyadenylate-binding p 99.7 7.4E-17 2.5E-21 122.1 8.5 86 118-244 12-97 (103)
197 4f25_A Polyadenylate-binding p 99.7 4E-17 1.4E-21 126.3 7.1 81 121-242 5-85 (115)
198 2e44_A Insulin-like growth fac 99.7 1E-16 3.6E-21 119.7 9.0 82 30-115 11-93 (96)
199 1whx_A Hypothetical protein ri 99.7 4.7E-17 1.6E-21 125.2 7.0 76 32-113 8-83 (111)
200 2fy1_A RNA-binding motif prote 99.7 1.2E-16 4E-21 124.0 9.2 83 120-242 6-88 (116)
201 2e5g_A U6 snRNA-specific termi 99.7 2.3E-16 8E-21 117.4 10.4 80 31-116 5-84 (94)
202 3ex7_B RNA-binding protein 8A; 99.7 1.2E-16 4.2E-21 125.4 9.3 88 118-244 19-106 (126)
203 2la6_A RNA-binding protein FUS 99.7 1.1E-16 3.8E-21 120.3 8.6 89 119-238 11-99 (99)
204 3q2s_C Cleavage and polyadenyl 99.7 1.5E-17 5.2E-22 144.2 3.9 83 120-241 67-151 (229)
205 2cpf_A RNA binding motif prote 99.7 6.4E-17 2.2E-21 121.3 6.8 84 120-242 4-90 (98)
206 1wg1_A KIAA1579 protein, homol 99.7 1.8E-16 6.2E-21 116.6 9.0 76 32-114 3-78 (88)
207 2kxn_B Transformer-2 protein h 99.7 9.8E-17 3.3E-21 126.8 8.0 86 117-241 42-127 (129)
208 1wi8_A EIF-4B, eukaryotic tran 99.7 1.7E-16 5.9E-21 120.4 9.1 84 119-243 13-97 (104)
209 1u6f_A Tcubp1, RNA-binding pro 99.7 1.4E-16 4.7E-21 127.3 8.8 86 119-243 40-125 (139)
210 2jrs_A RNA-binding protein 39; 99.7 7.7E-17 2.6E-21 123.4 6.8 85 118-241 23-107 (108)
211 2m2b_A RNA-binding protein 10; 99.7 9.7E-17 3.3E-21 127.1 7.4 86 119-242 21-110 (131)
212 4a8x_A RNA-binding protein wit 99.7 1.1E-16 3.6E-21 117.5 7.0 82 121-241 4-86 (88)
213 2khc_A Testis-specific RNP-typ 99.7 9.4E-17 3.2E-21 124.6 7.1 81 119-238 38-118 (118)
214 2cqp_A RNA-binding protein 12; 99.7 2.1E-16 7.2E-21 118.5 8.8 83 119-240 13-95 (98)
215 2dh8_A DAZ-associated protein 99.7 1.7E-16 5.7E-21 120.6 8.3 86 118-243 13-98 (105)
216 2dng_A Eukaryotic translation 99.7 1.9E-16 6.6E-21 119.9 8.5 84 119-243 13-96 (103)
217 3egn_A RNA-binding protein 40; 99.7 5E-17 1.7E-21 130.6 5.4 87 30-116 41-132 (143)
218 2e5i_A Heterogeneous nuclear r 99.7 7.2E-16 2.4E-20 120.6 11.8 75 35-115 26-103 (124)
219 2j8a_A Histone-lysine N-methyl 99.7 1.2E-16 4.2E-21 123.9 7.3 80 34-113 2-95 (136)
220 2cq3_A RNA-binding protein 9; 99.7 4.1E-16 1.4E-20 118.0 10.1 86 117-243 11-96 (103)
221 1l3k_A Heterogeneous nuclear r 99.7 5.1E-16 1.7E-20 130.4 11.7 86 31-117 101-186 (196)
222 2dhg_A TRNA selenocysteine ass 99.7 1.2E-16 4E-21 121.2 7.1 86 118-243 6-93 (104)
223 2cqi_A Nucleolysin TIAR; RNA r 99.7 4.4E-16 1.5E-20 117.9 10.2 85 118-243 12-96 (103)
224 1b7f_A Protein (SXL-lethal pro 99.7 6.4E-16 2.2E-20 126.5 11.8 81 31-111 86-168 (168)
225 4f02_A Polyadenylate-binding p 99.7 2.5E-16 8.6E-21 134.9 9.7 81 33-115 102-182 (213)
226 2ek1_A RNA-binding protein 12; 99.7 1.6E-16 5.4E-21 118.4 7.3 80 120-238 14-93 (95)
227 2div_A TRNA selenocysteine ass 99.7 1.3E-16 4.6E-21 119.8 7.0 83 119-240 7-94 (99)
228 1x5p_A Negative elongation fac 99.7 1.4E-15 4.9E-20 113.8 12.5 79 30-116 11-89 (97)
229 2dha_A FLJ20171 protein; RRM d 99.7 8.7E-17 3E-21 125.9 6.1 81 31-113 20-104 (123)
230 2hgm_A HNRPF protein, heteroge 99.7 1.4E-16 4.8E-21 125.1 7.1 82 30-114 38-121 (126)
231 2hgn_A Heterogeneous nuclear r 99.7 3.8E-17 1.3E-21 130.6 3.9 83 30-115 42-124 (139)
232 1sjr_A Polypyrimidine tract-bi 99.7 3.4E-16 1.2E-20 127.7 9.6 81 31-115 43-125 (164)
233 2cq2_A Hypothetical protein LO 99.7 3.5E-16 1.2E-20 120.3 9.1 81 30-116 21-108 (114)
234 2fc8_A NCL protein; structure 99.7 3.5E-16 1.2E-20 118.1 8.9 85 117-243 11-95 (102)
235 2dnl_A Cytoplasmic polyadenyla 99.7 3.8E-16 1.3E-20 120.6 9.3 80 30-112 4-86 (114)
236 3zzy_A Polypyrimidine tract-bi 99.6 6.9E-16 2.4E-20 121.3 10.6 80 31-115 25-107 (130)
237 2ywk_A Putative RNA-binding pr 99.6 2.4E-16 8.1E-21 117.4 7.6 81 119-239 14-94 (95)
238 2cqd_A RNA-binding region cont 99.6 2.9E-16 9.9E-21 121.5 8.4 84 118-241 14-97 (116)
239 1p1t_A Cleavage stimulation fa 99.6 1.3E-16 4.6E-21 120.8 6.3 84 120-242 7-90 (104)
240 3n9u_C Cleavage and polyadenyl 99.6 1.5E-16 5E-21 129.9 7.0 83 120-241 54-138 (156)
241 2mss_A Protein (musashi1); RNA 99.6 1.8E-16 6.1E-21 112.9 6.5 75 123-237 1-75 (75)
242 2cjk_A Nuclear polyadenylated 99.6 1.3E-16 4.4E-21 130.6 6.6 81 33-114 86-166 (167)
243 3d2w_A TAR DNA-binding protein 99.6 7E-16 2.4E-20 113.8 9.7 78 30-116 7-86 (89)
244 2qfj_A FBP-interacting repress 99.6 7.2E-16 2.5E-20 131.4 11.2 85 31-115 122-206 (216)
245 3ucg_A Polyadenylate-binding p 99.6 2E-16 6.8E-21 116.3 6.6 80 121-240 6-85 (89)
246 2fc9_A NCL protein; structure 99.6 6.7E-16 2.3E-20 116.4 9.7 82 118-242 12-93 (101)
247 3ulh_A THO complex subunit 4; 99.6 3.9E-16 1.3E-20 118.9 8.2 81 118-238 26-106 (107)
248 3pgw_S U1-70K; protein-RNA com 99.6 6.4E-16 2.2E-20 146.1 11.4 86 30-115 98-183 (437)
249 1fxl_A Paraneoplastic encephal 99.6 1.1E-15 3.6E-20 124.8 11.3 81 31-111 85-167 (167)
250 2do0_A HnRNP M, heterogeneous 99.6 8.2E-16 2.8E-20 118.4 9.9 82 119-240 13-94 (114)
251 2cq4_A RNA binding motif prote 99.6 2.6E-16 8.8E-21 121.4 6.9 82 120-241 24-105 (114)
252 2wbr_A GW182, gawky, LD47780P; 99.6 1.8E-16 6.2E-21 115.3 5.6 75 121-240 7-81 (89)
253 2dgx_A KIAA0430 protein; RRM d 99.6 6.1E-16 2.1E-20 115.7 8.6 80 120-241 8-91 (96)
254 1x4a_A Splicing factor, argini 99.6 8.4E-16 2.9E-20 117.5 9.5 83 119-243 20-102 (109)
255 3beg_B Splicing factor, argini 99.6 3.3E-16 1.1E-20 121.2 7.3 76 32-114 14-94 (115)
256 3s7r_A Heterogeneous nuclear r 99.6 5.4E-16 1.8E-20 113.6 8.0 80 118-237 8-87 (87)
257 1sjq_A Polypyrimidine tract-bi 99.6 2.7E-16 9.3E-21 119.2 6.6 81 119-244 14-96 (105)
258 1x4b_A Heterogeneous nuclear r 99.6 4.2E-16 1.4E-20 120.6 7.8 84 120-243 26-109 (116)
259 2cpi_A CCR4-NOT transcription 99.6 4.8E-16 1.6E-20 119.5 7.9 84 120-242 14-103 (111)
260 2cpx_A Hypothetical protein FL 99.6 2.8E-16 9.4E-21 121.3 6.5 87 119-244 23-109 (115)
261 2hzc_A Splicing factor U2AF 65 99.6 6E-16 2.1E-20 113.2 8.0 72 32-110 4-86 (87)
262 2cqg_A TDP-43, TAR DNA-binding 99.6 1.1E-15 3.8E-20 115.6 9.7 85 118-243 12-96 (103)
263 1h2v_Z 20 kDa nuclear CAP bind 99.6 7E-16 2.4E-20 125.7 8.9 85 119-242 37-121 (156)
264 2rs2_A Musashi-1, RNA-binding 99.6 5.5E-16 1.9E-20 118.8 7.7 84 119-242 23-106 (109)
265 2dgv_A HnRNP M, heterogeneous 99.6 5.4E-16 1.8E-20 114.8 7.4 83 119-242 6-88 (92)
266 2kt5_A RNA and export factor-b 99.6 9.1E-16 3.1E-20 120.1 9.1 83 119-241 33-115 (124)
267 1s79_A Lupus LA protein; RRM, 99.6 3E-16 1E-20 119.0 6.0 79 120-239 10-88 (103)
268 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.8E-16 6E-21 119.6 4.6 82 119-241 17-99 (100)
269 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.8E-16 9.7E-21 112.3 5.3 76 122-237 1-76 (77)
270 2jwn_A Embryonic polyadenylate 99.6 4.4E-16 1.5E-20 121.9 6.8 83 120-242 35-117 (124)
271 2dgw_A Probable RNA-binding pr 99.6 1.2E-15 4.1E-20 112.7 8.8 80 120-241 9-88 (91)
272 2err_A Ataxin-2-binding protei 99.6 8.7E-16 3E-20 117.6 8.3 82 118-240 26-107 (109)
273 2hgn_A Heterogeneous nuclear r 99.6 1.4E-16 4.7E-21 127.4 3.8 123 77-242 2-125 (139)
274 1x4d_A Matrin 3; structural ge 99.6 6E-16 2.1E-20 117.0 7.1 80 117-241 11-93 (102)
275 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1E-15 3.4E-20 122.1 8.9 80 119-237 61-140 (140)
276 2ki2_A SS-DNA binding protein 99.6 1E-16 3.5E-21 118.2 2.8 80 122-241 2-81 (90)
277 1x4e_A RNA binding motif, sing 99.6 9.9E-17 3.4E-21 117.0 2.7 80 120-238 4-83 (85)
278 2diu_A KIAA0430 protein; struc 99.6 1.5E-15 5.1E-20 111.5 8.9 74 34-117 9-87 (96)
279 2cq1_A PTB-like protein L; RRM 99.6 1.3E-15 4.4E-20 115.1 8.8 82 118-244 12-95 (101)
280 1wf0_A TDP-43, TAR DNA-binding 99.6 6.6E-16 2.2E-20 113.5 6.5 79 32-117 3-81 (88)
281 2cpy_A RNA-binding protein 12; 99.6 8.3E-16 2.8E-20 118.7 7.3 82 119-241 13-95 (114)
282 1fje_B Nucleolin RBD12, protei 99.6 3E-15 1E-19 123.6 11.1 96 3-114 79-174 (175)
283 2dis_A Unnamed protein product 99.6 9E-16 3.1E-20 117.3 7.3 84 120-242 7-94 (109)
284 3r27_A HnRNP L, heterogeneous 99.6 1E-15 3.5E-20 114.9 7.2 78 119-241 19-98 (100)
285 2hgl_A HNRPF protein, heteroge 99.6 6.2E-16 2.1E-20 123.1 6.3 82 119-241 42-126 (136)
286 1wg5_A Heterogeneous nuclear r 99.6 1.6E-15 5.6E-20 115.1 8.1 84 119-243 13-97 (104)
287 1fj7_A Nucleolin RBD1, protein 99.6 4.2E-16 1.4E-20 117.5 4.7 82 120-242 16-97 (101)
288 1iqt_A AUF1, heterogeneous nuc 99.6 7.8E-16 2.7E-20 109.4 5.8 75 123-237 1-75 (75)
289 2nlw_A Eukaryotic translation 99.6 1.7E-15 5.8E-20 115.2 7.8 80 120-240 14-100 (105)
290 2pe8_A Splicing factor 45; RRM 99.6 8.1E-15 2.8E-19 111.5 11.4 83 31-113 5-93 (105)
291 2ad9_A Polypyrimidine tract-bi 99.6 2E-15 6.9E-20 117.1 8.1 81 119-244 29-111 (119)
292 2bz2_A Negative elongation fac 99.6 2.6E-15 9E-20 117.2 8.8 78 30-115 35-112 (121)
293 1wel_A RNA-binding protein 12; 99.6 9.9E-16 3.4E-20 120.0 6.4 82 120-241 24-105 (124)
294 1x5o_A RNA binding motif, sing 99.6 1.7E-15 5.9E-20 116.7 7.6 82 119-240 23-112 (114)
295 1x4c_A Splicing factor, argini 99.6 3.1E-15 1.1E-19 114.3 8.7 78 120-243 14-96 (108)
296 2lcw_A RNA-binding protein FUS 99.4 9.7E-17 3.3E-21 124.3 0.0 93 120-243 6-98 (116)
297 1wf1_A RNA-binding protein RAL 99.6 2.6E-15 8.8E-20 115.0 8.0 94 102-242 6-102 (110)
298 3nmr_A Cugbp ELAV-like family 99.6 4.7E-15 1.6E-19 122.0 9.8 80 32-112 93-175 (175)
299 2db1_A Heterogeneous nuclear r 99.6 2.1E-15 7E-20 117.3 7.2 80 120-240 16-98 (118)
300 2dnq_A RNA-binding protein 4B; 99.6 3.6E-15 1.2E-19 109.9 8.1 78 119-243 6-83 (90)
301 1why_A Hypothetical protein ri 99.6 3.1E-15 1.1E-19 111.9 7.9 78 119-241 15-94 (97)
302 1wex_A Hypothetical protein (r 99.6 3E-15 1E-19 113.7 7.8 80 118-242 12-93 (104)
303 2hvz_A Splicing factor, argini 99.6 1.9E-15 6.6E-20 113.8 6.6 76 122-241 1-76 (101)
304 2cpd_A Apobec-1 stimulating pr 99.6 5.4E-15 1.8E-19 111.0 9.0 77 119-242 13-91 (99)
305 1wez_A HnRNP H', FTP-3, hetero 99.6 1.7E-15 5.8E-20 114.6 6.3 82 119-242 13-94 (102)
306 2cpj_A Non-POU domain-containi 99.6 4.5E-15 1.5E-19 111.4 8.5 81 117-242 11-91 (99)
307 1x4g_A Nucleolysin TIAR; struc 99.6 3.9E-15 1.3E-19 113.9 8.2 78 120-242 24-101 (109)
308 2krb_A Eukaryotic translation 99.6 7.8E-16 2.7E-20 111.3 3.9 73 122-235 2-81 (81)
309 2dgt_A RNA-binding protein 30; 99.6 9.2E-15 3.1E-19 108.2 9.7 77 119-242 8-84 (92)
310 2jvr_A Nucleolar protein 3; RN 99.6 3.6E-15 1.2E-19 114.5 7.6 78 120-240 27-105 (111)
311 2a3j_A U1 small nuclear ribonu 99.6 2.8E-15 9.4E-20 118.0 7.1 82 119-242 27-112 (127)
312 2e5j_A Methenyltetrahydrofolat 99.6 4.9E-15 1.7E-19 110.9 8.2 79 119-241 17-95 (97)
313 2voo_A Lupus LA protein; RNA-b 99.6 8.6E-15 2.9E-19 123.6 10.5 81 33-115 108-188 (193)
314 2dgu_A Heterogeneous nuclear r 99.6 8.1E-15 2.8E-19 110.9 8.8 78 119-243 9-86 (103)
315 2cqh_A IGF-II mRNA-binding pro 99.6 6.7E-15 2.3E-19 109.1 8.2 78 120-243 7-86 (93)
316 1fjc_A Nucleolin RBD2, protein 99.6 3.5E-15 1.2E-19 111.3 6.6 81 118-242 13-93 (96)
317 2la4_A Nuclear and cytoplasmic 99.6 3.2E-15 1.1E-19 112.6 6.4 76 120-240 26-101 (101)
318 2lmi_A GRSF-1, G-rich sequence 99.6 2.1E-15 7.2E-20 115.0 5.4 81 119-240 9-92 (107)
319 2dnp_A RNA-binding protein 14; 99.6 9.4E-15 3.2E-19 107.7 8.7 77 119-242 7-83 (90)
320 3lqv_A PRE-mRNA branch site pr 99.6 4.2E-15 1.5E-19 114.6 7.0 82 120-243 7-88 (115)
321 3egn_A RNA-binding protein 40; 99.6 2.5E-15 8.6E-20 120.6 5.9 88 119-242 43-132 (143)
322 3u1l_A PRE-mRNA-splicing facto 99.6 8E-15 2.8E-19 127.1 9.4 80 30-115 130-230 (240)
323 1x4f_A Matrin 3; structural ge 99.6 4.5E-15 1.5E-19 113.9 6.6 81 118-243 22-105 (112)
324 2ytc_A PRE-mRNA-splicing facto 99.6 6.6E-15 2.3E-19 107.2 7.2 75 119-238 10-85 (85)
325 1nu4_A U1A RNA binding domain; 99.6 3.5E-15 1.2E-19 111.4 5.8 82 119-242 6-91 (97)
326 2jvo_A Nucleolar protein 3; nu 99.5 7.9E-15 2.7E-19 112.1 7.5 77 119-242 29-105 (108)
327 2dnn_A RNA-binding protein 12; 99.5 7.1E-15 2.4E-19 112.5 7.1 78 121-240 16-93 (109)
328 1whx_A Hypothetical protein ri 99.5 9.8E-15 3.4E-19 112.1 7.9 78 120-242 9-86 (111)
329 2kvi_A Nuclear polyadenylated 99.5 4.9E-15 1.7E-19 110.7 5.9 78 119-243 8-86 (96)
330 2cq2_A Hypothetical protein LO 99.5 1.4E-14 4.9E-19 111.3 7.9 81 119-244 23-110 (114)
331 2f3j_A RNA and export factor b 99.5 1.2E-14 4E-19 121.0 7.9 83 119-241 86-168 (177)
332 2xnq_A Nuclear polyadenylated 99.5 1.3E-14 4.4E-19 108.7 7.3 75 119-240 20-95 (97)
333 1x5p_A Negative elongation fac 99.5 2.2E-14 7.6E-19 107.2 8.3 80 117-243 11-90 (97)
334 2e5g_A U6 snRNA-specific termi 99.5 1.4E-14 4.6E-19 107.8 7.0 78 120-242 7-84 (94)
335 2xs2_A Deleted in azoospermia- 99.5 7.9E-15 2.7E-19 110.6 5.8 81 120-242 8-88 (102)
336 1sjr_A Polypyrimidine tract-bi 99.5 1.1E-14 3.8E-19 118.7 6.7 79 121-242 46-126 (164)
337 3sde_A Paraspeckle component 1 99.5 7.1E-14 2.4E-18 123.3 12.3 82 34-116 96-181 (261)
338 2diu_A KIAA0430 protein; struc 99.5 2.2E-14 7.4E-19 105.3 7.3 74 121-243 8-87 (96)
339 2j8a_A Histone-lysine N-methyl 99.5 9.9E-15 3.4E-19 113.2 5.6 77 122-237 3-93 (136)
340 2e44_A Insulin-like growth fac 99.5 2.1E-14 7.3E-19 107.0 6.8 80 120-241 14-93 (96)
341 1qm9_A Polypyrimidine tract-bi 99.5 6.3E-14 2.1E-18 118.1 10.4 76 33-113 119-196 (198)
342 2dit_A HIV TAT specific factor 99.5 1.3E-13 4.5E-18 105.9 11.2 82 30-115 11-103 (112)
343 3pgw_A U1-A; protein-RNA compl 99.5 8.7E-14 3E-18 123.7 11.7 78 30-112 203-281 (282)
344 1wg1_A KIAA1579 protein, homol 99.5 2.5E-14 8.6E-19 105.0 6.8 75 121-241 5-79 (88)
345 2adc_A Polypyrimidine tract-bi 99.5 1.3E-13 4.4E-18 119.2 12.3 77 33-114 150-228 (229)
346 2dha_A FLJ20171 protein; RRM d 99.5 7.4E-15 2.5E-19 114.8 4.1 81 120-241 22-106 (123)
347 3zzy_A Polypyrimidine tract-bi 99.5 1.8E-14 6.3E-19 113.1 6.3 78 122-243 29-109 (130)
348 2hgm_A HNRPF protein, heteroge 99.5 1.2E-14 4.2E-19 114.0 4.6 81 119-241 40-122 (126)
349 1jmt_A Splicing factor U2AF 35 99.5 3.3E-14 1.1E-18 107.9 6.3 72 39-111 20-103 (104)
350 2pe8_A Splicing factor 45; RRM 99.5 4.8E-14 1.6E-18 107.2 7.1 83 120-241 7-95 (105)
351 3v4m_A Splicing factor U2AF 65 99.5 1.6E-13 5.6E-18 104.2 9.8 82 32-113 3-96 (105)
352 3beg_B Splicing factor, argini 99.5 4.3E-14 1.5E-18 109.2 6.3 74 120-239 15-93 (115)
353 2voo_A Lupus LA protein; RNA-b 99.5 1.1E-13 3.7E-18 116.8 9.0 114 85-239 63-186 (193)
354 3tyt_A Heterogeneous nuclear r 99.5 9.6E-14 3.3E-18 118.2 7.4 76 33-110 122-203 (205)
355 2dnl_A Cytoplasmic polyadenyla 99.4 2.2E-13 7.5E-18 105.0 8.5 76 120-237 7-85 (114)
356 3ue2_A Poly(U)-binding-splicin 99.4 3.8E-13 1.3E-17 104.3 9.6 81 33-113 19-108 (118)
357 2bz2_A Negative elongation fac 99.4 1.7E-13 5.8E-18 106.8 7.5 77 119-242 37-113 (121)
358 2e5i_A Heterogeneous nuclear r 99.4 1.1E-13 3.9E-18 108.1 6.4 76 122-242 26-104 (124)
359 3d2w_A TAR DNA-binding protein 99.4 2E-13 6.9E-18 100.5 7.1 75 120-242 10-86 (89)
360 1wf0_A TDP-43, TAR DNA-binding 99.4 1.8E-13 6.2E-18 100.3 5.1 78 120-243 4-81 (88)
361 2hzc_A Splicing factor U2AF 65 99.4 2.5E-13 8.4E-18 99.1 5.7 71 120-236 5-86 (87)
362 3v4m_A Splicing factor U2AF 65 99.4 1.1E-12 3.7E-17 99.7 7.3 82 121-241 5-98 (105)
363 3u1l_A PRE-mRNA-splicing facto 99.4 8.1E-13 2.8E-17 114.5 7.1 101 97-242 107-231 (240)
364 1jmt_A Splicing factor U2AF 35 99.4 4.8E-13 1.6E-17 101.4 4.9 72 126-237 20-103 (104)
365 2d9o_A DNAJ (HSP40) homolog, s 99.3 6.1E-12 2.1E-16 94.5 10.6 76 34-116 10-92 (100)
366 2dit_A HIV TAT specific factor 99.3 3.8E-12 1.3E-16 97.6 9.7 83 117-242 11-104 (112)
367 3tht_A Alkylated DNA repair pr 99.3 3.1E-12 1.1E-16 116.6 9.8 76 31-112 15-97 (345)
368 3ue2_A Poly(U)-binding-splicin 99.3 1.5E-12 5.1E-17 100.9 5.3 83 120-241 19-110 (118)
369 3s6e_A RNA-binding protein 39; 99.3 1.5E-11 5E-16 94.7 9.7 78 32-113 5-92 (114)
370 3s6e_A RNA-binding protein 39; 99.1 6.7E-11 2.3E-15 90.9 6.5 66 133-241 29-94 (114)
371 2d9o_A DNAJ (HSP40) homolog, s 99.1 7.8E-11 2.7E-15 88.4 6.5 83 103-242 10-92 (100)
372 3tht_A Alkylated DNA repair pr 99.1 8E-11 2.7E-15 107.2 7.0 75 119-238 16-97 (345)
373 1owx_A Lupus LA protein, SS-B, 99.1 8.2E-10 2.8E-14 85.3 10.0 82 27-114 11-96 (121)
374 2dnr_A Synaptojanin-1; RRM dom 99.0 1.1E-09 3.7E-14 79.6 8.5 72 33-113 6-85 (91)
375 3dxb_A Thioredoxin N-terminall 98.9 4.1E-09 1.4E-13 90.3 8.7 68 46-113 141-212 (222)
376 1ufw_A Synaptojanin 2; RNP dom 98.8 4.8E-09 1.6E-13 76.6 5.8 71 33-112 14-93 (95)
377 3dxb_A Thioredoxin N-terminall 98.8 7.9E-09 2.7E-13 88.5 6.1 71 133-242 141-215 (222)
378 1owx_A Lupus LA protein, SS-B, 98.8 9.8E-09 3.4E-13 79.2 5.8 77 118-239 15-95 (121)
379 2dnr_A Synaptojanin-1; RRM dom 98.7 1.6E-08 5.6E-13 73.4 4.9 57 136-240 30-86 (91)
380 2l9w_A U4/U6 snRNA-associated- 98.6 2.9E-07 1E-11 68.6 9.1 75 30-110 17-96 (117)
381 1ufw_A Synaptojanin 2; RNP dom 98.5 8.8E-08 3E-12 69.9 4.7 71 120-238 14-93 (95)
382 2l9w_A U4/U6 snRNA-associated- 98.2 3.5E-06 1.2E-10 62.8 7.6 73 120-237 20-97 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.1 2.5E-05 8.7E-10 57.6 10.2 89 32-134 6-99 (104)
384 1wey_A Calcipressin 1; structu 97.7 0.00011 3.9E-09 54.4 7.3 76 32-113 3-83 (104)
385 1uw4_A UPF3X; nonsense mediate 97.5 0.00035 1.2E-08 50.7 7.5 69 35-103 2-72 (91)
386 1whv_A Poly(A)-specific ribonu 97.5 0.00038 1.3E-08 50.7 7.0 65 24-97 6-70 (100)
387 1wey_A Calcipressin 1; structu 97.1 0.00054 1.9E-08 50.7 4.9 73 121-238 5-82 (104)
388 1wwh_A Nucleoporin 35, nucleop 97.0 0.0053 1.8E-07 46.6 9.0 75 31-113 21-96 (119)
389 2l08_A Regulator of nonsense t 96.7 0.0029 1E-07 46.2 5.4 70 34-103 9-80 (97)
390 3ctr_A Poly(A)-specific ribonu 96.6 0.0024 8.2E-08 46.7 4.6 54 36-97 7-60 (101)
391 1uw4_A UPF3X; nonsense mediate 96.3 0.011 3.6E-07 42.8 6.3 68 123-227 3-70 (91)
392 3p3d_A Nucleoporin 53; structu 95.9 0.01 3.6E-07 45.6 5.1 79 33-113 6-98 (132)
393 3pq1_A Poly(A) RNA polymerase; 95.5 0.0056 1.9E-07 57.5 2.6 56 33-94 52-107 (464)
394 1whv_A Poly(A)-specific ribonu 95.3 0.033 1.1E-06 40.5 5.5 56 120-223 15-70 (100)
395 2dhx_A Poly (ADP-ribose) polym 95.3 0.038 1.3E-06 40.6 5.8 74 121-242 8-86 (104)
396 2l08_A Regulator of nonsense t 95.0 0.048 1.7E-06 39.7 5.6 69 122-227 10-78 (97)
397 1wwh_A Nucleoporin 35, nucleop 94.4 0.097 3.3E-06 39.6 6.4 73 121-240 24-97 (119)
398 3p3d_A Nucleoporin 53; structu 93.2 0.31 1.1E-05 37.4 7.2 38 202-240 62-99 (132)
399 3ctr_A Poly(A)-specific ribonu 93.1 0.044 1.5E-06 40.0 2.2 54 122-223 7-60 (101)
400 3d45_A Poly(A)-specific ribonu 92.3 0.34 1.2E-05 46.1 7.8 65 24-97 430-494 (507)
401 3pq1_A Poly(A) RNA polymerase; 89.5 0.13 4.4E-06 48.3 2.0 57 119-220 51-107 (464)
402 2v8f_C MDIA1, profilin IIA; al 86.7 0.72 2.5E-05 24.1 2.8 7 291-297 12-18 (26)
403 3d45_A Poly(A)-specific ribonu 62.6 12 0.00042 35.3 6.2 56 121-224 440-495 (507)
404 4eyt_A Telomerase associated p 56.5 49 0.0017 23.3 7.7 57 32-96 10-66 (129)
405 2g0c_A ATP-dependent RNA helic 50.6 11 0.00038 25.2 2.8 36 202-238 40-75 (76)
406 3ts2_A Protein LIN-28 homolog 33.8 8.3 0.00028 30.0 -0.1 28 49-84 2-29 (148)
407 1xn9_A 30S ribosomal protein S 29.0 1.2E+02 0.0042 21.7 5.5 48 44-92 28-80 (101)
408 1ywx_A 30S ribosomal protein S 25.0 1.2E+02 0.0042 21.7 4.9 47 44-91 28-79 (102)
409 2bn5_B U1 small nuclear ribonu 24.4 57 0.002 16.6 2.1 11 288-298 8-18 (26)
410 2v94_A RPS24, 30S ribosomal pr 23.1 1.5E+02 0.005 21.6 5.0 48 44-92 37-89 (107)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3.5e-37 Score=265.44 Aligned_cols=171 Identities=34% Similarity=0.605 Sum_probs=153.2
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||||||.++|+++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|.+|++.+++..+.|+.|++.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcccc-ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccC
Q psy3016 110 KASSHQKN-LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNL 188 (305)
Q Consensus 110 ~~~~~~~~-~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 188 (305)
++...... .....+|||+||+..+|+++|+++|+.||.|..+
T Consensus 91 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~------------------------------------- 133 (213)
T 4f02_A 91 WSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC------------------------------------- 133 (213)
T ss_dssp ECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEE-------------------------------------
T ss_pred cccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEE-------------------------------------
Confidence 98765432 2345789999999999999999999999999887
Q ss_pred CCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 189 ~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
.++.|. +.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|+..+.
T Consensus 134 --~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 134 --KVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp --EEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred --EeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 566663 4579999999999999999999999999999999999997654
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-35 Score=239.85 Aligned_cols=164 Identities=29% Similarity=0.596 Sum_probs=152.2
Q ss_pred ceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCCc
Q psy3016 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSH 114 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~~ 114 (305)
++|||+|||.++|+++|+++|+.||.|.+|+++.++ ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999987 5779999999999999999999999999999999999998765
Q ss_pred cc-cccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcc
Q psy3016 115 QK-NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIM 193 (305)
Q Consensus 115 ~~-~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 193 (305)
.. ......+|||+|||..+|+++|+++|+.||.|..+ .++
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~---------------------------------------~i~ 120 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSG---------------------------------------HVM 120 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEE---------------------------------------EEE
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEE---------------------------------------EEE
Confidence 43 33456899999999999999999999999999877 678
Q ss_pred cCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEee
Q psy3016 194 RDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238 (305)
Q Consensus 194 ~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 238 (305)
.|..++.++|||||+|.+.++|.+|+..|||..++|+.|+|+|++
T Consensus 121 ~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 121 WDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp ECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred ecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 888889999999999999999999999999999999999999985
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=7e-35 Score=240.50 Aligned_cols=165 Identities=28% Similarity=0.495 Sum_probs=154.0
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
+.++|||+|||.++|+++|+++|+.||.|.+|+++.+..+|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998889999999999999999999999999999999999999988
Q ss_pred CccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCc
Q psy3016 113 SHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192 (305)
Q Consensus 113 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 192 (305)
+.... ...++|||+|||..+++++|+++|+.||.|..+ .+
T Consensus 82 ~~~~~-~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~---------------------------------------~i 121 (168)
T 1b7f_A 82 PGGES-IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQK---------------------------------------NI 121 (168)
T ss_dssp CCSST-TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEE---------------------------------------EE
T ss_pred CCccc-CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEE---------------------------------------EE
Confidence 76543 346789999999999999999999999999876 67
Q ss_pred ccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecC--eeeEEEEe
Q psy3016 193 MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCN--RPISVSYA 237 (305)
Q Consensus 193 ~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g--~~l~v~~a 237 (305)
+.+..++.++|||||+|.+.++|.+|+..|||..+.| ++|+|+||
T Consensus 122 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 122 LRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 7887789999999999999999999999999999977 99999986
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.3e-34 Score=238.26 Aligned_cols=165 Identities=27% Similarity=0.481 Sum_probs=152.7
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
+.++|||+|||.++|+++|+++|+.||.|.+++++.+..+|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999998889999999999999999999999999999999999999988
Q ss_pred CccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCc
Q psy3016 113 SHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192 (305)
Q Consensus 113 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 192 (305)
+.... ....+|||+|||..+++++|+++|+.||.|..+ .+
T Consensus 81 ~~~~~-~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~---------------------------------------~i 120 (167)
T 1fxl_A 81 PSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIITS---------------------------------------RI 120 (167)
T ss_dssp CCCGG-GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEE---------------------------------------EE
T ss_pred CCccc-CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEE---------------------------------------EE
Confidence 66533 346789999999999999999999999999876 67
Q ss_pred ccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCee--eEEEEe
Q psy3016 193 MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRP--ISVSYA 237 (305)
Q Consensus 193 ~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~--l~v~~a 237 (305)
+.+..+|.++|||||+|.+.++|.+|++.|||..+.|+. |+|+||
T Consensus 121 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 121 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 778778999999999999999999999999999999975 888885
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=9.2e-35 Score=245.87 Aligned_cols=173 Identities=23% Similarity=0.420 Sum_probs=152.1
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||.++|+++|+++|+.||.|.+|+++.+..++.++|||||+|.+.++|.+|++. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 445678999999999999999999999999999999999988899999999999999999999985 9999999999999
Q ss_pred eCCCccccc-----cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeE
Q psy3016 110 KASSHQKNL-----DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIF 184 (305)
Q Consensus 110 ~~~~~~~~~-----~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (305)
++....... ...++|||+|||.++|+++|+++|+.||.|..+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v--------------------------------- 134 (196)
T 1l3k_A 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI--------------------------------- 134 (196)
T ss_dssp ECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEE---------------------------------
T ss_pred cccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEE---------------------------------
Confidence 987654322 235789999999999999999999999999887
Q ss_pred eccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 185 IGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 185 ~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
.++.|..++.++|||||+|.+.++|.+|+.. ++..++|+.|.|.|+.++...
T Consensus 135 ------~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 135 ------EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp ------EEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred ------EEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 6788888899999999999999999999986 899999999999999887654
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2.4e-34 Score=246.96 Aligned_cols=170 Identities=27% Similarity=0.478 Sum_probs=154.0
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
...++|||+|||.++|+++|+++|+.||.|.+|+++.+..++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34679999999999999999999999999999999999888999999999999999999999999999999999999988
Q ss_pred CCcccc----------ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcc
Q psy3016 112 SSHQKN----------LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGA 181 (305)
Q Consensus 112 ~~~~~~----------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (305)
...... ....++|||+||+..+|+++|+++|+.||.|..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v------------------------------ 155 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSA------------------------------ 155 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEE------------------------------
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEE------------------------------
Confidence 765422 2345799999999999999999999999999887
Q ss_pred eeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 182 NIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 182 ~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
.++.+..++.++|||||+|.+.++|.+|+..|||..|+|+.|+|.|+..+
T Consensus 156 ---------~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 156 ---------TLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp ---------EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred ---------EEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence 67888888999999999999999999999999999999999999998654
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.6e-34 Score=238.22 Aligned_cols=165 Identities=30% Similarity=0.511 Sum_probs=151.9
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
.+++|||+|||.++|+++|+++|+.||.|.+|+++.+..+|.++|||||+|.+.++|.+|++ ++..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999998889999999999999999999999 4689999999999987
Q ss_pred CccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCc
Q psy3016 113 SHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192 (305)
Q Consensus 113 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 192 (305)
..... ....+|||+|||..+|+++|+++|+.||.|..+ .+
T Consensus 80 ~~~~~-~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~---------------------------------------~i 119 (167)
T 2cjk_A 80 PRDEQ-DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDA---------------------------------------QL 119 (167)
T ss_dssp CHHHH-HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEE---------------------------------------EC
T ss_pred chhhc-cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEE---------------------------------------EE
Confidence 65432 346789999999999999999999999999877 67
Q ss_pred ccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 193 MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 193 ~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
+.|..+|.++|||||+|.+.++|.+|++ +|+..++|+.|+|.|+.++
T Consensus 120 ~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 120 MLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred EEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 8887889999999999999999999998 8999999999999999765
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=7.1e-34 Score=235.80 Aligned_cols=165 Identities=28% Similarity=0.477 Sum_probs=151.2
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCC--CcceEEEEEEcCHHHHHHHHHHhcCceeC---CeeeE
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQ--THQGYGFIEFMGEEDADYAIKIMNMIKLY---GKPIR 107 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~--~~~g~afV~f~~~e~A~~Ai~~l~g~~~~---g~~l~ 107 (305)
..++|||+|||.++|+++|+++|+.||.|.+|+++.+..++ .++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998776 89999999999999999999999998776 68899
Q ss_pred EeeCCCccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEecc
Q psy3016 108 VNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGN 187 (305)
Q Consensus 108 v~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (305)
+.++..........++|||+|||..+|+++|+++|+.||.|..+
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v------------------------------------ 125 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEEC------------------------------------ 125 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEE------------------------------------
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEE------------------------------------
Confidence 98888777666678899999999999999999999999999877
Q ss_pred CCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeec---CeeeEEEEe
Q psy3016 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLC---NRPISVSYA 237 (305)
Q Consensus 188 l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~---g~~l~v~~a 237 (305)
.++.+. +|.++|||||+|.+.++|.+|+..|||..+. +++|+|.||
T Consensus 126 ---~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 126 ---RILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp ---EEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred ---EEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 567774 4899999999999999999999999998775 499999997
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=3.8e-32 Score=225.06 Aligned_cols=159 Identities=24% Similarity=0.501 Sum_probs=144.7
Q ss_pred CCceEEEcCCCccccHHHHHHHhccC----C-------CeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCcee
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQS----G-------PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKL 101 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~ 101 (305)
..++|||+|||.++|+++|+++|+.| | .|.++++.. ++|||||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 7 788888744 4699999999999999999 7999999
Q ss_pred CCeeeEEeeCCCccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcc
Q psy3016 102 YGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGA 181 (305)
Q Consensus 102 ~g~~l~v~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (305)
.|+.|.|.++...... ....+|||+|||..+|+++|+++|+.||.|..+
T Consensus 76 ~g~~i~v~~~~~~~~~-~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v------------------------------ 124 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPL-PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAF------------------------------ 124 (172)
T ss_dssp TTEECEEECCSSCCCC-TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEE------------------------------
T ss_pred cCceeeecCCcccCCC-CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEE------------------------------
Confidence 9999999998765432 336889999999999999999999999999877
Q ss_pred eeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEee
Q psy3016 182 NIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238 (305)
Q Consensus 182 ~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 238 (305)
.++.+..+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.||.
T Consensus 125 ---------~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 125 ---------NLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp ---------EEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ---------EEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 678887789999999999999999999999999999999999999973
No 10
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=5e-32 Score=242.60 Aligned_cols=170 Identities=21% Similarity=0.256 Sum_probs=156.3
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
..++|||+|||..+|+++|+++|+.||.|..++++.+..+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 35799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred Cccccc--cccccccccCCCchh-cHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCC
Q psy3016 113 SHQKNL--DVGANIFIGNLDPEV-DEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLD 189 (305)
Q Consensus 113 ~~~~~~--~~~~~l~v~nl~~~~-t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 189 (305)
...... ...++|||+|||..+ |+++|+++|+.||.|..+
T Consensus 174 ~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v-------------------------------------- 215 (284)
T 3smz_A 174 AGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFC-------------------------------------- 215 (284)
T ss_dssp GGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEE--------------------------------------
T ss_pred CCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEE--------------------------------------
Confidence 765432 356889999999995 999999999999999877
Q ss_pred CCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 190 ~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
.++.+. +|.++|||||+|.+.++|.+|+..|||..++|+.|+|.|+.++..
T Consensus 216 -~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 216 -QLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp -EEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred -EEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 567775 689999999999999999999999999999999999999977654
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.98 E-value=4.2e-32 Score=229.83 Aligned_cols=164 Identities=24% Similarity=0.483 Sum_probs=145.7
Q ss_pred CCceEEEcCCCccccHHHHHHHhccC----C-------CeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCcee
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQS----G-------PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKL 101 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~ 101 (305)
..++|||+|||.++|+++|+++|+.| | .|.++++ +.++|||||+|.+.++|.+|+ .||+..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 47899999999999999999999999 5 6777776 345799999999999999999 7999999
Q ss_pred CCeeeEEeeCCCcccc-------------------ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcC
Q psy3016 102 YGKPIRVNKASSHQKN-------------------LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYG 162 (305)
Q Consensus 102 ~g~~l~v~~~~~~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~ 162 (305)
.|+.|.|.++...... ....++|||+||+..+++++|+++|+.||.|..+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~----------- 144 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAF----------- 144 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEE-----------
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEE-----------
Confidence 9999999998754211 1345899999999999999999999999999876
Q ss_pred cceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 163 KPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
.++.+..++.++|||||+|.+.++|.+|+..|||..++|+.|+|.|+.++..
T Consensus 145 ----------------------------~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 145 ----------------------------NLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp ----------------------------EEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred ----------------------------EEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 6788877899999999999999999999999999999999999999977643
No 12
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.98 E-value=7.7e-33 Score=230.20 Aligned_cols=166 Identities=20% Similarity=0.347 Sum_probs=146.3
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
......++|||+|||.++|+++|+++|+.||.+.. .++.+..++.++|||||+|.+.++|.+|++ |++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 35567899999999999999999999999998766 334444567899999999999999999995 9999999999999
Q ss_pred eeCCCcccc-ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEecc
Q psy3016 109 NKASSHQKN-LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGN 187 (305)
Q Consensus 109 ~~~~~~~~~-~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (305)
.++...... ....++|||+|||..+|+++|+++|+.||.|..
T Consensus 86 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~------------------------------------- 128 (175)
T 1fje_B 86 EKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRL------------------------------------- 128 (175)
T ss_dssp ECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEE-------------------------------------
T ss_pred ecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEE-------------------------------------
Confidence 998865433 335689999999999999999999999998863
Q ss_pred CCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 188 l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
+ ..++.++|||||+|.+.++|.+|+..|||..++|+.|+|+|+.++
T Consensus 129 -----~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 129 -----V--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp -----E--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred -----e--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 2 356889999999999999999999999999999999999999765
No 13
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.98 E-value=8.1e-32 Score=230.64 Aligned_cols=159 Identities=17% Similarity=0.254 Sum_probs=137.3
Q ss_pred CCceEEEcCCC-ccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 33 GDATIYVGGLD-DKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 33 ~~~~l~V~nLp-~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
..++|||+||| ..+|+++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 89999999999999999999999875 3699999999999999999999999999999999988
Q ss_pred CCcccc------------------------------------ccccccccccCCCchhcHHHHHHHHhhcCcc--cchhh
Q psy3016 112 SSHQKN------------------------------------LDVGANIFIGNLDPEVDEKLLYDTFSAFGVI--LQTPK 153 (305)
Q Consensus 112 ~~~~~~------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v--~~~~~ 153 (305)
...... ....++|||+|||.++|+++|+++|+.||.| ..+
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v-- 155 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSV-- 155 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEE--
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEE--
Confidence 632100 0123579999999999999999999999998 544
Q ss_pred hhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCe---
Q psy3016 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNR--- 230 (305)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~--- 230 (305)
+++.+. +..+|+|||+|++.++|.+|+..|||..+.|+
T Consensus 156 -------------------------------------~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~ 196 (205)
T 3tyt_A 156 -------------------------------------KVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGP 196 (205)
T ss_dssp -------------------------------------EECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSS
T ss_pred -------------------------------------EEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCC
Confidence 344443 56679999999999999999999999999776
Q ss_pred -eeEEEEe
Q psy3016 231 -PISVSYA 237 (305)
Q Consensus 231 -~l~v~~a 237 (305)
++.|.||
T Consensus 197 ~p~~vk~~ 204 (205)
T 3tyt_A 197 YPYTLKLC 204 (205)
T ss_dssp SCEECEEE
T ss_pred cceEEEec
Confidence 6777776
No 14
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=4.9e-31 Score=235.90 Aligned_cols=162 Identities=22% Similarity=0.410 Sum_probs=142.9
Q ss_pred cCCCCceEEEcCCCccccHHHHH----HHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCee
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMW----ELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKP 105 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~ 105 (305)
.....++|||+|||.++|+++|+ ++|+.||.|.+|++++ +++++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 44568899999999999999966 8999999999999986 5678999999999999999999999999999999
Q ss_pred eEEeeCCCccc---------------------------------------------------------------------
Q psy3016 106 IRVNKASSHQK--------------------------------------------------------------------- 116 (305)
Q Consensus 106 l~v~~~~~~~~--------------------------------------------------------------------- 116 (305)
|+|.++.....
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 99998865331
Q ss_pred -----------------------------------------cccccccccccCCCchhcHHHHHHHHhhcCcccchhhhh
Q psy3016 117 -----------------------------------------NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155 (305)
Q Consensus 117 -----------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~ 155 (305)
.....++|||+||+..+|+++|+++|+.||.|..+
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v---- 237 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEV---- 237 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEE----
Confidence 01134679999999999999999999999999876
Q ss_pred hhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeec-CeeeEE
Q psy3016 156 NMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLC-NRPISV 234 (305)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~-g~~l~v 234 (305)
.++.+. +|||||+|.+.++|.+|+..|||..+. |+.|+|
T Consensus 238 -----------------------------------~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 238 -----------------------------------RLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred -----------------------------------EEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 344331 589999999999999999999999999 999999
Q ss_pred EEee
Q psy3016 235 SYAF 238 (305)
Q Consensus 235 ~~a~ 238 (305)
+|++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9985
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=3.2e-31 Score=238.29 Aligned_cols=167 Identities=25% Similarity=0.429 Sum_probs=145.0
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCC-CeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSG-PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
..++|||+|||..+|+++|+++|+.|| .|..|.++.+.. +.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 999999999874 788999999999999999999999999999999999998
Q ss_pred CCcccc------ccccccccccCCCch-hcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeE
Q psy3016 112 SSHQKN------LDVGANIFIGNLDPE-VDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIF 184 (305)
Q Consensus 112 ~~~~~~------~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (305)
.+.... .....+|||+|||.. +|+++|+++|+.||.|..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v--------------------------------- 241 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKI--------------------------------- 241 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEE---------------------------------
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEE---------------------------------
Confidence 865432 234688999999999 9999999999999999877
Q ss_pred eccCCCCcccCCC-CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 185 IGNLDPEIMRDPD-TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 185 ~~~l~~~i~~d~~-~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
.++.+.. +|.++|||||+|.+.++|.+|+ .|||..|+|+.|+|.|+.++
T Consensus 242 ------~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 242 ------NIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp ------ECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred ------EEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 5677765 5899999999999999999999 99999999999999999765
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=7.4e-31 Score=228.29 Aligned_cols=166 Identities=24% Similarity=0.385 Sum_probs=144.8
Q ss_pred CCCCcCCCCceEEEcCCCc-cccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCe
Q psy3016 26 GGGESGDGDATIYVGGLDD-KVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGK 104 (305)
Q Consensus 26 ~~~~~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~ 104 (305)
.+.......++|||+|||. .+|+++|+++|+.||.|.+|+++.++ +|||||+|.+.++|++|++.|++..+.|+
T Consensus 26 ~p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 100 (229)
T 2adc_A 26 IPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGK 100 (229)
T ss_dssp CGGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSS
T ss_pred CCCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 3445566789999999999 99999999999999999999998874 68999999999999999999999999999
Q ss_pred eeEEeeCCCcccc----------------------------------ccccccccccCCCchhcHHHHHHHHhhcC-ccc
Q psy3016 105 PIRVNKASSHQKN----------------------------------LDVGANIFIGNLDPEVDEKLLYDTFSAFG-VIL 149 (305)
Q Consensus 105 ~l~v~~~~~~~~~----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g-~v~ 149 (305)
.|.|.++...... ....++|||+||+..+++++|+++|+.|| .|.
T Consensus 101 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~ 180 (229)
T 2adc_A 101 PIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVK 180 (229)
T ss_dssp BCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEE
T ss_pred EEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCee
Confidence 9999988743100 11257899999999999999999999999 888
Q ss_pred chhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeec-
Q psy3016 150 QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLC- 228 (305)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~- 228 (305)
.+ .++.+ .+|||||+|.+.++|.+|+..|||..+.
T Consensus 181 ~v---------------------------------------~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~ 216 (229)
T 2adc_A 181 GF---------------------------------------KFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGE 216 (229)
T ss_dssp EE---------------------------------------EECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred EE---------------------------------------EEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCC
Confidence 76 33322 3789999999999999999999999999
Q ss_pred CeeeEEEEeeec
Q psy3016 229 NRPISVSYAFKK 240 (305)
Q Consensus 229 g~~l~v~~a~~~ 240 (305)
|+.|+|+|++++
T Consensus 217 g~~l~v~~a~~~ 228 (229)
T 2adc_A 217 NHHLRVSFSKST 228 (229)
T ss_dssp SCBCEEEECSSC
T ss_pred CCeEEEEEecCC
Confidence 999999998653
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=8.1e-31 Score=222.49 Aligned_cols=159 Identities=24% Similarity=0.391 Sum_probs=140.6
Q ss_pred CCceEEEcCCCc-cccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 33 GDATIYVGGLDD-KVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 33 ~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
++++|||+|||. .+|+++|+++|+.||.|.+|+++.++ +|||||+|.+.++|.+|++.|+|..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 368999999999 99999999999999999999998874 689999999999999999999999999999999988
Q ss_pred CCcccc----------------------------------ccccccccccCCCchhcHHHHHHHHhhcC-cccchhhhhh
Q psy3016 112 SSHQKN----------------------------------LDVGANIFIGNLDPEVDEKLLYDTFSAFG-VILQTPKIMN 156 (305)
Q Consensus 112 ~~~~~~----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g-~v~~~~~~~~ 156 (305)
...... ....++|||+||+..+++++|+++|+.|| .|..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v----- 151 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGF----- 151 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEE-----
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEE-----
Confidence 643110 11267899999999999999999999999 88876
Q ss_pred hhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeec-CeeeEEE
Q psy3016 157 MIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLC-NRPISVS 235 (305)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~-g~~l~v~ 235 (305)
.++.+ .+|+|||+|.+.++|.+|+..|||..++ |+.|+|.
T Consensus 152 ----------------------------------~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 152 ----------------------------------KFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp ----------------------------------EESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred ----------------------------------EEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 33332 3789999999999999999999999999 9999999
Q ss_pred Eeeec
Q psy3016 236 YAFKK 240 (305)
Q Consensus 236 ~a~~~ 240 (305)
|++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98653
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=9e-30 Score=227.94 Aligned_cols=158 Identities=19% Similarity=0.336 Sum_probs=145.9
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEee
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~ 110 (305)
....++|||+|||.++|+++|+++|+.|| |.+|++ +.++|||||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 91 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL 91 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe
Confidence 34578999999999999999999999999 999998 34679999999999999999999999999999999998
Q ss_pred CCCccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCC
Q psy3016 111 ASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 190 (305)
Q Consensus 111 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 190 (305)
+. ...+|||+|||..+|+++|+++|+.||.|..+
T Consensus 92 ~~-------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~--------------------------------------- 125 (284)
T 3smz_A 92 QP-------TDALLCVANLPPSLTQQQFEELVRPFGSLERC--------------------------------------- 125 (284)
T ss_dssp CC-------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEE---------------------------------------
T ss_pred cC-------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEE---------------------------------------
Confidence 54 24689999999999999999999999999876
Q ss_pred CcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 191 ~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
.++.|..+|.++|||||+|.+.++|.+|+..|||..+.|+.|.|.|+..+.
T Consensus 126 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 126 FLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred EEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 678888889999999999999999999999999999999999999997654
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=6.1e-30 Score=226.84 Aligned_cols=159 Identities=26% Similarity=0.462 Sum_probs=143.6
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEee
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~ 110 (305)
....++|||+|||.++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.|+|..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 355679999999999999999999999999999999653 59999999999999999999999999999999999
Q ss_pred CCCccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCC
Q psy3016 111 ASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 190 (305)
Q Consensus 111 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 190 (305)
+.. ..+|||+||+..+|+++|+++|+.||.|..+
T Consensus 93 a~~-------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v--------------------------------------- 126 (261)
T 3sde_A 93 ATH-------GAALTVKNLSPVVSNELLEQAFSQFGPVEKA--------------------------------------- 126 (261)
T ss_dssp CCC-------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEE---------------------------------------
T ss_pred ccc-------CCcccccCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------
Confidence 874 4689999999999999999999999999887
Q ss_pred CcccCCCCCCccceEEEEeCChHHHHHHHHHhcC-eeec---CeeeEEEEeeecCC
Q psy3016 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHG-QYLC---NRPISVSYAFKKDS 242 (305)
Q Consensus 191 ~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~-~~~~---g~~l~v~~a~~~~~ 242 (305)
.++.| .+|.++|||||+|.+.++|.+|+..||+ ..+. +++|.|.++.....
T Consensus 127 ~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 127 VVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp EEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred EeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 66777 5799999999999999999999999955 4444 99999999976543
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=2e-29 Score=226.58 Aligned_cols=163 Identities=17% Similarity=0.240 Sum_probs=138.8
Q ss_pred CCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
.......++|||+|||..+|+++|+++|+.||.|.+|+++.+..+ ++|||||+|.+.++|.+|++ +++..+.|+.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~ 111 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEII 111 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEE
Confidence 335567889999999999999999999999999999999998633 57999999999999999996 999999999999
Q ss_pred EeeCCCccccccccccccccCCCchhcHHHHHHHHhhcC-cccchhhhhhhhhhcCcceeeecCccccccCCCcceeEec
Q psy3016 108 VNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFG-VILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIG 186 (305)
Q Consensus 108 v~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (305)
|.++. .++|||+|||..+++++|+++|+.|| .|..+
T Consensus 112 v~~~~--------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v----------------------------------- 148 (292)
T 2ghp_A 112 VSHLT--------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSI----------------------------------- 148 (292)
T ss_dssp EEECC--------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEE-----------------------------------
T ss_pred EEECC--------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEE-----------------------------------
Confidence 99863 57899999999999999999999999 99876
Q ss_pred cCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 187 NLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 187 ~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
.++.+.. +.++|||||+|.+.++|.+|+..|||..+.|+.|.|.|+.+..
T Consensus 149 ----~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 149 ----RLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp ----ECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred ----EEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 5666654 7889999999999999999999999999999999999987654
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=2.9e-23 Score=161.19 Aligned_cols=103 Identities=24% Similarity=0.468 Sum_probs=75.5
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
+..+|||+|||.++|+++|+++|+.||.|.+|+|+.+. +.++|||||+|.+.++|++|++.|++..+.|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 46789999999999999999999999999999999986 4589999999999999999999999999999999999987
Q ss_pred Cccccc-------cccccccccCCCchhcHHH
Q psy3016 113 SHQKNL-------DVGANIFIGNLDPEVDEKL 137 (305)
Q Consensus 113 ~~~~~~-------~~~~~l~v~nl~~~~t~~~ 137 (305)
.+.... ....+|||+||++++|++-
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccccc
Confidence 654322 2346799999999999863
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=9.5e-23 Score=166.84 Aligned_cols=139 Identities=20% Similarity=0.244 Sum_probs=111.8
Q ss_pred EEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe-------eCCC-----ccccccccccccccCCC
Q psy3016 63 NVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN-------KASS-----HQKNLDVGANIFIGNLD 130 (305)
Q Consensus 63 ~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~-------~~~~-----~~~~~~~~~~l~v~nl~ 130 (305)
.++|+.+. ..++|||||+|.+.++|++|++.+++....+..+.+. .... .........+|||+||+
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 45666665 3689999999999999999999887533222222222 1111 11122346899999999
Q ss_pred chhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeC
Q psy3016 131 PEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYA 210 (305)
Q Consensus 131 ~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~ 210 (305)
.++|+++|+++|+.||.|..+ .++.|..+|.++|||||+|.
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~---------------------------------------~i~~~~~~g~~~g~afV~f~ 120 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDV---------------------------------------YIPRDRYTKESRGFAFVRFH 120 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEE---------------------------------------ECCCCSSCTTSCCEEEEEES
T ss_pred CCCCHHHHHHHHHhcCCeEEE---------------------------------------EEeecCCCCccceEEEEEEC
Confidence 999999999999999999877 67888888999999999999
Q ss_pred ChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 211 SFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 211 ~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
+.++|.+|+..|||..+.|+.|+|.|+..+..
T Consensus 121 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 121 DKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp BHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999999999977643
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=2.4e-21 Score=146.37 Aligned_cols=81 Identities=27% Similarity=0.490 Sum_probs=77.8
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
..++|||+|||.++|+++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|+++.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45789999999999999999999999999999999999899999999999999999999999999999999999999986
Q ss_pred C
Q psy3016 113 S 113 (305)
Q Consensus 113 ~ 113 (305)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=4.9e-21 Score=155.45 Aligned_cols=123 Identities=19% Similarity=0.333 Sum_probs=108.5
Q ss_pred CCcceEEEEEEcCHHHHHHHHHHh-cCceeCCeeeEEeeCCCcc---------------ccccccccccccCCCchhcHH
Q psy3016 73 QTHQGYGFIEFMGEEDADYAIKIM-NMIKLYGKPIRVNKASSHQ---------------KNLDVGANIFIGNLDPEVDEK 136 (305)
Q Consensus 73 ~~~~g~afV~f~~~e~A~~Ai~~l-~g~~~~g~~l~v~~~~~~~---------------~~~~~~~~l~v~nl~~~~t~~ 136 (305)
...+|+++|+|.+.++|++|++.+ ||..+.| .+.+.++.... ......++|||+||+.++|++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 467899999999999999999999 9999999 99999876521 122346899999999999999
Q ss_pred HHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHH
Q psy3016 137 LLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASD 216 (305)
Q Consensus 137 ~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~ 216 (305)
+|+++|+.||.|..+ .++.| ++|||||+|.+.++|.
T Consensus 89 ~l~~~F~~~G~i~~v---------------------------------------~i~~~-----~~g~afV~f~~~~~a~ 124 (150)
T 2i2y_A 89 ELERAFGYYGPLRSV---------------------------------------WVARN-----PPGFAFVEFEDPRDAA 124 (150)
T ss_dssp HHHHHHHHHSCEEEE---------------------------------------EECSS-----SCSEEEEEESSHHHHH
T ss_pred HHHHHHHhhCCEEEE---------------------------------------EEeeC-----CCcEEEEEECCHHHHH
Confidence 999999999999876 44544 5899999999999999
Q ss_pred HHHHHhcCeeecCeeeEEEEeeec
Q psy3016 217 ASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 217 ~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
+|+..|||..+.|+.|+|.|+.++
T Consensus 125 ~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 125 DAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999999998765
No 25
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=142.97 Aligned_cols=84 Identities=20% Similarity=0.251 Sum_probs=79.6
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
...++|||+||+..+|+++|+++|++||.|.+|+|+.+..+++++|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred CCcc
Q psy3016 112 SSHQ 115 (305)
Q Consensus 112 ~~~~ 115 (305)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7544
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=140.45 Aligned_cols=84 Identities=14% Similarity=0.291 Sum_probs=77.5
Q ss_pred CceEEEcCCCccccHHHHHHHhccCC-CeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhc-CceeCCeeeEEeeC
Q psy3016 34 DATIYVGGLDDKVSETLMWELFVQSG-PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMN-MIKLYGKPIRVNKA 111 (305)
Q Consensus 34 ~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~-g~~~~g~~l~v~~~ 111 (305)
+.+|||+|||.++|+++|+++|+.|| .|.+|+|++++.++.++|||||+|.+.++|.+|++.++ +..+.|+.|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999999774 67899999999999
Q ss_pred CCcccc
Q psy3016 112 SSHQKN 117 (305)
Q Consensus 112 ~~~~~~ 117 (305)
.++.+.
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876543
No 27
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=137.21 Aligned_cols=92 Identities=29% Similarity=0.385 Sum_probs=84.6
Q ss_pred CCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCee
Q psy3016 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKP 105 (305)
Q Consensus 26 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~ 105 (305)
.+.......++|||+|||..+|+++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|.+|++.||+..+.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 7 GPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp CSCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 34445667899999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred eEEeeCCCcccc
Q psy3016 106 IRVNKASSHQKN 117 (305)
Q Consensus 106 l~v~~~~~~~~~ 117 (305)
|+|.++..+...
T Consensus 87 l~v~~a~~~~~~ 98 (103)
T 2cq0_A 87 LNVEWAKPSTNS 98 (103)
T ss_dssp CEEEESSCCCCS
T ss_pred EEEEECCCCCCC
Confidence 999999876543
No 28
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=2.2e-19 Score=130.61 Aligned_cols=82 Identities=28% Similarity=0.493 Sum_probs=78.0
Q ss_pred CceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCC
Q psy3016 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS 113 (305)
Q Consensus 34 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~ 113 (305)
.++|||+|||..+|+++|+++|+.||.|.++.++.+..++.++|||||+|.+.++|++|++.|||..+.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988899999999999999999999999999999999999999886
Q ss_pred cc
Q psy3016 114 HQ 115 (305)
Q Consensus 114 ~~ 115 (305)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 29
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=1.5e-19 Score=132.14 Aligned_cols=83 Identities=36% Similarity=0.661 Sum_probs=78.4
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||.++++++|+++|+.||.|.+|.++.+..++.++|||||+|.+.++|.+|++.|||..+.|+.|+|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eCC
Q psy3016 110 KAS 112 (305)
Q Consensus 110 ~~~ 112 (305)
++.
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 874
No 30
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=132.70 Aligned_cols=83 Identities=29% Similarity=0.470 Sum_probs=76.9
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
...++|||+|||..+|+++|+++|+.||.|.+|+++.+..++.++|||||+|.+.++|++|++.||+..+.|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45789999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred CCc
Q psy3016 112 SSH 114 (305)
Q Consensus 112 ~~~ 114 (305)
..+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 31
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.81 E-value=1.3e-19 Score=140.31 Aligned_cols=106 Identities=15% Similarity=0.284 Sum_probs=95.5
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEee
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~ 110 (305)
....++|||+|||..+|+++|+++|+.||.|.+|.++.+ +.++|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999876 35689999999999999999999999999999999999
Q ss_pred CCCccccccccccccccCCCchhcHHHHHHHHhhcCcc
Q psy3016 111 ASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148 (305)
Q Consensus 111 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v 148 (305)
+.+.... .+++...+++++.++|+.||.-
T Consensus 82 a~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~ 110 (115)
T 3lqv_A 82 YNANRAF---------QKMDTKKKEEQLKLLKEKYGIN 110 (115)
T ss_dssp CCHHHHT---------TTSCHHHHHHHHHHHHHHHCCC
T ss_pred ecCChhh---------hhhhHhHhHHHHHHHHHHhCCC
Confidence 9865533 5778899999999999999864
No 32
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.81 E-value=5.3e-19 Score=136.81 Aligned_cols=91 Identities=26% Similarity=0.404 Sum_probs=83.7
Q ss_pred CCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
.......++|||+|||..+|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33556788999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EeeCCCccccc
Q psy3016 108 VNKASSHQKNL 118 (305)
Q Consensus 108 v~~~~~~~~~~ 118 (305)
|.++..+....
T Consensus 89 V~~a~~~~~~~ 99 (115)
T 2dgo_A 89 TNWATRKPPAP 99 (115)
T ss_dssp EEESSCCCCCS
T ss_pred EEEccCCCCCC
Confidence 99998765443
No 33
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-19 Score=136.37 Aligned_cols=91 Identities=76% Similarity=1.231 Sum_probs=84.2
Q ss_pred CCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeee
Q psy3016 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPI 106 (305)
Q Consensus 27 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l 106 (305)
+.......++|||+|||..+|+++|+++|+.||.|..|+++.+..++.++|||||+|.+.++|.+|++.|++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34455678899999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEeeCCCcccc
Q psy3016 107 RVNKASSHQKN 117 (305)
Q Consensus 107 ~v~~~~~~~~~ 117 (305)
+|.++......
T Consensus 88 ~v~~a~~~~~~ 98 (105)
T 1x5u_A 88 RVNKASAHNKN 98 (105)
T ss_dssp EEEETTTTSCC
T ss_pred EEEECCCCCcC
Confidence 99999876544
No 34
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.6e-19 Score=134.72 Aligned_cols=88 Identities=25% Similarity=0.410 Sum_probs=82.2
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|+++|+.||.|.+|+++.+..++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eCCCcccc
Q psy3016 110 KASSHQKN 117 (305)
Q Consensus 110 ~~~~~~~~ 117 (305)
++..+...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99876543
No 35
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=8.7e-20 Score=136.58 Aligned_cols=84 Identities=24% Similarity=0.352 Sum_probs=77.1
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCC--eEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCc----eeCC
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGP--VVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMI----KLYG 103 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~--i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~----~~~g 103 (305)
....-.||||+|||+.+|+++|+++|++||. |.+|++++|+.+|.++|||||+|.+.++|.+|++.||+. .+.|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3455679999999999999999999999995 679999999999999999999999999999999999986 5899
Q ss_pred eeeEEeeCCC
Q psy3016 104 KPIRVNKASS 113 (305)
Q Consensus 104 ~~l~v~~~~~ 113 (305)
|.|.|+++..
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999874
No 36
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=133.31 Aligned_cols=86 Identities=29% Similarity=0.421 Sum_probs=80.5
Q ss_pred CCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
.......++|||+|||..+|+++|+++|+.||.|..|+++.+..++.++|||||+|.+.++|.+|++.||+..+.|+.|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EeeCCC
Q psy3016 108 VNKASS 113 (305)
Q Consensus 108 v~~~~~ 113 (305)
|+++..
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999864
No 37
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=132.49 Aligned_cols=84 Identities=26% Similarity=0.478 Sum_probs=79.1
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
......++|||+|||..+++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.||+..+.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34556789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eeCC
Q psy3016 109 NKAS 112 (305)
Q Consensus 109 ~~~~ 112 (305)
++++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 38
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.1e-19 Score=133.44 Aligned_cols=85 Identities=18% Similarity=0.319 Sum_probs=79.9
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|+++|+.||.|.+|.++.+. ++.++|||||+|.+.++|.+|++.||+..+.|+.|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred eCCCcc
Q psy3016 110 KASSHQ 115 (305)
Q Consensus 110 ~~~~~~ 115 (305)
++.++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 998754
No 39
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=133.91 Aligned_cols=88 Identities=33% Similarity=0.561 Sum_probs=81.7
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
......++|||+|||..+|+++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++ |++..+.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 345567899999999999999999999999999999999998889999999999999999999999 9999999999999
Q ss_pred eeCCCcccc
Q psy3016 109 NKASSHQKN 117 (305)
Q Consensus 109 ~~~~~~~~~ 117 (305)
.++..+...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999876543
No 40
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=3.4e-19 Score=133.46 Aligned_cols=83 Identities=27% Similarity=0.436 Sum_probs=79.3
Q ss_pred CceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCC
Q psy3016 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS 113 (305)
Q Consensus 34 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~ 113 (305)
+++|||+|||..+++++|+++|+.||.|.+|+++.+..+|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999988899999999999999999999999999999999999999987
Q ss_pred ccc
Q psy3016 114 HQK 116 (305)
Q Consensus 114 ~~~ 116 (305)
...
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 653
No 41
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.3e-19 Score=135.78 Aligned_cols=88 Identities=34% Similarity=0.621 Sum_probs=82.3
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|+++|+.||.|.+|+++.+..++.++|||||+|.+.++|++|++.||+..+.|+.|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eCCCcccc
Q psy3016 110 KASSHQKN 117 (305)
Q Consensus 110 ~~~~~~~~ 117 (305)
++......
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99876544
No 42
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=136.23 Aligned_cols=90 Identities=28% Similarity=0.438 Sum_probs=83.3
Q ss_pred CCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
.......++|||+|||..+|+++|+++|+.||.|..|.++.+..++.++|||||+|.+.++|++|++.||+..+.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34556788999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EeeCCCcccc
Q psy3016 108 VNKASSHQKN 117 (305)
Q Consensus 108 v~~~~~~~~~ 117 (305)
|.++......
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999876543
No 43
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.6e-19 Score=132.91 Aligned_cols=85 Identities=32% Similarity=0.567 Sum_probs=80.6
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
...++|||+|||..+|+++|+++|+.||.|.+|+++.+..++.++|||||+|.+.++|.+|++.||+..+.|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCccc
Q psy3016 112 SSHQK 116 (305)
Q Consensus 112 ~~~~~ 116 (305)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87654
No 44
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=3.7e-19 Score=137.74 Aligned_cols=88 Identities=22% Similarity=0.357 Sum_probs=82.0
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||.++|+++|+++|+.||.|.+|+|+.+..++.++|||||+|.+.++|++|++.||+..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44466899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eCCCcccc
Q psy3016 110 KASSHQKN 117 (305)
Q Consensus 110 ~~~~~~~~ 117 (305)
++..+...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpz_A 101 LKRSKNDS 108 (115)
T ss_dssp CCCCSCCC
T ss_pred EcCCCCcC
Confidence 99876543
No 45
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=3.9e-19 Score=138.21 Aligned_cols=84 Identities=23% Similarity=0.362 Sum_probs=78.4
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
......++|||+|||.++|+++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eeCC
Q psy3016 109 NKAS 112 (305)
Q Consensus 109 ~~~~ 112 (305)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9863
No 46
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=136.11 Aligned_cols=88 Identities=27% Similarity=0.529 Sum_probs=82.0
Q ss_pred CCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
.......++|||+|||..+|+++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|.+|++.|+|..+.|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34556778999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EeeCCCcc
Q psy3016 108 VNKASSHQ 115 (305)
Q Consensus 108 v~~~~~~~ 115 (305)
|+++..+.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99987653
No 47
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=2.4e-19 Score=141.86 Aligned_cols=90 Identities=27% Similarity=0.418 Sum_probs=83.5
Q ss_pred CCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCee
Q psy3016 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKP 105 (305)
Q Consensus 26 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~ 105 (305)
.+.......++|||+|||..+|+++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 38 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 38 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp CCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34456677889999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred eEEeeCCCcc
Q psy3016 106 IRVNKASSHQ 115 (305)
Q Consensus 106 l~v~~~~~~~ 115 (305)
|+|.++..+.
T Consensus 118 l~V~~a~~~~ 127 (129)
T 2kxn_B 118 IRVDFSITKR 127 (129)
T ss_dssp CEESCCSSSS
T ss_pred EEEEEecCCC
Confidence 9999988654
No 48
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=7.9e-19 Score=133.53 Aligned_cols=87 Identities=21% Similarity=0.349 Sum_probs=80.5
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCC---eee
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYG---KPI 106 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g---~~l 106 (305)
.....++|||+|||..+|+++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|++|++.||+..+.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567899999999999999999999999999999999997 78999999999999999999999999999998 999
Q ss_pred EEeeCCCcccc
Q psy3016 107 RVNKASSHQKN 117 (305)
Q Consensus 107 ~v~~~~~~~~~ 117 (305)
.|.++......
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999876544
No 49
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=4.8e-19 Score=135.95 Aligned_cols=86 Identities=22% Similarity=0.350 Sum_probs=80.7
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|+++|+.||.|..|+++.+..++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eCCCcc
Q psy3016 110 KASSHQ 115 (305)
Q Consensus 110 ~~~~~~ 115 (305)
++..+.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 987654
No 50
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.1e-19 Score=134.34 Aligned_cols=86 Identities=26% Similarity=0.425 Sum_probs=80.7
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeE-EEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCee---
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVV-NVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKP--- 105 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~--- 105 (305)
.....++|||+|||..+|+++|+++|+.||.|. +|+++.++.++.++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 455678999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred -eEEeeCCCcc
Q psy3016 106 -IRVNKASSHQ 115 (305)
Q Consensus 106 -l~v~~~~~~~ 115 (305)
|+|.++....
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999987653
No 51
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=7.3e-20 Score=135.55 Aligned_cols=82 Identities=13% Similarity=0.275 Sum_probs=72.8
Q ss_pred ceEEEcCCCccccHHHHHHHhccCC--CeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 35 ATIYVGGLDDKVSETLMWELFVQSG--PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L~~~F~~~G--~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
.+|||+|||.++|+++|+++|+.|| .|.+++++.++.+|.++|||||+|.+.++|++|++.|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999899999999999999999999999999999999999999988
Q ss_pred Cccc
Q psy3016 113 SHQK 116 (305)
Q Consensus 113 ~~~~ 116 (305)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 52
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.1e-19 Score=133.35 Aligned_cols=88 Identities=23% Similarity=0.353 Sum_probs=81.2
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
......++|||+|||..+|+++|+++|+.||.|..|+++.+ ++.++|||||+|.+.++|.+|++.||+..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 44557889999999999999999999999999999999998 7889999999999999999999999999999999999
Q ss_pred eeCCCccccc
Q psy3016 109 NKASSHQKNL 118 (305)
Q Consensus 109 ~~~~~~~~~~ 118 (305)
.++..+....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2d9p_A 88 ALAQRKEERQ 97 (103)
T ss_dssp EECSSCCCCC
T ss_pred EEecccccCC
Confidence 9998765443
No 53
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8.1e-19 Score=134.75 Aligned_cols=88 Identities=22% Similarity=0.321 Sum_probs=82.2
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhc------CceeCC
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMN------MIKLYG 103 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~------g~~~~g 103 (305)
.....++|||+|||..+|+++|+++|+.||.|..|+|+.+..++.++|||||+|.+.++|.+|++.|+ +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 45567899999999999999999999999999999999998889999999999999999999999999 999999
Q ss_pred eeeEEeeCCCcccc
Q psy3016 104 KPIRVNKASSHQKN 117 (305)
Q Consensus 104 ~~l~v~~~~~~~~~ 117 (305)
+.|+|.++..+...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999876543
No 54
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7.4e-19 Score=134.10 Aligned_cols=89 Identities=26% Similarity=0.464 Sum_probs=82.1
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEccc-CCCCCcceEEEEEEcCHHHHHHHHHHh-cCceeCCeee
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKD-RVTQTHQGYGFIEFMGEEDADYAIKIM-NMIKLYGKPI 106 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~-~~~~~~~g~afV~f~~~e~A~~Ai~~l-~g~~~~g~~l 106 (305)
......++|||+|||..+|+++|+++|+.||.|..|+++.+ ..++.++|||||+|.+.++|.+|++.| |+..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34556789999999999999999999999999999999998 778999999999999999999999999 9999999999
Q ss_pred EEeeCCCcccc
Q psy3016 107 RVNKASSHQKN 117 (305)
Q Consensus 107 ~v~~~~~~~~~ 117 (305)
.|.++..+...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999876543
No 55
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=135.42 Aligned_cols=89 Identities=31% Similarity=0.524 Sum_probs=82.4
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
......++|||+|||.++|+++|+++|+.||.|..|+++.+..++.++|||||+|.+.++|.+|++.||+..+.|+.|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34556789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eeCCCcccc
Q psy3016 109 NKASSHQKN 117 (305)
Q Consensus 109 ~~~~~~~~~ 117 (305)
.++......
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 998876543
No 56
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.3e-19 Score=133.33 Aligned_cols=86 Identities=30% Similarity=0.551 Sum_probs=80.8
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEE-EEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEee
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i-~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~ 110 (305)
...++|||+|||..+|+++|+++|+.||.|..| +++.++.++.++|||||+|.+.++|++|++.||+..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999988899999999999999999999999999999999999999
Q ss_pred CCCcccc
Q psy3016 111 ASSHQKN 117 (305)
Q Consensus 111 ~~~~~~~ 117 (305)
+..+...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 57
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.6e-19 Score=135.08 Aligned_cols=86 Identities=24% Similarity=0.403 Sum_probs=80.3
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|+++|+.||.|.+|.++.+..++.++|||||+|.+.++|++|++.|||..+.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34456899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eCCCcc
Q psy3016 110 KASSHQ 115 (305)
Q Consensus 110 ~~~~~~ 115 (305)
++..+.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 987653
No 58
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=1.1e-19 Score=137.40 Aligned_cols=83 Identities=27% Similarity=0.324 Sum_probs=78.5
Q ss_pred CCceEEEcCCCc------cccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCC-ee
Q psy3016 33 GDATIYVGGLDD------KVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYG-KP 105 (305)
Q Consensus 33 ~~~~l~V~nLp~------~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g-~~ 105 (305)
.+++|||+|||. .+++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357999999999 99999999999999999999999999889999999999999999999999999999999 99
Q ss_pred eEEeeCCCcc
Q psy3016 106 IRVNKASSHQ 115 (305)
Q Consensus 106 l~v~~~~~~~ 115 (305)
|+|.++.+..
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999987543
No 59
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=8.9e-19 Score=128.60 Aligned_cols=83 Identities=25% Similarity=0.433 Sum_probs=76.2
Q ss_pred CCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
.......++|||+|||.++|+++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++ +++..+.|+.|.
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 3455678899999999999999999999999999999999998889999999999999999999997 588899999999
Q ss_pred EeeC
Q psy3016 108 VNKA 111 (305)
Q Consensus 108 v~~~ 111 (305)
|+++
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 60
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=7.4e-19 Score=132.34 Aligned_cols=84 Identities=27% Similarity=0.392 Sum_probs=78.9
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCCeEE--------EEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCce
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVN--------VHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIK 100 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~ 100 (305)
......++|||+|||.++|+++|+++|+.||.|.. |+++.++.+|.++|||||+|.+.++|.+|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34556789999999999999999999999999999 9999998899999999999999999999999999999
Q ss_pred eCCeeeEEeeCC
Q psy3016 101 LYGKPIRVNKAS 112 (305)
Q Consensus 101 ~~g~~l~v~~~~ 112 (305)
+.|+.|+|+++.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 61
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6.8e-19 Score=132.20 Aligned_cols=86 Identities=20% Similarity=0.386 Sum_probs=79.3
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCC---CCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRV---TQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~---~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
...++|||+|||.++|+++|+++|+.||.|..|.++.+.. ++.++|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999998875 5589999999999999999999999999999999999
Q ss_pred eeCCCcccc
Q psy3016 109 NKASSHQKN 117 (305)
Q Consensus 109 ~~~~~~~~~ 117 (305)
.++......
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 62
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=5.5e-19 Score=134.66 Aligned_cols=90 Identities=24% Similarity=0.423 Sum_probs=82.5
Q ss_pred CCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCcee---CCe
Q psy3016 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKL---YGK 104 (305)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~---~g~ 104 (305)
.......++|||+|||..+|+++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.||+..+ .|+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 34556678999999999999999999999999999999999988899999999999999999999999999887 899
Q ss_pred eeEEeeCCCcccc
Q psy3016 105 PIRVNKASSHQKN 117 (305)
Q Consensus 105 ~l~v~~~~~~~~~ 117 (305)
.|.|.++......
T Consensus 87 ~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 87 PIQVKPADSESRG 99 (106)
T ss_dssp CCEEEECCCCSCC
T ss_pred eEEEEECCccccc
Confidence 9999999876543
No 63
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=3e-19 Score=134.95 Aligned_cols=91 Identities=23% Similarity=0.441 Sum_probs=81.6
Q ss_pred ceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCCc
Q psy3016 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSH 114 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~~ 114 (305)
++|||+|||.++|+++|+++|+.||.|.+|.++.+ ++|||||+|.+.++|++|++.|++..+.|+.|+|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999887 6799999999999999999999999999999999999875
Q ss_pred cccc---------cccccccccCCC
Q psy3016 115 QKNL---------DVGANIFIGNLD 130 (305)
Q Consensus 115 ~~~~---------~~~~~l~v~nl~ 130 (305)
.... ....+|||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 4321 125789999997
No 64
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.78 E-value=3.5e-19 Score=134.36 Aligned_cols=80 Identities=29% Similarity=0.564 Sum_probs=75.9
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
.++|||+|||.++|+++|+++|+.||.|..+ .+++|..+|.
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v---------------------------------------~i~~d~~tg~ 59 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESA---------------------------------------KLIRDKVAGH 59 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEE---------------------------------------EEEECSSSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEe---------------------------------------EeeecCCCCc
Confidence 5689999999999999999999999999887 7788988999
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeee
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 239 (305)
++|||||+|.+.++|.+|++.|||..+.|+.|+|+||++
T Consensus 60 ~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 60 SLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred ccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 999999999999999999999999999999999999965
No 65
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-18 Score=130.07 Aligned_cols=89 Identities=22% Similarity=0.359 Sum_probs=80.5
Q ss_pred CCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeee
Q psy3016 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPI 106 (305)
Q Consensus 27 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l 106 (305)
..+.....++|||+|||..+|+++|+++|+.||.|.+|+|+.+.. .++|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345566789999999999999999999999999999999998863 388999999999999999999999999999999
Q ss_pred EEeeCCCcccc
Q psy3016 107 RVNKASSHQKN 117 (305)
Q Consensus 107 ~v~~~~~~~~~ 117 (305)
+|.++..+...
T Consensus 86 ~v~~a~~~~~~ 96 (103)
T 2cq3_A 86 EVNNATARVMT 96 (103)
T ss_dssp EEEECCSSCCC
T ss_pred EEEEcccCCCC
Confidence 99999876543
No 66
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=134.06 Aligned_cols=88 Identities=26% Similarity=0.353 Sum_probs=81.0
Q ss_pred CCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
.......++|||+|||..+|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|++|++.+++ .+.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34556678999999999999999999999999999999999988899999999999999999999999998 89999999
Q ss_pred EeeCCCccc
Q psy3016 108 VNKASSHQK 116 (305)
Q Consensus 108 v~~~~~~~~ 116 (305)
|+++.....
T Consensus 90 V~~a~~~~~ 98 (116)
T 2cqd_A 90 VNLAYLGAK 98 (116)
T ss_dssp EEESTTTCC
T ss_pred EEEcccCCC
Confidence 999976543
No 67
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=139.47 Aligned_cols=90 Identities=28% Similarity=0.426 Sum_probs=83.4
Q ss_pred CCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
.......++|||+|||.++|+++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.||+..+.|+.|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34556678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EeeCCCcccc
Q psy3016 108 VNKASSHQKN 117 (305)
Q Consensus 108 v~~~~~~~~~ 117 (305)
|.++......
T Consensus 116 v~~a~~~~~~ 125 (139)
T 1u6f_A 116 VALAASGHQR 125 (139)
T ss_dssp EEESSCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876544
No 68
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-18 Score=130.58 Aligned_cols=88 Identities=34% Similarity=0.538 Sum_probs=79.6
Q ss_pred CCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
.......++|||+|||..+|+++|+++|+.||.|.+|+++.+..+ ++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 345567899999999999999999999999999999999998633 689999999999999999999999999999999
Q ss_pred EeeCCCcccc
Q psy3016 108 VNKASSHQKN 117 (305)
Q Consensus 108 v~~~~~~~~~ 117 (305)
|.++......
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2cqi_A 87 VNWATTPSSQ 96 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEECCCCccc
Confidence 9999876543
No 69
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=134.15 Aligned_cols=88 Identities=23% Similarity=0.345 Sum_probs=81.9
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeE--------EEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCcee
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVV--------NVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKL 101 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~ 101 (305)
.....++|||+|||..+|+++|+++|+.||.|. .|+|+.++.++.++|||||+|.+.++|++|++.||+..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 455678999999999999999999999999999 699999988899999999999999999999999999999
Q ss_pred CCeeeEEeeCCCcccc
Q psy3016 102 YGKPIRVNKASSHQKN 117 (305)
Q Consensus 102 ~g~~l~v~~~~~~~~~ 117 (305)
.|+.|+|.++..+...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999876543
No 70
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.6e-19 Score=136.96 Aligned_cols=85 Identities=21% Similarity=0.365 Sum_probs=79.1
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|++|+ .||+..+.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 3445689999999999999999999999999999999999988999999999999999999999 899999999999999
Q ss_pred eCCCcc
Q psy3016 110 KASSHQ 115 (305)
Q Consensus 110 ~~~~~~ 115 (305)
++..+.
T Consensus 100 ~a~~~~ 105 (114)
T 2cq4_A 100 ASQAEK 105 (114)
T ss_dssp EHHHHH
T ss_pred ecCCCc
Confidence 987643
No 71
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=130.26 Aligned_cols=83 Identities=41% Similarity=0.795 Sum_probs=77.5
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+++++|+++|+.||.|.+|+++.+.. +.++|||||+|.+.++|.+|++.||+..+.|+.|+|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 445678999999999999999999999999999999999975 8899999999999999999999999999999999999
Q ss_pred eCCC
Q psy3016 110 KASS 113 (305)
Q Consensus 110 ~~~~ 113 (305)
++..
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 8763
No 72
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.78 E-value=9.7e-19 Score=134.26 Aligned_cols=91 Identities=24% Similarity=0.412 Sum_probs=76.6
Q ss_pred CCCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCe
Q psy3016 25 EGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGK 104 (305)
Q Consensus 25 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~ 104 (305)
....+.....++|||+|||..+|+++|+++|+.||.|.+|+++.+..+|.++|||||+|.+.++|.+|++.+ +..+.|+
T Consensus 16 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~ 94 (109)
T 2rs2_A 16 PRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSK 94 (109)
T ss_dssp ----------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTE
T ss_pred ccccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCE
Confidence 344456677899999999999999999999999999999999999888999999999999999999999975 5999999
Q ss_pred eeEEeeCCCccc
Q psy3016 105 PIRVNKASSHQK 116 (305)
Q Consensus 105 ~l~v~~~~~~~~ 116 (305)
.|.|.++..+..
T Consensus 95 ~l~V~~a~~~~~ 106 (109)
T 2rs2_A 95 TIDPKVAFPRRA 106 (109)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEEEEccCCCC
Confidence 999999987653
No 73
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.9e-18 Score=130.99 Aligned_cols=86 Identities=20% Similarity=0.320 Sum_probs=79.8
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|+++|+.|| |.+|+++.+..++.++|||||+|.+.++|++|+ .||+..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 445678999999999999999999999997 999999999988999999999999999999999 799999999999999
Q ss_pred eCCCcccc
Q psy3016 110 KASSHQKN 117 (305)
Q Consensus 110 ~~~~~~~~ 117 (305)
++......
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99876543
No 74
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.78 E-value=8.8e-19 Score=128.72 Aligned_cols=83 Identities=23% Similarity=0.446 Sum_probs=77.0
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCC-cceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQT-HQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~-~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
..++|||+|||.++|+++|+++|+.||.|.+|.++.+..++. ++|||||+|.+.++|.+|++.|||..+.|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999999876655 8999999999999999999999999999999999998
Q ss_pred CCcc
Q psy3016 112 SSHQ 115 (305)
Q Consensus 112 ~~~~ 115 (305)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 75
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.9e-18 Score=132.34 Aligned_cols=88 Identities=26% Similarity=0.383 Sum_probs=80.7
Q ss_pred CCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeee
Q psy3016 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPI 106 (305)
Q Consensus 27 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l 106 (305)
+.......++|||+|||..+|+++|+++|+.||.|.+|+|+.++ ++.++|||||+|.+.++|++|++.||+..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 8 ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 33455668899999999999999999999999999999999997 58999999999999999999999999999999999
Q ss_pred EEeeCCCcc
Q psy3016 107 RVNKASSHQ 115 (305)
Q Consensus 107 ~v~~~~~~~ 115 (305)
.|.++....
T Consensus 87 ~v~~a~~~~ 95 (114)
T 2do0_A 87 HVKMDERAL 95 (114)
T ss_dssp EEEECSCCC
T ss_pred EEEEcccCC
Confidence 999987543
No 76
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-18 Score=131.06 Aligned_cols=86 Identities=26% Similarity=0.381 Sum_probs=79.5
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCC-CCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVT-QTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~-~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
.....++|||+|||..+|+++|+++|+.|| |.+|.|+.+..+ +.++|||||+|.+.++|++|+ .|++..+.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345568999999999999999999999999 999999999877 899999999999999999999 89999999999999
Q ss_pred eeCCCcccc
Q psy3016 109 NKASSHQKN 117 (305)
Q Consensus 109 ~~~~~~~~~ 117 (305)
.++..+...
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999876544
No 77
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=129.40 Aligned_cols=84 Identities=23% Similarity=0.236 Sum_probs=76.7
Q ss_pred cCCCCceEEEcCCCccccHHHHH----HHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCee
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMW----ELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKP 105 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~ 105 (305)
.....++|||+|||..+++++|+ ++|+.||.|.+|+++.++.+ +|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34456899999999999999999 99999999999999998754 799999999999999999999999999999
Q ss_pred eEEeeCCCccc
Q psy3016 106 IRVNKASSHQK 116 (305)
Q Consensus 106 l~v~~~~~~~~ 116 (305)
|+|+++.+...
T Consensus 82 l~V~~a~~~~~ 92 (96)
T 2dgx_A 82 ILVSLATGASG 92 (96)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEEcCCCCC
Confidence 99999976543
No 78
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=1.7e-18 Score=132.16 Aligned_cols=84 Identities=26% Similarity=0.362 Sum_probs=78.7
Q ss_pred CCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
.......++|||+|||..+|+++|+++|+.||.|.+|+++.+. ++.++|||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3455678899999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred EeeCC
Q psy3016 108 VNKAS 112 (305)
Q Consensus 108 v~~~~ 112 (305)
|+++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 79
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=3.2e-19 Score=142.28 Aligned_cols=126 Identities=20% Similarity=0.237 Sum_probs=82.0
Q ss_pred eEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCCccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhh
Q psy3016 77 GYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMN 156 (305)
Q Consensus 77 g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~ 156 (305)
-++|++|.+...+..|++.++|....|+. .+.+..+ .......++|||+|||.++|+++|+++|+.||.|..+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~-~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v----- 77 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDV----- 77 (135)
T ss_dssp -------------------------------CCSCCS-CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEE-----
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC-CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE-----
Confidence 46899999999999999999876655543 2223332 2233456889999999999999999999999999877
Q ss_pred hhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEE
Q psy3016 157 MIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSY 236 (305)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~ 236 (305)
.++.+..++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|
T Consensus 78 ----------------------------------~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 78 ----------------------------------YIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp ----------------------------------ECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred ----------------------------------EEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 6788888899999999999999999999999999999999999999
Q ss_pred eeecCCc
Q psy3016 237 AFKKDSK 243 (305)
Q Consensus 237 a~~~~~~ 243 (305)
++.+...
T Consensus 124 a~~~~~~ 130 (135)
T 2lea_A 124 ARYGRPP 130 (135)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9776543
No 80
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=8.1e-19 Score=131.76 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=79.2
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|++|++.||+..+.|+.|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567899999999999999999999999999998888888889999999999999999999999999999999999999
Q ss_pred eCCCc
Q psy3016 110 KASSH 114 (305)
Q Consensus 110 ~~~~~ 114 (305)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 81
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=135.23 Aligned_cols=84 Identities=35% Similarity=0.588 Sum_probs=79.5
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEee
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~ 110 (305)
.+..++|||+|||.++|+++|+++|+.||.|..|.++.+. ++.++|||||+|.+.++|++|++.|||..+.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred CCCcc
Q psy3016 111 ASSHQ 115 (305)
Q Consensus 111 ~~~~~ 115 (305)
+....
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 98654
No 82
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.1e-19 Score=130.50 Aligned_cols=81 Identities=21% Similarity=0.399 Sum_probs=76.8
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
...++|||+|||..+|+++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999888999999999999999999999999999999999988775
Q ss_pred C
Q psy3016 112 S 112 (305)
Q Consensus 112 ~ 112 (305)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 83
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=3.5e-18 Score=134.04 Aligned_cols=88 Identities=28% Similarity=0.381 Sum_probs=81.7
Q ss_pred CCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeee
Q psy3016 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPI 106 (305)
Q Consensus 27 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l 106 (305)
.+......++|||+|||..+++++|+++|+.||.|.+|+++.+. ++.++|||||+|.+.++|.+|++.||+..+.|+.|
T Consensus 28 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 106 (124)
T 2kt5_A 28 GGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 106 (124)
T ss_dssp CCCCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 34456677899999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred EEeeCCCcc
Q psy3016 107 RVNKASSHQ 115 (305)
Q Consensus 107 ~v~~~~~~~ 115 (305)
+|+++....
T Consensus 107 ~V~~a~~~~ 115 (124)
T 2kt5_A 107 DIQLVASQI 115 (124)
T ss_dssp EEEEECCTT
T ss_pred EEEEeCCCC
Confidence 999988654
No 84
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=141.88 Aligned_cols=83 Identities=18% Similarity=0.349 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCC--CeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSG--PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
...++|||+|||.++|+++|+++|+.|| .|.+|+|+.|+.+|.++|||||+|.+.++|++||+.|||..+.|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred eCCCc
Q psy3016 110 KASSH 114 (305)
Q Consensus 110 ~~~~~ 114 (305)
++...
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98754
No 85
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=1.7e-18 Score=127.58 Aligned_cols=80 Identities=23% Similarity=0.401 Sum_probs=76.5
Q ss_pred CceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCC
Q psy3016 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS 113 (305)
Q Consensus 34 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~ 113 (305)
.++|||+|||.++|+++|+++|+.||.|.+++++.+..++.++|||||+|.+.++|++|+ .||+..+.|+.|+|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999888999999999999999999999 8999999999999999876
Q ss_pred c
Q psy3016 114 H 114 (305)
Q Consensus 114 ~ 114 (305)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 86
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=132.13 Aligned_cols=88 Identities=24% Similarity=0.412 Sum_probs=81.7
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
......++|||+|||..+|+++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3456778999999999999999999999999999999999988899999999999999999999998 999999999999
Q ss_pred eeCCCcccc
Q psy3016 109 NKASSHQKN 117 (305)
Q Consensus 109 ~~~~~~~~~ 117 (305)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 87
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=133.54 Aligned_cols=92 Identities=21% Similarity=0.335 Sum_probs=80.2
Q ss_pred ccccCCCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCce
Q psy3016 21 QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIK 100 (305)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~ 100 (305)
....+.+.+.....++|||+|||..+|+++|+++|+.||.|.+|+++.+. +.++|||||+|.+.++|++|++.|+|..
T Consensus 16 ~~~~S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~ 93 (109)
T 2err_A 16 PRGSHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTV 93 (109)
T ss_dssp ------CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCE
T ss_pred CCCCCCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCE
Confidence 33445666777888999999999999999999999999999999999885 3488999999999999999999999999
Q ss_pred eCCeeeEEeeCCCc
Q psy3016 101 LYGKPIRVNKASSH 114 (305)
Q Consensus 101 ~~g~~l~v~~~~~~ 114 (305)
+.|+.|+|+++..+
T Consensus 94 ~~g~~l~V~~a~~~ 107 (109)
T 2err_A 94 VEGRKIEVNNATAR 107 (109)
T ss_dssp ETTEECEEEECCCS
T ss_pred ECCEEEEEEECCCC
Confidence 99999999998764
No 88
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1e-18 Score=135.42 Aligned_cols=88 Identities=17% Similarity=0.394 Sum_probs=80.9
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
......++|||+|||..+|+++|+++|+.||.|..|+|+.+..++.++|||||+|.+.++|++|++. ++..+.|+.|+|
T Consensus 22 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V 100 (116)
T 1x4b_A 22 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEP 100 (116)
T ss_dssp CHHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEE
Confidence 3444568999999999999999999999999999999999988899999999999999999999997 999999999999
Q ss_pred eeCCCcccc
Q psy3016 109 NKASSHQKN 117 (305)
Q Consensus 109 ~~~~~~~~~ 117 (305)
.++..+...
T Consensus 101 ~~a~~~~~~ 109 (116)
T 1x4b_A 101 KRAVAREES 109 (116)
T ss_dssp ECCSSCCCC
T ss_pred EECCCCccC
Confidence 999876543
No 89
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=2.6e-18 Score=127.42 Aligned_cols=85 Identities=24% Similarity=0.384 Sum_probs=78.4
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|+++|+.||.|..|+++.+ ++.++|||||+|.+.++|++|++.|++..+.|+.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999885 68899999999999999999999999999999999999
Q ss_pred eCCCccc
Q psy3016 110 KASSHQK 116 (305)
Q Consensus 110 ~~~~~~~ 116 (305)
++.....
T Consensus 82 ~a~~~~~ 88 (92)
T 2dgv_A 82 IDRNASG 88 (92)
T ss_dssp ECSCCSS
T ss_pred EcCCCCC
Confidence 9887653
No 90
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=6.8e-19 Score=131.37 Aligned_cols=84 Identities=17% Similarity=0.161 Sum_probs=75.9
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|++|++.||+..+.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 34456899999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred eCCC
Q psy3016 110 KASS 113 (305)
Q Consensus 110 ~~~~ 113 (305)
++..
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 8753
No 91
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=131.67 Aligned_cols=87 Identities=25% Similarity=0.445 Sum_probs=80.4
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhcc-CCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCce-eCCeeeE
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQ-SGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIK-LYGKPIR 107 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~-~~g~~l~ 107 (305)
.....++|||+|||..+|+++|+++|+. ||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.|++.. +.|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999998 89999999999999999999999999999 9999999
Q ss_pred EeeCCCcccc
Q psy3016 108 VNKASSHQKN 117 (305)
Q Consensus 108 v~~~~~~~~~ 117 (305)
|.++..+...
T Consensus 84 v~~a~~~~~~ 93 (104)
T 2dhg_A 84 LSVAIPKASR 93 (104)
T ss_dssp CCBCCCCCSC
T ss_pred EEEccCCCcC
Confidence 9999765543
No 92
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=131.17 Aligned_cols=83 Identities=27% Similarity=0.286 Sum_probs=74.5
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhc--CceeCCeeeE
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMN--MIKLYGKPIR 107 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~--g~~~~g~~l~ 107 (305)
+....++|||+|||.++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|++.|+ +..+.|+.|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4556889999999999999999999999999999999875 5999999999999999999886 4789999999
Q ss_pred EeeCCCccccc
Q psy3016 108 VNKASSHQKNL 118 (305)
Q Consensus 108 v~~~~~~~~~~ 118 (305)
|.++..+....
T Consensus 86 V~~A~~~~~~~ 96 (105)
T 1sjq_A 86 IQFSNHKELKT 96 (105)
T ss_dssp BCCCSSSSCCC
T ss_pred EEEcCCCCCCc
Confidence 99998765443
No 93
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.3e-18 Score=127.44 Aligned_cols=88 Identities=24% Similarity=0.277 Sum_probs=80.3
Q ss_pred CCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
.......++|||+|||..+|+++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|.+|++ ++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 3455667899999999999999999999999999999999998889999999999999999999999 57899999999
Q ss_pred EeeCCCcccc
Q psy3016 108 VNKASSHQKN 117 (305)
Q Consensus 108 v~~~~~~~~~ 117 (305)
|.++..+...
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cqg_A 87 CKLPNSKQSQ 96 (103)
T ss_dssp EECCCTTCCC
T ss_pred EEecCCCCcC
Confidence 9999876543
No 94
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.76 E-value=5e-18 Score=135.59 Aligned_cols=85 Identities=38% Similarity=0.683 Sum_probs=78.9
Q ss_pred CCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeee
Q psy3016 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPI 106 (305)
Q Consensus 27 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l 106 (305)
........++|||+|||..+|+++|+++|+.||.|..++++.++.++.++|||||+|.+.++|++|++.||+..+.|+.|
T Consensus 56 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 56 SGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34455678899999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEeeC
Q psy3016 107 RVNKA 111 (305)
Q Consensus 107 ~v~~~ 111 (305)
+|+++
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99875
No 95
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=3e-18 Score=124.72 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
-++..|||+||+..+|+++|+++|.+||+|.+++++. ++|||||+|.+.++|.+|++.||+..+.|+.|+|+.+
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3577999999999999999999999999999999965 5799999999999999999999999999999999987
Q ss_pred C
Q psy3016 112 S 112 (305)
Q Consensus 112 ~ 112 (305)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 96
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=9.4e-19 Score=132.16 Aligned_cols=86 Identities=24% Similarity=0.353 Sum_probs=75.2
Q ss_pred CCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccC-CCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeee
Q psy3016 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDR-VTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPI 106 (305)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~-~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l 106 (305)
.......++|||+|||.++|+++|+++|+.|| |.+|+++.+. .+|+++|||||+|.+.++|.+|+ .|+|..+.|+.|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34556789999999999999999999999999 9999999998 58999999999999999999999 899999999999
Q ss_pred EEeeCCCcc
Q psy3016 107 RVNKASSHQ 115 (305)
Q Consensus 107 ~v~~~~~~~ 115 (305)
+|+++..+.
T Consensus 91 ~V~~a~~~~ 99 (100)
T 2j76_E 91 RVDVADQAQ 99 (100)
T ss_dssp CCEECCCSC
T ss_pred EEEeccCCC
Confidence 999987653
No 97
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=132.31 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=75.5
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
...++|||+|||.++|+++|+++|+.||.|.+|.|+.+.. +.++|||||+|.+.++|.+|++ +++..+.|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3468999999999999999999999999999999999986 9999999999999999999999 8999999999999987
Q ss_pred CC
Q psy3016 112 SS 113 (305)
Q Consensus 112 ~~ 113 (305)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 98
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=131.90 Aligned_cols=84 Identities=30% Similarity=0.547 Sum_probs=79.5
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
..++|||+|||..+++++|+++|+.||.|..|+++.+..+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45799999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred Cccc
Q psy3016 113 SHQK 116 (305)
Q Consensus 113 ~~~~ 116 (305)
....
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 7653
No 99
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=5.4e-18 Score=138.30 Aligned_cols=88 Identities=27% Similarity=0.475 Sum_probs=82.1
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
......++|||+|||..+|+++|+++|+.||.|..|+|+.+..++.++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred eeCCCccc
Q psy3016 109 NKASSHQK 116 (305)
Q Consensus 109 ~~~~~~~~ 116 (305)
.++.....
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99987543
No 100
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=8.9e-19 Score=124.93 Aligned_cols=75 Identities=27% Similarity=0.461 Sum_probs=72.2
Q ss_pred eEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 36 ~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
+|||+|||.++|+++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|++|++ +++..+.|+.|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998889999999999999999999998 9999999999999875
No 101
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.75 E-value=3.3e-18 Score=134.49 Aligned_cols=87 Identities=24% Similarity=0.396 Sum_probs=80.8
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|+++|+.||.|.+|.|+.+..++.++|||||+|.+.++|++|++.||+..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 33456799999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eCCCccc
Q psy3016 110 KASSHQK 116 (305)
Q Consensus 110 ~~~~~~~ 116 (305)
++.....
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9976543
No 102
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=3e-18 Score=130.56 Aligned_cols=87 Identities=23% Similarity=0.309 Sum_probs=77.7
Q ss_pred CCCcCCCCceEEEcCCCccc------cHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCce
Q psy3016 27 GGESGDGDATIYVGGLDDKV------SETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIK 100 (305)
Q Consensus 27 ~~~~~~~~~~l~V~nLp~~~------te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~ 100 (305)
+.......++|||+|||..+ |+++|+++|+.||.|.+|.++. .+|.++|||||+|.+.++|.+|++.|||..
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~ 85 (105)
T 2nlw_A 8 PQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYK 85 (105)
T ss_dssp CCSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEE
T ss_pred CCCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcc
Confidence 33445557899999999999 7899999999999999999983 578999999999999999999999999999
Q ss_pred eCCe-eeEEeeCCCcc
Q psy3016 101 LYGK-PIRVNKASSHQ 115 (305)
Q Consensus 101 ~~g~-~l~v~~~~~~~ 115 (305)
+.|+ .|+|.++....
T Consensus 86 ~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 86 LDKQHTFRVNLFTDFD 101 (105)
T ss_dssp CSTTCEEEEECSCCCC
T ss_pred cCCCceEEEEEcchHh
Confidence 9998 99999987543
No 103
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=7.7e-19 Score=139.26 Aligned_cols=86 Identities=22% Similarity=0.366 Sum_probs=80.1
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEE--EEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCc----eeCC
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVN--VHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMI----KLYG 103 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~----~~~g 103 (305)
.....++|||+|||.++|+++|+++|+.||.|.. |+|+.++.+|.++|||||+|.+. +|.+|++.||+. .+.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 4466789999999999999999999999999977 99999998999999999999999 999999999999 9999
Q ss_pred eeeEEeeCCCccc
Q psy3016 104 KPIRVNKASSHQK 116 (305)
Q Consensus 104 ~~l~v~~~~~~~~ 116 (305)
+.|.|.++.+...
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999987643
No 104
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-17 Score=127.58 Aligned_cols=84 Identities=23% Similarity=0.394 Sum_probs=76.5
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|+++|+.||.|..|++..+ +.++|||||+|.+.++|++|++.||+..+.|+.|+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4456789999999999999999999999999999999665 4578999999999999999999999999999999999
Q ss_pred eCCCccc
Q psy3016 110 KASSHQK 116 (305)
Q Consensus 110 ~~~~~~~ 116 (305)
++.....
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4a_A 95 FPRSGRG 101 (109)
T ss_dssp CCCCCCC
T ss_pred EcccCCC
Confidence 9987654
No 105
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=129.03 Aligned_cols=85 Identities=16% Similarity=0.288 Sum_probs=77.8
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCcee-------
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKL------- 101 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~------- 101 (305)
......++|||+|||..+|+++|+++|+.||.|.+|+++.+. ++.++|||||+|.+.++|++|++.|||..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 344567899999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred -CCeeeEEeeCCCc
Q psy3016 102 -YGKPIRVNKASSH 114 (305)
Q Consensus 102 -~g~~l~v~~~~~~ 114 (305)
.++.|.|.++.+.
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5778999888753
No 106
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.75 E-value=2.2e-18 Score=127.90 Aligned_cols=83 Identities=19% Similarity=0.399 Sum_probs=75.1
Q ss_pred cccccccCCCchhcHHHHHHHHhhcC-cccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFG-VILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
+++|||+|||.++|+++|+++|+.|| .|..+ .+++|..++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v---------------------------------------~i~~d~~t~ 41 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREV---------------------------------------RLMRNKSSG 41 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBC---------------------------------------CSSSCSSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEE---------------------------------------EEEecCCCC
Confidence 36899999999999999999999999 78766 789999999
Q ss_pred CccceEEEEeCChHHHHHHHHHh-cCeeecCeeeEEEEeeecCC
Q psy3016 200 NSKGFAFINYASFEASDASIDAM-HGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l-~~~~~~g~~l~v~~a~~~~~ 242 (305)
.++|||||+|.+.++|.+|++.+ |+..++|++|+|.|+.++..
T Consensus 42 ~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~ 85 (91)
T 2lxi_A 42 QSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPK 85 (91)
T ss_dssp CCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCC
T ss_pred CcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCC
Confidence 99999999999999999999987 45679999999999977643
No 107
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8e-18 Score=124.59 Aligned_cols=83 Identities=25% Similarity=0.346 Sum_probs=77.4
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|+++|+.| .|.+|+++.+ .+|.++|||||+|.+.++|.+|++ ||+..+.|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 44567899999999999999999999999 9999999999 689999999999999999999999 99999999999999
Q ss_pred eCCCcc
Q psy3016 110 KASSHQ 115 (305)
Q Consensus 110 ~~~~~~ 115 (305)
++..+.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 987653
No 108
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.2e-18 Score=130.54 Aligned_cols=86 Identities=16% Similarity=0.299 Sum_probs=78.1
Q ss_pred cCCCCceEEEcCCCccccHHHHH---HHhccCCCeEEEEEcccCCCC---CcceEEEEEEcCHHHHHHHHHHhcCceeCC
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMW---ELFVQSGPVVNVHMPKDRVTQ---THQGYGFIEFMGEEDADYAIKIMNMIKLYG 103 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~i~~~~~~~~~---~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g 103 (305)
.....++|||+|||..+++++|+ ++|++||.|.+|.++.+..++ .++|||||+|.+.++|++|++.||+..+.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 44457799999999999999999 999999999999999887643 556999999999999999999999999999
Q ss_pred eeeEEeeCCCcc
Q psy3016 104 KPIRVNKASSHQ 115 (305)
Q Consensus 104 ~~l~v~~~~~~~ 115 (305)
+.|+|.++..+.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999988764
No 109
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.75 E-value=6.5e-18 Score=137.93 Aligned_cols=87 Identities=28% Similarity=0.462 Sum_probs=81.5
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|+++|+.||.|.+|+++.+..+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44557899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eCCCccc
Q psy3016 110 KASSHQK 116 (305)
Q Consensus 110 ~~~~~~~ 116 (305)
++.....
T Consensus 146 ~a~~~~~ 152 (158)
T 2kn4_A 146 MARYGRP 152 (158)
T ss_dssp EECCSSC
T ss_pred ECCCCCC
Confidence 9987643
No 110
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=2.8e-18 Score=141.41 Aligned_cols=125 Identities=24% Similarity=0.382 Sum_probs=78.5
Q ss_pred EEEcCHHHHHHHHHHhcCceeC--CeeeEEeeCCC-------------------ccccccccccccccCCCchhcHHHHH
Q psy3016 81 IEFMGEEDADYAIKIMNMIKLY--GKPIRVNKASS-------------------HQKNLDVGANIFIGNLDPEVDEKLLY 139 (305)
Q Consensus 81 V~f~~~e~A~~Ai~~l~g~~~~--g~~l~v~~~~~-------------------~~~~~~~~~~l~v~nl~~~~t~~~l~ 139 (305)
.+|.+.++|..|+..|++.... |+.+...+... ........++|||+||+..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7889999999999988876554 55555544211 01112235689999999999999999
Q ss_pred HHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHH
Q psy3016 140 DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASI 219 (305)
Q Consensus 140 ~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al 219 (305)
++|..||.|..+ .++.+..+|.++|||||+|.+.++|.+|+
T Consensus 91 ~~F~~~G~i~~v---------------------------------------~i~~~~~~g~~~g~afV~f~~~~~A~~Ai 131 (165)
T 1rk8_A 91 EKFCDYGEIKNI---------------------------------------HLNLDRRTGFSKGYALVEYETHKQALAAK 131 (165)
T ss_dssp HHHGGGSCEEEE---------------------------------------EEEECTTTSSEEEEEEEEESSHHHHHHHH
T ss_pred HHhhcCCCEEEE---------------------------------------EEEecCCCCcEeeEEEEEECCHHHHHHHH
Confidence 999999999887 67888888999999999999999999999
Q ss_pred HHhcCeeecCeeeEEEEeeecCCcC
Q psy3016 220 DAMHGQYLCNRPISVSYAFKKDSKG 244 (305)
Q Consensus 220 ~~l~~~~~~g~~l~v~~a~~~~~~~ 244 (305)
..|||..|.|+.|.|.|+..+..+.
T Consensus 132 ~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 132 EALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHTTCEETTEECEEEESEECC---
T ss_pred HHhCCCEECCEEEEEEEecCCCCCC
Confidence 9999999999999999998876543
No 111
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1e-18 Score=125.16 Aligned_cols=76 Identities=26% Similarity=0.452 Sum_probs=73.2
Q ss_pred ceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
++|||+|||.++|+++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|++|++.++ ..+.|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999998889999999999999999999999988 9999999999986
No 112
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=125.90 Aligned_cols=85 Identities=24% Similarity=0.386 Sum_probs=76.2
Q ss_pred CCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
.+.....++|||+|||..+|+++|+++|+.||.| +++.+ .++.++|||||+|.+.++|++|++.||+..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 3455678999999999999999999999999987 56666 5788999999999999999999999999999999999
Q ss_pred EeeCCCccc
Q psy3016 108 VNKASSHQK 116 (305)
Q Consensus 108 v~~~~~~~~ 116 (305)
|.++..+..
T Consensus 85 v~~a~~~~~ 93 (101)
T 2fc9_A 85 LELQGPRGS 93 (101)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCCC
Confidence 999987654
No 113
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.7e-18 Score=130.06 Aligned_cols=85 Identities=20% Similarity=0.386 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCC-eEEEEEc-ccCCCCCcceEEEEEEcCHHHHHHHHHHhc--CceeCCeeeE
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGP-VVNVHMP-KDRVTQTHQGYGFIEFMGEEDADYAIKIMN--MIKLYGKPIR 107 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~i~~~-~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~--g~~~~g~~l~ 107 (305)
...++|||+|||..+|+++|+++|+.||. |.+|.++ .+..++.++|||||+|.+.++|.+|++.|+ +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35689999999999999999999999998 9999998 788788999999999999999999999996 5899999999
Q ss_pred EeeCCCccc
Q psy3016 108 VNKASSHQK 116 (305)
Q Consensus 108 v~~~~~~~~ 116 (305)
|.++.++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987654
No 114
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.4e-18 Score=127.85 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=72.1
Q ss_pred cCCCCceEEEcCCCc-cccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcC--ceeCCeee
Q psy3016 30 SGDGDATIYVGGLDD-KVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNM--IKLYGKPI 106 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g--~~~~g~~l 106 (305)
..+..++|||+|||. .+|+++|+++|++||.|.+|.|++++ |||||+|.+.++|.+|++.|++ ..+.|+.|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 344678999999999 99999999999999999999998753 8999999999999999999885 46999999
Q ss_pred EEeeCCCcc
Q psy3016 107 RVNKASSHQ 115 (305)
Q Consensus 107 ~v~~~~~~~ 115 (305)
.|.++....
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999998654
No 115
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.3e-18 Score=131.66 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=78.7
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCCe-EEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPV-VNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
......++|||+|||.++|+++|+++|+.||.| ..|+|+.+. +++++|||||+|.+.++|++|++. |+..+.|+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 345667899999999999999999999999999 899999998 899999999999999999999996 99999999999
Q ss_pred EeeCCCcc
Q psy3016 108 VNKASSHQ 115 (305)
Q Consensus 108 v~~~~~~~ 115 (305)
|.++..+.
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99987643
No 116
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.74 E-value=8.1e-18 Score=131.84 Aligned_cols=83 Identities=22% Similarity=0.412 Sum_probs=78.0
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
..++|||+|||.++|+++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4579999999999999999999999999999999999888999999999999999999999 799999999999999988
Q ss_pred Cccc
Q psy3016 113 SHQK 116 (305)
Q Consensus 113 ~~~~ 116 (305)
....
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 117
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=2.5e-18 Score=137.09 Aligned_cols=91 Identities=26% Similarity=0.425 Sum_probs=83.7
Q ss_pred CCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCee
Q psy3016 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKP 105 (305)
Q Consensus 26 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~ 105 (305)
.+.......++|||+|||..+|+++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 39 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 39 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 44455667789999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred eEEeeCCCccc
Q psy3016 106 IRVNKASSHQK 116 (305)
Q Consensus 106 l~v~~~~~~~~ 116 (305)
|+|.++.....
T Consensus 119 l~V~~a~~~~~ 129 (135)
T 2lea_A 119 LRVQMARYGRP 129 (135)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999987543
No 118
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.74 E-value=4.1e-18 Score=127.46 Aligned_cols=82 Identities=17% Similarity=0.355 Sum_probs=72.9
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
=.+|||+||+..+|+++|+++|++||.+... ++.+++|..+|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~-------------------------------------~v~i~~d~~tg~ 51 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVN-------------------------------------NIRLIKDKQTQQ 51 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGG-------------------------------------GEECCCCSSSSS
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEE-------------------------------------EEEEEecCCCCC
Confidence 3689999999999999999999999975422 126789999999
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCe----eecCeeeEEEEeee
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQ----YLCNRPISVSYAFK 239 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~----~~~g~~l~v~~a~~ 239 (305)
++|||||+|.+.++|.+|++.|||. .++||+|.|+||+.
T Consensus 52 srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 52 NRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp CSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred CceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 9999999999999999999999997 58999999999864
No 119
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=7.6e-19 Score=129.82 Aligned_cols=81 Identities=35% Similarity=0.538 Sum_probs=74.1
Q ss_pred ceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCCc
Q psy3016 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSH 114 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~~ 114 (305)
++|||+|||..+++++|+++|+.||.|.+|+++.+..++.++|||||+|.+.+ |.+|++.|||..+.|+.|+|+++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999888999999999999999 99999999999999999999998865
Q ss_pred cc
Q psy3016 115 QK 116 (305)
Q Consensus 115 ~~ 116 (305)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 120
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.73 E-value=1.1e-17 Score=128.23 Aligned_cols=85 Identities=24% Similarity=0.353 Sum_probs=72.9
Q ss_pred cCCCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCC
Q psy3016 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYG 103 (305)
Q Consensus 24 ~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g 103 (305)
...........++|||+|||..+|+++|+++|+.||.|..|+++ +|||||+|.+.++|++|++.|||..+.|
T Consensus 21 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 21 MHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp -------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred cccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 33444566778999999999999999999999999999999996 5999999999999999999999999999
Q ss_pred eeeEEeeCCCccc
Q psy3016 104 KPIRVNKASSHQK 116 (305)
Q Consensus 104 ~~l~v~~~~~~~~ 116 (305)
+.|.|.++.....
T Consensus 93 ~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 93 QPLEVVYSKLPAK 105 (108)
T ss_dssp EECEEESCSCCC-
T ss_pred eEEEEEEecCCCC
Confidence 9999999887543
No 121
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=125.16 Aligned_cols=79 Identities=23% Similarity=0.264 Sum_probs=71.4
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCce--eCCeeeE
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIK--LYGKPIR 107 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~--~~g~~l~ 107 (305)
....+++|||+|||..+|+++|+++|++||.|.+++++++ ||||||+|.+.++|.+|++.|++.. +.|+.|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 3446789999999999999999999999999999999753 5999999999999999999999764 7899999
Q ss_pred EeeCCCc
Q psy3016 108 VNKASSH 114 (305)
Q Consensus 108 v~~~~~~ 114 (305)
|+++..+
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9998765
No 122
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=124.96 Aligned_cols=88 Identities=27% Similarity=0.435 Sum_probs=78.7
Q ss_pred CCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCee
Q psy3016 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKP 105 (305)
Q Consensus 26 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~ 105 (305)
.+.......++|||+|||..+|+++|+++|+.|+ .|.++.+..++.++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2fc8_A 7 GPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 83 (102)
T ss_dssp TTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3445566789999999999999999999999874 6778888778999999999999999999999999999999999
Q ss_pred eEEeeCCCccc
Q psy3016 106 IRVNKASSHQK 116 (305)
Q Consensus 106 l~v~~~~~~~~ 116 (305)
|+|.++.++..
T Consensus 84 l~V~~a~~~~~ 94 (102)
T 2fc8_A 84 VTLDWAKPKGE 94 (102)
T ss_dssp CEEEECCCCCS
T ss_pred EEEEEecCCCC
Confidence 99999987654
No 123
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=9.2e-18 Score=125.88 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=74.8
Q ss_pred CCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeee
Q psy3016 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPI 106 (305)
Q Consensus 27 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l 106 (305)
........++|||+|||..+|+++|+++|+.||.|. +.++.+ .++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 12 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (97)
T 2e5j_A 12 PGEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTL 86 (97)
T ss_dssp CCSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 344556688999999999999999999999999997 666654 478999999999999999999999999999999
Q ss_pred EEeeCCCcc
Q psy3016 107 RVNKASSHQ 115 (305)
Q Consensus 107 ~v~~~~~~~ 115 (305)
+|.++..+.
T Consensus 87 ~V~~a~~~~ 95 (97)
T 2e5j_A 87 RVALARQQR 95 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCC
Confidence 999988754
No 124
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=122.51 Aligned_cols=80 Identities=26% Similarity=0.473 Sum_probs=73.8
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||.++|+++|+++|+.||.|.+|+++ +|||||+|.+.++|++|++.||+..+.|+.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 44567899999999999999999999999999999996 5899999999999999999999999999999999
Q ss_pred eCCCcccc
Q psy3016 110 KASSHQKN 117 (305)
Q Consensus 110 ~~~~~~~~ 117 (305)
++..+...
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 125
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.1e-18 Score=134.43 Aligned_cols=84 Identities=18% Similarity=0.217 Sum_probs=76.5
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+||+ ||+..+.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 44567899999999999999999999999999986666666789999999999999999999999 99999999999999
Q ss_pred eCCCc
Q psy3016 110 KASSH 114 (305)
Q Consensus 110 ~~~~~ 114 (305)
++..+
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98754
No 126
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=9.3e-18 Score=130.61 Aligned_cols=83 Identities=22% Similarity=0.241 Sum_probs=76.9
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCC---eEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeee
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGP---VVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPI 106 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l 106 (305)
.....++|||+|||.++|+++|+++|+.||. |..|+|+.+.. |+++|||||+|.+.++|++|++ +|+..+.|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 4556789999999999999999999999999 89999999975 8999999999999999999999 99999999999
Q ss_pred EEeeCCCc
Q psy3016 107 RVNKASSH 114 (305)
Q Consensus 107 ~v~~~~~~ 114 (305)
.|.++...
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99987643
No 127
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.73 E-value=6.6e-18 Score=129.83 Aligned_cols=81 Identities=20% Similarity=0.310 Sum_probs=76.5
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+||+.++++++|+++|++||.|..+ .+++|..++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v---------------------------------------~i~~d~~tg 45 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEV---------------------------------------EILLHPRTR 45 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEE---------------------------------------EEEECTTTC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEE---------------------------------------EEEECCCCC
Confidence 45789999999999999999999999999987 788999999
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeee
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 239 (305)
+++|||||+|++.++|.+|+..|||..+.|+.|+|.++..
T Consensus 46 ~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 46 KHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred ceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 9999999999999999999999999999999999999853
No 128
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=127.24 Aligned_cols=85 Identities=22% Similarity=0.287 Sum_probs=77.4
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCCeEE-EEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVN-VHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
......++|||+|||..+|+++|+++|+.||.|.. |.|+.+ .+++++|||||+|.+.++|++|++. ++..+.|+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 34456789999999999999999999999999998 889888 6899999999999999999999997 99999999999
Q ss_pred EeeCCCcc
Q psy3016 108 VNKASSHQ 115 (305)
Q Consensus 108 v~~~~~~~ 115 (305)
|.++....
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99877543
No 129
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=3.3e-18 Score=123.99 Aligned_cols=73 Identities=25% Similarity=0.367 Sum_probs=67.9
Q ss_pred CceEEEcCCCccc------cHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCe-ee
Q psy3016 34 DATIYVGGLDDKV------SETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGK-PI 106 (305)
Q Consensus 34 ~~~l~V~nLp~~~------te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~-~l 106 (305)
+++|||+|||..+ |+++|+++|++||.|.+|.+.. .+|.++|||||+|.+.++|.+|++.|||..+.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 7899999999999999999883 4788999999999999999999999999999999 88
Q ss_pred EE
Q psy3016 107 RV 108 (305)
Q Consensus 107 ~v 108 (305)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 130
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.8e-17 Score=122.94 Aligned_cols=82 Identities=23% Similarity=0.300 Sum_probs=73.1
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhc--CceeCCeeeE
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMN--MIKLYGKPIR 107 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~--g~~~~g~~l~ 107 (305)
.....++|||+|||..+|+++|+++|+.||.|.+|.++.+ +|||||+|.+.++|.+|++.|+ +..+.|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3445789999999999999999999999999999999765 5999999999999999999774 6789999999
Q ss_pred EeeCCCcccc
Q psy3016 108 VNKASSHQKN 117 (305)
Q Consensus 108 v~~~~~~~~~ 117 (305)
|.++..+...
T Consensus 85 V~~a~~~~~~ 94 (101)
T 2cq1_A 85 IQYSNHKELK 94 (101)
T ss_dssp EEECSCSSCC
T ss_pred EEEcCcccCc
Confidence 9999876543
No 131
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=131.40 Aligned_cols=82 Identities=13% Similarity=0.310 Sum_probs=74.1
Q ss_pred CCCCceEEEcCCCccccHHHHH----HHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeee
Q psy3016 31 GDGDATIYVGGLDDKVSETLMW----ELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPI 106 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l 106 (305)
....++|||+|||..+++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4457899999999999999876 7999999999998854 46789999999999999999999999999999999
Q ss_pred EEeeCCCcc
Q psy3016 107 RVNKASSHQ 115 (305)
Q Consensus 107 ~v~~~~~~~ 115 (305)
+|.++..+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998754
No 132
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.1e-17 Score=124.80 Aligned_cols=80 Identities=25% Similarity=0.371 Sum_probs=74.2
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCC-----e
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYG-----K 104 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g-----~ 104 (305)
.....++|||+|||.++|+++|+++|+.||.|..|+|+.+ |||||+|.+.++|++||+.||+..+.| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456789999999999999999999999999999999876 899999999999999999999999999 9
Q ss_pred eeEEeeCCCccc
Q psy3016 105 PIRVNKASSHQK 116 (305)
Q Consensus 105 ~l~v~~~~~~~~ 116 (305)
.|+|.++.++..
T Consensus 84 ~i~V~~a~~~~~ 95 (108)
T 1x4c_A 84 YIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEESSCCSC
T ss_pred EEEEEeCCCCCC
Confidence 999999987654
No 133
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=128.44 Aligned_cols=83 Identities=25% Similarity=0.281 Sum_probs=74.4
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhc--CceeCCeeeE
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMN--MIKLYGKPIR 107 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~--g~~~~g~~l~ 107 (305)
.....++|||+|||.++|+++|+++|++||.|.+|+|+.+ +|||||+|.+.++|.+|++.|+ +..+.|+.|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4456789999999999999999999999999999999875 5999999999999999999887 4689999999
Q ss_pred EeeCCCccccc
Q psy3016 108 VNKASSHQKNL 118 (305)
Q Consensus 108 v~~~~~~~~~~ 118 (305)
|.++..+..+.
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99998765443
No 134
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=2.4e-17 Score=135.74 Aligned_cols=87 Identities=22% Similarity=0.344 Sum_probs=79.9
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|+++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456789999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eCCCccc
Q psy3016 110 KASSHQK 116 (305)
Q Consensus 110 ~~~~~~~ 116 (305)
++.....
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9876543
No 135
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=127.05 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=76.0
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
......++|||+|||.++|+++|+++|+.||.+ +|+|+.++ +++++|||||+|.+.++|++|++ +|+..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVEL 86 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 345567899999999999999999999999954 99999997 89999999999999999999996 7999999999999
Q ss_pred eeCCCcc
Q psy3016 109 NKASSHQ 115 (305)
Q Consensus 109 ~~~~~~~ 115 (305)
.++....
T Consensus 87 ~~~~~~~ 93 (102)
T 1wez_A 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9877554
No 136
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=124.25 Aligned_cols=87 Identities=33% Similarity=0.490 Sum_probs=79.9
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
....++|||+|||..+++++|+++|+.||.|..+ .++.|..
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v---------------------------------------~i~~~~~ 49 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDI---------------------------------------QIPLDYE 49 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCE---------------------------------------ECCCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEE---------------------------------------EEEecCC
Confidence 3456899999999999999999999999999876 6788888
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+..+..+
T Consensus 50 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2cqb_A 50 TEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIK 95 (102)
T ss_dssp SCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCC
Confidence 8999999999999999999999999999999999999999877554
No 137
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=1.5e-17 Score=127.91 Aligned_cols=81 Identities=20% Similarity=0.174 Sum_probs=72.8
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCC-CeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSG-PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
.....++|||+|||.++|+++|+++|+.|| .|..+++..+ .++|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 445678999999999999999999999999 9999998643 47899999999999999999999999999999999
Q ss_pred eeCCCc
Q psy3016 109 NKASSH 114 (305)
Q Consensus 109 ~~~~~~ 114 (305)
+++...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998754
No 138
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=119.92 Aligned_cols=77 Identities=27% Similarity=0.434 Sum_probs=71.1
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHh-cCceeCCeeeEE
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM-NMIKLYGKPIRV 108 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l-~g~~~~g~~l~v 108 (305)
.....++|||+|||..+|+++|+++|+.||.|.+|+++.+ +|||||+|.+.++|.+|++.| ++..+.|+.|+|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3456789999999999999999999999999999999864 599999999999999999998 999999999999
Q ss_pred eeCC
Q psy3016 109 NKAS 112 (305)
Q Consensus 109 ~~~~ 112 (305)
+++.
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 139
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.6e-17 Score=120.25 Aligned_cols=81 Identities=28% Similarity=0.425 Sum_probs=73.8
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
......++|||+|||..+|+++|+++|+.||.|.+|++++ +||||+|.+.++|++|++.||+..+.|+.|+|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456788999999999999999999999999999999963 59999999999999999999999999999999
Q ss_pred eeCCCcccc
Q psy3016 109 NKASSHQKN 117 (305)
Q Consensus 109 ~~~~~~~~~ 117 (305)
.++......
T Consensus 76 ~~a~~~~~~ 84 (90)
T 2dnp_A 76 ELSTKGQKK 84 (90)
T ss_dssp EESCCCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 140
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.7e-17 Score=121.93 Aligned_cols=80 Identities=21% Similarity=0.322 Sum_probs=73.2
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeC--CeeeE
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLY--GKPIR 107 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~--g~~l~ 107 (305)
.....++|||+|||..+|+++|+++|+.||.|.+|.+..+ +|||||+|.+.++|++|++.||+..+. |+.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3445689999999999999999999999999999999754 589999999999999999999999999 99999
Q ss_pred EeeCCCcc
Q psy3016 108 VNKASSHQ 115 (305)
Q Consensus 108 v~~~~~~~ 115 (305)
|.++.++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998754
No 141
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.6e-17 Score=125.40 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=71.4
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEee
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~ 110 (305)
....++|||+|||.++|+++|+++|+.||.|.+|++.. ++|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 34568999999999999999999999999999999973 569999999999999999999999999999999999
Q ss_pred CCC
Q psy3016 111 ASS 113 (305)
Q Consensus 111 ~~~ 113 (305)
+.+
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 865
No 142
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.6e-17 Score=124.36 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=72.5
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcC--ceeCCeeeE
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNM--IKLYGKPIR 107 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g--~~~~g~~l~ 107 (305)
.....++|||+|||..+|+++|+++|++||.|.+|.++.+ +|||||+|.+.++|.+|++.|++ ..+.|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3345789999999999999999999999999999999764 59999999999999999998875 458999999
Q ss_pred EeeCCCcccc
Q psy3016 108 VNKASSHQKN 117 (305)
Q Consensus 108 v~~~~~~~~~ 117 (305)
|.++..+...
T Consensus 85 V~~a~~~~~~ 94 (104)
T 1wex_A 85 FNYSTSKRIT 94 (104)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCcccc
Confidence 9999876543
No 143
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.7e-17 Score=120.23 Aligned_cols=81 Identities=25% Similarity=0.439 Sum_probs=73.8
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
......++|||+|||..+|+++|+++|+.||.|.+|++++ +||||+|.+.++|.+|++.||+..+.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 3456678999999999999999999999999999999953 59999999999999999999999999999999
Q ss_pred eeCCCcccc
Q psy3016 109 NKASSHQKN 117 (305)
Q Consensus 109 ~~~~~~~~~ 117 (305)
+++..+...
T Consensus 77 ~~a~~~~~~ 85 (92)
T 2dgt_A 77 QLSTSRLRT 85 (92)
T ss_dssp EESSCCCSC
T ss_pred EEccCCCCC
Confidence 999876543
No 144
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.72 E-value=1e-17 Score=133.51 Aligned_cols=84 Identities=20% Similarity=0.219 Sum_probs=77.6
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCC---eEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCee
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGP---VVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKP 105 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~ 105 (305)
......++|||+|||.++|+++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|++|++ +|+..+.||.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34556789999999999999999999999999 89999999986 9999999999999999999999 9999999999
Q ss_pred eEEeeCCCc
Q psy3016 106 IRVNKASSH 114 (305)
Q Consensus 106 l~v~~~~~~ 114 (305)
|.|.++...
T Consensus 117 i~V~~a~~~ 125 (136)
T 2hgl_A 117 IEVFKSHRT 125 (136)
T ss_dssp EEEEECCHH
T ss_pred EEEEECChH
Confidence 999988644
No 145
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-18 Score=130.20 Aligned_cols=85 Identities=18% Similarity=0.325 Sum_probs=76.8
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||.++|+++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|.+|++ ||+..+.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3456789999999999999999999999999888 667776678899999999999999999999 99999999999999
Q ss_pred eCCCccc
Q psy3016 110 KASSHQK 116 (305)
Q Consensus 110 ~~~~~~~ 116 (305)
++..+..
T Consensus 91 ~a~~~~~ 97 (101)
T 1fj7_A 91 KPKGRDG 97 (101)
T ss_dssp CCSCCCC
T ss_pred EcCCCCC
Confidence 9987543
No 146
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.8e-17 Score=125.14 Aligned_cols=81 Identities=23% Similarity=0.458 Sum_probs=74.9
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|+++|+.||.|.+|+++.+ +|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4456789999999999999999999999999999999876 5999999999999999999999999999999999
Q ss_pred eCCCccc
Q psy3016 110 KASSHQK 116 (305)
Q Consensus 110 ~~~~~~~ 116 (305)
++.....
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9987654
No 147
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=5.5e-17 Score=121.75 Aligned_cols=78 Identities=21% Similarity=0.430 Sum_probs=71.2
Q ss_pred CcCCCCceEEEcCCCc-cccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 29 ESGDGDATIYVGGLDD-KVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
......++|||+|||. .+++++|+++|+.||.|.+|++ ++|||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455688999999998 9999999999999999999999 369999999999999999999999999999999
Q ss_pred EeeCCCc
Q psy3016 108 VNKASSH 114 (305)
Q Consensus 108 v~~~~~~ 114 (305)
|+++...
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9998764
No 148
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.2e-17 Score=123.30 Aligned_cols=80 Identities=29% Similarity=0.436 Sum_probs=73.8
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|+++|+.||.|..|++.++ +|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 4456789999999999999999999999999999999764 5999999999999999999999999999999999
Q ss_pred eCCCcc
Q psy3016 110 KASSHQ 115 (305)
Q Consensus 110 ~~~~~~ 115 (305)
++....
T Consensus 85 ~a~~~~ 90 (99)
T 2cpj_A 85 FACHSA 90 (99)
T ss_dssp ESSCCS
T ss_pred EcCCCC
Confidence 998754
No 149
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.9e-17 Score=124.13 Aligned_cols=87 Identities=26% Similarity=0.502 Sum_probs=79.8
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
....++|||+|||.++++++|+++|+.||.|..+ .++.+..
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v---------------------------------------~i~~~~~ 49 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEV---------------------------------------VVVKDRE 49 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEE---------------------------------------EECCCSS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEeCCC
Confidence 3456899999999999999999999999999877 6788888
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.|+..+...
T Consensus 50 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 50 TQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDN 95 (102)
T ss_dssp SCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCCC
T ss_pred CCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 8999999999999999999999999999999999999999877654
No 150
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.71 E-value=1.9e-17 Score=123.95 Aligned_cols=83 Identities=22% Similarity=0.470 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCccccHHHHH----HHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeee
Q psy3016 31 GDGDATIYVGGLDDKVSETLMW----ELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPI 106 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l 106 (305)
....++|||+|||..+|+++|+ ++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999999974 46688999999999999999999999999999999
Q ss_pred EEeeCCCccc
Q psy3016 107 RVNKASSHQK 116 (305)
Q Consensus 107 ~v~~~~~~~~ 116 (305)
+|.++.....
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999987643
No 151
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=4.1e-18 Score=121.41 Aligned_cols=75 Identities=27% Similarity=0.418 Sum_probs=71.5
Q ss_pred eEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 36 ~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
+|||+|||.++|+++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|.+|++ +++..+.|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999998889999999999999999999999 4899999999999875
No 152
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.9e-17 Score=122.73 Aligned_cols=85 Identities=26% Similarity=0.310 Sum_probs=78.7
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+|||..+|+++|+++|+.||.|..+ .++.|..++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~~~ 47 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSEL---------------------------------------HYPIDSLTK 47 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEE---------------------------------------ECCCCTTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEE---------------------------------------EEEecCCCC
Confidence 46789999999999999999999999999877 678888789
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++..+...
T Consensus 48 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 48 KPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEA 91 (99)
T ss_dssp CCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTT
T ss_pred CcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCccc
Confidence 99999999999999999999999999999999999999877543
No 153
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=125.56 Aligned_cols=88 Identities=30% Similarity=0.409 Sum_probs=80.6
Q ss_pred cccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC
Q psy3016 117 NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196 (305)
Q Consensus 117 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~ 196 (305)
.....++|||+|||..+++++|+++|+.||.|..+ .++.+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v---------------------------------------~i~~~~ 51 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRI---------------------------------------YLAKDK 51 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEE---------------------------------------EEEECS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEE---------------------------------------EEeecC
Confidence 34457899999999999999999999999999877 678888
Q ss_pred CCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 197 ~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+..+...
T Consensus 52 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 52 TTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTNS 98 (103)
T ss_dssp SSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCS
T ss_pred CCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCCC
Confidence 88999999999999999999999999999999999999999877554
No 154
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.71 E-value=5.8e-17 Score=122.83 Aligned_cols=80 Identities=25% Similarity=0.325 Sum_probs=73.0
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|+++|+.||.|..|+++ ++||||+|.+.++|++|++.||+..+.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 34567899999999999999999999999999999985 4699999999999999999999999999999999
Q ss_pred eCCCcccc
Q psy3016 110 KASSHQKN 117 (305)
Q Consensus 110 ~~~~~~~~ 117 (305)
++......
T Consensus 79 ~a~~~~~~ 86 (103)
T 2dgu_A 79 FAKPPDQK 86 (103)
T ss_dssp ECCCCCCC
T ss_pred EcCCCccc
Confidence 99876543
No 155
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1e-16 Score=130.74 Aligned_cols=83 Identities=30% Similarity=0.517 Sum_probs=78.7
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|+++|+.||.|.++.++.+..++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eCC
Q psy3016 110 KAS 112 (305)
Q Consensus 110 ~~~ 112 (305)
++.
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 985
No 156
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.8e-17 Score=126.01 Aligned_cols=81 Identities=23% Similarity=0.331 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEee
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~ 110 (305)
....++|||+|||.++|+++|+++|+.| .|.+|.|+.++. |+++|||||+|.+.++|++|+ .+|+..+.||.|.|..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 3445799999999999999999999999 899999999974 899999999999999999999 5999999999999988
Q ss_pred CCCc
Q psy3016 111 ASSH 114 (305)
Q Consensus 111 ~~~~ 114 (305)
+...
T Consensus 90 a~~~ 93 (109)
T 2dnn_A 90 ATER 93 (109)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 7643
No 157
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=122.45 Aligned_cols=85 Identities=28% Similarity=0.566 Sum_probs=78.7
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+||+..+++++|+++|+.||.|..+ .++.|..++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v---------------------------------------~i~~~~~~~ 44 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNI---------------------------------------VLMKDSDTG 44 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEE---------------------------------------EEECCSSSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEE---------------------------------------EEeecCCCC
Confidence 45789999999999999999999999999877 678888889
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
+++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+..+...
T Consensus 45 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 45 RSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDG 88 (95)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCC
T ss_pred ceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCC
Confidence 99999999999999999999999999999999999999777554
No 158
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.71 E-value=3.6e-17 Score=126.47 Aligned_cols=86 Identities=28% Similarity=0.460 Sum_probs=79.2
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+.++++++|+++|+.||.|..+ .++.|..+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~~ 63 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSA---------------------------------------KVFIDKQT 63 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEE---------------------------------------EEEECSSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEECCCC
Confidence 346899999999999999999999999999877 67888888
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
+.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|++.+...
T Consensus 64 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 108 (115)
T 2cpz_A 64 NLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 108 (115)
T ss_dssp CSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCC
T ss_pred CCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCcC
Confidence 999999999999999999999999999999999999999876543
No 159
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.71 E-value=2.3e-17 Score=119.72 Aligned_cols=80 Identities=34% Similarity=0.679 Sum_probs=75.5
Q ss_pred ccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCc
Q psy3016 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201 (305)
Q Consensus 122 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~ 201 (305)
.+|||+|||.++++++|+++|+.||.|..+ .++.+..++.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~---------------------------------------~i~~~~~~~~~ 42 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSG---------------------------------------HVMWDMQTGSS 42 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEE---------------------------------------EEEECTTTCCE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEE---------------------------------------EEEEcCCCCCc
Confidence 579999999999999999999999999877 67888888999
Q ss_pred cceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 202 ~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
+|||||+|.+.++|.+|+..|||..+.|+.|+|.|+.++
T Consensus 43 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 43 RGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 999999999999999999999999999999999999765
No 160
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=1.5e-17 Score=144.19 Aligned_cols=82 Identities=13% Similarity=0.268 Sum_probs=77.1
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCC--CeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEee
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSG--PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~ 110 (305)
..++|||+||+.++|+++|+++|+.|| .|.+|+|+.++.+++++|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999998999999999999999999999999999999999999999
Q ss_pred CCCc
Q psy3016 111 ASSH 114 (305)
Q Consensus 111 ~~~~ 114 (305)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8743
No 161
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.2e-17 Score=124.19 Aligned_cols=87 Identities=24% Similarity=0.336 Sum_probs=79.5
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
....++|||+||+..+++++|+++|+.||.|..+ .++.|..
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v---------------------------------------~i~~~~~ 50 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDV---------------------------------------YIPREPH 50 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEE---------------------------------------ECCBCSS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEEeCCC
Confidence 3456899999999999999999999999999877 6788888
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+......
T Consensus 51 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dnm_A 51 TKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRD 96 (103)
T ss_dssp SCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCSC
T ss_pred CCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCCC
Confidence 8999999999999999999999999999999999999999766543
No 162
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-16 Score=119.79 Aligned_cols=79 Identities=32% Similarity=0.373 Sum_probs=72.5
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccC--CCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQS--GPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
.....++|||+|||..+|+++|+++|+.| |.|..|++. +|||||+|.+.++|.+|++.||+..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 44567899999999999999999999999 999999873 58999999999999999999999999999999
Q ss_pred EeeCCCccc
Q psy3016 108 VNKASSHQK 116 (305)
Q Consensus 108 v~~~~~~~~ 116 (305)
|.++.....
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpd_A 83 VTLAKPVDK 91 (99)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999987654
No 163
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.70 E-value=2.5e-17 Score=120.64 Aligned_cols=82 Identities=30% Similarity=0.616 Sum_probs=75.0
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+||+.++++++|+++|+.||.|..+ .++.+..++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~~~ 45 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDA---------------------------------------RVVKDMATG 45 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEE---------------------------------------EEEECTTTC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEE---------------------------------------EEEecCCCC
Confidence 35789999999999999999999999999877 678888889
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+..+
T Consensus 46 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 46 KSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred ccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 99999999999999999999999999999999999999754
No 164
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.70 E-value=5.1e-17 Score=131.57 Aligned_cols=83 Identities=27% Similarity=0.443 Sum_probs=76.0
Q ss_pred CCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
.......++|||+|||..+|+++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 345566789999999999999999999999999999999876 579999999999999999999999999999999
Q ss_pred EeeCCCcc
Q psy3016 108 VNKASSHQ 115 (305)
Q Consensus 108 v~~~~~~~ 115 (305)
|.++.++.
T Consensus 142 v~~a~~~~ 149 (150)
T 2i2y_A 142 VELSNGEK 149 (150)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 99987653
No 165
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.2e-17 Score=121.27 Aligned_cols=90 Identities=82% Similarity=1.311 Sum_probs=79.9
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+|||..+++++|+++|+.||.|..+. .++.|..++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~--------------------------------------~i~~~~~~g 45 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTP--------------------------------------KIMRDPDTG 45 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCC--------------------------------------EECCCTTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE--------------------------------------EEEEcCCCC
Confidence 467899999999999999999999999997541 357777889
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCcCCCC
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRH 247 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~~~~~ 247 (305)
.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+..+..+..++
T Consensus 46 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~ 93 (96)
T 1x5t_A 46 NSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGSGP 93 (96)
T ss_dssp SCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCCCCCC
T ss_pred CcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCCCCCC
Confidence 999999999999999999999999999999999999998877655444
No 166
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=9.4e-18 Score=128.23 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=77.6
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCC---eEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCee
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGP---VVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKP 105 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~ 105 (305)
......++|||+|||.++|+++|+++|+.||. |..|.|+.+.. |+++|||||+|.+.++|++|++ +++..+.|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34567889999999999999999999999998 89999999986 9999999999999999999999 9999999999
Q ss_pred eEEeeCCCc
Q psy3016 106 IRVNKASSH 114 (305)
Q Consensus 106 l~v~~~~~~ 114 (305)
|.|.++...
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999988754
No 167
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=3.7e-17 Score=122.25 Aligned_cols=83 Identities=28% Similarity=0.556 Sum_probs=77.4
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
.++|||+||+..+++++|+++|+.||.|..+ .++.+..+|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~~g~ 42 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINL---------------------------------------KMMFDPQTGR 42 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEE---------------------------------------ECCBCTTTCC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEEeCCCCCc
Confidence 4789999999999999999999999999877 6788888899
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
++|||||+|.+.++|.+|+..|||..++|+.|+|.|+..+..
T Consensus 43 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 43 SKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp BCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 999999999999999999999999999999999999977643
No 168
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.5e-17 Score=123.74 Aligned_cols=88 Identities=30% Similarity=0.525 Sum_probs=80.2
Q ss_pred cccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC
Q psy3016 117 NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196 (305)
Q Consensus 117 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~ 196 (305)
.....++|||+||+..+++++|+++|+.||.|..+ .++.+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~ 51 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNT---------------------------------------HMPKDR 51 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEE---------------------------------------ECCBCS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEecC
Confidence 34457899999999999999999999999999877 678888
Q ss_pred CCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 197 ~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|.|+..+...
T Consensus 52 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 52 VTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKN 98 (105)
T ss_dssp SSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSCC
T ss_pred CCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCcC
Confidence 88999999999999999999999999999999999999999776543
No 169
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.70 E-value=1.1e-16 Score=122.77 Aligned_cols=77 Identities=23% Similarity=0.425 Sum_probs=71.3
Q ss_pred CCCCceEEEcCCCcc-ccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 31 GDGDATIYVGGLDDK-VSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
....++|||+|||.. +|+++|+++|+.||.|.+|.+ ++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344689999999999 999999999999999999999 56999999999999999999999999999999999
Q ss_pred eCCCcc
Q psy3016 110 KASSHQ 115 (305)
Q Consensus 110 ~~~~~~ 115 (305)
++....
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997544
No 170
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=1.1e-17 Score=126.45 Aligned_cols=82 Identities=30% Similarity=0.558 Sum_probs=76.4
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEee
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~ 110 (305)
....++|||+|||..+|+++|+++|+.||.|.+|+++.+. ++.++|||||+|.+.++|++|++ ++..++|+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 89999999999999999999999 99999999999998
Q ss_pred CCCcc
Q psy3016 111 ASSHQ 115 (305)
Q Consensus 111 ~~~~~ 115 (305)
+..+.
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 87544
No 171
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.70 E-value=1.1e-17 Score=123.76 Aligned_cols=81 Identities=25% Similarity=0.351 Sum_probs=70.9
Q ss_pred ccccccCCCchhcHHHHHHHHhhcC--cccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 122 ANIFIGNLDPEVDEKLLYDTFSAFG--VILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 122 ~~l~v~nl~~~~t~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
.+|||+||+.++|+++|+++|+.|| .|..+ .++.|..+|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v---------------------------------------~i~~~~~~g 42 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEI---------------------------------------KFFENRANG 42 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCE---------------------------------------EEEECTTTC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEE---------------------------------------EEEecCCCC
Confidence 4799999999999999999999999 88766 778898899
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
+++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.+..
T Consensus 43 ~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~ 84 (90)
T 3p5t_L 43 QSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLE 84 (90)
T ss_dssp CEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC----
T ss_pred ccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCc
Confidence 999999999999999999999999999999999999986653
No 172
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.7e-17 Score=125.56 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=71.9
Q ss_pred cCCCCceEEEcCCCcc-ccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhc--CceeCCeee
Q psy3016 30 SGDGDATIYVGGLDDK-VSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMN--MIKLYGKPI 106 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~--g~~~~g~~l 106 (305)
.....++|||+|||.+ +|+++|+++|+.||.|.+|.|++ ++|||||+|.+.++|.+|++.|+ +..+.|+.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3556889999999998 99999999999999999999964 46999999999999999999886 456999999
Q ss_pred EEeeCCCccc
Q psy3016 107 RVNKASSHQK 116 (305)
Q Consensus 107 ~v~~~~~~~~ 116 (305)
+|.++..+..
T Consensus 95 ~V~~a~~~~~ 104 (112)
T 1x4f_A 95 KVDLSEKYKK 104 (112)
T ss_dssp EEEEECSCSS
T ss_pred EEEECccccc
Confidence 9999876543
No 173
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.70 E-value=8.5e-17 Score=134.05 Aligned_cols=86 Identities=27% Similarity=0.339 Sum_probs=80.3
Q ss_pred CcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
......++|||+|||..+++++|+++|+.||.|.+|.|+.+. ++.++|||||+|.+.++|.+|++.||+..+.|+.|.|
T Consensus 83 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V 161 (177)
T 2f3j_A 83 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 161 (177)
T ss_dssp SSCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345667899999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred eeCCCcc
Q psy3016 109 NKASSHQ 115 (305)
Q Consensus 109 ~~~~~~~ 115 (305)
.++....
T Consensus 162 ~~a~~~~ 168 (177)
T 2f3j_A 162 QLVASQI 168 (177)
T ss_dssp EEESSGG
T ss_pred EEecCCC
Confidence 9987654
No 174
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.3e-18 Score=129.69 Aligned_cols=84 Identities=26% Similarity=0.414 Sum_probs=74.6
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCe----EEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCee
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPV----VNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKP 105 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i----~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~ 105 (305)
.....++|||+|||..+|+++|+++|+.||.| ..+++. ++.++|||||+|.+.++|.+|++.|++..+.|+.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 34467899999999999999999999999998 455554 6788999999999999999999999999999999
Q ss_pred eEEeeCCCcccc
Q psy3016 106 IRVNKASSHQKN 117 (305)
Q Consensus 106 l~v~~~~~~~~~ 117 (305)
|+|.++......
T Consensus 97 l~v~~a~~~~~~ 108 (115)
T 2cpx_A 97 LVIEFGKNKKQR 108 (115)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEEccCCCCC
Confidence 999999876543
No 175
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.70 E-value=3.4e-17 Score=119.38 Aligned_cols=80 Identities=35% Similarity=0.542 Sum_probs=75.1
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+|||.++++++|+++|+.||.|..+ .++.|..++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v---------------------------------------~i~~~~~~~ 46 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDI---------------------------------------QIPLDYETE 46 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEE---------------------------------------ECCEETTTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEE---------------------------------------EEEECCCCC
Confidence 46789999999999999999999999999877 678888889
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEee
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 238 (305)
.++|||||+|.+.++|.+|+..|||..+.|+.|+|+|++
T Consensus 47 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 47 KHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp EECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 999999999999999999999999999999999999974
No 176
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=7.9e-17 Score=122.72 Aligned_cols=87 Identities=18% Similarity=0.432 Sum_probs=79.2
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccC-C
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRD-P 196 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d-~ 196 (305)
....++|||+|||..+++++|+++|+.||.|..+ .++.+ .
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~ 52 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTV---------------------------------------RLPKKMT 52 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEE---------------------------------------ECCCCCS
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEE---------------------------------------EEecCCC
Confidence 3457899999999999999999999999999877 67777 6
Q ss_pred CCCCccceEEEEeCChHHHHHHHHHh-cCeeecCeeeEEEEeeecCCc
Q psy3016 197 DTGNSKGFAFINYASFEASDASIDAM-HGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 197 ~~~~~~g~afV~f~~~~~A~~Al~~l-~~~~~~g~~l~v~~a~~~~~~ 243 (305)
.++.++|||||+|.+.++|.+|+..| |+..|.|+.|+|.|+..+...
T Consensus 53 ~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 53 GTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTV 100 (107)
T ss_dssp SSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCCC
T ss_pred CCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCCC
Confidence 78999999999999999999999999 999999999999999877554
No 177
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.4e-17 Score=121.36 Aligned_cols=84 Identities=26% Similarity=0.362 Sum_probs=77.4
Q ss_pred cccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC
Q psy3016 117 NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196 (305)
Q Consensus 117 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~ 196 (305)
.....++|||+|||..+++++|+++|+.||.|..+ .++.+.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v---------------------------------------~i~~~~ 51 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADV---------------------------------------SIVYDQ 51 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEE---------------------------------------EEEECS
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEE---------------------------------------EEEEcC
Confidence 34457899999999999999999999999999877 678888
Q ss_pred CCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeee
Q psy3016 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239 (305)
Q Consensus 197 ~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 239 (305)
.++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|++.
T Consensus 52 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 52 QSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp SSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred CCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 8899999999999999999999999999999999999999853
No 178
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=8.2e-17 Score=123.47 Aligned_cols=87 Identities=30% Similarity=0.483 Sum_probs=80.1
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
....++|||+||+..+|+++|+++|..||.|..+ .++.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~ 52 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYV---------------------------------------RVVLHPD 52 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEE---------------------------------------ECCBCSS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEecCC
Confidence 3456899999999999999999999999999877 7788888
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhc------CeeecCeeeEEEEeeecCCc
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMH------GQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~------~~~~~g~~l~v~~a~~~~~~ 243 (305)
++.++|||||+|.+.++|.+|+..|| +..+.|+.|+|.|+..+...
T Consensus 53 ~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 53 TEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCC
T ss_pred CCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCccC
Confidence 89999999999999999999999999 99999999999999877554
No 179
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.2e-17 Score=121.66 Aligned_cols=85 Identities=26% Similarity=0.507 Sum_probs=78.3
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+..+++++|+++|+.||.|..+ .++.|..+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~~ 48 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEV---------------------------------------VMIYDAEK 48 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEE---------------------------------------EECCCTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEeCCCC
Confidence 346889999999999999999999999999877 67888888
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
+.++|||||+|.+.++|.+|+. ||+..+.|+.|+|.++..+...
T Consensus 49 ~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~~ 92 (99)
T 2dgs_A 49 QRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSK 92 (99)
T ss_dssp CSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCCCC
T ss_pred CCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCccc
Confidence 9999999999999999999999 9999999999999999877554
No 180
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.69 E-value=7.4e-17 Score=124.62 Aligned_cols=87 Identities=29% Similarity=0.576 Sum_probs=79.5
Q ss_pred cccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC
Q psy3016 117 NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196 (305)
Q Consensus 117 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~ 196 (305)
.....++|||+||+..+++++|+++|+.||.|..+ .++.+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~ 51 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA---------------------------------------RVVKDM 51 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEE---------------------------------------EEEECT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEEcC
Confidence 34457899999999999999999999999999877 678888
Q ss_pred CCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 197 ~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+..+..
T Consensus 52 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 52 ATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 97 (115)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCC
Confidence 8899999999999999999999999999999999999999976643
No 181
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.69 E-value=1.2e-16 Score=131.47 Aligned_cols=81 Identities=30% Similarity=0.496 Sum_probs=77.4
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
...++|||+|||..+|+++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|+++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 44789999999999999999999999999999999999888999999999999999999999999999999999999987
Q ss_pred C
Q psy3016 112 S 112 (305)
Q Consensus 112 ~ 112 (305)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 4
No 182
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.69 E-value=7.1e-17 Score=122.82 Aligned_cols=87 Identities=33% Similarity=0.462 Sum_probs=79.3
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
....++|||+||+..+++++|+++|+.||.|..+ .++.|..
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~ 50 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYEL---------------------------------------TVLKDRF 50 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEE---------------------------------------ECCCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE---------------------------------------EEEecCC
Confidence 3456889999999999999999999999999877 7788888
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeee---cCeeeEEEEeeecCCc
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYL---CNRPISVSYAFKKDSK 243 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~---~g~~l~v~~a~~~~~~ 243 (305)
++.++|||||+|.+.++|.+|+..||+..+ .|+.|+|.|+..+..+
T Consensus 51 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 51 TGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG 99 (106)
T ss_dssp SCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccccc
Confidence 899999999999999999999999999987 8999999999776543
No 183
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.69 E-value=2.2e-16 Score=132.80 Aligned_cols=86 Identities=29% Similarity=0.461 Sum_probs=81.0
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEee
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~ 110 (305)
....++|||+|||..+|+++|+++|+.||.|.+|.+..+..++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 46778999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCccc
Q psy3016 111 ASSHQK 116 (305)
Q Consensus 111 ~~~~~~ 116 (305)
+.+...
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987643
No 184
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.9e-17 Score=123.77 Aligned_cols=95 Identities=25% Similarity=0.319 Sum_probs=79.1
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
....++|||+||+..+|+++|+++|+.||.|..+.. ...-...++.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~-------------------------------~~~~~v~i~~~~~ 60 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKR-------------------------------TGQPMIHIYLDKE 60 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSS-------------------------------SCCBSEECCBCTT
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccc-------------------------------cCccCEEEEEeCC
Confidence 345689999999999999999999999999973100 0000116788888
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++..+...
T Consensus 61 ~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 61 TGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp TCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCCS
T ss_pred CCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCCC
Confidence 8999999999999999999999999999999999999999776543
No 185
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=3.8e-17 Score=122.05 Aligned_cols=82 Identities=17% Similarity=0.239 Sum_probs=73.3
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34467899999999999999999999999988766 2367899999999999999999999999999999999999
Q ss_pred eCCCccc
Q psy3016 110 KASSHQK 116 (305)
Q Consensus 110 ~~~~~~~ 116 (305)
++..+..
T Consensus 87 ~a~~~~~ 93 (96)
T 1fjc_A 87 YTGEKGG 93 (96)
T ss_dssp ECSSSCC
T ss_pred EcCCCCC
Confidence 9876543
No 186
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.69 E-value=1.9e-17 Score=125.02 Aligned_cols=81 Identities=25% Similarity=0.322 Sum_probs=76.6
Q ss_pred cccccccCCCc------hhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCccc
Q psy3016 121 GANIFIGNLDP------EVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMR 194 (305)
Q Consensus 121 ~~~l~v~nl~~------~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 194 (305)
.++|||+|||. ++++++|+++|+.||.|..+ .++.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v---------------------------------------~i~~ 46 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNM---------------------------------------EFPI 46 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEE---------------------------------------ECCE
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEE---------------------------------------EEEE
Confidence 57899999999 99999999999999999887 7889
Q ss_pred CCCCCCccceEEEEeCChHHHHHHHHHhcCeeecC-eeeEEEEeeec
Q psy3016 195 DPDTGNSKGFAFINYASFEASDASIDAMHGQYLCN-RPISVSYAFKK 240 (305)
Q Consensus 195 d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g-~~l~v~~a~~~ 240 (305)
|..+|+++|||||+|.+.++|.+|+..|||..+.| +.|+|.++.++
T Consensus 47 d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 47 DEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp ETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence 98899999999999999999999999999999999 99999999764
No 187
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.69 E-value=8.5e-17 Score=123.27 Aligned_cols=85 Identities=26% Similarity=0.472 Sum_probs=78.8
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+..+|+++|+++|+.||.|..+ .++.+..+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~~ 64 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNI---------------------------------------HLNLDRRT 64 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEE---------------------------------------ECCBCTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEEecCCC
Confidence 346889999999999999999999999999877 67888888
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
+.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+..+..
T Consensus 65 ~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 65 GFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 108 (110)
T ss_dssp SSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESSC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCCC
Confidence 99999999999999999999999999999999999999987654
No 188
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.5e-17 Score=123.03 Aligned_cols=84 Identities=27% Similarity=0.561 Sum_probs=78.2
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+..+++++|+++|+.||.|..+ .++.|..+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v---------------------------------------~i~~~~~~ 61 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNI---------------------------------------HLNLDRRT 61 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEE---------------------------------------EEEECTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEE---------------------------------------EEEecCCC
Confidence 346789999999999999999999999999877 67888888
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
+.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+..+.
T Consensus 62 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 62 GYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp SSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred CceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCC
Confidence 9999999999999999999999999999999999999997764
No 189
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.69 E-value=7.2e-17 Score=122.57 Aligned_cols=86 Identities=30% Similarity=0.569 Sum_probs=78.0
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+..+++++|+++|+.||.|..+ .++.+. +
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~-~ 52 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDEC---------------------------------------TVLRGP-D 52 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEE---------------------------------------EEEECS-S
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEECC-C
Confidence 357899999999999999999999999999877 667776 6
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecC---eeeEEEEeeecCCcC
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCN---RPISVSYAFKKDSKG 244 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g---~~l~v~~a~~~~~~~ 244 (305)
+.++|||||+|.+.++|.+|+..|||..+.| +.|+|.|+..+..+.
T Consensus 53 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~~~ 101 (105)
T 2dnh_A 53 GSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKESG 101 (105)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCCCS
T ss_pred CCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcccC
Confidence 8999999999999999999999999999988 999999998776543
No 190
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.1e-17 Score=122.12 Aligned_cols=79 Identities=20% Similarity=0.419 Sum_probs=70.9
Q ss_pred cCCCCceEEEcCCCc-cccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 30 SGDGDATIYVGGLDD-KVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
.....++|||+|||. .+|+++|+++|+.||.|.+|.+ ++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE--------ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 445688999999998 9999999999999999999999 3699999999999999999999999999999999
Q ss_pred eeCCCccc
Q psy3016 109 NKASSHQK 116 (305)
Q Consensus 109 ~~~~~~~~ 116 (305)
+++.....
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99876543
No 191
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.9e-18 Score=133.96 Aligned_cols=87 Identities=25% Similarity=0.366 Sum_probs=80.7
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEE--------EEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeC
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVN--------VHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLY 102 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~ 102 (305)
....++|||+|||..+|+++|+++|+.||.|.. |+++.++.++.++|||||+|.+.++|.+|++.||+..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346789999999999999999999999999999 999999888999999999999999999999999999999
Q ss_pred CeeeEEeeCCCcccc
Q psy3016 103 GKPIRVNKASSHQKN 117 (305)
Q Consensus 103 g~~l~v~~~~~~~~~ 117 (305)
|+.|+|.++..+...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999998876543
No 192
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=8.3e-17 Score=121.20 Aligned_cols=84 Identities=19% Similarity=0.307 Sum_probs=77.0
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+|||..+|+++|+++|+.||.|..+ .++.+. +
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~-~ 54 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDL---------------------------------------RLVTNR-A 54 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEE---------------------------------------EEEECT-T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEE---------------------------------------EEEECC-C
Confidence 346889999999999999999999999999877 677776 7
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
+.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+.++..
T Consensus 55 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 55 GKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGPS 98 (100)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCSC
T ss_pred CCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999999999999999999977654
No 193
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.69 E-value=8.7e-18 Score=158.84 Aligned_cols=154 Identities=16% Similarity=0.264 Sum_probs=107.9
Q ss_pred HHHHHhccCCCeEEEEEcc----cC-CCCCcceEE--EEEEcCHHHHHHHHHHhcCceeCC---------------eeeE
Q psy3016 50 LMWELFVQSGPVVNVHMPK----DR-VTQTHQGYG--FIEFMGEEDADYAIKIMNMIKLYG---------------KPIR 107 (305)
Q Consensus 50 ~L~~~F~~~G~i~~i~~~~----~~-~~~~~~g~a--fV~f~~~e~A~~Ai~~l~g~~~~g---------------~~l~ 107 (305)
.|..+|..+|+|..|..+. +. .+....|++ |+.|.....+..++..++.....+ ..+.
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3788999999998873332 21 111122333 778877655443332221111110 0111
Q ss_pred Ee-eCCCccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEec
Q psy3016 108 VN-KASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIG 186 (305)
Q Consensus 108 v~-~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (305)
+. ............++|||+||+..+|+++|.++|+.||.|..|
T Consensus 88 ~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v----------------------------------- 132 (437)
T 3pgw_S 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRI----------------------------------- 132 (437)
T ss_pred hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEE-----------------------------------
Confidence 11 111111222345799999999999999999999999999877
Q ss_pred cCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 187 NLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 187 ~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
.|+.|..++.++|||||+|.+.++|.+||..|||.+|.|+.|.|.|+.....
T Consensus 133 ----~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 133 ----HMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred ----EeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 6788888899999999999999999999999999999999999999987654
No 194
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=8.5e-17 Score=119.61 Aligned_cols=81 Identities=30% Similarity=0.502 Sum_probs=75.7
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+|||..+++++|+++|+.||.|..+ .++.+..+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v---------------------------------------~i~~~~~~ 54 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKV---------------------------------------TIMKDKDT 54 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEE---------------------------------------EECCCSSS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEeCCCC
Confidence 356899999999999999999999999999877 67888888
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEee
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 238 (305)
+.++|||||+|.+.++|.+|++.||+..+.|+.|+|.|++
T Consensus 55 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 55 RKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp CCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 9999999999999999999999999999999999999974
No 195
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.9e-17 Score=120.35 Aligned_cols=80 Identities=23% Similarity=0.383 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCC-eEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcC-ceeCCeeeEE
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGP-VVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNM-IKLYGKPIRV 108 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g-~~~~g~~l~v 108 (305)
....++|||+|||..+|+++|+++|+.||. |..+.+. ++|||||+|.+.++|++|++.||+ ..+.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6666662 469999999999999999999999 9999999999
Q ss_pred eeCCCcccc
Q psy3016 109 NKASSHQKN 117 (305)
Q Consensus 109 ~~~~~~~~~ 117 (305)
+++..+...
T Consensus 78 ~~a~~~~~~ 86 (93)
T 2cqh_A 78 DYSVSKKLR 86 (93)
T ss_dssp EECCCCCCC
T ss_pred EEccCcccc
Confidence 999876543
No 196
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=7.4e-17 Score=122.13 Aligned_cols=86 Identities=30% Similarity=0.591 Sum_probs=77.6
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
....++|||+||+..+|+++|+++|+.||.|..+ .++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~-- 50 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSA---------------------------------------KVMME-- 50 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEE---------------------------------------EEEEC--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEEcC--
Confidence 3457899999999999999999999999999877 56666
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCcC
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~~ 244 (305)
++.++|||||+|.+.++|.+|+..||+..+.|+.|+|.|+..+..+.
T Consensus 51 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2d9p_A 51 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 97 (103)
T ss_dssp SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCCC
T ss_pred CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccccCC
Confidence 68999999999999999999999999999999999999998776543
No 197
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.68 E-value=4e-17 Score=126.35 Aligned_cols=81 Identities=41% Similarity=0.696 Sum_probs=73.3
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
..+|||+|||.++|+++|+++|+.||.|..+ +++.|. +.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v---------------------------------------~i~~d~--~~ 43 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSC---------------------------------------KVVCDE--NG 43 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEE---------------------------------------EEEEET--TE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEE---------------------------------------EEeecC--CC
Confidence 4679999999999999999999999999877 567764 45
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
++|||||+|.+.++|.+|+..|||..+.|+.|+|.++..+..
T Consensus 44 ~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~ 85 (115)
T 4f25_A 44 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 85 (115)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC
T ss_pred CCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccc
Confidence 799999999999999999999999999999999999876554
No 198
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=119.66 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=73.5
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEE-EEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i-~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
.....++|||+|||..+|+++|+++|+.||.|.+| .++.+..+ +.|||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34557899999999999999999999999999999 58877643 44999999999999999999999999999999
Q ss_pred eeCCCcc
Q psy3016 109 NKASSHQ 115 (305)
Q Consensus 109 ~~~~~~~ 115 (305)
.++.++.
T Consensus 87 ~~a~~~~ 93 (96)
T 2e44_A 87 AYIPDEM 93 (96)
T ss_dssp EECCCCC
T ss_pred EEcCccc
Confidence 9998763
No 199
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.7e-17 Score=125.23 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=70.6
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
...++|||+|||..+|+++|+++|+.||.|..|.++. ++|||||+|.+.++|++|++.|||..+.|+.|.|.|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3467999999999999999999999999999999864 4589999999999999999999999999999999998
Q ss_pred CC
Q psy3016 112 SS 113 (305)
Q Consensus 112 ~~ 113 (305)
..
T Consensus 82 ~~ 83 (111)
T 1whx_A 82 PI 83 (111)
T ss_dssp ET
T ss_pred CC
Confidence 64
No 200
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=123.95 Aligned_cols=83 Identities=31% Similarity=0.515 Sum_probs=76.5
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+||+.++|+++|+++|+.||.|..+ .++.+. ++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~-~g 45 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEV---------------------------------------LLIKDR-TS 45 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEE---------------------------------------EEECST-TT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEEECC-CC
Confidence 45789999999999999999999999999876 677776 79
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+..+..
T Consensus 46 ~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 46 KSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp TCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred CcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 9999999999999999999999999999999999999976643
No 201
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=117.43 Aligned_cols=80 Identities=20% Similarity=0.340 Sum_probs=70.2
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEee
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~ 110 (305)
....++|||+|||.++|+++|+++|+.||.|.+| +.+..++. ||||+|.+.++|.+|++ |++..+.|+.|.|++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999998 44444444 99999999999999999 999999999999998
Q ss_pred CCCccc
Q psy3016 111 ASSHQK 116 (305)
Q Consensus 111 ~~~~~~ 116 (305)
+..+..
T Consensus 79 a~~~~~ 84 (94)
T 2e5g_A 79 REQKEF 84 (94)
T ss_dssp SCCSCC
T ss_pred CCcCCC
Confidence 876543
No 202
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.68 E-value=1.2e-16 Score=125.43 Aligned_cols=88 Identities=26% Similarity=0.523 Sum_probs=80.5
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
....++|||+||+..+|+++|+++|+.||.|..+ .++.|..
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~ 59 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNI---------------------------------------HLNLDRR 59 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEE---------------------------------------ECCBCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEecCC
Confidence 3346799999999999999999999999999877 6788888
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCcC
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~~ 244 (305)
++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+..+....
T Consensus 60 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 106 (126)
T 3ex7_B 60 TGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPK 106 (126)
T ss_dssp TSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSSCC
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCCC
Confidence 89999999999999999999999999999999999999998876543
No 203
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=120.35 Aligned_cols=89 Identities=28% Similarity=0.423 Sum_probs=75.3
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+.++++++|+++|+.||.|...... ..-...++.|..+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~-------------------------------~~~~v~i~~~~~~ 59 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKT-------------------------------GQPMINLYTDRET 59 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTT-------------------------------TEESEEEEECTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeecccc-------------------------------ccccEEEEecCCC
Confidence 356899999999999999999999999999861000 0000167888888
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEee
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 238 (305)
|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.+|+
T Consensus 60 g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 60 GKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp CSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 9999999999999999999999999999999999999974
No 204
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.67 E-value=1.5e-17 Score=144.20 Aligned_cols=83 Identities=24% Similarity=0.314 Sum_probs=76.1
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcC--cccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFG--VILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
..++|||+||+.++|+++|+++|+.|| .|..+ .|+.|..
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v---------------------------------------~i~~d~~ 107 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEI---------------------------------------KFFENRA 107 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEE---------------------------------------EEEECTT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEE---------------------------------------EEEecCC
Confidence 356899999999999999999999999 88876 7889988
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
+++++|||||+|.+.++|.+||..||+..|.|+.|+|.++....
T Consensus 108 tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~~ 151 (229)
T 3q2s_C 108 NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQF 151 (229)
T ss_dssp TCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHHH
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCCc
Confidence 99999999999999999999999999999999999999987543
No 205
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=6.4e-17 Score=121.31 Aligned_cols=84 Identities=23% Similarity=0.371 Sum_probs=75.6
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC--
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD-- 197 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~-- 197 (305)
..++|||+||+.++++++|+++|+.||.|..+ .++.+..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~~~ 44 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSC---------------------------------------TISKKKNKA 44 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEE---------------------------------------EEEEEECTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEecCCCC
Confidence 35789999999999999999999999999876 5666655
Q ss_pred -CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 198 -TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 198 -~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+..+..
T Consensus 45 gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 45 GVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATK 90 (98)
T ss_dssp CCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSC
T ss_pred CCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCC
Confidence 568999999999999999999999999999999999999977654
No 206
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=1.8e-16 Score=116.61 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
...++|||+|||..+|+++|+++|++| .|.++++. +++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 356899999999999999999999999 99999984 47899999999999999999999999999999999998
Q ss_pred CCc
Q psy3016 112 SSH 114 (305)
Q Consensus 112 ~~~ 114 (305)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 207
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.67 E-value=9.8e-17 Score=126.79 Aligned_cols=86 Identities=26% Similarity=0.411 Sum_probs=79.0
Q ss_pred cccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC
Q psy3016 117 NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196 (305)
Q Consensus 117 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~ 196 (305)
.....++|||+||+.++++++|+++|+.||.|..+ .++.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v---------------------------------------~i~~d~ 82 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADV---------------------------------------SIVYDQ 82 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEE---------------------------------------EEECCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEecC
Confidence 34457899999999999999999999999999877 678888
Q ss_pred CCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 197 ~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+..+.
T Consensus 83 ~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 83 QSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp SSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 889999999999999999999999999999999999999997654
No 208
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=120.35 Aligned_cols=84 Identities=23% Similarity=0.419 Sum_probs=76.8
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+..+++++|+++|+.|| |..+ .++.+..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v---------------------------------------~i~~~~~~ 52 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAV---------------------------------------RLPREPSN 52 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEE---------------------------------------ECCBCSSC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEE---------------------------------------EEecCCCC
Confidence 3568999999999999999999999999 8776 67888877
Q ss_pred -CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 199 -GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 199 -~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
+.++|||||+|.+.++|.+|+ .||+..+.|+.|+|.++..+..+
T Consensus 53 ~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 53 PERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQDK 97 (104)
T ss_dssp TTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCCCC
T ss_pred CCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCCC
Confidence 899999999999999999999 89999999999999999877554
No 209
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=127.27 Aligned_cols=86 Identities=26% Similarity=0.460 Sum_probs=79.3
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+.++++++|+++|+.||.|..+ .++.|..+
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~~ 80 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESV---------------------------------------KIVCDRET 80 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEE---------------------------------------EEEEETTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEEcCCC
Confidence 346899999999999999999999999999877 67888888
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
++++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+..+..+
T Consensus 81 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 81 RQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQR 125 (139)
T ss_dssp TEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 999999999999999999999999999999999999999877554
No 210
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.67 E-value=7.7e-17 Score=123.39 Aligned_cols=85 Identities=27% Similarity=0.555 Sum_probs=78.2
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
....++|||+||+..+++++|+++|+.||.|..+ .++.+..
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~ 63 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESI---------------------------------------QLMMDSE 63 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEE---------------------------------------EEEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEEcCC
Confidence 3456899999999999999999999999999877 6788888
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.++.
T Consensus 64 ~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 64 TGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp TTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 89999999999999999999999999999999999999997653
No 211
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.66 E-value=9.7e-17 Score=127.06 Aligned_cols=86 Identities=17% Similarity=0.412 Sum_probs=77.1
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+.++|+++|+++|+.||.|... ++.+++|..+
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~-------------------------------------~v~i~~d~~t 63 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSS-------------------------------------NVRVIKDKQT 63 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTT-------------------------------------TEECCBCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccee-------------------------------------eEEEEEcCCC
Confidence 346789999999999999999999999999761 1167999889
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCe----eecCeeeEEEEeeecCC
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQ----YLCNRPISVSYAFKKDS 242 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~----~~~g~~l~v~~a~~~~~ 242 (305)
|+++|||||+|.+. +|.+|+..|||. .++|+.|+|.|+..+..
T Consensus 64 g~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 64 QLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp SSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCC
T ss_pred CCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCC
Confidence 99999999999999 999999999999 99999999999976543
No 212
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=117.49 Aligned_cols=82 Identities=18% Similarity=0.389 Sum_probs=74.3
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
.++|||+||+.++|+++|+++|+.||.|..+ .++.+..++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~---------------------------------------~i~~~~~~~~ 44 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMI---------------------------------------DMPVERMHPH 44 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEE---------------------------------------ECCEETTEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEE---------------------------------------EEEeCCCCCC
Confidence 4689999999999999999999999999876 6677766555
Q ss_pred -ccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 201 -SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 201 -~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
++|||||+|.+.++|.+|+..|||..++|+.|+|+++....
T Consensus 45 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 45 LSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPW 86 (88)
T ss_dssp EECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCCC
T ss_pred CCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCCC
Confidence 89999999999999999999999999999999999996553
No 213
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.66 E-value=9.4e-17 Score=124.60 Aligned_cols=81 Identities=27% Similarity=0.461 Sum_probs=75.2
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+.++++++|+++|+.||.|..+ .++.|..+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~---------------------------------------~i~~~~~~ 78 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISA---------------------------------------KVFIDKQT 78 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEE---------------------------------------EECCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEEeCCCC
Confidence 346899999999999999999999999999877 67888888
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEee
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 238 (305)
++++|||||+|.+.++|.+|++.|||..++|+.|+|.|++
T Consensus 79 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 79 SLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp SCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred CCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 9999999999999999999999999999999999999974
No 214
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.1e-16 Score=118.45 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=76.1
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+|||..+++++|+++|..||.|..+ .++.+..+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~---------------------------------------~~~~~~~~ 53 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGS---------------------------------------VCLKYNEK 53 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTT---------------------------------------CEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccce---------------------------------------EEEEECCC
Confidence 346789999999999999999999999999865 66778788
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
+.++|||||+|.+.++|.+|++.|||..|.|+.|+|.++..+
T Consensus 54 g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 54 GMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp SCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred CCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 999999999999999999999999999999999999998654
No 215
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.7e-16 Score=120.62 Aligned_cols=86 Identities=23% Similarity=0.405 Sum_probs=78.8
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
....++|||+||+..+++++|+++|+.||.|..+ .++.+..
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v---------------------------------------~i~~~~~ 53 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDC---------------------------------------VIMKDKT 53 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEE---------------------------------------EEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEeeCCC
Confidence 3456899999999999999999999999999887 6788888
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
++.++|||||+|.+.++|.+|+.. |+..|.|+.|+|.++..+...
T Consensus 54 ~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 54 TNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGMQ 98 (105)
T ss_dssp SCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSSCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCCCC
Confidence 899999999999999999999998 999999999999999877554
No 216
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=1.9e-16 Score=119.87 Aligned_cols=84 Identities=20% Similarity=0.398 Sum_probs=76.5
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+..+++++|+++|+.|| |..+ .++.|..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v---------------------------------------~i~~~~~~ 52 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSV---------------------------------------RLVRDKDT 52 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEE---------------------------------------EEEECSSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEE---------------------------------------EEeecCCC
Confidence 4568999999999999999999999997 7766 67888888
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
++++|||||+|.+.++|.+|+ .||+..+.|+.|+|.|+..+...
T Consensus 53 g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 53 DKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQD 96 (103)
T ss_dssp CSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCCCC
T ss_pred CccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCCC
Confidence 999999999999999999999 89999999999999999776543
No 217
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.66 E-value=5e-17 Score=130.59 Aligned_cols=87 Identities=28% Similarity=0.316 Sum_probs=74.3
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEE--Eccc---CCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVH--MPKD---RVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGK 104 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~--~~~~---~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~ 104 (305)
.....++|||+|||..+|+++|+++|+.||.|..+. ++.+ ..++.++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 456678999999999999999999999999987741 1111 13578999999999999999999999999999999
Q ss_pred eeEEeeCCCccc
Q psy3016 105 PIRVNKASSHQK 116 (305)
Q Consensus 105 ~l~v~~~~~~~~ 116 (305)
.|.|.++.....
T Consensus 121 ~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 PMVVQFARSARP 132 (143)
T ss_dssp ECEEEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999976543
No 218
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=7.2e-16 Score=120.57 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=67.3
Q ss_pred ceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceE-EEEEEcCHHHHHHHHHHhcCceeCC--eeeEEeeC
Q psy3016 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGY-GFIEFMGEEDADYAIKIMNMIKLYG--KPIRVNKA 111 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~-afV~f~~~e~A~~Ai~~l~g~~~~g--~~l~v~~~ 111 (305)
..|||+||+..+|+++|+++|++||.|.+|.|+.. .|| |||+|.+.++|.+|++.|||..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 45789999999999999999999999999999652 286 9999999999999999999999988 68999998
Q ss_pred CCcc
Q psy3016 112 SSHQ 115 (305)
Q Consensus 112 ~~~~ 115 (305)
....
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8654
No 219
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.2e-16 Score=123.94 Aligned_cols=80 Identities=14% Similarity=0.088 Sum_probs=71.9
Q ss_pred CceEEEcCC----CccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcC----HHH----HHHHHH--HhcCc
Q psy3016 34 DATIYVGGL----DDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMG----EED----ADYAIK--IMNMI 99 (305)
Q Consensus 34 ~~~l~V~nL----p~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~----~e~----A~~Ai~--~l~g~ 99 (305)
.+.|||+|| |+.+++.+|+++|+.||+|.+|+++.|+.||.++|||||+|.+ .+. |.+|+. .++|.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 368999999 9999999999999999999999999999999999999999996 333 788888 78999
Q ss_pred eeCCeeeEEeeCCC
Q psy3016 100 KLYGKPIRVNKASS 113 (305)
Q Consensus 100 ~~~g~~l~v~~~~~ 113 (305)
.+.|+.|+|..-..
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999997543
No 220
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.1e-16 Score=118.03 Aligned_cols=86 Identities=24% Similarity=0.410 Sum_probs=76.0
Q ss_pred cccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC
Q psy3016 117 NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196 (305)
Q Consensus 117 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~ 196 (305)
.....++|||+|||..+|+++|+++|+.||.|..+ .++.+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v---------------------------------------~i~~~~ 51 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDV---------------------------------------EIIFNE 51 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEE---------------------------------------EEECCT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEecC
Confidence 33456899999999999999999999999999876 566664
Q ss_pred CCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 197 ~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
. .++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+..+...
T Consensus 52 ~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 52 R--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMT 96 (103)
T ss_dssp T--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCC
T ss_pred C--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCC
Confidence 3 38999999999999999999999999999999999999877554
No 221
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.66 E-value=5.1e-16 Score=130.39 Aligned_cols=86 Identities=23% Similarity=0.383 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEee
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~ 110 (305)
....++|||+|||..+|+++|+++|+.||.|..|.++.+..++.++|||||+|.+.++|.+|++. ++..+.|+.|.|.+
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 34568999999999999999999999999999999999988899999999999999999999985 89999999999999
Q ss_pred CCCcccc
Q psy3016 111 ASSHQKN 117 (305)
Q Consensus 111 ~~~~~~~ 117 (305)
+.++...
T Consensus 180 a~~k~~~ 186 (196)
T 1l3k_A 180 ALSKQEM 186 (196)
T ss_dssp CC-----
T ss_pred cCChhHh
Confidence 9876543
No 222
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=121.17 Aligned_cols=86 Identities=27% Similarity=0.543 Sum_probs=78.2
Q ss_pred ccccccccccCCCchhcHHHHHHHHhh-cCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSA-FGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~-~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~ 196 (305)
....++|||+||+.++|+++|+++|+. ||.|..+ .++.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v---------------------------------------~i~~~~ 46 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGG---------------------------------------KVVLDQ 46 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEE---------------------------------------EEEECT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEE---------------------------------------EEEECC
Confidence 345689999999999999999999999 9999877 678887
Q ss_pred CCCCccceEEEEeCChHHHHHHHHHhcCee-ecCeeeEEEEeeecCCc
Q psy3016 197 DTGNSKGFAFINYASFEASDASIDAMHGQY-LCNRPISVSYAFKKDSK 243 (305)
Q Consensus 197 ~~~~~~g~afV~f~~~~~A~~Al~~l~~~~-~~g~~l~v~~a~~~~~~ 243 (305)
++.++|||||+|.+.++|.+|+..||+.. +.|+.|+|.++..+...
T Consensus 47 -~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 47 -TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 93 (104)
T ss_dssp -TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSC
T ss_pred -CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcC
Confidence 89999999999999999999999999999 99999999999766543
No 223
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.4e-16 Score=117.86 Aligned_cols=85 Identities=20% Similarity=0.439 Sum_probs=75.3
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
....++|||+||+..+++++|+++|+.||.|..+ .++.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~ 52 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSC---------------------------------------KMITEHT 52 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEE---------------------------------------EEECCCC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEE---------------------------------------EEEecCC
Confidence 3456899999999999999999999999999877 5666643
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
.++|||||+|.+.++|.+|+..||+..+.|+.|+|.|+..+..+
T Consensus 53 --~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 53 --SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ 96 (103)
T ss_dssp --SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTCC
T ss_pred --CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCccc
Confidence 36899999999999999999999999999999999999876544
No 224
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=6.4e-16 Score=126.49 Aligned_cols=81 Identities=25% Similarity=0.448 Sum_probs=76.3
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCC--eeeEE
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYG--KPIRV 108 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g--~~l~v 108 (305)
....++|||+|||..+|+++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|++.|||..+.| +.|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3456899999999999999999999999999999999998889999999999999999999999999999988 99999
Q ss_pred eeC
Q psy3016 109 NKA 111 (305)
Q Consensus 109 ~~~ 111 (305)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 225
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.66 E-value=2.5e-16 Score=134.86 Aligned_cols=81 Identities=26% Similarity=0.506 Sum_probs=75.5
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
..++|||+|||..+|+++|+++|+.||.|.+|+|+.+. +.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45689999999999999999999999999999999985 4478999999999999999999999999999999999998
Q ss_pred Ccc
Q psy3016 113 SHQ 115 (305)
Q Consensus 113 ~~~ 115 (305)
++.
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 754
No 226
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.66 E-value=1.6e-16 Score=118.38 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=74.1
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+|||..+++++|+++|+.||.|..+ .++.+..++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~---------------------------------------~~~~~~~~g 54 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGS---------------------------------------VCLKYNEKG 54 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTC---------------------------------------CEEEECTTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccce---------------------------------------EEEEeCCCC
Confidence 45789999999999999999999999999865 667787889
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEee
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 238 (305)
.++|||||+|.+.++|.+|++.||+..+.|+.|+|.++.
T Consensus 55 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 55 MPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 999999999999999999999999999999999999875
No 227
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=119.75 Aligned_cols=83 Identities=23% Similarity=0.565 Sum_probs=76.8
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCccc-chhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVIL-QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
...++|||+|||.++++++|+++|+.||.|. .+ .++.|..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v---------------------------------------~i~~~~~ 47 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSV---------------------------------------KIIRNRL 47 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEE---------------------------------------EEEECSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEE---------------------------------------EEeecCC
Confidence 3468899999999999999999999999998 76 6788888
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCee----eEEEEeeec
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRP----ISVSYAFKK 240 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~----l~v~~a~~~ 240 (305)
++.++|||||+|.+.++|.+|+..|||..+.|+. |+|.|++..
T Consensus 48 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 48 TGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp SCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred CCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence 8999999999999999999999999999999999 999998655
No 228
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-15 Score=113.81 Aligned_cols=79 Identities=23% Similarity=0.348 Sum_probs=71.4
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|| .+|+++|+++|+.||.|.+|.+. .++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3446789999996 89999999999999999999994 467999999999999999999999999999999999
Q ss_pred eCCCccc
Q psy3016 110 KASSHQK 116 (305)
Q Consensus 110 ~~~~~~~ 116 (305)
++..+..
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9987654
No 229
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8.7e-17 Score=125.86 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=73.4
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCe----EEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeee
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPV----VNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPI 106 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i----~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l 106 (305)
....++|||+|||.++|+++|+++|+.||.| ..|.|+.+. +|+++|||||+|.+.++|++|++. |+..+.||.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3557899999999999999999999999986 689999885 899999999999999999999995 9999999999
Q ss_pred EEeeCCC
Q psy3016 107 RVNKASS 113 (305)
Q Consensus 107 ~v~~~~~ 113 (305)
.|..+..
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9887654
No 230
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=1.4e-16 Score=125.09 Aligned_cols=82 Identities=21% Similarity=0.294 Sum_probs=73.9
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeE--EEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeE
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVV--NVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIR 107 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~ 107 (305)
.....++|||+|||+++|+++|+++|+.| .|. .|+|+.++. |+++|||||+|.+.++|++|++ +++..+.||.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 44567899999999999999999999999 677 899999986 9999999999999999999999 478999999999
Q ss_pred EeeCCCc
Q psy3016 108 VNKASSH 114 (305)
Q Consensus 108 v~~~~~~ 114 (305)
|.++..+
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9887643
No 231
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.65 E-value=3.8e-17 Score=130.59 Aligned_cols=83 Identities=19% Similarity=0.203 Sum_probs=74.3
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||.++|+++|+++|+.|| |.+|+|+.++. ++++|||||+|.+.++|++|| .+|+..+.|+.|.|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 445678999999999999999999999999 67999999975 999999999999999999999 689999999999999
Q ss_pred eCCCcc
Q psy3016 110 KASSHQ 115 (305)
Q Consensus 110 ~~~~~~ 115 (305)
++....
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 887654
No 232
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.65 E-value=3.4e-16 Score=127.67 Aligned_cols=81 Identities=15% Similarity=0.177 Sum_probs=72.5
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCC--eeeEE
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYG--KPIRV 108 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g--~~l~v 108 (305)
.....+|||+||+..+|+++|+++|++||.|.+|.+..+. ++|||||+|.+.++|++|++.|||..|.| +.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 3445689999999999999999999999999999996542 57999999999999999999999999966 99999
Q ss_pred eeCCCcc
Q psy3016 109 NKASSHQ 115 (305)
Q Consensus 109 ~~~~~~~ 115 (305)
+++..+.
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9998754
No 233
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-16 Score=120.28 Aligned_cols=81 Identities=21% Similarity=0.299 Sum_probs=71.1
Q ss_pred cCCCCceEEE--cCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCcee-----C
Q psy3016 30 SGDGDATIYV--GGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKL-----Y 102 (305)
Q Consensus 30 ~~~~~~~l~V--~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~-----~ 102 (305)
.....++||| |||+..+|+++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++.|||..+ .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3345688999 889999999999999999999999988643 59999999999999999999999988 6
Q ss_pred CeeeEEeeCCCccc
Q psy3016 103 GKPIRVNKASSHQK 116 (305)
Q Consensus 103 g~~l~v~~~~~~~~ 116 (305)
|+.|.|.++.....
T Consensus 95 g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 95 KITLYLNFVEKVQW 108 (114)
T ss_dssp EEECEEEEESCCCC
T ss_pred CcEEEEEecccCcc
Confidence 89999998875443
No 234
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.5e-16 Score=118.14 Aligned_cols=85 Identities=25% Similarity=0.420 Sum_probs=75.7
Q ss_pred cccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC
Q psy3016 117 NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196 (305)
Q Consensus 117 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~ 196 (305)
.....++|||+||+..+++++|+++|+.|+.+ .++.+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~------------------------------------------~~~~~~ 48 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRA------------------------------------------RIVTDR 48 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEE------------------------------------------EEEECS
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEE------------------------------------------EEEecC
Confidence 34457899999999999999999999988654 457777
Q ss_pred CCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 197 ~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|++.+...
T Consensus 49 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2fc8_A 49 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEG 95 (102)
T ss_dssp SSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCSS
T ss_pred CCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCCC
Confidence 78999999999999999999999999999999999999999877654
No 235
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.8e-16 Score=120.59 Aligned_cols=80 Identities=25% Similarity=0.405 Sum_probs=70.0
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCC---CCcceEEEEEEcCHHHHHHHHHHhcCceeCCeee
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVT---QTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPI 106 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~---~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l 106 (305)
.....++|||+|||.++|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|++|++.|+ .++|+.+
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~ 80 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLY 80 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEE
Confidence 345678999999999999999999999999999 888888766 7899999999999999999999884 4778877
Q ss_pred EEeeCC
Q psy3016 107 RVNKAS 112 (305)
Q Consensus 107 ~v~~~~ 112 (305)
.+..+.
T Consensus 81 ~~~~~~ 86 (114)
T 2dnl_A 81 LCVSSP 86 (114)
T ss_dssp EEECCS
T ss_pred EeccCC
Confidence 776544
No 236
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=6.9e-16 Score=121.30 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=71.5
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceE-EEEEEcCHHHHHHHHHHhcCceeCC--eeeE
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGY-GFIEFMGEEDADYAIKIMNMIKLYG--KPIR 107 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~-afV~f~~~e~A~~Ai~~l~g~~~~g--~~l~ 107 (305)
...-.+|||+||++.+|+++|+++|++||.|.+|++..+ ++|| |||+|.+.++|.+|++.|||..|.| +.|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 344557889999999999999999999999999998764 3577 9999999999999999999999998 8999
Q ss_pred EeeCCCcc
Q psy3016 108 VNKASSHQ 115 (305)
Q Consensus 108 v~~~~~~~ 115 (305)
|++++...
T Consensus 100 I~~ak~~~ 107 (130)
T 3zzy_A 100 IDFSKLTS 107 (130)
T ss_dssp EEECSCSS
T ss_pred EEecCCCc
Confidence 99998654
No 237
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=117.41 Aligned_cols=81 Identities=31% Similarity=0.580 Sum_probs=74.4
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+|||..+++++|+++|+.||.|..+ .++.|..
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~- 53 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKV---------------------------------------TICKDRE- 53 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEE---------------------------------------EEEECTT-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEEECCC-
Confidence 346899999999999999999999999999877 6677765
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeee
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 239 (305)
+.++|||||+|.+.++|.+|+..||+..+.|+.|+|.|++.
T Consensus 54 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 54 GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 89999999999999999999999999999999999999853
No 238
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.9e-16 Score=121.50 Aligned_cols=84 Identities=24% Similarity=0.386 Sum_probs=76.7
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
....++|||+||+..+|+++|+++|+.||.|..+ .++.+..
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~ 54 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEA---------------------------------------VVITDRQ 54 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEE---------------------------------------EESCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEE---------------------------------------EEEEcCC
Confidence 3456899999999999999999999999999877 6788888
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
+++++|||||+|.+.++|.+|+..+|+ .|.|+.|+|.|+....
T Consensus 55 ~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~ 97 (116)
T 2cqd_A 55 TGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLGA 97 (116)
T ss_dssp SCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTTC
T ss_pred CCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccCC
Confidence 899999999999999999999999998 8999999999986543
No 239
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-16 Score=120.81 Aligned_cols=84 Identities=26% Similarity=0.497 Sum_probs=77.3
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+||+..+++++|+++|+.||.|..+ .++.+..+|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~---------------------------------------~i~~~~~~g 47 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSF---------------------------------------RLVYDRETG 47 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEE---------------------------------------EEEEETTTT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEE---------------------------------------EEEeCCCCC
Confidence 35789999999999999999999999999877 678888889
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+..+..
T Consensus 48 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 90 (104)
T 1p1t_A 48 KPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKN 90 (104)
T ss_dssp EEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTH
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccc
Confidence 9999999999999999999999999999999999999876543
No 240
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.65 E-value=1.5e-16 Score=129.87 Aligned_cols=83 Identities=18% Similarity=0.328 Sum_probs=76.2
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcC--cccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFG--VILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
..++|||+||+.++|+++|+++|+.|| .|..+ .++.|..
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v---------------------------------------~i~~d~~ 94 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVEL---------------------------------------KFAENRA 94 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEE---------------------------------------EEEECTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEE---------------------------------------EEEecCC
Confidence 357899999999999999999999999 88776 7889989
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
+|+++|||||+|.+.++|.+|+..|||..|+|+.|+|.++..+.
T Consensus 95 tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~~ 138 (156)
T 3n9u_C 95 NGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQN 138 (156)
T ss_dssp TCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHHH
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCCc
Confidence 99999999999999999999999999999999999999997653
No 241
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.65 E-value=1.8e-16 Score=112.87 Aligned_cols=75 Identities=23% Similarity=0.413 Sum_probs=70.6
Q ss_pred cccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCcc
Q psy3016 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSK 202 (305)
Q Consensus 123 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~ 202 (305)
+|||+|||.++++++|+++|+.||.|..+ .++.+..++.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~~~~~~ 41 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDA---------------------------------------MLMFDKTTNRHR 41 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEE---------------------------------------CCCBCSSSTTSC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEEecCCCCCcC
Confidence 48999999999999999999999999877 778888889999
Q ss_pred ceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEe
Q psy3016 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237 (305)
Q Consensus 203 g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a 237 (305)
|||||+|.+.++|.+|+. +|+..++|+.|+|.+|
T Consensus 42 g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 42 GFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp BEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred cEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 999999999999999998 9999999999999875
No 242
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.65 E-value=1.3e-16 Score=130.61 Aligned_cols=81 Identities=22% Similarity=0.480 Sum_probs=76.9
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
..++|||+|||..+|+++|+++|+.||.|..++++.+..+|.++|||||+|.+.++|.+|++ +++..+.|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 45699999999999999999999999999999999998889999999999999999999998 89999999999999987
Q ss_pred Cc
Q psy3016 113 SH 114 (305)
Q Consensus 113 ~~ 114 (305)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 243
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=7e-16 Score=113.82 Aligned_cols=78 Identities=19% Similarity=0.436 Sum_probs=63.0
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCce--eCCeeeE
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIK--LYGKPIR 107 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~--~~g~~l~ 107 (305)
......+|||+|||.++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++ +++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 4556789999999999999999999999999999999874 78999999999999983 45544 5599999
Q ss_pred EeeCCCccc
Q psy3016 108 VNKASSHQK 116 (305)
Q Consensus 108 v~~~~~~~~ 116 (305)
|.++.++..
T Consensus 78 v~~a~~k~~ 86 (89)
T 3d2w_A 78 ISNAEPKHN 86 (89)
T ss_dssp EEECC----
T ss_pred EEEcCCCCc
Confidence 999886543
No 244
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=7.2e-16 Score=131.45 Aligned_cols=85 Identities=28% Similarity=0.488 Sum_probs=80.3
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEee
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~ 110 (305)
....++|||+|||..+|+++|+++|+.||.|..|+++.+..++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 34568999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCcc
Q psy3016 111 ASSHQ 115 (305)
Q Consensus 111 ~~~~~ 115 (305)
+....
T Consensus 202 a~~~~ 206 (216)
T 2qfj_A 202 AVTPP 206 (216)
T ss_dssp CSSCS
T ss_pred ecCCC
Confidence 88764
No 245
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.64 E-value=2e-16 Score=116.33 Aligned_cols=80 Identities=26% Similarity=0.434 Sum_probs=74.6
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
.++|||+|||.++++++|+++|+.||.|..+ .++.+..++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~~~~ 46 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRV---------------------------------------TILCDKFSGH 46 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEE---------------------------------------EEEESCSSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEE---------------------------------------EEEecCCCCC
Confidence 4789999999999999999999999999877 6788888899
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
++|||||+|.+.++|.+|+ .|||..+.|+.|+|.+++.+
T Consensus 47 ~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 47 PKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp CCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred cceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 9999999999999999999 89999999999999998653
No 246
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.7e-16 Score=116.41 Aligned_cols=82 Identities=24% Similarity=0.422 Sum_probs=73.2
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
....++|||+||+..+|+++|+++|+.||.|. ++.+ .
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~------------------------------------------~~~~-~ 48 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIK------------------------------------------VPQN-Q 48 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEE------------------------------------------CCBC-S
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE------------------------------------------EEEC-C
Confidence 34568999999999999999999999999883 3555 5
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
+++++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+..+..
T Consensus 49 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 49 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp SSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCC
T ss_pred CCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCC
Confidence 688999999999999999999999999999999999999977643
No 247
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.64 E-value=3.9e-16 Score=118.87 Aligned_cols=81 Identities=21% Similarity=0.411 Sum_probs=75.1
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
....++|||+||+..+|+++|+++|+.||.|..+ .++.+.
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~- 65 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKA---------------------------------------AVHYDR- 65 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEE---------------------------------------EEEECT-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEECC-
Confidence 3456899999999999999999999999999877 678887
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEee
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 238 (305)
++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+.
T Consensus 66 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 66 SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 89999999999999999999999999999999999999984
No 248
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.64 E-value=6.4e-16 Score=146.05 Aligned_cols=86 Identities=26% Similarity=0.421 Sum_probs=80.4
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|||..+|+++|.++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+||+.|||..|.|+.|.|.
T Consensus 98 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 98 QGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eCCCcc
Q psy3016 110 KASSHQ 115 (305)
Q Consensus 110 ~~~~~~ 115 (305)
++....
T Consensus 178 ~a~~~~ 183 (437)
T 3pgw_S 178 VERGRT 183 (437)
T ss_pred EeCCCC
Confidence 988643
No 249
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.64 E-value=1.1e-15 Score=124.81 Aligned_cols=81 Identities=35% Similarity=0.462 Sum_probs=75.1
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCee--eEE
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKP--IRV 108 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~--l~v 108 (305)
....++|||+|||..+|+++|+++|+.||.|..++++.+..+|.++|||||+|.+.++|.+|++.|||..+.|+. |+|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 345679999999999999999999999999999999999888999999999999999999999999999999975 888
Q ss_pred eeC
Q psy3016 109 NKA 111 (305)
Q Consensus 109 ~~~ 111 (305)
.||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 775
No 250
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.2e-16 Score=118.44 Aligned_cols=82 Identities=29% Similarity=0.546 Sum_probs=75.0
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+..+++++|+++|..||.|..+ .++.+. +
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~---------------------------------------~i~~~~-~ 52 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRA---------------------------------------DILEDK-D 52 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEE---------------------------------------EEEECT-T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEECC-C
Confidence 346899999999999999999999999999876 667775 5
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
+.++|||||+|.+.++|.+|+..||+..+.|+.|+|.|+...
T Consensus 53 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 53 GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence 899999999999999999999999999999999999998654
No 251
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.6e-16 Score=121.43 Aligned_cols=82 Identities=26% Similarity=0.422 Sum_probs=76.1
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+||+..+++++|+++|+.||.|..+ .++.|..++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~~g 64 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDV---------------------------------------RIISDRNSR 64 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEE---------------------------------------EECCSCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEE---------------------------------------EEEecCCCC
Confidence 35789999999999999999999999999877 678888889
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.|+..+.
T Consensus 65 ~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 105 (114)
T 2cq4_A 65 RSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEK 105 (114)
T ss_dssp SCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHHH
T ss_pred ccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCCc
Confidence 99999999999999999999 999999999999999987654
No 252
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.64 E-value=1.8e-16 Score=115.28 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=67.7
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
+.-|||+||+..+|+++|+++|..||.|..+ .+..
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~---------------------------------------~l~~------ 41 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSF---------------------------------------HPYL------ 41 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEE---------------------------------------EEET------
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEE---------------------------------------EEcC------
Confidence 4569999999999999999999999999976 2222
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
++|||||+|.+.++|.+|+++||+..+.|++|+|.+|.+.
T Consensus 42 ~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~ 81 (89)
T 2wbr_A 42 NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSEN 81 (89)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCHH
T ss_pred CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCHH
Confidence 6999999999999999999999999999999999999543
No 253
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.1e-16 Score=115.67 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=72.5
Q ss_pred ccccccccCCCchhcHHHHH----HHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccC
Q psy3016 120 VGANIFIGNLDPEVDEKLLY----DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRD 195 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d 195 (305)
..++|||+||+..+++++|+ ++|+.||.|..+ .++.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v---------------------------------------~i~~~ 48 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSV---------------------------------------ELSPH 48 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEE---------------------------------------EECSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEE---------------------------------------EEEeC
Confidence 35789999999999999999 999999999877 66777
Q ss_pred CCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 196 PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 196 ~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
..+ +|||||+|.+.++|.+|+..|||..+.|+.|+|.+++...
T Consensus 49 ~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 49 TDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGAS 91 (96)
T ss_dssp CST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSS
T ss_pred CCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 654 8899999999999999999999999999999999996654
No 254
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.4e-16 Score=117.53 Aligned_cols=83 Identities=18% Similarity=0.382 Sum_probs=73.0
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+.++|+++|+++|+.||.|..+ .+.. +
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~---------------------------------------~i~~---~ 57 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDI---------------------------------------DLKN---R 57 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEE---------------------------------------EECC---S
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEE---C
Confidence 346899999999999999999999999999876 3333 3
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
+.++|||||+|.+.++|.+|++.||+..|.|+.|+|.|++.+...
T Consensus 58 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 102 (109)
T 1x4a_A 58 RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGT 102 (109)
T ss_dssp SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCCC
T ss_pred CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCCC
Confidence 568999999999999999999999999999999999999776543
No 255
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=3.3e-16 Score=121.22 Aligned_cols=76 Identities=25% Similarity=0.403 Sum_probs=66.6
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCee-----e
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKP-----I 106 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~-----l 106 (305)
...++|||+|||.++|+++|+++|+.||.|..|.|+.+ |||||+|.+.++|++||+.||+..|.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45689999999999999999999999999999999765 89999999999999999999999999998 6
Q ss_pred EEeeCCCc
Q psy3016 107 RVNKASSH 114 (305)
Q Consensus 107 ~v~~~~~~ 114 (305)
+|......
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 66665543
No 256
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.63 E-value=5.4e-16 Score=113.61 Aligned_cols=80 Identities=30% Similarity=0.502 Sum_probs=73.2
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
....++|||+|||.++++++|+++|+.||.|..+ .++.+..
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~ 48 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDC---------------------------------------TIKMDPN 48 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEE---------------------------------------EEEECTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEE---------------------------------------EEeecCC
Confidence 3456899999999999999999999999999887 6788888
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEe
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a 237 (305)
++.++|||||+|.+.++|.+|+. +++..+.|+.|.|.+|
T Consensus 49 ~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 49 TGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp TCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 89999999999999999999996 5888999999999875
No 257
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.7e-16 Score=119.17 Aligned_cols=81 Identities=22% Similarity=0.280 Sum_probs=70.8
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+|||+++|+++|+++|++||.|..+ .++.+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v---------------------------------------~i~~~--- 51 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNL---------------------------------------LMLKG--- 51 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEE---------------------------------------EEETT---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEEcC---
Confidence 346889999999999999999999999999887 44543
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcC--eeecCeeeEEEEeeecCCcC
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHG--QYLCNRPISVSYAFKKDSKG 244 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~--~~~~g~~l~v~~a~~~~~~~ 244 (305)
+|||||+|++.++|.+|+..|++ ..+.|++|+|.|++.+....
T Consensus 52 ---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 52 ---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT 96 (105)
T ss_dssp ---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCCC
T ss_pred ---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCCc
Confidence 79999999999999999998864 78999999999998765543
No 258
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.2e-16 Score=120.59 Aligned_cols=84 Identities=26% Similarity=0.487 Sum_probs=77.6
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+||+..+|+++|+++|..||.|..+ .++.|..++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~~g 66 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDC---------------------------------------VVMRDPASK 66 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEE---------------------------------------EEECCTTTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEEECCCCC
Confidence 45889999999999999999999999999877 678888889
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
.++|||||+|.+.++|.+|+.. ++..|.|+.|+|.++..+...
T Consensus 67 ~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~~ 109 (116)
T 1x4b_A 67 RSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREES 109 (116)
T ss_dssp SCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCCC
T ss_pred CcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCccC
Confidence 9999999999999999999998 999999999999999877554
No 259
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4.8e-16 Score=119.47 Aligned_cols=84 Identities=17% Similarity=0.253 Sum_probs=74.7
Q ss_pred ccccccccCCCchhcHHHHH---HHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLY---DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~---~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~ 196 (305)
..++|||+|||..+++++|. ++|+.||.|..+ .++.+.
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v---------------------------------------~i~~~~ 54 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKV---------------------------------------VINNST 54 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEE---------------------------------------EEECCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEE---------------------------------------EEecCC
Confidence 46789999999999999999 999999999877 556665
Q ss_pred CCC---CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 197 DTG---NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 197 ~~~---~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
.++ .++|||||+|.+.++|.+|+..|||..++|+.|+|.|+..+..
T Consensus 55 ~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 55 SYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYC 103 (111)
T ss_dssp SCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCSC
T ss_pred CcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecccccc
Confidence 543 5669999999999999999999999999999999999987753
No 260
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.8e-16 Score=121.33 Aligned_cols=87 Identities=22% Similarity=0.348 Sum_probs=75.1
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+..+|+++|+++|+.||.|..+ .+..+..+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~---------------------------------------~~~~~~~~ 63 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGP---------------------------------------PIQFRMMT 63 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSS---------------------------------------CCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccce---------------------------------------EEEEEcCC
Confidence 346899999999999999999999999999654 22233336
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCcC
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~~ 244 (305)
+.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+..+..+.
T Consensus 64 g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~ 109 (115)
T 2cpx_A 64 GRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQRS 109 (115)
T ss_dssp SSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSCCC
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCCCC
Confidence 8899999999999999999999999999999999999998776543
No 261
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=6e-16 Score=113.20 Aligned_cols=72 Identities=24% Similarity=0.574 Sum_probs=67.1
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccC----C-------CeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCce
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQS----G-------PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIK 100 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~ 100 (305)
...++|||+|||.++|+++|+++|+.| | .|.++++..+ +|||||+|.+.++|.+|+ .||+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 9999999754 599999999999999999 899999
Q ss_pred eCCeeeEEee
Q psy3016 101 LYGKPIRVNK 110 (305)
Q Consensus 101 ~~g~~l~v~~ 110 (305)
+.|+.|+|++
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999975
No 262
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=115.59 Aligned_cols=85 Identities=24% Similarity=0.416 Sum_probs=76.7
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
....++|||+||+..+++++|+++|+.||.|..+ .++.|..
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~ 52 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMV---------------------------------------QVKKDLK 52 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEE---------------------------------------EEEECSS
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEE---------------------------------------EEEecCC
Confidence 3456889999999999999999999999999877 6788888
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
++.++|||||+|.+.++|.+|+. ++..++|+.|+|.|+..+...
T Consensus 53 ~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 53 TGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSKQSQ 96 (103)
T ss_dssp SCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTTCCC
T ss_pred CCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCCCcC
Confidence 89999999999999999999999 578999999999999876543
No 263
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.63 E-value=7e-16 Score=125.67 Aligned_cols=85 Identities=22% Similarity=0.354 Sum_probs=78.7
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+..+|+++|.++|+.||.|..+ .++.+..+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~~ 77 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKI---------------------------------------IMGLDKMK 77 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEE---------------------------------------EEEECTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEecCCC
Confidence 356899999999999999999999999999877 67888888
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
+.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+.....
T Consensus 78 ~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 78 KTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKE 121 (156)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCT
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999999999999999999999976544
No 264
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.63 E-value=5.5e-16 Score=118.78 Aligned_cols=84 Identities=27% Similarity=0.487 Sum_probs=75.0
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+.++|+++|+++|+.||.|..+ .++.|..+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v---------------------------------------~i~~~~~t 63 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKEC---------------------------------------LVMRDPLT 63 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEE---------------------------------------EECCCTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEE---------------------------------------EEEECCCC
Confidence 346899999999999999999999999999887 67888888
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
|.++|||||+|.+.++|.+|+..+ +..++|+.|+|.++..+..
T Consensus 64 g~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 64 KRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPRRA 106 (109)
T ss_dssp CCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCCCC
T ss_pred CCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCCCC
Confidence 999999999999999999999976 5999999999999976643
No 265
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.63 E-value=5.4e-16 Score=114.76 Aligned_cols=83 Identities=28% Similarity=0.427 Sum_probs=74.5
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+|||..+++++|+++|+.||.|..+ .++.+ +
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~---------------------------------------~i~~~--~ 44 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYA---------------------------------------DIKME--N 44 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEE---------------------------------------EEEES--S
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEEcc--C
Confidence 346789999999999999999999999999876 44543 6
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
+.++|||||+|.+.++|.+|+..||+..+.|+.|+|.|++....
T Consensus 45 g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 45 GKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASG 88 (92)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 88999999999999999999999999999999999999976643
No 266
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.63 E-value=9.1e-16 Score=120.14 Aligned_cols=83 Identities=22% Similarity=0.382 Sum_probs=76.4
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+..+++++|+++|+.||.|..+ .++.+. +
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v---------------------------------------~i~~~~-~ 72 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKA---------------------------------------AVDYDR-S 72 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEE---------------------------------------EEECCS-S
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE---------------------------------------EEEECC-C
Confidence 456899999999999999999999999999877 677886 7
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+....
T Consensus 73 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 115 (124)
T 2kt5_A 73 GRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 115 (124)
T ss_dssp SSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTT
T ss_pred CCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 9999999999999999999999999999999999999996553
No 267
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3e-16 Score=119.03 Aligned_cols=79 Identities=14% Similarity=0.240 Sum_probs=73.6
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+|||.++|+++|.++|+.||.|..+ .++.|.. +
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v---------------------------------------~i~~d~~-g 49 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNI---------------------------------------QMRRTLH-K 49 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEE---------------------------------------EEECCCT-T
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEE---------------------------------------EEEECCC-C
Confidence 35789999999999999999999999999877 6788877 9
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeee
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 239 (305)
.++|||||+|.+.++|.+|+. +++..+.|+.|.|.++..
T Consensus 50 ~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 50 AFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp SCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 999999999999999999999 999999999999999765
No 268
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-16 Score=119.57 Aligned_cols=82 Identities=23% Similarity=0.427 Sum_probs=73.3
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC-C
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP-D 197 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~-~ 197 (305)
...++|||+||+.++++++|+++|+.|| |..+ .++.+. .
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v---------------------------------------~i~~~~~~ 56 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAV---------------------------------------RLPREPSN 56 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEE---------------------------------------ECSCCTTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEE---------------------------------------EEEecCCc
Confidence 3468999999999999999999999999 8876 677777 5
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
+|+++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++..+.
T Consensus 57 ~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 57 PERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp TCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCSC
T ss_pred CCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCCC
Confidence 8999999999999999999999 899999999999999997653
No 269
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.8e-16 Score=112.25 Aligned_cols=76 Identities=28% Similarity=0.475 Sum_probs=71.4
Q ss_pred ccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCc
Q psy3016 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201 (305)
Q Consensus 122 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~ 201 (305)
++|||+|||.++++++|+++|+.||.|..+ .++.+..++.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v---------------------------------------~i~~~~~~~~~ 41 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKEC---------------------------------------LVMRDPLTKRS 41 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCE---------------------------------------EEECCCCSSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEecCCCCCCc
Confidence 479999999999999999999999999876 67888888999
Q ss_pred cceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEe
Q psy3016 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237 (305)
Q Consensus 202 ~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a 237 (305)
+|||||+|.+.++|.+|+..++ ..+.|+.|+|.++
T Consensus 42 ~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 42 RGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp SSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 9999999999999999999999 9999999999987
No 270
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.62 E-value=4.4e-16 Score=121.87 Aligned_cols=83 Identities=28% Similarity=0.402 Sum_probs=76.2
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+||+..+|+++|+++|+.||.|..+ .++.|..++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~~~ 75 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRI---------------------------------------TILCDKFSG 75 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEE---------------------------------------EEEEECTTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEEecCCCC
Confidence 35789999999999999999999999999877 678887889
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.|++....
T Consensus 76 ~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 117 (124)
T 2jwn_A 76 HPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTNMP 117 (124)
T ss_dssp SCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCCCS
T ss_pred CcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCCCC
Confidence 99999999999999999999 7999999999999999876543
No 271
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=112.73 Aligned_cols=80 Identities=18% Similarity=0.304 Sum_probs=73.5
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+|||.++++++|+++|+.| .|..+ .++.+ .+|
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v---------------------------------------~i~~~-~~g 47 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAI---------------------------------------RIVRN-AHG 47 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEE---------------------------------------EEEEC-TTS
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEE---------------------------------------EEEEC-CCC
Confidence 46789999999999999999999999 88766 67888 779
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
.++|||||+|.+.++|.+|+. ||+..+.|+.|.|.++..+.
T Consensus 48 ~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 48 NKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp CEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCC
T ss_pred CCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCC
Confidence 999999999999999999999 99999999999999997663
No 272
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.7e-16 Score=117.64 Aligned_cols=82 Identities=26% Similarity=0.435 Sum_probs=73.6
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
....++|||+||+.++++++|+++|+.||.|..+ .++.|.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v---------------------------------------~i~~~~- 65 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDV---------------------------------------EIIFNE- 65 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCE---------------------------------------EECCBT-
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEE---------------------------------------EEEECC-
Confidence 3456899999999999999999999999999876 556663
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
+.++|||||+|.+.++|.+|+..|||..++|+.|+|.++..+
T Consensus 66 -~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 66 -RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp -TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred -CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 458999999999999999999999999999999999998765
No 273
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=1.4e-16 Score=127.37 Aligned_cols=123 Identities=17% Similarity=0.192 Sum_probs=72.9
Q ss_pred eEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCC-ccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhh
Q psy3016 77 GYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS-HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155 (305)
Q Consensus 77 g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~-~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~ 155 (305)
++||.+|...+.+..++.++... ..|....-..... ........++|||+|||.++|+++|+++|+.|| +..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v---- 75 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRV---- 75 (139)
T ss_dssp --------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEE----
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEE----
Confidence 67888888888887777754332 2332221111111 112233467899999999999999999999999 5555
Q ss_pred hhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEE
Q psy3016 156 NMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235 (305)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 235 (305)
.++.|.. ++++|||||+|++.++|.+|| .+|+..+.|+.|+|.
T Consensus 76 -----------------------------------~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 76 -----------------------------------HIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp -----------------------------------ECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred -----------------------------------EEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 6788865 999999999999999999999 789999999999999
Q ss_pred EeeecCC
Q psy3016 236 YAFKKDS 242 (305)
Q Consensus 236 ~a~~~~~ 242 (305)
.+.....
T Consensus 119 ~a~~~~~ 125 (139)
T 2hgn_A 119 LNSTTGA 125 (139)
T ss_dssp ECCCSCC
T ss_pred ECCCCCC
Confidence 9876654
No 274
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=6e-16 Score=116.97 Aligned_cols=80 Identities=21% Similarity=0.292 Sum_probs=69.5
Q ss_pred cccccccccccCCCc-hhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccC
Q psy3016 117 NLDVGANIFIGNLDP-EVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRD 195 (305)
Q Consensus 117 ~~~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d 195 (305)
..+..++|||+|||. .+|+++|+++|++||.|..+ .++.+
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v---------------------------------------~i~~~ 51 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNH---------------------------------------LILNK 51 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEE---------------------------------------EECSS
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEE---------------------------------------EEEcC
Confidence 344678999999999 99999999999999999987 34443
Q ss_pred CCCCCccceEEEEeCChHHHHHHHHHhcCe--eecCeeeEEEEeeecC
Q psy3016 196 PDTGNSKGFAFINYASFEASDASIDAMHGQ--YLCNRPISVSYAFKKD 241 (305)
Q Consensus 196 ~~~~~~~g~afV~f~~~~~A~~Al~~l~~~--~~~g~~l~v~~a~~~~ 241 (305)
+|||||+|++.++|.+|+..||+. .+.|++|+|.|++...
T Consensus 52 ------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 52 ------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 93 (102)
T ss_dssp ------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCT
T ss_pred ------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCC
Confidence 589999999999999999999864 5999999999997543
No 275
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.62 E-value=1e-15 Score=122.12 Aligned_cols=80 Identities=35% Similarity=0.556 Sum_probs=74.5
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+|||..+++++|+++|+.||.|..+ .++.|..+
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v---------------------------------------~i~~~~~~ 101 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDI---------------------------------------QIPLDYET 101 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEE---------------------------------------ECCCCTTT
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEeecCCC
Confidence 356899999999999999999999999999877 67888888
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEe
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a 237 (305)
+.++|||||+|.+.++|.+|++.|||..+.|+.|+|.||
T Consensus 102 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 102 EKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp CCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 999999999999999999999999999999999999985
No 276
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.62 E-value=1e-16 Score=118.23 Aligned_cols=80 Identities=26% Similarity=0.456 Sum_probs=72.3
Q ss_pred ccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCc
Q psy3016 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201 (305)
Q Consensus 122 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~ 201 (305)
++|||+||+.++++++|+++|+.||.|..+ .++.|..++.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~~~~~ 42 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNV---------------------------------------KLIYDRETKKP 42 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEE---------------------------------------EECCCSSSCCC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEEEcCCCCCc
Confidence 479999999999999999999999999877 67888888999
Q ss_pred cceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 202 ~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
+|||||+|.+.+ |.+|+..|||..++|+.|+|.++....
T Consensus 43 ~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 43 KGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp CEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred ceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 999999999999 999999999999999999999987654
No 277
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.9e-17 Score=117.03 Aligned_cols=80 Identities=20% Similarity=0.352 Sum_probs=74.1
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+|||..+++++|+++|+.||.|..+ .++.+..++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~---------------------------------------~i~~~~~~~ 44 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVST---------------------------------------KAILDKTTN 44 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEE---------------------------------------EEECCSSSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEecCCCC
Confidence 45789999999999999999999999999877 678888889
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEee
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 238 (305)
.++|||||+|.+.++|.+|+..|||..+.|+.|+++++.
T Consensus 45 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 45 KCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp SCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 999999999999999999999999999999999888753
No 278
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=111.52 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=66.0
Q ss_pred CceEEEcCCCccccHHH----HHHHhccC-CCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEE
Q psy3016 34 DATIYVGGLDDKVSETL----MWELFVQS-GPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV 108 (305)
Q Consensus 34 ~~~l~V~nLp~~~te~~----L~~~F~~~-G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v 108 (305)
.+.|||+|||.++++++ |+++|+.| |+|.+| ++ |+|||.|.+.++|++|++.|+|..+.||.|+|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 34499999999999988 55899999 599998 23 99999999999999999999999999999999
Q ss_pred eeCCCcccc
Q psy3016 109 NKASSHQKN 117 (305)
Q Consensus 109 ~~~~~~~~~ 117 (305)
.++....+.
T Consensus 79 ~~A~~~sd~ 87 (96)
T 2diu_A 79 SFTPKNREL 87 (96)
T ss_dssp ESSCCSCCC
T ss_pred EecCCCcce
Confidence 999876643
No 279
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=115.07 Aligned_cols=82 Identities=24% Similarity=0.274 Sum_probs=70.9
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
....++|||+||+..+++++|+++|+.||.|..+ .++.+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v---------------------------------------~i~~~-- 50 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNI---------------------------------------LMLKG-- 50 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEE---------------------------------------EEETT--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEECC--
Confidence 3456899999999999999999999999999876 33433
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhc--CeeecCeeeEEEEeeecCCcC
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMH--GQYLCNRPISVSYAFKKDSKG 244 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~--~~~~~g~~l~v~~a~~~~~~~ 244 (305)
+|||||+|++.++|.+|+..|+ +..+.|++|+|.|+..+..+.
T Consensus 51 ----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 51 ----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKT 95 (101)
T ss_dssp ----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCCC
T ss_pred ----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccCcC
Confidence 8999999999999999999874 678999999999998776554
No 280
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.6e-16 Score=113.49 Aligned_cols=79 Identities=22% Similarity=0.474 Sum_probs=67.7
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeC
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~ 111 (305)
...++|||+|||..+|+++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|++|+. ....+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 45789999999999999999999999999999999765 67999999999999986533 235668999999998
Q ss_pred CCcccc
Q psy3016 112 SSHQKN 117 (305)
Q Consensus 112 ~~~~~~ 117 (305)
.++...
T Consensus 76 ~~~~~~ 81 (88)
T 1wf0_A 76 EPKHNS 81 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 281
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.3e-16 Score=118.69 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=74.5
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcc-cchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVI-LQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
...++|||+|||.++|+++|+++|+.||.| ..+ .++.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v---------------------------------------~i~~d~- 52 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAV---------------------------------------HVLVDN- 52 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTE---------------------------------------EECCCT-
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeE---------------------------------------EEEECC-
Confidence 346889999999999999999999999999 655 678887
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
+++++|||||+|.+.++|.+|+.. |+..|.|+.|.|.++..+.
T Consensus 53 ~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 53 NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHH
T ss_pred CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHHH
Confidence 899999999999999999999997 9999999999999997654
No 282
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.61 E-value=3e-15 Score=123.58 Aligned_cols=96 Identities=18% Similarity=0.239 Sum_probs=80.6
Q ss_pred CCccceeecCccccccCcccccCCCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEE
Q psy3016 3 LGREIQAGISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIE 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~ 82 (305)
.|+.|.+..+.+... ......++|||+|||..+|+++|+++|+.||.|..+ ..++.++|||||+
T Consensus 79 ~g~~l~v~~~~~~~~-----------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~ 142 (175)
T 1fje_B 79 FGNEIKLEKPKGRDS-----------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIE 142 (175)
T ss_dssp TTEEEEEECCCCSSC-----------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEE
T ss_pred CCeEEEEecCCCccc-----------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEE
Confidence 366666666554321 223456899999999999999999999999988776 3467899999999
Q ss_pred EcCHHHHHHHHHHhcCceeCCeeeEEeeCCCc
Q psy3016 83 FMGEEDADYAIKIMNMIKLYGKPIRVNKASSH 114 (305)
Q Consensus 83 f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~~ 114 (305)
|.+.++|.+|++.|||..+.|+.|+|.++.++
T Consensus 143 f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 143 FKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp CSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99999999999999999999999999998764
No 283
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9e-16 Score=117.27 Aligned_cols=84 Identities=19% Similarity=0.323 Sum_probs=75.0
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCc-ccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcc-cCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGV-ILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIM-RDPD 197 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~-~d~~ 197 (305)
..++|||+||+..+|+++|+++|..||. |..+ .++ .|..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v---------------------------------------~i~~~~~~ 47 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDV---------------------------------------IVYASAAD 47 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEE---------------------------------------ECCSSSCT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEE---------------------------------------EEEccCCC
Confidence 3578999999999999999999999998 8876 455 7777
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhc--CeeecCeeeEEEEeeecCC
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMH--GQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~--~~~~~g~~l~v~~a~~~~~ 242 (305)
++.++|||||+|.+.++|.+|+..|| +..+.|+.|+|.|+..+..
T Consensus 48 ~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 48 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 94 (109)
T ss_dssp TTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCS
T ss_pred CCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCC
Confidence 88999999999999999999999996 5899999999999976643
No 284
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.61 E-value=1e-15 Score=114.88 Aligned_cols=78 Identities=18% Similarity=0.258 Sum_probs=68.6
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
.++++|||+|||.++|+++|+++|++||.|..+ .+++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v---------------------------------------~i~~---- 55 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYV---------------------------------------VVMP---- 55 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEE---------------------------------------EEET----
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEE---------------------------------------EEEc----
Confidence 457899999999999999999999999999876 3332
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCee--ecCeeeEEEEeeecC
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQY--LCNRPISVSYAFKKD 241 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~--~~g~~l~v~~a~~~~ 241 (305)
.+|||||+|++.++|.+|+..|++.. +.|++|+|+|++.+.
T Consensus 56 --~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 56 --KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp --TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred --CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 47999999999999999999999875 789999999997653
No 285
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.61 E-value=6.2e-16 Score=123.13 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=74.0
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCc---ccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGV---ILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRD 195 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d 195 (305)
...++|||+|||+++|+++|+++|+.||. |..+ .+++|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v---------------------------------------~i~~d 82 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGV---------------------------------------HFIYT 82 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTE---------------------------------------EEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEE---------------------------------------EEEEC
Confidence 34678999999999999999999999999 6555 67888
Q ss_pred CCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 196 PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 196 ~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
.. |+++|||||+|++.++|.+|+. +|+..++|+.|+|.++..++
T Consensus 83 ~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~e 126 (136)
T 2hgl_A 83 RE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRTE 126 (136)
T ss_dssp SS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHHH
T ss_pred CC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChHH
Confidence 76 9999999999999999999999 99999999999999986543
No 286
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.6e-15 Score=115.06 Aligned_cols=84 Identities=18% Similarity=0.271 Sum_probs=74.8
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccc-hhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ-TPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
....+|||+|||.++|+++|+++|+.||.|.. + .++.| .
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v---------------------------------------~i~~~-~ 52 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGM---------------------------------------TLPVD-F 52 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEE---------------------------------------ECCBC-S
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeE---------------------------------------EEEEC-C
Confidence 45689999999999999999999999999875 4 45777 7
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
+++++|||||+|.+.++|.+|+.. |+..++|+.|.|.++..+...
T Consensus 53 ~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~~~ 97 (104)
T 1wg5_A 53 QGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAEVR 97 (104)
T ss_dssp SSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTTSC
T ss_pred CCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHHHH
Confidence 799999999999999999999997 999999999999998766543
No 287
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=4.2e-16 Score=117.49 Aligned_cols=82 Identities=22% Similarity=0.351 Sum_probs=74.0
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+||+.++|+++|+++|+.||.|.. .++.+..++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~----------------------------------------~~~~~~~~g 55 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND----------------------------------------LAVVDVRTG 55 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT----------------------------------------CCCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce----------------------------------------EEEecCCCC
Confidence 4679999999999999999999999999875 246676778
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
.++|||||+|.+.++|.+|+. |||..+.|+.|+|.++..+..
T Consensus 56 ~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 56 TNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDG 97 (101)
T ss_dssp TTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCCC
T ss_pred CcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCCC
Confidence 999999999999999999999 999999999999999976643
No 288
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.60 E-value=7.8e-16 Score=109.44 Aligned_cols=75 Identities=24% Similarity=0.452 Sum_probs=70.0
Q ss_pred cccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCcc
Q psy3016 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSK 202 (305)
Q Consensus 123 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~ 202 (305)
+|||+|||.++++++|+++|+.||.|..+ .++.+..++.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~~~~~~~ 41 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESI---------------------------------------ELPMDNKTNKRR 41 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEE---------------------------------------CCCCSCCCSSSC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEecCCCCCcC
Confidence 58999999999999999999999999877 678888889999
Q ss_pred ceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEe
Q psy3016 203 GFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237 (305)
Q Consensus 203 g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a 237 (305)
|||||+|.+.++|.+|+.. ++..+.|+.|+|.+|
T Consensus 42 g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 42 GFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 9999999999999999994 899999999999875
No 289
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=115.18 Aligned_cols=80 Identities=21% Similarity=0.317 Sum_probs=72.0
Q ss_pred ccccccccCCCchh------cHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcc
Q psy3016 120 VGANIFIGNLDPEV------DEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIM 193 (305)
Q Consensus 120 ~~~~l~v~nl~~~~------t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 193 (305)
..++|||+|||..+ |+++|+++|+.||.|..+ .++
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v---------------------------------------~i~ 54 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITND---------------------------------------FYP 54 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEE---------------------------------------ECC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEE---------------------------------------Eee
Confidence 36789999999999 889999999999999876 344
Q ss_pred cCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCe-eeEEEEeeec
Q psy3016 194 RDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNR-PISVSYAFKK 240 (305)
Q Consensus 194 ~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~-~l~v~~a~~~ 240 (305)
..+|.++|||||+|.+.++|.+|+..|||..+.|+ .|+|.++...
T Consensus 55 --~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 55 --EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp --CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred --CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 36789999999999999999999999999999999 9999998654
No 290
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.60 E-value=8.1e-15 Score=111.47 Aligned_cols=83 Identities=14% Similarity=-0.019 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCc-----cccHHHHHHHhccCCCeEEEEEcccCC-CCCcceEEEEEEcCHHHHHHHHHHhcCceeCCe
Q psy3016 31 GDGDATIYVGGLDD-----KVSETLMWELFVQSGPVVNVHMPKDRV-TQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGK 104 (305)
Q Consensus 31 ~~~~~~l~V~nLp~-----~~te~~L~~~F~~~G~i~~i~~~~~~~-~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~ 104 (305)
...+++|+|.||-. .-++++|++.|++||.|.+|.|+.++. +++++|||||+|.+.++|.+|++.|||..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34578999999963 237899999999999999999998864 368899999999999999999999999999999
Q ss_pred eeEEeeCCC
Q psy3016 105 PIRVNKASS 113 (305)
Q Consensus 105 ~l~v~~~~~ 113 (305)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 291
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2e-15 Score=117.10 Aligned_cols=81 Identities=22% Similarity=0.280 Sum_probs=71.0
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+|||+++|+++|+++|++||.|..+ .++.+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v---------------------------------------~i~~~--- 66 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNL---------------------------------------LMLKG--- 66 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEE---------------------------------------EEEGG---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEeCC---
Confidence 356889999999999999999999999999876 44443
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcC--eeecCeeeEEEEeeecCCcC
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHG--QYLCNRPISVSYAFKKDSKG 244 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~--~~~~g~~l~v~~a~~~~~~~ 244 (305)
+|||||+|++.++|.+|+..|++ ..+.|++|+|.|++.+..+.
T Consensus 67 ---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 67 ---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT 111 (119)
T ss_dssp ---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCCC
T ss_pred ---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCCc
Confidence 79999999999999999999884 68999999999998776543
No 292
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=2.6e-15 Score=117.19 Aligned_cols=78 Identities=23% Similarity=0.359 Sum_probs=70.9
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~ 109 (305)
.....++|||+|| .+|+++|+++|+.||.|.+|.+. .++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999996 69999999999999999999995 367999999999999999999999999999999999
Q ss_pred eCCCcc
Q psy3016 110 KASSHQ 115 (305)
Q Consensus 110 ~~~~~~ 115 (305)
++....
T Consensus 107 ~a~~~~ 112 (121)
T 2bz2_A 107 IARKQP 112 (121)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 998764
No 293
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=9.9e-16 Score=120.02 Aligned_cols=82 Identities=23% Similarity=0.350 Sum_probs=74.5
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
...+|||+|||.++|+++|+++|+.||.|..+ .++.+..+|
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~---------------------------------------~~~~~~~~g 64 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDS---------------------------------------IYIAYGPNG 64 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTT---------------------------------------CEEEECTTS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccce---------------------------------------EEEEECCCC
Confidence 45799999999999999999999999999765 456666789
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
+++|||||+|.+.++|.+||. ||+..|+|+.|.|.++..+.
T Consensus 65 ~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~ 105 (124)
T 1wel_A 65 KATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKKG 105 (124)
T ss_dssp SEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHHH
T ss_pred CCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHHH
Confidence 999999999999999999999 99999999999999997654
No 294
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.7e-15 Score=116.68 Aligned_cols=82 Identities=28% Similarity=0.541 Sum_probs=74.7
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+|||..+++++|+++|+.||.|..+ .++.|. +
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~---------------------------------------~i~~~~-~ 62 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVIST---------------------------------------RILRDS-S 62 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEE---------------------------------------EEEECS-S
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEEECC-C
Confidence 346789999999999999999999999999877 678886 7
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeee--------cCeeeEEEEeeec
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYL--------CNRPISVSYAFKK 240 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~--------~g~~l~v~~a~~~ 240 (305)
+.++|||||+|.+.++|.+|+..|||..+ .+++|.|.|+.++
T Consensus 63 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 63 GTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp SCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence 99999999999999999999999999999 6888999998754
No 295
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.1e-15 Score=114.30 Aligned_cols=78 Identities=14% Similarity=0.205 Sum_probs=70.3
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+|||.++|+++|+++|+.||.|..+ .++.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~---------------------------------------~i~~~---- 50 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYA---------------------------------------DVYRD---- 50 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEE---------------------------------------EEETT----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEE---------------------------------------EEecC----
Confidence 46889999999999999999999999999876 44444
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecC-----eeeEEEEeeecCCc
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCN-----RPISVSYAFKKDSK 243 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g-----~~l~v~~a~~~~~~ 243 (305)
|||||+|.+.++|.+||+.||+..|.| +.|+|.++..+...
T Consensus 51 ---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 51 ---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPS 96 (108)
T ss_dssp ---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSCC
T ss_pred ---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCCC
Confidence 899999999999999999999999999 99999999876543
No 296
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=9.7e-17 Score=124.26 Aligned_cols=93 Identities=27% Similarity=0.411 Sum_probs=78.1
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+||+..+++++|+++|+.||.|..+.. .......++.|..++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~-------------------------------~~~~~v~i~~~~~~g 54 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKK-------------------------------TGQPMINLYTDRETG 54 (116)
Confidence 4678999999999999999999999999976200 000001678888889
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++..+...
T Consensus 55 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 55 KLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 98 (116)
Confidence 99999999999999999999999999999999999999776543
No 297
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=2.6e-15 Score=115.04 Aligned_cols=94 Identities=21% Similarity=0.451 Sum_probs=77.7
Q ss_pred CCeeeEEeeCCCccc--cccccccccccCCCch-hcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCC
Q psy3016 102 YGKPIRVNKASSHQK--NLDVGANIFIGNLDPE-VDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLD 178 (305)
Q Consensus 102 ~g~~l~v~~~~~~~~--~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (305)
.|..+.+..+..... .....++|||+||+.. +++++|+++|+.||.|..+
T Consensus 6 ~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v--------------------------- 58 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGC--------------------------- 58 (110)
T ss_dssp CSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEE---------------------------
T ss_pred CCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEE---------------------------
Confidence 456666666543322 2234579999999999 9999999999999999876
Q ss_pred CcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 179 VGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 179 ~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
.+ ++|||||+|.+.++|.+|+..||+..++|+.|+|.|+.....
T Consensus 59 ------------~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 59 ------------SV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp ------------EE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred ------------EE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 22 589999999999999999999999999999999999975543
No 298
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.58 E-value=4.7e-15 Score=121.97 Aligned_cols=80 Identities=21% Similarity=0.352 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeC---CeeeEE
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLY---GKPIRV 108 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~---g~~l~v 108 (305)
...++|||+|||..+|+++|+++|+.||.|.++.++.+. +|.++|||||+|.+.++|.+|++.|||..+. |+.|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 356799999999999999999999999999999999986 5889999999999999999999999998776 499999
Q ss_pred eeCC
Q psy3016 109 NKAS 112 (305)
Q Consensus 109 ~~~~ 112 (305)
.++.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9873
No 299
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.58 E-value=2.1e-15 Score=117.25 Aligned_cols=80 Identities=14% Similarity=0.170 Sum_probs=72.6
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCc---ccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGV---ILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~ 196 (305)
..++|||+||+.++|+++|+++|+.||. |..+ .++.|.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v---------------------------------------~i~~~~ 56 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGV---------------------------------------HFIYTR 56 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGE---------------------------------------EEEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeE---------------------------------------EEEECC
Confidence 4678999999999999999999999999 5555 677786
Q ss_pred CCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 197 ~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
. |+++|||||+|.+.++|.+|+. +|+..++|+.|+|.++..+
T Consensus 57 ~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 57 E-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp S-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHH
T ss_pred C-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHH
Confidence 6 9999999999999999999999 9999999999999998654
No 300
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=3.6e-15 Score=109.94 Aligned_cols=78 Identities=26% Similarity=0.434 Sum_probs=69.9
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+.++++++|+++|+.||.|..+ .++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~~~----- 41 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLEC---------------------------------------DII----- 41 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEE---------------------------------------EEE-----
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEE---------------------------------------EEE-----
Confidence 346889999999999999999999999999876 222
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
+|||||+|.+.++|.+|+..||+..+.|+.|+|.|+..+...
T Consensus 42 ---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 42 ---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp ---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred ---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 689999999999999999999999999999999999776543
No 301
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.1e-15 Score=111.88 Aligned_cols=78 Identities=27% Similarity=0.497 Sum_probs=69.3
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+.++|+++|+++|+.||.|..+ .++.+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v---------------------------------------~~~~~--- 52 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTI---------------------------------------DHVKG--- 52 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEE---------------------------------------EECSS---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE---------------------------------------EEeCC---
Confidence 346889999999999999999999999999876 23322
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeec--CeeeEEEEeeecC
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLC--NRPISVSYAFKKD 241 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~--g~~l~v~~a~~~~ 241 (305)
+|||||+|.+.++|.+|++.||+..+. |+.|+|.|++.+.
T Consensus 53 ---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 53 ---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp ---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred ---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 789999999999999999999999999 9999999997764
No 302
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3e-15 Score=113.68 Aligned_cols=80 Identities=18% Similarity=0.293 Sum_probs=69.0
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
....++|||+||+..+++++|+++|++||.|..+ .++.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v---------------------------------------~i~~--- 49 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYV---------------------------------------MMMP--- 49 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEE---------------------------------------EEET---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEE---------------------------------------EEEC---
Confidence 3456899999999999999999999999999876 3333
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCe--eecCeeeEEEEeeecCC
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQ--YLCNRPISVSYAFKKDS 242 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~--~~~g~~l~v~~a~~~~~ 242 (305)
.+|||||+|++.++|.+|+..|++. .+.|++|+|.|+..+..
T Consensus 50 ---~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 50 ---FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp ---TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred ---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 2799999999999999999998764 58999999999976654
No 303
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=113.84 Aligned_cols=76 Identities=21% Similarity=0.485 Sum_probs=69.3
Q ss_pred ccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCc
Q psy3016 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201 (305)
Q Consensus 122 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~ 201 (305)
++|||+|||.++|+++|+++|+.||.|..+ .++.+ +
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~-----~ 36 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTV---------------------------------------WIARN-----P 36 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEE---------------------------------------EEESS-----S
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEeeC-----C
Confidence 479999999999999999999999999876 44544 6
Q ss_pred cceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 202 ~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
+|||||+|.+.++|.+|+..|||..+.|+.|+|.|+..+.
T Consensus 37 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 37 PGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 8999999999999999999999999999999999997765
No 304
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.4e-15 Score=111.00 Aligned_cols=77 Identities=21% Similarity=0.404 Sum_probs=68.8
Q ss_pred cccccccccCCCchhcHHHHHHHHhhc--CcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAF--GVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~--g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~ 196 (305)
...++|||+||+..+|+++|+++|+.| |.|..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~--------------------------------------------- 47 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------------------------------------------- 47 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEE---------------------------------------------
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEE---------------------------------------------
Confidence 456899999999999999999999999 888765
Q ss_pred CCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 197 ~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
...+|||||+|.+.++|.+|+..|||..+.|+.|+|.|++.+..
T Consensus 48 --~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 48 --KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp --EECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred --EEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 12377999999999999999999999999999999999987654
No 305
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.7e-15 Score=114.65 Aligned_cols=82 Identities=18% Similarity=0.282 Sum_probs=72.7
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
....+|||+|||.++|+++|+++|+.||.+ .+ .++.|. +
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v---------------------------------------~i~~d~-~ 51 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RV---------------------------------------HIEIGP-D 51 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EE---------------------------------------EEEESS-S
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EE---------------------------------------EEEECC-C
Confidence 346789999999999999999999999954 55 678886 7
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
++++|||||+|.+.++|.+||. +|+..+.++.|+|.++.....
T Consensus 52 g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~~~~ 94 (102)
T 1wez_A 52 GRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTAGT 94 (102)
T ss_dssp SCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECCCCC
T ss_pred CCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCCCCC
Confidence 9999999999999999999995 799999999999999876553
No 306
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.5e-15 Score=111.43 Aligned_cols=81 Identities=22% Similarity=0.424 Sum_probs=71.3
Q ss_pred cccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC
Q psy3016 117 NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196 (305)
Q Consensus 117 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~ 196 (305)
.....++|||+|||..+|+++|+++|+.||.|..+ .++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~~~~-- 49 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV---------------------------------------FIHK-- 49 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEE---------------------------------------EEET--
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEE---------------------------------------EEec--
Confidence 34456899999999999999999999999999876 3332
Q ss_pred CCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 197 ~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
.+|||||+|.+.++|.+|++.|||..+.|+.|+|.|+..+..
T Consensus 50 ----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 50 ----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp ----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred ----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 379999999999999999999999999999999999977643
No 307
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.9e-15 Score=113.86 Aligned_cols=78 Identities=18% Similarity=0.509 Sum_probs=70.7
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+||+..+++++|+++|+.||.|..+ .++.+
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~---- 60 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEI---------------------------------------RVFPE---- 60 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEE---------------------------------------EEETT----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEeCC----
Confidence 46789999999999999999999999999876 44444
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
+|||||+|.+.++|.+|+..|||..+.|+.|+|.|++.+..
T Consensus 61 --~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 61 --KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp --TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred --CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 79999999999999999999999999999999999977654
No 308
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=7.8e-16 Score=111.33 Aligned_cols=73 Identities=23% Similarity=0.366 Sum_probs=65.7
Q ss_pred ccccccCCCchh------cHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccC
Q psy3016 122 ANIFIGNLDPEV------DEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRD 195 (305)
Q Consensus 122 ~~l~v~nl~~~~------t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d 195 (305)
++|||+|||..+ ++++|+++|+.||.|..+ .++
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~-- 40 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITND---------------------------------------FYP-- 40 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEE---------------------------------------ECC--
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEE---------------------------------------Eec--
Confidence 689999999999 789999999999999876 333
Q ss_pred CCCCCccceEEEEeCChHHHHHHHHHhcCeeecCe-eeEEE
Q psy3016 196 PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNR-PISVS 235 (305)
Q Consensus 196 ~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~-~l~v~ 235 (305)
..+|+++|||||+|.+.++|.+|+..|||..++|+ +|+|+
T Consensus 41 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 41 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEeC
Confidence 35789999999999999999999999999999999 88763
No 309
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=9.2e-15 Score=108.21 Aligned_cols=77 Identities=17% Similarity=0.416 Sum_probs=69.0
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+..+++++|+++|+.||.|..+ .++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v---------------------------------------~~~----- 43 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIEC---------------------------------------DIV----- 43 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEE---------------------------------------EEC-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEE-----
Confidence 456899999999999999999999999999876 233
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
++||||+|.+.++|.+|+..||+..+.|+.|+|.|+..+..
T Consensus 44 ---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 44 ---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp ---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred ---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 44999999999999999999999999999999999977654
No 310
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.57 E-value=3.6e-15 Score=114.52 Aligned_cols=78 Identities=13% Similarity=0.035 Sum_probs=68.3
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcC-cccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFG-VILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...+|||+|||.++++++|+++|+.|| .|..+ .+..
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v---------------------------------------~i~~---- 63 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFS---------------------------------------SVNT---- 63 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEE---------------------------------------ECSS----
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEE---------------------------------------EEEc----
Confidence 457899999999999999999999999 88765 2221
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
+.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++...
T Consensus 64 ~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 64 RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 347999999999999999999999999999999999998543
No 311
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=2.8e-15 Score=117.99 Aligned_cols=82 Identities=24% Similarity=0.397 Sum_probs=71.3
Q ss_pred cccccccccCCCchhcHHHHH----HHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCccc
Q psy3016 119 DVGANIFIGNLDPEVDEKLLY----DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMR 194 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 194 (305)
...++|||+||+..+++++|+ ++|+.||.|..+ .+.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v---------------------------------------~i~- 66 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDI---------------------------------------VVD- 66 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEE---------------------------------------EEC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEE---------------------------------------Eec-
Confidence 346789999999999998865 799999999765 222
Q ss_pred CCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 195 DPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 195 d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
.+++++|||||+|.+.++|.+|+..|||..+.|+.|+|.|++.+..
T Consensus 67 --~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 67 --LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQS 112 (127)
T ss_dssp --CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCH
T ss_pred --cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcch
Confidence 3578899999999999999999999999999999999999977654
No 312
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=4.9e-15 Score=110.86 Aligned_cols=79 Identities=18% Similarity=0.358 Sum_probs=69.8
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+..+++++|+++|+.||.|. + .++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~---------------------------------------~~~~---- 52 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-L---------------------------------------RLTW---- 52 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-S---------------------------------------EEEE----
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-E---------------------------------------EEEc----
Confidence 3468999999999999999999999999985 3 2232
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
+.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++..+.
T Consensus 53 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 53 QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 4679999999999999999999999999999999999997653
No 313
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.57 E-value=8.6e-15 Score=123.56 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=73.4
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~ 112 (305)
..++|||+|||..+|+++|+++|+.||.|..|++..+. ++.++|||||+|.+.++|.+|++.+ +..+.|+.|.|.+..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 35899999999999999999999999999999999986 5889999999999999999999855 569999999999887
Q ss_pred Ccc
Q psy3016 113 SHQ 115 (305)
Q Consensus 113 ~~~ 115 (305)
...
T Consensus 186 ~y~ 188 (193)
T 2voo_A 186 DYF 188 (193)
T ss_dssp TC-
T ss_pred HHH
Confidence 644
No 314
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.57 E-value=8.1e-15 Score=110.90 Aligned_cols=78 Identities=27% Similarity=0.468 Sum_probs=69.7
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+.++|+++|+++|+.||.|..+ .++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v---------------------------------------~~~----- 44 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERV---------------------------------------KKL----- 44 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEE---------------------------------------EEC-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEE-----
Confidence 346889999999999999999999999999876 222
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
++||||+|.+.++|.+|+..||+..|.|+.|+|.|+..+...
T Consensus 45 ---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 45 ---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp ---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred ---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 569999999999999999999999999999999999876554
No 315
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.7e-15 Score=109.13 Aligned_cols=78 Identities=23% Similarity=0.433 Sum_probs=68.2
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCc-ccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGV-ILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
..++|||+||+.++|+++|+++|+.||. |..+ ++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~----------------------------------------~~----- 41 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQ----------------------------------------VL----- 41 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSC----------------------------------------EE-----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEE----------------------------------------EE-----
Confidence 4578999999999999999999999999 4432 11
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcC-eeecCeeeEEEEeeecCCc
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHG-QYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~-~~~~g~~l~v~~a~~~~~~ 243 (305)
.++|||||+|.+.++|.+|+..||| ..++|+.|+|.|+..+..+
T Consensus 42 -~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 42 -LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLR 86 (93)
T ss_dssp -EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCCC
T ss_pred -cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcccc
Confidence 2589999999999999999999999 9999999999999876543
No 316
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=3.5e-15 Score=111.32 Aligned_cols=81 Identities=22% Similarity=0.363 Sum_probs=71.9
Q ss_pred ccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 118 LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
....++|||+||+..+++++|+++|+.||.|.. + ..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~------------------------------------------~--~~ 48 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRL------------------------------------------V--SQ 48 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECC------------------------------------------E--EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEE------------------------------------------e--CC
Confidence 345689999999999999999999999998853 2 34
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+..+..
T Consensus 49 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 49 DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp TTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 688999999999999999999999999999999999999976543
No 317
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=3.2e-15 Score=112.62 Aligned_cols=76 Identities=25% Similarity=0.371 Sum_probs=68.4
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+||+.++++++|+++|+.||.|..+ .++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~---------------------------------------~~~------ 60 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDF---------------------------------------KHY------ 60 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEE---------------------------------------EEE------
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEE---------------------------------------EEe------
Confidence 35789999999999999999999999999876 233
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|++++
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 45899999999999999999999999999999999998653
No 318
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.56 E-value=2.1e-15 Score=115.05 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=73.4
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCc---ccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGV---ILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRD 195 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d 195 (305)
...++|||+||+.++|+++|+++|+.||. |..+ .++.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v---------------------------------------~i~~~ 49 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGI---------------------------------------HFLLN 49 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTE---------------------------------------ECCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceE---------------------------------------EEEEC
Confidence 45678999999999999999999999998 6655 67888
Q ss_pred CCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 196 PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 196 ~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
.. |+++|||||+|.+.++|.+|+. +|+..++|+.|+|.++..+
T Consensus 50 ~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 50 RD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNE 92 (107)
T ss_dssp TT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHH
T ss_pred CC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHH
Confidence 77 9999999999999999999999 9999999999999998654
No 319
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=9.4e-15 Score=107.70 Aligned_cols=77 Identities=21% Similarity=0.397 Sum_probs=68.9
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+..+|+++|+++|+.||.|..+ .++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~---------------------------------------~~~----- 42 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIEC---------------------------------------DVV----- 42 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEE---------------------------------------EEC-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEE---------------------------------------EEE-----
Confidence 456889999999999999999999999999876 233
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
++||||+|.+.++|.+|+..|||..+.|+.|+|.|+.....
T Consensus 43 ---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 43 ---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp ---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred ---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 44999999999999999999999999999999999977644
No 320
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.56 E-value=4.2e-15 Score=114.64 Aligned_cols=82 Identities=23% Similarity=0.410 Sum_probs=73.2
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+|||..+|+++|+++|+.||.|..+ .++.+ +
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v---------------------------------------~i~~~---~ 44 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQI---------------------------------------RVGNT---P 44 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEE---------------------------------------EEECS---T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEeeC---C
Confidence 46789999999999999999999999999876 44544 5
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
.++|||||+|.+.++|.+|+..|||..+.|+.|.|.|+..+...
T Consensus 45 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 88 (115)
T 3lqv_A 45 ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF 88 (115)
T ss_dssp TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT
T ss_pred CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh
Confidence 56999999999999999999999999999999999999875543
No 321
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.56 E-value=2.5e-15 Score=120.58 Aligned_cols=88 Identities=24% Similarity=0.368 Sum_probs=73.5
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchh--hhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP--KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~ 196 (305)
...++|||+||+..+|+++|+++|+.||.|..+. .+ + . +...
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~---------------------------------~--d-i~~~ 86 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIM---------------------------------F--D-IRLM 86 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHH---------------------------------C--E-EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccce---------------------------------e--e-EEec
Confidence 3467899999999999999999999999998651 11 0 0 1112
Q ss_pred CCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 197 ~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.....
T Consensus 87 ~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 87 KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARP 132 (143)
T ss_dssp EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSCC
T ss_pred cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 4688999999999999999999999999999999999999976543
No 322
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.56 E-value=8e-15 Score=127.10 Aligned_cols=80 Identities=24% Similarity=0.413 Sum_probs=71.4
Q ss_pred cCCCCceEEEcCCCccc---------cHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCce
Q psy3016 30 SGDGDATIYVGGLDDKV---------SETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIK 100 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~---------te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~ 100 (305)
.....++||||||+..+ ++++|+++|++||+|.+|+|+. ++|||||+|.+.++|+.|++.|+|..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 45568899999999998 7999999999999999999986 46999999999999999999999999
Q ss_pred e------------CCeeeEEeeCCCcc
Q psy3016 101 L------------YGKPIRVNKASSHQ 115 (305)
Q Consensus 101 ~------------~g~~l~v~~~~~~~ 115 (305)
+ .|+.|.|+|+....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeccccccccccCCCCEEEEEEccCCC
Confidence 9 89999999998653
No 323
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=4.5e-15 Score=113.89 Aligned_cols=81 Identities=21% Similarity=0.253 Sum_probs=69.4
Q ss_pred ccccccccccCCCch-hcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC
Q psy3016 118 LDVGANIFIGNLDPE-VDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~ 196 (305)
....++|||+||+.+ +++++|+++|++||.|..+ .++
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v---------------------------------------~i~--- 59 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNY---------------------------------------ILM--- 59 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEE---------------------------------------EEE---
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEE---------------------------------------EEe---
Confidence 345789999999998 9999999999999999876 333
Q ss_pred CCCCccceEEEEeCChHHHHHHHHHhcC--eeecCeeeEEEEeeecCCc
Q psy3016 197 DTGNSKGFAFINYASFEASDASIDAMHG--QYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 197 ~~~~~~g~afV~f~~~~~A~~Al~~l~~--~~~~g~~l~v~~a~~~~~~ 243 (305)
+++|||||+|++.++|.+|+..||+ ..+.|++|+|.|+..+...
T Consensus 60 ---~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 60 ---RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKL 105 (112)
T ss_dssp ---TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSS
T ss_pred ---cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccccc
Confidence 2489999999999999999998864 5699999999999766543
No 324
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=6.6e-15 Score=107.18 Aligned_cols=75 Identities=20% Similarity=0.394 Sum_probs=67.5
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+|||..+++++|+++|+.||.|..+ .++.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~---------------------------------------~~~~---- 46 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTI---------------------------------------TVVQ---- 46 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEE---------------------------------------EEEG----
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEE---------------------------------------EEEC----
Confidence 456899999999999999999999999999876 3333
Q ss_pred CCccceEEEEeCChHHHHHHHHHh-cCeeecCeeeEEEEee
Q psy3016 199 GNSKGFAFINYASFEASDASIDAM-HGQYLCNRPISVSYAF 238 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l-~~~~~~g~~l~v~~a~ 238 (305)
++|||||+|.+.++|.+|+..| |+..+.|+.|+|.|++
T Consensus 47 --~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 47 --RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp --GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred --CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3799999999999999999999 9999999999999974
No 325
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.55 E-value=3.5e-15 Score=111.42 Aligned_cols=82 Identities=23% Similarity=0.458 Sum_probs=72.4
Q ss_pred cccccccccCCCchhcHHHHH----HHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCccc
Q psy3016 119 DVGANIFIGNLDPEVDEKLLY----DTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMR 194 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 194 (305)
...++|||+||+.++++++|+ ++|+.||.|..+ .++
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v---------------------------------------~i~- 45 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDI---------------------------------------LVS- 45 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEE---------------------------------------ECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEE---------------------------------------EEE-
Confidence 346789999999999999999 999999999876 233
Q ss_pred CCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 195 DPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 195 d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
.++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+..+..
T Consensus 46 --~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 46 --RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp --HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCT
T ss_pred --cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCc
Confidence 2467899999999999999999999999999999999999977643
No 326
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.55 E-value=7.9e-15 Score=112.12 Aligned_cols=77 Identities=26% Similarity=0.561 Sum_probs=69.1
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+..+|+++|+++|+.||.|..+ .++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v---------------------------------------~i~----- 64 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEV---------------------------------------KIL----- 64 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEE---------------------------------------EEE-----
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEE-----
Confidence 356899999999999999999999999999876 233
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
+|||||+|.+.++|.+|+..|||..+.|+.|+|.|+..+..
T Consensus 65 ---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 65 ---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAK 105 (108)
T ss_dssp ---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC-
T ss_pred ---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCC
Confidence 78999999999999999999999999999999999976543
No 327
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=7.1e-15 Score=112.52 Aligned_cols=78 Identities=14% Similarity=0.207 Sum_probs=70.4
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
..+|||+|||.++|+++|+++|+.| .|..+ .++.|.. |+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v---------------------------------------~i~~d~~-g~ 54 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAV---------------------------------------HLLKDHV-GR 54 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEE---------------------------------------EECCCTT-CC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEE---------------------------------------EEEECCC-CC
Confidence 4789999999999999999999999 77665 6778865 99
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
++|||||+|.+.++|.+|+ .+|+..++||.|.|..+..+
T Consensus 55 ~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 55 NNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp CCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 9999999999999999999 69999999999999888544
No 328
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=9.8e-15 Score=112.14 Aligned_cols=78 Identities=14% Similarity=0.109 Sum_probs=69.5
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+||+..+++++|+++|+.||.|..+ .++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v---------------------------------------~i~------ 43 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRV---------------------------------------LLP------ 43 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEE---------------------------------------ECC------
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEe------
Confidence 35789999999999999999999999999876 222
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
.++|||||+|.+.++|.+|+..|||..+.|+.|.|.|+.....
T Consensus 44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 86 (111)
T 1whx_A 44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVF 86 (111)
T ss_dssp SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 2578999999999999999999999999999999999976544
No 329
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=4.9e-15 Score=110.68 Aligned_cols=78 Identities=22% Similarity=0.413 Sum_probs=69.2
Q ss_pred cccccccccCCCc-hhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 119 DVGANIFIGNLDP-EVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 119 ~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
...++|||+|||. .+++++|+++|+.||.|..+ .+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v---------------------------------------~i----- 43 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQI---------------------------------------NI----- 43 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEE---------------------------------------EE-----
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEE---------------------------------------EE-----
Confidence 4568999999998 99999999999999999876 22
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+..+...
T Consensus 44 ---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 44 ---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNARP 86 (96)
T ss_dssp ---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC-
T ss_pred ---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCCC
Confidence 3789999999999999999999999999999999999776543
No 330
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=111.25 Aligned_cols=81 Identities=16% Similarity=0.273 Sum_probs=69.5
Q ss_pred cccccccc--cCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC
Q psy3016 119 DVGANIFI--GNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196 (305)
Q Consensus 119 ~~~~~l~v--~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~ 196 (305)
...++||| +||+.++++++|+++|++||.|..+ .++.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v---------------------------------------~i~~-- 61 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDAL---------------------------------------LMPP-- 61 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEE---------------------------------------ECCT--
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEeC--
Confidence 34678999 7799999999999999999999875 2222
Q ss_pred CCCCccceEEEEeCChHHHHHHHHHhcCeee-----cCeeeEEEEeeecCCcC
Q psy3016 197 DTGNSKGFAFINYASFEASDASIDAMHGQYL-----CNRPISVSYAFKKDSKG 244 (305)
Q Consensus 197 ~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~-----~g~~l~v~~a~~~~~~~ 244 (305)
.+|||||+|++.++|.+|+..|||+++ .|++|.|.|+....+..
T Consensus 62 ----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~~~ 110 (114)
T 2cq2_A 62 ----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWSG 110 (114)
T ss_dssp ----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCCCSS
T ss_pred ----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCcccC
Confidence 378999999999999999999999998 78999999997665543
No 331
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.53 E-value=1.2e-14 Score=121.03 Aligned_cols=83 Identities=22% Similarity=0.382 Sum_probs=76.2
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+||+..+++++|+++|+.||.|..+ .+..|. +
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v---------------------------------------~i~~d~-~ 125 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKA---------------------------------------AVDYDR-S 125 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEE---------------------------------------EECCCT-T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEECC-C
Confidence 346899999999999999999999999999877 677776 7
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
+.++|||||+|.+.++|.+|+..|||..++|+.|+|.|+....
T Consensus 126 g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 126 GRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp SSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGG
T ss_pred CCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 9999999999999999999999999999999999999996553
No 332
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.53 E-value=1.3e-14 Score=108.72 Aligned_cols=75 Identities=23% Similarity=0.449 Sum_probs=67.9
Q ss_pred cccccccccCCCc-hhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 119 DVGANIFIGNLDP-EVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 119 ~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
...++|||+||+. .+++++|+++|+.||.|..+ .+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v---------------------------------------~i----- 55 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQI---------------------------------------NI----- 55 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEE---------------------------------------EE-----
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEE---------------------------------------EE-----
Confidence 3568999999998 99999999999999999876 22
Q ss_pred CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 198 TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 198 ~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
.+|||||+|.+.++|.+|+..|||..++|+.|+|.|++.+
T Consensus 56 ---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 56 ---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp ---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred ---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 3799999999999999999999999999999999998654
No 333
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.2e-14 Score=107.24 Aligned_cols=80 Identities=21% Similarity=0.413 Sum_probs=69.5
Q ss_pred cccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC
Q psy3016 117 NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196 (305)
Q Consensus 117 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~ 196 (305)
.....++|||+|+ ++|+++|+++|+.||.|..+ .+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v---------------------------------------~i---- 45 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDL---------------------------------------SM---- 45 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEE---------------------------------------EE----
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEE---------------------------------------Ee----
Confidence 3345689999996 89999999999999999876 22
Q ss_pred CCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 197 ~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
+.++|||||+|.+.++|.+|+..||+..+.|+.|+|.|+..+...
T Consensus 46 --~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 46 --DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 90 (97)
T ss_dssp --ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCCC
T ss_pred --cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCCC
Confidence 256899999999999999999999999999999999999776543
No 334
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=107.76 Aligned_cols=78 Identities=23% Similarity=0.326 Sum_probs=68.8
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+||+.++|+++|+++|+.||.|..+ +.+..++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-----------------------------------------~~~~~~g 45 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-----------------------------------------VMDKDKG 45 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-----------------------------------------EECSSSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-----------------------------------------EEcCCCC
Confidence 45789999999999999999999999999854 5665555
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
. ||||+|.+.++|.+|+. |||..+.|+.|+|.++..+..
T Consensus 46 ~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 46 V---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp C---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred c---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 5 99999999999999999 999999999999998865543
No 335
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.53 E-value=7.9e-15 Score=110.64 Aligned_cols=81 Identities=21% Similarity=0.466 Sum_probs=74.1
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+||+..+++++|+++|+.||.|..+ .++.|. ++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v---------------------------------------~i~~~~-~g 47 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEV---------------------------------------KIITDR-TG 47 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEE---------------------------------------EEEECT-TS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEE---------------------------------------EEEECC-CC
Confidence 35789999999999999999999999999877 678887 89
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
.++|||||+|.+.++|.+|+. ++..+.|+.|.|.++..+..
T Consensus 48 ~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~~~ 88 (102)
T 2xs2_A 48 VSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRKQN 88 (102)
T ss_dssp CEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEECC-
T ss_pred CccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcCcc
Confidence 999999999999999999999 99999999999999977643
No 336
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.52 E-value=1.1e-14 Score=118.70 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=68.7
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
...|||+||++.+|+++|+++|++||.|..+ .+.. ..
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V---------------------------------------~i~~----k~ 82 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKI---------------------------------------ITFT----KN 82 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEE---------------------------------------EEEE----SS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEEe----CC
Confidence 4569999999999999999999999999876 2222 23
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecC--eeeEEEEeeecCC
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCN--RPISVSYAFKKDS 242 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g--~~l~v~~a~~~~~ 242 (305)
++|||||+|++.++|.+|++.|||..|.| +.|+|.|++.+..
T Consensus 83 ~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l 126 (164)
T 1sjr_A 83 NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 126 (164)
T ss_dssp SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCcc
Confidence 57899999999999999999999999965 9999999987653
No 337
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.52 E-value=7.1e-14 Score=123.28 Aligned_cols=82 Identities=27% Similarity=0.335 Sum_probs=74.6
Q ss_pred CceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhc-CceeC---CeeeEEe
Q psy3016 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMN-MIKLY---GKPIRVN 109 (305)
Q Consensus 34 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~-g~~~~---g~~l~v~ 109 (305)
.++|||+|||..+|+++|+++|+.||.|..|.++.+ .+|.++|||||+|.+.++|.+|++.|+ +..+. ++.|.|.
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 569999999999999999999999999999999999 488999999999999999999999995 55555 9999999
Q ss_pred eCCCccc
Q psy3016 110 KASSHQK 116 (305)
Q Consensus 110 ~~~~~~~ 116 (305)
++.....
T Consensus 175 ~~~~~~~ 181 (261)
T 3sde_A 175 PMEQFDD 181 (261)
T ss_dssp ECCCEES
T ss_pred eccccCc
Confidence 9887643
No 338
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.2e-14 Score=105.35 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=65.2
Q ss_pred ccc-ccccCCCchhcHHH----HHHHHhhcC-cccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCccc
Q psy3016 121 GAN-IFIGNLDPEVDEKL----LYDTFSAFG-VILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMR 194 (305)
Q Consensus 121 ~~~-l~v~nl~~~~t~~~----l~~~f~~~g-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 194 (305)
..+ |||+||+..+++++ |+++|+.|| .|..+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------------------------------------------- 44 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------------------------------------------- 44 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------------------------------------------
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------------------------------------------
Confidence 444 99999999999988 668999995 99753
Q ss_pred CCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 195 DPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 195 d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
++ |+|||+|.+.++|.+|++.|||..+.||+|+|+||+.+.+-
T Consensus 45 ---tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 45 ---TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNREL 87 (96)
T ss_dssp ---CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCC
T ss_pred ---ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcce
Confidence 23 99999999999999999999999999999999999887654
No 339
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.52 E-value=9.9e-15 Score=113.23 Aligned_cols=77 Identities=17% Similarity=0.298 Sum_probs=69.7
Q ss_pred ccccccCC----CchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCC
Q psy3016 122 ANIFIGNL----DPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPD 197 (305)
Q Consensus 122 ~~l~v~nl----~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~ 197 (305)
..|||+|| ++.+++++|+++|+.||+|..+ .++.|+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~---------------------------------------~li~Dp~ 43 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHF---------------------------------------EAFNDPN 43 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEE---------------------------------------EEEECTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEEecCC
Confidence 47999999 9999999999999999999988 7899999
Q ss_pred CCCccceEEEEeCC----hHH----HHHHHH--HhcCeeecCeeeEEEEe
Q psy3016 198 TGNSKGFAFINYAS----FEA----SDASID--AMHGQYLCNRPISVSYA 237 (305)
Q Consensus 198 ~~~~~g~afV~f~~----~~~----A~~Al~--~l~~~~~~g~~l~v~~a 237 (305)
||.++|||||+|.+ .++ |.+|+. .+||..|+|++|+|.+.
T Consensus 44 Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln 93 (136)
T 2j8a_A 44 SALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILN 93 (136)
T ss_dssp TCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEEC
T ss_pred CCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEEC
Confidence 99999999999996 333 788888 78999999999999985
No 340
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.1e-14 Score=106.97 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=69.3
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+|||..+++++|+++|+.||.|..+. .++.+..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~--------------------------------------~i~~~~~~- 54 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCE--------------------------------------QVNTDSET- 54 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEE--------------------------------------EECCSSSS-
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEE--------------------------------------EeecCCCC-
Confidence 467899999999999999999999999998751 13555443
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
+.|||+|.+.++|.+|+..|||..+.|+.|+|.|+.+++
T Consensus 55 ---~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 55 ---AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp ---EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred ---CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 339999999999999999999999999999999998764
No 341
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.51 E-value=6.3e-14 Score=118.05 Aligned_cols=76 Identities=22% Similarity=0.222 Sum_probs=70.9
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCC-CeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeC-CeeeEEee
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSG-PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLY-GKPIRVNK 110 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~-g~~l~v~~ 110 (305)
..++|||+|||..+|+++|+++|+.|| .|.+|+++.+ .+|||||+|.+.++|.+|++.|||..+. |+.|+|.+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 478999999999999999999999999 9999999764 3699999999999999999999999999 99999999
Q ss_pred CCC
Q psy3016 111 ASS 113 (305)
Q Consensus 111 ~~~ 113 (305)
+.+
T Consensus 194 a~~ 196 (198)
T 1qm9_A 194 SKS 196 (198)
T ss_dssp ECC
T ss_pred ecc
Confidence 875
No 342
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.3e-13 Score=105.93 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=70.3
Q ss_pred cCCCCceEEEcCCCccc-----------cHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcC
Q psy3016 30 SGDGDATIYVGGLDDKV-----------SETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNM 98 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~-----------te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g 98 (305)
....+++|+|.||-... ++++|+++|++||.|.+|.| .+. .++|||||+|.+.++|.+|++.|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 44568899999994332 26899999999999999966 443 3789999999999999999999999
Q ss_pred ceeCCeeeEEeeCCCcc
Q psy3016 99 IKLYGKPIRVNKASSHQ 115 (305)
Q Consensus 99 ~~~~g~~l~v~~~~~~~ 115 (305)
..+.|+.|.|.++.+..
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 99999999999987654
No 343
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.50 E-value=8.7e-14 Score=123.71 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=72.0
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeC-CeeeEE
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLY-GKPIRV 108 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~-g~~l~v 108 (305)
.....++|||+|||..+|+++|+++|+.||.|.+|+++.++ +|||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 44467899999999999999999999999999999998653 589999999999999999999999999 999999
Q ss_pred eeCC
Q psy3016 109 NKAS 112 (305)
Q Consensus 109 ~~~~ 112 (305)
.|++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9975
No 344
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.50 E-value=2.5e-14 Score=105.00 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=67.1
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
.++|||+|||..+++++|+++|+.| .|..+ .+ + +
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~---------------------------------------~i--~----~ 38 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYC---------------------------------------YV--D----R 38 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCE---------------------------------------EE--E----G
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEE---------------------------------------EE--e----C
Confidence 5789999999999999999999999 88765 22 2 5
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+..+.
T Consensus 39 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 39 NKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp GGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 79999999999999999999999999999999999986553
No 345
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.50 E-value=1.3e-13 Score=119.24 Aligned_cols=77 Identities=22% Similarity=0.218 Sum_probs=71.2
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCC-CeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeC-CeeeEEee
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSG-PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLY-GKPIRVNK 110 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~-g~~l~v~~ 110 (305)
..++|||+|||..+|+++|+++|+.|| .|..|+++.+ ++|||||+|.+.++|.+|++.|+|..+. |+.|+|.+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 468999999999999999999999999 9999999663 3689999999999999999999999999 99999999
Q ss_pred CCCc
Q psy3016 111 ASSH 114 (305)
Q Consensus 111 ~~~~ 114 (305)
+.+.
T Consensus 225 a~~~ 228 (229)
T 2adc_A 225 SKST 228 (229)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 8753
No 346
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=7.4e-15 Score=114.83 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=71.2
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCccc----chhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVIL----QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRD 195 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d 195 (305)
...+|||+|||+++|+++|+++|+.||.|. .+ .++.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v---------------------------------------~i~~d 62 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGI---------------------------------------LFVTY 62 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGE---------------------------------------EEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceE---------------------------------------EEEEC
Confidence 357899999999999999999999999863 33 56777
Q ss_pred CCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 196 PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 196 ~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
.+|+++|||||+|.+.++|.+|+.. |+..+.|+.|.|..+..++
T Consensus 63 -~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~e 106 (123)
T 2dha_A 63 -PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTAAE 106 (123)
T ss_dssp -TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECHHH
T ss_pred -CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCHHH
Confidence 5799999999999999999999996 9999999999999886543
No 347
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.50 E-value=1.8e-14 Score=113.14 Aligned_cols=78 Identities=22% Similarity=0.345 Sum_probs=67.9
Q ss_pred ccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCc
Q psy3016 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201 (305)
Q Consensus 122 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~ 201 (305)
-.|||+||+..+|+++|+++|++||.|..+ .+..+ .
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V---------------------------------------~i~~~-----~ 64 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKI---------------------------------------ITFTK-----N 64 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEE---------------------------------------EEEEE-----T
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEE---------------------------------------EEEcC-----C
Confidence 468899999999999999999999999876 22322 3
Q ss_pred cce-EEEEeCChHHHHHHHHHhcCeeecC--eeeEEEEeeecCCc
Q psy3016 202 KGF-AFINYASFEASDASIDAMHGQYLCN--RPISVSYAFKKDSK 243 (305)
Q Consensus 202 ~g~-afV~f~~~~~A~~Al~~l~~~~~~g--~~l~v~~a~~~~~~ 243 (305)
+|+ |||+|.+.++|.+|++.|||..|.| +.|+|.|++.+.-.
T Consensus 65 ~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l~ 109 (130)
T 3zzy_A 65 NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLN 109 (130)
T ss_dssp TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSCC
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCcee
Confidence 677 9999999999999999999999988 99999999877543
No 348
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.49 E-value=1.2e-14 Score=113.98 Aligned_cols=81 Identities=21% Similarity=0.314 Sum_probs=70.9
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCccc--chhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVIL--QTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~ 196 (305)
....+|||+|||+++|+++|+++|+.| .|. .+ .++.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v---------------------------------------~i~~d~ 79 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGI---------------------------------------TLPVDP 79 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEE---------------------------------------ECCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEE---------------------------------------EEEECC
Confidence 346789999999999999999999999 454 44 678887
Q ss_pred CCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 197 ~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
. |+++|||||+|++.++|.+|+.. ++..++||.|.|..+..++
T Consensus 80 ~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~~~e 122 (126)
T 2hgm_A 80 E-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSSQEE 122 (126)
T ss_dssp S-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEECHHH
T ss_pred C-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEECCHHH
Confidence 6 99999999999999999999994 7899999999999886554
No 349
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.49 E-value=3.3e-14 Score=107.90 Aligned_cols=72 Identities=26% Similarity=0.363 Sum_probs=65.1
Q ss_pred EcCCCccccHHHHHHHh------------ccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeee
Q psy3016 39 VGGLDDKVSETLMWELF------------VQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPI 106 (305)
Q Consensus 39 V~nLp~~~te~~L~~~F------------~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l 106 (305)
+.||+..+++++|++.| ++||.|.+|+|+.+. +++++|||||+|.+.++|.+|++.|||..+.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 67888888888887766 999999999999886 47899999999999999999999999999999999
Q ss_pred EEeeC
Q psy3016 107 RVNKA 111 (305)
Q Consensus 107 ~v~~~ 111 (305)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 350
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.48 E-value=4.8e-14 Score=107.19 Aligned_cols=83 Identities=13% Similarity=0.219 Sum_probs=70.6
Q ss_pred ccccccccCCCc-----hhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCccc
Q psy3016 120 VGANIFIGNLDP-----EVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMR 194 (305)
Q Consensus 120 ~~~~l~v~nl~~-----~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 194 (305)
.+++|+|.|+-. +.++++|++.|++||.|..+ .|+.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v---------------------------------------~i~~ 47 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKC---------------------------------------VIFE 47 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEE---------------------------------------EEEE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEE---------------------------------------EEec
Confidence 467888888852 34789999999999999987 5666
Q ss_pred CCCC-CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 195 DPDT-GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 195 d~~~-~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
++.+ ++++|||||+|.+.++|.+|+..|||++++||.|+|.|+....
T Consensus 48 ~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~~ 95 (105)
T 2pe8_A 48 IPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDK 95 (105)
T ss_dssp CSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCHHH
T ss_pred CCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCHHH
Confidence 6543 6889999999999999999999999999999999999997644
No 351
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.48 E-value=1.6e-13 Score=104.22 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=70.8
Q ss_pred CCCceEEEcCC--Cccc--------cHHHHHHHhccCCCeEEEEEcccCCC--CCcceEEEEEEcCHHHHHHHHHHhcCc
Q psy3016 32 DGDATIYVGGL--DDKV--------SETLMWELFVQSGPVVNVHMPKDRVT--QTHQGYGFIEFMGEEDADYAIKIMNMI 99 (305)
Q Consensus 32 ~~~~~l~V~nL--p~~~--------te~~L~~~F~~~G~i~~i~~~~~~~~--~~~~g~afV~f~~~e~A~~Ai~~l~g~ 99 (305)
..++.|.|.|+ +..+ .+++|++.|++||.|.+|.|+++..+ ++++|||||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35778999998 3333 34789999999999999999988754 367899999999999999999999999
Q ss_pred eeCCeeeEEeeCCC
Q psy3016 100 KLYGKPIRVNKASS 113 (305)
Q Consensus 100 ~~~g~~l~v~~~~~ 113 (305)
.+.||.|++.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998754
No 352
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.47 E-value=4.3e-14 Score=109.21 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=63.2
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+||+.++++++|+++|+.||.|..+ .++.|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~---------------------------------------~i~~~---- 51 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYA---------------------------------------DVYRD---- 51 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEE---------------------------------------EECTT----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------------------------------------EEecC----
Confidence 35789999999999999999999999999876 34443
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCee-----eEEEEeee
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRP-----ISVSYAFK 239 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~-----l~v~~a~~ 239 (305)
|||||+|.+.++|.+||+.|||..|+|+. |+|..+..
T Consensus 52 ---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 52 ---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp ---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred ---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 89999999999999999999999999999 55555544
No 353
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.47 E-value=1.1e-13 Score=116.79 Aligned_cols=114 Identities=11% Similarity=0.153 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHh--cCceeCCeeeEEeeCCCccc--------cccccccccccCCCchhcHHHHHHHHhhcCcccchhhh
Q psy3016 85 GEEDADYAIKIM--NMIKLYGKPIRVNKASSHQK--------NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI 154 (305)
Q Consensus 85 ~~e~A~~Ai~~l--~g~~~~g~~l~v~~~~~~~~--------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~ 154 (305)
+.+.+..|++.. ....+.+....+.+...... .....++|||+|||.++|+++|.++|+.||.|..+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v--- 139 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNI--- 139 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEE---
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEE---
Confidence 667788888866 55677776677766532111 11235789999999999999999999999999877
Q ss_pred hhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEE
Q psy3016 155 MNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234 (305)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v 234 (305)
.+.++. ++.++|||||+|++.++|.+|+..++ ..+.|+.|.|
T Consensus 140 ------------------------------------~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V 181 (193)
T 2voo_A 140 ------------------------------------QMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLI 181 (193)
T ss_dssp ------------------------------------EEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEE
T ss_pred ------------------------------------EEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEE
Confidence 556664 48899999999999999999998655 5899999999
Q ss_pred EEeee
Q psy3016 235 SYAFK 239 (305)
Q Consensus 235 ~~a~~ 239 (305)
.++..
T Consensus 182 ~~~~~ 186 (193)
T 2voo_A 182 LFKDD 186 (193)
T ss_dssp EETTT
T ss_pred EEhHH
Confidence 98754
No 354
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.45 E-value=9.6e-14 Score=118.21 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=67.6
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCe--EEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCe----ee
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPV--VNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGK----PI 106 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i--~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~----~l 106 (305)
..++|||+|||..+|+++|+++|+.||.| .+++++.+. +.++|||||+|.+.++|.+|+..|||..+.|+ .+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 46789999999999999999999999999 899998875 44569999999999999999999999999886 45
Q ss_pred EEee
Q psy3016 107 RVNK 110 (305)
Q Consensus 107 ~v~~ 110 (305)
.|++
T Consensus 200 ~vk~ 203 (205)
T 3tyt_A 200 TLKL 203 (205)
T ss_dssp ECEE
T ss_pred EEEe
Confidence 5554
No 355
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.2e-13 Score=104.96 Aligned_cols=76 Identities=22% Similarity=0.378 Sum_probs=64.7
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC-
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT- 198 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~- 198 (305)
..++|||+||+.++|+++|+++|+.||.|. + .++.+..+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~---------------------------------------~~~~~~~~~ 46 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-V---------------------------------------DWPHKAESK 46 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-E---------------------------------------ECTTSSSSC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-E---------------------------------------EEeecCCCC
Confidence 467899999999999999999999999998 4 45666665
Q ss_pred --CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEe
Q psy3016 199 --GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237 (305)
Q Consensus 199 --~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a 237 (305)
|+++|||||+|.+.++|.+|++.|+ .++|+.+.+..+
T Consensus 47 ~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~~ 85 (114)
T 2dnl_A 47 SYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVSS 85 (114)
T ss_dssp CCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEECC
T ss_pred CCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEeccC
Confidence 7999999999999999999999984 367777766654
No 356
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.44 E-value=3.8e-13 Score=104.29 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=71.0
Q ss_pred CCceEEEcCCCc--cc---cHHHHHHHhccCCCeEEEEEcccCC----CCCcceEEEEEEcCHHHHHHHHHHhcCceeCC
Q psy3016 33 GDATIYVGGLDD--KV---SETLMWELFVQSGPVVNVHMPKDRV----TQTHQGYGFIEFMGEEDADYAIKIMNMIKLYG 103 (305)
Q Consensus 33 ~~~~l~V~nLp~--~~---te~~L~~~F~~~G~i~~i~~~~~~~----~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g 103 (305)
.+++|+|.|+-. .+ -++||++.|++||.|.+|.|+.+.. +++++||+||+|.+.++|.+|++.|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999943 22 3689999999999999999998864 45788999999999999999999999999999
Q ss_pred eeeEEeeCCC
Q psy3016 104 KPIRVNKASS 113 (305)
Q Consensus 104 ~~l~v~~~~~ 113 (305)
|.|++.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998754
No 357
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.44 E-value=1.7e-13 Score=106.83 Aligned_cols=77 Identities=22% Similarity=0.436 Sum_probs=67.9
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...++|||+|+ ++|+++|+++|+.||.|..+ .+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v---------------------------------------~i~----- 70 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDL---------------------------------------SMD----- 70 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCE---------------------------------------EEE-----
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEE---------------------------------------EEe-----
Confidence 45689999996 69999999999999999876 222
Q ss_pred CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+..+..
T Consensus 71 -~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 71 -PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp -TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred -CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 5689999999999999999999999999999999999976643
No 358
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=1.1e-13 Score=108.05 Aligned_cols=76 Identities=17% Similarity=0.282 Sum_probs=65.5
Q ss_pred ccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCc
Q psy3016 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201 (305)
Q Consensus 122 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~ 201 (305)
-.|||+||++.+|+++|+++|+.||.|..+ .++. .
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v---------------------------------------~i~~--~---- 60 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRI---------------------------------------VIFK--R---- 60 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEE---------------------------------------EEEE--S----
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEE---------------------------------------EEEe--C----
Confidence 347899999999999999999999999876 3322 1
Q ss_pred cce-EEEEeCChHHHHHHHHHhcCeeecC--eeeEEEEeeecCC
Q psy3016 202 KGF-AFINYASFEASDASIDAMHGQYLCN--RPISVSYAFKKDS 242 (305)
Q Consensus 202 ~g~-afV~f~~~~~A~~Al~~l~~~~~~g--~~l~v~~a~~~~~ 242 (305)
.|| |||+|++.++|.+|+.+|||..|.| +.|+|.|++.+..
T Consensus 61 ~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 61 NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 275 9999999999999999999999987 6999999987753
No 359
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.43 E-value=2e-13 Score=100.50 Aligned_cols=75 Identities=20% Similarity=0.416 Sum_probs=60.7
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
...+|||+||+.++|+++|+++|+.||.|..+ .++.+
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v---------------------------------------~i~~~---- 46 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDV---------------------------------------FIPKP---- 46 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEE---------------------------------------ECCSS----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEE---------------------------------------EEeeC----
Confidence 45789999999999999999999999999887 44543
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCee--ecCeeeEEEEeeecCC
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQY--LCNRPISVSYAFKKDS 242 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~--~~g~~l~v~~a~~~~~ 242 (305)
++|||||+|++.++|.+ +++.. +.|+.|.|.++.++..
T Consensus 47 -srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 47 -FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPKHN 86 (89)
T ss_dssp -CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC----
T ss_pred -CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCCCc
Confidence 79999999999999873 56655 4699999999976643
No 360
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.8e-13 Score=100.27 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=63.5
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
..++|||+|||.++++++|+++|+.||.|..+ .++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v---------------------------------------~i~~~---- 40 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDV---------------------------------------FIPKP---- 40 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEE---------------------------------------ECCSS----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEE---------------------------------------EEecC----
Confidence 35789999999999999999999999999876 34433
Q ss_pred CccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCCc
Q psy3016 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 243 (305)
++|||||+|.+.++|.+|+.. ...+.|+.|.|.++..+...
T Consensus 41 -~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 41 -FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp -CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCCC
T ss_pred -CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCCC
Confidence 689999999999999754321 34559999999999776543
No 361
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.40 E-value=2.5e-13 Score=99.13 Aligned_cols=71 Identities=23% Similarity=0.504 Sum_probs=61.7
Q ss_pred ccccccccCCCchhcHHHHHHHHhhc----C-------cccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAF----G-------VILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNL 188 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 188 (305)
..++|||+|||.++++++|+++|+.| | .|..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~------------------------------------- 47 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAV------------------------------------- 47 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEE-------------------------------------
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEE-------------------------------------
Confidence 35789999999999999999999999 7 55544
Q ss_pred CCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEE
Q psy3016 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSY 236 (305)
Q Consensus 189 ~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~ 236 (305)
.+.. .+|||||+|.+.++|.+|+ .|||..+.|+.|+|+.
T Consensus 48 --~~~~------~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 48 --QINQ------DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp --EECS------SSSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred --EecC------CCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 2232 3899999999999999999 9999999999999974
No 362
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.36 E-value=1.1e-12 Score=99.67 Aligned_cols=82 Identities=20% Similarity=0.277 Sum_probs=66.9
Q ss_pred cccccccCC--Cch--------hcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCC
Q psy3016 121 GANIFIGNL--DPE--------VDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 190 (305)
Q Consensus 121 ~~~l~v~nl--~~~--------~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 190 (305)
+++|.+.|+ +.. ..+++|++.|++||.|..+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v--------------------------------------- 45 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSI--------------------------------------- 45 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEE---------------------------------------
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEE---------------------------------------
Confidence 456666665 222 3457899999999999987
Q ss_pred CcccCCCC--CCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 191 EIMRDPDT--GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 191 ~i~~d~~~--~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
.|+++..+ +.++|+|||+|++.++|.+|+.+|||++++||.|+|.|+....
T Consensus 46 ~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 46 EIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDS 98 (105)
T ss_dssp ECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHH
T ss_pred EEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHHH
Confidence 56666543 4689999999999999999999999999999999999986654
No 363
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.36 E-value=8.1e-13 Score=114.49 Aligned_cols=101 Identities=17% Similarity=0.258 Sum_probs=75.5
Q ss_pred cCceeCCeeeEEeeCCCcc---ccccccccccccCCCchh---------cHHHHHHHHhhcCcccchhhhhhhhhhcCcc
Q psy3016 97 NMIKLYGKPIRVNKASSHQ---KNLDVGANIFIGNLDPEV---------DEKLLYDTFSAFGVILQTPKIMNMIKLYGKP 164 (305)
Q Consensus 97 ~g~~~~g~~l~v~~~~~~~---~~~~~~~~l~v~nl~~~~---------t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~ 164 (305)
+...+.|+.....+..... ......++|||+||+..+ ++++|+++|+.||.|..+
T Consensus 107 ~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v------------- 173 (240)
T 3u1l_A 107 EVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRI------------- 173 (240)
T ss_dssp SSBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEE-------------
T ss_pred cCcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEE-------------
Confidence 3455557654433322211 122346899999999998 899999999999999976
Q ss_pred eeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeee------------cCeee
Q psy3016 165 IRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYL------------CNRPI 232 (305)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~------------~g~~l 232 (305)
.++. ++|||||+|.+.++|..|+.+|+|..+ .|+.|
T Consensus 174 --------------------------~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L 221 (240)
T 3u1l_A 174 --------------------------RYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGL 221 (240)
T ss_dssp --------------------------EEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCC
T ss_pred --------------------------EEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEE
Confidence 3342 489999999999999999999999999 89999
Q ss_pred EEEEeeecCC
Q psy3016 233 SVSYAFKKDS 242 (305)
Q Consensus 233 ~v~~a~~~~~ 242 (305)
.|.||+.+..
T Consensus 222 ~V~wA~~~pn 231 (240)
T 3u1l_A 222 LVKWANEDPD 231 (240)
T ss_dssp EEEECC----
T ss_pred EEEEccCCCC
Confidence 9999976543
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.36 E-value=4.8e-13 Score=101.43 Aligned_cols=72 Identities=10% Similarity=0.328 Sum_probs=61.9
Q ss_pred ccCCCchhcHHHHHHHH------------hhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcc
Q psy3016 126 IGNLDPEVDEKLLYDTF------------SAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIM 193 (305)
Q Consensus 126 v~nl~~~~t~~~l~~~f------------~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 193 (305)
+.+|+..+++++|.+.| ++||.|..+ .++
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v---------------------------------------~i~ 60 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEM---------------------------------------NVC 60 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEE---------------------------------------EEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEE---------------------------------------EEE
Confidence 56777788887777666 999999987 566
Q ss_pred cCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEe
Q psy3016 194 RDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237 (305)
Q Consensus 194 ~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a 237 (305)
.+.. ++++|||||+|.+.++|.+|+..|||++++||.|+|.|+
T Consensus 61 ~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 61 DNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp CSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred eCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 6643 789999999999999999999999999999999999986
No 365
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6.1e-12 Score=94.49 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=63.6
Q ss_pred CceEEEcCCC-------ccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeee
Q psy3016 34 DATIYVGGLD-------DKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPI 106 (305)
Q Consensus 34 ~~~l~V~nLp-------~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l 106 (305)
..+|.|.-.. ..+|+++|+++|++||.|.+|.|+ +.++|||||+|.+.++|.+|++.++ .+.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 4466665544 458999999999999999999997 3578999999999999999999754 4679999
Q ss_pred EEeeCCCccc
Q psy3016 107 RVNKASSHQK 116 (305)
Q Consensus 107 ~v~~~~~~~~ 116 (305)
+|.|+.....
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999887654
No 366
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=3.8e-12 Score=97.64 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=68.2
Q ss_pred cccccccccccCCCchh-----------cHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEe
Q psy3016 117 NLDVGANIFIGNLDPEV-----------DEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFI 185 (305)
Q Consensus 117 ~~~~~~~l~v~nl~~~~-----------t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (305)
.....++|+|.||-... ++++|+++|++||.|..+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v---------------------------------- 56 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKL---------------------------------- 56 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEE----------------------------------
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEE----------------------------------
Confidence 34457889999994322 368999999999999876
Q ss_pred ccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 186 GNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 186 ~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
. +.| ..++|||||+|.+.++|.+|+..|||.+++|+.|+|.|+..+..
T Consensus 57 -----~-i~~---~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 57 -----L-LFD---RHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp -----E-EET---TCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCC
T ss_pred -----E-Eec---CCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 2 233 23799999999999999999999999999999999999976543
No 367
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.33 E-value=3.1e-12 Score=116.55 Aligned_cols=76 Identities=20% Similarity=0.329 Sum_probs=65.8
Q ss_pred CCCCceEEEcC--CCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeC---Ce-
Q psy3016 31 GDGDATIYVGG--LDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLY---GK- 104 (305)
Q Consensus 31 ~~~~~~l~V~n--Lp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~---g~- 104 (305)
...+++||||| |+..+|+++|+++|++||+|.+|.+.. +||||||+|.+.++|++|++.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45577999999 578999999999999999999998854 4699999999999999999999998883 45
Q ss_pred -eeEEeeCC
Q psy3016 105 -PIRVNKAS 112 (305)
Q Consensus 105 -~l~v~~~~ 112 (305)
.|.+.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57777765
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.31 E-value=1.5e-12 Score=100.90 Aligned_cols=83 Identities=12% Similarity=0.226 Sum_probs=67.6
Q ss_pred ccccccccCCCc--h---hcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCccc
Q psy3016 120 VGANIFIGNLDP--E---VDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMR 194 (305)
Q Consensus 120 ~~~~l~v~nl~~--~---~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 194 (305)
.+++|++.|+-. + -.+++|++.|++||.|..+ .|+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v---------------------------------------~I~~ 59 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRV---------------------------------------IIYQ 59 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEE---------------------------------------EEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEE---------------------------------------EEee
Confidence 456777777632 1 2468999999999999987 4555
Q ss_pred CCC----CCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 195 DPD----TGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 195 d~~----~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
+.. +++++|++||+|.+.++|.+|+.+|||++|+||.|+|.|+....
T Consensus 60 ~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~ 110 (118)
T 3ue2_A 60 EKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 110 (118)
T ss_dssp EEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHH
T ss_pred cCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcChHh
Confidence 533 46788999999999999999999999999999999999986543
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.29 E-value=1.5e-11 Score=94.67 Aligned_cols=78 Identities=14% Similarity=0.091 Sum_probs=65.9
Q ss_pred CCCceEEEcCCCcc----------ccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCcee
Q psy3016 32 DGDATIYVGGLDDK----------VSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKL 101 (305)
Q Consensus 32 ~~~~~l~V~nLp~~----------~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~ 101 (305)
..++.|.+.|+=.. --++||++.|++||.|.+|.|.++. ++|||||+|.+.++|.+|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34667888887332 1246889999999999999997663 589999999999999999999999999
Q ss_pred CCeeeEEeeCCC
Q psy3016 102 YGKPIRVNKASS 113 (305)
Q Consensus 102 ~g~~l~v~~~~~ 113 (305)
.||.|++.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999998753
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.13 E-value=6.7e-11 Score=90.93 Aligned_cols=66 Identities=15% Similarity=0.353 Sum_probs=56.2
Q ss_pred hcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCCh
Q psy3016 133 VDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212 (305)
Q Consensus 133 ~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~ 212 (305)
-.+++|++.|++||.|..+ .+.++ .++|+|||+|++.
T Consensus 29 el~edl~~~f~kfG~V~~v---------------------------------------~i~~~----~~~G~~fV~f~~~ 65 (114)
T 3s6e_A 29 EIKDDVIEECNKHGGVIHI---------------------------------------YVDKN----SAQGNVYVKCPSI 65 (114)
T ss_dssp HHHHHHHHHHTTTTCCSEE---------------------------------------EECTT----CTTCCEEEECSSH
T ss_pred HHHHHHHHHHhccCCEEEE---------------------------------------EEecC----CCcEEEEEEECCH
Confidence 3467899999999999876 33333 2589999999999
Q ss_pred HHHHHHHHHhcCeeecCeeeEEEEeeecC
Q psy3016 213 EASDASIDAMHGQYLCNRPISVSYAFKKD 241 (305)
Q Consensus 213 ~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 241 (305)
++|.+|+..|||++|+||.|+|.|+....
T Consensus 66 e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 66 AAAIAAVNALHGRWFAGKMITAAYVPLPT 94 (114)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEEECHHH
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEEcHHH
Confidence 99999999999999999999999986554
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=7.8e-11 Score=88.41 Aligned_cols=83 Identities=13% Similarity=0.324 Sum_probs=64.4
Q ss_pred CeeeEEeeCCCccccccccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcce
Q psy3016 103 GKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGAN 182 (305)
Q Consensus 103 g~~l~v~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (305)
.++|.|.|...... ..+..+++++|+++|+.||.|..+
T Consensus 10 ~~~~~v~w~~~~~~-----------~~~~~~te~~L~~~F~~~G~V~~v------------------------------- 47 (100)
T 2d9o_A 10 TPKLKLKWKCKKED-----------ESKGGYSKDVLLRLLQKYGEVLNL------------------------------- 47 (100)
T ss_dssp SCEEEEECCCCSSC-----------SCCCSCCHHHHHHHHHTTSCEEEE-------------------------------
T ss_pred cceEEEeeeccCcc-----------CcCCCCCHHHHHHHHHhcCCEEEE-------------------------------
Confidence 45677777543210 113578999999999999999876
Q ss_pred eEeccCCCCcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 183 IFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 183 ~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
.++ ++++|||||+|++.++|.+|+..+++ +.|+.|+|.|+..+..
T Consensus 48 --------~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 48 --------VLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp --------EEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred --------EEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 333 46899999999999999999998555 6899999999876643
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.11 E-value=8e-11 Score=107.23 Aligned_cols=75 Identities=16% Similarity=0.328 Sum_probs=63.0
Q ss_pred cccccccccC--CCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC
Q psy3016 119 DVGANIFIGN--LDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196 (305)
Q Consensus 119 ~~~~~l~v~n--l~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~ 196 (305)
.+.++|||+| |+..+|+++|+++|++||.|..+ ..+.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v-----------------------------------------~~~~ 54 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDAL-----------------------------------------LMPP 54 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEE-----------------------------------------ECCT
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEE-----------------------------------------EEeC
Confidence 3568999999 57889999999999999999865 2221
Q ss_pred CCCCccceEEEEeCChHHHHHHHHHhcCeee---cCe--eeEEEEee
Q psy3016 197 DTGNSKGFAFINYASFEASDASIDAMHGQYL---CNR--PISVSYAF 238 (305)
Q Consensus 197 ~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~---~g~--~l~v~~a~ 238 (305)
+||||||+|++.++|.+|+++|||+++ .|+ .|.+.|+.
T Consensus 55 ----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 55 ----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp ----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred ----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 479999999999999999999999988 244 68888874
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=8.2e-10 Score=85.28 Aligned_cols=82 Identities=17% Similarity=0.147 Sum_probs=70.9
Q ss_pred CCCcCCCCceEEEcCCCcc-ccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcC-HHHHHHHHHHhc--CceeC
Q psy3016 27 GGESGDGDATIYVGGLDDK-VSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMG-EEDADYAIKIMN--MIKLY 102 (305)
Q Consensus 27 ~~~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~-~e~A~~Ai~~l~--g~~~~ 102 (305)
..-.-...+.|+|+||+.. ++.++|+++|+.||+|..|.++.+. ..|||.|.+ .++|..|++.|+ +..|.
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 3345566889999999999 9999999999999999999998876 359999999 899999999995 78899
Q ss_pred CeeeEEeeCCCc
Q psy3016 103 GKPIRVNKASSH 114 (305)
Q Consensus 103 g~~l~v~~~~~~ 114 (305)
|..++++.....
T Consensus 85 g~~~~~evL~Ge 96 (121)
T 1owx_A 85 NKEVTWEVLEGE 96 (121)
T ss_dssp SSSEEEEECCHH
T ss_pred CcEEEEEECCCH
Confidence 998888876543
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=1.1e-09 Score=79.62 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=61.3
Q ss_pred CCceEEEcCCCc----cccH----HHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCe
Q psy3016 33 GDATIYVGGLDD----KVSE----TLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGK 104 (305)
Q Consensus 33 ~~~~l~V~nLp~----~~te----~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~ 104 (305)
...||+|.-.+. .+-. .+|.+.|+.||+|..++++.++ +||+|.+.++|.+|++ |||..+.||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 345888877662 3333 5789999999999999998875 8999999999999999 999999999
Q ss_pred eeEEeeCCC
Q psy3016 105 PIRVNKASS 113 (305)
Q Consensus 105 ~l~v~~~~~ 113 (305)
.|+|+.+.+
T Consensus 77 ~LkV~lkt~ 85 (91)
T 2dnr_A 77 TITIALKSP 85 (91)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999998775
No 375
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.89 E-value=4.1e-09 Score=90.31 Aligned_cols=68 Identities=18% Similarity=0.082 Sum_probs=60.8
Q ss_pred ccHHHHHHHhccCCCeEEEEEcccC----CCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeeeEEeeCCC
Q psy3016 46 VSETLMWELFVQSGPVVNVHMPKDR----VTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS 113 (305)
Q Consensus 46 ~te~~L~~~F~~~G~i~~i~~~~~~----~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l~v~~~~~ 113 (305)
-.+++|++.|++||.|.++.|..+. .+++++|++||+|.+.++|.+|++.|||..+.||.|.+.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3567899999999999999998544 3458999999999999999999999999999999999998763
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=4.8e-09 Score=76.58 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=60.5
Q ss_pred CCceEEEcCCCcc-----ccH----HHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCC
Q psy3016 33 GDATIYVGGLDDK-----VSE----TLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYG 103 (305)
Q Consensus 33 ~~~~l~V~nLp~~-----~te----~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g 103 (305)
...||+|.-++.. +-. .+|.+.|+.||+|..++++.++ +||+|.+.++|.+||+ |||..+.|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 3568999877632 322 5688999999999999998875 9999999999999999 99999999
Q ss_pred eeeEEeeCC
Q psy3016 104 KPIRVNKAS 112 (305)
Q Consensus 104 ~~l~v~~~~ 112 (305)
|.|+|++-.
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999998754
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.76 E-value=7.9e-09 Score=88.49 Aligned_cols=71 Identities=13% Similarity=0.215 Sum_probs=60.1
Q ss_pred hcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcc----cCCCCCCccceEEEE
Q psy3016 133 VDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIM----RDPDTGNSKGFAFIN 208 (305)
Q Consensus 133 ~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~----~d~~~~~~~g~afV~ 208 (305)
-.+++|.+.|++||.|..+ .|. .+..++.++|++||+
T Consensus 141 e~~~dl~~e~~~~G~v~~~---------------------------------------~v~~~~~~~~~~~~~~G~~fv~ 181 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRV---------------------------------------IIYQEKQGEEEDAEIIVKIFVE 181 (222)
T ss_dssp THHHHHHHHHTTTSCEEEE---------------------------------------EEEEEECCSSTTCCEEEEEEEE
T ss_pred HHHHHHHHHHHccCCeEEE---------------------------------------EEecCCCCcccCcCceeEEEEE
Confidence 4567899999999999876 333 233456899999999
Q ss_pred eCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 209 YASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 209 f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
|.+.++|.+|+..|||++++||.|.+.|......
T Consensus 182 f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f 215 (222)
T 3dxb_A 182 FSIASETHKAIQALNGRWFAGRKVVAEVYDQERF 215 (222)
T ss_dssp ESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHH
T ss_pred ECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHh
Confidence 9999999999999999999999999999865543
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=9.8e-09 Score=79.21 Aligned_cols=77 Identities=13% Similarity=0.063 Sum_probs=65.7
Q ss_pred ccccccccccCCCch-hcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCC
Q psy3016 118 LDVGANIFIGNLDPE-VDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDP 196 (305)
Q Consensus 118 ~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~ 196 (305)
....+.|||+||+.. ++.++|+++|+.||.|.+| +++.+.
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~V---------------------------------------d~~~g~ 55 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWI---------------------------------------DFVRGA 55 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEE---------------------------------------ECCTTC
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEE---------------------------------------EEecCC
Confidence 445788999999999 9999999999999999987 556554
Q ss_pred CCCCccceEEEEeCC-hHHHHHHHHHhc--CeeecCeeeEEEEeee
Q psy3016 197 DTGNSKGFAFINYAS-FEASDASIDAMH--GQYLCNRPISVSYAFK 239 (305)
Q Consensus 197 ~~~~~~g~afV~f~~-~~~A~~Al~~l~--~~~~~g~~l~v~~a~~ 239 (305)
. .|||+|.+ .++|..|+.++| +..|+|..+++....-
T Consensus 56 ~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 56 K------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp S------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred C------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 3 59999999 899999999995 6788999888887643
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=1.6e-08 Score=73.37 Aligned_cols=57 Identities=18% Similarity=0.377 Sum_probs=49.4
Q ss_pred HHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCccceEEEEeCChHHH
Q psy3016 136 KLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEAS 215 (305)
Q Consensus 136 ~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~g~afV~f~~~~~A 215 (305)
.+|.+.|..||.|..+ ++..| .+||+|.+.++|
T Consensus 30 ~~L~~~F~~~G~Vi~v---------------------------------------r~~~d--------~~fVtF~d~~sA 62 (91)
T 2dnr_A 30 DELLQQFASFGEVILI---------------------------------------RFVED--------KMWVTFLEGSSA 62 (91)
T ss_dssp HHHHHHHHTTCCEEEE---------------------------------------EECSS--------SEEEEESSHHHH
T ss_pred HHHHHHHHhCCCeEEE---------------------------------------EEecC--------CEEEEECChHHH
Confidence 5689999999998876 44544 289999999999
Q ss_pred HHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 216 DASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 216 ~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
.+|+. |||..++||.|+|+++.+.
T Consensus 63 laAi~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 63 LNVLS-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp HHGGG-GTTCEETTEEEEEEECCCS
T ss_pred HHHHh-cCCeEeCCeEEEEEeCCCC
Confidence 99999 9999999999999998654
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.58 E-value=2.9e-07 Score=68.55 Aligned_cols=75 Identities=24% Similarity=0.268 Sum_probs=69.1
Q ss_pred cCCCCceEEEcCCCccccHHHHHHHhccC-----CCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCe
Q psy3016 30 SGDGDATIYVGGLDDKVSETLMWELFVQS-----GPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGK 104 (305)
Q Consensus 30 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~-----G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~ 104 (305)
..+..++|-+-|||..+++..|+.+++++ |.|..|.+..|- +=|+|+|.+...|.+|.=.|+|.+|.|+
T Consensus 17 ~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr 90 (117)
T 2l9w_A 17 SKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGK 90 (117)
T ss_dssp TTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTE
T ss_pred CccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCe
Confidence 45568899999999999999999999999 999999999886 5699999999999999988999999999
Q ss_pred eeEEee
Q psy3016 105 PIRVNK 110 (305)
Q Consensus 105 ~l~v~~ 110 (305)
+|++.-
T Consensus 91 ~Lr~gT 96 (117)
T 2l9w_A 91 VIRSGT 96 (117)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 999974
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=8.8e-08 Score=69.89 Aligned_cols=71 Identities=17% Similarity=0.305 Sum_probs=56.2
Q ss_pred ccccccccCCCc-----hhcH----HHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCC
Q psy3016 120 VGANIFIGNLDP-----EVDE----KLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDP 190 (305)
Q Consensus 120 ~~~~l~v~nl~~-----~~t~----~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 190 (305)
+..+|+|..++. ++.+ .+|.+.|..||.|..+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilv--------------------------------------- 54 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLV--------------------------------------- 54 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEE---------------------------------------
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEE---------------------------------------
Confidence 456777776652 2323 5588899999988766
Q ss_pred CcccCCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEee
Q psy3016 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238 (305)
Q Consensus 191 ~i~~d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 238 (305)
++..|. +||+|.+.++|.+||. |||..++||.|+|++..
T Consensus 55 r~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 55 RINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp EEETTE--------EEEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred EEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 455552 9999999999999999 99999999999999753
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.24 E-value=3.5e-06 Score=62.76 Aligned_cols=73 Identities=14% Similarity=0.084 Sum_probs=62.4
Q ss_pred ccccccccCCCchhcHHHHHHHHhhc-----CcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCccc
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAF-----GVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMR 194 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~-----g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 194 (305)
..++|-+-|||..+++..|+.+.+++ |.+..+ ..
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI-----------------------------------------~L 58 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKI-----------------------------------------LL 58 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEE-----------------------------------------EE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEE-----------------------------------------EE
Confidence 35789999999999999999999999 776633 33
Q ss_pred CCCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEe
Q psy3016 195 DPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237 (305)
Q Consensus 195 d~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a 237 (305)
.++ .+-|+|+|.+..+|.+|.-+|+|.+|.|++|+|.-.
T Consensus 59 ~pD----H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 59 VSD----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp ETT----TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred ecC----CCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 333 557999999999999999999999999999998754
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=2.5e-05 Score=57.60 Aligned_cols=89 Identities=22% Similarity=0.347 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCccccHHHHHHHhcc-----CCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeee
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQ-----SGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPI 106 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~-----~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l 106 (305)
...++|.|.|||..++++.|.-+|+. =|+|..+.... +-|+|+|.+.+.|++.++. ....+++..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 45679999999999999999999997 25999998744 4589999999999999983 3678899999
Q ss_pred EEeeCCCccccccccccccccCCCchhc
Q psy3016 107 RVNKASSHQKNLDVGANIFIGNLDPEVD 134 (305)
Q Consensus 107 ~v~~~~~~~~~~~~~~~l~v~nl~~~~t 134 (305)
.|....... ..++++.+|++.++
T Consensus 77 sV~P~~~~~-----~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPPRA-----PARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCCCC-----CCCCCCCSCCCCCC
T ss_pred EEEcCCCCC-----cceEeeecCCCCCC
Confidence 998765543 35789999988764
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.71 E-value=0.00011 Score=54.35 Aligned_cols=76 Identities=20% Similarity=0.144 Sum_probs=64.3
Q ss_pred CCCceEEEcCCCccc-cH----HHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCCeee
Q psy3016 32 DGDATIYVGGLDDKV-SE----TLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPI 106 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~-te----~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~l 106 (305)
+...+|+|.||+..+ +. +.++.+|..|+++......+.- +-..|.|.+.++|.+|...|++..+.|+.+
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 346789999999866 32 5678999999999888876653 346899999999999999999999999999
Q ss_pred EEeeCCC
Q psy3016 107 RVNKASS 113 (305)
Q Consensus 107 ~v~~~~~ 113 (305)
+|.++..
T Consensus 77 r~YFgq~ 83 (104)
T 1wey_A 77 KLYFAQT 83 (104)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9998774
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.50 E-value=0.00035 Score=50.70 Aligned_cols=69 Identities=9% Similarity=0.065 Sum_probs=57.3
Q ss_pred ceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCC--CcceEEEEEEcCHHHHHHHHHHhcCceeCC
Q psy3016 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQ--THQGYGFIEFMGEEDADYAIKIMNMIKLYG 103 (305)
Q Consensus 35 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~--~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g 103 (305)
++|-|.+||+.+||+++.+.+..+..+.....+..+.+. ..-.-|||.|.+.+++....+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 478999999999999999999999988777776655332 223569999999999999999999987764
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.45 E-value=0.00038 Score=50.74 Aligned_cols=65 Identities=15% Similarity=0.251 Sum_probs=52.0
Q ss_pred cCCCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhc
Q psy3016 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMN 97 (305)
Q Consensus 24 ~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~ 97 (305)
+.++.........++| ++|+.+...||.++|+.||- ..|+.+.| .-|||.|.+.+.|..|+..+.
T Consensus 6 l~g~d~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 6 SGGPDLQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSCCCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 4455555555556666 99999999999999999994 55777777 469999999999999999753
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.14 E-value=0.00054 Score=50.69 Aligned_cols=73 Identities=10% Similarity=0.080 Sum_probs=58.1
Q ss_pred cccccccCCCchhc-----HHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccC
Q psy3016 121 GANIFIGNLDPEVD-----EKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRD 195 (305)
Q Consensus 121 ~~~l~v~nl~~~~t-----~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d 195 (305)
-++|+|+||+.++- .+.++++|..|+.+... ..+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF---------------------------------------~~l-- 43 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTF---------------------------------------QYF-- 43 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEE---------------------------------------EEE--
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcce---------------------------------------eec--
Confidence 46799999988652 25678899999877653 111
Q ss_pred CCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEee
Q psy3016 196 PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238 (305)
Q Consensus 196 ~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 238 (305)
++-.-..|.|.+.++|.+|-..||+..|.|+.++|=|+.
T Consensus 44 ----kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 44 ----KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp ----TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred ----CcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 123357899999999999999999999999999999986
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.95 E-value=0.0053 Score=46.60 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=61.0
Q ss_pred CCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhcCceeCC-eeeEEe
Q psy3016 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYG-KPIRVN 109 (305)
Q Consensus 31 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g-~~l~v~ 109 (305)
....+.|.|-+.|... ...+.+.|++||+|.+.... ....+-.|.|.+..+|++|+. .||..+.| -.|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 4457789999999985 56778889999999988872 134789999999999999999 59999984 778887
Q ss_pred eCCC
Q psy3016 110 KASS 113 (305)
Q Consensus 110 ~~~~ 113 (305)
+...
T Consensus 93 p~~d 96 (119)
T 1wwh_A 93 PCID 96 (119)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 7543
No 389
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.66 E-value=0.0029 Score=46.19 Aligned_cols=70 Identities=7% Similarity=0.013 Sum_probs=52.0
Q ss_pred CceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCC--CcceEEEEEEcCHHHHHHHHHHhcCceeCC
Q psy3016 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQ--THQGYGFIEFMGEEDADYAIKIMNMIKLYG 103 (305)
Q Consensus 34 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~--~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g 103 (305)
+-+|-|..||+.+||+++.+.+..+-++.....+..+.+. ..-.-|||.|.+.++.....+.++|..+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 4579999999999999999888876554433333322221 122458999999999999999999987754
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.61 E-value=0.0024 Score=46.66 Aligned_cols=54 Identities=13% Similarity=0.242 Sum_probs=46.1
Q ss_pred eEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhc
Q psy3016 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMN 97 (305)
Q Consensus 36 ~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~ 97 (305)
.||+-++|+.+...||.++|+.|| -..|+.+.| .-|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 344449999999999999999999 566888777 369999999999999999764
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.25 E-value=0.011 Score=42.85 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=49.8
Q ss_pred cccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCcc
Q psy3016 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSK 202 (305)
Q Consensus 123 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~~ 202 (305)
+|.|.+||+.+|++++.+.++....+... -|+. .++..+ -...
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~-------------------------------~fv~---G~~s~~---~~~~ 45 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYF-------------------------------EFFS---NDTSLY---PHMY 45 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEE-------------------------------EEEE---SCCSST---TCCC
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEE-------------------------------EEeC---CccCCC---CCcc
Confidence 58899999999999999999987655432 0110 011111 1234
Q ss_pred ceEEEEeCChHHHHHHHHHhcCeee
Q psy3016 203 GFAFINYASFEASDASIDAMHGQYL 227 (305)
Q Consensus 203 g~afV~f~~~~~A~~Al~~l~~~~~ 227 (305)
..|||.|.+.++...-...++|..|
T Consensus 46 SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 46 ARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp EEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred eEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 5699999999999999999999887
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.91 E-value=0.01 Score=45.63 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=56.6
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEE-EEEcccCC--------CC-----CcceEEEEEEcCHHHHHHHHHHhcC
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVN-VHMPKDRV--------TQ-----THQGYGFIEFMGEEDADYAIKIMNM 98 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-i~~~~~~~--------~~-----~~~g~afV~f~~~e~A~~Ai~~l~g 98 (305)
+...|.|-+.|...+ ..+-+.|++||.|.+ +....... .. ....+-.|+|++..+|.+|+. .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 456788889987765 456678899999876 22211000 00 124678999999999999999 599
Q ss_pred ceeCCeeeEEeeCCC
Q psy3016 99 IKLYGKPIRVNKASS 113 (305)
Q Consensus 99 ~~~~g~~l~v~~~~~ 113 (305)
..+.|..|-|.+...
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999999999988764
No 393
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.52 E-value=0.0056 Score=57.52 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=43.0
Q ss_pred CCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHH
Q psy3016 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94 (305)
Q Consensus 33 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~ 94 (305)
..+.|+|. .|..+++++|.++|++||+|.++.+..+. .-||.|+|.+.+.+..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 45799997 79999999999999999999999887653 2799999999999987765
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.30 E-value=0.033 Score=40.53 Aligned_cols=56 Identities=23% Similarity=0.332 Sum_probs=44.8
Q ss_pred ccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCC
Q psy3016 120 VGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTG 199 (305)
Q Consensus 120 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~ 199 (305)
....+++ +.|..+-..+|.++|+.||-|.- +++-|
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I----------------------------------------~WidD---- 49 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQI----------------------------------------SWIDD---- 49 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCCC----------------------------------------EEEET----
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEEE----------------------------------------EEEcC----
Confidence 3456666 99999999999999999996542 23333
Q ss_pred CccceEEEEeCChHHHHHHHHHhc
Q psy3016 200 NSKGFAFINYASFEASDASIDAMH 223 (305)
Q Consensus 200 ~~~g~afV~f~~~~~A~~Al~~l~ 223 (305)
..|||-|.+.+.|..|++.+.
T Consensus 50 ---TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 50 ---TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp ---TEEEEECSCHHHHHHHHHHHH
T ss_pred ---CeEEEEecCHHHHHHHHHhcc
Confidence 369999999999999999774
No 395
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.27 E-value=0.038 Score=40.64 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=56.2
Q ss_pred cccccccCCCchhcHHHHHHHHhhc-----CcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAF-----GVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRD 195 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~-----g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d 195 (305)
..+|.|.|||..+.++.|.-.|+.- |.|..+ .++
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v-----------------------------------------~~~ 46 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSW-----------------------------------------QRL 46 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEE-----------------------------------------EEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEE-----------------------------------------EEc
Confidence 4689999999999999999999862 455433 222
Q ss_pred CCCCCccceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeecCC
Q psy3016 196 PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242 (305)
Q Consensus 196 ~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 242 (305)
.+-|+|+|.+.+.|.+.++ -..+.+.+..|.|.-..+++.
T Consensus 47 ------~~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~~~~~ 86 (104)
T 2dhx_A 47 ------GCGGVLTFREPADAERVLA-QADHELHGAQLSLRPAPPRAP 86 (104)
T ss_dssp ------TTEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECCCCCC
T ss_pred ------CCcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCCCCCc
Confidence 1578999999999988887 236678889999976555543
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.96 E-value=0.048 Score=39.71 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=47.9
Q ss_pred ccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCc
Q psy3016 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201 (305)
Q Consensus 122 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~ 201 (305)
-+|.|..||+.+|++++.+.++..-++.+. .....++... ...
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~----------------------------------~fv~G~~s~~---~~~ 52 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYF----------------------------------EFFAADLSLY---PHL 52 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEEC----------------------------------CCCCCCSSSC---CSC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceE----------------------------------EEeCCccCCC---CCc
Confidence 468899999999999998887764433221 1111111111 123
Q ss_pred cceEEEEeCChHHHHHHHHHhcCeee
Q psy3016 202 KGFAFINYASFEASDASIDAMHGQYL 227 (305)
Q Consensus 202 ~g~afV~f~~~~~A~~Al~~l~~~~~ 227 (305)
...|||.|.+.++...-...++|..|
T Consensus 53 ~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 53 YSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 34599999999999999999999887
No 397
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.44 E-value=0.097 Score=39.61 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=55.8
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
...|.|.+.+... ...|...|+.||.|... .. -.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~-----------------------------------------~~----~~ 57 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKH-----------------------------------------VM----SN 57 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEE-----------------------------------------EE----CS
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEe-----------------------------------------cc----CC
Confidence 4678888898875 56677889999999863 11 12
Q ss_pred ccceEEEEeCChHHHHHHHHHhcCeeecC-eeeEEEEeeec
Q psy3016 201 SKGFAFINYASFEASDASIDAMHGQYLCN-RPISVSYAFKK 240 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~~~~~g-~~l~v~~a~~~ 240 (305)
..+...|+|++..+|.+||. .||..++| -.|-|..+.++
T Consensus 58 ~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~d~ 97 (119)
T 1wwh_A 58 TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCIDK 97 (119)
T ss_dssp SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECCCH
T ss_pred CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECCCH
Confidence 35688999999999999999 69999975 56667776433
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.21 E-value=0.31 Score=37.39 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=32.8
Q ss_pred cceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEeeec
Q psy3016 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240 (305)
Q Consensus 202 ~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 240 (305)
.+...|+|++..+|.+||. -||..|.|.-|=|..+.+.
T Consensus 62 ~NWikItYds~~~A~rAL~-~NG~ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 62 NSWTKITYDNPASAVDALL-ENGAVFNGVLLGVIPYTKD 99 (132)
T ss_dssp TTEEEEEBSSHHHHHHHHT-TTTCEETTEECEEEECCHH
T ss_pred CcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEEEEECCHH
Confidence 5678999999999999999 7999999998888887543
No 399
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.11 E-value=0.044 Score=39.97 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=43.4
Q ss_pred ccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCCc
Q psy3016 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNS 201 (305)
Q Consensus 122 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~~ 201 (305)
..+++ +.|..+-..+|.++|+.||.|.- +++-|
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I----------------------------------------~WidD------ 39 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQI----------------------------------------SWIDD------ 39 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEE----------------------------------------EEEET------
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEE----------------------------------------EEEcC------
Confidence 45666 99999999999999999995542 22333
Q ss_pred cceEEEEeCChHHHHHHHHHhc
Q psy3016 202 KGFAFINYASFEASDASIDAMH 223 (305)
Q Consensus 202 ~g~afV~f~~~~~A~~Al~~l~ 223 (305)
..|||-|.+.+.|..|+..+.
T Consensus 40 -TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 40 -TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp -TEEEEEEEEECHHHHHHHHHT
T ss_pred -CeEEEEecCHHHHHHHHHhcc
Confidence 369999999999999999874
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.26 E-value=0.34 Score=46.12 Aligned_cols=65 Identities=18% Similarity=0.305 Sum_probs=50.6
Q ss_pred cCCCCCcCCCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHhc
Q psy3016 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMN 97 (305)
Q Consensus 24 ~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~ 97 (305)
++++.........++|+ +|..+...+|.++|+.||. ..|+.+.+ ..|||.|.+.+.|..++..+.
T Consensus 430 l~g~d~~~~R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 430 LEGPDLQPKRDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp SSSCCCCCCGGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 44444444445577776 9999999999999999995 45666555 469999999999999999875
No 401
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=89.50 E-value=0.13 Score=48.27 Aligned_cols=57 Identities=16% Similarity=0.246 Sum_probs=40.0
Q ss_pred cccccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCC
Q psy3016 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDT 198 (305)
Q Consensus 119 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~ 198 (305)
...+.|+|. .+..+++.+|.+.|..||.|..+ ..+...
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~-----------------------------------------~~~~~~ 88 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNH-----------------------------------------FFYESF 88 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCE-----------------------------------------EEECSS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceE-----------------------------------------EEEccC
Confidence 345789997 78889999999999999999864 444333
Q ss_pred CCccceEEEEeCChHHHHHHHH
Q psy3016 199 GNSKGFAFINYASFEASDASID 220 (305)
Q Consensus 199 ~~~~g~afV~f~~~~~A~~Al~ 220 (305)
| .||.|+|.+.+++..++.
T Consensus 89 g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 89 G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp S---EEEEEECC---CCHHHHS
T ss_pred C---eEEEEEeCCHHHHHHHHh
Confidence 3 799999999988886654
No 402
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=86.69 E-value=0.72 Score=24.14 Aligned_cols=7 Identities=71% Similarity=1.958 Sum_probs=2.8
Q ss_pred CCCCCCC
Q psy3016 291 GLPPPPP 297 (305)
Q Consensus 291 ~~ppppp 297 (305)
+.|||||
T Consensus 12 giPpPpp 18 (26)
T 2v8f_C 12 SIPPPPP 18 (26)
T ss_pred CCCCCCC
Confidence 3444333
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=62.59 E-value=12 Score=35.26 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=43.1
Q ss_pred cccccccCCCchhcHHHHHHHHhhcCcccchhhhhhhhhhcCcceeeecCccccccCCCcceeEeccCCCCcccCCCCCC
Q psy3016 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGN 200 (305)
Q Consensus 121 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~d~~~~~ 200 (305)
...++|+ ++..+...+|.+.|+.||.+... ++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~----------------------------------------wi------- 471 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQIS----------------------------------------WI------- 471 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEE----------------------------------------EC-------
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEE----------------------------------------EE-------
Confidence 3455555 88888999999999999976421 11
Q ss_pred ccceEEEEeCChHHHHHHHHHhcC
Q psy3016 201 SKGFAFINYASFEASDASIDAMHG 224 (305)
Q Consensus 201 ~~g~afV~f~~~~~A~~Al~~l~~ 224 (305)
....|||.|.+.+.|..++.+++.
T Consensus 472 ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 472 DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHh
Confidence 134699999999999999998853
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=56.48 E-value=49 Score=23.28 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=48.3
Q ss_pred CCCceEEEcCCCccccHHHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEcCHHHHHHHHHHh
Q psy3016 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96 (305)
Q Consensus 32 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l 96 (305)
...|-|-|-|+|..+-..++--.....|.-..|..+. |-|.|.|.+.+.-..|+..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 4567888999999999998888888888777787743 56999999999999999876
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=50.56 E-value=11 Score=25.25 Aligned_cols=36 Identities=8% Similarity=0.165 Sum_probs=27.0
Q ss_pred cceEEEEeCChHHHHHHHHHhcCeeecCeeeEEEEee
Q psy3016 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238 (305)
Q Consensus 202 ~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 238 (305)
..|.||+-.. +.|..++..|++.++.|+.+.++.+.
T Consensus 40 d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 40 DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 3478999864 47899999999999999999987653
No 406
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=33.84 E-value=8.3 Score=30.03 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=18.3
Q ss_pred HHHHHHhccCCCeEEEEEcccCCCCCcceEEEEEEc
Q psy3016 49 TLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFM 84 (305)
Q Consensus 49 ~~L~~~F~~~G~i~~i~~~~~~~~~~~~g~afV~f~ 84 (305)
+|+.++|...|.|...+. .+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 456677888887776654 5699999865
No 407
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=29.05 E-value=1.2e+02 Score=21.73 Aligned_cols=48 Identities=8% Similarity=0.159 Sum_probs=29.4
Q ss_pred ccccHHHHHHHhcc-CC---CeEEE-EEcccCCCCCcceEEEEEEcCHHHHHHH
Q psy3016 44 DKVSETLMWELFVQ-SG---PVVNV-HMPKDRVTQTHQGYGFIEFMGEEDADYA 92 (305)
Q Consensus 44 ~~~te~~L~~~F~~-~G---~i~~i-~~~~~~~~~~~~g~afV~f~~~e~A~~A 92 (305)
...+..+|++.+.+ |+ .+.-| .+...-..|++.|||.| |++.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56677888887764 44 22222 22222245788899877 7777776644
No 408
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=25.02 E-value=1.2e+02 Score=21.74 Aligned_cols=47 Identities=17% Similarity=0.072 Sum_probs=29.5
Q ss_pred ccccHHHHHHHhcc-CC---CeEEE-EEcccCCCCCcceEEEEEEcCHHHHHH
Q psy3016 44 DKVSETLMWELFVQ-SG---PVVNV-HMPKDRVTQTHQGYGFIEFMGEEDADY 91 (305)
Q Consensus 44 ~~~te~~L~~~F~~-~G---~i~~i-~~~~~~~~~~~~g~afV~f~~~e~A~~ 91 (305)
...+..+|++.+.+ |+ .+.-| .+...-..|++.|||.| |++.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56777888887764 34 22222 22223345788899977 788887764
No 409
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=24.45 E-value=57 Score=16.59 Aligned_cols=11 Identities=45% Similarity=1.084 Sum_probs=5.3
Q ss_pred CCCCCCCCCCC
Q psy3016 288 NIMGLPPPPPS 298 (305)
Q Consensus 288 ~~~~~ppppp~ 298 (305)
+-++.||||--
T Consensus 8 nmfsvppppi~ 18 (26)
T 2bn5_B 8 NMFSVPPPPIL 18 (26)
T ss_dssp CCCSCCCCSCC
T ss_pred ceecCCCCCcc
Confidence 44455555433
No 410
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=23.14 E-value=1.5e+02 Score=21.57 Aligned_cols=48 Identities=10% Similarity=0.047 Sum_probs=29.4
Q ss_pred ccccHHHHHHHhcc-CCC---eEEE-EEcccCCCCCcceEEEEEEcCHHHHHHH
Q psy3016 44 DKVSETLMWELFVQ-SGP---VVNV-HMPKDRVTQTHQGYGFIEFMGEEDADYA 92 (305)
Q Consensus 44 ~~~te~~L~~~F~~-~G~---i~~i-~~~~~~~~~~~~g~afV~f~~~e~A~~A 92 (305)
...+..+|++.+.+ |+. +.-| .+...-..|++.|||.| |++.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35677888877664 442 2222 22222245788899977 7888887643
Done!