Your job contains 1 sequence.
>psy3016
MSLGREIQAGISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGP
VVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDV
GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVG
ANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK
DSKGDRHGSAAERLLAAQNPLSQADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPPSGL
RASAL
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3016
(305 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|H9L019 - symbol:SF3B4 "Uncharacterized protein"... 580 3.7e-97 2
UNIPROTKB|F1MWR2 - symbol:SF3B4 "Uncharacterized protein"... 580 3.7e-97 2
UNIPROTKB|E2R5T2 - symbol:SF3B4 "Uncharacterized protein"... 580 3.7e-97 2
UNIPROTKB|Q15427 - symbol:SF3B4 "Splicing factor 3B subun... 580 3.7e-97 2
UNIPROTKB|F1SDG0 - symbol:SF3B4 "Uncharacterized protein"... 580 3.7e-97 2
MGI|MGI:109580 - symbol:Sf3b4 "splicing factor 3b, subuni... 580 3.7e-97 2
RGD|1309667 - symbol:Sf3b4 "splicing factor 3b, subunit 4... 580 3.7e-97 2
ZFIN|ZDB-GENE-020419-22 - symbol:sf3b4 "splicing factor 3... 575 1.3e-96 2
FB|FBgn0015818 - symbol:Spx "Spliceosomal protein on the ... 458 1.4e-94 3
WB|WBGene00004723 - symbol:sap-49 species:6239 "Caenorhab... 566 3.9e-89 2
UNIPROTKB|Q09442 - symbol:sap-49 "Splicing factor 3B subu... 566 3.9e-89 2
UNIPROTKB|Q5SZ64 - symbol:SF3B4 "Splicing factor 3B subun... 436 5.8e-82 2
TAIR|locus:2046298 - symbol:emb2444 "embryo defective 244... 515 1.2e-81 2
UNIPROTKB|F1MN26 - symbol:F1MN26 "Uncharacterized protein... 459 1.6e-75 2
POMBASE|SPAC31G5.01 - symbol:sap49 "U2 snRNP-associated R... 400 2.3e-58 2
UNIPROTKB|G4NH06 - symbol:MGG_03973 "Splicing factor 3B s... 403 4.2e-57 2
DICTYBASE|DDB_G0267714 - symbol:sf3b4 "splicing factor 3B... 336 1.3e-53 2
GENEDB_PFALCIPARUM|PF14_0194 - symbol:PF14_0194 "spliceos... 354 8.7e-53 2
UNIPROTKB|Q8ILQ0 - symbol:PF14_0194 "Spliceosome-associat... 354 8.7e-53 2
ASPGD|ASPL0000000406 - symbol:AN6501 species:162425 "Emer... 449 1.9e-42 1
CGD|CAL0006311 - symbol:orf19.2261 species:5476 "Candida ... 337 1.4e-30 1
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 235 4.1e-27 3
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 234 1.8e-26 3
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 232 3.1e-26 3
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 225 1.2e-25 2
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 222 1.7e-25 2
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 222 3.1e-25 3
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 218 6.8e-25 3
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 244 7.9e-25 2
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 218 1.1e-24 3
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 217 1.3e-24 3
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 235 1.3e-24 2
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 224 1.4e-24 2
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 206 1.4e-24 3
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 213 2.1e-24 2
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 218 2.3e-24 2
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 215 2.4e-24 2
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 215 7.1e-24 2
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 209 7.2e-24 3
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 221 2.0e-23 2
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 221 2.4e-23 2
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 213 2.3e-22 2
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 205 5.1e-22 2
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 205 6.5e-22 2
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 205 6.5e-22 2
WB|WBGene00003903 - symbol:pab-2 species:6239 "Caenorhabd... 214 1.1e-21 2
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 205 1.3e-21 2
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 202 1.8e-21 3
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 202 3.7e-21 3
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 201 7.0e-21 3
SGD|S000005846 - symbol:HSH49 "U2-snRNP associated splici... 242 1.7e-20 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 250 2.1e-20 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 248 3.4e-20 1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 248 3.8e-20 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 247 4.1e-20 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 247 4.4e-20 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 247 4.4e-20 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 247 4.6e-20 1
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 245 7.2e-20 1
UNIPROTKB|B1ANR1 - symbol:PABPC4 "Polyadenylate-binding p... 235 9.2e-20 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 244 9.2e-20 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 244 9.7e-20 1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 244 1.0e-19 1
UNIPROTKB|E5RJB9 - symbol:PABPC1 "Polyadenylate-binding p... 233 1.5e-19 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 242 1.5e-19 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 242 1.5e-19 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 241 1.7e-19 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 232 1.9e-19 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 232 1.9e-19 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 241 2.0e-19 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 241 2.0e-19 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 241 2.0e-19 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 241 2.0e-19 1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 241 2.1e-19 1
TAIR|locus:2014340 - symbol:UBP1A "oligouridylate-binding... 178 4.1e-19 2
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 180 4.5e-19 2
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 192 5.2e-19 3
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 237 5.3e-19 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 236 6.8e-19 1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 232 1.8e-18 1
SGD|S000004961 - symbol:PUB1 "Poly (A)+ RNA-binding prote... 168 5.8e-18 2
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 227 6.4e-18 1
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 226 8.0e-18 1
RGD|1566367 - symbol:Pabpc1l2a "poly(A) binding protein, ... 215 1.2e-17 1
UNIPROTKB|Q5JQF8 - symbol:PABPC1L2A "Polyadenylate-bindin... 214 1.6e-17 1
TAIR|locus:2018794 - symbol:UBP1B "oligouridylate binding... 171 3.0e-17 2
UNIPROTKB|G3MYW4 - symbol:PABPC1L2A "Uncharacterized prot... 211 3.2e-17 1
UNIPROTKB|G3MZ94 - symbol:PABPC1L2A "Uncharacterized prot... 210 4.1e-17 1
UNIPROTKB|F1RPL9 - symbol:LOC100623240 "Uncharacterized p... 210 4.1e-17 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 169 9.1e-17 2
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 158 1.0e-16 2
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 169 1.1e-16 2
UNIPROTKB|F1NGK7 - symbol:RBM7 "Uncharacterized protein" ... 206 1.1e-16 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 213 1.9e-16 1
UNIPROTKB|E5RH24 - symbol:PABPC1 "Polyadenylate-binding p... 202 2.9e-16 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 165 3.7e-16 2
UNIPROTKB|F5GXV8 - symbol:RBM7 "RNA-binding protein 7" sp... 200 4.7e-16 1
UNIPROTKB|F5GY08 - symbol:RBM7 "RNA-binding protein 7" sp... 200 4.7e-16 1
UNIPROTKB|J3KPD3 - symbol:RBM7 "RNA-binding protein 7" sp... 200 4.7e-16 1
UNIPROTKB|Q9Y580 - symbol:RBM7 "RNA-binding protein 7" sp... 200 4.7e-16 1
WARNING: Descriptions of 731 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 580 (209.2 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
Identities = 107/122 (87%), Positives = 116/122 (95%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IM 155
IM
Sbjct: 132 IM 133
Score = 405 (147.6 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
Identities = 75/84 (89%), Positives = 84/84 (100%)
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
P+IMRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGS
Sbjct: 130 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGS 189
Query: 250 AAERLLAAQNPLSQADRPHQLFAD 273
AAERLLAAQNPLSQADRPHQLFAD
Sbjct: 190 AAERLLAAQNPLSQADRPHQLFAD 213
Score = 197 (74.4 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 38/40 (95%), Positives = 39/40 (97%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEI 111
Score = 114 (45.2 bits), Expect = 0.00061, P = 0.00061
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 580 (209.2 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
Identities = 107/122 (87%), Positives = 116/122 (95%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IM 155
IM
Sbjct: 132 IM 133
Score = 405 (147.6 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
Identities = 75/84 (89%), Positives = 84/84 (100%)
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
P+IMRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGS
Sbjct: 130 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGS 189
Query: 250 AAERLLAAQNPLSQADRPHQLFAD 273
AAERLLAAQNPLSQADRPHQLFAD
Sbjct: 190 AAERLLAAQNPLSQADRPHQLFAD 213
Score = 197 (74.4 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 38/40 (95%), Positives = 39/40 (97%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEI 111
Score = 114 (45.2 bits), Expect = 0.00062, P = 0.00062
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 580 (209.2 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
Identities = 107/122 (87%), Positives = 116/122 (95%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IM 155
IM
Sbjct: 132 IM 133
Score = 405 (147.6 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
Identities = 75/84 (89%), Positives = 84/84 (100%)
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
P+IMRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGS
Sbjct: 130 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGS 189
Query: 250 AAERLLAAQNPLSQADRPHQLFAD 273
AAERLLAAQNPLSQADRPHQLFAD
Sbjct: 190 AAERLLAAQNPLSQADRPHQLFAD 213
Score = 197 (74.4 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 38/40 (95%), Positives = 39/40 (97%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEI 111
Score = 114 (45.2 bits), Expect = 0.00062, P = 0.00062
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 580 (209.2 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
Identities = 107/122 (87%), Positives = 116/122 (95%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IM 155
IM
Sbjct: 132 IM 133
Score = 405 (147.6 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
Identities = 75/84 (89%), Positives = 84/84 (100%)
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
P+IMRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGS
Sbjct: 130 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGS 189
Query: 250 AAERLLAAQNPLSQADRPHQLFAD 273
AAERLLAAQNPLSQADRPHQLFAD
Sbjct: 190 AAERLLAAQNPLSQADRPHQLFAD 213
Score = 197 (74.4 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 38/40 (95%), Positives = 39/40 (97%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEI 111
Score = 114 (45.2 bits), Expect = 0.00062, P = 0.00062
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 580 (209.2 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
Identities = 107/122 (87%), Positives = 116/122 (95%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IM 155
IM
Sbjct: 132 IM 133
Score = 405 (147.6 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
Identities = 75/84 (89%), Positives = 84/84 (100%)
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
P+IMRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGS
Sbjct: 130 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGS 189
Query: 250 AAERLLAAQNPLSQADRPHQLFAD 273
AAERLLAAQNPLSQADRPHQLFAD
Sbjct: 190 AAERLLAAQNPLSQADRPHQLFAD 213
Score = 197 (74.4 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 38/40 (95%), Positives = 39/40 (97%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEI 111
Score = 114 (45.2 bits), Expect = 0.00062, P = 0.00062
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 580 (209.2 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
Identities = 107/122 (87%), Positives = 116/122 (95%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IM 155
IM
Sbjct: 132 IM 133
Score = 405 (147.6 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
Identities = 75/84 (89%), Positives = 84/84 (100%)
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
P+IMRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGS
Sbjct: 130 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGS 189
Query: 250 AAERLLAAQNPLSQADRPHQLFAD 273
AAERLLAAQNPLSQADRPHQLFAD
Sbjct: 190 AAERLLAAQNPLSQADRPHQLFAD 213
Score = 197 (74.4 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 38/40 (95%), Positives = 39/40 (97%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEI 111
Score = 114 (45.2 bits), Expect = 0.00062, P = 0.00062
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 580 (209.2 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
Identities = 107/122 (87%), Positives = 116/122 (95%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IM 155
IM
Sbjct: 132 IM 133
Score = 405 (147.6 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
Identities = 75/84 (89%), Positives = 84/84 (100%)
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
P+IMRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGS
Sbjct: 130 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGS 189
Query: 250 AAERLLAAQNPLSQADRPHQLFAD 273
AAERLLAAQNPLSQADRPHQLFAD
Sbjct: 190 AAERLLAAQNPLSQADRPHQLFAD 213
Score = 197 (74.4 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 38/40 (95%), Positives = 39/40 (97%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEI 111
Score = 114 (45.2 bits), Expect = 0.00062, P = 0.00062
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 575 (207.5 bits), Expect = 1.3e-96, Sum P(2) = 1.3e-96
Identities = 106/122 (86%), Positives = 115/122 (94%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADYAI
Sbjct: 12 DAAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPE+DEKLLYDTFSAFGVILQTPK
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 154 IM 155
IM
Sbjct: 132 IM 133
Score = 405 (147.6 bits), Expect = 1.3e-96, Sum P(2) = 1.3e-96
Identities = 75/84 (89%), Positives = 84/84 (100%)
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
P+IMRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGS
Sbjct: 130 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGS 189
Query: 250 AAERLLAAQNPLSQADRPHQLFAD 273
AAERLLAAQNPLSQADRPHQLFAD
Sbjct: 190 AAERLLAAQNPLSQADRPHQLFAD 213
Score = 197 (74.4 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 38/40 (95%), Positives = 39/40 (97%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEI 111
Score = 114 (45.2 bits), Expect = 0.00057, P = 0.00057
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 97 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 157 AAIEAMNGQYLCNRPITVSYA 177
>FB|FBgn0015818 [details] [associations]
symbol:Spx "Spliceosomal protein on the X" species:7227
"Drosophila melanogaster" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007052 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0005686
eggNOG:COG0724 HSSP:P11940 EMBL:X97197 ProteinModelPortal:Q24534
SMR:Q24534 IntAct:Q24534 STRING:Q24534 PRIDE:Q24534
FlyBase:FBgn0015818 InParanoid:Q24534 OrthoDB:EOG41894B
ArrayExpress:Q24534 Bgee:Q24534 Uniprot:Q24534
Length = 366
Score = 458 (166.3 bits), Expect = 1.4e-94, Sum P(3) = 1.4e-94
Identities = 87/94 (92%), Positives = 90/94 (95%)
Query: 62 VNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVG 121
VNVHMPKDRVTQ HQGYGF+EF+ EEDADY IKIMNMIKLYGKPIRVNKAS+HQKNLDVG
Sbjct: 59 VNVHMPKDRVTQMHQGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKASAHQKNLDVG 118
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
ANIFIGNLD EVDEKLLYDTFSAFGVILQTPKIM
Sbjct: 119 ANIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIM 152
Score = 380 (138.8 bits), Expect = 1.4e-94, Sum P(3) = 1.4e-94
Identities = 71/84 (84%), Positives = 79/84 (94%)
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
P+IMRDP+TG SK FAFIN+ASFEASDA++DAM+GQYLCNRPISVSYAFKKD KG+RHGS
Sbjct: 149 PKIMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGS 208
Query: 250 AAERLLAAQNPLSQADRPHQLFAD 273
AAERLLAAQNP + ADRPHQLFAD
Sbjct: 209 AAERLLAAQNPSTHADRPHQLFAD 232
Score = 192 (72.6 bits), Expect = 1.2e-66, Sum P(3) = 1.2e-66
Identities = 37/40 (92%), Positives = 39/40 (97%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
KIMNMIKLYGKPIRVNKAS+HQKNLDVGANIFIGNLD E+
Sbjct: 91 KIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDVEV 130
Score = 136 (52.9 bits), Expect = 1.4e-94, Sum P(3) = 1.4e-94
Identities = 25/28 (89%), Positives = 27/28 (96%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPV 61
DATIY GGLDDKVSETL+WELFVQ+GPV
Sbjct: 12 DATIYAGGLDDKVSETLLWELFVQAGPV 39
Score = 54 (24.1 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 194 RDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
+D T +G+ F+ + S E +D I M+ L +PI V+ A
Sbjct: 65 KDRVTQMHQGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKA 108
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 566 (204.3 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
Identities = 103/122 (84%), Positives = 118/122 (96%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLD+KVSE+++WEL VQ+GPVV+V+MPKDRVT HQG+GF+EFMGEEDADYAI
Sbjct: 12 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+NMIKLYGKPI+VNKAS+H+KN+DVGANIF+GNLDPEVDEKLLYDTFSAFGVILQ PK
Sbjct: 72 KILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131
Query: 154 IM 155
IM
Sbjct: 132 IM 133
Score = 343 (125.8 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
Identities = 62/84 (73%), Positives = 77/84 (91%)
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
P+IMRD D+G SKGFAFIN+ASFEASD +++AM+GQ+LCNR I+VSYAFK+DSKG+RHG+
Sbjct: 130 PKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGT 189
Query: 250 AAERLLAAQNPLSQADRPHQLFAD 273
AAER+LAAQNPL DRPHQ+F+D
Sbjct: 190 AAERMLAAQNPLFPKDRPHQVFSD 213
Score = 189 (71.6 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 33/40 (82%), Positives = 40/40 (100%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
KI+NMIKLYGKPI+VNKAS+H+KN+DVGANIF+GNLDPE+
Sbjct: 72 KILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEV 111
Score = 112 (44.5 bits), Expect = 0.00091, P = 0.00091
Identities = 38/130 (29%), Positives = 60/130 (46%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I+VG LD +V E L+++ F G ++ V + +D + T +G+ FI F E +D
Sbjct: 97 DVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASD 156
Query: 91 YAIKIMNMIKLYGKPIRVN---KASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFS--AF 145
A++ MN L + I V+ K S + A + +P + + FS
Sbjct: 157 TALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSDVPL 216
Query: 146 GVILQTPKIM 155
GV TP M
Sbjct: 217 GVPANTPLAM 226
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 566 (204.3 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
Identities = 103/122 (84%), Positives = 118/122 (96%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DATIYVGGLD+KVSE+++WEL VQ+GPVV+V+MPKDRVT HQG+GF+EFMGEEDADYAI
Sbjct: 12 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAI 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
KI+NMIKLYGKPI+VNKAS+H+KN+DVGANIF+GNLDPEVDEKLLYDTFSAFGVILQ PK
Sbjct: 72 KILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131
Query: 154 IM 155
IM
Sbjct: 132 IM 133
Score = 343 (125.8 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
Identities = 62/84 (73%), Positives = 77/84 (91%)
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
P+IMRD D+G SKGFAFIN+ASFEASD +++AM+GQ+LCNR I+VSYAFK+DSKG+RHG+
Sbjct: 130 PKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGT 189
Query: 250 AAERLLAAQNPLSQADRPHQLFAD 273
AAER+LAAQNPL DRPHQ+F+D
Sbjct: 190 AAERMLAAQNPLFPKDRPHQVFSD 213
Score = 189 (71.6 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 33/40 (82%), Positives = 40/40 (100%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
KI+NMIKLYGKPI+VNKAS+H+KN+DVGANIF+GNLDPE+
Sbjct: 72 KILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEV 111
Score = 112 (44.5 bits), Expect = 0.00091, P = 0.00091
Identities = 38/130 (29%), Positives = 60/130 (46%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I+VG LD +V E L+++ F G ++ V + +D + T +G+ FI F E +D
Sbjct: 97 DVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASD 156
Query: 91 YAIKIMNMIKLYGKPIRVN---KASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFS--AF 145
A++ MN L + I V+ K S + A + +P + + FS
Sbjct: 157 TALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSDVPL 216
Query: 146 GVILQTPKIM 155
GV TP M
Sbjct: 217 GVPANTPLAM 226
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 436 (158.5 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 82/90 (91%), Positives = 86/90 (95%)
Query: 66 MPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIF 125
MPKDRVT HQGYGF+EF+ EEDADYAIKIMNMIKLYGKPIRVNKAS+H KNLDVGANIF
Sbjct: 1 MPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIF 60
Query: 126 IGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
IGNLDPE+DEKLLYDTFSAFGVILQTPKIM
Sbjct: 61 IGNLDPEIDEKLLYDTFSAFGVILQTPKIM 90
Score = 405 (147.6 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 75/84 (89%), Positives = 84/84 (100%)
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
P+IMRDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSKG+RHGS
Sbjct: 87 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGS 146
Query: 250 AAERLLAAQNPLSQADRPHQLFAD 273
AAERLLAAQNPLSQADRPHQLFAD
Sbjct: 147 AAERLLAAQNPLSQADRPHQLFAD 170
Score = 197 (74.4 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 38/40 (95%), Positives = 39/40 (97%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
KIMNMIKLYGKPIRVNKAS+H KNLDVGANIFIGNLDPEI
Sbjct: 29 KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEI 68
Score = 114 (45.2 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDAD 90
D A I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D
Sbjct: 54 DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 113
Query: 91 YAIKIMNMIKLYGKPIRVNKA 111
AI+ MN L +PI V+ A
Sbjct: 114 AAIEAMNGQYLCNRPITVSYA 134
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 515 (186.3 bits), Expect = 1.2e-81, Sum P(2) = 1.2e-81
Identities = 95/122 (77%), Positives = 110/122 (90%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DAT+YVGGLD ++SE L+WELFVQ+GPVVNV++PKDRVT HQ YGFIE+ EEDADYAI
Sbjct: 24 DATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAI 83
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K++NMIKL+GKPIRVNKAS +K+LDVGAN+FIGNLDP+VDEKLLYDTFSAFGVI PK
Sbjct: 84 KVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPK 143
Query: 154 IM 155
IM
Sbjct: 144 IM 145
Score = 323 (118.8 bits), Expect = 1.2e-81, Sum P(2) = 1.2e-81
Identities = 60/84 (71%), Positives = 73/84 (86%)
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
+P+IMRDPDTGNS+GF FI+Y SFEASDA+I++M GQYL NR I+VSYA+KKD+KG+RHG
Sbjct: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERHG 200
Query: 249 SAAERLLAAQNPLSQADRPHQLFA 272
+ AERLLAA NP +Q RPH LFA
Sbjct: 201 TPAERLLAATNPTAQKSRPHTLFA 224
Score = 168 (64.2 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 30/40 (75%), Positives = 38/40 (95%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
K++NMIKL+GKPIRVNKAS +K+LDVGAN+FIGNLDP++
Sbjct: 84 KVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDV 123
Score = 72 (30.4 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 106 IRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT--PK--IMNMIKLY 161
+ N H + A +++G LD ++ E+LL++ F G ++ PK + N+ + Y
Sbjct: 9 VGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNY 68
Query: 162 G 162
G
Sbjct: 69 G 69
Score = 40 (19.1 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 165 IRVNKASSHQKNLDVGANIFIGNLDPEIMRD 195
+ N H + A +++G LD ++ +
Sbjct: 9 VGANLLGQHSAERNQDATVYVGGLDAQLSEE 39
>UNIPROTKB|F1MN26 [details] [associations]
symbol:F1MN26 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 EMBL:DAAA02057528
IPI:IPI00686039 Ensembl:ENSBTAT00000013961 OMA:ITVSHAF
Uniprot:F1MN26
Length = 398
Score = 459 (166.6 bits), Expect = 1.6e-75, Sum P(2) = 1.6e-75
Identities = 89/123 (72%), Positives = 103/123 (83%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQ-THQGYGFIEFMGEEDADYA 92
DA +YVGG D+KV E L+WELF+Q+G VVN +M KD VT HQGYGF+EF+ ++ADYA
Sbjct: 12 DAAVYVGGPDEKVREPLLWELFLQAGLVVNTNMAKDSVTVGQHQGYGFVEFLSGKNADYA 71
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
IKIMNMIK YGKP RVNKAS+H K LDVGANIFIGNLDP++ KLLYDTFS FGVILQTP
Sbjct: 72 IKIMNMIKRYGKPTRVNKASAHSKKLDVGANIFIGNLDPQIG-KLLYDTFSTFGVILQTP 130
Query: 153 KIM 155
+IM
Sbjct: 131 RIM 133
Score = 321 (118.1 bits), Expect = 1.6e-75, Sum P(2) = 1.6e-75
Identities = 61/84 (72%), Positives = 72/84 (85%)
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
P IMR+PDTGNSKG+AFI++ S + DA+I AM+ QYLCN I+VS+AFKKDSKG+RHGS
Sbjct: 130 PRIMRNPDTGNSKGYAFIHFVSCDVVDAAIKAMNRQYLCNHLITVSHAFKKDSKGERHGS 189
Query: 250 AAERLLAAQNPLSQADRPHQLFAD 273
E+LLAAQNPLSQADRP QLFAD
Sbjct: 190 GTEQLLAAQNPLSQADRPRQLFAD 213
Score = 177 (67.4 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 34/40 (85%), Positives = 36/40 (90%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
KIMNMIK YGKP RVNKAS+H K LDVGANIFIGNLDP+I
Sbjct: 73 KIMNMIKRYGKPTRVNKASAHSKKLDVGANIFIGNLDPQI 112
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 400 (145.9 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 69/127 (54%), Positives = 104/127 (81%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E + DATIY+G LD+KV++++++EL +Q+GPVVN+H+P+DRV +H G+GF EF+ E+D
Sbjct: 5 EDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQD 64
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQK-NLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
+YA +I+N +KL+GKPIRVN+AS + N +GAN+F+GNLDP VDE++LYDTFSA G
Sbjct: 65 VEYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQ 124
Query: 148 ILQTPKI 154
+++ P++
Sbjct: 125 LVKAPQV 131
Score = 217 (81.4 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 39/68 (57%), Positives = 55/68 (80%)
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
P++ RD + G SKG+ F++Y SFE +DA+I+AM+ Q+L N+PI+VSYAFK++ KG+RHG
Sbjct: 129 PQVARD-ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHGD 187
Query: 250 AAERLLAA 257
AER LAA
Sbjct: 188 IAERKLAA 195
Score = 124 (48.7 bits), Expect = 3.3e-29, Sum P(2) = 3.3e-29
Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQK-NLDVGANIFIGNLDP 190
+I+N +KL+GKPIRVN+AS + N +GAN+F+GNLDP
Sbjct: 70 QILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDP 108
Score = 112 (44.5 bits), Expect = 0.00071, P = 0.00071
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNV-HMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
A ++VG LD V E ++++ F G +V + +D ++ +GYGF+ + E AD AI
Sbjct: 99 ANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRS-KGYGFVSYDSFETADAAI 157
Query: 94 KIMNMIKLYGKPIRVNKA 111
+ MN L KPI V+ A
Sbjct: 158 EAMNNQFLMNKPITVSYA 175
Score = 39 (18.8 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 175 KNLDVGANIFIGNLDPEI 192
+N D A I++GNLD ++
Sbjct: 7 RNQD--ATIYLGNLDEKV 22
>UNIPROTKB|G4NH06 [details] [associations]
symbol:MGG_03973 "Splicing factor 3B subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
Uniprot:G4NH06
Length = 407
Score = 403 (146.9 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 74/134 (55%), Positives = 101/134 (75%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+AT+YVG LD++ E LMWE+ Q GPVVN+HMP DRV++THQGYGF+EF E ADYA
Sbjct: 11 EATVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADYAA 70
Query: 94 KIMNMIKLYGKPIRVNKASSH-QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+ +N I+++GK IRVNKAS+ QK ++GA +F+ NLDP+VDEK+L+DTFS FG ++ P
Sbjct: 71 RALNGIRVFGKVIRVNKASADKQKTAEIGAELFVNNLDPQVDEKILFDTFSRFGQLVTPP 130
Query: 153 KIM----NMIKLYG 162
++ N+ K YG
Sbjct: 131 NVVRDANNISKGYG 144
Score = 202 (76.2 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 38/69 (55%), Positives = 52/69 (75%)
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
P ++RD + SKG+ F+N+ SFEASD + D M+GQYL ++ I+V YA+KKD KG+RHG
Sbjct: 130 PNVVRDANN-ISKGYGFVNFDSFEASDTARDTMNGQYLLSKQITVEYAYKKDGKGERHGD 188
Query: 250 AAERLLAAQ 258
AER LAA+
Sbjct: 189 EAERKLAAE 197
Score = 111 (44.1 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 20/41 (48%), Positives = 32/41 (78%)
Query: 153 KIMNMIKLYGKPIRVNKASSH-QKNLDVGANIFIGNLDPEI 192
+ +N I+++GK IRVNKAS+ QK ++GA +F+ NLDP++
Sbjct: 71 RALNGIRVFGKVIRVNKASADKQKTAEIGAELFVNNLDPQV 111
>DICTYBASE|DDB_G0267714 [details] [associations]
symbol:sf3b4 "splicing factor 3B subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0267714 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AAFI02000003
GO:GO:0005681 GO:GO:0003723 HSSP:Q15427 eggNOG:NOG282907 KO:K12831
RefSeq:XP_647248.1 ProteinModelPortal:Q55GD6 SMR:Q55GD6
STRING:Q55GD6 EnsemblProtists:DDB0233172 GeneID:8616053
KEGG:ddi:DDB_G0267714 OMA:ERNHEAC Uniprot:Q55GD6
Length = 359
Score = 336 (123.3 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
Identities = 58/122 (47%), Positives = 90/122 (73%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+A + + LD V+E+L+ ELF+Q+ PVV V +PKD++TQ H G ++EF DA+YA+
Sbjct: 12 EACLLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYAL 71
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
K+M ++L+ K I++ K ++ +D+GAN+FIGNLD +VDE++L+DTFS FG I+ TPK
Sbjct: 72 KVMKFVRLFNKEIKIKK--ENKDKVDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPK 129
Query: 154 IM 155
+M
Sbjct: 130 VM 131
Score = 236 (88.1 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
Identities = 47/80 (58%), Positives = 63/80 (78%)
Query: 190 PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
P++MRD + G SKGFAFIN+ SFEASDA+I+AM+ Q+LCN+PISV+YA KKDS +RHGS
Sbjct: 128 PKVMRD-ENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISVTYARKKDSN-ERHGS 185
Query: 250 AAERLLAAQNPLSQADRPHQ 269
+AER++AA ++ Q
Sbjct: 186 SAERIIAASRNTGYLNQQQQ 205
Score = 97 (39.2 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 16/40 (40%), Positives = 29/40 (72%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
K+M ++L+ K I++ K ++ +D+GAN+FIGNLD ++
Sbjct: 72 KVMKFVRLFNKEIKIKK--ENKDKVDIGANLFIGNLDADV 109
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 354 (129.7 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 64/124 (51%), Positives = 93/124 (75%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ +AT+Y+ LD +V E ++ ELF+Q G V NVH+P+D++ H GYGF+E+ E + +Y
Sbjct: 17 NNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECEY 76
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
A I+NM KL+GK +R NKA+ +++ DVGAN+FIGNLD EVDEK+L+D FS+FG I+ T
Sbjct: 77 AANILNMTKLFGKALRCNKATQDKRSFDVGANLFIGNLDDEVDEKMLFDIFSSFGQIM-T 135
Query: 152 PKIM 155
K+M
Sbjct: 136 VKVM 139
Score = 210 (79.0 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 38/72 (52%), Positives = 56/72 (77%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA 250
++MR+ D SKG FI+Y +FE+SD +I+ M+ Q++CN+ + +SYAFKKDSKG+RHG+A
Sbjct: 137 KVMRNEDD-TSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKGERHGTA 195
Query: 251 AERLLAAQNPLS 262
AER +AA L+
Sbjct: 196 AERFIAANKALN 207
Score = 130 (50.8 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
I+NM KL+GK +R NKA+ +++ DVGAN+FIGNLD E+
Sbjct: 80 ILNMTKLFGKALRCNKATQDKRSFDVGANLFIGNLDDEV 118
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 25/82 (30%), Positives = 48/82 (58%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
S D A +++G LDD+V E +++++F G ++ V + ++ T +G+GFI + E +
Sbjct: 102 SFDVGANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNE-DDTSKGHGFISYDNFESS 160
Query: 90 DYAIKIMNMIKLYGKPIRVNKA 111
D AI+ MN + K + ++ A
Sbjct: 161 DLAIENMNNQFICNKKVHISYA 182
Score = 64 (27.6 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 109 NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFG 146
N+ SH + A ++I NLD +VDE++L + F G
Sbjct: 7 NQEISHIYERNNEATLYIANLDAQVDEEILCELFMQCG 44
Score = 38 (18.4 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 168 NKASSHQKNLDVGANIFIGNLDPEI 192
N+ SH + A ++I NLD ++
Sbjct: 7 NQEISHIYERNNEATLYIANLDAQV 31
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 354 (129.7 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 64/124 (51%), Positives = 93/124 (75%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ +AT+Y+ LD +V E ++ ELF+Q G V NVH+P+D++ H GYGF+E+ E + +Y
Sbjct: 17 NNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECEY 76
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
A I+NM KL+GK +R NKA+ +++ DVGAN+FIGNLD EVDEK+L+D FS+FG I+ T
Sbjct: 77 AANILNMTKLFGKALRCNKATQDKRSFDVGANLFIGNLDDEVDEKMLFDIFSSFGQIM-T 135
Query: 152 PKIM 155
K+M
Sbjct: 136 VKVM 139
Score = 210 (79.0 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 38/72 (52%), Positives = 56/72 (77%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA 250
++MR+ D SKG FI+Y +FE+SD +I+ M+ Q++CN+ + +SYAFKKDSKG+RHG+A
Sbjct: 137 KVMRNEDD-TSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKGERHGTA 195
Query: 251 AERLLAAQNPLS 262
AER +AA L+
Sbjct: 196 AERFIAANKALN 207
Score = 130 (50.8 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 154 IMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
I+NM KL+GK +R NKA+ +++ DVGAN+FIGNLD E+
Sbjct: 80 ILNMTKLFGKALRCNKATQDKRSFDVGANLFIGNLDDEV 118
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 25/82 (30%), Positives = 48/82 (58%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
S D A +++G LDD+V E +++++F G ++ V + ++ T +G+GFI + E +
Sbjct: 102 SFDVGANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNE-DDTSKGHGFISYDNFESS 160
Query: 90 DYAIKIMNMIKLYGKPIRVNKA 111
D AI+ MN + K + ++ A
Sbjct: 161 DLAIENMNNQFICNKKVHISYA 182
Score = 64 (27.6 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 109 NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFG 146
N+ SH + A ++I NLD +VDE++L + F G
Sbjct: 7 NQEISHIYERNNEATLYIANLDAQVDEEILCELFMQCG 44
Score = 38 (18.4 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 168 NKASSHQKNLDVGANIFIGNLDPEI 192
N+ SH + A ++I NLD ++
Sbjct: 7 NQEISHIYERNNEATLYIANLDAQV 31
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 82/136 (60%), Positives = 112/136 (82%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +AT+Y+G LD++VS++L+WEL +Q+G +VNVH+PKDRVTQ+HQGYGF+EF EEDA+Y
Sbjct: 10 DKEATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEY 69
Query: 92 AIKIMNMIKLYGKPIRVNKASSH-QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A +IMN I+LYGKPIRVNKAS+ QK++++GA +F+GNLDP V E++LYDTFS FG ++
Sbjct: 70 ASRIMNGIRLYGKPIRVNKASADKQKSVEIGAELFVGNLDPMVTEQVLYDTFSRFGNLVN 129
Query: 151 TPKIM----NMIKLYG 162
PK+ N+ K YG
Sbjct: 130 LPKVARDDSNLSKGYG 145
Score = 219 (82.2 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 43/75 (57%), Positives = 58/75 (77%)
Query: 186 GNLD--PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
GNL P++ RD D+ SKG+ F+++A FE+SDA+I M+GQYL N+ +SV YA+KKD K
Sbjct: 125 GNLVNLPKVARD-DSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYAYKKDGK 183
Query: 244 GDRHGSAAERLLAAQ 258
G+RHG AER+LAAQ
Sbjct: 184 GERHGDQAERMLAAQ 198
Score = 144 (55.7 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 32/75 (42%), Positives = 48/75 (64%)
Query: 153 KIMNMIKLYGKPIRVNKASSH-QKNLDVGANIFIGNLDPEIMRDP--DTGNSKGFAFINY 209
+IMN I+LYGKPIRVNKAS+ QK++++GA +F+GNLDP + DT + G +N
Sbjct: 72 RIMNGIRLYGKPIRVNKASADKQKSVEIGAELFVGNLDPMVTEQVLYDTFSRFG-NLVNL 130
Query: 210 ASFEASDASIDAMHG 224
D+++ +G
Sbjct: 131 PKVARDDSNLSKGYG 145
Score = 40 (19.1 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 178 DVGANIFIGNLDPEI 192
D A ++IGNLD +
Sbjct: 10 DKEATVYIGNLDERV 24
>CGD|CAL0006311 [details] [associations]
symbol:orf19.2261 species:5476 "Candida albicans" [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0006311 GO:GO:0000166
EMBL:AACQ01000095 EMBL:AACQ01000096 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG282907 KO:K12831 RefSeq:XP_714789.1
RefSeq:XP_714851.1 ProteinModelPortal:Q59Z39 STRING:Q59Z39
GeneID:3643500 GeneID:3643580 KEGG:cal:CaO19.2261
KEGG:cal:CaO19.9801 Uniprot:Q59Z39
Length = 259
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 86/227 (37%), Positives = 124/227 (54%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA++Y G +D +V+E LM+ELF+Q GPV +++MPKDR+ +THQGYGF+EF DA Y +
Sbjct: 16 DASLYFGNIDPQVTELLMYELFIQFGPVKSINMPKDRILKTHQGYGFVEFKNSADAKYTM 75
Query: 94 KIMNMIKLYGKPIRVNKASSH-QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+I+ I+LYGK +++ + + Q + + N IG V L+ + G L
Sbjct: 76 EILRGIRLYGKALKLKRIDAKSQSSTNNPNNQTIGTF---VQSDLINPNYIDVGAKLF-- 130
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
I N+ L + ++ S G I N P I RD + G+S G+ F+ Y F
Sbjct: 131 -INNLNPLVDESFLMDTFSKF------GT--LIRN--PIIRRDSE-GHSLGYGFLTYDDF 178
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKK---DSKGDRHGSAAERLLA 256
E+SD I M+ L N I++SYAFK D K RHG ER LA
Sbjct: 179 ESSDLCIQKMNNTILMNNKITISYAFKDLSVDGKKSRHGDQVERKLA 225
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 235 (87.8 bits), Expect = 4.1e-27, Sum P(3) = 4.1e-27
Identities = 47/117 (40%), Positives = 73/117 (62%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF GPV ++ + +D VT+ GY ++ F ED + A+
Sbjct: 80 ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
+N + G+P R+ ++ + + G N+FI NLDP +D K L+DTFSAFG IL
Sbjct: 140 ELNYTLIKGRPCRIMWSQRDPSLRKMGTG-NVFIKNLDPAIDNKALHDTFSAFGKIL 195
Score = 125 (49.1 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 34/123 (27%), Positives = 59/123 (47%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + + + F G +++ + D + +GYGF+ F E A+ A
Sbjct: 166 GTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNA-KGYGFVHFDSVESANAA 224
Query: 93 IKIMNMIKLYGKPIRV-NKASSHQKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ +N + L K + V + S ++ V A N++I NLD E+ E+ D F F
Sbjct: 225 IEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQF 284
Query: 146 GVI 148
G I
Sbjct: 285 GEI 287
Score = 91 (37.1 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 38/135 (28%), Positives = 62/135 (45%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQ-------THQGYGFIEFMGEE-- 87
+Y+ LD +++E +LF Q G + ++ + KD+ + + + + +E
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 88 DADYAIKIMNMIKLYGKPIR---VNKASSHQK----NLDVGANIFIGNLDPEVDEKLLYD 140
D +Y K + + + K R + K K N G N+FI NL EVD++ L
Sbjct: 323 DKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKA 382
Query: 141 TFSAFGVILQTPKIM 155
FSAFG I KIM
Sbjct: 383 EFSAFGTITSA-KIM 396
Score = 82 (33.9 bits), Expect = 4.1e-27, Sum P(3) = 4.1e-27
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
+IM D + G SKGF F+ Y + E ++ ++ M+ + L +P+ V+ A +K+
Sbjct: 394 KIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKE 443
Score = 76 (31.8 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
Identities = 12/40 (30%), Positives = 29/40 (72%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSY 236
+ GN+KG+ F+++ S E+++A+I+ ++G L ++ + V +
Sbjct: 203 ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH 242
Score = 71 (30.1 bits), Expect = 6.4e-05, Sum P(3) = 6.4e-05
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 105 PIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
P + ++ A++++G LDP V E +L++ F++ G +
Sbjct: 63 PTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPV 106
Score = 67 (28.6 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 20/88 (22%), Positives = 44/88 (50%)
Query: 165 IRVNKASSHQKNLDVG------ANIF--IGNLDP-EIMRDPDTGNSKGFAFINYASFEAS 215
++ N + + KNLD +++F G + +++D + +GF F+NYA+ E +
Sbjct: 256 LKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGFVNYANHECA 314
Query: 216 DASIDAMHGQYLCNRPISVSYAFKKDSK 243
++D ++ + + + V A KK +
Sbjct: 315 QKAVDELNDKEYKGKKLYVGRAQKKHER 342
Score = 55 (24.4 bits), Expect = 6.4e-05, Sum P(3) = 6.4e-05
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 155 MNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI 192
+N + G+P R+ ++ + + G N+FI NLDP I
Sbjct: 141 LNYTLIKGRPCRIMWSQRDPSLRKMGTG-NVFIKNLDPAI 179
Score = 40 (19.1 bits), Expect = 4.1e-27, Sum P(3) = 4.1e-27
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 166 RVNKASSHQKNLDVGANIFIGNLDPEI 192
R + + N G N+FI NL E+
Sbjct: 349 RYEQMKLEKMNKYQGVNLFIKNLQDEV 375
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 234 (87.4 bits), Expect = 1.8e-26, Sum P(3) = 1.8e-26
Identities = 48/117 (41%), Positives = 73/117 (62%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNIL 126
Score = 133 (51.9 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 45/186 (24%), Positives = 87/186 (46%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ +++ LD + +++ F G +++ + D +GY F+ F ++
Sbjct: 95 KSGVGN--VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDA 150
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGNLDPEVDEKLLYDT 141
AD AI+ MN + L + + V + S ++ ++GA N++I N ++D++ L +
Sbjct: 151 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEL 210
Query: 142 FSAFGVILQTPKIMN----MIKLYG-----KPIRVNKASSHQKNLDV-GANIFIGNLDPE 191
FS +G L K+M K +G K NKA D+ G +F+G +
Sbjct: 211 FSKYGKTLSV-KVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKK 269
Query: 192 IMRDPD 197
+ R +
Sbjct: 270 VERQAE 275
Score = 101 (40.6 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 29/108 (26%), Positives = 56/108 (51%)
Query: 17 QSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQ 76
+S + + E G ++ + +Y+ D + + + ELF + G ++V + D T +
Sbjct: 174 KSRKEREAELGAKAKEF-TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSK 231
Query: 77 GYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 124
G+GF+ F EDA+ A++ MN + GK + V +A QK ++ A +
Sbjct: 232 GFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRA---QKKVERQAEL 276
Score = 89 (36.4 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
L ++M DP TG SKGF F+++ E ++ +++ M+G+ + + + V A KK
Sbjct: 218 LSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKK 269
Score = 83 (34.3 bits), Expect = 6.1e-25, Sum P(2) = 6.1e-25
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS-YAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + +A+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 133 DENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Score = 79 (32.9 bits), Expect = 1.8e-26, Sum P(3) = 1.8e-26
Identities = 14/47 (29%), Positives = 31/47 (65%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 69 (29.3 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N++I NLD +D++ L FS FG I K+M
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSA-KVM 326
Score = 37 (18.1 bits), Expect = 1.8e-26, Sum P(3) = 1.8e-26
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 180 GANIFIGNLDPEI 192
G N++I NLD I
Sbjct: 293 GVNLYIKNLDDTI 305
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 232 (86.7 bits), Expect = 3.1e-26, Sum P(3) = 3.1e-26
Identities = 47/117 (40%), Positives = 73/117 (62%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L ++E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 72 TMNFDVVKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNIL 127
Score = 122 (48.0 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 42/186 (22%), Positives = 84/186 (45%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ +++ LD + +++ F G +++ + D +GY F+ F ++
Sbjct: 96 KSGVGN--VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDA 151
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGNLDPEVDEKLLYDT 141
AD AI+ MN + L + + V + S ++ ++GA N++I N ++D++ L +
Sbjct: 152 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKEL 211
Query: 142 FSAFGVILQTPKIMNM---------IKLYGKPIRVNKASSHQKNLDV-GANIFIGNLDPE 191
F +G L K+M Y K NKA ++ G +F+G +
Sbjct: 212 FDKYGKTLSV-KVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKK 270
Query: 192 IMRDPD 197
+ R +
Sbjct: 271 MERQAE 276
Score = 106 (42.4 bits), Expect = 6.9e-10, Sum P(3) = 6.9e-10
Identities = 29/108 (26%), Positives = 57/108 (52%)
Query: 17 QSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQ 76
+S + + E G ++ + +Y+ D + + + ELF + G ++V + D T +
Sbjct: 175 KSRKEREAEMGAKAKEF-TNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSR 232
Query: 77 GYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 124
G+GF+ + EDA+ A++ MN +L GK + V +A QK ++ A +
Sbjct: 233 GFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRA---QKKMERQAEL 277
Score = 92 (37.4 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
L ++M DP TG S+GF F++Y E ++ +++ M+G L + + V A KK
Sbjct: 219 LSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKK 270
Score = 84 (34.6 bits), Expect = 8.2e-25, Sum P(2) = 8.2e-25
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS-YAFKKDSKGDRHGSAAE 252
D SKG+AF+++ + +A+D +I+ M+G L +R + V + +K+ + + A E
Sbjct: 134 DENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKE 190
Score = 79 (32.9 bits), Expect = 3.1e-26, Sum P(3) = 3.1e-26
Identities = 14/47 (29%), Positives = 31/47 (65%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 329 EEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 375
Score = 69 (29.3 bits), Expect = 6.9e-10, Sum P(3) = 6.9e-10
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N++I NLD +D++ L FS FG I K+M
Sbjct: 294 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSA-KVM 327
Score = 37 (18.1 bits), Expect = 3.1e-26, Sum P(3) = 3.1e-26
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 180 GANIFIGNLDPEI 192
G N++I NLD I
Sbjct: 294 GVNLYIKNLDDTI 306
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 225 (84.3 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 47/117 (40%), Positives = 72/117 (61%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
MN + G+PIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG-NVFIKNLDESIDNKALYDTFSAFGNIL 126
Score = 149 (57.5 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 49/182 (26%), Positives = 85/182 (46%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ +++ LD+ + +++ F G +++ + D +GYGF+ F +E
Sbjct: 95 KSGVGN--VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEA 150
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGNLDPEVDEKLLYDT 141
A+ AI+ MN + L + + V S ++ L+ GA N++I N ++D+K L +
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210
Query: 142 FSAFGVILQTPKIMNMIKL--------YGKPIRVNKASSHQKNLDV-GANIFIGNLDPEI 192
FSAFG L +M+ YG KA S +V G I++G I
Sbjct: 211 FSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI 270
Query: 193 MR 194
R
Sbjct: 271 ER 272
Score = 99 (39.9 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 186 GN-LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK-DSK 243
GN L ++M D DTG S+GF F+NY + E + ++ M+G+ + R I V A K+ + +
Sbjct: 215 GNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQ 273
Query: 244 GD 245
G+
Sbjct: 274 GE 275
Score = 80 (33.2 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 14/45 (31%), Positives = 30/45 (66%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374
Score = 69 (29.3 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239
D S+G+ F+++ + EA++ +I M+G L +R + V + FK
Sbjct: 133 DEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGH-FK 174
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 222 (83.2 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 50/124 (40%), Positives = 74/124 (59%)
Query: 30 SGDGD--ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
SG G A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 88 DADYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
DA+ A+ MN L G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS F
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTF 122
Query: 146 GVIL 149
G IL
Sbjct: 123 GNIL 126
Score = 140 (54.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 40/134 (29%), Positives = 69/134 (51%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ I++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 95 KSGVGN--IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEA 150
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGNLDPEVDEKLLYDT 141
A AI MN + L + + V S ++ ++GA NI++ NL +VDE+ L D
Sbjct: 151 AQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDL 210
Query: 142 FSAFGVILQTPKIM 155
FS FG +L K+M
Sbjct: 211 FSQFGKMLSV-KVM 223
Score = 82 (33.9 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLA 256
D S+GF F+++ + EA+ +I+ M+G L +R + V + FK S+ +R R L
Sbjct: 133 DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FK--SRREREAELGARALE 189
Query: 257 AQN 259
N
Sbjct: 190 FTN 192
Score = 70 (29.7 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 17/66 (25%), Positives = 35/66 (53%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRH 247
L ++MRD ++G+S+ F F+N+ E + ++ M+G+ + R + YA + + +R
Sbjct: 218 LSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL---YAGRAQKRVERQ 273
Query: 248 GSAAER 253
R
Sbjct: 274 NELKRR 279
Score = 38 (18.4 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 180 GANIFIGNLDPEIMRD 195
G N+++ NLD I D
Sbjct: 293 GVNLYVKNLDDSIDDD 308
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 222 (83.2 bits), Expect = 3.1e-25, Sum P(3) = 3.1e-25
Identities = 50/124 (40%), Positives = 74/124 (59%)
Query: 30 SGDGD--ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
SG G A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 88 DADYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
DA+ A+ MN L G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS F
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTF 122
Query: 146 GVIL 149
G IL
Sbjct: 123 GNIL 126
Score = 140 (54.3 bits), Expect = 8.8e-11, Sum P(3) = 8.8e-11
Identities = 40/134 (29%), Positives = 69/134 (51%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ I++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 95 KSGVGN--IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEA 150
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGNLDPEVDEKLLYDT 141
A AI MN + L + + V S ++ ++GA NI++ NL +VDE+ L D
Sbjct: 151 AQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDL 210
Query: 142 FSAFGVILQTPKIM 155
FS FG +L K+M
Sbjct: 211 FSQFGKMLSV-KVM 223
Score = 82 (33.9 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLA 256
D S+GF F+++ + EA+ +I+ M+G L +R + V + FK S+ +R R L
Sbjct: 133 DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FK--SRREREAELGARALE 189
Query: 257 AQN 259
N
Sbjct: 190 FTN 192
Score = 80 (33.2 bits), Expect = 5.7e-07, Sum P(3) = 5.7e-07
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV L V E + +LF Q G +++V + +D + + +GF+ F E+A A+ M
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHS-RCFGFVNFEKHEEAQKAVVHM 251
Query: 97 NMIKLYGKPIRVNKA 111
N ++ G+ + +A
Sbjct: 252 NGKEVSGRLLYAGRA 266
Score = 78 (32.5 bits), Expect = 3.1e-25, Sum P(3) = 3.1e-25
Identities = 14/45 (31%), Positives = 30/45 (66%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 374
Score = 70 (29.7 bits), Expect = 2.5e-22, Sum P(2) = 2.5e-22
Identities = 17/66 (25%), Positives = 35/66 (53%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRH 247
L ++MRD ++G+S+ F F+N+ E + ++ M+G+ + R + YA + + +R
Sbjct: 218 LSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL---YAGRAQKRVERQ 273
Query: 248 GSAAER 253
R
Sbjct: 274 NELKRR 279
Score = 70 (29.7 bits), Expect = 5.7e-07, Sum P(3) = 5.7e-07
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D+ L FS +GVI K+M
Sbjct: 293 GVNLYVKNLDDSIDDDKLRKEFSPYGVITSA-KVM 326
Score = 38 (18.4 bits), Expect = 3.1e-25, Sum P(3) = 3.1e-25
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 180 GANIFIGNLDPEIMRD 195
G N+++ NLD I D
Sbjct: 293 GVNLYVKNLDDSIDDD 308
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 218 (81.8 bits), Expect = 6.8e-25, Sum P(3) = 6.8e-25
Identities = 49/124 (39%), Positives = 74/124 (59%)
Query: 30 SGDGD--ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
SG G A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F
Sbjct: 4 SGPGFPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 88 DADYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
DA+ A+ MN + G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS F
Sbjct: 64 DAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTF 122
Query: 146 GVIL 149
G IL
Sbjct: 123 GNIL 126
Score = 139 (54.0 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 40/134 (29%), Positives = 70/134 (52%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ I++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 95 KSGVGN--IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHEA 150
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGNLDPEVDEKLLYDT 141
A AI MN + L + + V S ++ +++GA NI++ NL +VDE+ L D
Sbjct: 151 AQQAITTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDL 210
Query: 142 FSAFGVILQTPKIM 155
FS FG +L K+M
Sbjct: 211 FSRFGKMLSV-KVM 223
Score = 90 (36.7 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV L V E + +LF + G +++V + +D + +G+GF+ F E+A A+ M
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHS-RGFGFVNFQKHEEAQKAVMDM 251
Query: 97 NMIKLYGKPIRVNKA 111
N ++ G+ + V +A
Sbjct: 252 NGKEVSGRLLYVGRA 266
Score = 87 (35.7 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
L ++MRD D+G+S+GF F+N+ E + ++ M+G+ + R + V A K+
Sbjct: 218 LSVKVMRD-DSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKR 269
Score = 81 (33.6 bits), Expect = 6.8e-25, Sum P(3) = 6.8e-25
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ L +P+ V+ A +K+ +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQRKEER 374
Score = 76 (31.8 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 186 GN-LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
GN L +++ D D G S+GF F+++ + EA+ +I M+G L +R + V + FK S+
Sbjct: 123 GNILSCKVVCD-DHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGH-FK--SRR 177
Query: 245 DRHGSAAERLLAAQN 259
+R R + N
Sbjct: 178 EREVELGARAMEFTN 192
Score = 72 (30.4 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L FS +GVI K+M
Sbjct: 293 GVNLYVKNLDDSIDDEKLRKEFSPYGVITSA-KVM 326
Score = 37 (18.1 bits), Expect = 6.8e-25, Sum P(3) = 6.8e-25
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 180 GANIFIGNLDPEI 192
G N+++ NLD I
Sbjct: 293 GVNLYVKNLDDSI 305
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 244 (91.0 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 64/189 (33%), Positives = 100/189 (52%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E++++E F +GPV+++ + +D T+ GY ++ F DA+ A+
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
MN L+GKP+R+ + GA NIFI NLD +D K +YDTFS FG IL
Sbjct: 92 TMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKV 151
Query: 154 IMN---MIKLYG-KPIRVNKASSH--QK-N--LDVGANIFIGNLDPEIMRDPDTGNS-KG 203
++ K YG +A+ + QK N L G +F+G P R+ + G + K
Sbjct: 152 AIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQ 211
Query: 204 FAFINYASF 212
F + +F
Sbjct: 212 FTNVYVKNF 220
Score = 115 (45.5 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 33/123 (26%), Positives = 59/123 (47%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + D +GYGF+ F EE A A
Sbjct: 118 GAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNA 176
Query: 93 IKIMNMIKLYGKPIRVNKASSH-QKNLDVG------ANIFIGNLDPEVDEKLLYDTFSAF 145
I+ +N + L GK + V K Q+N ++G N+++ N +++ L F+ F
Sbjct: 177 IQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKF 236
Query: 146 GVI 148
G I
Sbjct: 237 GNI 239
Score = 92 (37.4 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 20/71 (28%), Positives = 41/71 (57%)
Query: 186 GNL-DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
GN+ ++M D + G SKGF F+ + E + +++ M+ + +C++P+ V+ A +K+
Sbjct: 341 GNITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKE--- 396
Query: 245 DRHGSAAERLL 255
DR A + +
Sbjct: 397 DRRAQLASQYM 407
Score = 81 (33.6 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 18/90 (20%), Positives = 45/90 (50%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GE+ +YV D ++ + +LF + G + + + V +G+GF+ F E
Sbjct: 206 GETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT--VEGKSKGFGFVAFANPE 263
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKN 117
+A+ A++ ++ + G ++++ + +K+
Sbjct: 264 EAETAVQALHDSTIEGTDLKLHVCRAQKKS 293
Score = 72 (30.4 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
G SKGF F+ +A+ E ++ ++ A+H + + + + + K +RH ++
Sbjct: 249 GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKL-HVCRAQKKSERHAELKKK 302
Score = 61 (26.5 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 109 NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
+KA QK G N+++ NLD VD+ L F ++G I K+M
Sbjct: 306 HKAERMQKYQ--GVNLYVKNLDETVDDDGLKKQFESYGNITSA-KVM 349
Score = 41 (19.5 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 168 NKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASID 220
+KA QK G N+++ NLD + D D G K F +Y + ++ D
Sbjct: 306 HKAERMQKYQ--GVNLYVKNLDETV--DDD-GLKKQFE--SYGNITSAKVMTD 351
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 218 (81.8 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 49/124 (39%), Positives = 74/124 (59%)
Query: 30 SGDGD--ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
SG G A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F
Sbjct: 4 SGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 88 DADYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
DA+ A+ MN + G+PIR+ ++ + VG NIFI NL+ +D K LYDTFS F
Sbjct: 64 DAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTF 122
Query: 146 GVIL 149
G IL
Sbjct: 123 GNIL 126
Score = 142 (55.0 bits), Expect = 6.4e-11, Sum P(3) = 6.4e-11
Identities = 40/134 (29%), Positives = 70/134 (52%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ I++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 95 KSGVGN--IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEA 150
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGNLDPEVDEKLLYDT 141
A AI MN + L + + V S ++ +++GA NI++ NL +VDE+ L D
Sbjct: 151 AQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDL 210
Query: 142 FSAFGVILQTPKIM 155
FS FG +L K+M
Sbjct: 211 FSQFGKMLSV-KVM 223
Score = 93 (37.8 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV L V E + +LF Q G +++V + +D + +G+GF+ F E+A A+ M
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHS-RGFGFVNFEKHEEAQKAVVNM 251
Query: 97 NMIKLYGKPIRVNKA 111
N ++ G+ + V +A
Sbjct: 252 NGREVSGRLLYVGRA 266
Score = 91 (37.1 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 25/88 (28%), Positives = 47/88 (53%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
+ M +Y K + V+ Q+ D+ + F L ++MRD D+G+S+GF F+N+
Sbjct: 186 RAMEFTNIYVKNLHVDV--DEQRLQDLFSQ-FGKMLSVKVMRD-DSGHSRGFGFVNFEKH 241
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKK 240
E + ++ M+G+ + R + V A K+
Sbjct: 242 EEAQKAVVNMNGREVSGRLLYVGRAQKR 269
Score = 78 (32.5 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 14/45 (31%), Positives = 30/45 (66%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 374
Score = 75 (31.5 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLA 256
D S+GF F+++ + EA+ +I M+G L +R + V + FK S+ +R R +
Sbjct: 133 DEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGH-FK--SRREREVELGARAME 189
Query: 257 AQN 259
N
Sbjct: 190 FTN 192
Score = 72 (30.4 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L FS +GVI K+M
Sbjct: 293 GVNLYVKNLDDSIDDEKLRKEFSPYGVITSA-KVM 326
Score = 37 (18.1 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 180 GANIFIGNLDPEI 192
G N+++ NLD I
Sbjct: 293 GVNLYVKNLDDSI 305
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 217 (81.4 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 48/124 (38%), Positives = 74/124 (59%)
Query: 30 SGDGD--ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
SG G A++YVG L V+E +++E F +GP++++ + +D T+ GY +I F
Sbjct: 4 SGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 88 DADYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
DA+ A+ MN + G+PIR+ ++ + VG N+FI NL+ +D K LYDTFS F
Sbjct: 64 DAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVG-NVFIKNLEDSIDNKALYDTFSTF 122
Query: 146 GVIL 149
G IL
Sbjct: 123 GNIL 126
Score = 145 (56.1 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 40/134 (29%), Positives = 70/134 (52%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ +++ L+D + +++ F G +++ + D +G+GF+ F E
Sbjct: 95 KSGVGN--VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHEA 150
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGNLDPEVDEKLLYDT 141
A AI+ MN + L + + V S ++ ++GA NI++ NL +VDE+ L D
Sbjct: 151 AQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDL 210
Query: 142 FSAFGVILQTPKIM 155
FS FG IL K+M
Sbjct: 211 FSQFGKILSV-KVM 223
Score = 88 (36.0 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
L ++MRD D+G+S+GF F+N+ E + ++ M+G+ + R + V A K+
Sbjct: 218 LSVKVMRD-DSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKR 269
Score = 79 (32.9 bits), Expect = 9.6e-23, Sum P(2) = 9.6e-23
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 186 GN-LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
GN L +++ D D G S+GF F+++ + EA+ +I M+G L +R + V + FK S+
Sbjct: 123 GNILSCKVVCD-DHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGH-FK--SRR 177
Query: 245 DRHGSAAERLLAAQN 259
+R R L N
Sbjct: 178 EREAELGARALEFTN 192
Score = 78 (32.5 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 14/45 (31%), Positives = 30/45 (66%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 374
Score = 37 (18.1 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 180 GANIFIGNLDPEI 192
G N+++ NLD I
Sbjct: 293 GVNLYVKNLDDSI 305
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 235 (87.8 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 52/132 (39%), Positives = 78/132 (59%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +DR T+ GY + F EDA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIF+ NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDRSIDSKTLYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYG 162
+ N K YG
Sbjct: 130 VVCDENGSKGYG 141
Score = 143 (55.4 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 50/192 (26%), Positives = 91/192 (47%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ I+V LD + +++ F G +++ + D +GYGF+ F +E+
Sbjct: 95 KSGVGN--IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEE 150
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQ-KNLDVGA------NIFIGNLDPEVDEKLLYDT 141
A+ AI+ MN + L + + V + S + + ++GA N++I NL ++D++ L D
Sbjct: 151 AERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDL 210
Query: 142 FSAFGVILQTPKIMN----MIKLYG-----KPIRVNKASSHQKNLDV-GANIFIGNLDPE 191
FS FG L K+M K +G + KA D+ G I++G +
Sbjct: 211 FSRFGPALSV-KVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKK 269
Query: 192 IMRDPDTGNSKG 203
+ R + + G
Sbjct: 270 VERQTELKHKFG 281
Score = 141 (54.7 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 57/215 (26%), Positives = 101/215 (46%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ L + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKS-KGFGFVSFERHEDARKAVDEM 251
Query: 97 NMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT-PKIM 155
N L GK I V +A QK ++ E+ K FG + Q PKI
Sbjct: 252 NGKDLNGKQIYVGRA---QKKVE---------RQTELKHK--------FGQMKQDKPKIE 291
Query: 156 NMIKLYGKPIRVNKASSHQKNLDVGANI--FIGNLDP--EIMRDPDT---GNSKGFAFIN 208
+ + + +R + + KNLD G + P I T G SKGF F+
Sbjct: 292 QVPQ--DRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVC 349
Query: 209 YASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 350 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 384
Score = 79 (32.9 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
D SKG+ F+++ + E ++ +I+ M+G +L +R + V FK S+ DR R
Sbjct: 133 DENGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVG-RFK--SRRDRQAELGAR 186
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 224 (83.9 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 46/117 (39%), Positives = 72/117 (61%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++Y+G L V+E +++E F +GP++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
MN + G+PIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG-NVFIKNLDDSIDNKALYDTFSAFGDIL 126
Score = 151 (58.2 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 48/182 (26%), Positives = 85/182 (46%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ +++ LDD + +++ F G +++ + D +GYGF+ F +E
Sbjct: 95 KSGVGN--VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGS--RGYGFVHFETQEA 150
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGNLDPEVDEKLLYDT 141
A+ AI+ MN + L + + V S ++ L+ GA N++I N ++D+K L +
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEI 210
Query: 142 FSAFGVILQTPKIMNM--------IKLYGKPIRVNKASSHQKNLDV-GANIFIGNLDPEI 192
FSAFG L +M+ YG KA + +V G +++G I
Sbjct: 211 FSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRI 270
Query: 193 MR 194
R
Sbjct: 271 ER 272
Score = 90 (36.7 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 24/94 (25%), Positives = 47/94 (50%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
K+M +Y K + K + + F L ++M D ++G S+GF F+NY +
Sbjct: 186 KVMEFTNVYIKNFGEDMDDKRLKEI---FSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNH 241
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKK-DSKGD 245
E + ++ M+G+ + R + V A K+ + +G+
Sbjct: 242 EEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGE 275
Score = 80 (33.2 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 14/45 (31%), Positives = 30/45 (66%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374
Score = 68 (29.0 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239
D S+G+ F+++ + EA++ +I M+G L +R + V + FK
Sbjct: 133 DEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGH-FK 174
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 206 (77.6 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 51/149 (34%), Positives = 82/149 (55%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
++++Y G LD KV+E +++LF VV+V + +D+ + GY +I F DA A+
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAM 106
Query: 94 KIMNMIKLYGKPIRVNKASSHQKN-LDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+ +N L+ +PIR+ ++ L NIFI NLD +D K L++TFS+FG IL
Sbjct: 107 EALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCK 166
Query: 153 KIMNMI---KLYGKPIRVNKASSHQKNLD 178
M++ K YG ++ K S Q +D
Sbjct: 167 VAMDVTGRSKGYGF-VQFEKEESAQAAID 194
Score = 135 (52.6 bits), Expect = 3.0e-11, Sum P(3) = 3.0e-11
Identities = 37/123 (30%), Positives = 58/123 (47%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + ++E F G +++ + D VT +GYGF++F EE A A
Sbjct: 134 GKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAA 192
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNL-DVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I +N + + K + V Q+ D N+++ NL E+ E L TF F
Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKF 252
Query: 146 GVI 148
GVI
Sbjct: 253 GVI 255
Score = 88 (36.0 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 22/83 (26%), Positives = 45/83 (54%)
Query: 186 GNL-DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
GN+ ++M +P G S+GF F+ Y++ E + ++ M+G+ + +P+ ++ A +K+ +
Sbjct: 356 GNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRR 414
Query: 245 DRHGSAAERLLAAQNPLSQADRP 267
H A + A P+S P
Sbjct: 415 -AHLQALFSQIRAPGPMSGFHHP 436
Score = 80 (33.2 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 192 IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+MRD +GNS+ F F+N+ EA+ ++++ M+G L + + V A KK +
Sbjct: 260 VMRD-QSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSER 310
Score = 75 (31.5 bits), Expect = 9.1e-07, Sum P(3) = 9.1e-07
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 107 RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMN 156
R+N+ Q GAN+++ NLD VD++ L + FS +G + + ++N
Sbjct: 322 RINRFEKSQ-----GANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLN 366
Score = 63 (27.2 bits), Expect = 9.1e-07, Sum P(3) = 9.1e-07
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV L ++ E + + F + G + + + +D+ + + +GF+ F E A A++ M
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKM 289
Query: 97 NMIKLYGKPIRVNKA 111
N I L + V +A
Sbjct: 290 NGISLGDDVLYVGRA 304
Score = 40 (19.1 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 166 RVNKASSHQKNLDVGANIFIGNLDPEI 192
R+N+ Q GAN+++ NLD +
Sbjct: 322 RINRFEKSQ-----GANLYLKNLDDSV 343
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 213 (80.0 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 46/117 (39%), Positives = 71/117 (60%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A +YVG LD V+E ++++ F +GP+ + +D VT++ GYG++ F DA++A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
MN + GKP R+ ++ H + VG NIFI NLD +D + L+ FSAFG IL
Sbjct: 78 TMNFDLINGKPFRLMWSQPDDHLRKSGVG-NIFIKNLDKSIDNRALFYLFSAFGNIL 133
Score = 91 (37.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 29/126 (23%), Positives = 58/126 (46%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ I++ LD + ++ LF G +++ + D +GY ++ F
Sbjct: 102 KSGVGN--IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAA 157
Query: 89 ADYAIKIMNMIKLYGKPIRVNK--------ASSHQKNLDVGANIFIGNLDPEVDEKLLYD 140
A+ AI MN ++L + + V + A ++ N+F+ N ++D++ L
Sbjct: 158 ANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKK 217
Query: 141 TFSAFG 146
FS +G
Sbjct: 218 LFSEYG 223
Score = 89 (36.4 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
+++RD TG SKGF F+ Y + EA+ ++ +HG+ + + + V A KK
Sbjct: 229 KVIRDA-TGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKK 277
Score = 68 (29.0 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 186 GN-LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239
GN L +++ D D G SKG+A++++ S A++ +I M+G L NR + V FK
Sbjct: 130 GNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG-RFK 181
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 218 (81.8 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
Identities = 45/117 (38%), Positives = 71/117 (60%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++Y+G L V+E +++E F +GP++++ + +D T+ Y +I F DA+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
MN + G+PIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG-NVFIKNLDESIDNKALYDTFSAFGNIL 126
Score = 148 (57.2 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 49/185 (26%), Positives = 85/185 (45%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ +++ LD+ + +++ F G +++ + D +GYGF+ F E
Sbjct: 95 KSGVGN--VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEA 150
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGNLDPEVDEKLLYDT 141
A+ AI+ MN + L + + V S ++ L+ GA N++I N ++D+K L +
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210
Query: 142 FSAFGVILQTPKIMNM--------IKLYGKPIRVNKASSHQKNLDV-GANIFIGNLDPEI 192
FSAFG L +M+ YG KA S +V G I++G I
Sbjct: 211 FSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI 270
Query: 193 MRDPD 197
R +
Sbjct: 271 ERQSE 275
Score = 94 (38.1 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 186 GN-LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
GN L ++M D D+G S+GF F+NY + E + ++ M+G+ + R I V A K+
Sbjct: 215 GNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Score = 80 (33.2 bits), Expect = 6.7e-23, Sum P(2) = 6.7e-23
Identities = 14/45 (31%), Positives = 30/45 (66%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374
Score = 71 (30.1 bits), Expect = 5.8e-22, Sum P(2) = 5.8e-22
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239
D S+G+ F+++ + EA++ +I M+G L +R + V + FK
Sbjct: 133 DEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGH-FK 174
Score = 38 (18.4 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 180 GANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQ 225
G N+++ NLD I D D + F+ Y + ++ + H +
Sbjct: 293 GVNLYVKNLDDGI--DDDRLRKE---FLPYGTITSAKVMTEGGHSK 333
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 215 (80.7 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 47/124 (37%), Positives = 77/124 (62%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L++ F GPV+++ + +D+VT+ GY ++ F+ DA A+
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K LY+ FSAFG IL +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIG-NVFIKNLDKSIDNKTLYEHFSAFGKILSS- 127
Query: 153 KIMN 156
K+M+
Sbjct: 128 KVMS 131
Score = 119 (46.9 bits), Expect = 0.00013, P = 0.00013
Identities = 43/182 (23%), Positives = 79/182 (43%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + ++E F G +++ + D Q +GY F+ F + AD A
Sbjct: 96 GIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRA 153
Query: 93 IKIMNMIKLYGKPIRVNKASSHQ-KNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN L G + V + + + + ++ + N++I N ++D++ L D FS +
Sbjct: 154 IEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKY 213
Query: 146 GVILQTPKIMN----MIKLYG-----KPIRVNKASSHQKNLDV-GANIFIGNLDPEIMRD 195
G L K+M K +G KA D+ G IF+G ++ R
Sbjct: 214 GKTLSV-KVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQ 272
Query: 196 PD 197
+
Sbjct: 273 AE 274
Score = 85 (35.0 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS-YAFKKDSKGDR 246
L ++M D D G SKG+AF+++ + A+D +I+ M+G+ L + V + +KD + +
Sbjct: 125 LSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 182
Query: 247 HGSAAE 252
A+E
Sbjct: 183 RSKASE 188
Score = 84 (34.6 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
L ++M D +G SKGF F+++ S EA+ +++ M+G+ + + I V A KK
Sbjct: 217 LSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKK 268
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 215 (80.7 bits), Expect = 7.1e-24, Sum P(2) = 7.1e-24
Identities = 47/124 (37%), Positives = 77/124 (62%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E L++ F GPV+++ + +D+VT+ GY ++ F+ DA A+
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ ++ + +G N+FI NLD +D K LY+ FSAFG IL +
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIG-NVFIKNLDKSIDNKTLYEHFSAFGKILSS- 185
Query: 153 KIMN 156
K+M+
Sbjct: 186 KVMS 189
Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
Identities = 43/182 (23%), Positives = 79/182 (43%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + ++E F G +++ + D Q +GY F+ F + AD A
Sbjct: 154 GIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRA 211
Query: 93 IKIMNMIKLYGKPIRVNKASSHQ-KNLDVGA------NIFIGNLDPEVDEKLLYDTFSAF 145
I+ MN L G + V + + + + ++ + N++I N ++D++ L D FS +
Sbjct: 212 IEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKY 271
Query: 146 GVILQTPKIMN----MIKLYG-----KPIRVNKASSHQKNLDV-GANIFIGNLDPEIMRD 195
G L K+M K +G KA D+ G IF+G ++ R
Sbjct: 272 GKTLSV-KVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQ 330
Query: 196 PD 197
+
Sbjct: 331 AE 332
Score = 85 (35.0 bits), Expect = 7.1e-24, Sum P(2) = 7.1e-24
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS-YAFKKDSKGDR 246
L ++M D D G SKG+AF+++ + A+D +I+ M+G+ L + V + +KD + +
Sbjct: 183 LSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 240
Query: 247 HGSAAE 252
A+E
Sbjct: 241 RSKASE 246
Score = 84 (34.6 bits), Expect = 9.0e-24, Sum P(2) = 9.0e-24
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
L ++M D +G SKGF F+++ S EA+ +++ M+G+ + + I V A KK
Sbjct: 275 LSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKK 326
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 209 (78.6 bits), Expect = 7.2e-24, Sum P(3) = 7.2e-24
Identities = 43/116 (37%), Positives = 69/116 (59%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF Q G V ++ + +D VT+ GY ++ + D + A++
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 120
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
+N + G+P R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 121 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 176
Score = 139 (54.0 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 48/172 (27%), Positives = 79/172 (45%)
Query: 107 RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIR 166
R KAS +Q G N++I NLD EVD++ L FS FG I + + I G+
Sbjct: 336 RQEKASKYQ-----GVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPGEEGE 390
Query: 167 VNKASSHQKNLDVGANIFIGN-LDPEIMRDPDT------GNSKGFAFINYASFEASDASI 219
+ +KN + G+ PE D+ G SKGF F+ +A+ + + ++
Sbjct: 391 SKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATKAV 450
Query: 220 DAMHGQYLCNRPISVSYAFKKDSKGDR--HGSAAERLLAAQNPLSQADRPHQ 269
M+ + + N+P+ V+ A +KD + ++ A L Q + A P Q
Sbjct: 451 AEMNQRMVNNKPLYVALAQRKDVRKNQLEQSIQARNQLRMQQAAAAAGMPQQ 502
Score = 110 (43.8 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 23/81 (28%), Positives = 46/81 (56%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV ++ +V++ LF + G V + + +D+ T +G+GF+ F EDA A++ +
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQEL 303
Query: 97 NMIKLYGKPIRVNKASS-HQK 116
N + +G+ + V +A H++
Sbjct: 304 NEKEFHGQNLYVGRAQKKHER 324
Score = 108 (43.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 30/121 (24%), Positives = 56/121 (46%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + + + F G +++ + +D +GYGF+ + +E A A
Sbjct: 147 GQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQA 205
Query: 93 IKIMNMIKLYGKPIRVN----KASSHQKNLDVGAN---IFIGNLDPEVDEKLLYDTFSAF 145
IK +N + L K + V K K ++ AN I++ N++PEV + F +
Sbjct: 206 IKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKY 265
Query: 146 G 146
G
Sbjct: 266 G 266
Score = 84 (34.6 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 186 GN-LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF-KKD-- 241
GN L ++ +D + GNSKG+ F++Y + EA+ +I ++G L + + V + KKD
Sbjct: 173 GNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQ 231
Query: 242 SKGD 245
SK D
Sbjct: 232 SKFD 235
Score = 79 (32.9 bits), Expect = 7.2e-24, Sum P(3) = 7.2e-24
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 192 IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ RD +TG S+GF F+N+ S E + ++ ++ + + + V A KK +
Sbjct: 273 LARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHER 324
Score = 42 (19.8 bits), Expect = 7.2e-24, Sum P(3) = 7.2e-24
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 154 IMNMIKLY-GKPIRVNKASSHQKNLDVG-ANIFIGNLDPEIMRD 195
++N K+Y G I S + NI++ N++PE+ D
Sbjct: 213 LLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDD 256
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 221 (82.9 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 48/124 (38%), Positives = 75/124 (60%)
Query: 30 SGDGD--ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
SG G A++YVG L V+E +++E F +GP++++ + +D ++ GY +I F
Sbjct: 4 SGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPA 63
Query: 88 DADYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
DA+ A+ MN + G+P+R+ ++ + VG N+FI NLD +D K LYDTFSAF
Sbjct: 64 DAERALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVG-NVFIKNLDDSIDNKALYDTFSAF 122
Query: 146 GVIL 149
G IL
Sbjct: 123 GNIL 126
Score = 125 (49.1 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 36/134 (26%), Positives = 67/134 (50%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ +++ LDD + +++ F G +++ + D +G+GF+ F +E
Sbjct: 95 KSGVGN--VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQEA 150
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGNLDPEVDEKLLYDT 141
A AI+ MN + L + + V S ++ + GA N++I N ++D+ L +
Sbjct: 151 ATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREI 210
Query: 142 FSAFGVILQTPKIM 155
FS FG L K+M
Sbjct: 211 FSRFGKTLSV-KVM 223
Score = 82 (33.9 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
L ++M D TG SKGF F+N+ E + ++ M+G+ + R + V A K+
Sbjct: 218 LSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKR 269
Score = 80 (33.2 bits), Expect = 3.2e-23, Sum P(2) = 3.2e-23
Identities = 14/45 (31%), Positives = 30/45 (66%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G+SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374
Score = 70 (29.7 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLA 256
D S+G F+++ + EA+ +I M+G L +R + V + FK S+ +R R +
Sbjct: 133 DENGSRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGH-FK--SRKEREAEFGARAME 189
Query: 257 AQN 259
N
Sbjct: 190 FTN 192
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 221 (82.9 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 58/184 (31%), Positives = 95/184 (51%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E ++++ F +G ++++ + +D +T+ GY +I F DA+ A+
Sbjct: 11 ASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+PIR+ ++ + VG NIFI N+D +D K LYDTFSAFG IL
Sbjct: 71 TMNYEVIKGRPIRIMWSQRDPGLRKSGVG-NIFIKNMDESIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYG-----KPIRVNKASSHQKNLDVG-ANIFIGNLDPEIMRDPDTGNSKGF 204
+ N K YG N+A + + +F+G+ R+ + G +K
Sbjct: 130 VVCDENGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMG-AKAV 188
Query: 205 AFIN 208
F N
Sbjct: 189 EFTN 192
Score = 122 (48.0 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 33/128 (25%), Positives = 66/128 (51%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ I++ +D+ + +++ F G +++ + D +GYGF+ F +E
Sbjct: 95 KSGVGN--IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEA 150
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGNLDPEVDEKLLYDT 141
A+ AI+ MN + L + + V S ++ ++GA N++I N ++D + L +
Sbjct: 151 ANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNI 210
Query: 142 FSAFGVIL 149
F+ FG L
Sbjct: 211 FTEFGKTL 218
Score = 85 (35.0 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 24/103 (23%), Positives = 52/103 (50%)
Query: 17 QSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQ 76
+S + + E G ++ + +Y+ + + + +F + G ++V + D ++ +
Sbjct: 174 KSRKEREAEMGAKAVEF-TNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRS-R 231
Query: 77 GYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLD 119
G+GF+ F+ DA A+ MN +L G+ + V +A QK L+
Sbjct: 232 GFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRA---QKRLE 271
Score = 81 (33.6 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 14/47 (29%), Positives = 31/47 (65%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
D G+S+GF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 328 DGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374
Score = 69 (29.3 bits), Expect = 4.2e-22, Sum P(2) = 4.2e-22
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 192 IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK-DSKGD 245
+M D + G S+GF F+N+ + + ++ M+G+ L R + V A K+ + +G+
Sbjct: 222 VMTD-ERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGE 275
Score = 65 (27.9 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L F+ +G I K+M
Sbjct: 293 GVNLYVKNLDDSIDDEKLRKEFAPYGTITSA-KVM 326
Score = 40 (19.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 180 GANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQ 225
G N+++ NLD I D D K FA Y + ++ D H +
Sbjct: 293 GVNLYVKNLDDSI--D-DEKLRKEFA--PYGTITSAKVMTDGGHSR 333
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 213 (80.0 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 50/154 (32%), Positives = 86/154 (55%)
Query: 1 MSLGREIQAGISTPCLQSLSQTKLEGGGESG--DGDATIYVGGLDDKVSETLMWELFVQS 58
+++G + + + Q+ E G SG + A++YVG L+ V+E ++E+F
Sbjct: 16 LNIGSTTEEQSAAAATTTADQSAEEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPI 75
Query: 59 GPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV---NKASSHQ 115
G V ++ + +D V++ GY ++ + ED + AI+ +N + G+P R+ + S +
Sbjct: 76 GQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSAR 135
Query: 116 KNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
++ D NIFI NL P +D K L+DTFSAFG IL
Sbjct: 136 RSGD--GNIFIKNLHPAIDNKALHDTFSAFGKIL 167
Score = 105 (42.0 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 24/83 (28%), Positives = 47/83 (56%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IYV +D SE +LF G + ++++ KD+ ++ +G+GF+ F E A A++ +
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKS-KGFGFVNFEDHESAVKAVEEL 293
Query: 97 NMIKLYGKPIRVNKASSHQKNLD 119
N ++ G+ I V +A ++ L+
Sbjct: 294 NDKEINGQKIYVGRAQKKRERLE 316
Score = 99 (39.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 35/142 (24%), Positives = 64/142 (45%)
Query: 14 PCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQ 73
PC SQ SGDG+ I++ L + + + F G +++ + D Q
Sbjct: 122 PCRIMWSQRD-PSARRSGDGN--IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQ 178
Query: 74 THQGYGFIEFMGEEDADYAIKIMNMIKLYGKPI----RVNKASSHQKNLDVGAN---IFI 126
+ + +GF+ + E A+ AI+ +N + L + + ++K K ++ AN I++
Sbjct: 179 S-KCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYV 237
Query: 127 GNLDPEVDEKLLYDTFSAFGVI 148
N+D E+ FS FG I
Sbjct: 238 KNIDLNYSEESFEKLFSPFGKI 259
Score = 80 (33.2 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
G SK F F++Y + EA++A+I+ ++G L +R + V K SK DR E
Sbjct: 177 GQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVG---KHISKKDRESKFEE 227
Score = 76 (31.8 bits), Expect = 6.1e-22, Sum P(2) = 6.1e-22
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA 250
++M D + G SKGF F+ + + E + +I M+ + + +P+ V+ A +KD + S
Sbjct: 366 KVMVD-EAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRR----SQ 420
Query: 251 AERLLAAQNPL 261
E+ + A+N +
Sbjct: 421 LEQQIQARNQM 431
Score = 70 (29.7 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 194 RDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
+D D G SKGF F+N+ E++ +++ ++ + + + I V A KK
Sbjct: 266 KDQD-GKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKK 311
Score = 51 (23.0 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 19/76 (25%), Positives = 33/76 (43%)
Query: 153 KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASF 212
++ + K Y + +R+ K + +Q G N+F+ NLD I + K F I A
Sbjct: 314 RLEELKKQY-EAVRLEKLAKYQ-----GVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKV 367
Query: 213 EASDASIDAMHGQYLC 228
+A G ++C
Sbjct: 368 MVDEAGKSKGFG-FVC 382
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 205 (77.2 bits), Expect = 5.1e-22, Sum P(2) = 5.1e-22
Identities = 44/117 (37%), Positives = 70/117 (59%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A +YVG LD V+E ++++ F +GP+ + +D VT++ GYG++ F DA++A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
MN + GKP R+ ++ + +G NIFI NLD +D + L+ FSAFG IL
Sbjct: 78 TMNFDLINGKPFRLMWSQPDDRLRKSGIG-NIFIKNLDKSIDNRALFYLFSAFGSIL 133
Score = 91 (37.1 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 29/126 (23%), Positives = 58/126 (46%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ I++ LD + ++ LF G +++ + D +GY ++ F
Sbjct: 102 KSGIGN--IFIKNLDKSIDNRALFYLFSAFGSILSCKVVCD--DNGSKGYAYVHFDSLAA 157
Query: 89 ADYAIKIMNMIKLYGKPIRVNK--------ASSHQKNLDVGANIFIGNLDPEVDEKLLYD 140
A+ AI MN ++L + + V + A ++ N+F+ N ++D+ L +
Sbjct: 158 ANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKE 217
Query: 141 TFSAFG 146
FS +G
Sbjct: 218 LFSEYG 223
Score = 84 (34.6 bits), Expect = 5.1e-22, Sum P(2) = 5.1e-22
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
+++RD +G SKGF F+ Y + EA+ ++ +HG+ + + + V A KK
Sbjct: 229 KVIRD-SSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277
Score = 78 (32.5 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235
+ G KGF I ++SFE + ++D M+G+ + ++P+ V+
Sbjct: 336 EVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVT 374
Score = 67 (28.6 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239
D SKG+A++++ S A++ +I M+G L NR + V FK
Sbjct: 140 DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG-RFK 181
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 205 (77.2 bits), Expect = 6.5e-22, Sum P(2) = 6.5e-22
Identities = 45/117 (38%), Positives = 70/117 (59%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A +YVG LD V+E ++++ F +GP+ + +D VT++ GYG++ F DA++A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
MN + GKP R+ ++ + VG NIFI NLD +D + L+ FSAFG IL
Sbjct: 78 TMNFDLINGKPFRLMWSQPDDRLRKSGVG-NIFIKNLDKSIDNRALFYLFSAFGNIL 133
Score = 91 (37.1 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 28/126 (22%), Positives = 59/126 (46%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ I++ LD + ++ LF G +++ + D +GY ++ F
Sbjct: 102 KSGVGN--IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAA 157
Query: 89 ADYAIKIMNMIKLYGKPIRVNK--------ASSHQKNLDVGANIFIGNLDPEVDEKLLYD 140
A+ AI MN ++L + + V + A ++ N+F+ N+ ++D++ L +
Sbjct: 158 ANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKE 217
Query: 141 TFSAFG 146
F +G
Sbjct: 218 LFCEYG 223
Score = 83 (34.3 bits), Expect = 6.5e-22, Sum P(2) = 6.5e-22
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
+++RD +G SKGF F+ Y + EA+ ++ +HG+ + + + V A KK
Sbjct: 229 KVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277
Score = 76 (31.8 bits), Expect = 3.5e-21, Sum P(2) = 3.5e-21
Identities = 12/39 (30%), Positives = 26/39 (66%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235
+ G KGF + ++SFE + ++D M+G+ + ++P+ V+
Sbjct: 336 EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374
Score = 68 (29.0 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 186 GN-LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239
GN L +++ D D G SKG+A++++ S A++ +I M+G L NR + V FK
Sbjct: 130 GNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG-RFK 181
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 205 (77.2 bits), Expect = 6.5e-22, Sum P(2) = 6.5e-22
Identities = 45/117 (38%), Positives = 70/117 (59%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A +YVG LD V+E ++++ F +GP+ + +D VT++ GYG++ F DA++A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
MN + GKP R+ ++ + VG NIFI NLD +D + L+ FSAFG IL
Sbjct: 78 TMNFDLINGKPFRLMWSQPDDRLRKSGVG-NIFIKNLDKSIDNRALFYLFSAFGNIL 133
Score = 92 (37.4 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 29/126 (23%), Positives = 59/126 (46%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ I++ LD + ++ LF G +++ + D +GY ++ F
Sbjct: 102 KSGVGN--IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAA 157
Query: 89 ADYAIKIMNMIKLYGKPIRVNK--------ASSHQKNLDVGANIFIGNLDPEVDEKLLYD 140
A+ AI MN ++L + + V + A ++ N+F+ N ++D++ L +
Sbjct: 158 ANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGNDMDDEKLKE 217
Query: 141 TFSAFG 146
FS +G
Sbjct: 218 IFSGYG 223
Score = 83 (34.3 bits), Expect = 6.5e-22, Sum P(2) = 6.5e-22
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
+++RD +G SKGF F+ Y + EA+ ++ +HG+ + + + V A KK
Sbjct: 229 KVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKK 277
Score = 74 (31.1 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
Identities = 12/39 (30%), Positives = 26/39 (66%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235
+ G KGF + ++SFE + ++D M+G+ + ++P+ V+
Sbjct: 336 EVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVT 374
Score = 68 (29.0 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 186 GN-LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFK 239
GN L +++ D D G SKG+A++++ S A++ +I M+G L NR + V FK
Sbjct: 130 GNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG-RFK 181
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 214 (80.4 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 43/116 (37%), Positives = 69/116 (59%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++Y+G L VSE +++E F +GPV+++ + +D ++ GY ++ F DA+ A+
Sbjct: 57 ASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALD 116
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
MN ++G+P+R+ + G NIFI NLD +D K +YDTFS FG IL
Sbjct: 117 TMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNIL 172
Score = 122 (48.0 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 38/139 (27%), Positives = 66/139 (47%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G+ I++ LD + +++ F G +++ + D + +GYGF+ F E A A
Sbjct: 143 GNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNS-KGYGFVHFETEHSAQTA 201
Query: 93 IKIMNMIKLYGKPIRVNKASSH-QKNLDVG------ANIFIGNLDPEVDEKLLYDTFSAF 145
I+ +N + L K + V K Q+ ++G N+F+ N +D++ L FS F
Sbjct: 202 IEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKF 261
Query: 146 GVILQTPKIMNMIKLYGKP 164
G I T ++ M GKP
Sbjct: 262 GEI--TSAVV-MTDAQGKP 277
Score = 74 (31.1 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA 250
++M D + G SKGF F+ + E + A++ M+ + + +P+ V+ A +K+ DR
Sbjct: 373 KVMVD-ENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKE---DRRAQL 428
Query: 251 AERLL 255
A + +
Sbjct: 429 ASQYM 433
Score = 70 (29.7 bits), Expect = 9.7e-05, Sum P(3) = 9.7e-05
Identities = 18/90 (20%), Positives = 44/90 (48%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GESG ++V + + + + +F + G + + + D + +G+GF+ F ++
Sbjct: 231 GESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKP-KGFGFVAFADQD 289
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKN 117
A A++ +N L G +++ + +K+
Sbjct: 290 AAGQAVEKLNDSILEGTDCKLSVCRAQKKS 319
Score = 64 (27.6 bits), Expect = 9.7e-05, Sum P(3) = 9.7e-05
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ N++ ++++ L D FS+FG I K+M
Sbjct: 342 GVNLYVKNIEEDLNDDGLRDHFSSFGTITSA-KVM 375
Score = 56 (24.8 bits), Expect = 8.0e-20, Sum P(2) = 8.0e-20
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 192 IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYL--CNRPISVSYAFKKDSK 243
+M D G KGF F+ +A +A+ +++ ++ L + +SV A KK +
Sbjct: 269 VMTDAQ-GKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSER 321
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 205 (77.2 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 44/123 (35%), Positives = 75/123 (60%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L + V+E L++ F GPV+++ + +D ++ GYG++ F+ DA A++
Sbjct: 10 ASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALE 69
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GK IR+ ++ + + +G N+FI NLD +D K LY+ FS FG I+ +
Sbjct: 70 TMNFDLIKGKSIRLMWSQRDACLRKSGIG-NVFIKNLDKSIDNKTLYEHFSPFGKIMSS- 127
Query: 153 KIM 155
K+M
Sbjct: 128 KVM 130
Score = 117 (46.2 bits), Expect = 0.00023, P = 0.00023
Identities = 48/189 (25%), Positives = 87/189 (46%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ +++ LD + ++E F G +++ + D + +GYGF+ + +
Sbjct: 94 KSGIGN--VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDE--EGSKGYGFVHYQDQRA 149
Query: 89 ADYAIKIMN--MIK---LYGKPIRVNK---ASSHQKNLDVGANIFIGNLDPEVDEKLLYD 140
AD AI+ MN +++ L+ + K A +K + N++I N ++D++ L
Sbjct: 150 ADRAIEEMNGKLLRDSTLFVARFKSRKDREAELREKPAEF-TNVYIKNFGDDMDDESLRS 208
Query: 141 TFSAFGVILQTPKIMNMIKLYGKPIRVNKAS--SHQ--KNL-------DV-GANIFIGNL 188
FS +G QT + M GK R S SH+ KN D+ G IF+G
Sbjct: 209 VFSKYG---QTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRA 265
Query: 189 DPEIMRDPD 197
++ R +
Sbjct: 266 QKKVERQAE 274
Score = 79 (32.9 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS-YAFKKDSKGDR 246
+ ++M D + SKG+ F++Y A+D +I+ M+G+ L + + V+ + +KD + +
Sbjct: 125 MSSKVMTDEE--GSKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAEL 182
Query: 247 HGSAAE 252
AE
Sbjct: 183 REKPAE 188
Score = 74 (31.1 bits), Expect = 4.4e-21, Sum P(2) = 4.4e-21
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
L ++M+D +G SK F F+++ S +A+ +++ M+G+ + + I V A KK
Sbjct: 217 LSVKVMKDA-SGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKK 268
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 202 (76.2 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 47/135 (34%), Positives = 74/135 (54%)
Query: 21 QTKLEGGGESG---DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG 77
Q + G ES + A++YVG L+ VSE ++++F G V ++ + +D +T+T G
Sbjct: 21 QKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLG 80
Query: 78 YGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNLDPEVDEK 136
Y ++ F E AI+ +N + G+ R+ + G+ NIFI NL P++D K
Sbjct: 81 YAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNK 140
Query: 137 LLYDTFSAFGVILQT 151
LYDTFS FG IL +
Sbjct: 141 ALYDTFSVFGDILSS 155
Score = 94 (38.1 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 27/124 (21%), Positives = 58/124 (46%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ L + +++ F G +++ + D ++ +G+GF+ F E A A
Sbjct: 124 GSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKS-KGFGFVHFEEEGAAKEA 182
Query: 93 IKIMNMIKLYGKPI-------RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
I +N + L G+ I R + S ++ N+++ N++ E ++ + F+ F
Sbjct: 183 IDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKF 242
Query: 146 GVIL 149
G I+
Sbjct: 243 GPIV 246
Score = 87 (35.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 33/140 (23%), Positives = 66/140 (47%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDR---------VT-QTHQ-GYGFIEFMG 85
+YV ++ + ++ ELF + GP+V+ + KD V + H+ +E +
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Query: 86 EEDAD----YAIKI------MNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDE 135
+ + + Y + M+++K + R+ K + +Q G N+F+ NLD VD+
Sbjct: 281 DSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ-----GVNLFVKNLDDSVDD 335
Query: 136 KLLYDTFSAFGVILQTPKIM 155
+ L + F+ +G I K+M
Sbjct: 336 EKLEEEFAPYGTITSA-KVM 354
Score = 76 (31.8 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
++MR + G SKGF F+ +++ E + +I + Q + +P+ V+ A +KD
Sbjct: 352 KVMRT-ENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKD 401
Score = 75 (31.5 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 182 NIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235
++F L +I D + G SKGF F+++ A+ +IDA++G L + I V+
Sbjct: 147 SVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA 199
Score = 72 (30.4 bits), Expect = 8.2e-19, Sum P(2) = 8.2e-19
Identities = 22/84 (26%), Positives = 42/84 (50%)
Query: 160 LYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASI 219
LY K +N ++ ++ ++ A F + + +D D G KGF F+NY E + ++
Sbjct: 221 LYVK--NINSETTDEQFQELFAK-FGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAV 276
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+A++ L + V A KK+ +
Sbjct: 277 EALNDSELNGEKLYVGRAQKKNER 300
Score = 47 (21.6 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 155 MNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
M+++K + R+ K + +Q G N+F+ NLD +
Sbjct: 301 MHVLKKQYEAYRLEKMAKYQ-----GVNLFVKNLDDSV 333
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 202 (76.2 bits), Expect = 3.7e-21, Sum P(3) = 3.7e-21
Identities = 46/128 (35%), Positives = 75/128 (58%)
Query: 26 GGGESGDGDA--TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
GGG+ A ++YVG LD V+++ +++ F + VV+V + +D T T GYG++ +
Sbjct: 35 GGGDGVTHGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNY 94
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKAS--SHQKNLDVGANIFIGNLDPEVDEKLLYDT 141
+DA+ A++ +N L GK IR+ +S S + VG N+F+ NLD VD K L++
Sbjct: 95 SNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVG-NLFVKNLDKSVDNKTLHEA 153
Query: 142 FSAFGVIL 149
FS G I+
Sbjct: 154 FSGCGTIV 161
Score = 114 (45.2 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 33/122 (27%), Positives = 58/122 (47%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G ++V LD V + E F G +V+ + D + Q+ +GYGF++F E+ A A
Sbjct: 132 GVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQS-RGYGFVQFDTEDSAKNA 190
Query: 93 I-----KIMNMIKLYGKP-IRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFG 146
I K++N +++ P +R + S + N+++ NL + L TF +G
Sbjct: 191 IEKLNGKVLNDKQIFVGPFLRKEERESAADKMKF-TNVYVKNLSEATTDDELKTTFGQYG 249
Query: 147 VI 148
I
Sbjct: 250 SI 251
Score = 83 (34.3 bits), Expect = 3.7e-21, Sum P(3) = 3.7e-21
Identities = 19/55 (34%), Positives = 38/55 (69%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDAS--IDAMHGQYLCNRPISVSYAFKKDSK 243
++MRDP +G SKG F+ +++ AS+AS ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 358 KVMRDP-SGTSKGSGFVAFSA--ASEASRVLNEMNGKMVGGKPLYVALAQRKEER 409
Score = 71 (30.1 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 192 IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+MRD D G S+ F F+N+ + E + +++A++G+ ++ V A KK +
Sbjct: 256 VMRDGD-GKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSER 306
Score = 61 (26.5 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 13/56 (23%), Positives = 34/56 (60%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERL 254
G S+G+ F+ + + +++ +I+ ++G+ L ++ I V +K+ + SAA+++
Sbjct: 171 GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERE----SAADKM 222
Score = 40 (19.1 bits), Expect = 3.7e-21, Sum P(3) = 3.7e-21
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 166 RVNKASSHQKNLDVGANIFIGNLDPEI 192
R + SS N G N+++ NLD +
Sbjct: 313 RYEQGSSDGGNKFDGLNLYVKNLDDTV 339
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 201 (75.8 bits), Expect = 7.0e-21, Sum P(3) = 7.0e-21
Identities = 42/116 (36%), Positives = 66/116 (56%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG LD V+E +++ELF G V ++ + +D VT+ GY ++ + + A+
Sbjct: 42 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALD 101
Query: 95 IMNMIKLYGKPIRVNKASSHQKNLDVG-ANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
+N + GKP R+ + G N+FI NLD +D K L+DTF+AFG IL
Sbjct: 102 ELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL 157
Score = 127 (49.8 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 33/123 (26%), Positives = 61/123 (49%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +++ LD + + + F G +++ + +D + +GYGF+ + E A+ A
Sbjct: 128 GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVS-KGYGFVHYETAEAANNA 186
Query: 93 IKIMNMIKLYGKPI----RVNKASSHQKNLDVGAN---IFIGNLDPEVDEKLLYDTFSAF 145
IK +N + L K + ++K K ++ AN I+I N+DPEV+++ F F
Sbjct: 187 IKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKF 246
Query: 146 GVI 148
G I
Sbjct: 247 GEI 249
Score = 104 (41.7 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 42/172 (24%), Positives = 80/172 (46%)
Query: 107 RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLY-GKPI 165
R+ KAS +Q G N+++ NL +VD+ L + F +G I + + + P
Sbjct: 316 RMEKASKYQ-----GVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPE 370
Query: 166 RVNKASSHQKNLDVGANIFIGNLDP-----------EIMRDPDT---GNSKGFAFINYAS 211
K S++++N + A G +P E + P+ G SKGF F+ ++S
Sbjct: 371 SETKESANKEN-EKAAE---GEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSS 426
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPLSQ 263
+ + ++ M+ + + +P+ V+ A +KD + S E + A+N + Q
Sbjct: 427 PDEASKAVTEMNQRMVNGKPLYVALAQRKDVRR----SQLEASIQARNNIRQ 474
Score = 89 (36.4 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 20/81 (24%), Positives = 44/81 (54%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
IY+ +D +V + +LF + G + + + +D ++ +G+GF+ F E A A++ M
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKS-RGFGFVNFSTHESAQAAVEEM 283
Query: 97 NMIKLYGKPIRVNKASS-HQK 116
N ++ + + V +A H++
Sbjct: 284 NDKEVRSQKLYVGRAQKKHER 304
Score = 80 (33.2 bits), Expect = 7.0e-21, Sum P(3) = 7.0e-21
Identities = 15/52 (28%), Positives = 34/52 (65%)
Query: 192 IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ RD + G S+GF F+N+++ E++ A+++ M+ + + ++ + V A KK +
Sbjct: 254 LSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHER 304
Score = 74 (31.1 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 186 GN-LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF-KKD 241
GN L ++ +D + G SKG+ F++Y + EA++ +I ++G L ++ + V + KKD
Sbjct: 154 GNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKD 210
Score = 45 (20.9 bits), Expect = 7.0e-21, Sum P(3) = 7.0e-21
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 146 GVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEI 192
G++L K+ + K R +K + N NI+I N+DPE+
Sbjct: 192 GMLLNDKKVFVGHHI-SKKDRQSKFEEMKANF---TNIYIKNIDPEV 234
>SGD|S000005846 [details] [associations]
symbol:HSH49 "U2-snRNP associated splicing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP;IPI] [GO:0071004 "U2-type
prespliceosome" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000005846 EMBL:BK006948 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0000398 GO:GO:0005686 GO:GO:0071004 EMBL:X90565
GeneTree:ENSGT00690000101901 EMBL:Z75227 EMBL:AY558437 PIR:S58329
RefSeq:NP_014964.1 ProteinModelPortal:Q99181 SMR:Q99181
DIP:DIP-930N IntAct:Q99181 MINT:MINT-391267 STRING:Q99181
PaxDb:Q99181 PeptideAtlas:Q99181 EnsemblFungi:YOR319W GeneID:854497
KEGG:sce:YOR319W CYGD:YOR319w eggNOG:NOG282907 HOGENOM:HOG000200535
KO:K12831 OMA:QEATVYL OrthoDB:EOG4Q886Z NextBio:976831
Genevestigator:Q99181 GermOnline:YOR319W Uniprot:Q99181
Length = 213
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 51/137 (37%), Positives = 81/137 (59%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
S D T+YVG +D ++++ ++ELF+Q PV+ + PKD+V Q +QGY FIEF + DA
Sbjct: 4 SADSGNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDA 63
Query: 90 DYAIKIMN-MIKLYGKPIRVNKASSHQKNLDVGANI-----------FIGNLDPEVDEKL 137
YAIKIMN ++LY + I+V + ++ ++ +NI FI NL +D
Sbjct: 64 QYAIKIMNNTVRLYDRLIKVRQVTNSTGTTNLPSNISKDMILPIAKLFIKNLADSIDSDQ 123
Query: 138 LYDTFSAFGVILQTPKI 154
L F+ FG +++ P+I
Sbjct: 124 LVKIFNKFGKLIREPEI 140
Score = 112 (44.5 bits), Expect = 0.00024, P = 0.00024
Identities = 37/146 (25%), Positives = 71/146 (48%)
Query: 125 FIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNK------ASSHQKNL- 177
F D + K++ +T + +++ ++ N P ++K A KNL
Sbjct: 57 FYNQGDAQYAIKIMNNTVRLYDRLIKVRQVTNSTGTTNLPSNISKDMILPIAKLFIKNLA 116
Query: 178 ---DVGANIFIGNLDPEIMRDPDT---GNSK-GFAFINYASFEASDASIDAMHGQYLCNR 230
D + I N +++R+P+ N K A++ + FE +D +I +++ Q + N
Sbjct: 117 DSIDSDQLVKIFNKFGKLIREPEIFYLSNGKLKCAYVYFEDFEKADLAIKSLNNQLVANN 176
Query: 231 PISVSYAFKKDSKGD-RHGSAAERLL 255
I+V YAFK++ KG+ ++G +RLL
Sbjct: 177 RITVDYAFKENGKGNAKYGDDVDRLL 202
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 250 (93.1 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 80/250 (32%), Positives = 123/250 (49%)
Query: 12 STPCLQSLSQTKLEGGGESGD-GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDR 70
ST + S T GG + G+ ++YVG LD V+++ +++ F Q G VV V + +D
Sbjct: 14 STAAVTSAPATS--GGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDL 71
Query: 71 VTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGA-NIFIGNL 129
VT+ GYG++ F +DA AI+ +N I LYGKPIRV + GA NIFI NL
Sbjct: 72 VTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNL 131
Query: 130 DPEVDEKLLYDTFSAFGVILQTPKIMN---MIKLYGKPIRVNKASSHQKNLDVGANIFIG 186
D +D K L+DTFS+FG I+ ++ K YG N+ S+ QK ++ + +
Sbjct: 132 DESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESA-QKAIEKLNGMLLN 190
Query: 187 N----LDPEIMRDP--DTGNSKGFA--FINYASFEASDASIDAMHGQYLCNRPISVSYAF 238
+ + P + R T N F ++ + +D + G+Y I+ S
Sbjct: 191 DKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEY---GKIT-SAVV 246
Query: 239 KKDSKGDRHG 248
KD +G G
Sbjct: 247 MKDGEGKSKG 256
Score = 84 (34.6 bits), Expect = 7.0e-07, Sum P(3) = 7.0e-07
Identities = 16/53 (30%), Positives = 35/53 (66%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++MRDP+ G SKG F+ +A+ E + ++ + G+ + ++P+ V+ A +K+ +
Sbjct: 348 KVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDR 399
Score = 72 (30.4 bits), Expect = 7.0e-07, Sum P(3) = 7.0e-07
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV L + ++ + F + G + + + KD ++ +G+GF+ F +DA A++ +
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKS-KGFGFVNFENADDAARAVESL 275
Query: 97 NMIKLYGKPIRVNKA 111
N K K V +A
Sbjct: 276 NGHKFDDKEWYVGRA 290
Score = 71 (30.1 bits), Expect = 7.0e-07, Sum P(3) = 7.0e-07
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
+N+++ NLDP + ++ L + FS FG + + K+M
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSS-KVM 350
Score = 40 (19.1 bits), Expect = 0.00081, Sum P(3) = 0.00081
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 181 ANIFIGNLDPEI 192
+N+++ NLDP I
Sbjct: 318 SNLYVKNLDPSI 329
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 248 (92.4 bits), Expect = 3.4e-20, P = 3.4e-20
Identities = 69/227 (30%), Positives = 111/227 (48%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYG-----KPIRVNKASSHQKNLDVG-ANIFIGNLDPEIMRDPDTG-NSKG 203
+ N K Y NKA + + +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 204 FAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
F + +F E D ++ + Q+ + +SV +D G G
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQF--GKTLSVKVM--RDCSGKSKG 232
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 248 (92.4 bits), Expect = 3.8e-20, P = 3.8e-20
Identities = 69/227 (30%), Positives = 111/227 (48%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYG-----KPIRVNKASSHQKNLDVG-ANIFIGNLDPEIMRDPDTG-NSKG 203
+ N K Y NKA + + +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 204 FAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
F + +F E D ++ + Q+ + +SV +D G G
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQF--GKTLSVKVM--RDCSGKSKG 232
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 247 (92.0 bits), Expect = 4.1e-20, P = 4.1e-20
Identities = 69/227 (30%), Positives = 111/227 (48%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYG-----KPIRVNKASSHQKNLDVG-ANIFIGNLDPEIMRDPDTG-NSKG 203
+ N K Y +KA + + +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 204 FAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
F + +F E D S+ + Q+ + +SV +D G G
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQF--GKTLSVKVM--RDPNGKSKG 232
Score = 104 (41.7 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 29/108 (26%), Positives = 60/108 (55%)
Query: 17 QSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQ 76
+S + + E G ++ + +Y+ ++V + + ELF Q G ++V + +D ++ +
Sbjct: 174 KSRKEREAELGAKAKEF-TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS-K 231
Query: 77 GYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 124
G+GF+ + EDA+ A++ MN ++ GK I V +A QK ++ A +
Sbjct: 232 GFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA---QKKVERQAEL 276
Score = 79 (32.9 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 14/47 (29%), Positives = 31/47 (65%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 37 (18.1 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 180 GANIFIGNLDPEI 192
G N++I NLD I
Sbjct: 293 GVNLYIKNLDDTI 305
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 247 (92.0 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 69/227 (30%), Positives = 111/227 (48%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYG-----KPIRVNKASSHQKNLDVG-ANIFIGNLDPEIMRDPDTG-NSKG 203
+ N K Y +KA + + +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 204 FAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
F + +F E D S+ + Q+ + +SV +D G G
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQF--GKTLSVKVM--RDPSGKSKG 232
Score = 106 (42.4 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 29/108 (26%), Positives = 60/108 (55%)
Query: 17 QSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQ 76
+S + + E G ++ + +Y+ ++V + + ELF Q G ++V + +D ++ +
Sbjct: 174 KSRKEREAELGAKAKEF-TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS-K 231
Query: 77 GYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 124
G+GF+ + EDA+ A++ MN ++ GK I V +A QK ++ A +
Sbjct: 232 GFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA---QKKVERQAEL 276
Score = 79 (32.9 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 14/47 (29%), Positives = 31/47 (65%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 180 GANIFIGNLDPEI 192
G N++I NLD I
Sbjct: 293 GVNLYIKNLDDTI 305
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 247 (92.0 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 71/244 (29%), Positives = 120/244 (49%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+P+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYGKPIRVNKASSHQKNLDV--GA-----NIFIGNLDPEIMRDPDTG-NSK 202
+ N K YG + + ++ +D G +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYGF-VHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 188
Query: 203 GFAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA-ERLLAAQN 259
F + +F + +D + M G+Y +SV + K G + ER AQ
Sbjct: 189 EFTNVYIKNFGDDMNDERLKEMFGKY--GPALSVKVMTDDNGKSKGFGFVSFERHEDAQK 246
Query: 260 PLSQ 263
+ +
Sbjct: 247 AVDE 250
Score = 97 (39.2 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D +++ + E+F + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPIRVNKA 111
N + GK + V +A
Sbjct: 252 NGKDMNGKSMFVGRA 266
Score = 80 (33.2 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 63 (27.2 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L F FG I K+M
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFLPFGTITSA-KVM 326
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 247 (92.0 bits), Expect = 4.6e-20, P = 4.6e-20
Identities = 69/227 (30%), Positives = 111/227 (48%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYG-----KPIRVNKASSHQKNLDVG-ANIFIGNLDPEIMRDPDTG-NSKG 203
+ N K Y +KA + + +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 204 FAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
F + +F E D S+ + Q+ + +SV +D G G
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQF--GKTLSVKVM--RDPNGKSKG 232
Score = 104 (41.7 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 29/108 (26%), Positives = 60/108 (55%)
Query: 17 QSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQ 76
+S + + E G ++ + +Y+ ++V + + ELF Q G ++V + +D ++ +
Sbjct: 174 KSRKEREAELGAKAKEF-TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS-K 231
Query: 77 GYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 124
G+GF+ + EDA+ A++ MN ++ GK I V +A QK ++ A +
Sbjct: 232 GFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA---QKKVERQAEL 276
Score = 79 (32.9 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 14/47 (29%), Positives = 31/47 (65%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 37 (18.1 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 180 GANIFIGNLDPEI 192
G N++I NLD I
Sbjct: 293 GVNLYIKNLDDTI 305
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 245 (91.3 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 64/206 (31%), Positives = 105/206 (50%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYGKPIRVNKASSHQKNLDV--GA-----NIFIGNLDPEIMRDPDTG-NSK 202
+ N K YG + + ++ +D G +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYGF-VHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 188
Query: 203 GFAFINYASF--EASDASIDAMHGQY 226
F + +F + D + GQY
Sbjct: 189 EFTNVYIKNFGEDMDDERLKEWFGQY 214
Score = 123 (48.4 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 35/134 (26%), Positives = 68/134 (50%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ I++ LD + +++ F G +++ + D +GYGF+ F +E
Sbjct: 95 KSGVGN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEA 150
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGNLDPEVDEKLLYDT 141
A+ AI MN + L + + V + S ++ ++GA N++I N ++D++ L +
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEW 210
Query: 142 FSAFGVILQTPKIM 155
F +G L K+M
Sbjct: 211 FGQYGAALSV-KVM 223
Score = 89 (36.4 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + E F Q G ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKS-RGFGFVSFERHEDAQKAVDDM 251
Query: 97 NMIKLYGKPIRVNKA 111
N L GK I V +A
Sbjct: 252 NGKDLNGKAIFVGRA 266
Score = 83 (34.3 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
L ++M D D G S+GF F+++ E + ++D M+G+ L + I V A KK
Sbjct: 218 LSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKK 269
Score = 80 (33.2 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 64 (27.6 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L F+ FG I K+M
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFTPFGSITSA-KVM 326
>UNIPROTKB|B1ANR1 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000217922 EMBL:AL845289 UniGene:Hs.169900 HGNC:HGNC:8557
ChiTaRS:PABPC4 IPI:IPI00644016 SMR:B1ANR1 STRING:B1ANR1
Ensembl:ENST00000451091 Uniprot:B1ANR1
Length = 129
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 48/117 (41%), Positives = 73/117 (62%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNIL 126
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 244 (91.0 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 68/227 (29%), Positives = 111/227 (48%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYG-----KPIRVNKASSHQKNLDVG-ANIFIGNLDPEIMRDPDTG-NSKG 203
+ N K Y +KA + + +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 204 FAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
F + +F E D ++ + Q+ + +SV +D G G
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQF--GKTLSVKVM--RDPSGKSKG 232
Score = 105 (42.0 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 29/108 (26%), Positives = 60/108 (55%)
Query: 17 QSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQ 76
+S + + E G ++ + +Y+ ++V + + ELF Q G ++V + +D ++ +
Sbjct: 174 KSRKEREAELGAKAKEF-TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS-K 231
Query: 77 GYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 124
G+GF+ + EDA+ A++ MN ++ GK I V +A QK ++ A +
Sbjct: 232 GFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA---QKKVERQAEL 276
Score = 79 (32.9 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 14/47 (29%), Positives = 31/47 (65%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 37 (18.1 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 180 GANIFIGNLDPEI 192
G N++I NLD I
Sbjct: 293 GVNLYIKNLDDTI 305
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 244 (91.0 bits), Expect = 9.7e-20, P = 9.7e-20
Identities = 68/227 (29%), Positives = 111/227 (48%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GPV+++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYG-----KPIRVNKASSHQKNLDVG-ANIFIGNLDPEIMRDPDTG-NSKG 203
+ N K Y +KA + + +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 204 FAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
F + +F E D ++ + Q+ + +SV +D G G
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQF--GKTLSVKVM--RDPSGKSKG 232
Score = 105 (42.0 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 29/108 (26%), Positives = 60/108 (55%)
Query: 17 QSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQ 76
+S + + E G ++ + +Y+ ++V + + ELF Q G ++V + +D ++ +
Sbjct: 174 KSRKEREAELGAKAKEF-TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS-K 231
Query: 77 GYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 124
G+GF+ + EDA+ A++ MN ++ GK I V +A QK ++ A +
Sbjct: 232 GFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRA---QKKVERQAEL 276
Score = 79 (32.9 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 14/47 (29%), Positives = 31/47 (65%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 37 (18.1 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 180 GANIFIGNLDPEI 192
G N++I NLD I
Sbjct: 293 GVNLYIKNLDDTI 305
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 244 (91.0 bits), Expect = 1.0e-19, P = 1.0e-19
Identities = 75/266 (28%), Positives = 130/266 (48%)
Query: 4 GREIQAGISTPCLQSLSQTKLEGG------GESGDGDATIYVGGLDDKVSETLMWELFVQ 57
G+ G++ P + G G + G ++YVG LD V+++ ++E F Q
Sbjct: 8 GQNANGGVAVPGAAAAEAAAAAAGAAAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQ 67
Query: 58 SGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN---KASSH 114
+G VV+V + +D T+ GYG++ + +DA A+ +N + L G+ IRV + S
Sbjct: 68 AGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSL 127
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMN---MIKLYGKPIRVNKAS 171
+K+ VG NIFI NLD +D K L++TFSAFG IL ++ K YG ++ +
Sbjct: 128 RKS-GVG-NIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGF-VQYDTDE 184
Query: 172 SHQKNLDV--GA-----NIFIGNLDPEIMRDPDTGNSKGFA--FINYASFEASDASIDAM 222
+ Q +D G +++G ++ RDP +G F ++ S SD ++ +
Sbjct: 185 AAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDP-SGEKVKFTNVYVKNLSESLSDEELNKV 243
Query: 223 HGQYLCNRPISVSYAFKKDSKGDRHG 248
G++ ++ S +D +G G
Sbjct: 244 FGEF----GVTTSCVIMRDGEGKSKG 265
Score = 85 (35.0 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 17/56 (30%), Positives = 36/56 (64%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
++MRDP +G S+G F+ +++ E + +I M+G+ + +P+ V+ A +K+ + R
Sbjct: 357 KVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKAR 411
Score = 69 (29.3 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 15/61 (24%), Positives = 34/61 (55%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YV L + +S+ + ++F + G + + +D ++ +G+GF+ F +DA A+ +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKS-KGFGFVNFENSDDAARAVDAL 284
Query: 97 N 97
N
Sbjct: 285 N 285
Score = 62 (26.9 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G+N+++ NLD V + L + F+ FG I K+M
Sbjct: 326 GSNLYVKNLDESVTDDKLREHFAPFGTITSC-KVM 359
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 47/117 (40%), Positives = 73/117 (62%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNIL 126
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 242 (90.2 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 71/243 (29%), Positives = 119/243 (48%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYG-KPIRVNKASSH--QKNLDVGAN---IFIGNLDPEIMRDPDTG-NSKG 203
+ N K YG +A+ +K + N +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 204 FAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA-ERLLAAQNP 260
F + +F + D + + G++ +SV + K G + ER AQ
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKF--GPALSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 261 LSQ 263
+ +
Sbjct: 248 VDE 250
Score = 105 (42.0 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ELF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPIRVNKA 111
N +L GK I V +A
Sbjct: 252 NGKELNGKQIYVGRA 266
Score = 80 (33.2 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 69 (29.3 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L FS FG I K+M
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSA-KVM 326
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 242 (90.2 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 71/243 (29%), Positives = 119/243 (48%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYG-KPIRVNKASSH--QKNLDVGAN---IFIGNLDPEIMRDPDTG-NSKG 203
+ N K YG +A+ +K + N +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 204 FAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA-ERLLAAQNP 260
F + +F + D + + G++ +SV + K G + ER AQ
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKF--GPALSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 261 LSQ 263
+ +
Sbjct: 248 VDE 250
Score = 105 (42.0 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ELF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPIRVNKA 111
N +L GK I V +A
Sbjct: 252 NGKELNGKQIYVGRA 266
Score = 80 (33.2 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 69 (29.3 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L FS FG I K+M
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSA-KVM 326
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 241 (89.9 bits), Expect = 1.7e-19, P = 1.7e-19
Identities = 71/243 (29%), Positives = 119/243 (48%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYG-KPIRVNKASSH--QKNLDVGAN---IFIGNLDPEIMRDPDTG-NSKG 203
+ N K YG +A+ +K + N +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 204 FAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA-ERLLAAQNP 260
F + +F + D + + G++ +SV + K G + ER AQ
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKF--GPALSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 261 LSQ 263
+ +
Sbjct: 248 VDE 250
Score = 102 (41.0 bits), Expect = 9.8e-06, Sum P(3) = 9.8e-06
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPIRVNKA 111
N +L GK I V +A
Sbjct: 252 NGKELNGKQIYVGRA 266
Score = 69 (29.3 bits), Expect = 9.8e-06, Sum P(3) = 9.8e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L FS FG I K+M
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSA-KVM 326
Score = 41 (19.5 bits), Expect = 9.8e-06, Sum P(3) = 9.8e-06
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 199 GNSKGFAFINYASFEASDASIDAM 222
G SKGF F+ + S+ AS+ A+
Sbjct: 330 GRSKGFGFVCF-SYMQRMASVRAV 352
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 67/243 (27%), Positives = 119/243 (48%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T Y ++ F +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIF+ NLD ++ K LYDT SAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 153 KIM--NMIKLYG-KPIRVNKASSHQ-KNLDV----GANIFIGNLDPEIMRDPDTG-NSKG 203
+ N K YG ++A+ K ++ G +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
Query: 204 FAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA-ERLLAAQNP 260
F + +F + D + + G++ +SV + K G + ER AQ
Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKF--GPALSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 261 LSQ 263
+ +
Sbjct: 248 VDE 250
Score = 136 (52.9 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 39/134 (29%), Positives = 70/134 (52%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ I+V LD ++ +++ G +++ ++ D +GYGF+ F E
Sbjct: 95 KSGVGN--IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEA 150
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGNLDPEVDEKLLYDT 141
A+ AIK MN + L G+ + V + S ++ ++GA N++I N ++D++ L D
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDL 210
Query: 142 FSAFGVILQTPKIM 155
F FG L K+M
Sbjct: 211 FGKFGPALSV-KVM 223
Score = 102 (41.0 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPIRVNKA 111
N +L GK I V +A
Sbjct: 252 NGKELNGKQIYVGRA 266
Score = 87 (35.7 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
L ++M D ++G SKGF F+++ E + ++D M+G+ L + I V A KK
Sbjct: 218 LSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 64 (27.6 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
N+++ NLD +D++ L FS FG I K+M
Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSA-KVM 326
Score = 42 (19.8 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 199 GNSKGFAFINYASFE 213
G SKGF F+ ++S E
Sbjct: 330 GRSKGFGFVCFSSPE 344
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 67/243 (27%), Positives = 119/243 (48%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T Y ++ F +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIF+ NLD ++ K LYDT SAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 153 KIM--NMIKLYG-KPIRVNKASSHQ-KNLDV----GANIFIGNLDPEIMRDPDTG-NSKG 203
+ N K YG ++A+ K ++ G +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
Query: 204 FAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA-ERLLAAQNP 260
F + +F + D + + G++ +SV + K G + ER AQ
Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKF--GPALSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 261 LSQ 263
+ +
Sbjct: 248 VDE 250
Score = 136 (52.9 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 39/134 (29%), Positives = 70/134 (52%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ I+V LD ++ +++ G +++ ++ D +GYGF+ F E
Sbjct: 95 KSGVGN--IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEA 150
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGNLDPEVDEKLLYDT 141
A+ AIK MN + L G+ + V + S ++ ++GA N++I N ++D++ L D
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDL 210
Query: 142 FSAFGVILQTPKIM 155
F FG L K+M
Sbjct: 211 FGKFGPALSV-KVM 223
Score = 72 (30.4 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQ 225
L ++M D ++G SKGF F+++ E + ++D M+G+
Sbjct: 218 LSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGK 254
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 241 (89.9 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 71/243 (29%), Positives = 119/243 (48%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYG-KPIRVNKASSH--QKNLDVGAN---IFIGNLDPEIMRDPDTG-NSKG 203
+ N K YG +A+ +K + N +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 204 FAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA-ERLLAAQNP 260
F + +F + D + + G++ +SV + K G + ER AQ
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKF--GPALSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 261 LSQ 263
+ +
Sbjct: 248 VDE 250
Score = 102 (41.0 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPIRVNKA 111
N +L GK I V +A
Sbjct: 252 NGKELNGKQIYVGRA 266
Score = 80 (33.2 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 69 (29.3 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L FS FG I K+M
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSA-KVM 326
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 241 (89.9 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 71/243 (29%), Positives = 119/243 (48%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYG-KPIRVNKASSH--QKNLDVGAN---IFIGNLDPEIMRDPDTG-NSKG 203
+ N K YG +A+ +K + N +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 204 FAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA-ERLLAAQNP 260
F + +F + D + + G++ +SV + K G + ER AQ
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKF--GPALSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 261 LSQ 263
+ +
Sbjct: 248 VDE 250
Score = 102 (41.0 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPIRVNKA 111
N +L GK I V +A
Sbjct: 252 NGKELNGKQIYVGRA 266
Score = 80 (33.2 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 69 (29.3 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L FS FG I K+M
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSA-KVM 326
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 241 (89.9 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 71/243 (29%), Positives = 119/243 (48%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYG-KPIRVNKASSH--QKNLDVGAN---IFIGNLDPEIMRDPDTG-NSKG 203
+ N K YG +A+ +K + N +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 204 FAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA-ERLLAAQNP 260
F + +F + D + + G++ +SV + K G + ER AQ
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKF--GPALSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 261 LSQ 263
+ +
Sbjct: 248 VDE 250
Score = 102 (41.0 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPIRVNKA 111
N +L GK I V +A
Sbjct: 252 NGKELNGKQIYVGRA 266
Score = 80 (33.2 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 69 (29.3 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L FS FG I K+M
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSA-KVM 326
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 241 (89.9 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 71/243 (29%), Positives = 119/243 (48%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYG-KPIRVNKASSH--QKNLDVGAN---IFIGNLDPEIMRDPDTG-NSKG 203
+ N K YG +A+ +K + N +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 204 FAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA-ERLLAAQNP 260
F + +F + D + + G++ +SV + K G + ER AQ
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKF--GPALSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 261 LSQ 263
+ +
Sbjct: 248 VDE 250
Score = 102 (41.0 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPIRVNKA 111
N +L GK I V +A
Sbjct: 252 NGKELNGKQIYVGRA 266
Score = 80 (33.2 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 69 (29.3 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L FS FG I K+M
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSA-KVM 326
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 241 (89.9 bits), Expect = 2.1e-19, P = 2.1e-19
Identities = 71/243 (29%), Positives = 119/243 (48%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYG-KPIRVNKASSH--QKNLDVGAN---IFIGNLDPEIMRDPDTG-NSKG 203
+ N K YG +A+ +K + N +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 204 FAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA-ERLLAAQNP 260
F + +F + D + + G++ +SV + K G + ER AQ
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKF--GPALSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 261 LSQ 263
+ +
Sbjct: 248 VDE 250
Score = 102 (41.0 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPIRVNKA 111
N +L GK I V +A
Sbjct: 252 NGKELNGKQIYVGRA 266
Score = 80 (33.2 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 69 (29.3 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L FS FG I K+M
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSA-KVM 326
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 178 (67.7 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 36/112 (32%), Positives = 65/112 (58%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++Y G + +V+E L+ E+F +GP+ + + + + YGF+ + A AI
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKL----IRKDKSSYGFVHYFDRRCASMAIMT 119
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAF 145
+N ++G+P++VN A + + D + NIF+G+L PEV + L+D+FSAF
Sbjct: 120 LNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAF 171
Score = 109 (43.4 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 23/79 (29%), Positives = 46/79 (58%)
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG-DRH 247
D +M D TG S+GF F+++ + + + +I+ M+G+++ +R I ++A K + G D+H
Sbjct: 180 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKH 239
Query: 248 GSAAERLLAAQNPLSQADR 266
S + ++ N S+ R
Sbjct: 240 SSDGKSVVELTNGSSEDGR 258
Score = 53 (23.7 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 19/81 (23%), Positives = 34/81 (41%)
Query: 165 IRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHG 224
+ V S LD+ +F L ++ + KGF F+ Y + + + +I +
Sbjct: 275 VYVGNLSPEVTQLDLH-RLFY-TLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNA 332
Query: 225 Q-YLCNRPISVSYAFKKDSKG 244
Q +L +R I S+ K G
Sbjct: 333 QPFLFSRQIRCSWGNKPTPSG 353
Score = 49 (22.3 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKL-YG 162
+++ GN+ +V E LL + F++ G I ++ K++ K YG
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPI-ESCKLIRKDKSSYG 103
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 180 (68.4 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 39/112 (34%), Positives = 64/112 (57%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG + +V+E L+ E+F +GPV + + + + YGF+ + A AI
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKL----IRKDKSSYGFVHYFDRRSAALAILS 115
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAF 145
+N L+G+PI+VN A + + D + NIF+G+L PEV + LY +FS F
Sbjct: 116 LNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVF 167
Score = 106 (42.4 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 20/64 (31%), Positives = 39/64 (60%)
Query: 182 NIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
++F D +M D TG S+GF F+++ + + + +I+ M+G++L +R I ++A K
Sbjct: 165 SVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGA 224
Query: 242 SKGD 245
+ GD
Sbjct: 225 TSGD 228
Score = 56 (24.8 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKL-YG 162
++++GN+ +V E LL + F++ G + ++ K++ K YG
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPV-ESSKLIRKDKSSYG 99
Score = 38 (18.4 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 5/10 (50%), Positives = 9/10 (90%)
Query: 183 IFIGNLDPEI 192
+++GNL PE+
Sbjct: 267 VYVGNLAPEV 276
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 192 (72.6 bits), Expect = 5.2e-19, Sum P(3) = 5.2e-19
Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+++YVG L +VSE ++E+F Q G V N+ + +D T+ Y ++ + DA+ A+
Sbjct: 10 SSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALD 69
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
+N + GK R+ ++ + VG N+FI NLD +D K LYDTFSAFG IL
Sbjct: 70 TLNNTPIRGKACRIMWSQRDPSLRKSGVG-NVFIKNLDKGIDHKALYDTFSAFGNIL 125
Score = 113 (44.8 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 32/122 (26%), Positives = 56/122 (45%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++ L + V + EL Q G + N+ + D ++ +G+GF F E A ++
Sbjct: 190 VFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKS-KGFGFANFESAEAAKNVVENE 248
Query: 97 NMIKLYGKPIRVNKASSH-QKNLDV---------GANIFIGNLDPEVDEKLLYDTFSAFG 146
N +GKPI +A ++ ++ G N++I N+D +D L + FS FG
Sbjct: 249 NGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFG 308
Query: 147 VI 148
I
Sbjct: 309 TI 310
Score = 100 (40.3 bits), Expect = 8.9e-07, Sum P(3) = 8.9e-07
Identities = 30/124 (24%), Positives = 62/124 (50%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ +++ LD + +++ F G +++ + D + +G+GF+ + +E
Sbjct: 94 KSGVGN--VFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSS-KGFGFVHYETQES 150
Query: 89 ADYAIKIMNMIKLYGKPIRVN--KASSHQ-KNLDVG-ANIFIGNLDPEVDEKLLYDTFSA 144
AD AI +N + + G+ + V K+S + + +V N+F NL +V L +
Sbjct: 151 ADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQ 210
Query: 145 FGVI 148
+G I
Sbjct: 211 YGEI 214
Score = 84 (34.6 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
Identities = 30/88 (34%), Positives = 42/88 (47%)
Query: 162 GKPIRVNKASSHQKNL--DVGANIF------IGNL-DPEIMRDPDTGNSKGFAFINYASF 212
G+P V + KNL DVG + G + + IM D D G SKGF F N+ S
Sbjct: 180 GQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESA 238
Query: 213 EASDASIDAMHGQYLCNRPISVSYAFKK 240
EA+ ++ +G+ +PI A KK
Sbjct: 239 EAAKNVVENENGKIFHGKPIYAGRAQKK 266
Score = 83 (34.3 bits), Expect = 5.2e-19, Sum P(3) = 5.2e-19
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 192 IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
+M+D SKGF F+ Y + + + ++ M+G+ + +P+ V+ A +KD
Sbjct: 315 VMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRKD 364
Score = 39 (18.8 bits), Expect = 5.2e-19, Sum P(3) = 5.2e-19
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 180 GANIFIGNLDPEIMRD 195
G N++I N+D I D
Sbjct: 283 GVNLYIKNIDDSIDND 298
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 237 (88.5 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 70/243 (28%), Positives = 118/243 (48%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L +E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYG-KPIRVNKASSH--QKNLDVGAN---IFIGNLDPEIMRDPDTG-NSKG 203
+ N K YG +A+ +K + N +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 204 FAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA-ERLLAAQNP 260
F + +F + D + + G++ +SV + K G + ER AQ
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKF--GPALSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 261 LSQ 263
+ +
Sbjct: 248 VDE 250
Score = 102 (41.0 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPIRVNKA 111
N +L GK I V +A
Sbjct: 252 NGKELNGKQIYVGRA 266
Score = 80 (33.2 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 69 (29.3 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L FS FG I K+M
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSA-KVM 326
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 236 (88.1 bits), Expect = 6.8e-19, P = 6.8e-19
Identities = 66/225 (29%), Positives = 111/225 (49%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+P+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYG-KPIRVNKASSH--QKNLDVGAN---IFIGNLDPEIMRDPDTG-NSKG 203
+ N K YG ++A+ +K + N +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKE 189
Query: 204 FAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
F + +F D + + + C ++S D G G
Sbjct: 190 FTNVYIKNF-GEDMDDEKLK-EIFCKYGPALSIRVMTDDSGKSKG 232
Score = 101 (40.6 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 23/95 (24%), Positives = 50/95 (52%)
Query: 17 QSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQ 76
+S + + E G + + +Y+ + + + + E+F + GP +++ + D ++ +
Sbjct: 174 KSRKEREAEMGARAKEF-TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKS-K 231
Query: 77 GYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111
G+GF+ F EDA A+ MN ++ GK + V +A
Sbjct: 232 GFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRA 266
Score = 80 (33.2 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 67 (28.6 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L FS FG I K+M
Sbjct: 293 GVNLYVKNLDDGLDDERLRKEFSPFGTITSA-KVM 326
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 232 (86.7 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 67/243 (27%), Positives = 119/243 (48%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T Y ++ F +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG NIF+ NLD ++ K LYDT SAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 153 KIM--NMIKLYG-KPIRVNKASSHQ-KNLDV----GANIFIGNLDPEIMRDPDTG-NSKG 203
+ N K YG ++A+ K ++ G +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
Query: 204 FAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA-ERLLAAQNP 260
F + +F + D + + G++ +SV + K G + ER AQ
Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKF--GPALSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 261 LSQ 263
+ +
Sbjct: 248 VDE 250
Score = 136 (52.9 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 39/134 (29%), Positives = 70/134 (52%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ I+V LD ++ +++ G +++ ++ D +GYGF+ F E
Sbjct: 95 KSGVGN--IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEA 150
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGNLDPEVDEKLLYDT 141
A+ AIK MN + L G+ + V + S ++ ++GA N++I N ++D++ L D
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDL 210
Query: 142 FSAFGVILQTPKIM 155
F FG L K+M
Sbjct: 211 FGKFGPALSV-KVM 223
Score = 102 (41.0 bits), Expect = 4.9e-09, Sum P(3) = 4.9e-09
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPIRVNKA 111
N +L GK I V +A
Sbjct: 252 NGKELNGKQIYVGRA 266
Score = 87 (35.7 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
L ++M D ++G SKGF F+++ E + ++D M+G+ L + I V A KK
Sbjct: 218 LSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 80 (33.2 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 64 (27.6 bits), Expect = 4.9e-09, Sum P(3) = 4.9e-09
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
N+++ NLD +D++ L FS FG I K+M
Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSA-KVM 326
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 168 (64.2 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 36/123 (29%), Positives = 68/123 (55%)
Query: 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
+ GG E+ D +YVG LD ++E ++ + F GP+ N+ + D+ + Y F+E+
Sbjct: 66 ITGGRETSD--RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEY 122
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKA-SSHQKNLDVGANIFIGNLDPEVDEKLLYDTF 142
DA+ A++ +N ++ +++N A S Q + D N+F+G+L+ VD++ L + F
Sbjct: 123 HQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF 182
Query: 143 SAF 145
F
Sbjct: 183 KDF 185
Score = 118 (46.6 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 26/88 (29%), Positives = 44/88 (50%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
S D ++VG L+ V + + F ++ H+ D T + +GYGF+ F ++DA
Sbjct: 157 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 216
Query: 90 DYAIKIMNMIKLYGKPIRVNKASSHQKN 117
A+ M L G+P+R+N A+ N
Sbjct: 217 QNAMDSMQGQDLNGRPLRINWAAKRDNN 244
Score = 112 (44.5 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 20/64 (31%), Positives = 40/64 (62%)
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
F L +M D TG+S+G+ F+++ S + + ++D+M GQ L RP+ +++A K+D+
Sbjct: 185 FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNN 244
Query: 244 GDRH 247
+ +
Sbjct: 245 NNNN 248
Score = 53 (23.7 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+++GNLD + E +L F G I KIM I K + HQ + ANI
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANI-KIM--IDKNNKNVNYAFVEYHQSH---DANI 130
Query: 184 FIGNLD 189
+ L+
Sbjct: 131 ALQTLN 136
Score = 41 (19.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 160 LYGKPIRVNKASSHQKN 176
L G+P+R+N A+ N
Sbjct: 228 LNGRPLRINWAAKRDNN 244
Score = 38 (18.4 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 125 FIGNLDPEVDEKLLYDTFSAFGVIL 149
+IGN+ E L F FG IL
Sbjct: 344 YIGNIPHFATEADLIPLFQNFGFIL 368
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 227 (85.0 bits), Expect = 6.4e-18, P = 6.4e-18
Identities = 68/243 (27%), Positives = 118/243 (48%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +G ++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+P+R+ ++ + VG NIFI NLD +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYG-KPIRVNKASSH--QKNLDVGAN---IFIGNLDPEIMRDPDTG-NSKG 203
+ N K YG +A+ +K + N +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 204 FAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA-ERLLAAQNP 260
F + +F + D + + +Y +S+ ++ K G + ER AQ
Sbjct: 190 FTNVYIKNFGEDMDDDKLKDIFSKY--GNAMSIRVMTDENGKSRGFGFVSFERHEDAQRA 247
Query: 261 LSQ 263
+ +
Sbjct: 248 VDE 250
Score = 87 (35.7 bits), Expect = 3.3e-08, Sum P(3) = 3.3e-08
Identities = 19/75 (25%), Positives = 41/75 (54%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ++F + G +++ + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKS-RGFGFVSFERHEDAQRAVDEM 251
Query: 97 NMIKLYGKPIRVNKA 111
N ++ GK I V +A
Sbjct: 252 NGKEMNGKLIYVGRA 266
Score = 84 (34.6 bits), Expect = 3.3e-08, Sum P(3) = 3.3e-08
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
D G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 328 DGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 69 (29.3 bits), Expect = 3.3e-08, Sum P(3) = 3.3e-08
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L FS FG I K+M
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSA-KVM 326
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 226 (84.6 bits), Expect = 8.0e-18, P = 8.0e-18
Identities = 68/243 (27%), Positives = 120/243 (49%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY + F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + GKP+R+ ++ + VG N+FI NL+ +D K LYDTFSAFG IL
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRRSGVG-NVFIKNLNKTIDNKALYDTFSAFGNILSCK 129
Query: 153 KIM--NMIKLYG-KPIRVNKASSH--QKNLDVGAN---IFIGNLDPEIMRDPDTGN-SKG 203
+ N K +G +A+ +K + N +F+G R+ + G +K
Sbjct: 130 VVCDENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKE 189
Query: 204 FAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA-ERLLAAQNP 260
F + +F D +++ + G++ + +SV + K G + ER AQ
Sbjct: 190 FTNVYIKNFGDRMDDKTLNGLFGRF--GQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKA 247
Query: 261 LSQ 263
+ +
Sbjct: 248 VDE 250
Score = 100 (40.3 bits), Expect = 6.5e-10, Sum P(3) = 6.5e-10
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ D++ + + LF + G V++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 193 VYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKS-KGFGFVSFERHEDAQKAVDEM 251
Query: 97 NMIKLYGKPIRVNKASSHQKNLD 119
N +L GK I V A QK +D
Sbjct: 252 NGKELNGKHIYVGPA---QKKVD 271
Score = 81 (33.6 bits), Expect = 6.5e-10, Sum P(3) = 6.5e-10
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEER 374
Score = 74 (31.1 bits), Expect = 6.5e-10, Sum P(3) = 6.5e-10
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L FS FG I T K+M
Sbjct: 293 GINLYVKNLDDGIDDERLQKEFSPFGTITST-KVM 326
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 49/155 (31%), Positives = 88/155 (56%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L +V+E++++E F +GP++++ + +D+VT+ GY ++ + DA A++
Sbjct: 2 ASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALE 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN + G+P+R+ ++ + VG N+FI NL +D K LY+ FSAFG IL
Sbjct: 62 TMNFDVINGRPVRIMWSQRDPSLRKSGVG-NVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
Query: 153 KIMNMI--KLYGKPIRVNKASSHQKNLDVGANIFI 185
+ K YG + K S ++ +D +F+
Sbjct: 121 VACDEKGPKGYGF-VHFQKQESAERAIDALNGMFL 154
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 48/155 (30%), Positives = 88/155 (56%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L +V+E +++E F +GP++++ + +D++T+ GY ++ + DA A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+N + G+P+R+ ++ + VG N+FI NL +D K LY+ FSAFG IL
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVG-NVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
Query: 153 KIMNMI--KLYGKPIRVNKASSHQKNLDVGANIFI 185
+ K YG + K S ++ +DV +F+
Sbjct: 121 VACDEKGPKGYGF-VHFQKQESAERAIDVMNGMFL 154
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 171 (65.3 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 37/112 (33%), Positives = 64/112 (57%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++YVG + +V+E L+ E+F +GPV + + + + YGF+ + A AI
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGPVESCKL----IRKEKSSYGFVHYFDRRSAGLAILS 110
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAF 145
+N L+G+PI+VN A + + D + NIF+G+L PEV + +L+ FS +
Sbjct: 111 LNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVY 162
Score = 100 (40.3 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 21/76 (27%), Positives = 45/76 (59%)
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG-DRH 247
D +M D TG S+GF F+++ + + + +ID + G++L +R I ++A K + G D+
Sbjct: 167 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQ 226
Query: 248 GSAAERLLAAQNPLSQ 263
S ++ ++ + +S+
Sbjct: 227 SSDSKSVVELTSGVSE 242
Score = 74 (31.1 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 155 MNMIKLYGKPIRVNKASSHQKNLDVGA--NIFIGNLDPEI 192
+N L+G+PI+VN A + + D + NIF+G+L PE+
Sbjct: 111 LNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEV 150
Score = 48 (22.0 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 187 NLDPEIMRDPDTGNSKGFAFINYASF-EASDA-SIDAMHGQYLCNRPISVSYAFKKDSKG 244
+L ++ + KGF F+ Y++ EA+ A + H YL R + S+ K G
Sbjct: 282 SLGAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHS-YLSGRQMKCSWGSKPTPAG 340
Score = 38 (18.4 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 5/10 (50%), Positives = 9/10 (90%)
Query: 183 IFIGNLDPEI 192
+++GNL PE+
Sbjct: 262 VYVGNLAPEV 271
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 47/155 (30%), Positives = 87/155 (56%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L +V+E +++E F +GP++++ + +D++T+ GY ++ + DA A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+N + G+P+R+ ++ + VG N+FI NL +D K LY+ FSAFG IL
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVG-NVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
Query: 153 KIMNMI--KLYGKPIRVNKASSHQKNLDVGANIFI 185
+ K YG + K S ++ +D +F+
Sbjct: 121 VACDEKGPKGYGF-VHFQKQESAERAIDAMNGMFL 154
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 47/155 (30%), Positives = 87/155 (56%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L +V+E +++E F +GP++++ + +D++T+ GY ++ + DA A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+N + G+P+R+ ++ + VG N+FI NL +D K LY+ FSAFG IL
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVG-NVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
Query: 153 KIMNMI--KLYGKPIRVNKASSHQKNLDVGANIFI 185
+ K YG + K S ++ +D +F+
Sbjct: 121 VACDEKGPKGYGF-VHFQKQESAERAIDAMNGMFL 154
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 47/155 (30%), Positives = 87/155 (56%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L +V+E +++E F +GP++++ + +D++T+ GY ++ + DA A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
+N + G+P+R+ ++ + VG N+FI NL +D K LY+ FSAFG IL
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVG-NVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
Query: 153 KIMNMI--KLYGKPIRVNKASSHQKNLDVGANIFI 185
+ K YG + K S ++ +D +F+
Sbjct: 121 VACDEKGPKGYGF-VHFQKQESAERAIDAMNGMFL 154
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 169 (64.5 bits), Expect = 9.1e-17, Sum P(2) = 9.1e-17
Identities = 44/125 (35%), Positives = 66/125 (52%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YVG L V+E L+ +LF Q GP N M D T + Y F+EF A A+
Sbjct: 4 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 61
Query: 96 MNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN K+ GK ++VN A SS +K+ ++F+G+L PE+ + + F+ FG I
Sbjct: 62 MNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR 121
Query: 153 KIMNM 157
+ +M
Sbjct: 122 VVKDM 126
Score = 102 (41.0 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++VG L +++ + F G + + + KD T +GYGF+ F + DA+ AI+ M
Sbjct: 93 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 152
Query: 97 NMIKLYGKPIRVNKAS 112
L G+ IR N A+
Sbjct: 153 GGQWLGGRQIRTNWAT 168
Score = 87 (35.7 bits), Expect = 9.1e-17, Sum P(2) = 9.1e-17
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F+++ + ++ +I M GQ+L R I ++A +K
Sbjct: 119 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 170
Score = 71 (30.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 155 MNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEI 192
MN K+ GK ++VN A SS +K+ ++F+G+L PEI
Sbjct: 62 MNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEI 102
Score = 50 (22.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + E+L+ TFS FG I++
Sbjct: 201 VYCGGVTSGLTEQLMRQTFSPFGQIME 227
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 158 (60.7 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 42/120 (35%), Positives = 63/120 (52%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D T+YVG L V+E L+ ++F Q GP + M D T + Y F+EF A
Sbjct: 6 DQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILD--TTGNDPYCFVEFYENRHAAA 63
Query: 92 AIKIMNMIKLYGKPIRVNKAS---SHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
A+ MN K+ GK ++VN AS S +K+ ++F+G+L PE+ + F+ FG I
Sbjct: 64 ALAAMNGRKILGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKI 123
Score = 114 (45.2 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 31/90 (34%), Positives = 49/90 (54%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++VG L ++S + F G + + + KD T +GYGFI F+ + DA+ AI+ M
Sbjct: 99 VFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQM 158
Query: 97 NMIKLYGKPIRVNKAS---SHQKNLDVGAN 123
N L G+ IR N A+ S K+ + GA+
Sbjct: 159 NGQWLGGRQIRTNWATRKPSAPKSNNEGAS 188
Score = 107 (42.7 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 24/78 (30%), Positives = 49/78 (62%)
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS--KGDR 246
D +++D TG SKG+ FI++ + ++++I M+GQ+L R I ++A +K S K +
Sbjct: 125 DARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNN 184
Query: 247 HGSAAERLLAAQNPLSQA 264
G++++ L + + L+Q+
Sbjct: 185 EGASSKHL-SYEEVLNQS 201
Score = 73 (30.8 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 155 MNMIKLYGKPIRVNKAS---SHQKNLDVGANIFIGNLDPEIMRD 195
MN K+ GK ++VN AS S +K+ ++F+G+L PEI D
Sbjct: 68 MNGRKILGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTD 111
Score = 48 (22.0 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + ++L+ TFS FG I++
Sbjct: 208 VYCGGIASGLSDQLMRQTFSPFGQIME 234
Score = 46 (21.3 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 16/67 (23%), Positives = 34/67 (50%)
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPL 261
KG++F+ + S E + +I +++G C +V + K++ R S + + QN
Sbjct: 241 KGYSFVRFDSHEGAAHAIVSVNGT--CIEGHTVKCYWGKETADMR--SMQQMPMPQQNKP 296
Query: 262 SQADRPH 268
+ A +P+
Sbjct: 297 TYAAQPY 303
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 169 (64.5 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 44/125 (35%), Positives = 66/125 (52%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YVG L V+E L+ +LF Q GP N M D T + Y F+EF A A+
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 96 MNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN K+ GK ++VN A SS +K+ ++F+G+L PE+ + + F+ FG I
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR 125
Query: 153 KIMNM 157
+ +M
Sbjct: 126 VVKDM 130
Score = 102 (41.0 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++VG L +++ + F G + + + KD T +GYGF+ F + DA+ AI+ M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 97 NMIKLYGKPIRVNKAS 112
L G+ IR N A+
Sbjct: 157 GGQWLGGRQIRTNWAT 172
Score = 87 (35.7 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F+++ + ++ +I M GQ+L R I ++A +K
Sbjct: 123 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 174
Score = 71 (30.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 155 MNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEI 192
MN K+ GK ++VN A SS +K+ ++F+G+L PEI
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEI 106
Score = 50 (22.7 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + E+L+ TFS FG I++
Sbjct: 205 VYCGGVTSGLTEQLMRQTFSPFGQIME 231
>UNIPROTKB|F1NGK7 [details] [associations]
symbol:RBM7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 OMA:DRHYSRE EMBL:AADN02041798
EMBL:AADN02041799 IPI:IPI00586092 ProteinModelPortal:F1NGK7
Ensembl:ENSGALT00000011352 Uniprot:F1NGK7
Length = 279
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 40/90 (44%), Positives = 59/90 (65%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
GG + + D T++VG LD KV+E L++ELF Q+GPV+ V +PKD+ + Q + F+ F E
Sbjct: 2 GGTAAEADRTLFVGNLDPKVTEELIFELFHQAGPVIKVKIPKDKDGKQKQ-FAFVSFKHE 60
Query: 87 EDADYAIKIMNMIKLYGKPIRVN--KASSH 114
E Y + ++N IKLYG+PI + SSH
Sbjct: 61 ESVPYGMNLLNGIKLYGRPINIQFRSGSSH 90
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 213 (80.0 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 62/229 (27%), Positives = 111/229 (48%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+++YVG L V+E +++E+F G ++++ + +D T+ GY +I F DA+ A+
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRVNKASSHQ----KNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
MN + G+PIR+ SH+ + +G NIFI NL+ +D K LYDTFS FG IL
Sbjct: 71 TMNFEMIKGQPIRI--MWSHRDPGLRRSGMG-NIFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 151 TPKIMNM--IKLYG-KPIRVNKASSHQKNLDVGA-----NIFIGNLDPEIMRDPDTG-NS 201
+ + N + +G ++A+ N G +F+G+ R+ + G +
Sbjct: 128 SKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARA 187
Query: 202 KGFA--FINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
GF ++ + + + + Q+ + + V +DS G G
Sbjct: 188 LGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVM----RDSNGQSRG 232
Score = 93 (37.8 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 30/93 (32%), Positives = 47/93 (50%)
Query: 20 SQTKLEGG-GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGY 78
S+ K E G G IYV L + E + +LF Q G +V + +D Q+ +G+
Sbjct: 175 SRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQS-RGF 233
Query: 79 GFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA 111
GFI F E+A A+ MN ++ G+ + V +A
Sbjct: 234 GFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRA 266
Score = 75 (31.5 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 13/47 (27%), Positives = 31/47 (65%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
++ +SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 328 ESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 374
Score = 75 (31.5 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 107 RVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
R + ++N G N+++ NLD +++ L + FS +GVI K+M
Sbjct: 279 RFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSA-KVM 326
Score = 44 (20.5 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 166 RVNKASSHQKNLDVGANIFIGNLDPEIMRD 195
R + ++N G N+++ NLD I D
Sbjct: 279 RFEQMKQERQNRYQGVNLYVKNLDDSINDD 308
>UNIPROTKB|E5RH24 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
Length = 118
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 40/109 (36%), Positives = 66/109 (60%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDT 141
MN + GKP+R+ ++ + VG NIFI NLD +D K LYDT
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDT 118
Score = 75 (31.5 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMI 158
A++++G+L P+V E +LY+ FS G IL +MI
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI 47
Score = 58 (25.5 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 155 MNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI 192
MN + GKP+R+ ++ + VG NIFI NLD I
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSI 110
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 165 (63.1 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 42/117 (35%), Positives = 65/117 (55%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YVG LD VSE L+ LF GPV + + ++ + Y FIE+ + A A+
Sbjct: 8 TLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIRE---PGNDPYAFIEYSNYQAATTALTA 64
Query: 96 MNMIKLYGKPIRVNKASS--HQKNLDVGAN--IFIGNLDPEVDEKLLYDTFSAFGVI 148
MN K I+VN A+S +Q D+ ++ IF+G+L PE++ + L + F+ FG I
Sbjct: 65 MNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEI 121
Score = 99 (39.9 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 18/49 (36%), Positives = 34/49 (69%)
Query: 192 IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
I+RDP T SKG+AF+++ ++ +I AM+GQ++ +R I +++ +K
Sbjct: 126 IVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRK 174
Score = 61 (26.5 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 155 MNMIKLYGKPIRVNKASS--HQKNLDVGAN--IFIGNLDPEI 192
MN K I+VN A+S +Q D+ ++ IF+G+L PEI
Sbjct: 65 MNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEI 106
Score = 52 (23.4 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 193 MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
++D KGF+FI + + EA+ +I+ H + + + K++ GD ++A
Sbjct: 248 IQDVRVFKDKGFSFIKFVTKEAAAHAIEHTHNSEVHGNLVKCFWG--KENGGD---NSAN 302
Query: 253 RLLAA 257
L AA
Sbjct: 303 NLNAA 307
>UNIPROTKB|F5GXV8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI00556348 ProteinModelPortal:F5GXV8 SMR:F5GXV8
Ensembl:ENST00000541475 ArrayExpress:F5GXV8 Bgee:F5GXV8
Uniprot:F5GXV8
Length = 149
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 43/110 (39%), Positives = 66/110 (60%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
G + + D T++VG L+ KV+E L++ELF Q+GPV+ V +PKD+ + Q + F+ F E
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNFKHE 60
Query: 87 EDADYAIKIMNMIKLYGKPIRVN--KASSHQKNLDVGANI---FIGNLDP 131
YA+ ++N IKLYG+PI++ SSH DV + +GN P
Sbjct: 61 VSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQ-DVSLSYPQHHVGNSSP 109
>UNIPROTKB|F5GY08 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01012450 ProteinModelPortal:F5GY08 SMR:F5GY08
Ensembl:ENST00000544582 ArrayExpress:F5GY08 Bgee:F5GY08
Uniprot:F5GY08
Length = 220
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 43/110 (39%), Positives = 66/110 (60%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
G + + D T++VG L+ KV+E L++ELF Q+GPV+ V +PKD+ + Q + F+ F E
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNFKHE 60
Query: 87 EDADYAIKIMNMIKLYGKPIRVN--KASSHQKNLDVGANI---FIGNLDP 131
YA+ ++N IKLYG+PI++ SSH DV + +GN P
Sbjct: 61 VSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQ-DVSLSYPQHHVGNSSP 109
>UNIPROTKB|J3KPD3 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471065 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:DRHYSRE UniGene:Hs.7527 HGNC:HGNC:9904 EMBL:AP002373
ProteinModelPortal:J3KPD3 Ensembl:ENST00000375490 Uniprot:J3KPD3
Length = 267
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 43/110 (39%), Positives = 66/110 (60%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
G + + D T++VG L+ KV+E L++ELF Q+GPV+ V +PKD+ + Q + F+ F E
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNFKHE 60
Query: 87 EDADYAIKIMNMIKLYGKPIRVN--KASSHQKNLDVGANI---FIGNLDP 131
YA+ ++N IKLYG+PI++ SSH DV + +GN P
Sbjct: 61 VSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQ-DVSLSYPQHHVGNSSP 109
>UNIPROTKB|Q9Y580 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007126 EMBL:CH471065 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 CTD:10179 eggNOG:NOG273605
HOGENOM:HOG000059553 HOVERGEN:HBG009324 KO:K13188 OrthoDB:EOG4W0XDN
EMBL:AF156098 EMBL:AK002015 EMBL:AK312619 EMBL:BC034381
IPI:IPI00001134 RefSeq:NP_057174.1 UniGene:Hs.7527
ProteinModelPortal:Q9Y580 SMR:Q9Y580 DIP:DIP-48833N IntAct:Q9Y580
MINT:MINT-1453692 STRING:Q9Y580 PhosphoSite:Q9Y580 DMDM:9978697
PRIDE:Q9Y580 DNASU:10179 Ensembl:ENST00000540163 GeneID:10179
KEGG:hsa:10179 UCSC:uc001pov.3 GeneCards:GC11P114305 HGNC:HGNC:9904
HPA:HPA013993 MIM:612413 neXtProt:NX_Q9Y580 PharmGKB:PA34269
PhylomeDB:Q9Y580 GenomeRNAi:10179 NextBio:38534 ArrayExpress:Q9Y580
Bgee:Q9Y580 CleanEx:HS_RBM7 Genevestigator:Q9Y580
GermOnline:ENSG00000076053 Uniprot:Q9Y580
Length = 266
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 43/110 (39%), Positives = 66/110 (60%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
G + + D T++VG L+ KV+E L++ELF Q+GPV+ V +PKD+ + Q + F+ F E
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNFKHE 60
Query: 87 EDADYAIKIMNMIKLYGKPIRVN--KASSHQKNLDVGANI---FIGNLDP 131
YA+ ++N IKLYG+PI++ SSH DV + +GN P
Sbjct: 61 VSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQ-DVSLSYPQHHVGNSSP 109
>MGI|MGI:1914260 [details] [associations]
symbol:Rbm7 "RNA binding motif protein 7" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007126 "meiosis"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1914260 GO:GO:0007126 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
CTD:10179 eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN EMBL:AF458961 EMBL:AK005200
EMBL:AK006755 EMBL:AK008645 EMBL:AK151056 EMBL:BC054774
IPI:IPI00133061 RefSeq:NP_659197.2 UniGene:Mm.76911
ProteinModelPortal:Q9CQT2 SMR:Q9CQT2 STRING:Q9CQT2
PhosphoSite:Q9CQT2 PaxDb:Q9CQT2 PRIDE:Q9CQT2
Ensembl:ENSMUST00000170000 GeneID:67010 KEGG:mmu:67010
InParanoid:Q9CQT2 NextBio:323298 Bgee:Q9CQT2 CleanEx:MM_RBM7
Genevestigator:Q9CQT2 GermOnline:ENSMUSG00000042396 Uniprot:Q9CQT2
Length = 265
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 42/110 (38%), Positives = 66/110 (60%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
G + + D T++VG L+ KV+E L++ELF Q+GPV+ V +PKD+ + Q + F+ F E
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQ-FAFVNFKHE 60
Query: 87 EDADYAIKIMNMIKLYGKPIRVN--KASSHQKNLDVGANI---FIGNLDP 131
YA+ ++N IKL+G+PI++ SSH D + +GNL P
Sbjct: 61 VSVPYAMNLLNGIKLFGRPIKIQFRSGSSHASQ-DASVSYPQHHVGNLSP 109
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 170 (64.9 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
Identities = 44/125 (35%), Positives = 66/125 (52%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YVG L V+E L+ +LF Q GP N M D T + Y F+EF A A+
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAASALAA 65
Query: 96 MNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN K+ GK ++VN A SS +K+ ++F+G+L PE+ + + F+ FG I
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR 125
Query: 153 KIMNM 157
+ +M
Sbjct: 126 VVKDM 130
Score = 102 (41.0 bits), Expect = 9.0e-05, Sum P(3) = 9.0e-05
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++VG L +++ + F G + + + KD T +GYGF+ F + DA+ AI+ M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 97 NMIKLYGKPIRVNKAS 112
L G+ IR N A+
Sbjct: 157 GGQWLGGRQIRTNWAT 172
Score = 87 (35.7 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F+++ + ++ +I M GQ+L R I ++A +K
Sbjct: 123 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 174
Score = 71 (30.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 155 MNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEI 192
MN K+ GK ++VN A SS +K+ ++F+G+L PEI
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEI 106
Score = 50 (22.7 bits), Expect = 9.0e-05, Sum P(3) = 9.0e-05
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + E+L+ TFS FG I++
Sbjct: 205 VYCGGVTSGLTEQLMRQTFSPFGQIME 231
Score = 42 (19.8 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 202 KGFAFINYASFEASDASIDAMHG 224
KG++F+ + S E++ +I +++G
Sbjct: 238 KGYSFVRFNSHESAAHAIVSVNG 260
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 162 (62.1 bits), Expect = 6.5e-16, Sum P(2) = 6.5e-16
Identities = 43/123 (34%), Positives = 64/123 (52%)
Query: 38 YVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMN 97
YVG L V+E L+ +LF Q GP N M D T + Y F+EF A A+ MN
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMN 59
Query: 98 MIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKI 154
K+ GK ++VN A SS +K+ ++F+G+L PE+ + + F+ FG I +
Sbjct: 60 GRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVV 119
Query: 155 MNM 157
+M
Sbjct: 120 KDM 122
Score = 55 (24.4 bits), Expect = 6.5e-16, Sum P(2) = 6.5e-16
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 189 DPEIMRDPDTGNSKGFAFINY 209
D +++D TG SKG+ F+++
Sbjct: 115 DARVVKDMATGKSKGYGFVSF 135
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 169 (64.5 bits), Expect = 7.1e-16, Sum P(2) = 7.1e-16
Identities = 44/125 (35%), Positives = 66/125 (52%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YVG L V+E L+ +LF Q GP N M D T + Y F+EF A A+
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 96 MNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN K+ GK ++VN A SS +K+ ++F+G+L PE+ + + F+ FG I
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR 125
Query: 153 KIMNM 157
+ +M
Sbjct: 126 VVKDM 130
Score = 102 (41.0 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++VG L +++ + F G + + + KD T +GYGF+ F + DA+ AI+ M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 97 NMIKLYGKPIRVNKAS 112
L G+ IR N A+
Sbjct: 157 GGQWLGGRQIRTNWAT 172
Score = 87 (35.7 bits), Expect = 7.1e-16, Sum P(2) = 7.1e-16
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F+++ + ++ +I M GQ+L R I ++A +K
Sbjct: 123 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 174
Score = 71 (30.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 155 MNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEI 192
MN K+ GK ++VN A SS +K+ ++F+G+L PEI
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEI 106
Score = 50 (22.7 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + E+L+ TFS FG I++
Sbjct: 205 VYCGGVTSGLTEQLMRQTFSPFGQIME 231
Score = 46 (21.3 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 8/23 (34%), Positives = 18/23 (78%)
Query: 202 KGFAFINYASFEASDASIDAMHG 224
KG++FI ++S E++ +I +++G
Sbjct: 238 KGYSFIRFSSHESAAHAIVSVNG 260
>RGD|1308017 [details] [associations]
symbol:Rbm7 "RNA binding motif protein 7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1308017 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 OMA:DRHYSRE IPI:IPI00215147
Ensembl:ENSRNOT00000007736 UCSC:RGD:1308017 ArrayExpress:F1M8F0
Uniprot:F1M8F0
Length = 265
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 42/110 (38%), Positives = 66/110 (60%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
G + + D T++VG L+ KV+E L++ELF Q+GPV+ V +PKD+ + Q + F+ F E
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQ-FAFVNFKHE 60
Query: 87 EDADYAIKIMNMIKLYGKPIRVN--KASSHQKNLDVGANI---FIGNLDP 131
YA+ ++N IKL+G+PI++ SSH D + +GNL P
Sbjct: 61 VSVPYAMNLLNGIKLFGRPIKIQFRSGSSHLSQ-DASTSYPQHHMGNLSP 109
>UNIPROTKB|Q3MHY8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9913 "Bos
taurus" [GO:0007126 "meiosis" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007126 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
EMBL:BC104518 IPI:IPI00690650 RefSeq:NP_001029659.1
UniGene:Bt.56272 ProteinModelPortal:Q3MHY8 SMR:Q3MHY8 PRIDE:Q3MHY8
Ensembl:ENSBTAT00000010804 GeneID:515307 KEGG:bta:515307 CTD:10179
eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
InParanoid:Q3MHY8 KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN
NextBio:20871760 Uniprot:Q3MHY8
Length = 262
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 40/109 (36%), Positives = 67/109 (61%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
G + + D T++VG L+ KV+E L++ELF Q+GPV+ V +PKD+ + Q + F+ F E
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNFKHE 60
Query: 87 EDADYAIKIMNMIKLYGKPIRVN-KASSHQKNLDVGANI---FIGNLDP 131
YA+ ++N IKL+G+PI++ +A S + +V + +GN P
Sbjct: 61 VSVPYAMNLLNGIKLFGRPIKIQFRAGSSHASQEVSLSYPQHHVGNSSP 109
>UNIPROTKB|I3L521 [details] [associations]
symbol:I3L521 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP002373
Ensembl:ENST00000544347 Uniprot:I3L521
Length = 148
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 42/107 (39%), Positives = 65/107 (60%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
+ + D T++VG L+ KV+E L++ELF Q+GPV+ V +PKD+ + Q + F+ F E
Sbjct: 2 AAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNFKHEVSV 60
Query: 90 DYAIKIMNMIKLYGKPIRVN--KASSHQKNLDVGANI---FIGNLDP 131
YA+ ++N IKLYG+PI++ SSH DV + +GN P
Sbjct: 61 PYAMNLLNGIKLYGRPIKIQFRSGSSHAPQ-DVSLSYPQHHVGNSSP 106
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 159 (61.0 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 40/113 (35%), Positives = 68/113 (60%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+++G L V E + F Q+G +V+V + ++++T +GYGFIEF+ A+ ++
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 96 MNMIKLYGKPI--RVNKAS--SHQKNLDVGAN--IFIGNLDPEVDEKLLYDTF 142
N ++ G + R+N AS S QK +D G + IF+G+L P+V + LL +TF
Sbjct: 85 YNGTQMPGTELTFRLNWASFGSGQK-VDAGPDHSIFVGDLAPDVTDYLLQETF 136
Score = 111 (44.1 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 31/98 (31%), Positives = 53/98 (54%)
Query: 26 GGGESGDG--DATIYVGGLDDKVSETLMWELF-VQSGPVVNVHMPKDRVTQTHQGYGFIE 82
G G+ D D +I+VG L V++ L+ E F V V + D T +GYGF++
Sbjct: 105 GSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVK 164
Query: 83 FMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDV 120
F E + + A+ MN + +P+R++ A++ +KN+ V
Sbjct: 165 FAEESERNRAMAEMNGLYCSTRPMRIS-AATPKKNVGV 201
Score = 98 (39.6 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
+++ DP TG SKG+ F+ +A + ++ M+G Y RP+ +S A K + G
Sbjct: 147 KVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVG 200
Score = 63 (27.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 114 HQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKP 164
H + L+ ++IG+L VDE L FS G ++ I N K+ G+P
Sbjct: 16 HPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRN--KITGQP 64
Score = 52 (23.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 6/37 (16%), Positives = 23/37 (62%)
Query: 201 SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
+KG+ ++ + + +++ ++ M GQ + + + +S++
Sbjct: 271 TKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWS 307
Score = 45 (20.9 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVIL 149
I + NLD V E+ L FS G ++
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVI 264
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 136 (52.9 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 32/69 (46%), Positives = 41/69 (59%)
Query: 83 FMGEEDADYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYD 140
F DA+ A+ MN + GKPIR+ ++ + VG N+FI NLD +D K LYD
Sbjct: 3 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYD 61
Query: 141 TFSAFGVIL 149
TFSAFG IL
Sbjct: 62 TFSAFGNIL 70
Score = 78 (32.5 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPI 232
D SKG+AF+++ + EA+D +I+ M+G L +R +
Sbjct: 77 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 112
Score = 58 (25.5 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 155 MNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEI 192
MN + GKPIR+ ++ + VG N+FI NLD I
Sbjct: 16 MNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSI 54
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 149 (57.5 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 40/124 (32%), Positives = 59/124 (47%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G D T+YVG LD V+E + LF Q G V + D ++ Y F+EF
Sbjct: 39 GNGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDG---SNDPYAFVEFSDHG 95
Query: 88 DADYAIKIMNMIKLYGKPIRVNKA---SSHQKNLDVGAN--IFIGNLDPEVDEKLLYDTF 142
A A++ MN L + ++VN A Q +D + +F+G+L EVD + L + F
Sbjct: 96 QASQALQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAF 155
Query: 143 SAFG 146
FG
Sbjct: 156 QPFG 159
Score = 107 (42.7 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 21/58 (36%), Positives = 38/58 (65%)
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
D +++RD +T SKG+ F++Y E ++ +I+ M+GQ+L R I ++A +K GD+
Sbjct: 163 DAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKP--GDQ 218
Score = 54 (24.1 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMN 156
D +++GNLD V E + F+ G + +T I +
Sbjct: 43 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD 80
Score = 40 (19.1 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGS 249
+G+AF+ + + +A+ +I M+ Q + + + S+ D+ GS
Sbjct: 275 QGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGDTGKTPGGS 322
>UNIPROTKB|E2QWQ0 [details] [associations]
symbol:RBM7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 CTD:10179 KO:K13188 OMA:DRHYSRE
EMBL:AAEX03003476 EMBL:AAEX03003477 RefSeq:XP_853905.2
Ensembl:ENSCAFT00000021445 GeneID:611169 KEGG:cfa:611169
Uniprot:E2QWQ0
Length = 262
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 43/110 (39%), Positives = 65/110 (59%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
G + + D T++VG L+ KV+E L++ELF Q+GPVV V +PKD+ + Q + F+ F E
Sbjct: 2 GAAAEEADRTLFVGNLETKVTEELLFELFHQAGPVVKVKIPKDKDGKPKQ-FAFVNFKHE 60
Query: 87 EDADYAIKIMNMIKLYGKPIRVN--KASSHQKNLDVGA---NIFIGNLDP 131
YA+ ++N IKL+G+PI++ SSH DV +GN P
Sbjct: 61 VSVPYAMNLLNGIKLFGRPIKIQFRSGSSHASQ-DVNLLYPQHHLGNSSP 109
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 148 (57.2 bits), Expect = 3.6e-15, Sum P(3) = 3.6e-15
Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 95 IMNMIKLYGKPIRV 108
MN + GKP+R+
Sbjct: 71 TMNFDVIKGKPVRI 84
Score = 123 (48.4 bits), Expect = 0.00010, P = 0.00010
Identities = 40/148 (27%), Positives = 72/148 (48%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKL---------YGKPIRVNKASS 172
A++++G+L P+V E +LY+ FS G IL +MI + +P +A
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 HQKNLDV--GANIFI--GNLDPEIMRDP---DTGNSKGFAFINYASFEASDASIDAMHGQ 225
N DV G + I DP + + D SKG+ F+++ + EA++ +I+ M+G
Sbjct: 71 TM-NFDVIKGKPVRIMWSQRDPSLRKSGVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 129
Query: 226 YLCNRPISVS-YAFKKDSKGDRHGSAAE 252
L +R + V + +K+ + + A E
Sbjct: 130 LLNDRKVFVGRFKSRKEREAELGARAKE 157
Score = 108 (43.1 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 28/87 (32%), Positives = 48/87 (55%)
Query: 76 QGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGN 128
+GYGF+ F +E A+ AI+ MN + L + + V + S ++ ++GA N++I N
Sbjct: 106 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKN 165
Query: 129 LDPEVDEKLLYDTFSAFGVILQTPKIM 155
++D++ L D F FG L K+M
Sbjct: 166 FGEDMDDERLKDLFGKFGPALSV-KVM 191
Score = 102 (41.0 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 219
Query: 97 NMIKLYGKPIRVNKA 111
N +L GK I V +A
Sbjct: 220 NGKELNGKQIYVGRA 234
Score = 87 (35.7 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
L ++M D ++G SKGF F+++ E + ++D M+G+ L + I V A KK
Sbjct: 186 LSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 237
Score = 80 (33.2 bits), Expect = 3.6e-15, Sum P(3) = 3.6e-15
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 298 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 342
Score = 69 (29.3 bits), Expect = 3.6e-15, Sum P(3) = 3.6e-15
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L FS FG I K+M
Sbjct: 261 GVNLYVKNLDDGIDDERLRKEFSPFGTITSA-KVM 294
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 35/82 (42%), Positives = 56/82 (68%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
G + + D T++VG L+ KV+E L++ELF Q+GPV+ V +PKD+ + Q + F+ F E
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNFKHE 60
Query: 87 EDADYAIKIMNMIKLYGKPIRV 108
YA+ ++N IKLYG+PI++
Sbjct: 61 VSVPYAMNLLNGIKLYGRPIKI 82
>UNIPROTKB|F1SJV7 [details] [associations]
symbol:LOC100522453 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 KO:K13188 OMA:DRHYSRE EMBL:CU856090
RefSeq:XP_003129925.1 Ensembl:ENSSSCT00000032163 GeneID:100522453
KEGG:ssc:100522453 Uniprot:F1SJV7
Length = 265
Score = 193 (73.0 bits), Expect = 4.5e-15, P = 4.5e-15
Identities = 41/110 (37%), Positives = 66/110 (60%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
G + + D T++VG L+ KV+E L++ELF Q+GPV+ V +PKD+ + Q + F+ F E
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNFKHE 60
Query: 87 EDADYAIKIMNMIKLYGKPIRVN--KASSHQKNLDVGANI---FIGNLDP 131
YA+ ++N IKL+G+PI++ SSH +V + +GN P
Sbjct: 61 VSVPYAMNLLNGIKLFGRPIKIQFRSGSSHASQ-EVSLSYPQHHVGNSSP 109
>UNIPROTKB|E5RGH3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00983093
ProteinModelPortal:E5RGH3 SMR:E5RGH3 Ensembl:ENST00000518196
ArrayExpress:E5RGH3 Bgee:E5RGH3 Uniprot:E5RGH3
Length = 108
Score = 162 (62.1 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 39/96 (40%), Positives = 53/96 (55%)
Query: 71 VTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGN 128
+T+ GY ++ F DA+ A+ MN + GKP+R+ ++ + VG NIFI N
Sbjct: 2 ITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKN 60
Query: 129 LDPEVDEKLLYDTFSAFGVILQTPKIM--NMIKLYG 162
LD +D K LYDTFSAFG IL + N K YG
Sbjct: 61 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYG 96
Score = 45 (20.9 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 197 DTGNSKGFAFINYASFEASD 216
D SKG+ F+++ + EA++
Sbjct: 88 DENGSKGYGFVHFETQEAAE 107
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 145 (56.1 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
Identities = 44/136 (32%), Positives = 66/136 (48%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YVG L V+E L+ +LF Q GP N M D T + Y F+EF A A+
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 96 MNMIKLYGKPIRVNKA---SSHQKNLDVGA-----------NIFIGNLDPEVDEKLLYDT 141
MN K+ GK ++VN A SS +K+ ++F+G+L PE+ + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 142 FSAFGVILQTPKIMNM 157
F+ FG I + +M
Sbjct: 126 FAPFGRISDARVVKDM 141
Score = 107 (42.7 bits), Expect = 0.00093, P = 0.00093
Identities = 32/113 (28%), Positives = 55/113 (48%)
Query: 3 LGREIQAG-ISTPCLQS--LSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSG 59
+G+E++ +TP Q S + + S D ++VG L +++ + F G
Sbjct: 72 MGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD-HFHVFVGDLSPEITTEDIKAAFAPFG 130
Query: 60 PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112
+ + + KD T +GYGF+ F + DA+ AI+ M L G+ IR N A+
Sbjct: 131 RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Score = 87 (35.7 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F+++ + ++ +I M GQ+L R I ++A +K
Sbjct: 134 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 204 (76.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 67/223 (30%), Positives = 109/223 (48%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSG--PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
++YVG L V+E ++ ELF + G + ++H+ +D T GY ++ F DA+ A+
Sbjct: 185 SLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERAL 244
Query: 94 KIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
+N ++GKP R+ + ++ +VG NIF+ NL+ VD +LYDTFS+FG IL
Sbjct: 245 DTLNYTLVHGKPCRIMWSYRDPTKRKTNVG-NIFVKNLEKGVDNAMLYDTFSSFGNILSC 303
Query: 152 PKI---MNMIKLYGKPIRVNKASSHQKNLD-VGANIFIGNLDPEIMRDPDTGNSKGFAFI 207
K+ + K YG + S +K ++ V + +G P I + + +
Sbjct: 304 -KVEFEKGISKGYGY-VHFETNDSAEKAIEKVNGTLILGK--P-INVERFVSKVERYKVE 358
Query: 208 NYASFEASDASIDA-MHGQYLCNRPISV-SYAFKKDSKGDRHG 248
N F +D SI + Q L NR + S K D+ G G
Sbjct: 359 NKVFFRNADESITIEILQQELSNRFGEIESCILKNDANGKSKG 401
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 160 (61.4 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 42/125 (33%), Positives = 65/125 (52%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YVG L V+E L+ +LF Q GP + M D T + Y F+EF A ++
Sbjct: 9 TLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVD--TAGNDPYCFVEFFEHRHAAASLAA 66
Query: 96 MNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTP 152
MN K+ GK ++VN A SS +K+ ++F+G+L PE+ + F+ FG I
Sbjct: 67 MNGRKIMGKEVKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDAR 126
Query: 153 KIMNM 157
+ +M
Sbjct: 127 VVKDM 131
Score = 102 (41.0 bits), Expect = 8.4e-05, Sum P(3) = 8.4e-05
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++VG L +++ + F G + + + KD T +GYGF+ F + DA+ AI+ M
Sbjct: 98 VFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 157
Query: 97 NMIKLYGKPIRVNKAS 112
L G+ IR N A+
Sbjct: 158 GGQWLGGRQIRTNWAT 173
Score = 87 (35.7 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F+++ + ++ +I M GQ+L R I ++A +K
Sbjct: 124 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 175
Score = 75 (31.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 155 MNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEIMRD 195
MN K+ GK ++VN A SS +K+ ++F+G+L PEI D
Sbjct: 67 MNGRKIMGKEVKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTD 110
Score = 50 (22.7 bits), Expect = 8.4e-05, Sum P(3) = 8.4e-05
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + E+L+ TFS FG I++
Sbjct: 206 VYCGGVTTGLTEQLMRQTFSPFGQIME 232
Score = 43 (20.2 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 202 KGFAFINYASFEASDASIDAMHGQYL 227
KG++F+ + S E++ +I +++G L
Sbjct: 239 KGYSFVRFNSHESAAHAIVSVNGTSL 264
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 161 (61.7 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 38/124 (30%), Positives = 68/124 (54%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D + V L +S+ + LFV G V + + +D+VT GYGF+ ++ +EDA+
Sbjct: 107 DPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEK 166
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
AI +N ++L K I+V+ A +++ GAN+++ L + + L FS +G I+ T
Sbjct: 167 AINALNGLRLQNKTIKVSIARPSSESIK-GANLYVSGLPKNMTQSDLESLFSPYGKII-T 224
Query: 152 PKIM 155
+I+
Sbjct: 225 SRIL 228
Score = 90 (36.7 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 31/96 (32%), Positives = 47/96 (48%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTH-----QGYGFIEF 83
ES G A +YV GL ++++ + LF G ++ + D +T H +G GFI F
Sbjct: 191 ESIKG-ANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRF 249
Query: 84 MGEEDADYAIKIMNMI--KLYGKPIRVNKASSHQKN 117
+AD AIK +N K +PI V A++ N
Sbjct: 250 DQRFEADRAIKELNGTTPKNSTEPITVKFANNPSSN 285
Score = 82 (33.9 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD + KGF F+ ++E + +I +++G L NR + VS+ K+ +
Sbjct: 391 KVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLNGYTLGNRVLQVSFKTNKNKQ 443
Score = 64 (27.6 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
IF+ NL P+ +E +L+ F FG + Q+ K++
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAV-QSVKVI 393
Score = 54 (24.1 bits), Expect = 9.6e-12, Sum P(3) = 9.6e-12
Identities = 24/65 (36%), Positives = 31/65 (47%)
Query: 199 GNSKGFAFINYAS-FEASDASIDAMHGQYLCN--RPISVSYAFKKDS-KGDRHGSAAERL 254
G SKG FI + FEA D +I ++G N PI+V +A S K AA
Sbjct: 239 GLSKGVGFIRFDQRFEA-DRAIKELNGTTPKNSTEPITVKFANNPSSNKNSMQPLAA--Y 295
Query: 255 LAAQN 259
+A QN
Sbjct: 296 IAPQN 300
Score = 38 (18.4 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 16 LQSLSQTKLEGGGESGDGDATIYVGG 41
+Q Q GG SG G T GG
Sbjct: 8 VQQQQQQPSGAGGASGVGSTTGSAGG 33
>TAIR|locus:2124670 [details] [associations]
symbol:AT4G10110 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K12831 UniGene:At.2966
UniGene:At.33652 EMBL:BT003697 EMBL:AK119126 IPI:IPI00532832
RefSeq:NP_192749.2 ProteinModelPortal:Q8GW25 SMR:Q8GW25
IntAct:Q8GW25 PaxDb:Q8GW25 PRIDE:Q8GW25 EnsemblPlants:AT4G10110.1
GeneID:826602 KEGG:ath:AT4G10110 TAIR:At4g10110 eggNOG:NOG276964
HOGENOM:HOG000238526 InParanoid:Q8GW25 OMA:SLEYSRR PhylomeDB:Q8GW25
ProtClustDB:CLSN2690837 Genevestigator:Q8GW25 Uniprot:Q8GW25
Length = 173
Score = 181 (68.8 bits), Expect = 5.1e-14, P = 5.1e-14
Identities = 27/79 (34%), Positives = 58/79 (73%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
SG + T+Y+G +D++VS+ +++++ +Q+G V+++H+P+D+ T +G+ F E+ EE A
Sbjct: 2 SGTSNCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIA 61
Query: 90 DYAIKIMN-MIKLYGKPIR 107
DYA+K+ + ++ LY + ++
Sbjct: 62 DYAVKLFSGLVSLYNRTLK 80
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 199 (75.1 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 65/223 (29%), Positives = 112/223 (50%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L++ V+E +++E+F G V ++ + +D VT+ GY ++ + DA+ A+
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 95 IMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
+N + G+P R+ ++ S +K+ G NIF+ NLD +D K L+DTFS FG IL
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKS-GTG-NIFVKNLDKSIDNKALFDTFSMFGNILSC 133
Query: 152 PKIMNMI---KLYGKPIRVNKASSHQ-----KNLDVGA-NIFIGNLDPEIMRDPDTGNSK 202
+ K YG ++ S+ + + +G+ N+++G P I + N
Sbjct: 134 KVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVG---PFIKKSERATNDT 190
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPIS--VSYAFKKDSK 243
F + +F D S+ H + L N P S K D+K
Sbjct: 191 KFTNLYVKNFP--D-SVTETHLRQLFN-PYGEITSMIVKMDNK 229
Score = 122 (48.0 bits), Expect = 0.00021, P = 0.00021
Identities = 24/82 (29%), Positives = 48/82 (58%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ LDD + + ++ ELF G + + + +D Q+ +G+GF+ F +E+A+ A+ M
Sbjct: 452 LYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQS-KGFGFVCFASQEEANKAVTEM 510
Query: 97 NMIKLYGKPIRVNKASSHQKNL 118
++ + GKP+ V A ++ L
Sbjct: 511 HLKIINGKPLYVGLAEKREQRL 532
Score = 121 (47.7 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 41/152 (26%), Positives = 70/152 (46%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ I+V LD + +++ F G +++ + D ++ + YGF+ + EE
Sbjct: 100 KSGTGN--IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKS-KSYGFVHYEDEES 156
Query: 89 ADYAIKIMNMIKLYGKPIRVN---KASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
A AI+ +N ++L K + V K S N N+++ N V E L F+ +
Sbjct: 157 AKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPY 216
Query: 146 GVILQTPKIMNMIKLYGKPIRVNKASSHQ-KN 176
G I T I+ M K +N A + KN
Sbjct: 217 GEI--TSMIVKMDNKNRKFCFINYADAESAKN 246
Score = 87 (35.7 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 175 KNLDVGAN-IFIGNL-DP-------EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQ 225
KNLD G + I + L +P ++MRD + SKGF F+ +AS E ++ ++ MH +
Sbjct: 455 KNLDDGIDDIMLRELFEPFGTITSAKVMRD-EKEQSKGFGFVCFASQEEANKAVTEMHLK 513
Query: 226 YLCNRPISVSYAFKKDSKGDR 246
+ +P+ V A K++ + R
Sbjct: 514 IINGKPLYVGLAEKREQRLSR 534
Score = 42 (19.8 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 175 KNLDVGANIFIGNLDPEI 192
KN G N++I NLD I
Sbjct: 444 KNKHQGVNLYIKNLDDGI 461
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 199 (75.1 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 65/223 (29%), Positives = 112/223 (50%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L++ V+E +++E+F G V ++ + +D VT+ GY ++ + DA+ A+
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 95 IMNMIKLYGKPIRV---NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
+N + G+P R+ ++ S +K+ G NIF+ NLD +D K L+DTFS FG IL
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKS-GTG-NIFVKNLDKSIDNKALFDTFSMFGNILSC 133
Query: 152 PKIMNMI---KLYGKPIRVNKASSHQ-----KNLDVGA-NIFIGNLDPEIMRDPDTGNSK 202
+ K YG ++ S+ + + +G+ N+++G P I + N
Sbjct: 134 KVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVG---PFIKKSERATNDT 190
Query: 203 GFAFINYASFEASDASIDAMHGQYLCNRPIS--VSYAFKKDSK 243
F + +F D S+ H + L N P S K D+K
Sbjct: 191 KFTNLYVKNFP--D-SVTETHLRQLFN-PYGEITSMIVKMDNK 229
Score = 122 (48.0 bits), Expect = 0.00021, P = 0.00021
Identities = 24/82 (29%), Positives = 48/82 (58%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ LDD + + ++ ELF G + + + +D Q+ +G+GF+ F +E+A+ A+ M
Sbjct: 452 LYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQS-KGFGFVCFASQEEANKAVTEM 510
Query: 97 NMIKLYGKPIRVNKASSHQKNL 118
++ + GKP+ V A ++ L
Sbjct: 511 HLKIINGKPLYVGLAEKREQRL 532
Score = 121 (47.7 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 41/152 (26%), Positives = 70/152 (46%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ I+V LD + +++ F G +++ + D ++ + YGF+ + EE
Sbjct: 100 KSGTGN--IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKS-KSYGFVHYEDEES 156
Query: 89 ADYAIKIMNMIKLYGKPIRVN---KASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAF 145
A AI+ +N ++L K + V K S N N+++ N V E L F+ +
Sbjct: 157 AKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPY 216
Query: 146 GVILQTPKIMNMIKLYGKPIRVNKASSHQ-KN 176
G I T I+ M K +N A + KN
Sbjct: 217 GEI--TSMIVKMDNKNRKFCFINYADAESAKN 246
Score = 87 (35.7 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 175 KNLDVGAN-IFIGNL-DP-------EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQ 225
KNLD G + I + L +P ++MRD + SKGF F+ +AS E ++ ++ MH +
Sbjct: 455 KNLDDGIDDIMLRELFEPFGTITSAKVMRD-EKEQSKGFGFVCFASQEEANKAVTEMHLK 513
Query: 226 YLCNRPISVSYAFKKDSKGDR 246
+ +P+ V A K++ + R
Sbjct: 514 IINGKPLYVGLAEKREQRLSR 534
Score = 42 (19.8 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 175 KNLDVGANIFIGNLDPEI 192
KN G N++I NLD I
Sbjct: 444 KNKHQGVNLYIKNLDDGI 461
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 157 (60.3 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 37/121 (30%), Positives = 71/121 (58%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
SGD T++VG L + ET + F +G V +V + ++++T +GYGF+EF+ A
Sbjct: 103 SGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAA 162
Query: 90 DYAIKIMN--MIKLYGKPIRVNKAS---SHQKNLDVGAN--IFIGNLDPEVDEKLLYDTF 142
+ ++ + ++ +P R+N AS ++ ++ G + +F+G+L P+V + LL++TF
Sbjct: 163 EEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETF 222
Query: 143 S 143
S
Sbjct: 223 S 223
Score = 91 (37.1 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 26/85 (30%), Positives = 42/85 (49%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVV-NVHMPKDRVTQTHQGYGFIEFMGEE 87
E+G D +++VG L V++ L+ E F P V + + D T +GYGF+ F E
Sbjct: 197 ENGP-DLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDEN 255
Query: 88 DADYAIKIMNMIKLYGKPIRVNKAS 112
+ A+ MN + +RV A+
Sbjct: 256 ERSRALTEMNGAYCSNRQMRVGIAT 280
Score = 83 (34.3 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 16/67 (23%), Positives = 35/67 (52%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA 250
+++ D +TG SKG+ F+ + ++ M+G Y NR + V A K + ++ +
Sbjct: 233 KVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHS 292
Query: 251 AERLLAA 257
++ ++ A
Sbjct: 293 SQAVILA 299
Score = 64 (27.6 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
A IF+G +DP+V ++ L FS FG ++
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPFSQFGEVV 348
Score = 61 (26.5 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 19/81 (23%), Positives = 41/81 (50%)
Query: 181 ANIFIGNLDPEI----MRDPDT--GN--------SKGFAFINYASFEASDASIDAMHGQY 226
A IF+G +DP++ +R P + G KG F+ +A ++++ +I++++G
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTV 380
Query: 227 LCNRPISVSYAFK--KDSKGD 245
+ + +S+ K +GD
Sbjct: 381 IGKNTVRLSWGRSPNKQWRGD 401
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 177 (67.4 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 48/160 (30%), Positives = 83/160 (51%)
Query: 7 IQAGISTPCLQSLSQTKLEGG----GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVV 62
I I+TP ++ GG +YVGGLD +V+E ++ ++F +G V+
Sbjct: 58 IPTAITTPMSGNMVSPTSAGGYVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVI 117
Query: 63 NVHM-PKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA-SSHQKNLDV 120
+V + P YGF+EF A+ A++ +N +++ IRVN A S+ N +
Sbjct: 118 SVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNTANKED 177
Query: 121 GAN---IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNM 157
+N IF+G+L EV++++L FSAFG + + + +M
Sbjct: 178 TSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDM 217
Score = 96 (38.9 bits), Expect = 6.4e-05, Sum P(3) = 6.4e-05
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
I+VG L ++V++ ++ + F G V + D T +GYGF+ F DA+ A+ M
Sbjct: 184 IFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSM 243
Query: 97 NMIKLYGKPIRVNKAS 112
+ L + IR N A+
Sbjct: 244 DGEWLGSRAIRCNWAN 259
Score = 56 (24.8 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLAAQNPL 261
+GFAFI + E + ++I ++G + RP+ S+ + G ++ A +P
Sbjct: 343 RGFAFIKMDTHENAASAICQLNGYNVNGRPLKCSWGKDRPPTGQFDNFPGQQ---ANSPF 399
Query: 262 SQADRPH 268
+ + P+
Sbjct: 400 ASSPGPY 406
Score = 49 (22.3 bits), Expect = 6.4e-05, Sum P(3) = 6.4e-05
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 125 FIGNLDPEVDEKLLYDTFSAFGVILQT 151
++GNL P + + F FG +++T
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIET 337
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 153 (58.9 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 40/145 (27%), Positives = 73/145 (50%)
Query: 11 ISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDR 70
+S C S ++ G E D + V L +++ + LF G + + + +D+
Sbjct: 49 VSNTCT---SPVEMPNGSE--DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDK 103
Query: 71 VTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLD 130
+T GYGF+ +M +DA+ AI +N ++L K I+V+ A ++ AN+++ L
Sbjct: 104 ITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLP 162
Query: 131 PEVDEKLLYDTFSAFGVILQTPKIM 155
+ +K L FS FG I+ T +I+
Sbjct: 163 KTMTQKELEQLFSQFGRII-TSRIL 186
Score = 110 (43.8 bits), Expect = 9.6e-11, Sum P(3) = 9.6e-11
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 153 DANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAI 212
Query: 94 KIMNMIKLYG--KPIRVNKASS-HQKN 117
K +N K G +PI V A++ QK+
Sbjct: 213 KGLNGQKPPGATEPITVKFANNPSQKS 239
Score = 79 (32.9 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 335 KVIRDFNTNKCKGFGFVTMTNYDEAAVAIASLNGYRLGDRVLQVSFKTNKTHK 387
Score = 64 (27.6 bits), Expect = 9.6e-11, Sum P(3) = 9.6e-11
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAV 331
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 146 (56.5 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 44/136 (32%), Positives = 66/136 (48%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YVG L V+E L+ +LF Q GP N M D T + Y F+EF A A+
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAA 65
Query: 96 MNMIKLYGKPIRVNKA---SSHQKNLDVGA-----------NIFIGNLDPEVDEKLLYDT 141
MN K+ GK ++VN A SS +K+ ++F+G+L PE+ + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 142 FSAFGVILQTPKIMNM 157
F+ FG I + +M
Sbjct: 126 FAPFGRISDARVVKDM 141
Score = 107 (42.7 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 32/113 (28%), Positives = 55/113 (48%)
Query: 3 LGREIQAG-ISTPCLQS--LSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSG 59
+G+E++ +TP Q S + + S D ++VG L +++ + F G
Sbjct: 72 MGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD-HFHVFVGDLSPEITTEDIKAAFAPFG 130
Query: 60 PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112
+ + + KD T +GYGF+ F + DA+ AI+ M L G+ IR N A+
Sbjct: 131 RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Score = 87 (35.7 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F+++ + ++ +I M GQ+L R I ++A +K
Sbjct: 134 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Score = 50 (22.7 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + E+L+ TFS FG I++
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIME 242
Score = 42 (19.8 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 202 KGFAFINYASFEASDASIDAMHG 224
KG++F+ + S E++ +I +++G
Sbjct: 249 KGYSFVRFNSHESAAHAIVSVNG 271
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 146 (56.5 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 44/136 (32%), Positives = 66/136 (48%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YVG L V+E L+ +LF Q GP N M D T + Y F+EF A A+
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAA 65
Query: 96 MNMIKLYGKPIRVNKA---SSHQKNLDVGA-----------NIFIGNLDPEVDEKLLYDT 141
MN K+ GK ++VN A SS +K+ ++F+G+L PE+ + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 142 FSAFGVILQTPKIMNM 157
F+ FG I + +M
Sbjct: 126 FAPFGRISDARVVKDM 141
Score = 107 (42.7 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 32/113 (28%), Positives = 55/113 (48%)
Query: 3 LGREIQAG-ISTPCLQS--LSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSG 59
+G+E++ +TP Q S + + S D ++VG L +++ + F G
Sbjct: 72 MGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD-HFHVFVGDLSPEITTEDIKAAFAPFG 130
Query: 60 PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112
+ + + KD T +GYGF+ F + DA+ AI+ M L G+ IR N A+
Sbjct: 131 RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Score = 87 (35.7 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F+++ + ++ +I M GQ+L R I ++A +K
Sbjct: 134 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Score = 50 (22.7 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + E+L+ TFS FG I++
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIME 242
Score = 42 (19.8 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 202 KGFAFINYASFEASDASIDAMHG 224
KG++F+ + S E++ +I +++G
Sbjct: 249 KGYSFVRFNSHESAAHAIVSVNG 271
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 145 (56.1 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 44/136 (32%), Positives = 66/136 (48%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YVG L V+E L+ +LF Q GP N M D T + Y F+EF A A+
Sbjct: 4 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 61
Query: 96 MNMIKLYGKPIRVNKA---SSHQKNLDVGA-----------NIFIGNLDPEVDEKLLYDT 141
MN K+ GK ++VN A SS +K+ ++F+G+L PE+ + +
Sbjct: 62 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 121
Query: 142 FSAFGVILQTPKIMNM 157
F+ FG I + +M
Sbjct: 122 FAPFGRISDARVVKDM 137
Score = 107 (42.7 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 32/113 (28%), Positives = 55/113 (48%)
Query: 3 LGREIQAG-ISTPCLQS--LSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSG 59
+G+E++ +TP Q S + + S D ++VG L +++ + F G
Sbjct: 68 MGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD-HFHVFVGDLSPEITTEDIKAAFAPFG 126
Query: 60 PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112
+ + + KD T +GYGF+ F + DA+ AI+ M L G+ IR N A+
Sbjct: 127 RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 179
Score = 87 (35.7 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F+++ + ++ +I M GQ+L R I ++A +K
Sbjct: 130 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 181
Score = 50 (22.7 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + E+L+ TFS FG I++
Sbjct: 212 VYCGGVTSGLTEQLMRQTFSPFGQIME 238
Score = 46 (21.3 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 8/23 (34%), Positives = 18/23 (78%)
Query: 202 KGFAFINYASFEASDASIDAMHG 224
KG++FI ++S E++ +I +++G
Sbjct: 245 KGYSFIRFSSHESAAHAIVSVNG 267
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 145 (56.1 bits), Expect = 9.7e-13, Sum P(2) = 9.7e-13
Identities = 44/136 (32%), Positives = 66/136 (48%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YVG L V+E L+ +LF Q GP N M D T + Y F+EF A A+
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 96 MNMIKLYGKPIRVNKA---SSHQKNLDVGA-----------NIFIGNLDPEVDEKLLYDT 141
MN K+ GK ++VN A SS +K+ ++F+G+L PE+ + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 142 FSAFGVILQTPKIMNM 157
F+ FG I + +M
Sbjct: 126 FAPFGRISDARVVKDM 141
Score = 107 (42.7 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 32/113 (28%), Positives = 55/113 (48%)
Query: 3 LGREIQAG-ISTPCLQS--LSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSG 59
+G+E++ +TP Q S + + S D ++VG L +++ + F G
Sbjct: 72 MGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD-HFHVFVGDLSPEITTEDIKAAFAPFG 130
Query: 60 PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112
+ + + KD T +GYGF+ F + DA+ AI+ M L G+ IR N A+
Sbjct: 131 RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Score = 87 (35.7 bits), Expect = 9.7e-13, Sum P(2) = 9.7e-13
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F+++ + ++ +I M GQ+L R I ++A +K
Sbjct: 134 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Score = 50 (22.7 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + E+L+ TFS FG I++
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIME 242
Score = 42 (19.8 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 202 KGFAFINYASFEASDASIDAMHG 224
KG++F+ + S E++ +I +++G
Sbjct: 249 KGYSFVRFNSHESAAHAIVSVNG 271
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 145 (56.1 bits), Expect = 9.8e-13, Sum P(2) = 9.8e-13
Identities = 44/136 (32%), Positives = 66/136 (48%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YVG L V+E L+ +LF Q GP N M D T + Y F+EF A A+
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 96 MNMIKLYGKPIRVNKA---SSHQKNLDVGA-----------NIFIGNLDPEVDEKLLYDT 141
MN K+ GK ++VN A SS +K+ ++F+G+L PE+ + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 142 FSAFGVILQTPKIMNM 157
F+ FG I + +M
Sbjct: 126 FAPFGRISDARVVKDM 141
Score = 107 (42.7 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 32/113 (28%), Positives = 55/113 (48%)
Query: 3 LGREIQAG-ISTPCLQS--LSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSG 59
+G+E++ +TP Q S + + S D ++VG L +++ + F G
Sbjct: 72 MGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD-HFHVFVGDLSPEITTEDIKAAFAPFG 130
Query: 60 PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112
+ + + KD T +GYGF+ F + DA+ AI+ M L G+ IR N A+
Sbjct: 131 RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Score = 87 (35.7 bits), Expect = 9.8e-13, Sum P(2) = 9.8e-13
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F+++ + ++ +I M GQ+L R I ++A +K
Sbjct: 134 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Score = 50 (22.7 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + E+L+ TFS FG I++
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIME 242
Score = 45 (20.9 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 7/23 (30%), Positives = 18/23 (78%)
Query: 202 KGFAFINYASFEASDASIDAMHG 224
KG++F+ ++S E++ +I +++G
Sbjct: 249 KGYSFVRFSSHESAAHAIVSVNG 271
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 145 (56.1 bits), Expect = 9.8e-13, Sum P(2) = 9.8e-13
Identities = 44/136 (32%), Positives = 66/136 (48%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YVG L V+E L+ +LF Q GP N M D T + Y F+EF A A+
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 96 MNMIKLYGKPIRVNKA---SSHQKNLDVGA-----------NIFIGNLDPEVDEKLLYDT 141
MN K+ GK ++VN A SS +K+ ++F+G+L PE+ + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 142 FSAFGVILQTPKIMNM 157
F+ FG I + +M
Sbjct: 126 FAPFGRISDARVVKDM 141
Score = 107 (42.7 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 32/113 (28%), Positives = 55/113 (48%)
Query: 3 LGREIQAG-ISTPCLQS--LSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSG 59
+G+E++ +TP Q S + + S D ++VG L +++ + F G
Sbjct: 72 MGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD-HFHVFVGDLSPEITTEDIKAAFAPFG 130
Query: 60 PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS 112
+ + + KD T +GYGF+ F + DA+ AI+ M L G+ IR N A+
Sbjct: 131 RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Score = 87 (35.7 bits), Expect = 9.8e-13, Sum P(2) = 9.8e-13
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F+++ + ++ +I M GQ+L R I ++A +K
Sbjct: 134 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Score = 50 (22.7 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + E+L+ TFS FG I++
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIME 242
Score = 42 (19.8 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 202 KGFAFINYASFEASDASIDAMHG 224
KG++F+ + S E++ +I +++G
Sbjct: 249 KGYSFVRFNSHESAAHAIVSVNG 271
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 153 (58.9 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 35/132 (26%), Positives = 69/132 (52%)
Query: 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
++ GG + D + V L +++ LF G + + + +D++T GYGF+ +
Sbjct: 77 MQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 136
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFS 143
+ +DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS
Sbjct: 137 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFS 195
Query: 144 AFGVILQTPKIM 155
+G I+ T +I+
Sbjct: 196 QYGRII-TSRIL 206
Score = 107 (42.7 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 173 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAI 232
Query: 94 KIMNMIKLYG--KPIRVNKASS 113
K +N K G +PI V A++
Sbjct: 233 KGLNGQKPSGAAEPITVKFANN 254
Score = 78 (32.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 355 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 407
Score = 64 (27.6 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAV 351
>UNIPROTKB|E7ETC0 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI01012546 ProteinModelPortal:E7ETC0 SMR:E7ETC0
Ensembl:ENST00000497671 ArrayExpress:E7ETC0 Bgee:E7ETC0
Uniprot:E7ETC0
Length = 135
Score = 170 (64.9 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 43/121 (35%), Positives = 66/121 (54%)
Query: 32 DGDA-TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDAD 90
DG T+YVG L V+E L+ +LF Q GP + M + + + Y F+EF DA
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAA 62
Query: 91 YAIKIMNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
A+ MN K+ GK ++VN A SS +K+ ++F+G+L PE+ + + F+ FG
Sbjct: 63 AALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGK 122
Query: 148 I 148
I
Sbjct: 123 I 123
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 151 (58.2 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 41/145 (28%), Positives = 80/145 (55%)
Query: 17 QSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQ 76
Q + Q+ + S D + TI++G L + E+ + F Q+G V++V + +++ T +
Sbjct: 67 QKMQQSPTQIQSSSED-NKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSE 125
Query: 77 GYGFIEFMGEEDADYAIKIMN--MIKLYGKPIRVNKA--SSHQKNLDVGAN--IFIGNLD 130
YGF+EF A+ ++ N M+ +P R+N A S+ +K + G++ IF+G+L
Sbjct: 126 RYGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLA 185
Query: 131 PEVDEKLLYDTFSAFGVILQTPKIM 155
+V + +L DTF++ L+ K++
Sbjct: 186 SDVTDTMLRDTFASRYPSLKGAKVV 210
Score = 92 (37.4 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 25 EGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVN-VHMPKDRVTQTHQGYGFIEF 83
E E+G D +I+VG L V++T++ + F P + + D T +GYGF+ F
Sbjct: 168 EKRAETGS-DFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRF 226
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKAS 112
E + A+ MN + + +R+ A+
Sbjct: 227 GDESERSRAMTEMNGVYCSSRAMRIGVAT 255
Score = 81 (33.6 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF-KKDSKGDRHGS 249
+++ D +TG+SKG+ F+ + ++ M+G Y +R + + A KK S +++ S
Sbjct: 208 KVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQYSS 267
Query: 250 AA 251
A
Sbjct: 268 QA 269
Score = 64 (27.6 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 109 NKASSHQKNLDVGAN---IFIGNLDPEVDEKLLYDTFSAFGVIL 149
N A++H D ++ IF+G LD EV ++ L +F+ FG ++
Sbjct: 279 NGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVV 322
Score = 43 (20.2 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 21/103 (20%), Positives = 43/103 (41%)
Query: 168 NKASSHQKNLDVGAN---IFIGNLDPEIMRDPDTGNS---------------KGFAFINY 209
N A++H D ++ IF+G LD E+ D + S KG F+ +
Sbjct: 279 NGAATHGSQSDGDSSNTTIFVGGLDSEVT-DEELRQSFNQFGEVVSVKIPAGKGCGFVQF 337
Query: 210 ASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAE 252
+ ++ +I + G + + + +S+ +K R S ++
Sbjct: 338 SDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQ 380
>UNIPROTKB|I3L8K8 [details] [associations]
symbol:I3L8K8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 EMBL:CT956011
Ensembl:ENSSSCT00000026978 OMA:HRISVAF Uniprot:I3L8K8
Length = 87
Score = 168 (64.2 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 32/77 (41%), Positives = 51/77 (66%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ D T++VG L+ +V E +++ELF+Q+GP+ V + KDR + +GF+ F E Y
Sbjct: 7 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-DGNPKSFGFVCFKHPESVSY 65
Query: 92 AIKIMNMIKLYGKPIRV 108
AI ++N I+LYG+PI V
Sbjct: 66 AIALLNGIRLYGRPINV 82
Score = 74 (31.1 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 192 IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238
I +D D GN K F F+ + E+ +I ++G L RPI+V Y F
Sbjct: 41 ICKDRD-GNPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVQYRF 86
Score = 59 (25.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 113 SHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFG 146
S Q+ D +F+GNL+ V E++LY+ F G
Sbjct: 3 SAQEEAD--RTVFVGNLEARVREEILYELFLQAG 34
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 151 (58.2 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 42/151 (27%), Positives = 72/151 (47%)
Query: 6 EIQAGISTPCLQSLSQTKLEG-GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNV 64
E Q G P +L L G G + D + V L +++ LF G + +
Sbjct: 10 ESQVG-GGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESC 68
Query: 65 HMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 124
+ +D++T GYGF+ + DAD AI +N +KL K I+V+ A ++ AN+
Sbjct: 69 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANL 127
Query: 125 FIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
++ L + +K + FS +G I+ T +I+
Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRII-TSRIL 157
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
GG +G G I+V L + E+++W+LF G V NV + +D T +G+GF+
Sbjct: 277 GGAAGAGWC-IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNY 335
Query: 87 EDADYAIKIMNMIKLYGKPIRVNKASSHQ 115
++A AI +N +L + ++V+ +S Q
Sbjct: 336 DEAAMAIASLNGYRLGERVLQVSFKTSKQ 364
Score = 116 (45.9 bits), Expect = 8.6e-12, Sum P(3) = 8.6e-12
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +S+ M +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183
Query: 94 KIMNMIKLYG--KPIRVNKASS 113
K +N K G +PI V A++
Sbjct: 184 KGLNGQKPLGAAEPITVKFANN 205
Score = 76 (31.8 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD T KGF F+ +++ + +I +++G L R + VS+ K K
Sbjct: 314 KVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHK 366
Score = 69 (29.3 bits), Expect = 8.6e-12, Sum P(3) = 8.6e-12
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL PE DE +L+ F FG +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAV 310
Score = 56 (24.8 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 192 IMRDPDTGNSKGFAFINYAS-FEASDASIDAMHGQYLCN--RPISVSYAFKKDSK 243
I+ D TG S+G FI + EA +A I ++GQ PI+V +A K
Sbjct: 156 ILVDQVTGVSRGVGFIRFDKRIEAEEA-IKGLNGQKPLGAAEPITVKFANNPSQK 209
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 151 (58.2 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 42/151 (27%), Positives = 72/151 (47%)
Query: 6 EIQAGISTPCLQSLSQTKLEG-GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNV 64
E Q G P +L L G G + D + V L +++ LF G + +
Sbjct: 10 ESQVG-GGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESC 68
Query: 65 HMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 124
+ +D++T GYGF+ + DAD AI +N +KL K I+V+ A ++ AN+
Sbjct: 69 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANL 127
Query: 125 FIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
++ L + +K + FS +G I+ T +I+
Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRII-TSRIL 157
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
GG +G G I+V L + E+++W+LF G V NV + +D T +G+GF+
Sbjct: 277 GGAAGAGWC-IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNY 335
Query: 87 EDADYAIKIMNMIKLYGKPIRVNKASSHQ 115
++A AI +N +L + ++V+ +S Q
Sbjct: 336 DEAAMAIASLNGYRLGERVLQVSFKTSKQ 364
Score = 112 (44.5 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +S+ M +LF Q G ++ + D+ T +G GFI F +A+ AI
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAI 183
Query: 94 KIMNMIKLYG--KPIRVNKASS 113
K +N K G +PI V A++
Sbjct: 184 KGLNGQKPLGAAEPITVKFANN 205
Score = 76 (31.8 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD T KGF F+ +++ + +I +++G L R + VS+ K K
Sbjct: 314 KVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHK 366
Score = 69 (29.3 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL PE DE +L+ F FG +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAV 310
Score = 58 (25.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 192 IMRDPDTGNSKGFAFINYAS-FEASDASIDAMHGQYLCN--RPISVSYAFKKDSK 243
I+ D TG S+G FI + EA +A I ++GQ PI+V +A K
Sbjct: 156 ILLDQATGVSRGVGFIRFDKRIEAEEA-IKGLNGQKPLGAAEPITVKFANNPSQK 209
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 151 (58.2 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 42/151 (27%), Positives = 72/151 (47%)
Query: 6 EIQAGISTPCLQSLSQTKLEG-GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNV 64
E Q G P +L L G G + D + V L +++ LF G + +
Sbjct: 10 ESQVG-GGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESC 68
Query: 65 HMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 124
+ +D++T GYGF+ + DAD AI +N +KL K I+V+ A ++ AN+
Sbjct: 69 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANL 127
Query: 125 FIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
++ L + +K + FS +G I+ T +I+
Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRII-TSRIL 157
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
GG +G G I+V L + E+++W+LF G V NV + +D T +G+GF+
Sbjct: 277 GGAAGAGWC-IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNY 335
Query: 87 EDADYAIKIMNMIKLYGKPIRVNKASSHQ 115
++A AI +N +L + ++V+ +S Q
Sbjct: 336 DEAAMAIASLNGYRLGERVLQVSFKTSKQ 364
Score = 112 (44.5 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +S+ M +LF Q G ++ + D+ T +G GFI F +A+ AI
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAI 183
Query: 94 KIMNMIKLYG--KPIRVNKASS 113
K +N K G +PI V A++
Sbjct: 184 KGLNGQKPLGAAEPITVKFANN 205
Score = 76 (31.8 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD T KGF F+ +++ + +I +++G L R + VS+ K K
Sbjct: 314 KVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHK 366
Score = 69 (29.3 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL PE DE +L+ F FG +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAV 310
Score = 58 (25.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 192 IMRDPDTGNSKGFAFINYAS-FEASDASIDAMHGQYLCN--RPISVSYAFKKDSK 243
I+ D TG S+G FI + EA +A I ++GQ PI+V +A K
Sbjct: 156 ILLDQATGVSRGVGFIRFDKRIEAEEA-IKGLNGQKPLGAAEPITVKFANNPSQK 209
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 139 (54.0 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 38/135 (28%), Positives = 70/135 (51%)
Query: 26 GGGESGDGDAT----IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFI 81
G G G A+ +++G L + E + +F QSG + + ++++T +GYGFI
Sbjct: 47 GIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFI 106
Query: 82 EFMGEEDADYAIKIMNMIKLYG--KPIRVN--KASSHQKNLDV-GAN--IFIGNLDPEVD 134
EF+ A+ ++ N + + R+N +A + +K G + IF+G+L PEV
Sbjct: 107 EFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVT 166
Query: 135 EKLLYDTF-SAFGVI 148
+ +L DTF + +G +
Sbjct: 167 DYMLSDTFKNVYGSV 181
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 29/96 (30%), Positives = 53/96 (55%)
Query: 27 GGESGDGD---ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
G +GD D TI+VGGLD V++ + +F Q G +++V +P + GF+++
Sbjct: 249 GANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRC------GFVQY 302
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLD 119
+ A++A+ ++N +L G+ IR++ S K D
Sbjct: 303 ANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSD 338
Score = 89 (36.4 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 178 DVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
D N++ +++ D TG SKG+ F+ +A ++ M+GQY RP+ + A
Sbjct: 172 DTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPA 231
Query: 238 FKKDS 242
K++
Sbjct: 232 ANKNA 236
Score = 46 (21.3 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 9/45 (20%), Positives = 24/45 (53%)
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDR 246
K F+ YA+ +++ ++ ++G L + I +S+ + + D+
Sbjct: 295 KRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQ 339
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 148 (57.2 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 35/128 (27%), Positives = 65/128 (50%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G + D + V L +++ LF G + + + +D++T GYGF+ ++
Sbjct: 31 GATDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPN 90
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
DAD AI +N +KL K I+V+ A ++ AN+++ L + +K + FS +G
Sbjct: 91 DADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMSQKDMEQLFSQYGR 149
Query: 148 ILQTPKIM 155
I+ T +I+
Sbjct: 150 II-TSRIL 156
Score = 117 (46.2 bits), Expect = 0.00022, P = 0.00022
Identities = 30/98 (30%), Positives = 51/98 (52%)
Query: 20 SQTKLEGGGESGDGDA--TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG 77
S T L G +G A I+V L + E+++W+LF G V NV + +D T +G
Sbjct: 259 SMTSLAGVNLTGPTGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKG 318
Query: 78 YGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQ 115
+GF+ ++A AI +N +L + ++V+ +S Q
Sbjct: 319 FGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSKQ 356
Score = 111 (44.1 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 54/172 (31%), Positives = 77/172 (44%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQ-THQGYGFIEFMGEEDADYA 92
DA +YV GL +S+ M +LF Q G ++ + D+VT +G GFI F +A+ A
Sbjct: 123 DANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEA 182
Query: 93 IKIMNMIKLYG--KPIRVNKASS-HQKN--------LDVGANIFIGNLDPEVDEKLLYDT 141
IK +N K G +PI V A++ QK A + G L + L +
Sbjct: 183 IKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTQLYQTAARRYTGPLHHQTQRFRLDNL 242
Query: 142 FSA-FGVILQTP-KIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPE 191
+A +GV +P I +M L G VN G IF+ NL PE
Sbjct: 243 LNASYGVKRFSPITIDSMTSLAG----VNLTGP----TGAGWCIFVYNLSPE 286
Score = 77 (32.2 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 306 KVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSKQHK 358
Score = 49 (22.3 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 192 IMRDPDT-GNSKGFAFINYASFEASDASIDAMHGQYLCN--RPISVSYAFKKDSK 243
I+ D T G S+G FI + ++ +I ++GQ PI+V +A K
Sbjct: 155 ILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 146 (56.5 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 34/128 (26%), Positives = 67/128 (52%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G + D + V L +++ + LF G + + + +D++T GYGF+ ++ +
Sbjct: 32 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS +G
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGR 150
Query: 148 ILQTPKIM 155
I+ T +I+
Sbjct: 151 II-TSRIL 157
Score = 107 (42.7 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183
Query: 94 KIMNMIKLYG--KPIRVNKASS 113
K +N K G +PI V A++
Sbjct: 184 KGLNGQKPPGATEPITVKFANN 205
Score = 78 (32.5 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 293 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 345
Score = 65 (27.9 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAV 289
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 148 (57.2 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 39/143 (27%), Positives = 69/143 (48%)
Query: 14 PCLQSLSQTKLEG-GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVT 72
P +L L G G + D + V L +++ LF G + + + +D++T
Sbjct: 17 PAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKIT 76
Query: 73 QTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPE 132
GYGF+ + DAD AI +N +KL K I+V+ A ++ AN+++ L
Sbjct: 77 GQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSGLPKT 135
Query: 133 VDEKLLYDTFSAFGVILQTPKIM 155
+ +K + FS +G I+ T +I+
Sbjct: 136 MSQKEMEQLFSQYGRII-TSRIL 157
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
GG +G G I+V L + E+++W+LF G V NV + +D T +G+GF+
Sbjct: 277 GGAAGAGWC-IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNY 335
Query: 87 EDADYAIKIMNMIKLYGKPIRVNKASSHQ 115
++A AI +N +L + ++V+ +S Q
Sbjct: 336 DEAAMAIASLNGYRLGERVLQVSFKTSKQ 364
Score = 116 (45.9 bits), Expect = 8.6e-12, Sum P(3) = 8.6e-12
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +S+ M +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183
Query: 94 KIMNMIKLYG--KPIRVNKASS 113
K +N K G +PI V A++
Sbjct: 184 KGLNGQKPLGAAEPITVKFANN 205
Score = 76 (31.8 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD T KGF F+ +++ + +I +++G L R + VS+ K K
Sbjct: 314 KVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHK 366
Score = 69 (29.3 bits), Expect = 8.6e-12, Sum P(3) = 8.6e-12
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL PE DE +L+ F FG +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAV 310
Score = 56 (24.8 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 192 IMRDPDTGNSKGFAFINYAS-FEASDASIDAMHGQYLCN--RPISVSYAFKKDSK 243
I+ D TG S+G FI + EA +A I ++GQ PI+V +A K
Sbjct: 156 ILVDQVTGVSRGVGFIRFDKRIEAEEA-IKGLNGQKPLGAAEPITVKFANNPSQK 209
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 148 (57.2 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 39/143 (27%), Positives = 69/143 (48%)
Query: 14 PCLQSLSQTKLEG-GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVT 72
P +L L G G + D + V L +++ LF G + + + +D++T
Sbjct: 17 PAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKIT 76
Query: 73 QTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPE 132
GYGF+ + DAD AI +N +KL K I+V+ A ++ AN+++ L
Sbjct: 77 GQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSGLPKT 135
Query: 133 VDEKLLYDTFSAFGVILQTPKIM 155
+ +K + FS +G I+ T +I+
Sbjct: 136 MSQKEMEQLFSQYGRII-TSRIL 157
Score = 116 (45.9 bits), Expect = 8.6e-12, Sum P(3) = 8.6e-12
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +S+ M +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183
Query: 94 KIMNMIKLYG--KPIRVNKASS 113
K +N K G +PI V A++
Sbjct: 184 KGLNGQKPLGAAEPITVKFANN 205
Score = 76 (31.8 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD T KGF F+ +++ + +I +++G L R + VS+ K K
Sbjct: 314 KVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHK 366
Score = 69 (29.3 bits), Expect = 8.6e-12, Sum P(3) = 8.6e-12
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL PE DE +L+ F FG +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAV 310
Score = 56 (24.8 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 192 IMRDPDTGNSKGFAFINYAS-FEASDASIDAMHGQYLCN--RPISVSYAFKKDSK 243
I+ D TG S+G FI + EA +A I ++GQ PI+V +A K
Sbjct: 156 ILVDQVTGVSRGVGFIRFDKRIEAEEA-IKGLNGQKPLGAAEPITVKFANNPSQK 209
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 148 (57.2 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 39/143 (27%), Positives = 69/143 (48%)
Query: 14 PCLQSLSQTKLEG-GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVT 72
P +L L G G + D + V L +++ LF G + + + +D++T
Sbjct: 17 PAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKIT 76
Query: 73 QTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPE 132
GYGF+ + DAD AI +N +KL K I+V+ A ++ AN+++ L
Sbjct: 77 GQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSGLPKT 135
Query: 133 VDEKLLYDTFSAFGVILQTPKIM 155
+ +K + FS +G I+ T +I+
Sbjct: 136 MSQKEMEQLFSQYGRII-TSRIL 157
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
GG +G G I+V L + E+++W+LF G V NV + +D T +G+GF+
Sbjct: 278 GGAAGAGWC-IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNY 336
Query: 87 EDADYAIKIMNMIKLYGKPIRVNKASSHQ 115
++A AI +N +L + ++V+ +S Q
Sbjct: 337 DEAAMAIASLNGYRLGERVLQVSFKTSKQ 365
Score = 116 (45.9 bits), Expect = 8.7e-12, Sum P(3) = 8.7e-12
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +S+ M +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183
Query: 94 KIMNMIKLYG--KPIRVNKASS 113
K +N K G +PI V A++
Sbjct: 184 KGLNGQKPLGAAEPITVKFANN 205
Score = 76 (31.8 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD T KGF F+ +++ + +I +++G L R + VS+ K K
Sbjct: 315 KVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHK 367
Score = 69 (29.3 bits), Expect = 8.7e-12, Sum P(3) = 8.7e-12
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL PE DE +L+ F FG +
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAV 311
Score = 56 (24.8 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 192 IMRDPDTGNSKGFAFINYAS-FEASDASIDAMHGQYLCN--RPISVSYAFKKDSK 243
I+ D TG S+G FI + EA +A I ++GQ PI+V +A K
Sbjct: 156 ILVDQVTGVSRGVGFIRFDKRIEAEEA-IKGLNGQKPLGAAEPITVKFANNPSQK 209
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 146 (56.5 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 34/128 (26%), Positives = 67/128 (52%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G + D + V L +++ + LF G + + + +D++T GYGF+ ++ +
Sbjct: 32 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS +G
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGR 150
Query: 148 ILQTPKIM 155
I+ T +I+
Sbjct: 151 II-TSRIL 157
Score = 107 (42.7 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183
Query: 94 KIMNMIKLYG--KPIRVNKASS 113
K +N K G +PI V A++
Sbjct: 184 KGLNGQKPPGATEPITVKFANN 205
Score = 78 (32.5 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 306 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
Score = 65 (27.9 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAV 302
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 146 (56.5 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 34/128 (26%), Positives = 67/128 (52%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G + D + V L +++ + LF G + + + +D++T GYGF+ ++ +
Sbjct: 32 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS +G
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGR 150
Query: 148 ILQTPKIM 155
I+ T +I+
Sbjct: 151 II-TSRIL 157
Score = 107 (42.7 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183
Query: 94 KIMNMIKLYG--KPIRVNKASS 113
K +N K G +PI V A++
Sbjct: 184 KGLNGQKPPGATEPITVKFANN 205
Score = 78 (32.5 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 307 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 359
Score = 65 (27.9 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAV 303
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 146 (56.5 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 34/132 (25%), Positives = 68/132 (51%)
Query: 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
++ G + D + V L +++ LF G + + + +D++T GYGF+ +
Sbjct: 33 MQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 92
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFS 143
+ +DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS
Sbjct: 93 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFS 151
Query: 144 AFGVILQTPKIM 155
+G I+ T +I+
Sbjct: 152 QYGRII-TSRIL 162
Score = 110 (43.8 bits), Expect = 9.4e-11, Sum P(3) = 9.4e-11
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 129 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 188
Query: 94 KIMNMIKLYG--KPIRVNKASS-HQKN 117
K +N K G +PI V A++ QK+
Sbjct: 189 KGLNGQKPSGATEPITVKFANNPSQKS 215
Score = 77 (32.2 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 298 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 350
Score = 64 (27.6 bits), Expect = 9.4e-11, Sum P(3) = 9.4e-11
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAV 294
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 146 (56.5 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 34/132 (25%), Positives = 68/132 (51%)
Query: 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
++ G + D + V L +++ LF G + + + +D++T GYGF+ +
Sbjct: 40 MQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 99
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFS 143
+ +DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS
Sbjct: 100 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFS 158
Query: 144 AFGVILQTPKIM 155
+G I+ T +I+
Sbjct: 159 QYGRII-TSRIL 169
Score = 109 (43.4 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 136 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 195
Query: 94 KIMNMIKLYG--KPIRVNKASS 113
K +N K G +PI V A++
Sbjct: 196 KGLNGQKPSGATEPITVKFANN 217
Score = 78 (32.5 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 318 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 370
Score = 64 (27.6 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAV 314
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 164 (62.8 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 40/126 (31%), Positives = 75/126 (59%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YVGGLD +V+E ++ ++F +G V NV + D+ + + YGF+E+ AD A++ +
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYN-YGFVEYDDPGAADRAMQTL 145
Query: 97 NMIKLYGKPIRVNKA-----SSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
N +++ IRVN A S+ +++ +IF+G+L EV++++L FS FG + +
Sbjct: 146 NGRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEA 205
Query: 152 PKIMNM 157
+ +M
Sbjct: 206 RVMWDM 211
Score = 98 (39.6 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
I+VG L ++V++ ++ + F G V + D T +GYGF+ F DA+ A+ M
Sbjct: 178 IFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSM 237
Query: 97 NMIKLYGKPIRVNKAS 112
+ L + IR N A+
Sbjct: 238 DGEWLGSRAIRCNWAN 253
Score = 60 (26.2 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242
+GFAFI S E + +I ++G + RP+ S+ K+S
Sbjct: 337 RGFAFIKMDSHENAAQAICGLNGYNVNGRPLKCSWGKDKNS 377
Score = 40 (19.1 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 125 FIGNLDPEVDEKLLYDTFSAFGVILQT 151
++GNL P + F FG ++++
Sbjct: 305 YVGNLTPYTTANDVVPLFQNFGYVVES 331
Score = 37 (18.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 186 GNLDPEIMRDPDTGNSKGF 204
GN DP P + GF
Sbjct: 382 GNFDPSQAFSPQSAGGPGF 400
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 149 (57.5 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 37/124 (29%), Positives = 69/124 (55%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
GG GD T++VG L + ET + F + V +V + +++ T +GYGF+EF+
Sbjct: 111 GGSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSR 170
Query: 87 EDADYAIKIMNMIKLYG--KPIRVNKAS---SHQKNLDVGAN--IFIGNLDPEVDEKLLY 139
A+ A++ + + + +P R+N AS ++ + G + IF+G+L P+V + +L
Sbjct: 171 SAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLL 230
Query: 140 DTFS 143
+TF+
Sbjct: 231 ETFA 234
Score = 77 (32.2 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK--GDRHG 248
+++ D +TG SKG+ F+ + ++ M+G + +R + V A K + G ++G
Sbjct: 244 KVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNG 303
Query: 249 SAA 251
S A
Sbjct: 304 SQA 306
Score = 47 (21.6 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 15/70 (21%), Positives = 34/70 (48%)
Query: 181 ANIFIGNLDPEIMRD----P--DTGN--------SKGFAFINYASFEASDASIDAMHGQY 226
+ IF+G LD ++ + P D G KG F+ +A+ ++++ +I ++G
Sbjct: 327 STIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTV 386
Query: 227 LCNRPISVSY 236
+ + +S+
Sbjct: 387 IGKNTVRLSW 396
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 146 (56.5 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 34/128 (26%), Positives = 67/128 (52%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G + D + V L +++ + LF G + + + +D++T GYGF+ ++ +
Sbjct: 60 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 119
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS +G
Sbjct: 120 DAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGR 178
Query: 148 ILQTPKIM 155
I+ T +I+
Sbjct: 179 II-TSRIL 185
Score = 107 (42.7 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 152 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 211
Query: 94 KIMNMIKLYG--KPIRVNKASS 113
K +N K G +PI V A++
Sbjct: 212 KGLNGQKPPGATEPITVKFANN 233
Score = 78 (32.5 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 334 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 386
Score = 65 (27.9 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAV 330
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 146 (56.5 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 34/132 (25%), Positives = 68/132 (51%)
Query: 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
++ G + D + V L +++ LF G + + + +D++T GYGF+ +
Sbjct: 35 MQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 94
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFS 143
+ +DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS
Sbjct: 95 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFS 153
Query: 144 AFGVILQTPKIM 155
+G I+ T +I+
Sbjct: 154 QYGRII-TSRIL 164
Score = 110 (43.8 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 131 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 190
Query: 94 KIMNMIKLYG--KPIRVNKASS-HQKN 117
K +N K G +PI V A++ QK+
Sbjct: 191 KGLNGQKPSGATEPITVKFANNPSQKS 217
Score = 77 (32.2 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 313 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 365
Score = 64 (27.6 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAV 309
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 146 (56.5 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 34/132 (25%), Positives = 68/132 (51%)
Query: 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
++ G + D + V L +++ LF G + + + +D++T GYGF+ +
Sbjct: 35 MQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 94
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFS 143
+ +DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS
Sbjct: 95 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFS 153
Query: 144 AFGVILQTPKIM 155
+G I+ T +I+
Sbjct: 154 QYGRII-TSRIL 164
Score = 110 (43.8 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 131 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 190
Query: 94 KIMNMIKLYG--KPIRVNKASS-HQKN 117
K +N K G +PI V A++ QK+
Sbjct: 191 KGLNGQKPSGATEPITVKFANNPSQKS 217
Score = 77 (32.2 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 313 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 365
Score = 64 (27.6 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAV 309
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 146 (56.5 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 34/128 (26%), Positives = 67/128 (52%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G + D + V L +++ + LF G + + + +D++T GYGF+ ++ +
Sbjct: 61 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 120
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS +G
Sbjct: 121 DAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGR 179
Query: 148 ILQTPKIM 155
I+ T +I+
Sbjct: 180 II-TSRIL 186
Score = 107 (42.7 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 153 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 212
Query: 94 KIMNMIKLYG--KPIRVNKASS 113
K +N K G +PI V A++
Sbjct: 213 KGLNGQKPPGATEPITVKFANN 234
Score = 78 (32.5 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 335 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 387
Score = 65 (27.9 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAV 331
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 146 (56.5 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 34/128 (26%), Positives = 67/128 (52%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G + D + V L +++ + LF G + + + +D++T GYGF+ ++ +
Sbjct: 60 GNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPK 119
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS +G
Sbjct: 120 DAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGR 178
Query: 148 ILQTPKIM 155
I+ T +I+
Sbjct: 179 II-TSRIL 185
Score = 102 (41.0 bits), Expect = 8.8e-10, Sum P(3) = 8.8e-10
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 152 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAI 211
Query: 94 KIMNMIK--LYGKPIRVNKASS 113
K +N K +PI V A++
Sbjct: 212 KGLNGQKPPAATEPITVKFANN 233
Score = 78 (32.5 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 335 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 387
Score = 65 (27.9 bits), Expect = 8.8e-10, Sum P(3) = 8.8e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAV 331
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 146 (56.5 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 34/132 (25%), Positives = 68/132 (51%)
Query: 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
++ G + D + V L +++ LF G + + + +D++T GYGF+ +
Sbjct: 40 MQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 99
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFS 143
+ +DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS
Sbjct: 100 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFS 158
Query: 144 AFGVILQTPKIM 155
+G I+ T +I+
Sbjct: 159 QYGRII-TSRIL 169
Score = 110 (43.8 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 136 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 195
Query: 94 KIMNMIKLYG--KPIRVNKASS-HQKN 117
K +N K G +PI V A++ QK+
Sbjct: 196 KGLNGQKPSGATEPITVKFANNPSQKS 222
Score = 77 (32.2 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 318 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 370
Score = 64 (27.6 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAV 314
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 146 (56.5 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 34/132 (25%), Positives = 68/132 (51%)
Query: 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
++ G + D + V L +++ LF G + + + +D++T GYGF+ +
Sbjct: 28 MQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFS 143
+ +DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS
Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFS 146
Query: 144 AFGVILQTPKIM 155
+G I+ T +I+
Sbjct: 147 QYGRII-TSRIL 157
Score = 110 (43.8 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183
Query: 94 KIMNMIKLYG--KPIRVNKASS-HQKN 117
K +N K G +PI V A++ QK+
Sbjct: 184 KGLNGQKPSGATEPITVKFANNPSQKS 210
Score = 77 (32.2 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 320 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 372
Score = 64 (27.6 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAV 316
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 146 (56.5 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 34/132 (25%), Positives = 68/132 (51%)
Query: 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
++ G + D + V L +++ LF G + + + +D++T GYGF+ +
Sbjct: 28 MQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFS 143
+ +DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS
Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFS 146
Query: 144 AFGVILQTPKIM 155
+G I+ T +I+
Sbjct: 147 QYGRII-TSRIL 157
Score = 110 (43.8 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183
Query: 94 KIMNMIKLYG--KPIRVNKASS-HQKN 117
K +N K G +PI V A++ QK+
Sbjct: 184 KGLNGQKPSGATEPITVKFANNPSQKS 210
Score = 77 (32.2 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 320 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 372
Score = 64 (27.6 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAV 316
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 143 (55.4 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 36/122 (29%), Positives = 64/122 (52%)
Query: 31 GD-GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
GD G + V L +++ + LF G V + + +D+V GYGF+ ++ +DA
Sbjct: 15 GDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 90 DYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
+ AI +N ++L K I+V+ A + + AN++I L + +K + D FS FG I+
Sbjct: 75 ERAINTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMFSRFGRII 133
Query: 150 QT 151
+
Sbjct: 134 NS 135
Score = 98 (39.6 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
Identities = 26/89 (29%), Positives = 47/89 (52%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +Y+ GL +++ + ++F + G ++N + D+ T +G FI F +A+ AI
Sbjct: 105 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
Query: 94 KIMNMIKLYG--KPIRVNKASSHQKNLDV 120
N K G +PI V A++ +N +V
Sbjct: 165 TSFNGHKPPGSSEPITVKFAANPNQNKNV 193
Score = 78 (32.5 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ ++E + +I +++G L ++ + VS+ K K
Sbjct: 274 KVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 60 (26.2 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 17/66 (25%), Positives = 35/66 (53%)
Query: 174 QKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYL--CNRP 231
QK+++ + F ++ ++ D TG S+G AFI + ++ +I + +G + P
Sbjct: 119 QKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEP 178
Query: 232 ISVSYA 237
I+V +A
Sbjct: 179 ITVKFA 184
Score = 60 (26.2 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 117 NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
N G IFI NL + DE +L+ F FG +
Sbjct: 239 NASSGWCIFIYNLGQDADEGILWQMFGPFGAV 270
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 146 (56.5 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 34/132 (25%), Positives = 68/132 (51%)
Query: 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
++ G + D + V L +++ LF G + + + +D++T GYGF+ +
Sbjct: 35 MQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 94
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFS 143
+ +DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS
Sbjct: 95 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFS 153
Query: 144 AFGVILQTPKIM 155
+G I+ T +I+
Sbjct: 154 QYGRII-TSRIL 164
Score = 110 (43.8 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 131 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 190
Query: 94 KIMNMIKLYG--KPIRVNKASS-HQKN 117
K +N K G +PI V A++ QK+
Sbjct: 191 KGLNGQKPSGATEPITVKFANNPSQKS 217
Score = 77 (32.2 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 327 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 379
Score = 64 (27.6 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAV 323
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 146 (56.5 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 34/132 (25%), Positives = 68/132 (51%)
Query: 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
++ G + D + V L +++ LF G + + + +D++T GYGF+ +
Sbjct: 35 MQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 94
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFS 143
+ +DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS
Sbjct: 95 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFS 153
Query: 144 AFGVILQTPKIM 155
+G I+ T +I+
Sbjct: 154 QYGRII-TSRIL 164
Score = 110 (43.8 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 131 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 190
Query: 94 KIMNMIKLYG--KPIRVNKASS-HQKN 117
K +N K G +PI V A++ QK+
Sbjct: 191 KGLNGQKPSGATEPITVKFANNPSQKS 217
Score = 77 (32.2 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 327 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 379
Score = 64 (27.6 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAV 323
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 146 (56.5 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 34/132 (25%), Positives = 68/132 (51%)
Query: 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
++ G + D + V L +++ LF G + + + +D++T GYGF+ +
Sbjct: 51 MQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 110
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFS 143
+ +DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS
Sbjct: 111 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFS 169
Query: 144 AFGVILQTPKIM 155
+G I+ T +I+
Sbjct: 170 QYGRII-TSRIL 180
Score = 110 (43.8 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 147 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 206
Query: 94 KIMNMIKLYG--KPIRVNKASS-HQKN 117
K +N K G +PI V A++ QK+
Sbjct: 207 KGLNGQKPSGATEPITVKFANNPSQKS 233
Score = 77 (32.2 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 329 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 381
Score = 64 (27.6 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAV 325
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 146 (56.5 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 34/132 (25%), Positives = 68/132 (51%)
Query: 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
++ G + D + V L +++ LF G + + + +D++T GYGF+ +
Sbjct: 39 MQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 98
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFS 143
+ +DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS
Sbjct: 99 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFS 157
Query: 144 AFGVILQTPKIM 155
+G I+ T +I+
Sbjct: 158 QYGRII-TSRIL 168
Score = 110 (43.8 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 135 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 194
Query: 94 KIMNMIKLYG--KPIRVNKASS-HQKN 117
K +N K G +PI V A++ QK+
Sbjct: 195 KGLNGQKPSGATEPITVKFANNPSQKS 221
Score = 77 (32.2 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 331 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 383
Score = 64 (27.6 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAV 327
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 146 (56.5 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 34/132 (25%), Positives = 68/132 (51%)
Query: 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
++ G + D + V L +++ LF G + + + +D++T GYGF+ +
Sbjct: 40 MQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 99
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFS 143
+ +DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS
Sbjct: 100 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFS 158
Query: 144 AFGVILQTPKIM 155
+G I+ T +I+
Sbjct: 159 QYGRII-TSRIL 169
Score = 110 (43.8 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 136 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 195
Query: 94 KIMNMIKLYG--KPIRVNKASS-HQKN 117
K +N K G +PI V A++ QK+
Sbjct: 196 KGLNGQKPSGATEPITVKFANNPSQKS 222
Score = 77 (32.2 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 332 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 384
Score = 64 (27.6 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAV 328
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 146 (56.5 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 34/132 (25%), Positives = 68/132 (51%)
Query: 24 LEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEF 83
++ G + D + V L +++ LF G + + + +D++T GYGF+ +
Sbjct: 40 MQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 99
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFS 143
+ +DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS
Sbjct: 100 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFS 158
Query: 144 AFGVILQTPKIM 155
+G I+ T +I+
Sbjct: 159 QYGRII-TSRIL 169
Score = 110 (43.8 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 136 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 195
Query: 94 KIMNMIKLYG--KPIRVNKASS-HQKN 117
K +N K G +PI V A++ QK+
Sbjct: 196 KGLNGQKPSGATEPITVKFANNPSQKS 222
Score = 77 (32.2 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 332 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 384
Score = 64 (27.6 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAV 328
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 173 (66.0 bits), Expect = 9.7e-12, Sum P(2) = 9.7e-12
Identities = 50/157 (31%), Positives = 78/157 (49%)
Query: 32 DGDA-TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDAD 90
DG T+YVG L V+E L+ +LF Q GP + M + + + Y F+EF DA
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAA 62
Query: 91 YAIKIMNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
A+ MN K+ GK ++VN A SS +K+ ++F+G+L PE+ + + F+ FG
Sbjct: 63 AALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGK 122
Query: 148 ILQTPKIMNMI----KLYGKPIRVNKASSHQKNLDVG 180
I + +M K YG NK + + +G
Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 159
Score = 100 (40.3 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++VG L +++ + F G + + + KD T +GYGF+ F + DA+ AI M
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 97 NMIKLYGKPIRVNKAS 112
L G+ IR N A+
Sbjct: 159 GGQWLGGRQIRTNWAT 174
Score = 86 (35.3 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 189 DPEIMRDPDTGNSKGFAFIN-YASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F++ Y +A +A + M GQ+L R I ++A +K
Sbjct: 125 DARVVKDMATGKSKGYGFVSFYNKLDAENAIVH-MGGQWLGGRQIRTNWATRK 176
Score = 71 (30.1 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 155 MNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEI 192
MN K+ GK ++VN A SS +K+ ++F+G+L PEI
Sbjct: 68 MNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEI 108
Score = 47 (21.6 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + ++L+ TFS FG I++
Sbjct: 207 VYCGGIASGLTDQLMRQTFSPFGQIME 233
Score = 42 (19.8 bits), Expect = 9.7e-12, Sum P(2) = 9.7e-12
Identities = 6/23 (26%), Positives = 18/23 (78%)
Query: 202 KGFAFINYASFEASDASIDAMHG 224
KG++F+ +++ E++ +I +++G
Sbjct: 240 KGYSFVRFSTHESAAHAIVSVNG 262
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 134 (52.2 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 45/141 (31%), Positives = 69/141 (48%)
Query: 25 EGGGESGDGDATIYVGGLDDKVSETLMWELFVQSG-PVVNVHMPKDRVTQTHQGYGFIEF 83
EGG E + +YVG L SE + ELF G PV + + D+ + Y FIE+
Sbjct: 71 EGGREVSN--KILYVGNLPKSASEETIQELFSVGGNPVKTIKILNDK-NKAGFNYAFIEY 127
Query: 84 MGEEDADYAIKIMNMIKLYGKPIRVNKA------SSHQKNLDVGA-NIFIGNLDPEVDEK 136
E AD A+ +N + I+VN A + + N + NIF+G+L PEV+++
Sbjct: 128 DTNEVADMALNTLNGRLVDDVEIKVNWAFQSAAIAGNPNNTEEPLFNIFVGDLSPEVNDE 187
Query: 137 LLYDTFSAFGVILQTPKIMNM 157
L + FS F + Q + +M
Sbjct: 188 GLRNAFSKFESLKQAHVMWDM 208
Score = 113 (44.8 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
I+VG L +V++ + F + + H+ D T +GYGF+ F + DA+ A++ M
Sbjct: 175 IFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTM 234
Query: 97 NMIKLYGKPIRVNKASSHQK 116
N L G+ IR N AS Q+
Sbjct: 235 NGEWLCGRAIRCNWASHKQQ 254
Score = 94 (38.1 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 15/56 (26%), Positives = 32/56 (57%)
Query: 192 IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRH 247
+M D T S+G+ F+ + + ++ ++ M+G++LC R I ++A K + +H
Sbjct: 204 VMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWASHKQQQQQQH 259
Score = 44 (20.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSY 236
+G AF+ Y + E + +I + G L RP+ +
Sbjct: 447 RGCAFVKYDTHERAALAIIQLAGFNLNGRPLKCGW 481
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 143 (55.4 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 36/122 (29%), Positives = 64/122 (52%)
Query: 31 GD-GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
GD G + V L +++ + LF G V + + +D+V GYGF+ ++ +DA
Sbjct: 42 GDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 101
Query: 90 DYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
+ AI +N ++L K I+V+ A + + AN++I L + +K + D FS FG I+
Sbjct: 102 ERAINTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMFSRFGRII 160
Query: 150 QT 151
+
Sbjct: 161 NS 162
Score = 98 (39.6 bits), Expect = 5.6e-09, Sum P(3) = 5.6e-09
Identities = 26/89 (29%), Positives = 47/89 (52%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +Y+ GL +++ + ++F + G ++N + D+ T +G FI F +A+ AI
Sbjct: 132 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 191
Query: 94 KIMNMIKLYG--KPIRVNKASSHQKNLDV 120
N K G +PI V A++ +N +V
Sbjct: 192 TSFNGHKPPGSSEPITVKFAANPNQNKNV 220
Score = 78 (32.5 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ ++E + +I +++G L ++ + VS+ K K
Sbjct: 301 KVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 353
Score = 60 (26.2 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 17/66 (25%), Positives = 35/66 (53%)
Query: 174 QKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYL--CNRP 231
QK+++ + F ++ ++ D TG S+G AFI + ++ +I + +G + P
Sbjct: 146 QKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEP 205
Query: 232 ISVSYA 237
I+V +A
Sbjct: 206 ITVKFA 211
Score = 60 (26.2 bits), Expect = 5.6e-09, Sum P(3) = 5.6e-09
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 117 NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
N G IFI NL + DE +L+ F FG +
Sbjct: 266 NASSGWCIFIYNLGQDADEGILWQMFGPFGAV 297
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 173 (66.0 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 50/157 (31%), Positives = 78/157 (49%)
Query: 32 DGDA-TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDAD 90
DG T+YVG L V+E L+ +LF Q GP + M + + + Y F+EF DA
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAA 62
Query: 91 YAIKIMNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
A+ MN K+ GK ++VN A SS +K+ ++F+G+L PE+ + + F+ FG
Sbjct: 63 AALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGK 122
Query: 148 ILQTPKIMNMI----KLYGKPIRVNKASSHQKNLDVG 180
I + +M K YG NK + + +G
Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 159
Score = 100 (40.3 bits), Expect = 0.00034, Sum P(3) = 0.00033
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++VG L +++ + F G + + + KD T +GYGF+ F + DA+ AI M
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 97 NMIKLYGKPIRVNKAS 112
L G+ IR N A+
Sbjct: 159 GGQWLGGRQIRTNWAT 174
Score = 86 (35.3 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 189 DPEIMRDPDTGNSKGFAFIN-YASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F++ Y +A +A + M GQ+L R I ++A +K
Sbjct: 125 DARVVKDMATGKSKGYGFVSFYNKLDAENAIVH-MGGQWLGGRQIRTNWATRK 176
Score = 71 (30.1 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 155 MNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEI 192
MN K+ GK ++VN A SS +K+ ++F+G+L PEI
Sbjct: 68 MNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEI 108
Score = 47 (21.6 bits), Expect = 0.00034, Sum P(3) = 0.00033
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + ++L+ TFS FG I++
Sbjct: 207 VYCGGIASGLTDQLMRQTFSPFGQIME 233
Score = 42 (19.8 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 6/23 (26%), Positives = 18/23 (78%)
Query: 202 KGFAFINYASFEASDASIDAMHG 224
KG++F+ +++ E++ +I +++G
Sbjct: 240 KGYSFVRFSTHESAAHAIVSVNG 262
>MGI|MGI:2447622 [details] [associations]
symbol:Rbm11 "RNA binding motif protein 11" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:2447622 GO:GO:0007275
GO:GO:0030154 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH466521
HSSP:P33240 CTD:54033 eggNOG:NOG245318 HOGENOM:HOG000146448
HOVERGEN:HBG061506 EMBL:AC166995 EMBL:BC050779 EMBL:AK039297
IPI:IPI00133149 RefSeq:NP_938044.1 UniGene:Mm.273214
ProteinModelPortal:Q80YT9 SMR:Q80YT9 Ensembl:ENSMUST00000046378
Ensembl:ENSMUST00000114253 GeneID:224344 KEGG:mmu:224344
UCSC:uc007zro.1 GeneTree:ENSGT00690000102191 NextBio:377164
Bgee:Q80YT9 Genevestigator:Q80YT9 Uniprot:Q80YT9
Length = 238
Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 32/77 (41%), Positives = 52/77 (67%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ D T++VG L+ +V E +++ELF+Q+GP+ V + KDR + + +GF+ F E Y
Sbjct: 7 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGKP-KSFGFVCFKHPESVSY 65
Query: 92 AIKIMNMIKLYGKPIRV 108
AI ++N I+LYG+PI V
Sbjct: 66 AIALLNGIRLYGRPINV 82
>RGD|1305195 [details] [associations]
symbol:Rbm11 "RNA binding motif protein 11" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305195 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:YRFGSSR OrthoDB:EOG4Q58Q1 GeneTree:ENSGT00690000102191
IPI:IPI00363165 Ensembl:ENSRNOT00000047240 UCSC:RGD:1305195
Uniprot:D3ZQ24
Length = 238
Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 32/77 (41%), Positives = 52/77 (67%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ D T++VG L+ +V E +++ELF+Q+GP+ V + KDR + + +GF+ F E Y
Sbjct: 7 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGKP-KSFGFVCFKHPESVSY 65
Query: 92 AIKIMNMIKLYGKPIRV 108
AI ++N I+LYG+PI V
Sbjct: 66 AIALLNGIRLYGRPINV 82
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 146 (56.5 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 39/150 (26%), Positives = 71/150 (47%)
Query: 8 QAGISTPCLQSLSQTKLEGG-GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHM 66
Q +P Q ++QTK E + +++GGL+ +E + E F + G V ++ +
Sbjct: 131 QPSSQSPPQQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKI 190
Query: 67 PKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFI 126
KD T +G+GF+ F D +K +++ GK I +A + D IF+
Sbjct: 191 MKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILD--GKVIDPKRAIPRDEQ-DKTGKIFV 247
Query: 127 GNLDPEVDEKLLYDTFSAFGVILQTPKIMN 156
G + P+V K + FS +G I+ +++
Sbjct: 248 GGIGPDVRPKEFEEFFSQWGTIIDAQLMLD 277
Score = 80 (33.2 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASD 216
+D ++M D DTG S+GF F+ Y S +A D
Sbjct: 270 IDAQLMLDKDTGQSRGFGFVTYDSADAVD 298
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 141 (54.7 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 34/119 (28%), Positives = 62/119 (52%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G + V L +++ + LF G V + + +D+V GYGF+ ++ +DA+ A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
I +N ++L K I+V+ A + + AN++I L + +K + D FS FG I+ +
Sbjct: 78 INTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRNMTQKDVEDMFSRFGRIINS 135
Score = 99 (39.9 bits), Expect = 2.9e-09, Sum P(3) = 2.9e-09
Identities = 26/89 (29%), Positives = 47/89 (52%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +Y+ GL +++ + ++F + G ++N + D+ T +G FI F +A+ AI
Sbjct: 105 DANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
Query: 94 KIMNMIKLYG--KPIRVNKASSHQKNLDV 120
N K G +PI V A++ +N +V
Sbjct: 165 TSFNGHKPPGSSEPITVKFAANPNQNKNV 193
Score = 78 (32.5 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ ++E + +I +++G L ++ + VS+ K K
Sbjct: 274 KVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 60 (26.2 bits), Expect = 2.9e-09, Sum P(3) = 2.9e-09
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 117 NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
N G IFI NL + DE +L+ F FG +
Sbjct: 239 NASSGWCIFIYNLGQDADEGILWQMFGPFGAV 270
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 141 (54.7 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 34/119 (28%), Positives = 62/119 (52%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G + V L +++ + LF G V + + +D+V GYGF+ ++ +DA+ A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
I +N ++L K I+V+ A + + AN++I L + +K + D FS FG I+ +
Sbjct: 78 INTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRSMTQKDVEDMFSRFGRIINS 135
Score = 98 (39.6 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
Identities = 26/89 (29%), Positives = 47/89 (52%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +Y+ GL +++ + ++F + G ++N + D+ T +G FI F +A+ AI
Sbjct: 105 DANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
Query: 94 KIMNMIKLYG--KPIRVNKASSHQKNLDV 120
N K G +PI V A++ +N +V
Sbjct: 165 TNFNGHKPPGSSEPITVKFAANPNQNKNV 193
Score = 78 (32.5 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ ++E + +I +++G L ++ + VS+ K K
Sbjct: 274 KVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 60 (26.2 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 117 NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
N G IFI NL + DE +L+ F FG +
Sbjct: 239 NASSGWCIFIYNLGQDADEGILWQMFGPFGAV 270
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 139 (54.0 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 33/119 (27%), Positives = 62/119 (52%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G + V L +++ + LF G + + + +D+V GYGF+ ++ +DA+ A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
I +N ++L K I+V+ A + + AN++I L + +K + D FS FG I+ +
Sbjct: 78 INTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMFSPFGRIINS 135
Score = 96 (38.9 bits), Expect = 4.1e-09, Sum P(3) = 4.1e-09
Identities = 26/89 (29%), Positives = 46/89 (51%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +Y+ GL +++ + ++F G ++N + D+ T +G FI F +A+ AI
Sbjct: 105 DANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
Query: 94 KIMNMIKLYG--KPIRVNKASSHQKNLDV 120
N K G +PI V A++ +N +V
Sbjct: 165 TSFNGHKPPGSSEPITVKFAANPNQNKNV 193
Score = 80 (33.2 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ ++E + +I +++G L ++ + VS+ K K
Sbjct: 274 KVIRDFNTNKCKGFGFVTMTNYEEASMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 60 (26.2 bits), Expect = 4.1e-09, Sum P(3) = 4.1e-09
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 117 NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
N G IFI NL + DE +L+ F FG +
Sbjct: 239 NASSGWCIFIYNLGQDADEGILWQMFGPFGAV 270
>TAIR|locus:2023903 [details] [associations]
symbol:ATE1 "ATPase E1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 UniGene:At.66943
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK228412 IPI:IPI00541371
RefSeq:NP_563931.2 ProteinModelPortal:Q0WRA3 SMR:Q0WRA3
STRING:Q0WRA3 PaxDb:Q0WRA3 PRIDE:Q0WRA3 EnsemblPlants:AT1G13690.1
GeneID:837930 KEGG:ath:AT1G13690 TAIR:At1g13690 InParanoid:Q0WRA3
OMA:AQPIWAD PhylomeDB:Q0WRA3 ProtClustDB:CLSN2690943
Genevestigator:Q0WRA3 Uniprot:Q0WRA3
Length = 177
Score = 160 (61.4 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YVGGL D+V+E+++ F+ G + +V P D+ Q H+ +GF+ F+ EDA A+
Sbjct: 14 TLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDN 73
Query: 96 MNMIKLYGKPIRVNKA 111
M+ +LYG+ + VN A
Sbjct: 74 MDGAELYGRVLTVNYA 89
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 140 (54.3 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 34/119 (28%), Positives = 62/119 (52%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G + V L +++ + LF G V + + +D+V GYGF+ ++ +DA+ A
Sbjct: 26 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 85
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
I +N ++L K I+V+ A + + AN++I L + +K + D FS FG I+ +
Sbjct: 86 INTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMFSRFGRIINS 143
Score = 98 (39.6 bits), Expect = 4.3e-09, Sum P(3) = 4.3e-09
Identities = 26/89 (29%), Positives = 47/89 (52%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +Y+ GL +++ + ++F + G ++N + D+ T +G FI F +A+ AI
Sbjct: 113 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 172
Query: 94 KIMNMIKLYG--KPIRVNKASSHQKNLDV 120
N K G +PI V A++ +N +V
Sbjct: 173 TSFNGHKPPGSSEPITVKFAANPNQNKNV 201
Score = 78 (32.5 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ ++E + +I +++G L ++ + VS+ K K
Sbjct: 282 KVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 334
Score = 60 (26.2 bits), Expect = 4.3e-09, Sum P(3) = 4.3e-09
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 117 NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
N G IFI NL + DE +L+ F FG +
Sbjct: 247 NASSGWCIFIYNLGQDADEGILWQMFGPFGAV 278
>UNIPROTKB|F1N209 [details] [associations]
symbol:RBM11 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:YRFGSSR
GeneTree:ENSGT00690000102191 EMBL:DAAA02000527 IPI:IPI00911874
RefSeq:XP_003581718.1 UniGene:Bt.104085 Ensembl:ENSBTAT00000048660
GeneID:100850231 KEGG:bta:100850231 NextBio:20926533 Uniprot:F1N209
Length = 246
Score = 169 (64.5 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 32/77 (41%), Positives = 52/77 (67%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ D T++VG L+ +V E +++ELF+Q+GP+ V + KDR + + +GF+ F E Y
Sbjct: 7 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKP-KSFGFVCFKHPESVSY 65
Query: 92 AIKIMNMIKLYGKPIRV 108
AI ++N I+LYG+PI V
Sbjct: 66 AIALLNGIRLYGRPINV 82
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 160 (61.4 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 43/135 (31%), Positives = 68/135 (50%)
Query: 18 SLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQG 77
+L G S A++YVG L V+E ++++ F + + +V + KD +
Sbjct: 7 ALHAADASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLC 66
Query: 78 YGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN---KASSHQKNLDVGANIFIGNLDPEVD 134
YG+ F+ +DA+ AI+ N L GK IRV +A ++N VG N+F+ NL V
Sbjct: 67 YGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRN-GVG-NVFVKNLPESVT 124
Query: 135 EKLLYDTFSAFGVIL 149
+L D F FG I+
Sbjct: 125 NAVLQDMFKKFGNIV 139
Score = 131 (51.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 34/121 (28%), Positives = 65/121 (53%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+G ++V L + V+ ++ ++F + G +V+ + ++ +GYGF++F E+ A
Sbjct: 109 NGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKS-RGYGFVQFEQEDAAHA 167
Query: 92 AIKIMNMIKLYGKPIRVNK---ASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
AI+ +N + K I V K + K + N+++ NLD +V E LL + F+ FG I
Sbjct: 168 AIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKI 227
Query: 149 L 149
+
Sbjct: 228 V 228
Score = 62 (26.9 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 11/47 (23%), Positives = 25/47 (53%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G S+G+ F+ + +A+ A+I ++ + ++ I V KK +
Sbjct: 147 EDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR 193
>UNIPROTKB|J9PA68 [details] [associations]
symbol:RBM11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:54033
OMA:YRFGSSR GeneTree:ENSGT00690000102191 EMBL:AAEX03016434
RefSeq:XP_535558.1 ProteinModelPortal:J9PA68
Ensembl:ENSCAFT00000043040 GeneID:478383 KEGG:cfa:478383
Uniprot:J9PA68
Length = 238
Score = 167 (63.8 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 32/77 (41%), Positives = 52/77 (67%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ D T++VG L+ +V E +++ELF+Q+GP+ V + KDR + + +GF+ F E Y
Sbjct: 7 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKP-KTFGFVCFKHPESVSY 65
Query: 92 AIKIMNMIKLYGKPIRV 108
AI ++N I+LYG+PI V
Sbjct: 66 AIALLNGIRLYGRPINV 82
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 102 (41.0 bits), Expect = 2.6e-11, Sum P(3) = 2.6e-11
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 26 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 84
Query: 97 NMIKLYGKPIRVNKA 111
N +L GK I V +A
Sbjct: 85 NGKELNGKQIYVGRA 99
Score = 80 (33.2 bits), Expect = 2.6e-11, Sum P(3) = 2.6e-11
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 163 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 207
Score = 69 (29.3 bits), Expect = 2.6e-11, Sum P(3) = 2.6e-11
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L FS FG I K+M
Sbjct: 126 GVNLYVKNLDDGIDDERLRKEFSPFGTITSA-KVM 159
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 139 (54.0 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 33/128 (25%), Positives = 66/128 (51%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G + D + L +++ + LF G + + + +D++T GYGF+ ++ +
Sbjct: 32 GNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS +G
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGR 150
Query: 148 ILQTPKIM 155
I+ T +I+
Sbjct: 151 II-TSRIL 157
Score = 107 (42.7 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183
Query: 94 KIMNMIKLYG--KPIRVNKASS 113
K +N K G +PI V A++
Sbjct: 184 KGLNGQKPPGATEPITVKFANN 205
Score = 78 (32.5 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 306 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
Score = 65 (27.9 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAV 302
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 139 (54.0 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 33/128 (25%), Positives = 66/128 (51%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G + D + L +++ + LF G + + + +D++T GYGF+ ++ +
Sbjct: 32 GNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS +G
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGR 150
Query: 148 ILQTPKIM 155
I+ T +I+
Sbjct: 151 II-TSRIL 157
Score = 107 (42.7 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183
Query: 94 KIMNMIKLYG--KPIRVNKASS 113
K +N K G +PI V A++
Sbjct: 184 KGLNGQKPPGATEPITVKFANN 205
Score = 78 (32.5 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 306 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
Score = 65 (27.9 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAV 302
>ASPGD|ASPL0000007134 [details] [associations]
symbol:AN6256 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACD01000107 EMBL:BN001301
GO:GO:0016853 HOGENOM:HOG000276232 eggNOG:NOG331137
OrthoDB:EOG4TJ03G RefSeq:XP_663860.1 ProteinModelPortal:Q5AZM4
STRING:Q5AZM4 EnsemblFungi:CADANIAT00006735 GeneID:2871037
KEGG:ani:AN6256.2 OMA:TAVWEQE Uniprot:Q5AZM4
Length = 153
Score = 157 (60.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 37/89 (41%), Positives = 54/89 (60%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQT---HQGYGFIEFMGEEDADYA 92
T+YVGGLD VS + E FV G VV++ +PK + + H+G+G++EF EDA A
Sbjct: 10 TVYVGGLDQAVSVQTLAEAFVPFGEVVDITLPKPDLPNSNDNHRGFGYVEFDSPEDAKEA 69
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVG 121
I M+ +LYG+ I+V A QK+ + G
Sbjct: 70 IDNMDGSELYGRTIKVAPAKP-QKDANEG 97
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 139 (54.0 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 38/134 (28%), Positives = 66/134 (49%)
Query: 20 SQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYG 79
++T+ G + ++YVG L V+E + + F + PVV+VH+ ++ VT Y
Sbjct: 6 TETQALGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYA 65
Query: 80 FIEFMGEEDADYAIKIMNMIKLYGKPIRV---NKASSHQKNLDVG-ANIFIGNLDPEVDE 135
+I F A A+ +N L GK +R+ + ++++ G AN+++ NLD +
Sbjct: 66 YINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITS 125
Query: 136 KLLYDTFSAFGVIL 149
L F FG IL
Sbjct: 126 SCLERMFCPFGSIL 139
Score = 112 (44.5 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 34/135 (25%), Positives = 66/135 (48%)
Query: 20 SQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYG 79
SQ L + G A +YV LD ++ + + +F G +++ + ++ Q+ +G+G
Sbjct: 97 SQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEEN-GQS-KGFG 154
Query: 80 FIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQK------NLDVGANIFIGNLDPEV 133
F++F E+ A A ++ +YGK + V K + + N D N+++ NL V
Sbjct: 155 FVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQD-STNVYVKNLIETV 213
Query: 134 DEKLLYDTFSAFGVI 148
+ L+ FS +G +
Sbjct: 214 TDDCLHTLFSQYGTV 228
Score = 83 (34.3 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 192 IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+MRD G S+GF F+N+ + E + +++++ G L ++ + V A KKD +
Sbjct: 233 VMRD-GMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDER 283
Score = 76 (31.8 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 18/78 (23%), Positives = 38/78 (48%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAERLLA 256
+ G SKGF F+ + + +++ ++ A+HG + + + V+ KD + G+ +
Sbjct: 146 ENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVY 205
Query: 257 AQNPLSQA--DRPHQLFA 272
+N + D H LF+
Sbjct: 206 VKNLIETVTDDCLHTLFS 223
>FB|FBgn0028382 [details] [associations]
symbol:cyp33 "cyclophilin-33" species:7227 "Drosophila
melanogaster" [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=IEA;NAS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0006457 "protein folding" evidence=IEA;NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006911 "phagocytosis, engulfment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 EMBL:AE013599 GO:GO:0006457 GO:GO:0006911
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00690000101651
KO:K09564 EMBL:AF182826 EMBL:AY061421 RefSeq:NP_523773.1
UniGene:Dm.2854 ProteinModelPortal:Q9V3G3 SMR:Q9V3G3 DIP:DIP-21959N
IntAct:Q9V3G3 MINT:MINT-1643160 STRING:Q9V3G3 PaxDb:Q9V3G3
PRIDE:Q9V3G3 EnsemblMetazoa:FBtr0086945 GeneID:36984
KEGG:dme:Dmel_CG4886 UCSC:CG4886-RA CTD:36984 FlyBase:FBgn0028382
InParanoid:Q9V3G3 OMA:AFIEFEL OrthoDB:EOG4QV9TN PhylomeDB:Q9V3G3
GenomeRNAi:36984 NextBio:801358 Bgee:Q9V3G3 GermOnline:CG4886
Uniprot:Q9V3G3
Length = 300
Score = 171 (65.3 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 36/76 (47%), Positives = 49/76 (64%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
TIYVGGL D+V+E L+ F+ G + ++ MP D +Q H+G+ FIE+ EDA AI
Sbjct: 7 TIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDN 66
Query: 96 MNMIKLYGKPIRVNKA 111
MN +L G+ IRVN A
Sbjct: 67 MNDSELCGRTIRVNLA 82
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 138 (53.6 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 32/120 (26%), Positives = 60/120 (50%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D + V L +S+ + LF G V + + +D+V GYGF+ ++ DA+
Sbjct: 31 DSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAER 90
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
AI +N ++L K I+V+ A ++ AN++I L + +K + + F +G I+ +
Sbjct: 91 AISTLNGLRLQSKTIKVSYARPSSDSIK-DANLYISGLPKTMTQKDVEEMFGRYGRIINS 149
Score = 91 (37.1 bits), Expect = 6.3e-08, Sum P(3) = 6.3e-08
Identities = 36/128 (28%), Positives = 63/128 (49%)
Query: 6 EIQAGIST-PCLQSLSQT-KLEGGGESGDG--DATIYVGGLDDKVSETLMWELFVQSGPV 61
+ + IST L+ S+T K+ S D DA +Y+ GL +++ + E+F + G +
Sbjct: 87 DAERAISTLNGLRLQSKTIKVSYARPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRI 146
Query: 62 VNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN---KASSHQ-KN 117
+N + D+ + +G FI F +A+ AIK +N K G ++ AS +Q KN
Sbjct: 147 INSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQKPPGAAEQMTVKFAASPNQVKN 206
Query: 118 LDVGANIF 125
V ++
Sbjct: 207 TQVIPQVY 214
Score = 76 (31.8 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +E + +I +++G L ++ + VS+ K K
Sbjct: 288 KVIRDFNTNKCKGFGFVTMTHYEEAAMAIASLNGYRLGDKILQVSFKTSKSHK 340
Score = 59 (25.8 bits), Expect = 6.3e-08, Sum P(3) = 6.3e-08
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 117 NLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
N G IFI NL + DE +L+ F FG +
Sbjct: 253 NSSSGWCIFIYNLGQDADEGILWQMFGPFGAV 284
Score = 51 (23.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYAS-FEASDASIDAMHGQ 225
++ ++ D +G S+G AFI + EA DA D ++GQ
Sbjct: 147 INSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKD-LNGQ 184
>UNIPROTKB|E9PK21 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AL035404 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL033527 EMBL:AL049824 HGNC:HGNC:9258
ChiTaRS:PPIE IPI:IPI00985437 ProteinModelPortal:E9PK21 SMR:E9PK21
Ensembl:ENST00000470213 ArrayExpress:E9PK21 Bgee:E9PK21
Uniprot:E9PK21
Length = 208
Score = 155 (59.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YVGGL ++V + ++ F+ G + ++ +P D T+ H+G+ F+EF EDA AI M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 97 NMIKLYGKPIRVNKA 111
N +L+G+ IRVN A
Sbjct: 68 NESELFGRTIRVNLA 82
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 138 (53.6 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 33/125 (26%), Positives = 66/125 (52%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQ-GYGFIEFMGEEDAD 90
D + V L +++ + LF G + + + +D++T+ GYGF+ ++ +DA+
Sbjct: 63 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAE 122
Query: 91 YAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
AI +N ++L K I+V+ A ++ AN+++ L + +K L FS +G I+
Sbjct: 123 KAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRII- 180
Query: 151 TPKIM 155
T +I+
Sbjct: 181 TSRIL 185
Score = 109 (43.4 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 152 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 211
Query: 94 KIMNMIKLYG--KPIRVNKASSHQKNLD 119
K +N K G +PI V A++ + ++
Sbjct: 212 KGLNGQKPPGATEPITVKFANNPSQKVN 239
Score = 78 (32.5 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 336 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSKTHK 388
Score = 65 (27.9 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAV 332
>UNIPROTKB|P57052 [details] [associations]
symbol:RBM11 "Splicing regulator RBM11" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AP001660 EMBL:AK091331
EMBL:BC030196 EMBL:AY077695 EMBL:AF519623 IPI:IPI00025663
IPI:IPI00855847 RefSeq:NP_658983.3 UniGene:Hs.283828 PDB:2YWK
PDBsum:2YWK ProteinModelPortal:P57052 SMR:P57052 IntAct:P57052
MINT:MINT-1452231 DMDM:9978670 PRIDE:P57052 DNASU:54033
Ensembl:ENST00000400577 GeneID:54033 KEGG:hsa:54033 UCSC:uc002yjn.4
CTD:54033 GeneCards:GC21P015588 HGNC:HGNC:9897 HPA:HPA045885
neXtProt:NX_P57052 PharmGKB:PA34260 eggNOG:NOG245318
HOGENOM:HOG000146448 HOVERGEN:HBG061506 InParanoid:P57052
OMA:YRFGSSR OrthoDB:EOG4Q58Q1 PhylomeDB:P57052
EvolutionaryTrace:P57052 GenomeRNAi:54033 NextBio:56316
ArrayExpress:P57052 Bgee:P57052 CleanEx:HS_RBM11
Genevestigator:P57052 GermOnline:ENSG00000185272 Uniprot:P57052
Length = 281
Score = 169 (64.5 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 32/77 (41%), Positives = 52/77 (67%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ D T++VG L+ +V E +++ELF+Q+GP+ V + KDR + + +GF+ F E Y
Sbjct: 7 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKP-KSFGFVCFKHPESVSY 65
Query: 92 AIKIMNMIKLYGKPIRV 108
AI ++N I+LYG+PI V
Sbjct: 66 AIALLNGIRLYGRPINV 82
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 133 (51.9 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
Identities = 35/133 (26%), Positives = 64/133 (48%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRV-------TQTHQ-GY 78
G E D + + L +S+ + LF G V + + +D++ T H GY
Sbjct: 48 GDEPSDAKTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGY 107
Query: 79 GFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLL 138
GF+ ++ DA+ AI +N ++L K I+V+ A + AN++I L + +K +
Sbjct: 108 GFVNYVNPSDAERAINTLNGLRLQSKTIKVSYARPSSDGIK-DANLYISGLPKTMTQKNV 166
Query: 139 YDTFSAFGVILQT 151
D F+ +G I+ +
Sbjct: 167 EDMFTQYGRIINS 179
Score = 111 (44.1 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 34/116 (29%), Positives = 60/116 (51%)
Query: 16 LQSLSQTKLEGGGESGDG--DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQ 73
LQS + K+ S DG DA +Y+ GL +++ + ++F Q G ++N + D+ +
Sbjct: 130 LQSKT-IKVSYARPSSDGIKDANLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASG 188
Query: 74 THQGYGFIEFMGEEDADYAIKIMNMIKLYG--KPIRVNKASS--HQKNLDVGANIF 125
+G FI F +A+ AIK +N K G +PI V A++ KN + + ++
Sbjct: 189 LSRGVAFIRFDKRSEAEEAIKDLNGSKPSGASEPITVKFAANPNQSKNSQLLSQLY 244
Score = 81 (33.6 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ ++E + +I +++G L ++ + VS+ K K
Sbjct: 316 KVIRDFNTSKCKGFGFVTMTNYEEAAMAISSLNGYRLGDKVLQVSFKSSKSHK 368
Score = 57 (25.1 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 17/66 (25%), Positives = 34/66 (51%)
Query: 174 QKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYL--CNRP 231
QKN++ + ++ I+ D +G S+G AFI + ++ +I ++G + P
Sbjct: 163 QKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSGASEP 222
Query: 232 ISVSYA 237
I+V +A
Sbjct: 223 ITVKFA 228
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 127 (49.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 32/118 (27%), Positives = 58/118 (49%)
Query: 4 GREIQAGISTPCLQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVN 63
GR I +ST + + G + T+++G L ++ELF + G VV+
Sbjct: 236 GRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVS 295
Query: 64 VHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVG 121
V +P T+ +G+G+++F EDA A+ + + +P+R++ SS + N D G
Sbjct: 296 VRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLD-FSSPRPNNDGG 352
Score = 114 (45.2 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 33/133 (24%), Positives = 65/133 (48%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
E + ATI+VG L + + + + F G V+ + +R T +GYG+++F +
Sbjct: 162 EETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSY 221
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSH--------QKNLDVGAN----IFIGNLDPEVDEK 136
A+ AI+ M ++ G+PI + ++S +K D + +F+GNL D
Sbjct: 222 AEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRD 281
Query: 137 LLYDTFSAFGVIL 149
+++ F+ G ++
Sbjct: 282 AIFELFAKHGEVV 294
Score = 104 (41.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 17/55 (30%), Positives = 36/55 (65%)
Query: 196 PDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK-DSKGDRHGS 249
P+T KGF ++ +++ E + ++DA+ G+Y+ NRP+ + ++ + ++ G R GS
Sbjct: 302 PETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNNDGGRGGS 356
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 114 (45.2 bits), Expect = 0.00057, P = 0.00057
Identities = 29/110 (26%), Positives = 57/110 (51%)
Query: 4 GREIQAGIST--PCLQSLS--QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSG 59
GR I +ST P + + K G +S D T+++G L + ++ +F + G
Sbjct: 236 GRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSD-TLFIGNLSFNANRDNLFNVFGEYG 294
Query: 60 PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109
V++ +P TQ +G+G+++F ++A A++ MN + G+P R++
Sbjct: 295 NVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLD 344
Score = 110 (43.8 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 33/135 (24%), Positives = 65/135 (48%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
S + AT++VG L + + + F G V+ + +R T +GYG+++F + A
Sbjct: 163 STEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAA 222
Query: 90 DYAIKIMNMIKLYGKPIRVN----KASSHQKNLD----VGAN-------IFIGNLDPEVD 134
+ A++ M ++ G+PI ++ K + + N D G + +FIGNL +
Sbjct: 223 EKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNAN 282
Query: 135 EKLLYDTFSAFGVIL 149
L++ F +G ++
Sbjct: 283 RDNLFNVFGEYGNVI 297
Score = 108 (43.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 22/81 (27%), Positives = 45/81 (55%)
Query: 172 SHQKNLDVGANIF--IGN-LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLC 228
S N D N+F GN + + PDT KGF ++ ++S + + A+++AM+G+Y+
Sbjct: 278 SFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIE 337
Query: 229 NRPISVSYAFKKDSKGDRHGS 249
RP + ++ +D+ + + +
Sbjct: 338 GRPCRLDFSTPRDNTNNNNNN 358
Score = 45 (20.9 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 110 KASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
K S + + A +F+G L +D+ L F G ++ IM
Sbjct: 156 KKSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIM 201
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 114 (45.2 bits), Expect = 0.00057, P = 0.00057
Identities = 29/110 (26%), Positives = 57/110 (51%)
Query: 4 GREIQAGIST--PCLQSLS--QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSG 59
GR I +ST P + + K G +S D T+++G L + ++ +F + G
Sbjct: 236 GRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSD-TLFIGNLSFNANRDNLFNVFGEYG 294
Query: 60 PVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN 109
V++ +P TQ +G+G+++F ++A A++ MN + G+P R++
Sbjct: 295 NVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLD 344
Score = 110 (43.8 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 33/135 (24%), Positives = 65/135 (48%)
Query: 30 SGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
S + AT++VG L + + + F G V+ + +R T +GYG+++F + A
Sbjct: 163 STEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAA 222
Query: 90 DYAIKIMNMIKLYGKPIRVN----KASSHQKNLD----VGAN-------IFIGNLDPEVD 134
+ A++ M ++ G+PI ++ K + + N D G + +FIGNL +
Sbjct: 223 EKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNAN 282
Query: 135 EKLLYDTFSAFGVIL 149
L++ F +G ++
Sbjct: 283 RDNLFNVFGEYGNVI 297
Score = 108 (43.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 22/81 (27%), Positives = 45/81 (55%)
Query: 172 SHQKNLDVGANIF--IGN-LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLC 228
S N D N+F GN + + PDT KGF ++ ++S + + A+++AM+G+Y+
Sbjct: 278 SFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIE 337
Query: 229 NRPISVSYAFKKDSKGDRHGS 249
RP + ++ +D+ + + +
Sbjct: 338 GRPCRLDFSTPRDNTNNNNNN 358
Score = 45 (20.9 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 110 KASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
K S + + A +F+G L +D+ L F G ++ IM
Sbjct: 156 KKSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIM 201
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 146 (56.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 34/128 (26%), Positives = 67/128 (52%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G + D + V L +++ + LF G + + + +D++T GYGF+ ++ +
Sbjct: 61 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 120
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS +G
Sbjct: 121 DAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGR 179
Query: 148 ILQTPKIM 155
I+ T +I+
Sbjct: 180 II-TSRIL 186
Score = 107 (42.7 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 153 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 212
Query: 94 KIMNMIKLYG--KPIRVNKASS 113
K +N K G +PI V A++
Sbjct: 213 KGLNGQKPPGATEPITVKFANN 234
Score = 66 (28.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234
+++RD +T KGF F+ +++ + +I +++G L +R + V
Sbjct: 336 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 379
Score = 65 (27.9 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAV 332
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 141 (54.7 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 49/186 (26%), Positives = 87/186 (46%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ +++ LD + +++ F G +++ + D +GY F+ F +E
Sbjct: 135 KSGVGN--VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEA 190
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGNLDPEVDEKLLYDT 141
AD AI+ MN + L + + V + S ++ ++GA N++I N EVD++ L +
Sbjct: 191 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 250
Query: 142 FSAFGVILQTPKIMN----MIKLYG-----KPIRVNKASSHQKNLDV-GANIFIGNLDPE 191
FS FG L K+M K +G K NKA ++ G IF+G +
Sbjct: 251 FSQFGKTLSV-KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKK 309
Query: 192 IMRDPD 197
+ R +
Sbjct: 310 VERQAE 315
Score = 140 (54.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 51/173 (29%), Positives = 77/173 (44%)
Query: 89 ADYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFG 146
A+ A+ MN + GKPIR+ ++ + VG N+FI NLD +D K LYDTFSAFG
Sbjct: 105 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFG 163
Query: 147 VILQTPKIM--NMIKLYG-----KPIRVNKASSHQKNLDVG-ANIFIGNLDPEIMRDPDT 198
IL + N K Y +KA + + +F+G R+ +
Sbjct: 164 NILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 223
Query: 199 G-NSKGFAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHG 248
G +K F + +F E D S+ + Q+ + +SV +D G G
Sbjct: 224 GAKAKEFTNVYIKNFGEEVDDESLKELFSQF--GKTLSVKVM--RDPSGKSKG 272
Score = 106 (42.4 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 29/108 (26%), Positives = 60/108 (55%)
Query: 17 QSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQ 76
+S + + E G ++ + +Y+ ++V + + ELF Q G ++V + +D ++ +
Sbjct: 214 KSRKEREAELGAKAKEF-TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS-K 271
Query: 77 GYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 124
G+GF+ + EDA+ A++ MN ++ GK I V +A QK ++ A +
Sbjct: 272 GFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA---QKKVERQAEL 316
Score = 79 (32.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 14/47 (29%), Positives = 31/47 (65%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 368 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 414
Score = 37 (18.1 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 180 GANIFIGNLDPEI 192
G N++I NLD I
Sbjct: 333 GVNLYIKNLDDTI 345
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 151 (58.2 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 30/91 (32%), Positives = 56/91 (61%)
Query: 32 DGDAT--IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
D +AT ++VGG+D+ + E ++++F G + N+ +P + T+ ++G+ F+E++ +DA
Sbjct: 3 DNNATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDA 62
Query: 90 DYAIKIMNMIKLYGKPIRVN----KASSHQK 116
+A+ MN +L GK I VN K + H K
Sbjct: 63 KHALYNMNNFELNGKRIHVNYSKTKKADHYK 93
Score = 84 (34.6 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNM 157
+F+G +D +DEK LYD FS+FG I +NM
Sbjct: 10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNM 43
Score = 59 (25.8 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRH 247
E+ + T ++GFAF+ Y + + ++ M+ L + I V+Y+ K K D +
Sbjct: 38 EVPLNMTTKKNRGFAFVEYVEVDDAKHALYNMNNFELNGKRIHVNYS--KTKKADHY 92
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 151 (58.2 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 30/91 (32%), Positives = 56/91 (61%)
Query: 32 DGDAT--IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDA 89
D +AT ++VGG+D+ + E ++++F G + N+ +P + T+ ++G+ F+E++ +DA
Sbjct: 3 DNNATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDA 62
Query: 90 DYAIKIMNMIKLYGKPIRVN----KASSHQK 116
+A+ MN +L GK I VN K + H K
Sbjct: 63 KHALYNMNNFELNGKRIHVNYSKTKKADHYK 93
Score = 84 (34.6 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNM 157
+F+G +D +DEK LYD FS+FG I +NM
Sbjct: 10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNM 43
Score = 59 (25.8 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRH 247
E+ + T ++GFAF+ Y + + ++ M+ L + I V+Y+ K K D +
Sbjct: 38 EVPLNMTTKKNRGFAFVEYVEVDDAKHALYNMNNFELNGKRIHVNYS--KTKKADHY 92
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 129 (50.5 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 26 GGGESGDGDAT-IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFM 84
GGG SG G +YVG L V + + LF + G VV + DR + +G+GF+ +
Sbjct: 194 GGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYD 253
Query: 85 GEEDADYAIKIMNMIKLYGKPIRVNKASS 113
++ AIK ++ L G+ IRV++A +
Sbjct: 254 SSQEVQNAIKSLDGADLDGRQIRVSEAEA 282
Score = 112 (44.5 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+S D ++VG L V + +LF +G V V + D++T +G+GF+ +
Sbjct: 85 QSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSE 144
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQKNLD 119
+ A + N +L G+P+RVN K D
Sbjct: 145 VEAAAQQFNGYELDGRPLRVNAGPPPPKRED 175
Score = 81 (33.6 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
++ ++ D D+G SKGF F+ Y S + +I ++ G L R I VS A
Sbjct: 231 VEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
Score = 50 (22.7 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
G +++GNL VD+ L FS G +++
Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKVVE 232
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 137 (53.3 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 46/178 (25%), Positives = 82/178 (46%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+++ LD + +++ F G +++ + D +GY F+ F +E AD AI+ M
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 60
Query: 97 NMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGNLDPEVDEKLLYDTFSAFGVIL 149
N + L + + V + S ++ ++GA N++I N EVD++ L + FS FG L
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 120
Query: 150 QTPKIMN----MIKLYG-----KPIRVNKASSHQKNLDV-GANIFIGNLDPEIMRDPD 197
K+M K +G K NKA ++ G IF+G ++ R +
Sbjct: 121 SV-KVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 177
Score = 104 (41.7 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 29/108 (26%), Positives = 60/108 (55%)
Query: 17 QSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQ 76
+S + + E G ++ + +Y+ ++V + + ELF Q G ++V + +D ++ +
Sbjct: 76 KSRKEREAELGAKAKEF-TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS-K 133
Query: 77 GYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 124
G+GF+ + EDA+ A++ MN ++ GK I V +A QK ++ A +
Sbjct: 134 GFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA---QKKVERQAEL 178
Score = 79 (32.9 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 14/47 (29%), Positives = 31/47 (65%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G SKGF F+ ++S E + ++ M+G+ + ++P+ V+ A +K+ +
Sbjct: 230 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 276
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 180 GANIFIGNLDPEI 192
G N++I NLD I
Sbjct: 195 GVNLYIKNLDDTI 207
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 105 (42.0 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ELF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 25 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 83
Query: 97 NMIKLYGKPIRVNKA 111
N +L GK I V +A
Sbjct: 84 NGKELNGKQIYVGRA 98
Score = 80 (33.2 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 162 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 206
Score = 69 (29.3 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L FS FG I K+M
Sbjct: 125 GVNLYVKNLDDGIDDERLRKEFSPFGTITSA-KVM 158
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 110 (43.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 77 GYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEK 136
GYGF+ ++ +DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K
Sbjct: 121 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQK 179
Query: 137 LLYDTFSAFGVILQTPKIM 155
L FS +G I+ T +I+
Sbjct: 180 ELEQLFSQYGRII-TSRIL 197
Score = 107 (42.7 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 164 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 223
Query: 94 KIMNMIKLYG--KPIRVNKASS 113
K +N K G +PI V A++
Sbjct: 224 KGLNGQKPPGATEPITVKFANN 245
Score = 78 (32.5 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ +++ + +I +++G L +R + VS+ K K
Sbjct: 347 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 399
Score = 65 (27.9 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
IF+ NL P+ DE +L+ F FG +
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAV 343
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 115 (45.5 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 189 DPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK-DSKGDRH 247
+ +I+RD +T KG+ F++Y E ++ +ID M+G +L R I ++A +K D G+R
Sbjct: 160 EAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKPDEDGERG 219
Query: 248 GSAAER 253
G +R
Sbjct: 220 GDRGDR 225
Score = 114 (45.2 bits), Expect = 4.3e-05, Sum P(3) = 4.3e-05
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++VG L ++ T + E FV+ G V + +D T +GYGF+ + EDA+ AI M
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
Query: 97 NMIKLYGKPIRVNKAS 112
N L + IR N A+
Sbjct: 194 NGAWLGRRTIRTNWAT 209
Score = 94 (38.1 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
Identities = 34/135 (25%), Positives = 61/135 (45%)
Query: 30 SGDGDA-TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
SG D T++V LD +++ + LF Q G V+ + + + Y F+EF
Sbjct: 34 SGSEDPRTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDP---YAFVEFSDHNQ 90
Query: 89 ADYAIKIMNMIKLYGKPIRVNKA------SSHQKNLDVGAN--IFIGNLDPEVDEKLLYD 140
A A++ N +L K + V A ++ + + +F+G+L E+D L +
Sbjct: 91 ATLALQSHNGRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLRE 150
Query: 141 TFSAFGVILQTPKIM 155
F FG + + KI+
Sbjct: 151 AFVKFGEVSEA-KII 164
Score = 43 (20.2 bits), Expect = 4.3e-05, Sum P(3) = 4.3e-05
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS-KGDRHGS 249
+G+AF+ + + E++ +I M+ + + + S+ DS K GS
Sbjct: 290 QGYAFVKFETKESAARAIVQMNNADIGGQIVRCSWGKSGDSGKPSERGS 338
Score = 41 (19.5 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 26 GGGESGDG 33
GGGE GDG
Sbjct: 8 GGGEDGDG 15
Score = 37 (18.1 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 183 IFIGNLDPEI 192
+F+ NLDP I
Sbjct: 42 LFVANLDPAI 51
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 125 (49.1 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 35/123 (28%), Positives = 61/123 (49%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+A ++VG L V + LF Q+G V + +R T +G+GF+ E+A+ A+
Sbjct: 112 EAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAV 171
Query: 94 KIMNMIKLYGKPIRVNKAS------SHQKNL-DVGANIFIGNLDPEVDEKLLYDTFSAFG 146
+ N ++ G+ + VN+A+ Q + D I++GNL +VD L FS G
Sbjct: 172 EKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHG 231
Query: 147 VIL 149
++
Sbjct: 232 KVV 234
Score = 115 (45.5 bits), Expect = 0.00024, P = 0.00024
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D IYVG L V + LF + G VV+ + DR T +G+GF++ E + +
Sbjct: 204 DAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNV 263
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQK 116
AI ++ L G+ I+VN A +
Sbjct: 264 AIAALDGQNLEGRAIKVNVAEERTR 288
Score = 82 (33.9 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
+D ++ D +TG S+GF F+ ++ + +I A+ GQ L R I V+ A
Sbjct: 234 VDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 137 (53.3 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 54/189 (28%), Positives = 85/189 (44%)
Query: 89 ADYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFG 146
A+ A+ MN + GKP+R+ ++ + VG NIFI NLD +D K LYDTFSAFG
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFG 59
Query: 147 VILQTPKIM--NMIKLYG-KPIRVNKASSH--QKNLDVGAN---IFIGNLDPEIMRDPDT 198
IL + N K YG +A+ +K + N +F+G R+ +
Sbjct: 60 NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 119
Query: 199 G-NSKGFAFINYASF--EASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA-ERL 254
G +K F + +F + D + + G++ +SV + K G + ER
Sbjct: 120 GARAKEFTNVYIKNFGEDMDDERLKELFGKF--GPALSVKVMTDESGKSKGFGFVSFERH 177
Query: 255 LAAQNPLSQ 263
AQ + +
Sbjct: 178 EDAQKAVDE 186
Score = 127 (49.8 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 36/134 (26%), Positives = 69/134 (51%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+SG G+ I++ LD + +++ F G +++ + D +GYGF+ F +E
Sbjct: 31 KSGVGN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEA 86
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGNLDPEVDEKLLYDT 141
A+ AI+ MN + L + + V + S ++ ++GA N++I N ++D++ L +
Sbjct: 87 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 146
Query: 142 FSAFGVILQTPKIM 155
F FG L K+M
Sbjct: 147 FGKFGPALSV-KVM 159
Score = 105 (42.0 bits), Expect = 4.8e-10, Sum P(3) = 4.8e-10
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + ELF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 187
Query: 97 NMIKLYGKPIRVNKA 111
N +L GK I V +A
Sbjct: 188 NGKELNGKQIYVGRA 202
Score = 87 (35.7 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
L ++M D ++G SKGF F+++ E + ++D M+G+ L + I V A KK
Sbjct: 154 LSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 205
Score = 80 (33.2 bits), Expect = 4.8e-10, Sum P(3) = 4.8e-10
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 266 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 310
Score = 69 (29.3 bits), Expect = 4.8e-10, Sum P(3) = 4.8e-10
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L FS FG I K+M
Sbjct: 229 GVNLYVKNLDDGIDDERLRKEFSPFGTITSA-KVM 262
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 138 (53.6 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 38/122 (31%), Positives = 62/122 (50%)
Query: 29 ESGDGDAT-IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
ES G + ++GGL +E + F + G +V+ + KD T +G+GF+ F +
Sbjct: 155 ESAGGPSRKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAK 214
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
D +K +++ GK I +A S + VG IF+G +DP V E+ + FS FG
Sbjct: 215 SVDALLKDRHVLD--GKLIDPKRAISKEDQEKVG-KIFVGGIDPMVTEEEFDNFFSQFGK 271
Query: 148 IL 149
I+
Sbjct: 272 II 273
Score = 72 (30.4 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASD 216
+D ++M D DTG S+GF F+ Y S A D
Sbjct: 273 IDCQLMIDKDTGRSRGFGFVTYDSPAAVD 301
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 97 (39.2 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 35/137 (25%), Positives = 65/137 (47%)
Query: 76 QGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGN 128
+GYGF+ F +E A+ AI+ MN + L + + V + S ++ ++GA N++I N
Sbjct: 10 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKN 69
Query: 129 LDPEVDEKLLYDTFS-AFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDV-------G 180
++D++ L D F A V + T + K +G + + QK +D G
Sbjct: 70 FGEDMDDERLKDLFGPALSVKVMTDE-SGKSKGFGF-VSFERHEDAQKAVDEMNGKELNG 127
Query: 181 ANIFIGNLDPEIMRDPD 197
I++G ++ R +
Sbjct: 128 KQIYVGRAQKKVERQTE 144
Score = 93 (37.8 bits), Expect = 6.0e-10, Sum P(3) = 6.0e-10
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 65 VYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 120
Query: 97 NMIKLYGKPIRVNKA 111
N +L GK I V +A
Sbjct: 121 NGKELNGKQIYVGRA 135
Score = 80 (33.2 bits), Expect = 6.0e-10, Sum P(3) = 6.0e-10
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 199 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 243
Score = 69 (29.3 bits), Expect = 6.0e-10, Sum P(3) = 6.0e-10
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L FS FG I K+M
Sbjct: 162 GVNLYVKNLDDGIDDERLRKEFSPFGTITSA-KVM 195
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 146 (56.5 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 34/128 (26%), Positives = 67/128 (52%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G + D + V L +++ + LF G + + + +D++T GYGF+ ++ +
Sbjct: 32 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGV 147
DA+ AI +N ++L K I+V+ A ++ AN+++ L + +K L FS +G
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGR 150
Query: 148 ILQTPKIM 155
I+ T +I+
Sbjct: 151 II-TSRIL 157
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 168 (64.2 bits), Expect = 6.7e-10, P = 6.7e-10
Identities = 59/207 (28%), Positives = 94/207 (45%)
Query: 71 VTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRV--NKASSHQKNLDVGANIFIGN 128
+T+ GY ++ F DA+ A+ MN + GKP+R+ ++ + VG NIFI N
Sbjct: 2 ITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKN 60
Query: 129 LDPEVDEKLLYDTFSAFGVILQTPKIM--NMIKLYG-KPIRVNKASSH--QKNLDVGAN- 182
LD +D K LYDTFSAFG IL + N K YG +A+ +K + N
Sbjct: 61 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND 120
Query: 183 --IFIGNLDPEIMRDPDTG-NSKGFAFINYASF--EASDASIDAMHGQYLCNRPISVSYA 237
+F+G R+ + G +K F + +F + D + + G++ +SV
Sbjct: 121 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF--GPALSVKVM 178
Query: 238 FKKDSKGDRHGSAA-ERLLAAQNPLSQ 263
+ K G + ER AQ + +
Sbjct: 179 TDESGKSKGFGFVSFERHEDAQKAVDE 205
Score = 102 (41.0 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ + + + + +LF + GP ++V + D ++ +G+GF+ F EDA A+ M
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEM 206
Query: 97 NMIKLYGKPIRVNKA 111
N +L GK I V +A
Sbjct: 207 NGKELNGKQIYVGRA 221
Score = 80 (33.2 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 199 GNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
G SKGF F+ ++S E + ++ M+G+ + +P+ V+ A +K+ +
Sbjct: 285 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 329
Score = 69 (29.3 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G N+++ NLD +D++ L FS FG I K+M
Sbjct: 248 GVNLYVKNLDDGIDDERLRKEFSPFGTITSA-KVM 281
>ZFIN|ZDB-GENE-030131-6724 [details] [associations]
symbol:zgc:77304 "zgc:77304" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6724 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG009324 KO:K13188 HSSP:O08583
EMBL:BC049507 IPI:IPI00496411 RefSeq:NP_956219.1 UniGene:Dr.75468
ProteinModelPortal:Q7ZWA5 SMR:Q7ZWA5 STRING:Q7ZWA5 GeneID:334784
KEGG:dre:334784 NextBio:20810542 ArrayExpress:Q7ZWA5 Uniprot:Q7ZWA5
Length = 252
Score = 159 (61.0 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 30/89 (33%), Positives = 57/89 (64%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G + + D T++VG LD +V+E +++ELF+Q+GP++ V +PK+ ++ + F+ F E
Sbjct: 2 GIADEADRTLFVGNLDPQVTEEVIFELFLQAGPLIKVKIPKNNEGKSKL-FAFVNFKHEV 60
Query: 88 DADYAIKIMNMIKLYGKPIRVN--KASSH 114
YA+ ++N I+L+G+ + + SSH
Sbjct: 61 SVPYALNLLNGIRLHGRQLNIKFKTGSSH 89
>WB|WBGene00000889 [details] [associations]
symbol:cyn-13 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IGI;IMP] [GO:0006309 "apoptotic DNA
fragmentation" evidence=IGI;IMP] [GO:0004518 "nuclease activity"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006309 GO:GO:0004518 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HSSP:P52011 KO:K09564 OMA:AFIEFEL
EMBL:AL117204 GeneID:178487 KEGG:cel:CELE_Y116A8C.34 CTD:178487
PIR:T31517 RefSeq:NP_001255925.1 ProteinModelPortal:Q9U2S6
SMR:Q9U2S6 IntAct:Q9U2S6 STRING:Q9U2S6 PaxDb:Q9U2S6 PRIDE:Q9U2S6
EnsemblMetazoa:Y116A8C.34a.1 EnsemblMetazoa:Y116A8C.34a.2
EnsemblMetazoa:Y116A8C.34a.3 UCSC:Y116A8C.34.1 WormBase:Y116A8C.34a
InParanoid:Q9U2S6 NextBio:901332 Uniprot:Q9U2S6
Length = 331
Score = 163 (62.4 bits), Expect = 7.8e-10, P = 7.8e-10
Identities = 34/76 (44%), Positives = 48/76 (63%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YVGG + V+E ++ F+ G VV + +P D + H+G+GF+EF EDA AI
Sbjct: 12 TLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDN 71
Query: 96 MNMIKLYGKPIRVNKA 111
MN +L+GK IRVN A
Sbjct: 72 MNESELFGKTIRVNFA 87
>UNIPROTKB|Q9U2S6 [details] [associations]
symbol:cyn-13 "Protein CYN-13, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006309 GO:GO:0004518 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HSSP:P52011 KO:K09564 OMA:AFIEFEL
EMBL:AL117204 GeneID:178487 KEGG:cel:CELE_Y116A8C.34 CTD:178487
PIR:T31517 RefSeq:NP_001255925.1 ProteinModelPortal:Q9U2S6
SMR:Q9U2S6 IntAct:Q9U2S6 STRING:Q9U2S6 PaxDb:Q9U2S6 PRIDE:Q9U2S6
EnsemblMetazoa:Y116A8C.34a.1 EnsemblMetazoa:Y116A8C.34a.2
EnsemblMetazoa:Y116A8C.34a.3 UCSC:Y116A8C.34.1 WormBase:Y116A8C.34a
InParanoid:Q9U2S6 NextBio:901332 Uniprot:Q9U2S6
Length = 331
Score = 163 (62.4 bits), Expect = 7.8e-10, P = 7.8e-10
Identities = 34/76 (44%), Positives = 48/76 (63%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YVGG + V+E ++ F+ G VV + +P D + H+G+GF+EF EDA AI
Sbjct: 12 TLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDN 71
Query: 96 MNMIKLYGKPIRVNKA 111
MN +L+GK IRVN A
Sbjct: 72 MNESELFGKTIRVNFA 87
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 124 (48.7 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 37/155 (23%), Positives = 72/155 (46%)
Query: 12 STPCLQSLSQTKLEGGGESGDGDA----TIYVGGLDDKVSETLMWELFVQSGPVVNVHMP 67
S P Q + GGG G A ++++G L + E + +F +G +
Sbjct: 53 SAPSSGQPQQQQYGGGGSQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVI 112
Query: 68 KDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYG--KPIRVNKAS--SHQKNLDVGAN 123
+++ +GYGFIEF+ A+ ++ N + + R+N A + ++ G
Sbjct: 113 RNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPE 172
Query: 124 --IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMN 156
+F+G+L P+V + +L +TF A ++ K++N
Sbjct: 173 HTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVN 207
Score = 84 (34.6 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
+++ D TG SKG+ F+ +A ++ M+GQY +RP+ A K
Sbjct: 204 KVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANK 253
Score = 43 (20.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
K F+ YA+ ++ ++ ++G L + I +S+ +K
Sbjct: 313 KRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNK 354
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 124 (48.7 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 33/124 (26%), Positives = 60/124 (48%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+A ++VG L V+ + LF Q+G V + +R T +G+GF+ ++A+ A+
Sbjct: 149 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 208
Query: 94 KIMNMIKLYGKPIRVNKASSHQKN-------LDVGANIFIGNLDPEVDEKLLYDTFSAFG 146
+ N L G+ + VNKA+ + +++GNL +VD L FS G
Sbjct: 209 EKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHG 268
Query: 147 VILQ 150
+++
Sbjct: 269 KVVE 272
Score = 80 (33.2 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
++ ++ D +TG S+GF F+ + + + +I A+ GQ L R I V+ A
Sbjct: 271 VEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 120 (47.3 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 25/79 (31%), Positives = 48/79 (60%)
Query: 77 GYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEK 136
GYGF+ ++ EDA+ A+ +N ++L K I+V+ A +++ GAN+++ L + +
Sbjct: 86 GYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIK-GANLYVSGLPKNLSQP 144
Query: 137 LLYDTFSAFGVILQTPKIM 155
L F++FG I+ T +I+
Sbjct: 145 DLEGMFASFGKII-TSRIL 162
Score = 95 (38.5 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
ES G A +YV GL +S+ + +F G ++ + D ++ +G GFI F +
Sbjct: 125 ESIKG-ANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNE 183
Query: 89 ADYAIKIMN--MIKLYGKPIRVNKASS 113
A+ AI+ +N K Y +PI V A++
Sbjct: 184 AERAIQELNGKTPKGYAEPITVKFANN 210
Score = 82 (33.9 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
+++RD T KGF F+ +++ + +I +++G L NR + VS+ K
Sbjct: 303 KVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSLNGYTLGNRVLQVSFKTNK 352
Score = 67 (28.6 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
IF+ NL PE +E +L+ F FG + Q+ K++
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAV-QSVKVI 305
Score = 49 (22.3 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 192 IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCN--RPISVSYA 237
I+ D +G SKG FI + ++ +I ++G+ PI+V +A
Sbjct: 161 ILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYAEPITVKFA 208
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 138 (53.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 34/122 (27%), Positives = 62/122 (50%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YVG + ++ E + + F GP+ ++ M D VT H+G+ F+E+ E A A++ M
Sbjct: 88 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 147
Query: 97 NMIKLYGKPIRVNKASS--------HQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFG 146
N + L G+ I+V + S Q + A I++ ++ P++ + + F AFG
Sbjct: 148 NSVMLGGRNIKVGRPGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDIKSVFEAFG 207
Query: 147 VI 148
I
Sbjct: 208 KI 209
Score = 70 (29.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 192 IMRDPDTGNSKGFAFINYASFEASDASIDAMH-----GQYL 227
+ R+P TG KGF FI Y ++S ++ +M+ GQYL
Sbjct: 214 LAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYL 254
Score = 37 (18.1 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 155 MNMIKLYGKPIRVNKA 170
MN+ L G+ +RV KA
Sbjct: 244 MNLFDLGGQYLRVGKA 259
>UNIPROTKB|E5RG67 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974428
ProteinModelPortal:E5RG67 SMR:E5RG67 Ensembl:ENST00000477044
ArrayExpress:E5RG67 Bgee:E5RG67 Uniprot:E5RG67
Length = 161
Score = 143 (55.4 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 42/122 (34%), Positives = 61/122 (50%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YVG L V+E L+ +LF Q GP N M D T + Y F+EF A A+
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 96 MNMIKLYGKPIRVNKAS--SHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
MN K+ GK ++VN A+ S QK D ++ + +V L D+ GV+ PK
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKK-DTSSSTVVSTQRSQVLVHLHMDSHKLNGVMSGQPK 124
Query: 154 IM 155
++
Sbjct: 125 LL 126
>UNIPROTKB|E5RGV5 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974016
ProteinModelPortal:E5RGV5 SMR:E5RGV5 Ensembl:ENST00000474809
ArrayExpress:E5RGV5 Bgee:E5RGV5 Uniprot:E5RGV5
Length = 144
Score = 143 (55.4 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 43/127 (33%), Positives = 63/127 (49%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YVG L V+E L+ +LF Q GP N M D T + Y F+EF A A+
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 96 MNMIKLYGKPIRVNKA---SSHQKNLDVGA-----------NIFIGNLDPEVDEKLLYDT 141
MN K+ GK ++VN A SS +K+ ++F+G+L PE+ + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 142 FSAFGVI 148
F+ FG I
Sbjct: 126 FAPFGRI 132
>UNIPROTKB|E1BUM0 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 CTD:10450 KO:K09564 OMA:AFIEFEL
EMBL:AADN02043740 EMBL:AADN02043741 EMBL:AADN02043742
EMBL:AADN02043743 IPI:IPI00575389 RefSeq:XP_423739.2
UniGene:Gga.4709 ProteinModelPortal:E1BUM0
Ensembl:ENSGALT00000021831 GeneID:426061 KEGG:gga:426061
NextBio:20827786 ArrayExpress:E1BUM0 Uniprot:E1BUM0
Length = 301
Score = 158 (60.7 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YVGGL ++V E ++ F+ G + ++ +P D T+ H+G+ F+EF EDA AI M
Sbjct: 8 LYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 97 NMIKLYGKPIRVNKA 111
N +L+G+ IRVN A
Sbjct: 68 NESELFGRTIRVNLA 82
>RGD|1311411 [details] [associations]
symbol:Ppie "peptidylprolyl isomerase E (cyclophilin E)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006457 "protein folding" evidence=IEA] [GO:0045070 "positive
regulation of viral genome replication" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS00170
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 RGD:1311411
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HOVERGEN:HBG001065 HSSP:P52011
CTD:10450 KO:K09564 EMBL:AY325152 IPI:IPI00382259
RefSeq:NP_001041333.1 UniGene:Rn.18887 SMR:Q7TP89
Ensembl:ENSRNOT00000043799 GeneID:298508 KEGG:rno:298508
UCSC:RGD:1311411 NextBio:643802 Genevestigator:Q7TP89
Uniprot:Q7TP89
Length = 255
Score = 155 (59.6 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YVGGL ++V + ++ F+ G + ++ +P D T+ H+G+ F+EF EDA AI M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 97 NMIKLYGKPIRVNKA 111
N +L+G+ IRVN A
Sbjct: 68 NESELFGRTIRVNLA 82
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 154 (59.3 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 53/172 (30%), Positives = 79/172 (45%)
Query: 32 DGDA-TIYVGGLDDKVSETLMWELFVQSGPVVNVHM----PKDRVTQTHQG--------- 77
DG T+YVG L V+E L+ +LF Q GP + M P R + G
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSN 64
Query: 78 --YGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPE 132
Y F+EF DA A+ MN K+ GK ++VN A SS +K+ ++F+G+L PE
Sbjct: 65 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Query: 133 VDEKLLYDTFSAFGVILQTPKIMNMI----KLYGKPIRVNKASSHQKNLDVG 180
+ + + F+ FG I + +M K YG NK + + +G
Sbjct: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Score = 100 (40.3 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++VG L +++ + F G + + + KD T +GYGF+ F + DA+ AI M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 97 NMIKLYGKPIRVNKAS 112
L G+ IR N A+
Sbjct: 176 GGQWLGGRQIRTNWAT 191
Score = 86 (35.3 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 189 DPEIMRDPDTGNSKGFAFIN-YASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F++ Y +A +A + M GQ+L R I ++A +K
Sbjct: 142 DARVVKDMATGKSKGYGFVSFYNKLDAENAIVH-MGGQWLGGRQIRTNWATRK 193
Score = 71 (30.1 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 155 MNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEI 192
MN K+ GK ++VN A SS +K+ ++F+G+L PEI
Sbjct: 85 MNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEI 125
Score = 47 (21.6 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + ++L+ TFS FG I++
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIME 250
Score = 42 (19.8 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 6/23 (26%), Positives = 18/23 (78%)
Query: 202 KGFAFINYASFEASDASIDAMHG 224
KG++F+ +++ E++ +I +++G
Sbjct: 257 KGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 154 (59.3 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 53/172 (30%), Positives = 79/172 (45%)
Query: 32 DGDA-TIYVGGLDDKVSETLMWELFVQSGPVVNVHM----PKDRVTQTHQG--------- 77
DG T+YVG L V+E L+ +LF Q GP + M P R + G
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSN 64
Query: 78 --YGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPE 132
Y F+EF DA A+ MN K+ GK ++VN A SS +K+ ++F+G+L PE
Sbjct: 65 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Query: 133 VDEKLLYDTFSAFGVILQTPKIMNMI----KLYGKPIRVNKASSHQKNLDVG 180
+ + + F+ FG I + +M K YG NK + + +G
Sbjct: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Score = 100 (40.3 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++VG L +++ + F G + + + KD T +GYGF+ F + DA+ AI M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 97 NMIKLYGKPIRVNKAS 112
L G+ IR N A+
Sbjct: 176 GGQWLGGRQIRTNWAT 191
Score = 86 (35.3 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 189 DPEIMRDPDTGNSKGFAFIN-YASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F++ Y +A +A + M GQ+L R I ++A +K
Sbjct: 142 DARVVKDMATGKSKGYGFVSFYNKLDAENAIVH-MGGQWLGGRQIRTNWATRK 193
Score = 71 (30.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 155 MNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEI 192
MN K+ GK ++VN A SS +K+ ++F+G+L PEI
Sbjct: 85 MNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEI 125
Score = 47 (21.6 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + ++L+ TFS FG I++
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIME 250
Score = 42 (19.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 6/23 (26%), Positives = 18/23 (78%)
Query: 202 KGFAFINYASFEASDASIDAMHG 224
KG++F+ +++ E++ +I +++G
Sbjct: 257 KGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|H0YBN4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523555
Uniprot:H0YBN4
Length = 175
Score = 140 (54.3 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 6 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 65
Query: 95 IMNMIKLYGKPI 106
MN + GKP+
Sbjct: 66 TMNFDVIKGKPV 77
Score = 128 (50.1 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 36/135 (26%), Positives = 70/135 (51%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMI--KLYGKP-IRVNKASSHQKNLD 178
A++++G+L P+V E +LY+ FS G IL +MI + G + + + ++ LD
Sbjct: 6 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 65
Query: 179 VGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS-YA 237
N + P + D SKG+ F+++ + EA++ +I+ M+G L +R + V +
Sbjct: 66 T-MNFDVIKGKPVVC---DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 121
Query: 238 FKKDSKGDRHGSAAE 252
+K+ + + A E
Sbjct: 122 SRKEREAELGARAKE 136
Score = 108 (43.1 bits), Expect = 0.00030, P = 0.00030
Identities = 28/87 (32%), Positives = 48/87 (55%)
Query: 76 QGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSH-QKNLDVGA------NIFIGN 128
+GYGF+ F +E A+ AI+ MN + L + + V + S ++ ++GA N++I N
Sbjct: 85 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKN 144
Query: 129 LDPEVDEKLLYDTFSAFGVILQTPKIM 155
++D++ L D F FG L K+M
Sbjct: 145 FGEDMDDERLKDLFGKFGPALSV-KVM 170
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 127 (49.8 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 38/125 (30%), Positives = 62/125 (49%)
Query: 28 GESGDGDAT-IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
G D DA +++G + + E + LF Q G + + + KDR T H+G F+ +
Sbjct: 128 GTMKDQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCAR 187
Query: 87 EDADYAIKIMNMIK-LYG--KPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFS 143
E A A ++ K L G +PI+V A S + D +F+G L+ + E+ +Y F
Sbjct: 188 ESAIKAQNALHEQKTLPGMTRPIQVKPADSESRGED--RKLFVGMLNKQQTEEDVYRLFE 245
Query: 144 AFGVI 148
+GVI
Sbjct: 246 PYGVI 250
Score = 80 (33.2 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 192 IMRDPDTGNSKGFAFINYASFEASDASIDAMHG 224
++R PD GNSKG AF+ +++ + ++I A+HG
Sbjct: 255 VLRGPD-GNSKGCAFVKFSTHAEAQSAISALHG 286
Score = 62 (26.9 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242
+ ++ D T SK F F+++ + ++ A+I AM+G + + + V KD+
Sbjct: 539 ISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 593
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 136 (52.9 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 32/126 (25%), Positives = 63/126 (50%)
Query: 31 GDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDAD 90
G+ + + L +++ + LF G + + + +D+VT GYGF+ ++ EEDA
Sbjct: 38 GESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDAL 97
Query: 91 YAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 150
A+ N ++L K I+V+ A + G+N+++ + + L F FG I+
Sbjct: 98 RAVSSFNGLRLQNKTIKVSYARPSNDQIK-GSNLYVSGIPKSMTLHELESIFRPFGQII- 155
Query: 151 TPKIMN 156
T +I++
Sbjct: 156 TSRILS 161
Score = 116 (45.9 bits), Expect = 0.00041, P = 0.00041
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++V L +TL+W+LF Q G +VNV + +D +TQ +GY F+ +A A+ +
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRD-LTQQCKGYAFVSMSNYTEAYNAMLSL 434
Query: 97 NMIKLYGKPIRVNKASS 113
N L GK ++V SS
Sbjct: 435 NGTNLAGKTLQVVFKSS 451
Score = 89 (36.4 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+ +YV G+ ++ + +F G ++ + D VT +G GF+ F +++AD AIK
Sbjct: 128 SNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIK 187
Query: 95 IMN 97
+N
Sbjct: 188 TLN 190
Score = 66 (28.3 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 192 IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYL--CNRPISVSYA 237
I+ D TG SKG F+ + + +D +I ++G C+ I+V +A
Sbjct: 159 ILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSGCSEQITVKFA 206
Score = 64 (27.6 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
G +F+ NL + D+ LL+ FS FG I+ KI+
Sbjct: 373 GYCLFVYNLSSDTDDTLLWQLFSQFGAIVNV-KIL 406
Score = 54 (24.1 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 191 EIMRDPDTGNSKGFAFINYASF-EASDASIDAMHGQYLCNRPISVSY 236
+I+RD T KG+AF++ +++ EA +A + +++G L + + V +
Sbjct: 404 KILRDL-TQQCKGYAFVSMSNYTEAYNAML-SLNGTNLAGKTLQVVF 448
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 154 (59.3 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 53/172 (30%), Positives = 79/172 (45%)
Query: 32 DGDA-TIYVGGLDDKVSETLMWELFVQSGPVVNVHM----PKDRVTQTHQG--------- 77
DG T+YVG L V+E L+ +LF Q GP + M P R + G
Sbjct: 4 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSN 63
Query: 78 --YGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPE 132
Y F+EF DA A+ MN K+ GK ++VN A SS +K+ ++F+G+L PE
Sbjct: 64 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPE 123
Query: 133 VDEKLLYDTFSAFGVILQTPKIMNMI----KLYGKPIRVNKASSHQKNLDVG 180
+ + + F+ FG I + +M K YG NK + + +G
Sbjct: 124 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 175
Score = 100 (40.3 bits), Expect = 0.00037, Sum P(3) = 0.00037
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++VG L +++ + F G + + + KD T +GYGF+ F + DA+ AI M
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 97 NMIKLYGKPIRVNKAS 112
L G+ IR N A+
Sbjct: 175 GGQWLGGRQIRTNWAT 190
Score = 86 (35.3 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 189 DPEIMRDPDTGNSKGFAFIN-YASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F++ Y +A +A + M GQ+L R I ++A +K
Sbjct: 141 DARVVKDMATGKSKGYGFVSFYNKLDAENAIVH-MGGQWLGGRQIRTNWATRK 192
Score = 71 (30.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 155 MNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEI 192
MN K+ GK ++VN A SS +K+ ++F+G+L PEI
Sbjct: 84 MNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEI 124
Score = 47 (21.6 bits), Expect = 0.00037, Sum P(3) = 0.00037
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + ++L+ TFS FG I++
Sbjct: 223 VYCGGIASGLTDQLMRQTFSPFGQIME 249
Score = 42 (19.8 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 6/23 (26%), Positives = 18/23 (78%)
Query: 202 KGFAFINYASFEASDASIDAMHG 224
KG++F+ +++ E++ +I +++G
Sbjct: 256 KGYSFVRFSTHESAAHAIVSVNG 278
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 154 (59.3 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 53/172 (30%), Positives = 79/172 (45%)
Query: 32 DGDA-TIYVGGLDDKVSETLMWELFVQSGPVVNVHM----PKDRVTQTHQG--------- 77
DG T+YVG L V+E L+ +LF Q GP + M P R + G
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSN 64
Query: 78 --YGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPE 132
Y F+EF DA A+ MN K+ GK ++VN A SS +K+ ++F+G+L PE
Sbjct: 65 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Query: 133 VDEKLLYDTFSAFGVILQTPKIMNMI----KLYGKPIRVNKASSHQKNLDVG 180
+ + + F+ FG I + +M K YG NK + + +G
Sbjct: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Score = 100 (40.3 bits), Expect = 0.00037, Sum P(3) = 0.00037
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++VG L +++ + F G + + + KD T +GYGF+ F + DA+ AI M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 97 NMIKLYGKPIRVNKAS 112
L G+ IR N A+
Sbjct: 176 GGQWLGGRQIRTNWAT 191
Score = 86 (35.3 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 189 DPEIMRDPDTGNSKGFAFIN-YASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F++ Y +A +A + M GQ+L R I ++A +K
Sbjct: 142 DARVVKDMATGKSKGYGFVSFYNKLDAENAIVH-MGGQWLGGRQIRTNWATRK 193
Score = 71 (30.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 155 MNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEI 192
MN K+ GK ++VN A SS +K+ ++F+G+L PEI
Sbjct: 85 MNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEI 125
Score = 47 (21.6 bits), Expect = 0.00037, Sum P(3) = 0.00037
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + ++L+ TFS FG I++
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIME 250
Score = 42 (19.8 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 6/23 (26%), Positives = 18/23 (78%)
Query: 202 KGFAFINYASFEASDASIDAMHG 224
KG++F+ +++ E++ +I +++G
Sbjct: 257 KGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 154 (59.3 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 53/172 (30%), Positives = 79/172 (45%)
Query: 32 DGDA-TIYVGGLDDKVSETLMWELFVQSGPVVNVHM----PKDRVTQTHQG--------- 77
DG T+YVG L V+E L+ +LF Q GP + M P R + G
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSN 64
Query: 78 --YGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPE 132
Y F+EF DA A+ MN K+ GK ++VN A SS +K+ ++F+G+L PE
Sbjct: 65 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Query: 133 VDEKLLYDTFSAFGVILQTPKIMNMI----KLYGKPIRVNKASSHQKNLDVG 180
+ + + F+ FG I + +M K YG NK + + +G
Sbjct: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Score = 100 (40.3 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++VG L +++ + F G + + + KD T +GYGF+ F + DA+ AI M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 97 NMIKLYGKPIRVNKAS 112
L G+ IR N A+
Sbjct: 176 GGQWLGGRQIRTNWAT 191
Score = 86 (35.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 189 DPEIMRDPDTGNSKGFAFIN-YASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F++ Y +A +A + M GQ+L R I ++A +K
Sbjct: 142 DARVVKDMATGKSKGYGFVSFYNKLDAENAIVH-MGGQWLGGRQIRTNWATRK 193
Score = 71 (30.1 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 155 MNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEI 192
MN K+ GK ++VN A SS +K+ ++F+G+L PEI
Sbjct: 85 MNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEI 125
Score = 47 (21.6 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + ++L+ TFS FG I++
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIME 250
Score = 42 (19.8 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 6/23 (26%), Positives = 18/23 (78%)
Query: 202 KGFAFINYASFEASDASIDAMHG 224
KG++F+ +++ E++ +I +++G
Sbjct: 257 KGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 154 (59.3 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 53/172 (30%), Positives = 79/172 (45%)
Query: 32 DGDA-TIYVGGLDDKVSETLMWELFVQSGPVVNVHM----PKDRVTQTHQG--------- 77
DG T+YVG L V+E L+ +LF Q GP + M P R + G
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSN 64
Query: 78 --YGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPE 132
Y F+EF DA A+ MN K+ GK ++VN A SS +K+ ++F+G+L PE
Sbjct: 65 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Query: 133 VDEKLLYDTFSAFGVILQTPKIMNMI----KLYGKPIRVNKASSHQKNLDVG 180
+ + + F+ FG I + +M K YG NK + + +G
Sbjct: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Score = 100 (40.3 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++VG L +++ + F G + + + KD T +GYGF+ F + DA+ AI M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 97 NMIKLYGKPIRVNKAS 112
L G+ IR N A+
Sbjct: 176 GGQWLGGRQIRTNWAT 191
Score = 86 (35.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 189 DPEIMRDPDTGNSKGFAFIN-YASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F++ Y +A +A + M GQ+L R I ++A +K
Sbjct: 142 DARVVKDMATGKSKGYGFVSFYNKLDAENAIVH-MGGQWLGGRQIRTNWATRK 193
Score = 71 (30.1 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 155 MNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEI 192
MN K+ GK ++VN A SS +K+ ++F+G+L PEI
Sbjct: 85 MNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEI 125
Score = 47 (21.6 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + ++L+ TFS FG I++
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIME 250
Score = 42 (19.8 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 6/23 (26%), Positives = 18/23 (78%)
Query: 202 KGFAFINYASFEASDASIDAMHG 224
KG++F+ +++ E++ +I +++G
Sbjct: 257 KGYSFVRFSTHESAAHAIVSVNG 279
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 154 (59.3 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 53/172 (30%), Positives = 79/172 (45%)
Query: 32 DGDA-TIYVGGLDDKVSETLMWELFVQSGPVVNVHM----PKDRVTQTHQG--------- 77
DG T+YVG L V+E L+ +LF Q GP + M P R + G
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSN 64
Query: 78 --YGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPE 132
Y F+EF DA A+ MN K+ GK ++VN A SS +K+ ++F+G+L PE
Sbjct: 65 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Query: 133 VDEKLLYDTFSAFGVILQTPKIMNMI----KLYGKPIRVNKASSHQKNLDVG 180
+ + + F+ FG I + +M K YG NK + + +G
Sbjct: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Score = 100 (40.3 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++VG L +++ + F G + + + KD T +GYGF+ F + DA+ AI M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 97 NMIKLYGKPIRVNKAS 112
L G+ IR N A+
Sbjct: 176 GGQWLGGRQIRTNWAT 191
Score = 86 (35.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 189 DPEIMRDPDTGNSKGFAFIN-YASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F++ Y +A +A + M GQ+L R I ++A +K
Sbjct: 142 DARVVKDMATGKSKGYGFVSFYNKLDAENAIVH-MGGQWLGGRQIRTNWATRK 193
Score = 71 (30.1 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 155 MNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEI 192
MN K+ GK ++VN A SS +K+ ++F+G+L PEI
Sbjct: 85 MNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEI 125
Score = 47 (21.6 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + ++L+ TFS FG I++
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIME 250
Score = 42 (19.8 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 6/23 (26%), Positives = 18/23 (78%)
Query: 202 KGFAFINYASFEASDASIDAMHG 224
KG++F+ +++ E++ +I +++G
Sbjct: 257 KGYSFVRFSTHESAAHAIVSVNG 279
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 154 (59.3 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 53/172 (30%), Positives = 79/172 (45%)
Query: 32 DGDA-TIYVGGLDDKVSETLMWELFVQSGPVVNVHM----PKDRVTQTHQG--------- 77
DG T+YVG L V+E L+ +LF Q GP + M P R + G
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSN 64
Query: 78 --YGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPE 132
Y F+EF DA A+ MN K+ GK ++VN A SS +K+ ++F+G+L PE
Sbjct: 65 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Query: 133 VDEKLLYDTFSAFGVILQTPKIMNMI----KLYGKPIRVNKASSHQKNLDVG 180
+ + + F+ FG I + +M K YG NK + + +G
Sbjct: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Score = 100 (40.3 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
++VG L +++ + F G + + + KD T +GYGF+ F + DA+ AI M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 97 NMIKLYGKPIRVNKAS 112
L G+ IR N A+
Sbjct: 176 GGQWLGGRQIRTNWAT 191
Score = 86 (35.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 189 DPEIMRDPDTGNSKGFAFIN-YASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +++D TG SKG+ F++ Y +A +A + M GQ+L R I ++A +K
Sbjct: 142 DARVVKDMATGKSKGYGFVSFYNKLDAENAIVH-MGGQWLGGRQIRTNWATRK 193
Score = 71 (30.1 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 155 MNMIKLYGKPIRVNKA---SSHQKNLDVGANIFIGNLDPEI 192
MN K+ GK ++VN A SS +K+ ++F+G+L PEI
Sbjct: 85 MNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEI 125
Score = 47 (21.6 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQ 150
++ G + + ++L+ TFS FG I++
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIME 250
Score = 42 (19.8 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 6/23 (26%), Positives = 18/23 (78%)
Query: 202 KGFAFINYASFEASDASIDAMHG 224
KG++F+ +++ E++ +I +++G
Sbjct: 257 KGYSFVRFSTHESAAHAIVSVNG 279
>TAIR|locus:2179939 [details] [associations]
symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
Length = 310
Score = 126 (49.4 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 31/68 (45%), Positives = 40/68 (58%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK--GD 245
LD +IM + DTG S+GF FI +A A D SI MHG+ +R ISV+ A K + G+
Sbjct: 34 LDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPKLGRDDGE 93
Query: 246 RHGSAAER 253
HGS R
Sbjct: 94 SHGSRGGR 101
Score = 71 (30.1 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVIL 149
G+ IF+G L PEV ++ L FS FG IL
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDIL 34
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 139 (54.0 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 34/102 (33%), Positives = 55/102 (53%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G +YVG L ++E ++ +F G + N+ + KD T +GYGFI F E A A
Sbjct: 11 GPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRA 70
Query: 93 IKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVD 134
++ +N +L G+P+RV + + LD G +I + D E+D
Sbjct: 71 LEQLNGFELAGRPMRVGHVT---ERLDGGTDITFPDGDQELD 109
Score = 110 (43.8 bits), Expect = 0.00025, P = 0.00025
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 156 NMIKLYGKPIRVNKASSHQK-NLDVGANIF--IGNLDPEI-MRDPDTGNSKGFAFINYAS 211
N+ K G P+R+ S H D+ IF G +D + M+D DTG SKG+ FI ++
Sbjct: 4 NLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSD 63
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKK 240
E + +++ ++G L RP+ V + ++
Sbjct: 64 SECARRALEQLNGFELAGRPMRVGHVTER 92
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 115 (45.5 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 40/131 (30%), Positives = 66/131 (50%)
Query: 21 QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGF 80
Q +GGGE T+ V L SE + ELF ++ ++ MP++ + +GY F
Sbjct: 447 QESQKGGGERES--KTLIVNNLSYAASEETLQELFKKA---TSIKMPQNNQGRP-KGYAF 500
Query: 81 IEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS-SHQK-NLDV--GAN-----IFIGNLDP 131
+EF EDA A+ N ++ G+ IR+ +S S QK N++ G N +F+ L
Sbjct: 501 VEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSE 560
Query: 132 EVDEKLLYDTF 142
+ E+ L ++F
Sbjct: 561 DTTEETLRESF 571
Score = 94 (38.1 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
F G++ I+ D DTG+SKGF F++++S E + A+ +AM + +++ +A K
Sbjct: 571 FEGSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 627
Score = 80 (33.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 63 NVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS------HQK 116
N+ + + R+ + + +G+++F+ ED D A+++ N KL G I++ KA S ++K
Sbjct: 307 NLQVSEVRIGSSKR-FGYVDFLSAEDMDKALQL-NGKKLMGLEIKLEKAKSKESLKENKK 364
Query: 117 NLDVGANIFIGNLDPEVDEKLLYDTF 142
D +F+ NL V E + + F
Sbjct: 365 ERDA-RTLFVKNLPYRVTEDEMKNVF 389
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 115 (45.5 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 40/131 (30%), Positives = 66/131 (50%)
Query: 21 QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGF 80
Q +GGGE T+ V L SE + ELF ++ ++ MP++ + +GY F
Sbjct: 449 QESQKGGGERES--KTLIVNNLSYAASEETLQELFKKA---TSIKMPQNNQGRP-KGYAF 502
Query: 81 IEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS-SHQK-NLDV--GAN-----IFIGNLDP 131
+EF EDA A+ N ++ G+ IR+ +S S QK N++ G N +F+ L
Sbjct: 503 VEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSE 562
Query: 132 EVDEKLLYDTF 142
+ E+ L ++F
Sbjct: 563 DTTEETLRESF 573
Score = 94 (38.1 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
F G++ I+ D DTG+SKGF F++++S E + A+ +AM + +++ +A K
Sbjct: 573 FEGSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 629
Score = 80 (33.2 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 63 NVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS------HQK 116
N+ + + R+ + + +G+++F+ ED D A+++ N KL G I++ KA S ++K
Sbjct: 309 NLQVSEVRIGSSKR-FGYVDFLSAEDMDKALQL-NGKKLMGLEIKLEKAKSKESLKENKK 366
Query: 117 NLDVGANIFIGNLDPEVDEKLLYDTF 142
D +F+ NL V E + + F
Sbjct: 367 ERDA-RTLFVKNLPYRVTEDEMKNVF 391
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 115 (45.5 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 40/131 (30%), Positives = 66/131 (50%)
Query: 21 QTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGF 80
Q +GGGE T+ V L SE + ELF ++ ++ MP++ + +GY F
Sbjct: 449 QESQKGGGERES--KTLIVNNLSYAASEETLQELFKKA---TSIKMPQNNQGRP-KGYAF 502
Query: 81 IEFMGEEDADYAIKIMNMIKLYGKPIRVNKAS-SHQK-NLDV--GAN-----IFIGNLDP 131
+EF EDA A+ N ++ G+ IR+ +S S QK N++ G N +F+ L
Sbjct: 503 VEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSE 562
Query: 132 EVDEKLLYDTF 142
+ E+ L ++F
Sbjct: 563 DTTEETLRESF 573
Score = 94 (38.1 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
F G++ I+ D DTG+SKGF F++++S E + A+ +AM + +++ +A K
Sbjct: 573 FEGSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 629
Score = 80 (33.2 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 63 NVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS------HQK 116
N+ + + R+ + + +G+++F+ ED D A+++ N KL G I++ KA S ++K
Sbjct: 309 NLQVSEVRIGSSKR-FGYVDFLSAEDMDKALQL-NGKKLMGLEIKLEKAKSKESLKENKK 366
Query: 117 NLDVGANIFIGNLDPEVDEKLLYDTF 142
D +F+ NL V E + + F
Sbjct: 367 ERDA-RTLFVKNLPYRVTEDEMKNVF 391
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 116 (45.9 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKG 244
+D +I+ D +TG S+GF F+ +AS EA +I+AM+GQ L R I+V+ A + S G
Sbjct: 33 IDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSRRSDG 89
Score = 108 (43.1 bits), Expect = 0.00015, P = 0.00015
Identities = 27/86 (31%), Positives = 44/86 (51%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D + +VGGL + + F + G V++ + DR T +G+GF+ F +E
Sbjct: 3 DVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQ 62
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKN 117
AI+ MN L G+ I VN+A S + +
Sbjct: 63 AIEAMNGQDLDGRNITVNEAQSRRSD 88
Score = 50 (22.7 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 119 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIM 155
DV F+G L D++ L + FS +G ++ + KI+
Sbjct: 3 DVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDS-KII 38
>TAIR|locus:2178198 [details] [associations]
symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
Length = 527
Score = 135 (52.6 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 32/99 (32%), Positives = 55/99 (55%)
Query: 17 QSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQ 76
++L+Q+ G +G D +YVG L +SE + ++F GPV V +P D T +
Sbjct: 247 KNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCK 306
Query: 77 GYGFIEFMGEEDADYA-IKIMNMIKLYGKPIRVNKASSH 114
G+GFI+F+ E + A I + +++ G+ I+V+ S H
Sbjct: 307 GFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSSVSDH 345
Score = 115 (45.5 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 39/131 (29%), Positives = 64/131 (48%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T++ + K +E ++E F ++G V +V + DR ++ +G G+IEF AI +
Sbjct: 169 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIAL 228
Query: 96 MNMIKLYGKPIRVNKASSHQKNL------DVGAN------IFIGNLDPEVDEKLLYDTFS 143
+ L G+P+ V K S +KNL VG +++GNL + E L F
Sbjct: 229 SGQLFL-GQPVMV-KPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFE 286
Query: 144 AFGVI--LQTP 152
AFG + +Q P
Sbjct: 287 AFGPVELVQLP 297
Score = 82 (33.9 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 195 DPDTGNSKGFAFINYASFEASDASIDAMHGQY-LCNRPISVS 235
DP+TG KGF FI + E S A+ A++G+ + R I VS
Sbjct: 299 DPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVS 340
Score = 68 (29.0 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 200 NSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSY 236
NS GF ++ + S EA+ A+ AMH ++ + IS ++
Sbjct: 479 NSAGFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATF 515
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 119 (46.9 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 34/130 (26%), Positives = 65/130 (50%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRV----------TQTHQ-GYGFI 81
G + V L +++ + LF G V + + +D+V ++ H GYGF+
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFV 77
Query: 82 EFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDT 141
++ +DA+ AI +N ++L K I+V+ A +++ AN++I L + +K + D
Sbjct: 78 NYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIK-DANLYISGLPRTMTQKDVEDM 136
Query: 142 FSAFGVILQT 151
F FG I+ +
Sbjct: 137 FLPFGHIINS 146
Score = 111 (44.1 bits), Expect = 0.00092, P = 0.00092
Identities = 31/102 (30%), Positives = 51/102 (50%)
Query: 16 LQSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTH 75
+ S+S + SG I+V L E ++W++F G V NV + +D T
Sbjct: 239 MSSISSVNVASSATSG---WCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKC 295
Query: 76 QGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVN-KAS-SHQ 115
+G+GF+ E+A AI +N +L K ++V+ K S SH+
Sbjct: 296 KGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSFKTSKSHK 337
Score = 99 (39.9 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 26/89 (29%), Positives = 47/89 (52%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +Y+ GL +++ + ++F+ G ++N + D+ T +G FI F +A+ AI
Sbjct: 116 DANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAI 175
Query: 94 KIMNMIKLYG--KPIRVNKASSHQKNLDV 120
N K G +PI V A++ +N +V
Sbjct: 176 ASFNGHKPPGSSEPITVKFAANPNQNKNV 204
Score = 80 (33.2 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+++RD +T KGF F+ ++E + +I +++G L ++ + VS+ K K
Sbjct: 285 KVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSFKTSKSHK 337
Score = 57 (25.1 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 188 LDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYL--CNRPISVSYA 237
++ ++ D TG S+G AFI + ++ +I + +G + PI+V +A
Sbjct: 144 INSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 195
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 138 (53.6 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ ++VGGL+ E + + F GP+ V + KDR TQ +G+GFI F E A A+
Sbjct: 5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAM 64
Query: 94 KIMNMIKLYGKPIRVNKASSHQKNLDVGA 122
+ MN L G+ IRV+ A + GA
Sbjct: 65 RAMNGESLDGRQIRVDHAGKSARGTRGGA 93
Score = 93 (37.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 192 IMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAA 251
+++D +T S+GF FI + + E + ++ AM+G+ L R I V +A K ++G R G+
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQIRVDHA-GKSARGTRGGAFG 95
Query: 252 ER 253
R
Sbjct: 96 AR 97
Score = 60 (26.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVI 148
+F+G L+ DE+ L D FS+FG I
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPI 32
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 120 (47.3 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 35/126 (27%), Positives = 67/126 (53%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+++G L+ V+E + +++ G V V + ++R T + GY F+EF +A A+ +
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSM 153
Query: 96 MNM-IKLYGKPIRVNKASS---HQKNLDVGA--NIFIGNLDPEVDEKLLYDTFSAFGVIL 149
N I ++N AS +K++ + +IF+G+L P V+E +Y F++
Sbjct: 154 NNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSC 213
Query: 150 QTPKIM 155
++ KIM
Sbjct: 214 KSAKIM 219
Score = 83 (34.3 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 26/86 (30%), Positives = 39/86 (45%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSA 250
+IM DP T S+G+ F+ + +++ M GQ +RPI V A K SK H +
Sbjct: 217 KIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK-SKA--HVFS 273
Query: 251 AERLLAAQNP---LSQADRPHQLFAD 273
++ P A +P FAD
Sbjct: 274 PVNVVPVSMPPVGFYSAAQPVPQFAD 299
Score = 47 (21.6 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 202 KGFAFINYASFEASDASIDAMHGQYLCNRPISVSY 236
KG F+ + + ++++ +I+ + G L N I +S+
Sbjct: 338 KGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSW 372
>UNIPROTKB|A4FV72 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9913 "Bos taurus" [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
InterPro:IPR016304 InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160
PIRSF:PIRSF001475 PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072
PROSITE:PS50102 SMART:SM00360 GO:GO:0006457 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
HOVERGEN:HBG001065 EMBL:BC123818 IPI:IPI00686175
RefSeq:NP_001091630.1 UniGene:Bt.21742 ProteinModelPortal:A4FV72
SMR:A4FV72 PRIDE:A4FV72 GeneID:787681 KEGG:bta:787681 CTD:10450
KO:K09564 NextBio:20928622 Uniprot:A4FV72
Length = 301
Score = 155 (59.6 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YVGGL ++V + ++ F+ G + ++ +P D T+ H+G+ F+EF EDA AI M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 97 NMIKLYGKPIRVNKA 111
N +L+G+ IRVN A
Sbjct: 68 NESELFGRTIRVNLA 82
>UNIPROTKB|G3MZS9 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9913 "Bos taurus" [GO:0006457 "protein folding"
evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 UniGene:Bt.21742 OMA:AFIEFEL
EMBL:DAAA02009142 Ensembl:ENSBTAT00000063035 Uniprot:G3MZS9
Length = 301
Score = 155 (59.6 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YVGGL ++V + ++ F+ G + ++ +P D T+ H+G+ F+EF EDA AI M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 97 NMIKLYGKPIRVNKA 111
N +L+G+ IRVN A
Sbjct: 68 NESELFGRTIRVNLA 82
>UNIPROTKB|E2QVB5 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 CTD:10450 KO:K09564 EMBL:AAEX03009569
EMBL:AAEX03009570 RefSeq:XP_848739.1 Ensembl:ENSCAFT00000004892
GeneID:607232 KEGG:cfa:607232 NextBio:20892973 Uniprot:E2QVB5
Length = 301
Score = 155 (59.6 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YVGGL ++V + ++ F+ G + ++ +P D T+ H+G+ F+EF EDA AI M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 97 NMIKLYGKPIRVNKA 111
N +L+G+ IRVN A
Sbjct: 68 NESELFGRTIRVNLA 82
>UNIPROTKB|Q9UNP9 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0045070 "positive regulation of viral genome
replication" evidence=IMP] [GO:0016018 "cyclosporin A binding"
evidence=TAS] [GO:0000413 "protein peptidyl-prolyl isomerization"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0006355 GO:GO:0000166 EMBL:CH471059
EMBL:AL035404 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 EMBL:AL033527 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0016018 PDB:2KU7 PDBsum:2KU7
HOVERGEN:HBG001065 CTD:10450 KO:K09564 EMBL:AF104012 EMBL:AF104013
EMBL:AF042385 EMBL:AF042386 EMBL:AK313666 EMBL:AL049824
EMBL:BC004898 EMBL:BC008451 EMBL:BC107736 IPI:IPI00009316
IPI:IPI00220188 PIR:S66681 RefSeq:NP_006103.1 RefSeq:NP_982281.1
UniGene:Hs.524690 PDB:1ZMF PDB:2CQB PDB:2KYX PDB:2R99 PDB:3LPY
PDB:3MDF PDB:3UCH PDBsum:1ZMF PDBsum:2CQB PDBsum:2KYX PDBsum:2R99
PDBsum:3LPY PDBsum:3MDF PDBsum:3UCH ProteinModelPortal:Q9UNP9
SMR:Q9UNP9 IntAct:Q9UNP9 STRING:Q9UNP9 PhosphoSite:Q9UNP9
DMDM:13124097 PaxDb:Q9UNP9 PRIDE:Q9UNP9 DNASU:10450
Ensembl:ENST00000324379 Ensembl:ENST00000356511 GeneID:10450
KEGG:hsa:10450 UCSC:uc001cds.2 UCSC:uc001cdv.3
GeneCards:GC01P040157 HGNC:HGNC:9258 HPA:HPA020131 MIM:602435
neXtProt:NX_Q9UNP9 PharmGKB:PA33583 OrthoDB:EOG4STS55
PhylomeDB:Q9UNP9 ChiTaRS:PPIE EvolutionaryTrace:Q9UNP9
GenomeRNAi:10450 NextBio:39609 ArrayExpress:Q9UNP9 Bgee:Q9UNP9
CleanEx:HS_PPIE Genevestigator:Q9UNP9 GermOnline:ENSG00000084072
Uniprot:Q9UNP9
Length = 301
Score = 155 (59.6 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YVGGL ++V + ++ F+ G + ++ +P D T+ H+G+ F+EF EDA AI M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 97 NMIKLYGKPIRVNKA 111
N +L+G+ IRVN A
Sbjct: 68 NESELFGRTIRVNLA 82
>UNIPROTKB|F1SV03 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006457 "protein folding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 KO:K09564 OMA:AFIEFEL EMBL:CR956427
RefSeq:XP_003127865.1 Ensembl:ENSSSCT00000004060 GeneID:100516562
KEGG:ssc:100516562 Uniprot:F1SV03
Length = 301
Score = 155 (59.6 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YVGGL ++V + ++ F+ G + ++ +P D T+ H+G+ F+EF EDA AI M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 97 NMIKLYGKPIRVNKA 111
N +L+G+ IRVN A
Sbjct: 68 NESELFGRTIRVNLA 82
>MGI|MGI:1917118 [details] [associations]
symbol:Ppie "peptidylprolyl isomerase E (cyclophilin E)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0045070 "positive regulation of viral
genome replication" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1917118 GO:GO:0006457 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 GeneTree:ENSGT00690000101651 HOVERGEN:HBG001065
CTD:10450 KO:K09564 OMA:AFIEFEL OrthoDB:EOG4STS55 EMBL:AK008177
EMBL:BC045154 EMBL:AF182825 IPI:IPI00111343 RefSeq:NP_062362.1
UniGene:Mm.126873 ProteinModelPortal:Q9QZH3 SMR:Q9QZH3
STRING:Q9QZH3 PhosphoSite:Q9QZH3 REPRODUCTION-2DPAGE:IPI00111343
PaxDb:Q9QZH3 PRIDE:Q9QZH3 Ensembl:ENSMUST00000030404 GeneID:56031
KEGG:mmu:56031 UCSC:uc008uow.1 InParanoid:Q9QZH3 NextBio:311788
Bgee:Q9QZH3 CleanEx:MM_PPIE Genevestigator:Q9QZH3
GermOnline:ENSMUSG00000028651 Uniprot:Q9QZH3
Length = 301
Score = 155 (59.6 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YVGGL ++V + ++ F+ G + ++ +P D T+ H+G+ F+EF EDA AI M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 97 NMIKLYGKPIRVNKA 111
N +L+G+ IRVN A
Sbjct: 68 NESELFGRTIRVNLA 82
>ZFIN|ZDB-GENE-050417-167 [details] [associations]
symbol:ppie "peptidylprolyl isomerase E
(cyclophilin E)" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016853
"isomerase activity" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050417-167 GO:GO:0006457 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
HOVERGEN:HBG001065 CTD:10450 KO:K09564 OrthoDB:EOG4STS55
EMBL:BC093329 IPI:IPI00511584 RefSeq:NP_001017678.1
UniGene:Dr.79339 ProteinModelPortal:Q561T2 SMR:Q561T2 GeneID:550373
KEGG:dre:550373 InParanoid:Q561T2 NextBio:20879625 Uniprot:Q561T2
Length = 302
Score = 155 (59.6 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YVGGL ++V E ++ F+ G + ++ +P D T+ H+G+ FIEF ED+ AI M
Sbjct: 8 LYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFIEFELAEDSAAAIDNM 67
Query: 97 NMIKLYGKPIRVNKA 111
N +L+G+ IRVN A
Sbjct: 68 NESELFGRTIRVNIA 82
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 117 (46.2 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 77 GYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEK 136
GYGF+ ++ +DA+ A+ ++N ++L K I+V+ A + GAN+++ L + ++
Sbjct: 204 GYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIK-GANLYVSGLPKTMTQQ 262
Query: 137 LLYDTFSAFGVILQTPKIM 155
L F+ FG I+ T +I+
Sbjct: 263 ELEAIFAPFGAII-TSRIL 280
Score = 86 (35.3 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 15/50 (30%), Positives = 31/50 (62%)
Query: 191 EIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
+I++DP T KG+ F++ +++ + +I A++G + NR + VS+ K
Sbjct: 432 KIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSFKTNK 481
Score = 71 (30.1 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTH-QGYGFIEFMGEEDADYAI 93
A +YV GL +++ + +F G ++ + ++ T +G GFI F E+A AI
Sbjct: 248 ANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAI 307
Query: 94 KIMN 97
+N
Sbjct: 308 IALN 311
Score = 47 (21.6 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 197 DTGNSKGFAFINYASFEASDASIDAMHGQY--LCNRPISVSYA 237
DT +KG FI + E + +I A++G C PI V ++
Sbjct: 286 DT-QTKGVGFIRFDKREEATRAIIALNGTTPSSCTDPIVVKFS 327
>UNIPROTKB|Q5TGA3 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 EMBL:AL035404
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL033527 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 HOVERGEN:HBG001065 CTD:10450
KO:K09564 OMA:AFIEFEL EMBL:AL049824 UniGene:Hs.524690 DNASU:10450
GeneID:10450 KEGG:hsa:10450 HGNC:HGNC:9258 ChiTaRS:PPIE
GenomeRNAi:10450 NextBio:39609 IPI:IPI00514173
RefSeq:NP_001181936.1 SMR:Q5TGA3 MINT:MINT-1475497 STRING:Q5TGA3
Ensembl:ENST00000372830 UCSC:uc001cdw.3 Uniprot:Q5TGA3
Length = 314
Score = 155 (59.6 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+YVGGL ++V + ++ F+ G + ++ +P D T+ H+G+ F+EF EDA AI M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 97 NMIKLYGKPIRVNKA 111
N +L+G+ IRVN A
Sbjct: 68 NESELFGRTIRVNLA 82
WARNING: HSPs involving 581 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.135 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 305 281 0.00083 115 3 11 22 0.39 34
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 831
No. of states in DFA: 601 (64 KB)
Total size of DFA: 183 KB (2105 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 22.38u 0.10s 22.48t Elapsed: 00:00:06
Total cpu time: 22.44u 0.10s 22.54t Elapsed: 00:00:07
Start: Thu Aug 15 13:15:51 2013 End: Thu Aug 15 13:15:58 2013
WARNINGS ISSUED: 2