RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3016
(305 letters)
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 84.6 bits (209), Expect = 1e-21
Identities = 25/77 (32%), Positives = 48/77 (62%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
A++YVG L V+E +++E F +GP++++ + +D +T+ GY ++ F DA+ A+
Sbjct: 1 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 60
Query: 95 IMNMIKLYGKPIRVNKA 111
MN + GKP+R+ +
Sbjct: 61 TMNFDVIKGKPVRIMWS 77
Score = 65.3 bits (159), Expect = 2e-14
Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 40/120 (33%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGA 181
A++++G+L P+V E +LY+ FS G IL
Sbjct: 1 ASLYVGDLHPDVTEAMLYEKFSPAGPIL-------------------------------- 28
Query: 182 NIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
+ RD T S G+A++N+ ++ ++D M+ + +P+ + ++ ++D
Sbjct: 29 -------SIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS-QRD 80
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 87.7 bits (216), Expect = 1e-21
Identities = 38/209 (18%), Positives = 71/209 (33%), Gaps = 44/209 (21%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+++GGL + ++ + F Q G + + + +D T+ +G+GF+ + E+ D A+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 96 MN----MIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQT 151
+ K + S IF+G + + +E L D F +G I
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI--- 124
Query: 152 PKIMNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYAS 211
EIM D +G +GFAF+ +
Sbjct: 125 ------------------------------------EVIEIMTDRGSGKKRGFAFVTFDD 148
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKK 240
++ D + + V A K
Sbjct: 149 HDSVDKIV-IQKYHTVNGHNCEVRKALSK 176
Score = 64.6 bits (156), Expect = 3e-13
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
I+VGG+ + E + + F Q G + + + DR + +G+ F+ F + D +
Sbjct: 98 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 157
Query: 95 IMNMIKLYGKPIRVNKASSHQK 116
+ G V KA S Q+
Sbjct: 158 -QKYHTVNGHNCEVRKALSKQE 178
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 83.5 bits (206), Expect = 5e-21
Identities = 70/87 (80%), Positives = 80/87 (91%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
+ DAT+YVGGLD+KVSE L+WELF+Q+GPVVN HMPKDRVT HQGYGF+EF+ EEDADY
Sbjct: 7 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 66
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNL 118
AIKIM+MIKLYGKPIRVNKAS+H KNL
Sbjct: 67 AIKIMDMIKLYGKPIRVNKASAHNKNL 93
Score = 52.7 bits (126), Expect = 7e-10
Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 39/120 (32%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGA 181
A +++G LD +V E LL++ F G
Sbjct: 10 ATVYVGGLDEKVSEPLLWELFLQAG----------------------------------- 34
Query: 182 NIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
++ + +D TG +G+ F+ + S E +D +I M L +PI V+ A +
Sbjct: 35 ----PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHN 90
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 78.8 bits (194), Expect = 3e-19
Identities = 24/82 (29%), Positives = 47/82 (57%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YVG L +E ++ELF +SG + + M D++ +T G+ F+E+ DA+ A++
Sbjct: 9 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 68
Query: 96 MNMIKLYGKPIRVNKASSHQKN 117
+N +L + IR + + ++
Sbjct: 69 INGTRLDDRIIRTDWDAGFKEG 90
Score = 56.1 bits (135), Expect = 5e-11
Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 39/123 (31%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQ 174
+K L +++GNL E+ +Y+ FS G
Sbjct: 1 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSG---------------------------- 32
Query: 175 KNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234
+ D + GF F+ Y S ++ ++ ++G L +R I
Sbjct: 33 -----------DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 81
Query: 235 SYA 237
+
Sbjct: 82 DWD 84
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 78.1 bits (192), Expect = 5e-19
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDR-VTQTHQGYGFIEFMGEEDADYAI 93
+ I V + + ++ + ELF G + V +PK T H+G+GF++F+ ++DA A
Sbjct: 9 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 68
Query: 94 KIM-NMIKLYGKPIRVNKASS 113
+ + LYG+ + + A S
Sbjct: 69 NALCHSTHLYGRRLVLEWADS 89
Score = 60.3 bits (146), Expect = 2e-12
Identities = 16/124 (12%), Positives = 44/124 (35%), Gaps = 41/124 (33%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGA 181
+ I + N+ + +++ + + FS FG +
Sbjct: 9 SKILVRNIPFQANQREIRELFSTFGELKTVR----------------------------- 39
Query: 182 NIFIGNLDPEIMRDPD-TGNSKGFAFINYASFEASDASIDAM-HGQYLCNRPISVSYAFK 239
+ + TG +GF F+++ + + + + +A+ H +L R + + +A
Sbjct: 40 ----------LPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 89
Query: 240 KDSK 243
+ +
Sbjct: 90 EVTV 93
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 76.5 bits (188), Expect = 2e-18
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
+ + V GL K +E + E F G V+ V + KD T +G+GF+ F E +
Sbjct: 9 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 68
Query: 95 IMNMIKLYGKPIRVNKASSHQ 115
+MI G+ +S Q
Sbjct: 69 QRHMID--GRWCDCKLPNSKQ 87
Score = 55.7 bits (134), Expect = 6e-11
Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 41/129 (31%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQ 174
++ + +++ + L + E+ L + FS F
Sbjct: 2 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTF----------------------------- 32
Query: 175 KNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234
L ++ +D TG+SKGF F+ + +E + H + R
Sbjct: 33 ----------GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHM--IDGRWCDC 80
Query: 235 SYAFKKDSK 243
K S+
Sbjct: 81 KLPNSKQSQ 89
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 76.1 bits (187), Expect = 2e-18
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
GES D +YV L +++ + +F + G +V ++ +D++T +G F+ + E
Sbjct: 1 GESIK-DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKRE 59
Query: 88 DADYAIKIMN--MIKLYGKPIRVNKA 111
+A AI +N + + +P+ V A
Sbjct: 60 EAQEAISALNNVIPEGGSQPLSVRLA 85
Score = 59.2 bits (143), Expect = 3e-12
Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 41/119 (34%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVG 180
N+++ NL + + L F +G I+Q + +
Sbjct: 6 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDK----------------------- 42
Query: 181 ANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYL--CNRPISVSYA 237
TG +G AF+ Y E + +I A++ ++P+SV A
Sbjct: 43 ----------------LTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 85
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 74.7 bits (183), Expect = 7e-18
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+++GGL + +++ + EL GP+ ++ KD T +GY F E++ D AI +
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 97 NMIKLYGKPIRVNKASSHQKN 117
N ++L K + V +AS KN
Sbjct: 64 NGMQLGDKKLLVQRASVGAKN 84
Score = 50.0 bits (119), Expect = 7e-09
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 20/79 (25%)
Query: 183 IFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASIDAM 222
+FIG L + ++D TG SKG+AF Y +D +I +
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 223 HGQYLCNRPISVSYAFKKD 241
+G L ++ + V A
Sbjct: 64 NGMQLGDKKLLVQRASVGA 82
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 74.2 bits (182), Expect = 9e-18
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+++GGL + ++ + E F Q G V + +D +T+ +G+GF+ FM + D +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-Q 61
Query: 97 NMIKLYGKPIRVNKA 111
+ +L K I A
Sbjct: 62 SRHELDSKTIDPKVA 76
Score = 55.8 bits (134), Expect = 5e-11
Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 40/115 (34%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+FIG L + ++ L + F FG
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFG------------------------------------- 25
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAF 238
+ +MRDP T S+GF F+ + D + A L ++ I AF
Sbjct: 26 --EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-AQSRHELDSKTIDPKVAF 77
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 73.5 bits (180), Expect = 5e-17
Identities = 18/118 (15%), Positives = 47/118 (39%), Gaps = 12/118 (10%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+Y+ L K++ M+++F + GP+ + + +G ++ + DA A
Sbjct: 9 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNACDH 65
Query: 96 MNMIKLYGKPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPK 153
++ + + + V ++++ +D + E+ L +G+ PK
Sbjct: 66 LSGFNVCNRYLVVLYYNANRAF---------QKMDTKKKEEQLKLLKEKYGINTDPPK 114
Score = 58.1 bits (140), Expect = 2e-11
Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 42/130 (32%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
++I NL ++ + +YD F +G I Q
Sbjct: 10 LYIRNLPYKITAEEMYDIFGKYGPIRQ--------------------------------- 36
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+R +T ++G A++ Y + + D + G +CNR + V Y +
Sbjct: 37 ---------IRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAF 87
Query: 244 GDRHGSAAER 253
E
Sbjct: 88 QKMDTKKKEE 97
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 72.4 bits (177), Expect = 5e-17
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
DA +YV GL +++ + +LF Q G ++ + D+VT +G GFI F +A+ AI
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 65
Query: 94 KIMNMIKLYG--KPIRVNKA 111
K +N K G +PI V A
Sbjct: 66 KGLNGQKPSGATEPITVKFA 85
Score = 57.4 bits (138), Expect = 2e-11
Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 41/119 (34%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVG 180
AN+++ L + +K L FS +G
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYG---------------------------------- 31
Query: 181 ANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYL--CNRPISVSYA 237
+ I+ D TG S+G FI + ++ +I ++GQ PI+V +A
Sbjct: 32 -----RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 85
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 71.9 bits (176), Expect = 6e-17
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+++GGL ++ + + F + G VV+ + D +T +G+GF+ F E D +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD-Q 60
Query: 97 NMIKLYGKPIRVNKA 111
KL GK I +A
Sbjct: 61 KEHKLNGKVIDPKRA 75
Score = 48.4 bits (115), Expect = 2e-08
Identities = 25/114 (21%), Positives = 36/114 (31%), Gaps = 40/114 (35%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+FIG L + +K L D FS
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSK--------------------------------------- 22
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
F +D + DP TG S+GF F+ + E+ D +D L + I A
Sbjct: 23 FGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD-QKEHKLNGKVIDPKRA 75
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 72.0 bits (176), Expect = 7e-17
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+YVGGL ++V + ++ F+ G + ++ +P D T+ H+G+ F+EF EDA AI
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 96 MNMIKLYGKPIRVNKA 111
MN +L+G+ IRVN A
Sbjct: 67 MNESELFGRTIRVNLA 82
Score = 50.8 bits (121), Expect = 4e-09
Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 39/120 (32%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+++G L EVD+K+L+ F FG I
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDIT---------------------------------- 33
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
D +I D +T +GFAF+ + E + A+ID M+ L R I V+ A K
Sbjct: 34 -----DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIK 88
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 72.2 bits (177), Expect = 9e-17
Identities = 20/96 (20%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 28 GESGDGD-----ATIYVGGLD-DKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFI 81
G SG D + +++G L+ V ++ + +F + G +V + H+G+ F+
Sbjct: 4 GSSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV--------HKGFAFV 55
Query: 82 EFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKN 117
+++ E +A A+ + + G+ + +N A+ + N
Sbjct: 56 QYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVN 91
Score = 56.0 bits (135), Expect = 6e-11
Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 48/132 (36%)
Query: 119 DVGANIFIGNLDPE-VDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNL 177
+ + +FIGNL+ V + + FS +G I+
Sbjct: 13 SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK---------------------- 50
Query: 178 DVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
GFAF+ Y + + A++ G+ + + + ++ A
Sbjct: 51 -------------------------GFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLA 85
Query: 238 FKKDSKGDRHGS 249
+ S
Sbjct: 86 AEPKVNRSGPSS 97
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 71.1 bits (174), Expect = 1e-16
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+ V LD VS+ + ELF + G + + DR + G + F + DA A+K
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQY 61
Query: 97 NMIKLYGKPIRVNKASS 113
N + L G+P+ + +S
Sbjct: 62 NGVPLDGRPMNIQLVTS 78
Score = 49.5 bits (118), Expect = 8e-09
Identities = 15/114 (13%), Positives = 35/114 (30%), Gaps = 40/114 (35%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+ + NLD V + + + F+ FG + + +
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-------------------------- 36
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
+G S G A +++ + ++ +G L RP+++
Sbjct: 37 --------------SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 76
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 71.3 bits (174), Expect = 1e-16
Identities = 75/121 (61%), Positives = 83/121 (68%), Gaps = 38/121 (31%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
IFIGNLDPE+DEKLLYDTFSAFGVILQTPKIM
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIM---------------------------- 32
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
RDPDTGNSKG+AFIN+ASF+ASDA+I+AM+GQYLCNRPI+VSYAFKKDSK
Sbjct: 33 ----------RDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 82
Query: 244 G 244
G
Sbjct: 83 G 83
Score = 67.1 bits (163), Expect = 4e-15
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVH-MPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
I++G LD ++ E L+++ F G ++ + +D T +GY FI F + +D AI+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 96 MNMIKLYGKPIRVNKA 111
MN L +PI V+ A
Sbjct: 61 MNGQYLCNRPITVSYA 76
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 70.5 bits (172), Expect = 2e-16
Identities = 24/83 (28%), Positives = 45/83 (54%)
Query: 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMG 85
G + D + + V GL +E + E+F + GP+ +V + D+ ++ +G+ F+ F
Sbjct: 1 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 60
Query: 86 EEDADYAIKIMNMIKLYGKPIRV 108
+DA A + N ++L G+ IRV
Sbjct: 61 VDDAKEAKERANGMELDGRRIRV 83
Score = 46.6 bits (110), Expect = 1e-07
Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 39/120 (32%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQ 174
+ N D + + L E+ L + FS +G
Sbjct: 3 RANPDPNCCLGVFGLSLYTTERDLREVFSKYG---------------------------- 34
Query: 175 KNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234
D I+ D + S+GFAF+ + + + + + + +G L R I V
Sbjct: 35 -----------PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 83
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 70.5 bits (172), Expect = 4e-16
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G +G+ D IYVG L + + ++F + G + ++ + + + F+EF
Sbjct: 8 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPR 64
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKN 117
DA+ A+ + G +RV S +
Sbjct: 65 DAEDAVYGRDGYDYDGYRLRVEFPRSGRGT 94
Score = 46.2 bits (109), Expect = 2e-07
Identities = 16/121 (13%), Positives = 32/121 (26%), Gaps = 42/121 (34%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
I++GNL P++ K + D F +G I
Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAI----------------------------------- 41
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ + FAF+ + ++ ++ G + V +
Sbjct: 42 -------RDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGT 94
Query: 244 G 244
G
Sbjct: 95 G 95
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 70.5 bits (172), Expect = 4e-16
Identities = 23/90 (25%), Positives = 42/90 (46%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
G G ++V L SE + +LF GP+ +H P D +T+ +G+ F+ FM
Sbjct: 1 GSSGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFP 60
Query: 87 EDADYAIKIMNMIKLYGKPIRVNKASSHQK 116
E A A ++ G+ + V ++ ++
Sbjct: 61 EHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 90
Score = 44.7 bits (105), Expect = 7e-07
Identities = 22/128 (17%), Positives = 38/128 (29%), Gaps = 39/128 (30%)
Query: 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGAN 182
+F+ NL E+ L FSA+G + + ++
Sbjct: 10 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPID-------------------------- 43
Query: 183 IFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242
T KGFAF+ + E + + + GQ R + V + K
Sbjct: 44 -------------SLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 90
Query: 243 KGDRHGSA 250
S+
Sbjct: 91 ASQSGPSS 98
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 69.6 bits (170), Expect = 5e-16
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
I+VGGL E + E F G V ++ +P D T +G+ FI F EE ++
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-K 60
Query: 97 NMIKLYGKPIRVNKA 111
+ + A
Sbjct: 61 KYHNVGLSKCEIKVA 75
Score = 47.3 bits (112), Expect = 4e-08
Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 40/114 (35%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
IF+G L P+ E+ + + F FG +
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVES--------------------------------- 28
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
E+ D T +GF FI + E ++ + + + A
Sbjct: 29 ------IELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY-HNVGLSKCEIKVA 75
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 69.7 bits (170), Expect = 5e-16
Identities = 26/80 (32%), Positives = 39/80 (48%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D +ATI V L + ET + ELF G + +++ KD+ T +G+ FI F EDA
Sbjct: 6 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAAR 65
Query: 92 AIKIMNMIKLYGKPIRVNKA 111
AI ++ + V A
Sbjct: 66 AIAGVSGFGYDHLILNVEWA 85
Score = 48.1 bits (114), Expect = 3e-08
Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 39/123 (31%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQ 174
+ D A I + NL + E L + F F
Sbjct: 2 NRRADDNATIRVTNLSEDTRETDLQELFRPF----------------------------- 32
Query: 175 KNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISV 234
+ +D TG SKGFAFI++ E + +I + G + ++V
Sbjct: 33 ----------GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 82
Query: 235 SYA 237
+A
Sbjct: 83 EWA 85
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 69.3 bits (169), Expect = 6e-16
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+++GGL + ++ + F Q G + + + +D T+ +G+GF+ + E+ D A+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN- 66
Query: 96 MNMIKLYGKPIRVNKASS 113
K+ G+ + +A S
Sbjct: 67 ARPHKVDGRVVEPKRAVS 84
Score = 48.9 bits (116), Expect = 2e-08
Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 40/114 (35%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+FIG L E ++ L F
Sbjct: 9 LFIGGLSFETTDESLRSHFEQ--------------------------------------- 29
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
+ D +MRDP+T S+GF F+ YA+ E DA+++ + R + A
Sbjct: 30 WGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 82
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 69.0 bits (168), Expect = 7e-16
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
I+VGGL + + F Q G V + + D+ T H+G+GF+ F E+ + + +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-I 60
Query: 97 NMIKLYGKPIRVNKA 111
+ ++ K + KA
Sbjct: 61 HFHEINNKMVECKKA 75
Score = 43.2 bits (101), Expect = 2e-06
Identities = 17/114 (14%), Positives = 31/114 (27%), Gaps = 40/114 (35%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
IF+G L + + F FG +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDD--------------------------------- 28
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
+M D T +GF F+ + S + + +H + N+ + A
Sbjct: 29 ------AMLMFDKTTNRHRGFGFVTFESEDIVEKVC-EIHFHEINNKMVECKKA 75
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 69.3 bits (169), Expect = 8e-16
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ + V L +++ ++ LF GP+ + +D T GY F++F E D+ AI
Sbjct: 2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAI 61
Query: 94 KIMNMIKLYGKPIRVNKA 111
K++N I + K ++V+ A
Sbjct: 62 KVLNGITVRNKRLKVSYA 79
Score = 53.5 bits (128), Expect = 4e-10
Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 39/115 (33%)
Query: 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGAN 182
N+ + L ++ ++ LY F A G I + +
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDY------------------------- 38
Query: 183 IFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
TG S G+AF+++ S S +I ++G + N+ + VSYA
Sbjct: 39 --------------KTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 79
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 69.7 bits (170), Expect = 9e-16
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T++ L ++ + + F G V +V + DR ++ +G ++EF + AI
Sbjct: 20 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG- 78
Query: 96 MNMIKLYGKPIRVNKASSHQKN 117
+ +L G PI V + + +KN
Sbjct: 79 LTGQRLLGVPIIVQASQA-EKN 99
Score = 50.0 bits (119), Expect = 9e-09
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 41/139 (29%)
Query: 105 PIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKP 164
P+R + + D +F L + + L D FSA G +
Sbjct: 3 PVREPVDNLSPEERD-ARTVFCMQLAARIRPRDLEDFFSAVGKVR--------------- 46
Query: 165 IRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHG 224
D I+ D ++ SKG A++ + ++ +I + G
Sbjct: 47 ------------------------DVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTG 81
Query: 225 QYLCNRPISVSYAFKKDSK 243
Q L PI V + + ++
Sbjct: 82 QRLLGVPIIVQASQAEKNR 100
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 69.3 bits (169), Expect = 1e-15
Identities = 18/101 (17%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 17 QSLSQTKLEGGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQ 76
++L LE + +++GGL + +E + + Q G + + + +D ++ +
Sbjct: 3 KTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSR 62
Query: 77 GYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKN 117
G+GF+ F + D A+ + G+ + +A + +++
Sbjct: 63 GFGFVTFSSMAEVDAAMA-ARPHSIDGRVVEPKRAVAREES 102
Score = 57.4 bits (138), Expect = 2e-11
Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 40/141 (28%)
Query: 104 KPIRVNKASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGK 163
K + ++ + +FIG L E E+ L + + +G +
Sbjct: 3 KTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTD------------- 49
Query: 164 PIRVNKASSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMH 223
+MRDP + S+GF F+ ++S DA++ A
Sbjct: 50 --------------------------CVVMRDPASKRSRGFGFVTFSSMAEVDAAM-AAR 82
Query: 224 GQYLCNRPISVSYAFKKDSKG 244
+ R + A ++ G
Sbjct: 83 PHSIDGRVVEPKRAVAREESG 103
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 68.5 bits (167), Expect = 1e-15
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YVG L V+E L+ +LF Q GP + M + ++ Y F+EF DA A+
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAA 67
Query: 96 MNMIKLYGKPIRVNKASS 113
MN K+ GK ++VN A++
Sbjct: 68 MNGRKILGKEVKVNWATT 85
Score = 48.9 bits (116), Expect = 2e-08
Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 41/120 (34%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+++GNL +V E L+ FS G
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCK---------------------------------- 36
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ ++ + F+ + + A++ AM+G+ + + + V++A S+
Sbjct: 37 -------SCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ 89
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 68.5 bits (167), Expect = 2e-15
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 27 GGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE 86
G ++ + ++VG L ++E M +LF + G V + +G+GFI
Sbjct: 1 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI------HKDKGFGFIRLETR 54
Query: 87 EDADYAIKIMNMIKLYGKPIRVNKASS 113
A+ A ++ + L GK +RV A
Sbjct: 55 TLAEIAKVELDNMPLRGKQLRVRFACH 81
Score = 45.3 bits (107), Expect = 3e-07
Identities = 15/120 (12%), Positives = 32/120 (26%), Gaps = 45/120 (37%)
Query: 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGAN 182
+F+GNL P++ E+ + F +G + +
Sbjct: 10 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------------------------ 45
Query: 183 IFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDS 242
F FI + ++ + + L + + V +A S
Sbjct: 46 ---------------------FGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 84
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 67.8 bits (165), Expect = 2e-15
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+ V L +++ LF G + + + +D++T GYGF+ ++ +DA+ AI
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 96 MNMIKLYGKPIRVNKA 111
+N ++L K I+V+ A
Sbjct: 64 LNGLRLQTKTIKVSYA 79
Score = 49.7 bits (118), Expect = 7e-09
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 39/115 (33%)
Query: 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGAN 182
N+ + L + ++ F + G I + +
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK------------------------- 38
Query: 183 IFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
TG S G+ F+NY + ++ +I+ ++G L + I VSYA
Sbjct: 39 --------------ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 79
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 67.8 bits (165), Expect = 3e-15
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G I++ LD + +++ F G +++ + +GYGF+ F +E A+ A
Sbjct: 7 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV--CDENGSKGYGFVHFETQEAAERA 64
Query: 93 IKIMNMIKLYGKPIRVNKASS 113
I+ MN + L + + V + S
Sbjct: 65 IEKMNGMLLNDRKVFVGRFKS 85
Score = 49.6 bits (118), Expect = 9e-09
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 41/122 (33%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGA 181
NIFI NLD +D K LYDTFSAFG IL + +
Sbjct: 9 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG---------------------- 46
Query: 182 NIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
SKG+ F+++ + EA++ +I+ M+G L +R + V +
Sbjct: 47 -------------------SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 87
Query: 242 SK 243
+
Sbjct: 88 ER 89
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 67.5 bits (164), Expect = 3e-15
Identities = 12/78 (15%), Positives = 32/78 (41%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ T+++ ++ + +L V T + + +I+ +EDA Y +
Sbjct: 1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCV 60
Query: 94 KIMNMIKLYGKPIRVNKA 111
+ +N +K+ G + +
Sbjct: 61 EKLNGLKIEGYTLVTKVS 78
Score = 42.1 bits (98), Expect = 3e-06
Identities = 11/114 (9%), Positives = 34/114 (29%), Gaps = 39/114 (34%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+++ N P ++ + D V+ + ++ ++
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF------------------------ 39
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
S+ FA+I+ S E + ++ ++G + + +
Sbjct: 40 ---------------NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 78
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 67.8 bits (165), Expect = 4e-15
Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 19 LSQTKLEGGGESGDG--DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQ 76
L+Q + G +G A +++ L + + + ++F+ G VV+ + D+ T +
Sbjct: 1 LTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK 60
Query: 77 GYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASSHQKN 117
+GF+ + A AI+ MN ++ K ++V S +
Sbjct: 61 CFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 101
Score = 53.2 bits (127), Expect = 7e-10
Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 40/134 (29%)
Query: 111 ASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKA 170
A+ QK GAN+FI +L E ++ L F
Sbjct: 8 AAGSQKEGPEGANLFIYHLPQEFGDQDLLQMF---------------------------- 39
Query: 171 SSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNR 230
F + ++ D T SK F F++Y + ++ A+I +M+G + +
Sbjct: 40 -----------MPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK 88
Query: 231 PISVSYAF-KKDSK 243
+ V K DSK
Sbjct: 89 RLKVQLKRSKNDSK 102
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 67.0 bits (163), Expect = 4e-15
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVN---VHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+++ L+ +E + +F + G + + G+GF+E+ E A A+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 94 KIMNMIKLYGKPIRVNKASSHQK 116
K + + G + V + K
Sbjct: 61 KQLQGHTVDGHKLEVRISERATK 83
Score = 53.9 bits (129), Expect = 3e-10
Identities = 18/118 (15%), Positives = 30/118 (25%), Gaps = 36/118 (30%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+FI NL+ E+ L FS G I
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKK-------------------------- 34
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
S GF F+ Y E + ++ + G + + V + +
Sbjct: 35 ----------NKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERAT 82
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 66.9 bits (163), Expect = 6e-15
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+S + T+Y GG+ +++ LM + F G ++ + + +GY F+ F E
Sbjct: 13 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP------EKGYSFVRFSTHES 66
Query: 89 ADYAIKIMNMIKLYGKPIRVNKA 111
A +AI +N + G ++
Sbjct: 67 AAHAIVSVNGTTIEGHVVKCYWG 89
Score = 47.3 bits (112), Expect = 8e-08
Identities = 11/117 (9%), Positives = 37/117 (31%), Gaps = 45/117 (38%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVG 180
++ G + + ++L+ TFS FG
Sbjct: 18 NCTVYCGGIASGLTDQLMRQTFSPFG---------------------------------- 43
Query: 181 ANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
++ + + ++F+ +++ E++ +I +++G + + +
Sbjct: 44 -----QIMEIRVFPEKG------YSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 89
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 66.3 bits (161), Expect = 1e-14
Identities = 19/76 (25%), Positives = 39/76 (51%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++V + ++ E + E F G + N+H+ DR T +GY +E+ + A A +
Sbjct: 9 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 68
Query: 96 MNMIKLYGKPIRVNKA 111
+N ++ G+ I+V+
Sbjct: 69 LNGAEIMGQTIQVDWC 84
Score = 48.2 bits (114), Expect = 3e-08
Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 39/120 (32%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVG 180
G +F+ ++ E E + + F +G
Sbjct: 7 GWILFVTSIHEEAQEDEIQEKFCDYG---------------------------------- 32
Query: 181 ANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
+ + D TG SKG+A + Y + + + A+ +A++G + + I V + F K
Sbjct: 33 -----EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 87
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 65.5 bits (159), Expect = 2e-14
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+ ++VGGL +E + ++F + G + V + KDR TQ +G+GF+ F +DA A+
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 94 KIMNMIKLYGKPIRVNKASSHQKN 117
MN + G+ IRV++A N
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKSSDN 88
Score = 47.4 bits (112), Expect = 6e-08
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 20/81 (24%)
Query: 183 IFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASIDAM 222
+F+G L + ++D +T S+GF F+ + + + + ++ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 223 HGQYLCNRPISVSYAFKKDSK 243
+G+ + R I V A K
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN 88
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 64.7 bits (157), Expect = 3e-14
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
I+VGG+ + E + + F Q G + + + DR + +G+ F+ F + D +
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI- 62
Query: 96 MNMIKLYGKPIRVNKA 111
+ G V KA
Sbjct: 63 QKYHTVNGHNCEVRKA 78
Score = 42.8 bits (100), Expect = 2e-06
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 21/75 (28%)
Query: 183 IFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASIDAM 222
IF+G + + M D +G +GFAF+ + ++ D I
Sbjct: 5 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK-IVIQ 63
Query: 223 HGQYLCNRPISVSYA 237
+ V A
Sbjct: 64 KYHTVNGHNCEVRKA 78
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 65.1 bits (158), Expect = 3e-14
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMG 85
G ES ++V + + + + ++F Q G +++V + + + +G+GF+ F
Sbjct: 3 GNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFEN 60
Query: 86 EEDADYAIKIMNMIKLYGKPIRVNKASS 113
DAD A + ++ + G+ I VN A++
Sbjct: 61 SADADRAREKLHGTVVEGRKIEVNNATA 88
Score = 49.7 bits (118), Expect = 1e-08
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 41/130 (31%)
Query: 111 ASSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKA 170
+S + ++ + + N+ + L F FG I
Sbjct: 1 SSGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKI---------------------- 38
Query: 171 SSHQKNLDVGANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNR 230
++ + SKGF F+ + + +D + + +HG + R
Sbjct: 39 -------------------LDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGR 79
Query: 231 PISVSYAFKK 240
I V+ A +
Sbjct: 80 KIEVNNATAR 89
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 64.7 bits (157), Expect = 5e-14
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+ L ++E + E+F + + +G +IEF E DA+ ++
Sbjct: 18 TLLAKNLSFNITEDELKEVFED-----ALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEE 72
Query: 96 MNMIKLYGKPIRVNKA 111
++ G+ + +
Sbjct: 73 KQGAEIDGRSVSLYYT 88
Score = 52.0 bits (124), Expect = 2e-09
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
Query: 175 KNLDVGANIFIGNLDPEI---------------MRDPDTGNSKGFAFINYASFEASDASI 219
K + + NL I G SKG A+I + S ++ ++
Sbjct: 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNL 70
Query: 220 DAMHGQYLCNRPISVSYAFKKDSK 243
+ G + R +S+ Y +K
Sbjct: 71 EEKQGAEIDGRSVSLYYTGEKGGT 94
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 64.4 bits (156), Expect = 8e-14
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
I+VGGL ++ + + F G + + DR T +GYGF+ A+ A K
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 96 MNMIKLYGKPIRVNKASSHQK 116
N I + G+ VN A K
Sbjct: 72 PNPI-IDGRKANVNLAYLGAK 91
Score = 42.8 bits (100), Expect = 4e-06
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 22/90 (24%)
Query: 182 NIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASIDA 221
IF+G L + D TG S+G+ F+ A A++ +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 222 MHGQYLCNRPISVSYAFKKDS-KGDRHGSA 250
+ + R +V+ A+ + + G A
Sbjct: 72 PNP-IIDGRKANVNLAYLGAKPRSLQTGFA 100
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 64.0 bits (155), Expect = 1e-13
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPV--------VNVHMPKDRVTQTHQGYGFIEFMG 85
++ IYV GL+D V+ + + F Q G V +H+ D+ T +G + +
Sbjct: 8 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED 67
Query: 86 EEDADYAIKIMNMIKLYGKPIRVNKA 111
A A++ + G ++V+ A
Sbjct: 68 PPTAKAAVEWFDGKDFQGSKLKVSLA 93
Score = 53.6 bits (128), Expect = 6e-10
Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 31/120 (25%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVG 180
+ I++ L+ V L D F GV+ + +
Sbjct: 8 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHI------------------- 48
Query: 181 ANIFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKK 240
D +TG KG A ++Y + A+++ G+ + VS A KK
Sbjct: 49 ------------YLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKK 96
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 63.6 bits (154), Expect = 1e-13
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVN--VHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
+++GG+ + E + V + ++G+ F+E+ A A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 94 KIMNM--IKLYGKPIRVNKA 111
+ + I+L+G I V+ A
Sbjct: 63 RKLMPGRIQLWGHQIAVDWA 82
Score = 48.9 bits (116), Expect = 2e-08
Identities = 15/122 (12%), Positives = 32/122 (26%), Gaps = 39/122 (31%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+FIG + + + + + + +
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYAS-------------------------- 37
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQY--LCNRPISVSYAFKKD 241
D ++GFAF+ Y S A+ + + L I+V +A +
Sbjct: 38 -----------AADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEI 86
Query: 242 SK 243
Sbjct: 87 DV 88
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 63.1 bits (153), Expect = 2e-13
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 36 TIYVGGLDDKVSE-TLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
TIY+ L++K+ + L L + + +G F+ F A A++
Sbjct: 5 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 64
Query: 95 IMNMIKLYGKPIRVNKASS 113
M Y KP+R+ A +
Sbjct: 65 SMQGFPFYDKPMRIQYAKT 83
Score = 50.8 bits (121), Expect = 3e-09
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 22/82 (26%)
Query: 183 IFIGNLDPEI---------------------MRDPDTGNSKGFAFINYASFEASDASIDA 221
I+I NL+ +I + + +G AF+ + ++ ++ +
Sbjct: 6 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 65
Query: 222 MHGQYLCNRPISVSYAFKKDSK 243
M G ++P+ + YA K DS
Sbjct: 66 MQGFPFYDKPMRIQYA-KTDSD 86
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 63.3 bits (153), Expect = 2e-13
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
G+ + +Y+ L +V+E + LF + + +T +G FI F +E
Sbjct: 13 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEI 72
Query: 89 ADYAIKIMNMIKLYGKPIRVNKASSHQK 116
A A+ ++N KLYGK + + + ++
Sbjct: 73 AWQALHLVNGYKLYGKILVIEFGKNKKQ 100
Score = 43.6 bits (102), Expect = 2e-06
Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 23/92 (25%)
Query: 175 KNLDVGA---NIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYAS 211
+ + G +++ NL P + TG +G AFI + +
Sbjct: 10 SSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPN 69
Query: 212 FEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
E + ++ ++G L + + + + K +
Sbjct: 70 KEIAWQALHLVNGYKLYGKILVIEFGKNKKQR 101
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 62.8 bits (152), Expect = 2e-13
Identities = 13/86 (15%), Positives = 27/86 (31%)
Query: 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMG 85
G G I V + VS + + F + K G + F
Sbjct: 1 GASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFES 60
Query: 86 EEDADYAIKIMNMIKLYGKPIRVNKA 111
++A A+ +N + + +++
Sbjct: 61 RDEATAAVIDLNDRPIGSRKVKLVLG 86
Score = 53.5 bits (128), Expect = 4e-10
Identities = 8/76 (10%), Positives = 26/76 (34%), Gaps = 20/76 (26%)
Query: 182 NIFIGNLDPE--------------------IMRDPDTGNSKGFAFINYASFEASDASIDA 221
I + N+ ++ + G G A + + S + + A++
Sbjct: 11 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 70
Query: 222 MHGQYLCNRPISVSYA 237
++ + + +R + +
Sbjct: 71 LNDRPIGSRKVKLVLG 86
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 62.5 bits (151), Expect = 4e-13
Identities = 29/94 (30%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+++VG + + +E + ++F + GPVV+ + DR T +GYGF E+ +E A A++
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 96 MNMIKLYGKPIRVNKASSHQ-----KNLDVGANI 124
+N + G+ +RV+ A+S + K+L GA +
Sbjct: 70 LNGREFSGRALRVDNAASEKNKEELKSLGTGAPV 103
Score = 43.6 bits (102), Expect = 2e-06
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 20/85 (23%)
Query: 182 NIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASIDA 221
++F+GN+ E + D +TG KG+ F Y E + +++
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 222 MHGQYLCNRPISVSYAFKKDSKGDR 246
++G+ R + V A + +K +
Sbjct: 70 LNGREFSGRALRVDNAASEKNKEEL 94
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 61.3 bits (148), Expect = 7e-13
Identities = 13/85 (15%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPK-----DRVTQTHQGYGFIEFMGEEDAD 90
+YVG + ++E M + F + + + + F+EF ++
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 91 YAIKIMNMIKLYGKPIRVNKASSHQ 115
A+ + I G+ +++ + +Q
Sbjct: 63 QAM-AFDGIIFQGQSLKIRRPHDYQ 86
Score = 44.4 bits (104), Expect = 7e-07
Identities = 13/112 (11%), Positives = 35/112 (31%), Gaps = 35/112 (31%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+++GN+ + E+ + D F+A + + +A +
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRL----------------GGLTQAPGNP--------- 38
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVS 235
+ K FAF+ + S + + ++ G + + +
Sbjct: 39 ---------VLAVQINQDKNFAFLEFRSVDETTQAMA-FDGIIFQGQSLKIR 80
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 60.8 bits (147), Expect = 9e-13
Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
G + ++VG ++E + E F Q G V++V +P + + + F+ F ++ A
Sbjct: 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIP-----KPFRAFAFVTFADDQIAQS 57
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKN 117
+ + G + ++ A +
Sbjct: 58 L--CGEDLIIKGISVHISNAEPKHNS 81
Score = 41.2 bits (96), Expect = 1e-05
Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 21/76 (27%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFG----------------VILQTPK-----IMNMIKL 160
+ +F+G ++ E L + FS +G V + + +
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLII 65
Query: 161 YGKPIRVNKASSHQKN 176
G + ++ A +
Sbjct: 66 KGISVHISNAEPKHNS 81
Score = 40.0 bits (93), Expect = 3e-05
Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 17/84 (20%)
Query: 181 ANIFIGNLDPEI---------------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQ 225
+ +F+G ++ M + FAF+ +A + + +
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC--GEDL 63
Query: 226 YLCNRPISVSYAFKKDSKGDRHGS 249
+ + +S A K + S
Sbjct: 64 IIKGISVHISNAEPKHNSNSGPSS 87
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 60.2 bits (145), Expect = 2e-12
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+++ L E + E+ Q G + V + T+ +G F +FM +E A +
Sbjct: 10 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 69
Query: 96 MNM------IKLYGKPIRVNKASSHQK 116
++ +KL G+ ++V+ A + +
Sbjct: 70 ASLEAEGGGLKLDGRQLKVDLAVTRDE 96
Score = 40.2 bits (93), Expect = 3e-05
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 26/88 (29%)
Query: 180 GANIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASI 219
G +FI NL + + PDT +SKG AF + + EA+ +
Sbjct: 8 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCL 67
Query: 220 DAMH------GQYLCNRPISVSYAFKKD 241
A G L R + V A +D
Sbjct: 68 AAASLEAEGGGLKLDGRQLKVDLAVTRD 95
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 60.2 bits (145), Expect = 2e-12
Identities = 11/90 (12%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G+ ++ + +++ + + N G ++F E+
Sbjct: 2 GDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNED 61
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKN 117
DA + + ++ KL G+ V+ +
Sbjct: 62 DARKSER-LHRKKLNGREAFVHVVTLEDMR 90
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 59.7 bits (144), Expect = 3e-12
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+YV L SE ++ + F P + K R Y F+ F EDA A+K
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD------YAFVHFSNREDAVEAMKA 63
Query: 96 MNMIKLYGKPIRVNKA 111
+N L G PI V A
Sbjct: 64 LNGKVLDGSPIEVTLA 79
Score = 50.8 bits (121), Expect = 4e-09
Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 14/73 (19%)
Query: 183 IFIGNLDPEI--------------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLC 228
+++ NL + +AF+++++ E + ++ A++G+ L
Sbjct: 11 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 70
Query: 229 NRPISVSYAFKKD 241
PI V+ A D
Sbjct: 71 GSPIEVTLAKPVD 83
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 59.3 bits (143), Expect = 3e-12
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+YV G D ++ TL+ F G ++++ M + F+ + E AD A+
Sbjct: 7 TLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPP------RNCAFVTYEKMESADQAVAE 58
Query: 96 MNMIKLYGKPIRVNKA 111
+N ++ ++VN A
Sbjct: 59 LNGTQVESVQLKVNIA 74
Score = 47.3 bits (112), Expect = 5e-08
Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 180 GANIFIGNLD------------PEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYL 227
G +++ D + D + AF+ Y E++D ++ ++G +
Sbjct: 5 GNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQV 64
Query: 228 CNRPISVSYAFKK 240
+ + V+ A K+
Sbjct: 65 ESVQLKVNIARKQ 77
Score = 34.6 bits (79), Expect = 0.002
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 24/72 (33%)
Query: 121 GANIFIGNLDPEVDEKLLYDTFSAFGVILQTP----------------------KIMNMI 158
G +++ D + LL FS FG I+ +N
Sbjct: 5 GNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGT 62
Query: 159 KLYGKPIRVNKA 170
++ ++VN A
Sbjct: 63 QVESVQLKVNIA 74
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 58.9 bits (142), Expect = 4e-12
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+Y+G L V+ + +LF + + GY F+++ + A AI+
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKS------GYAFVDYPDQNWAIRAIET 56
Query: 96 MN-MIKLYGKPIRVNKA 111
++ ++L+GK + V+ +
Sbjct: 57 LSGKVELHGKIMEVDYS 73
Score = 47.8 bits (113), Expect = 4e-08
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 15/76 (19%)
Query: 183 IFIGNLDPEI--------------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQY-L 227
++IGNL P + G+AF++Y + +I+ + G+ L
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVEL 63
Query: 228 CNRPISVSYAFKKDSK 243
+ + V Y+ K +
Sbjct: 64 HGKIMEVDYSVSKKLR 79
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 58.3 bits (140), Expect = 8e-12
Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 36 TIYVGGLDDKVSET---LMWELFVQSGPVVNVHMPKDRVTQTHQ---GYGFIEFMGEEDA 89
++V GL ++++ E F + G + V + Q ++ ++ EDA
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 90 DYAIKIMNMIKLYGKPIRV 108
AI+ +N + + G+ ++
Sbjct: 70 LRAIQCVNNVVVDGRTLKA 88
Score = 46.0 bits (108), Expect = 2e-07
Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 44/124 (35%)
Query: 115 QKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQ 174
QKNL +F+ L + + + FG +GK +V
Sbjct: 7 QKNL-----VFVVGLSQRLADPEVLKRPEYFGK-------------FGKIHKVV------ 42
Query: 175 KNLDVGANIFIGNLDPEIMRDPDTGNS---KGFAFINYASFEASDASIDAMHGQYLCNRP 231
I S A++ Y E + +I ++ + R
Sbjct: 43 -----------------INNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 85
Query: 232 ISVS 235
+ S
Sbjct: 86 LKAS 89
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 58.6 bits (141), Expect = 8e-12
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T ++G L V+E + E F + + +G+G+ EF + A+
Sbjct: 17 TAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS- 75
Query: 96 MNMIKLYGKPIRVNKASSHQKN 117
+N L K IRV+ A Q
Sbjct: 76 LNEESLGNKRIRVDVADQAQDK 97
Score = 40.5 bits (94), Expect = 3e-05
Identities = 16/120 (13%), Positives = 34/120 (28%), Gaps = 40/120 (33%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
F+GNL +V E+ + + F
Sbjct: 18 AFLGNLPYDVTEESIKEFFRGL-------------------------------------- 39
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ + KGF + + ++ + +++ + L N+ I V A + K
Sbjct: 40 -NISAVRLPREPSNPERLKGFGYAEFEDLDSLLS-ALSLNEESLGNKRIRVDVADQAQDK 97
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 57.6 bits (138), Expect = 9e-12
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
T+ V L ++ +++ F GP+++V + + IEF + A AI
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFR--FARIEFARYDGALAAITK 59
Query: 96 MNMIKLYGKPIRVNKAS 112
+ + I V+ +
Sbjct: 60 THK-VVGQNEIIVSHLT 75
Score = 34.4 bits (78), Expect = 0.001
Identities = 8/74 (10%), Positives = 19/74 (25%), Gaps = 25/74 (33%)
Query: 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMI------------------------ 158
+ + NL ++ +Y F G I+ ++
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTH 61
Query: 159 -KLYGKPIRVNKAS 171
+ I V+ +
Sbjct: 62 KVVGQNEIIVSHLT 75
Score = 31.4 bits (70), Expect = 0.023
Identities = 9/74 (12%), Positives = 18/74 (24%), Gaps = 19/74 (25%)
Query: 182 NIFIGNLDPEI----MRD--------------PDTGNSKGFAFINYASFEASDASIDAMH 223
+ + NL + + FA I +A +
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFAR-YDGALAAITKT 60
Query: 224 GQYLCNRPISVSYA 237
+ + I VS+
Sbjct: 61 HKVVGQNEIIVSHL 74
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 57.7 bits (139), Expect = 2e-11
Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
I V L V+ ++ ++F + G V+ + +Q +++ A +A +
Sbjct: 10 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSL 65
Query: 97 NMIKLYGKPIRVNKASSHQKNLDVGAN 123
+ +Y + S +L+V N
Sbjct: 66 DGQNIYNACCTLRIDFSKLTSLNVKYN 92
Score = 42.7 bits (100), Expect = 4e-06
Identities = 17/129 (13%), Positives = 35/129 (27%), Gaps = 45/129 (34%)
Query: 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGAN 182
I + NL V +L+ FS FG +L+
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-------------------------- 42
Query: 183 IFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQ--YLCNRPISVSYAFKK 240
N++ A + YA ++ + ++ GQ Y + + ++
Sbjct: 43 -----------------NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 85
Query: 241 DSKGDRHGS 249
+
Sbjct: 86 SLNVKYNND 94
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 56.3 bits (135), Expect = 4e-11
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 35 ATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
AT+++ + VSE + LF +G VV Q + I+ E+A A+
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK----FFQKDRKMALIQMGSVEEAVQALI 66
Query: 95 IMNMIKLY-GKPIRVNKASS 113
++ L +RV+ + S
Sbjct: 67 DLHNHDLGENHHLRVSFSKS 86
Score = 32.4 bits (73), Expect = 0.011
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 17/74 (22%)
Query: 181 ANIFIGNLDPEI----------------MRDPDTGNSKGFAFINYASFEASDASIDAMHG 224
A + + N+ P + + A I S E + ++ +H
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHN 70
Query: 225 QYLC-NRPISVSYA 237
L N + VS++
Sbjct: 71 HDLGENHHLRVSFS 84
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 56.3 bits (135), Expect = 6e-11
Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 33 GDATIYVGGLD-DKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
G++ + V L+ ++V+ ++ LF + + ++ + ++ A
Sbjct: 1 GNSVLLVSNLNPERVTPQSLFILFGV-----YGDVQRVKILFNKKENALVQMADGNQAQL 55
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNL 118
A+ +N KL+GKPIR+ + L
Sbjct: 56 AMSHLNGHKLHGKPIRITLSKHQNVQL 82
Score = 45.5 bits (107), Expect = 4e-07
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 16/88 (18%)
Query: 183 IFIGNLDPEIMRDPD----------------TGNSKGFAFINYASFEASDASIDAMHGQY 226
+ + NL+PE + N K A + A + ++ ++G
Sbjct: 5 LLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHK 64
Query: 227 LCNRPISVSYAFKKDSKGDRHGSAAERL 254
L +PI ++ + ++ + R G + L
Sbjct: 65 LHGKPIRITLSKHQNVQLPREGQEDQGL 92
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 55.2 bits (132), Expect = 7e-11
Identities = 15/71 (21%), Positives = 32/71 (45%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+Y+ GL ++ + +L G +V+ D+ T +GYGF++F A A+ +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 97 NMIKLYGKPIR 107
+ + +
Sbjct: 61 KASGVQAQMAK 71
Score = 31.3 bits (70), Expect = 0.019
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 20/70 (28%)
Query: 183 IFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDASIDAM 222
++I L P + D T KG+ F+++ S A+ ++ A+
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 223 HGQYLCNRPI 232
+ +
Sbjct: 61 KASGVQAQMA 70
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 56.1 bits (135), Expect = 7e-11
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 51 MWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIMNMIKLYGKPIRVNK 110
+ + G + + + G + F E+ADY I+ ++ G+ I
Sbjct: 36 LRVECSKFGQIRKLLLFDRH----PDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQA 91
Query: 111 ASSHQK 116
Sbjct: 92 WDGTTD 97
Score = 46.8 bits (111), Expect = 1e-07
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 195 DPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
+ G A +++ E +D I + G++ R I+
Sbjct: 50 LLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAW 92
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 55.7 bits (133), Expect = 7e-11
Identities = 16/86 (18%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G +++G L+ S + + ++ + R T T++ +G+++F E
Sbjct: 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVR-TGTNRKFGYVDFESAE 65
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASS 113
D + A+ + +K++G I++ K
Sbjct: 66 DLEKAL-ELTGLKVFGNEIKLEKPKG 90
Score = 33.8 bits (76), Expect = 0.004
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 20/78 (25%)
Query: 182 NIFIGNLDPEIMRD-------------------PDTGNSKGFAFINYASFEASDASIDAM 222
N+FIGNL+P TG ++ F ++++ S E + +++ +
Sbjct: 15 NLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-L 73
Query: 223 HGQYLCNRPISVSYAFKK 240
G + I + +
Sbjct: 74 TGLKVFGNEIKLEKPKGR 91
Score = 32.6 bits (73), Expect = 0.011
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 26/76 (34%)
Query: 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPK--------------------------IMN 156
N+FIGNL+P L S +
Sbjct: 15 NLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELT 74
Query: 157 MIKLYGKPIRVNKASS 172
+K++G I++ K
Sbjct: 75 GLKVFGNEIKLEKPKG 90
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 55.6 bits (133), Expect = 1e-10
Identities = 13/90 (14%), Positives = 24/90 (26%), Gaps = 11/90 (12%)
Query: 33 GDATIYVGGLDDKV-----SETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G + + +D V + LF K I F
Sbjct: 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPL 57
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKN 117
A A ++ + GK +++ A +
Sbjct: 58 SAADARLRLHKTEFLGKEMKLYFAQTLHIG 87
Score = 40.9 bits (95), Expect = 2e-05
Identities = 6/84 (7%), Positives = 23/84 (27%), Gaps = 19/84 (22%)
Query: 182 NIFIGNLDPEIMRDPDT-------------------GNSKGFAFINYASFEASDASIDAM 222
+ + ++ + +T S IN+++ ++ + +
Sbjct: 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRL 66
Query: 223 HGQYLCNRPISVSYAFKKDSKGDR 246
H + + + +A
Sbjct: 67 HKTEFLGKEMKLYFAQTLHIGSSH 90
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 54.7 bits (131), Expect = 1e-10
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 7/84 (8%)
Query: 33 GDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYA 92
G + I V L + + +L ++ F+ + E A A
Sbjct: 4 GSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDR-------NKRTAFVTLLNGEQAQNA 56
Query: 93 IKIMNMIKLYGKPIRVNKASSHQK 116
I++ + GK + V +
Sbjct: 57 IQMFHQYSFRGKDLIVQLQPTDAL 80
Score = 40.1 bits (93), Expect = 2e-05
Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 14/76 (18%)
Query: 181 ANIFIGNLDPEI-------------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYL 227
+ I + NL + ++ +K AF+ + E + +I H
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSF 65
Query: 228 CNRPISVSYAFKKDSK 243
+ + V D+
Sbjct: 66 RGKDLIVQLQ-PTDAL 80
Score = 35.9 bits (82), Expect = 7e-04
Identities = 7/75 (9%), Positives = 21/75 (28%), Gaps = 21/75 (28%)
Query: 122 ANIFIGNLDPEVDEKLLYDTFSAFGVILQTP---------------------KIMNMIKL 160
+ I + NL + + + ++D + + ++ +
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSF 65
Query: 161 YGKPIRVNKASSHQK 175
GK + V +
Sbjct: 66 RGKDLIVQLQPTDAL 80
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 55.7 bits (133), Expect = 2e-10
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 32 DGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADY 91
D + V + V E + +LF + GP+ +V + DR T+ +GYGF++F A
Sbjct: 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQ 99
Query: 92 AIKIMNMIKLYGKPIRVNKASSHQKNLDV-----GANIFI 126
AI +N + K ++V A+S + + N ++
Sbjct: 100 AIAGLNGFNILNKRLKVALAASGHQRPGIAGAVGDGNGYL 139
Score = 44.1 bits (103), Expect = 2e-06
Identities = 15/96 (15%), Positives = 37/96 (38%), Gaps = 20/96 (20%)
Query: 178 DVGANIFIGNLDPEI--------------------MRDPDTGNSKGFAFINYASFEASDA 217
DV N+ + + + + D +T S+G+ F+ + S ++
Sbjct: 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQ 99
Query: 218 SIDAMHGQYLCNRPISVSYAFKKDSKGDRHGSAAER 253
+I ++G + N+ + V+ A + G+ +
Sbjct: 100 AIAGLNGFNILNKRLKVALAASGHQRPGIAGAVGDG 135
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 54.0 bits (129), Expect = 3e-10
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 36 TIYVGGLD-DKVSETLMWELFVQ-SGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
I + L + + E L+ E F + + F+ F ++ A+ A+
Sbjct: 6 EIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 65
Query: 94 KIMNMIKLYGKPIRVNKA 111
+ MN L + I V+ A
Sbjct: 66 Q-MNRSLLGNREISVSLA 82
Score = 43.6 bits (102), Expect = 1e-06
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 23/83 (27%)
Query: 180 GANIFIGNLDPEI----------------------MRDPDTGNSKGFAFINYASFEASDA 217
G I I NL E+ + + AF+ + + ++++
Sbjct: 4 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAER 63
Query: 218 SIDAMHGQYLCNRPISVSYAFKK 240
++ M+ L NR ISVS A KK
Sbjct: 64 AL-QMNRSLLGNREISVSLADKK 85
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 54.3 bits (130), Expect = 3e-10
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+ + D+ E + E+ + G V +++ + G +++F EEDA+ A+ +
Sbjct: 30 VEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDL 88
Query: 97 NMIKLYGKPIRVN 109
N G+PI
Sbjct: 89 NNRWFNGQPIHAE 101
Score = 40.4 bits (94), Expect = 3e-05
Identities = 8/114 (7%), Positives = 30/114 (26%), Gaps = 40/114 (35%)
Query: 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGAN 182
++ + E E++ + +G + +
Sbjct: 29 DVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVC---------------------------- 60
Query: 183 IFIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSY 236
D + G ++ + E ++ ++ ++ ++ +PI
Sbjct: 61 ------------DNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL 102
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 53.8 bits (128), Expect = 6e-10
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 28 GESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEE 87
G SG I L + E F + G + V +P+ +EF+
Sbjct: 4 GSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPL 57
Query: 88 DADYAIKIMNMIKLYGKPIRVNKASSHQKN 117
+A A + + K + P+ + A
Sbjct: 58 EARKAFRHLAYSKFHHVPLYLEWAPIGVFG 87
Score = 39.5 bits (91), Expect = 7e-05
Identities = 6/78 (7%), Positives = 16/78 (20%), Gaps = 14/78 (17%)
Query: 182 NIFIGNLDPEI--------------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYL 227
I NL + A + + + + +
Sbjct: 12 VILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKF 71
Query: 228 CNRPISVSYAFKKDSKGD 245
+ P+ + +A
Sbjct: 72 HHVPLYLEWAPIGVFGAA 89
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 51.3 bits (122), Expect = 3e-09
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 7/92 (7%)
Query: 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMG 85
GG + D + V GL S + + + G G +E++
Sbjct: 7 GGPPTRRSDFRVLVSGLPPSGSWQDLKDHMRE-------AGDVCYADVQKDGMGMVEYLR 59
Query: 86 EEDADYAIKIMNMIKLYGKPIRVNKASSHQKN 117
+ED +YA++ ++ K + + +
Sbjct: 60 KEDMEYALRKLDDTKFRSHEGETSYIRVYPER 91
Score = 40.9 bits (95), Expect = 1e-05
Identities = 10/81 (12%), Positives = 20/81 (24%), Gaps = 15/81 (18%)
Query: 183 IFIGNLDPEIMRD-------------PDTGNSKGFAFINYASFEASDASIDAMHGQYLCN 229
+ + L P G + Y E + ++ + +
Sbjct: 18 VLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKFRS 77
Query: 230 RPISVSYA--FKKDSKGDRHG 248
SY + + S G G
Sbjct: 78 HEGETSYIRVYPERSSGPSSG 98
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 51.2 bits (122), Expect = 3e-09
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++VGGL S + F + G + + + +I++ + A A
Sbjct: 19 RLWVGGLGPNTSLAALAREFDRFGSIRTIDH------VKGDSFAYIQYESLDAAQAACAK 72
Query: 96 MNMIKLYG--KPIRVNKASS 113
M L G + +RV+ A S
Sbjct: 73 MRGFPLGGPDRRLRVDFAKS 92
Score = 38.9 bits (90), Expect = 6e-05
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 16/79 (20%)
Query: 182 NIFIGNLDPEI--------------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYL 227
+++G L P +R D FA+I Y S +A+ A+ M G L
Sbjct: 19 RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPL 78
Query: 228 --CNRPISVSYAFKKDSKG 244
+R + V +A S G
Sbjct: 79 GGPDRRLRVDFAKSGPSSG 97
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 50.9 bits (121), Expect = 4e-09
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+Y+ L + E + + G V++ + +D +G GF E + I
Sbjct: 20 NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGT-SRGVGFARMESTEKCEAVIGH 78
Query: 96 MNMIKLYGKPIRVNKA 111
N + P
Sbjct: 79 FNGKFIKTPPGVSAPT 94
Score = 37.8 bits (87), Expect = 2e-04
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 19/75 (25%)
Query: 182 NIFIGNLDPEI-------------------MRDPDTGNSKGFAFINYASFEASDASIDAM 222
N++I NL + + +G S+G F S E +A I
Sbjct: 20 NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHF 79
Query: 223 HGQYLCNRPISVSYA 237
+G+++ P +
Sbjct: 80 NGKFIKTPPGVSAPT 94
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 51.0 bits (121), Expect = 5e-09
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 8/100 (8%)
Query: 26 GGGESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMG 85
G ++V GL + V E + E + G + V M + +EF
Sbjct: 7 GSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM------MPFKRQALVEFEN 60
Query: 86 EEDADYAIKIMNM--IKLYGKPIRVNKASSHQKNLDVGAN 123
+ A + + + G+ N ++S + +
Sbjct: 61 IDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNSG 100
Score = 36.7 bits (84), Expect = 5e-04
Identities = 8/90 (8%), Positives = 25/90 (27%), Gaps = 16/90 (17%)
Query: 170 ASSHQKNLDVGANIFIGNLDPEI--------------MRDPDTGNSKGFAFINYASFEAS 215
+S + V + + L + + K A + + + +++
Sbjct: 5 SSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSA 64
Query: 216 DASIDAMHGQ--YLCNRPISVSYAFKKDSK 243
+ Y+ + +Y+ K
Sbjct: 65 KECVTFAADVPVYIAGQQAFFNYSTSKRIT 94
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 50.5 bits (120), Expect = 5e-09
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
++Y+ G + + E G V+N+ M + + +G F+ F E A ++
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVE- 65
Query: 96 MNMIKLYGKPIRVNKA 111
K + +
Sbjct: 66 TPGQKYKETDLLILFK 81
Score = 28.9 bits (64), Expect = 0.21
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 22/79 (27%)
Query: 182 NIFIGNLDPEI-------------------MRDPDTGNSKGFAFINYASFEASDASIDAM 222
+++I + MR KG F+ + S E++ +
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFV-ET 66
Query: 223 HGQYLCNRPISVSYAFKKD 241
GQ + + FK D
Sbjct: 67 PGQKYKETDLLIL--FKDD 83
Score = 28.5 bits (63), Expect = 0.28
Identities = 4/37 (10%), Positives = 12/37 (32%)
Query: 123 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIK 159
+++I + + + G +L + K
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHK 44
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 50.5 bits (120), Expect = 7e-09
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 11/94 (11%)
Query: 28 GESGDGDA--------TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYG 79
G SG + +++ GL + +E ++ F P+ G
Sbjct: 1 GSSGSSGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIE--IGPDGRVTGEA 58
Query: 80 FIEFMGEEDADYAIKIMNMIKLYGKPIRVNKASS 113
+EF EDA A+ + + + + + S+
Sbjct: 59 DVEFATHEDAVAAMA-KDKANMQHRYVELFLNST 91
Score = 33.2 bits (75), Expect = 0.008
Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 19/88 (21%)
Query: 180 GANIFIGNLDPE------------------IMRDPDTGNSKGFAFINYASFEASDASIDA 221
G + + L + G G A + +A+ E + A++ A
Sbjct: 15 GHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAM-A 73
Query: 222 MHGQYLCNRPISVSYAFKKDSKGDRHGS 249
+ +R + + + G S
Sbjct: 74 KDKANMQHRYVELFLNSTAGTSGSGPSS 101
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 50.3 bits (119), Expect = 1e-08
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+Y+ GL + + + F + V + G GF+EF E D A+
Sbjct: 20 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC- 78
Query: 96 MNMIKLYGKPIRVNKAS 112
+ + + I+V+ +
Sbjct: 79 RHKQYMGNRFIQVHPIT 95
Score = 35.6 bits (81), Expect = 0.001
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 193 MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKD 241
+ G + G F+ + + A++ H QY+ NR I V KK
Sbjct: 51 IAYGPNGKATGEGFVEFRNEADYKAAL-CRHKQYMGNRFIQVHPITKKG 98
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 49.8 bits (118), Expect = 1e-08
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 7/82 (8%)
Query: 29 ESGDGDATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGE-E 87
E G + G LDD+ + LF G + + + G I F + +
Sbjct: 6 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR------GAKEGIILFKEKAK 59
Query: 88 DADYAIKIMNMIKLYGKPIRVN 109
+A K N L + V
Sbjct: 60 EALGKAKDANNGNLQLRNKEVT 81
Score = 35.9 bits (82), Expect = 0.001
Identities = 12/93 (12%), Positives = 28/93 (30%), Gaps = 18/93 (19%)
Query: 182 NIFIGNLDPEI--------------MRDPDTGNSKGFAFINYAS-FEASDASIDAMHGQY 226
F G+LD + ++ D I + + + +
Sbjct: 13 LKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGN 72
Query: 227 LCNRPISVSYAFKKDSKGDRHGSAAERLLAAQN 259
L R V++ +G+ A ++++ Q
Sbjct: 73 LQLRNKEVTWEVL---EGEVEKEALKKIIEDQQ 102
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 49.6 bits (118), Expect = 1e-08
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 51 MWELFVQSGPVVNVHMPKDRVTQTHQGYGF--IEFMGEEDADYAIKIMNMIKLYGKPIRV 108
+ + + G V ++ +P+ G G +EF D A++ + K + +
Sbjct: 31 VRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVT 90
Query: 109 NKAS 112
Sbjct: 91 KYCD 94
Score = 46.1 bits (109), Expect = 2e-07
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 188 LDPEIMRDPDTGN--SKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYA 237
EI R D G F+ + S ++ + G+ NR + Y
Sbjct: 42 KSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYC 93
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 48.9 bits (116), Expect = 2e-08
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 30 SGDGDATIYVGGLD-DKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEED 88
+ +++ K + +L G + N + FIE ED
Sbjct: 4 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI------LNKINEAFIEMATTED 57
Query: 89 ADYAIKIMNM--IKLYGKPIRVNKASSHQK 116
A A+ ++GKP+RV+ + +++
Sbjct: 58 AQAAVDYYTTTPALVFGKPVRVHLSQKYKR 87
Score = 32.4 bits (73), Expect = 0.014
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 25/77 (32%)
Query: 124 IFIGNLDP-EVDEKLLYDTFSAFGVILQTPKI------------------------MNMI 158
+ I + + L FGVI +
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPA 70
Query: 159 KLYGKPIRVNKASSHQK 175
++GKP+RV+ + +++
Sbjct: 71 LVFGKPVRVHLSQKYKR 87
Score = 31.2 bits (70), Expect = 0.029
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 17/72 (23%)
Query: 183 IFIGNLDP---------------EIMRDPDTGNSKGFAFINYASFEASDASIDA--MHGQ 225
+ I + ++ + N AFI A+ E + A++D
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPA 70
Query: 226 YLCNRPISVSYA 237
+ +P+ V +
Sbjct: 71 LVFGKPVRVHLS 82
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 48.3 bits (114), Expect = 2e-08
Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+++ L +V+ET + L + + + + F+E EE A +
Sbjct: 10 VLHIRKLPGEVTETEVIALGLP------FGKVTNILMLKGKNQAFLELATEEAAITMVNY 63
Query: 96 MNM--IKLYGKPIRVNKASSHQ 115
+ L +PI + ++ +
Sbjct: 64 YSAVTPHLRNQPIYIQYSNHKE 85
Score = 36.7 bits (84), Expect = 4e-04
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 16/78 (20%)
Query: 182 NIFIGNLDPEIMRD--------------PDTGNSKGFAFINYASFEASDASIDAMH--GQ 225
+ I L E+ K AF+ A+ EA+ ++
Sbjct: 10 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTP 69
Query: 226 YLCNRPISVSYAFKKDSK 243
+L N+PI + Y+ K+ K
Sbjct: 70 HLRNQPIYIQYSNHKELK 87
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 47.8 bits (113), Expect = 6e-08
Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+ GGL + VS + + + G V + M ++ Y F + E++ A
Sbjct: 22 VVANGGLGNGVSRNQLLPVLEKCGLVDALLM------PPNKPYSFARYRTTEESKRAYVT 75
Query: 96 MNMIKLY-GKPIRVNKASSHQKNL 118
+N ++ ++ + + +
Sbjct: 76 LNGKEVVDDLGQKITLYLNFVEKV 99
Score = 37.4 bits (86), Expect = 3e-04
Identities = 12/121 (9%), Positives = 27/121 (22%), Gaps = 50/121 (41%)
Query: 124 IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMNMIKLYGKPIRVNKASSHQKNLDVGANI 183
+ G L V L G++ N
Sbjct: 23 VANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------------------------- 57
Query: 184 FIGNLDPEIMRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLC-----NRPISVSYAF 238
++F Y + E S + ++G+ + + +++
Sbjct: 58 --------------------YSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97
Query: 239 K 239
K
Sbjct: 98 K 98
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 46.0 bits (108), Expect = 2e-07
Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 36 TIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKI 95
+++ L ++ +E ++ LF Q V + F+EF E ++ A +
Sbjct: 10 ILFLTNLPEETNEMMLSMLFNQFPGFKEVRLV-----PNRHDIAFVEFTTELQSNAAKEA 64
Query: 96 MNMIKLY-GKPIRVNKA 111
+ K+ +++ A
Sbjct: 65 LQGFKITPTHAMKITFA 81
Score = 36.4 bits (83), Expect = 4e-04
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 16/73 (21%)
Query: 183 IFIGNLDPEIMRD---------------PDTGNSKGFAFINYASFEASDASIDAMHGQYL 227
+F+ NL E N AF+ + + S+A+ +A+ G +
Sbjct: 11 LFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKI 70
Query: 228 C-NRPISVSYAFK 239
+ +++A K
Sbjct: 71 TPTHAMKITFAKK 83
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 44.9 bits (105), Expect = 4e-07
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 7/75 (9%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
+ V GL S + + + G G +EF+ +ED YA++ +
Sbjct: 3 VVVSGLPPSGSWQDLKDHMRE-------AGDVCYADVYRDGTGVVEFVRKEDMTYAVRKL 55
Query: 97 NMIKLYGKPIRVNKA 111
+ K
Sbjct: 56 DNTKFRSHEGETAYI 70
Score = 40.6 bits (94), Expect = 2e-05
Identities = 7/84 (8%), Positives = 16/84 (19%), Gaps = 13/84 (15%)
Query: 183 IFIGNLDPEIMRD-------------PDTGNSKGFAFINYASFEASDASIDAMHGQYLCN 229
+ + L P G + + E ++ + +
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 62
Query: 230 RPISVSYAFKKDSKGDRHGSAAER 253
+Y K R
Sbjct: 63 HEGETAYIRVKVDGPRSPSYGRSR 86
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 99
Score = 43.8 bits (102), Expect = 2e-06
Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 36 TIYVGGLDD-KVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIK 94
I++ L S++ + +L G + N + + FIE EDA +
Sbjct: 20 VIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL------MRMKSQAFIEMETREDAMAMVD 73
Query: 95 IMNM--IKLYGKPIRVNKASSHQK 116
+ G+ ++V+ + ++K
Sbjct: 74 HCLKKALWFQGRCVKVDLSEKYKK 97
Score = 27.3 bits (59), Expect = 1.0
Identities = 10/80 (12%), Positives = 19/80 (23%), Gaps = 17/80 (21%)
Query: 178 DVGANIFIGNLDPEIMRDPD-----------------TGNSKGFAFINYASFEASDASID 220
++G I + NL D S+ F + +
Sbjct: 16 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHC 75
Query: 221 AMHGQYLCNRPISVSYAFKK 240
+ R + V + K
Sbjct: 76 LKKALWFQGRCVKVDLSEKY 95
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 42.6 bits (100), Expect = 2e-06
Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 34 DATIYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAI 93
D + V G + ++ F Q G ++ M + I + + A A+
Sbjct: 4 DTWVTVFGFPQASASYIL-LQFAQYGNILKHVMSNTG------NWMHIRYQSKLQARKAL 56
Query: 94 KIMNMIKLYGKPI 106
+ +
Sbjct: 57 S-KDGRIFGESIM 68
Score = 34.9 bits (80), Expect = 0.001
Identities = 8/75 (10%), Positives = 19/75 (25%), Gaps = 15/75 (20%)
Query: 181 ANIFIGNLDPEI-------------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYL 227
+ + + N+ + I Y S + ++ + G+
Sbjct: 5 TWVTVFGFPQASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKAL-SKDGRIF 63
Query: 228 CNRP-ISVSYAFKKD 241
I V K+
Sbjct: 64 GESIMIGVKPCIDKN 78
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 41.1 bits (95), Expect = 7e-06
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 14/73 (19%)
Query: 183 IFIGNLDPEI-------------MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCN 229
I I L ++ ++ KG AF+ + E ++A+I+ H L
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLRE 60
Query: 230 RPISVSYAFKKDS 242
R +SV D+
Sbjct: 61 RELSVQLQ-PTDA 72
Score = 39.9 bits (92), Expect = 2e-05
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 37 IYVGGLDDKVSETLMWELFVQSGPVVNVHMPKDRVTQTHQGYGFIEFMGEEDADYAIKIM 96
I + GL V+ + +L K ++G F+ + E A+ AI
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYEL-------KYCFVDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 97 NMIKLYGKPIRVNKASS 113
+ +L + + V +
Sbjct: 54 HQSRLRERELSVQLQPT 70
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 35.2 bits (80), Expect = 0.002
Identities = 11/51 (21%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 193 MRDPDTGNSKGFAFINYASFEASDASIDAMHGQYLCNRPISVSYAFKKDSK 243
+ G S G AF+ +AS E ++ ++ H + + +R I + + + + +
Sbjct: 48 LPVDFQGRSTGEAFVQFASQEIAEKALK-KHKERIGHRYIEIFKSSRAEVR 97
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
virus type 2 [TaxId: 11909]}
Length = 137
Score = 27.5 bits (61), Expect = 1.0
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 275 PPPAPLPPPPPPINIMGLPPPPPS 298
P AP+P P P PPPP
Sbjct: 97 APAAPVPTPICPTTTPPPPPPPSP 120
Score = 26.7 bits (59), Expect = 1.9
Identities = 12/27 (44%), Positives = 12/27 (44%)
Query: 272 ADAPPPAPLPPPPPPINIMGLPPPPPS 298
P AP P P PI PPPPP
Sbjct: 91 NQVSPSAPAAPVPTPICPTTTPPPPPP 117
Score = 26.4 bits (58), Expect = 2.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 274 APPPAPLPPPPPPINIMGLPPP 295
P PPPPPP +PPP
Sbjct: 106 ICPTTTPPPPPPPSPEAHVPPP 127
Score = 26.4 bits (58), Expect = 2.9
Identities = 10/30 (33%), Positives = 11/30 (36%)
Query: 269 QLFADAPPPAPLPPPPPPINIMGLPPPPPS 298
+ PA P P PPPPPS
Sbjct: 90 KNQVSPSAPAAPVPTPICPTTTPPPPPPPS 119
Score = 26.0 bits (57), Expect = 4.0
Identities = 8/24 (33%), Positives = 8/24 (33%)
Query: 274 APPPAPLPPPPPPINIMGLPPPPP 297
AP P P PPP P
Sbjct: 97 APAAPVPTPICPTTTPPPPPPPSP 120
>d1bmlc3 d.15.5.1 (C:285-372) Streptokinase {Streptococcus
equisimilis [TaxId: 119602]}
Length = 88
Score = 25.4 bits (55), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 112 SSHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 148
++ ++NLD F DP KLLY+ AFG++
Sbjct: 31 TASERNLD-----FRDLYDPRDKAKLLYNNLDAFGIM 62
>d1w36b2 c.37.1.19 (B:486-880) Exodeoxyribonuclease V beta chain
(RecB), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 395
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/48 (22%), Positives = 12/48 (25%)
Query: 239 KKDSKGDRHGSAAERLLAAQNPLSQADRPHQLFADAPPPAPLPPPPPP 286
K D H SA RLL P A + A
Sbjct: 341 DKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTG 388
>d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]}
Length = 250
Score = 26.4 bits (57), Expect = 3.6
Identities = 7/50 (14%), Positives = 9/50 (18%), Gaps = 8/50 (16%)
Query: 263 QADRPH--QLFADAPPPAPLPPPPPPINIMG------LPPPPPSGLRASA 304
D+ +AP P L L A
Sbjct: 4 WQDKQFWQGYLREAPDLTLTSATYDPQLSHAVSLSYTLNSQLNHLLLKLA 53
>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 25.6 bits (56), Expect = 3.7
Identities = 7/25 (28%), Positives = 7/25 (28%)
Query: 274 APPPAPLPPPPPPINIMGLPPPPPS 298
AP P P PP P
Sbjct: 4 GSSGAPAEPAAPKSGEAETPPKHPG 28
>d2nuja1 d.38.1.1 (A:3-161) Hypothetical protein Jann_1972
{Jannaschia sp. CCS1 [TaxId: 290400]}
Length = 159
Score = 25.6 bits (55), Expect = 5.7
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 276 PPAPLPPPPPPINIMGLPPPPPSGLR 301
PP P P + + +P P GL
Sbjct: 2 PPYHTPLPAETLRALSIPAPWTFGLA 27
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc
6803 [TaxId: 1143]}
Length = 204
Score = 25.3 bits (54), Expect = 7.6
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 275 PPPAPLPPPPPPINIMGLPPPPPSGL 300
AP P P + L PPP
Sbjct: 174 CFFAPSQLLPSPNIKLELTAPPPEFF 199
>d1bt3a_ a.86.1.2 (A:) Catechol oxidase {Sweet potato (Ipomoea
batatas) [TaxId: 4120]}
Length = 341
Score = 25.5 bits (55), Expect = 8.6
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 276 PPAPLPP--------PPPPINIMGLPPPPPSGLR 301
PPA LPP PP NI+ P + ++
Sbjct: 14 PPADLPPGAVVDNCCPPVASNIVDYKLPAVTTMK 47
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a,
SAP-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 24.9 bits (54), Expect = 9.2
Identities = 6/40 (15%), Positives = 7/40 (17%)
Query: 264 ADRPHQLFADAPPPAPLPPPPPPINIMGLPPPPPSGLRAS 303
R N PP P +S
Sbjct: 97 VGRIEGDCESLNFSEVSSSSKDVENGGKDKPPQPGAKTSS 136
>d1x87a_ e.51.1.1 (A:) Urocanate hydratase HutU {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 545
Score = 25.5 bits (56), Expect = 9.2
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 187 NLDPEIMRDPD---TGNSKGFAFINYASFEA 214
NL P++ PD G A N+ +EA
Sbjct: 26 NLHPDVAERPDELIVYGGIGKAARNWECYEA 56
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 24.7 bits (54), Expect = 9.5
Identities = 6/28 (21%), Positives = 8/28 (28%)
Query: 272 ADAPPPAPLPPPPPPINIMGLPPPPPSG 299
A +P A P P P +
Sbjct: 17 AASPGGAQAPATTGAAGTAPTAPQPTAA 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.136 0.403
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,154,016
Number of extensions: 55557
Number of successful extensions: 741
Number of sequences better than 10.0: 1
Number of HSP's gapped: 577
Number of HSP's successfully gapped: 296
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.8 bits)