BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3020
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 38/48 (79%)
Query: 101 KISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+++ LK+KGN AL N +A++ YSEAIKLD NH+L+SNRSAA+AK
Sbjct: 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK 50
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 27/36 (75%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV 40
+ L +L R++E+ TYEEGLK + NN Q+KE ++++
Sbjct: 80 AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 100 AKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
A+ LK +GN ++ NF+ A+ Y +AI+L+ N + F NR+AA++K
Sbjct: 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK 58
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNNEQMKEAIK 38
LS L ++ E+++ Y++ L+LDP+NE K +K
Sbjct: 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLK 121
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 104 LLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI 150
++K+KGN Q ++ +A++ Y+EAIK + + L+SNR+A + K +
Sbjct: 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL 64
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 106 KDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
K+KGN + ++ A+ Y+EA+K D N IL+SNR+A K
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK 59
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 24/36 (66%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV 40
+CL + + ++ YE+ L++DP+NE+ +E +++
Sbjct: 89 ACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF 146
LK++GN A NF EAI+ Y AI+LD + +SN SA +
Sbjct: 24 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACY 65
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF 146
LK++GN A NF EAI+ Y AI+LD + +SN SA +
Sbjct: 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACY 69
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 31/136 (22%)
Query: 11 GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQ--LQ 68
G Y E+I Y++ L+LDP + EA ++ N +GD + + + Q L+
Sbjct: 15 GDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYK---QGD-----YDEAIEYYQKALE 63
Query: 69 LDPRT--------KPFLSDPSYVQMIKEIQK----DPSLMTLEAKISLLKDKGNAALQAN 116
LDPR+ + Y + I+ QK DP + EA +L GNA +
Sbjct: 64 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNL----GNAYYKQG 117
Query: 117 NFKEAIEAYSEAIKLD 132
++ EAIE Y +A++LD
Sbjct: 118 DYDEAIEYYQKALELD 133
Score = 32.7 bits (73), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 18/94 (19%)
Query: 67 LQLDPRT--------KPFLSDPSYVQMIKEIQK----DPSLMTLEAKISLLKDKGNAALQ 114
L+LDPR+ + Y + I+ QK DP + EA +L GNA +
Sbjct: 28 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNL----GNAYYK 81
Query: 115 ANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
++ EAIE Y +A++LD + + N A+ K
Sbjct: 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 115
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
GNA + ++ EAIE Y +A++LD + + N A+ K
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 47
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA 147
LK +GNAA+ + +AI+ Y++A+ + N I SNR+AA++
Sbjct: 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS 56
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA 149
LK + N +A +++ AI+ YS+AI+L+ +N I + NRS A+ +
Sbjct: 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT 53
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF 146
LK + N +A +++ AI+ YS+AI+L+ +N I + NRS A+
Sbjct: 24 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAY 65
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF 146
LK + N +A +++ AI+ YS+AI+L+ +N I + NRS A+
Sbjct: 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAY 57
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 33.5 bits (75), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 106 KDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF 146
KD GNAA + +F++A Y +AI+LD +N ++N++A +
Sbjct: 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVY 52
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 45/129 (34%)
Query: 11 GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLD 70
G Y E+I Y++ L+LDPNN EA ++ N
Sbjct: 23 GDYDEAIEYYQKALELDPNN---AEAWYNLGN---------------------------- 51
Query: 71 PRTKPFLSDPSYVQMIKEIQK----DPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYS 126
+ Y + I+ QK DP+ EA +L GNA + ++ EAIE Y
Sbjct: 52 ----AYYKQGDYDEAIEYYQKALELDPN--NAEAWYNL----GNAYYKQGDYDEAIEYYQ 101
Query: 127 EAIKLDGTN 135
+A++LD N
Sbjct: 102 KALELDPNN 110
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 11 GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 44
G Y E+I Y++ L+LDPNN + K+ + + + ++
Sbjct: 91 GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 76 FLSDPSYVQMIKEIQK----DPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKL 131
+ Y + I+ QK DP+ EA +L GNA + ++ EAIE Y +A++L
Sbjct: 19 YYKQGDYDEAIEYYQKALELDPN--NAEAWYNL----GNAYYKQGDYDEAIEYYQKALEL 72
Query: 132 DGTNHILFSNRSAAFAK 148
D N + N A+ K
Sbjct: 73 DPNNAEAWYNLGNAYYK 89
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
GNA + ++ EAIE Y +A++LD N + N A+ K
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 55
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT---NHILFSNRSAAFAK 148
+ L+ +GN + ++ A+ AY++A+ LD T +L NR+A K
Sbjct: 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK 77
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 11 GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 44
G Y E+I Y++ L+LDPNN + K+ + + + ++
Sbjct: 57 GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 90
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
GNA + ++ EAIE Y +A++LD N + N A+ K
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 55
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 11 GRYKESISTYEEGLKLDPNN 30
G Y E+I Y++ L+LDPNN
Sbjct: 23 GDYDEAIEYYQKALELDPNN 42
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 76 FLSDPSYVQMIKEIQK----DPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKL 131
+ Y + I+ QK DP+ EA +L GNA + ++ EAIE Y +A++L
Sbjct: 19 YYKQGDYDEAIEYYQKALELDPN--NAEAWYNL----GNAYYKQGDYDEAIEYYQKALEL 72
Query: 132 DGTN 135
D N
Sbjct: 73 DPNN 76
>pdb|2LLV|A Chain A, Solution Structure Of The Yeast Sti1 Dp1 Domain
Length = 71
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Query: 54 FANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMI-----------KEIQKDPSLMTLEAKI 102
LF+DPN+ L+ +P+T + DP V + +++ DP LMT+ A +
Sbjct: 6 LTQLFADPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMATL 65
>pdb|4I17|A Chain A, Crystal Structure Of A Hypothetical Protein (Bf2334) From
Bacteroides Fragilis Nctc 9343 At 1.50 A Resolution
Length = 228
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKL 131
LK++GN AL A N+ A E YSE +KL
Sbjct: 10 LKNEGNDALNAKNYAVAFEKYSEYLKL 36
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 29.6 bits (65), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 106 KDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
K++GN+ + ++EA+ Y + I N + +SN++ A K
Sbjct: 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK 50
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 24/34 (70%)
Query: 11 GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 44
G Y+++I Y++ L+LDPNN + K+ + + + ++
Sbjct: 91 GDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQ 124
Score = 29.3 bits (64), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
GNA + ++++AIE Y +A++LD N + R A+ K
Sbjct: 50 GNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYK 89
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
K+ GNA + ++++AIE Y +A++LD N + N A+ K
Sbjct: 12 WKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYK 55
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 37/125 (29%)
Query: 11 GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLD 70
G Y+++I Y++ L+LDPNN + NL
Sbjct: 23 GDYQKAIEYYQKALELDPNN--------------------ASAWYNL------------- 49
Query: 71 PRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIK 130
+ Y + I+ QK L AK + GNA + ++++AIE Y +A++
Sbjct: 50 --GNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRR--GNAYYKQGDYQKAIEDYQKALE 105
Query: 131 LDGTN 135
LD N
Sbjct: 106 LDPNN 110
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA 147
LKDKGN + + +AI+ Y+ A++L + + +SN SA +
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALEL-KEDPVFYSNLSACYV 50
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 95 LMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN--HILFSNR 142
L+T E+ + G+A+LQ NFK AIEA++ A L+ H F+N+
Sbjct: 674 LLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNK 723
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAI 37
L LGR+ E+I +++ L L PN ++ AI
Sbjct: 119 ALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAI 37
L LGR+ E+I +++ L L PN ++ AI
Sbjct: 119 ALKNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAI 37
L LGR+ E+I +++ L L PN ++ AI
Sbjct: 119 ALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 91 KDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAI-KLD 132
+D L ++EA L+ KGN ++KEAI+AY +A+ +LD
Sbjct: 4 EDDKLKSVEA----LRQKGNELFVQKDYKEAIDAYRDALTRLD 42
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 43 QEMNDMNRGDPFANLFSD-PNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAK 101
++M ++ R PF+ + P + L++D + L + + M E +KDP ++ +
Sbjct: 327 KQMQNLKRLGPFSEILGLLPGVPQGLKVDEKAIKRL-EAIVLSMTPEERKDPRILNGSRR 385
Query: 102 ISLLKDKGNAALQANNFKEAIE 123
+ K G + + N F +A E
Sbjct: 386 KRIAKGSGTSVQEVNRFIKAFE 407
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAI 37
L LGR+ E+I +++ L L PN ++ AI
Sbjct: 119 ALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
GNA + ++ EAIE Y +A++LD + + N A+ K
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 49
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 87 KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLD 132
K ++ DP + EA +L GNA + ++ EAIE Y +A++LD
Sbjct: 28 KALELDP--RSAEAWYNL----GNAYYKQGDYDEAIEYYQKALELD 67
>pdb|3UNV|A Chain A, Pantoea Agglomerans Phenylalanine Aminomutase
pdb|3UNV|B Chain B, Pantoea Agglomerans Phenylalanine Aminomutase
Length = 547
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 97 TLEAKISLLKDKGNAALQANNFKEAIEAYSEAI 129
T+ A+I L +GN+A+ NFK+ IE Y++ I
Sbjct: 124 TMLARIVSLS-RGNSAISIVNFKKLIEIYNQGI 155
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 11 GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 44
G Y E+I Y++ L+L PNN + K+ + + + ++
Sbjct: 91 GDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQ 124
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 76 FLSDPSYVQMIKEIQKDPSLM--TLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDG 133
+ Y + I+ QK L EA +L GNA + ++ EAIE Y +A++L
Sbjct: 19 YYKQGDYDEAIEYYQKALELYPNNAEAWYNL----GNAYYKQGDYDEAIEYYQKALELYP 74
Query: 134 TNHILFSNRSAAFAK 148
N + N A+ K
Sbjct: 75 NNAEAWYNLGNAYYK 89
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
LK++GN + EA Y AI + + ++NR+ + K
Sbjct: 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK 50
>pdb|2QGN|A Chain A, Crystal Structure Of Trna Isopentenylpyrophosphate
Transferase (Bh2366) From Bacillus Halodurans, Northeast
Structural Genomics Consortium Target Bhr41.
pdb|3EXA|A Chain A, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|B Chain B, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|C Chain C, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|D Chain D, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41
Length = 322
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 78 SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDG 133
+D Y ++ + L K+S + K AA+ NN++ I A E IKL G
Sbjct: 119 ADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAAAIHPNNYRRVIRAL-EIIKLTG 173
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
LK++GN + EA Y AI + + ++NR+ + K
Sbjct: 12 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK 55
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 116 NNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+++ A++AY+E IK + +SNR+AA AK
Sbjct: 18 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK 50
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 92 DPSLMTLEAK---ISLLKDKGNAALQANNFKEAIEAYSEAI 129
DP MT E K + L+ +GN + + KEA Y +AI
Sbjct: 1 DPWAMTAEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAI 41
>pdb|3ETZ|A Chain A, Crystal Structure Of Bacterial Adhesin Fada L76a Mutant
pdb|3ETZ|B Chain B, Crystal Structure Of Bacterial Adhesin Fada L76a Mutant
Length = 119
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 9 YLGRYKESISTYEEGL-KLDPNNEQMKEAIKD 39
Y +Y+E+ S YE+ L KL+ EQ K I D
Sbjct: 69 YKSQYQEAASKYEDALKKLEAEMEQQKAVISD 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,343,132
Number of Sequences: 62578
Number of extensions: 163533
Number of successful extensions: 563
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 482
Number of HSP's gapped (non-prelim): 89
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)