RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3020
(150 letters)
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 72.2 bits (178), Expect = 2e-17
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
LK+KGN AL N +A++ YSEAIKLD NH+L+SNRSAA+AK
Sbjct: 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK 50
Score = 46.4 bits (111), Expect = 1e-07
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 43
+ L +L R++E+ TYEEGLK + NN Q+KE ++++ +
Sbjct: 80 AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 118
Score = 31.8 bits (73), Expect = 0.035
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTN 135
K A N F+EA Y E +K + N
Sbjct: 78 KAAALEFLNRFEEAKRTYEEGLKHEANN 105
Score = 26.8 bits (60), Expect = 1.7
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 14/43 (32%)
Query: 11 GRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 39
G +++ Y E +KLDP+N ++A +D
Sbjct: 18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 60
Score = 24.4 bits (54), Expect = 10.0
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
+ G Y+++ + + L P+
Sbjct: 47 AYAKKGDYQKAYEDGCKTVDLKPDW 71
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 69.8 bits (171), Expect = 5e-16
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 93 PSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
P M + LK +GNAA+ + +AI+ Y++A+ + N I SNR+AA++
Sbjct: 2 PRSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA 57
Score = 40.1 bits (94), Expect = 6e-05
Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNN--EQMKEAIKDVRNQEMNDMNRGD 52
+ YK + YE+G++ + N + MK ++ + +++ + NRG
Sbjct: 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK-RKIEEANRGA 135
Score = 32.4 bits (74), Expect = 0.026
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G A ++K A EAY + I+ +G R K
Sbjct: 85 LGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125
Score = 25.1 bits (55), Expect = 8.1
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAA 145
A + ++A E A +D +S A
Sbjct: 52 AAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 68.4 bits (168), Expect = 5e-16
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
K+KGN + ++ A+ Y+EA+K D N IL+SNR+A K
Sbjct: 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK 59
Score = 44.1 bits (105), Expect = 1e-06
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 41
CL + + ++ YE+ L++DP+NE+ +E +++
Sbjct: 90 CLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125
Score = 29.9 bits (68), Expect = 0.17
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTN 135
K + + +A AY +A+++D +N
Sbjct: 87 KAACLVAMREWSKAQRAYEDALQVDPSN 114
Score = 28.0 bits (63), Expect = 0.64
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 14/43 (32%)
Query: 11 GRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 39
G Y ++ Y E +K DP N + + A+ D
Sbjct: 27 GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDD 69
Score = 25.3 bits (56), Expect = 6.5
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
CL+ L ++ ++ + ++LD
Sbjct: 56 CLTKLMEFQRALDDCDTCIRLDSKF 80
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 66.6 bits (163), Expect = 4e-15
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
LK++GN + EA Y AI + + ++NR+ + K
Sbjct: 12 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK 55
Score = 33.8 bits (78), Expect = 0.006
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN-----EQMKEAIKDVRNQEMNDM 48
C + Y E+I+ + L + + A++ + + N +
Sbjct: 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSI 133
Score = 30.4 bits (69), Expect = 0.12
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNH 136
G L+ ++ EAI A L
Sbjct: 83 LGQCQLEMESYDEAIANLQRAYSLAKEQR 111
Score = 26.9 bits (60), Expect = 1.9
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 14/43 (32%)
Query: 11 GRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 39
+Y E+ + Y + +P +Q ++A+ D
Sbjct: 23 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 65
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 67.4 bits (165), Expect = 4e-15
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
LK + N +A +++ AI+ YS+AI+L+ +N I + NRS A+ +
Sbjct: 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR 59
Score = 41.6 bits (98), Expect = 1e-05
Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
+ LG+++ ++ YE +K+ P+++ K ++ N+ + A ++
Sbjct: 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC-NKIVKQKAFERAIAGDEHKRSVV 147
Query: 65 VQLQLDP 71
L ++
Sbjct: 148 DSLDIES 154
Score = 30.0 bits (68), Expect = 0.16
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTN 135
+ + + F+ A+ Y +K+ +
Sbjct: 87 RAASNMALGKFRAALRDYETVVKVKPHD 114
Score = 25.0 bits (55), Expect = 9.8
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 14/43 (32%)
Query: 11 GRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 39
Y+ +I Y + ++L+P+N E A+ D
Sbjct: 27 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD 69
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 66.5 bits (163), Expect = 4e-15
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
LK +GN ++ NF+ A+ Y +AI+L+ N + F NR+AA++K
Sbjct: 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK 58
Score = 43.0 bits (102), Expect = 3e-06
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 43
LS L ++ E+++ Y++ L+LDP+NE K +K +
Sbjct: 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126
Score = 36.0 bits (84), Expect = 0.001
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G A N EA+ Y +A++LD N SN A K
Sbjct: 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126
Score = 29.5 bits (67), Expect = 0.23
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAA 145
A + N+ A++ AI +D + A
Sbjct: 53 AAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89
Score = 27.6 bits (62), Expect = 0.96
Identities = 6/44 (13%), Positives = 17/44 (38%), Gaps = 14/44 (31%)
Query: 10 LGRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 39
+ ++ ++ Y + ++L+P N A++D
Sbjct: 25 VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQD 68
Score = 27.2 bits (61), Expect = 1.2
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 14/48 (29%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 39
S LG Y ++ E + +DP + EA+
Sbjct: 55 AYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAY 102
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 66.5 bits (163), Expect = 4e-15
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+K+KGN Q ++ +A++ Y+EAIK + + L+SNR+A + K
Sbjct: 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62
Score = 43.4 bits (103), Expect = 2e-06
Identities = 7/41 (17%), Positives = 19/41 (46%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMN 46
L + Y +++ Y++ L LD + ++ + + + N
Sbjct: 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133
Score = 31.1 bits (71), Expect = 0.074
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTN 135
K A ++ +A++ Y +A+ LD +
Sbjct: 90 KAAALEAMKDYTKAMDVYQKALDLDSSC 117
Score = 26.8 bits (60), Expect = 2.0
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 14/43 (32%)
Query: 11 GRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 39
G Y +++ Y E +K +P + + + A+KD
Sbjct: 30 GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKD 72
Score = 24.9 bits (55), Expect = 8.4
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF 146
+ F+ A++ E I+L+ T ++ ++AA
Sbjct: 57 AACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94
Score = 24.9 bits (55), Expect = 8.5
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
C + L ++ ++ EE ++L+P
Sbjct: 59 CYTKLLEFQLALKDCEECIQLEPTF 83
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 65.4 bits (160), Expect = 8e-15
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ +G +++ A++AY+E IK + +SNR+AA AK
Sbjct: 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK 50
Score = 32.6 bits (75), Expect = 0.015
Identities = 4/31 (12%), Positives = 8/31 (25%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEA 36
+ Y ++ T + D A
Sbjct: 81 AQIAVKEYASALETLDAARTKDAEVNNGSSA 111
Score = 30.7 bits (70), Expect = 0.080
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAA 145
K A + + A+E A D + S R
Sbjct: 78 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 115
Score = 27.6 bits (62), Expect = 1.1
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 14/43 (32%)
Query: 11 GRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 39
+ ++ Y E +K P + EAI D
Sbjct: 18 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 60
Score = 25.3 bits (56), Expect = 6.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 111 AALQANNFKEAIEAYSEAIKLDGTN 135
A + +F EAI ++AI+ D
Sbjct: 47 ALAKLMSFPEAIADCNKAIEKDPNF 71
Score = 24.9 bits (55), Expect = 8.0
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
L+ L + E+I+ + ++ DPN
Sbjct: 47 ALAKLMSFPEAIADCNKAIEKDPNF 71
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 64.6 bits (158), Expect = 1e-14
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
K++GN+ + ++EA+ Y + I N + +SN++ A K
Sbjct: 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK 50
Score = 29.2 bits (66), Expect = 0.26
Identities = 5/42 (11%), Positives = 15/42 (35%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA 149
K A ++ + +AI+ + ++ T + +
Sbjct: 44 KAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLE 85
Score = 28.8 bits (65), Expect = 0.33
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
L LG Y ++I ++GL+
Sbjct: 47 ALIKLGEYTQAIQMCQQGLRYTSTA 71
Score = 28.4 bits (64), Expect = 0.42
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 14/43 (32%)
Query: 11 GRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 39
G Y+E++ Y++ + P N + +AI+
Sbjct: 18 GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQM 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 64.6 bits (157), Expect = 2e-13
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
LK++GN + EA Y AI + + ++NR+ + K
Sbjct: 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK 50
Score = 33.0 bits (75), Expect = 0.028
Identities = 12/130 (9%), Positives = 36/130 (27%), Gaps = 21/130 (16%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN-----EQMKEAIKDVRNQEMNDMNRGDPFANLFSD 60
C + Y E+I+ + L + + A++ + + N +
Sbjct: 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEE---------- 130
Query: 61 PNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKE 120
++ + +L+ + +E+++ E + A +
Sbjct: 131 ----RRIHQESELHSYLTRLIAAERERELEECQ--RNHEGHEDDGHIRAQQACIEAKHDK 184
Query: 121 AIEAYSEAIK 130
+ E
Sbjct: 185 YMADMDELFS 194
Score = 26.8 bits (59), Expect = 3.3
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFS 140
G L+ ++ EAI A L + F
Sbjct: 78 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110
Score = 26.0 bits (57), Expect = 5.5
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 14/43 (32%)
Query: 11 GRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 39
+Y E+ + Y + +P +Q ++A+ D
Sbjct: 18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 61.9 bits (151), Expect = 2e-13
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
K+ GN A + +F A++ Y +A +LD TN +N++A + +
Sbjct: 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE 50
Score = 33.8 bits (78), Expect = 0.006
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNNEQMK---EAIKDVRNQE 44
+ +YK++I Y + L + +K +A K ++ QE
Sbjct: 87 NSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQE 129
Score = 30.7 bits (70), Expect = 0.076
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHIL 138
GN+ + +K+AI Y++++ T +L
Sbjct: 85 IGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL 115
Score = 30.4 bits (69), Expect = 0.097
Identities = 8/59 (13%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 89 IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA 147
+ DP+ ++ + ++ + ++ + E +AI++ N + + A+A
Sbjct: 31 KELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83
Score = 25.7 bits (57), Expect = 4.0
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
G Y + E+ +++ N
Sbjct: 47 VYFEKGDYNKCRELCEKAIEVGREN 71
Score = 25.7 bits (57), Expect = 4.4
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 11 GRYKESISTYEEGLKLDPNN 30
+ ++ Y++ +LDP N
Sbjct: 18 KDFDTALKHYDKAKELDPTN 37
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 61.2 bits (149), Expect = 5e-13
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGT---NHILFSNRSAAFAK 148
L+ +GN + ++ A+ AY++A+ LD T +L NR+A K
Sbjct: 31 LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK 77
Score = 40.0 bits (94), Expect = 4e-05
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 41
L LGR +++ + + L+P N+ +EA++++
Sbjct: 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143
Score = 27.3 bits (61), Expect = 1.3
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTN 135
+ A + +A+ + L+ N
Sbjct: 105 RSQALEKLGRLDQAVLDLQRCVSLEPKN 132
Score = 26.6 bits (59), Expect = 2.5
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 11 GRYKESISTYEEGLKLDPNNEQ 32
G Y +++ Y + L LD +
Sbjct: 42 GDYGGALAAYTQALGLDATPQD 63
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 59.2 bits (144), Expect = 2e-12
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
KD GNAA + +F++A Y +AI+LD +N ++N++A + +
Sbjct: 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE 54
Score = 32.3 bits (74), Expect = 0.020
Identities = 3/31 (9%), Positives = 10/31 (32%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKE 35
+ ++ + L + E +K+
Sbjct: 91 NAFQKQNDLSLAVQWFHRSLSEFRDPELVKK 121
Score = 31.1 bits (71), Expect = 0.053
Identities = 5/40 (12%), Positives = 15/40 (37%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA 147
K + F E ++ +A+++ + + A +
Sbjct: 48 KAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87
Score = 31.1 bits (71), Expect = 0.060
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHIL 138
GNA + N+ A++ + ++ ++
Sbjct: 89 AGNAFQKQNDLSLAVQWFHRSLSEFRDPELV 119
Score = 26.9 bits (60), Expect = 1.9
Identities = 3/32 (9%), Positives = 11/32 (34%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAI 37
++ E + E+ +++ + I
Sbjct: 51 VYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82
Score = 24.9 bits (55), Expect = 8.3
Identities = 5/20 (25%), Positives = 14/20 (70%)
Query: 11 GRYKESISTYEEGLKLDPNN 30
++++ Y++ ++LDP+N
Sbjct: 22 KDFEKAHVHYDKAIELDPSN 41
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 57.9 bits (140), Expect = 2e-12
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 53 PFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLE 99
LF+DPN+ L+ +P+T + DP V + +++P + +
Sbjct: 5 GLTQLFADPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQD 51
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 60.9 bits (148), Expect = 7e-12
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
LK + N +A +++ AI+ YS+AI+L+ +N I + NRS A+ +
Sbjct: 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR 52
Score = 28.5 bits (64), Expect = 0.92
Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 14/105 (13%)
Query: 10 LGRYKESISTYEEGLKLDPNN----EQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
LG+++ ++ YE +K+ P++ + +E K V+ + GD ++
Sbjct: 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE-----HKRSVVD 141
Query: 66 QLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGN 110
L ++ T + Y E K ++ ++ + KD+
Sbjct: 142 SLDIESMT----IEDEYSGPKLEDGK-VTISFMKELMQWYKDQKK 181
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 52.2 bits (126), Expect = 5e-09
Identities = 25/163 (15%), Positives = 51/163 (31%), Gaps = 44/163 (26%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVR------NQEM 45
G Y+ +IST + ++ + D++ + +
Sbjct: 47 AEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL 106
Query: 46 NDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLL 105
+ D L + + + E +P K
Sbjct: 107 TEHRTADILTKLRNAEKELKKAE------------------AEAYVNPE------KAEEA 142
Query: 106 KDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ +G +++ A++AY+E IK + +SNR+AA AK
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK 185
Score = 42.9 bits (102), Expect = 1e-05
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
K +GN +A F EAIE Y++A +L + +NR+AA +
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYE 50
Score = 34.8 bits (81), Expect = 0.005
Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 37/143 (25%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
L+ L ++ + E ++P E + G +
Sbjct: 114 ILTKLRNAEKELKKAEAEAYVNPEKA---EEAR----------LEG----------KEYF 150
Query: 66 QLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAY 125
+ +Y +MIK +D + ++ A + +F EAI
Sbjct: 151 TKS-----DWPNAVKAYTEMIKRAPEDARGYS---------NRAAALAKLMSFPEAIADC 196
Query: 126 SEAIKLDGTNHILFSNRSAAFAK 148
++AI+ D + ++ A
Sbjct: 197 NKAIEKDPNFVRAYIRKATAQIA 219
Score = 32.9 bits (76), Expect = 0.023
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ A + ++ AI ++A++ + S +FA+
Sbjct: 44 RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84
Score = 32.9 bits (76), Expect = 0.027
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAA 145
K A + + A+E A D + S R
Sbjct: 213 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250
Score = 31.8 bits (73), Expect = 0.055
Identities = 3/27 (11%), Positives = 7/27 (25%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQ 32
+ Y ++ T + D
Sbjct: 216 AQIAVKEYASALETLDAARTKDAEVNN 242
Score = 31.0 bits (71), Expect = 0.12
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 14/48 (29%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 39
L+ L + E+I+ + ++ DPN ++ A++
Sbjct: 182 ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 51.6 bits (124), Expect = 1e-08
Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 29/147 (19%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
LG ++ S+S E LKLD ++++ K V+ L +
Sbjct: 220 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK-----------LNKLIESAEELI 268
Query: 66 QLQLDPRTKPFLSDPSYVQMIKE----IQKDPSLMTLEAKISLLKDKGNAALQANNFKEA 121
+ Y + ++ +PS+ + + + + EA
Sbjct: 269 RDG------------RYTDATSKYESVMKTEPSIAEYTVR--SKERICHCFSKDEKPVEA 314
Query: 122 IEAYSEAIKLDGTNHILFSNRSAAFAK 148
I SE ++++ N +R+ A+
Sbjct: 315 IRVCSEVLQMEPDNVNALKDRAEAYLI 341
Score = 49.7 bits (119), Expect = 5e-08
Identities = 20/161 (12%), Positives = 42/161 (26%), Gaps = 57/161 (35%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVRNQEMNDMNRG 51
C G +++IS + KL +N + ++ +VR
Sbjct: 186 CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC-------- 237
Query: 52 DPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNA 111
L+LD K + K++ L +
Sbjct: 238 ---------------LKLDQDHKRCFA----------------HYKQVKKLNKLIESAEE 266
Query: 112 ALQANNFKEAIEAYSEAIKLDGTNH----ILFSNRSAAFAK 148
++ + +A Y +K + + F+K
Sbjct: 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK 307
Score = 47.8 bits (114), Expect = 2e-07
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ G L A +A+ + A+ D N+I + R+ F
Sbjct: 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLA 72
Score = 46.2 bits (110), Expect = 9e-07
Identities = 22/144 (15%), Positives = 42/144 (29%), Gaps = 26/144 (18%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE--MNDMNRGDPFANLFSDPN 62
L G+ E+ +++ LK +P+ + KEA + + ++
Sbjct: 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS----- 156
Query: 63 IFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAI 122
Y I + K L L + + ++ ++AI
Sbjct: 157 -----------------GDYTAAIAFLDK--ILEVCVWDAELRELRAECFIKEGEPRKAI 197
Query: 123 EAYSEAIKLDGTNHILFSNRSAAF 146
A KL N F S +
Sbjct: 198 SDLKAASKLKNDNTEAFYKISTLY 221
Score = 42.4 bits (100), Expect = 2e-05
Identities = 19/157 (12%), Positives = 46/157 (29%), Gaps = 50/157 (31%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNE--------------QMKEAIKDVRNQEMNDMNRG 51
+G+ K ++ + ++L + ++ EA D +
Sbjct: 69 VFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV-------- 120
Query: 52 DPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNA 111
L+ +P S + E+Q+ L+ +
Sbjct: 121 ---------------LKSNPSENEEKEAQSQLIKSDEMQR-------------LRSQALN 152
Query: 112 ALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
A + ++ AI + +++ + L R+ F K
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIK 189
Score = 38.5 bits (90), Expect = 3e-04
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 33/139 (23%)
Query: 10 LGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQL 69
GRY ++ S YE +K +P+ + K+ + F + +
Sbjct: 270 DGRYTDATSKYESVMKTEPSIAEYTVRSKE---------RIC----------HCFSKDEK 310
Query: 70 DPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAI 129
S + +Q +P + A LKD+ A L + EAI+ Y A
Sbjct: 311 PVEAIRVCS--------EVLQMEPDN--VNA----LKDRAEAYLIEEMYDEAIQDYETAQ 356
Query: 130 KLDGTNHILFSNRSAAFAK 148
+ + + + A
Sbjct: 357 EHNENDQQIREGLEKAQRL 375
Score = 32.3 bits (74), Expect = 0.043
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 14/48 (29%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 39
C S + E+I E L+++P+N E EAI+D
Sbjct: 304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD 351
Score = 32.3 bits (74), Expect = 0.043
Identities = 7/41 (17%), Positives = 12/41 (29%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ L K A+ ++ I+L R K
Sbjct: 66 RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106
Score = 31.2 bits (71), Expect = 0.11
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 43
Y E+I YE + + N++Q++E ++ +
Sbjct: 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 51.7 bits (124), Expect = 1e-08
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
LKDKGN + + +AI+ Y+ A++L + + +SN SA +
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVS 51
Score = 40.5 bits (95), Expect = 8e-05
Identities = 23/169 (13%), Positives = 52/169 (30%), Gaps = 24/169 (14%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVRNQEMND---- 47
C +G K+ + + L+L P+ + +A+ D+ +N
Sbjct: 48 CYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFND 107
Query: 48 ------MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAK 101
+ R + F + T LS + + + PS+ ++ +
Sbjct: 108 ASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167
Query: 102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI 150
+ K + A + + E + L + + +F KA
Sbjct: 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216
Score = 39.7 bits (93), Expect = 1e-04
Identities = 23/159 (14%), Positives = 51/159 (32%), Gaps = 31/159 (19%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVRNQEMNDMNR 50
++ E + +++ LKLD NN + +A KD + +++
Sbjct: 278 LIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKD--FDKAKELDP 335
Query: 51 GDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGN 110
+ F + + + S + +K P +
Sbjct: 336 ENIFP-YIQLACLAYRENKFDDCETLFS--------EAKRKFPE------APEVPNFFAE 380
Query: 111 AALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA 149
N+F +A++ Y AI+L+ ++ + KA
Sbjct: 381 ILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA 419
Score = 39.0 bits (91), Expect = 3e-04
Identities = 17/165 (10%), Positives = 40/165 (24%), Gaps = 23/165 (13%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
+ + KE + + + + + + F +F F
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178
Query: 66 QLQLDPRTKPFLSD-----------------PSYVQMIKEIQKDPSLMTLEAKIS----- 103
L + S+ + + ++ + K+
Sbjct: 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238
Query: 104 LLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
L+ G N+ A E +AI+L + + A
Sbjct: 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYI-YMALIMAD 282
Score = 35.5 bits (82), Expect = 0.004
Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 30/144 (20%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
L+ + +++ Y+ ++L+ + + + +
Sbjct: 381 ILTDKNDFDKALKQYDLAIELENKLDGIY-------------VGIA----------PLVG 417
Query: 66 QLQLDPRTKPFLSDPSYVQMIKE-IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEA 124
+ L R + ++++ + DP +AKI L LQ + EAI
Sbjct: 418 KATLLTRNPTVENFIEATNLLEKASKLDPRSE--QAKIGL----AQMKLQQEDIDEAITL 471
Query: 125 YSEAIKLDGTNHILFSNRSAAFAK 148
+ E+ L T + A A
Sbjct: 472 FEESADLARTMEEKLQAITFAEAA 495
Score = 33.9 bits (78), Expect = 0.013
Identities = 6/41 (14%), Positives = 17/41 (41%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ + K+ +E ++A++L + R++A
Sbjct: 45 LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85
Score = 31.6 bits (72), Expect = 0.081
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
N+ E + +A+KLD N ++ +R
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316
Score = 26.2 bits (58), Expect = 4.5
Identities = 6/47 (12%), Positives = 15/47 (31%), Gaps = 13/47 (27%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNE-------------QMKEAIKD 39
+Y ++I Y L+L + +K+ ++
Sbjct: 15 QFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEM 61
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 50.7 bits (122), Expect = 2e-08
Identities = 21/151 (13%), Positives = 47/151 (31%), Gaps = 37/151 (24%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
LG ++ S+S E LKLD ++++ K V+ + +
Sbjct: 197 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN-KLIESAEELIRD-------- 247
Query: 66 QLQLDPRTKPFLSDPSYVQMIKE--------IQKDPSLMTLEAKISLLKDKGNAALQANN 117
+ ++ +PS+ + + + +
Sbjct: 248 ------------------GRYTDATSKYESVMKTEPSVAEYTVR--SKERICHCFSKDEK 287
Query: 118 FKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
EAI SE ++++ N +R+ A+
Sbjct: 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318
Score = 50.3 bits (121), Expect = 2e-08
Identities = 20/161 (12%), Positives = 41/161 (25%), Gaps = 57/161 (35%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVRNQEMNDMNRG 51
C G +++IS + KL +N + ++ +VR
Sbjct: 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRE--------- 213
Query: 52 DPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNA 111
L+LD K + K++ L +
Sbjct: 214 ---C-----------LKLDQDHKRCFA----------------HYKQVKKLNKLIESAEE 243
Query: 112 ALQANNFKEAIEAYSEAIKLD----GTNHILFSNRSAAFAK 148
++ + +A Y +K + F+K
Sbjct: 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSK 284
Score = 46.5 bits (111), Expect = 6e-07
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ G L A +A+ + A+ D N+I + R+ F
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLA 49
Score = 45.7 bits (109), Expect = 9e-07
Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 22/144 (15%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
L G+ E+ +++ LK +P+ ++ KEA + + R
Sbjct: 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD--------- 129
Query: 65 VQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEA 124
Y I + K L L + + ++ ++AI
Sbjct: 130 -----------AFDGADYTAAITFLDK--ILEVCVWDAELRELRAECFIKEGEPRKAISD 176
Query: 125 YSEAIKLDGTNHILFSNRSAAFAK 148
A KL N F S + +
Sbjct: 177 LKAASKLKSDNTEAFYKISTLYYQ 200
Score = 41.1 bits (97), Expect = 4e-05
Identities = 20/158 (12%), Positives = 46/158 (29%), Gaps = 52/158 (32%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNE--------------QMKEAIKDVRNQEMNDMNRG 51
+G+ K ++ + + L + ++ EA D
Sbjct: 46 VFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDD------------ 93
Query: 52 DPFANLFSDPNIFVQ-LQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGN 110
F + L+ +P + S + E+Q+ L+ +
Sbjct: 94 ------------FKKVLKSNPSEQEEKEAESQLVKADEMQR-------------LRSQAL 128
Query: 111 AALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
A ++ AI + +++ + L R+ F K
Sbjct: 129 DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIK 166
Score = 40.7 bits (96), Expect = 5e-05
Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 33/139 (23%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQ 66
L GRY ++ S YE +K +P+ + K + F +
Sbjct: 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVRSK---------ERIC----------HCFSK 284
Query: 67 LQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYS 126
+ S + +Q +P + A LKD+ A L + EAI+ Y
Sbjct: 285 DEKPVEAIRICS--------EVLQMEPDN--VNA----LKDRAEAYLIEEMYDEAIQDYE 330
Query: 127 EAIKLDGTNHILFSNRSAA 145
A + + + + A
Sbjct: 331 AAQEHNENDQQIREGLEKA 349
Score = 34.2 bits (79), Expect = 0.010
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 14/48 (29%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 39
C S + E+I E L+++P+N E EAI+D
Sbjct: 281 CFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD 328
Score = 33.4 bits (77), Expect = 0.019
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV 40
Y E+I YE + + N++Q++E ++
Sbjct: 315 AYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349
Score = 33.0 bits (76), Expect = 0.023
Identities = 7/41 (17%), Positives = 11/41 (26%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ L K A+ ++ I L R K
Sbjct: 43 RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 50.2 bits (120), Expect = 3e-08
Identities = 19/144 (13%), Positives = 51/144 (35%), Gaps = 6/144 (4%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV---RNQEMNDMNRGDPFANLFSDPN 62
+ L + + Y+E L +D + + + E D+ ++ +
Sbjct: 209 VYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDA 268
Query: 63 IFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAI 122
F++ + S ++ ++ S+ LE LL K + + F + +
Sbjct: 269 AFLRSLYMLKLN-KTSHEDELRRAEDYLS--SINGLEKSSDLLLCKADTLFVRSRFIDVL 325
Query: 123 EAYSEAIKLDGTNHILFSNRSAAF 146
++ +++D N ++ A+
Sbjct: 326 AITTKILEIDPYNLDVYPLHLASL 349
Score = 34.8 bits (80), Expect = 0.006
Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 21/148 (14%)
Query: 10 LGRYKESISTYEEGLKLDPNNE-------------QMKEAIKDVRNQEMNDMNRGDPFAN 56
+YK + E+ L + N A + +++ + + +
Sbjct: 97 QQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLA 156
Query: 57 ---LFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAAL 113
L + L L T PF D K + +D + LEA + L+ G
Sbjct: 157 AFCLVKLYDWQGALNLLGETNPFRKDEKN--ANKLLMQDGGI-KLEASMCYLR--GQVYT 211
Query: 114 QANNFKEAIEAYSEAIKLDGTNHILFSN 141
+NF A E Y EA+ +D + F
Sbjct: 212 NLSNFDRAKECYKEALMVDAKCYEAFDQ 239
Score = 33.3 bits (76), Expect = 0.022
Identities = 16/144 (11%), Positives = 38/144 (26%), Gaps = 30/144 (20%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
+ +I+ ++ L L + ++ N G + +
Sbjct: 483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA------NLG----------HAY 526
Query: 65 VQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEA 124
+L++ Y I + + L T +A + L AI
Sbjct: 527 RKLKM------------YDAAIDALNQGLLLSTNDANV--HTAIALVYLHKKIPGLAITH 572
Query: 125 YSEAIKLDGTNHILFSNRSAAFAK 148
E++ + + A +
Sbjct: 573 LHESLAISPNEIMASDLLKRALEE 596
Score = 32.9 bits (75), Expect = 0.031
Identities = 7/41 (17%), Positives = 12/41 (29%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G +Q N A E + L + +L +
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN 487
Score = 29.4 bits (66), Expect = 0.45
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF 146
G A ++ + AI + A+ L +A +
Sbjct: 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519
Score = 29.4 bits (66), Expect = 0.48
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G L N EA +S++ +D + + +FA
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAI 419
Score = 28.7 bits (64), Expect = 0.77
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
++ +AI AY+ A +L H+ + +
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ 453
Score = 26.7 bits (59), Expect = 3.3
Identities = 3/28 (10%), Positives = 7/28 (25%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNNEQ 32
+ L G + + + P
Sbjct: 347 ASLHESGEKNKLYLISNDLVDRHPEKAV 374
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 49.7 bits (119), Expect = 6e-08
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 87 KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF 146
+ PS A LK++GN A NF EAI+ Y AI+LD + +SN SA +
Sbjct: 12 QLKGLSPSQRQAYAVQ--LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACY 69
Query: 147 AK 148
Sbjct: 70 IS 71
Score = 38.9 bits (91), Expect = 3e-04
Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 29/142 (20%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
L+ G + +I Y+ +L+ E++ + G L I
Sbjct: 387 ILTDRGDFDTAIKQYDIAKRLEEVQEKIH-------------VGIG----PLIGKATILA 429
Query: 66 QLQLDPRTKPFLSDPSYVQMIKEIQK----DPSLMTLEAKISLLKDKGNAALQANNFKEA 121
+ T+ + IK + K DP +AKI L LQ EA
Sbjct: 430 RQSSQDPTQLDEEK--FNAAIKLLTKACELDPRSE--QAKIGL----AQLKLQMEKIDEA 481
Query: 122 IEAYSEAIKLDGTNHILFSNRS 143
IE + ++ L T +
Sbjct: 482 IELFEDSAILARTMDEKLQATT 503
Score = 35.5 bits (82), Expect = 0.004
Identities = 16/188 (8%), Positives = 38/188 (20%), Gaps = 45/188 (23%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKD------------ 39
C G ++ I + L++ P++ +A+ D
Sbjct: 68 CYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDG 127
Query: 40 -----VRNQEMNDMNRGDPFANLFSDPNIFVQL--------------QLDPRTKPFLSDP 80
+ + +N NL D Q+ +
Sbjct: 128 ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSS 187
Query: 81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFS 140
+Y + + L + + + A + L +
Sbjct: 188 NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALC 247
Query: 141 NRSAAFAK 148
Sbjct: 248 YTGIFHFL 255
Score = 34.7 bits (80), Expect = 0.007
Identities = 21/158 (13%), Positives = 41/158 (25%), Gaps = 51/158 (32%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVRNQEMNDMNRG 51
L G++ ES + + E P AIK
Sbjct: 353 LLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ------------ 400
Query: 52 DPFANLFSDPNIFVQ-LQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGN 110
+ +L+ + +V + I K L ++ D+
Sbjct: 401 ------------YDIAKRLEEV-----QEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443
Query: 111 AALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
F AI+ ++A +LD + + +
Sbjct: 444 -------FNAAIKLLTKACELDPRSEQAKIGLAQLKLQ 474
Score = 34.3 bits (79), Expect = 0.010
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA 149
+F AI+ Y A +L+ + KA
Sbjct: 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA 425
Score = 33.2 bits (76), Expect = 0.024
Identities = 5/41 (12%), Positives = 14/41 (34%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
N +E + + +A+ L+ + +R +
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI 322
Score = 33.2 bits (76), Expect = 0.024
Identities = 4/41 (9%), Positives = 11/41 (26%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ F E+ ++E T + + +
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD 390
Score = 33.2 bits (76), Expect = 0.024
Identities = 19/144 (13%), Positives = 33/144 (22%), Gaps = 18/144 (12%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNNEQMK--EAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
L ++ L++ N A + + + D +
Sbjct: 161 LPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLV------- 213
Query: 65 VQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEA 124
S Y ++ D L A L G NN +A
Sbjct: 214 ------ANDLLTKSTDMYHSLLSANTVDDPLRENAALA--LCYTGIFHFLKNNLLDAQVL 265
Query: 125 YSEAIKLDGTNHILFSNRSAAFAK 148
E+I L + + A
Sbjct: 266 LQESINLH-PTPNSYIFLALTLAD 288
Score = 32.0 bits (73), Expect = 0.067
Identities = 5/41 (12%), Positives = 17/41 (41%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ + ++ IE ++A+++ + R++A
Sbjct: 65 ISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105
Score = 30.8 bits (70), Expect = 0.14
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+G ++K A E + +A L+ N + + K
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK 356
Score = 30.1 bits (68), Expect = 0.26
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 14/49 (28%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 39
L+ +E +++ + L+P + K A +D
Sbjct: 284 LTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332
Score = 28.1 bits (63), Expect = 1.3
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNNEQ 32
++ +I + +LDP +EQ
Sbjct: 436 PTQLDEEKFNAAIKLLTKACELDPRSEQ 463
Score = 27.4 bits (61), Expect = 2.2
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
+ E+I Y+ ++LDPN
Sbjct: 34 HFFTAKNFNEAIKYYQYAIELDPNE 58
Score = 26.2 bits (58), Expect = 5.2
Identities = 3/26 (11%), Positives = 7/26 (26%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNE 31
++ +E + L P
Sbjct: 252 FHFLKNNLLDAQVLLQESINLHPTPN 277
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 41.6 bits (98), Expect = 3e-05
Identities = 15/143 (10%), Positives = 46/143 (32%), Gaps = 20/143 (13%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
+ +++ + L+ P + + G L ++
Sbjct: 141 SFTNESLQRQACEILRDWLRYTPAYAH----LVTPAEEGAGGAGLGPSKRIL---GSLLS 193
Query: 66 QLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAY 125
+ FL ++ DP+ + + + L G + + +A++ +
Sbjct: 194 DSLFLEVKELFL---------AAVRLDPTSIDPDVQCGL----GVLFNLSGEYDKAVDCF 240
Query: 126 SEAIKLDGTNHILFSNRSAAFAK 148
+ A+ + +++L++ A A
Sbjct: 241 TAALSVRPNDYLLWNKLGATLAN 263
Score = 33.9 bits (78), Expect = 0.012
Identities = 7/41 (17%), Positives = 12/41 (29%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G + AI A ++L N + +F
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 144
Score = 32.3 bits (74), Expect = 0.037
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+G LQ + A+ + A++ D + + A+
Sbjct: 70 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE 110
Score = 30.0 bits (68), Expect = 0.27
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA 149
G + + +EA+E + EA+ + + A
Sbjct: 291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332
Score = 29.6 bits (67), Expect = 0.33
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQ 32
LG ++E++ + E L + +
Sbjct: 294 SCINLGAHREAVEHFLEALNMQRKSRG 320
Score = 26.9 bits (60), Expect = 2.7
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN 30
L+ + +E+++ Y L+L P
Sbjct: 261 LANGNQSEEAVAAYRRALELQPGY 284
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 40.7 bits (96), Expect = 5e-05
Identities = 23/164 (14%), Positives = 44/164 (26%), Gaps = 34/164 (20%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVR-------NQE 44
G + +I E+ ++ + ++ +A N
Sbjct: 117 YFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY 176
Query: 45 MNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISL 104
+ + R A DP TK L+ P Y ++I E+ + I
Sbjct: 177 IGYLWRARANAA------------QDPDTKQGLAKPYYEKLI-EVCAPGGAKYKDELIEA 223
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ + +A A+ + LD TN
Sbjct: 224 NEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267
Score = 37.3 bits (87), Expect = 0.001
Identities = 7/41 (17%), Positives = 20/41 (48%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ + NN+ EAIE +++ + +++ R+ + +
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE 49
Score = 34.9 bits (81), Expect = 0.005
Identities = 22/166 (13%), Positives = 44/166 (26%), Gaps = 48/166 (28%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVRN----QEMND- 47
L Y E+I + + N+ + A KD+
Sbjct: 13 LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA 72
Query: 48 -----MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKI 102
G I ++ D + Q + +D + ++
Sbjct: 73 KSADFEYYG----------KILMKKGQD--------SLAIQQYQAAVDRDTT------RL 108
Query: 103 SLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ G+ NF AI+ + I+ T+ +F A+
Sbjct: 109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY 154
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 40.8 bits (96), Expect = 6e-05
Identities = 23/159 (14%), Positives = 55/159 (34%), Gaps = 23/159 (14%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVRNQEMNDMNRG 51
+ + +I + L+L PNN ++A + ++N +
Sbjct: 108 TQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYK 167
Query: 52 DPFANLFSDPNIFVQLQLDPRTKPFLSD--PSYVQMIKEIQKDPSLMTLEAKISLLKDKG 109
N P + ++ P L Y++ ++ ++ + + L G
Sbjct: 168 YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA---AHQNGDMIDPDLQTGL----G 220
Query: 110 NAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ F AI+A++ A+ + ++ L++ A A
Sbjct: 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN 259
Score = 33.1 bits (76), Expect = 0.026
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G + N + AI A ++L N + ++
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145
Score = 32.3 bits (74), Expect = 0.046
Identities = 8/63 (12%), Positives = 17/63 (26%), Gaps = 2/63 (3%)
Query: 86 IKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAA 145
K + + ++G L+ + I AI D + +
Sbjct: 51 EKGYYFHTENPFKDWPGAF--EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGIT 108
Query: 146 FAK 148
A+
Sbjct: 109 QAE 111
Score = 30.4 bits (69), Expect = 0.18
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQ--------MKEAIKDVRNQEMNDMNRGDPF-AN 56
LG Y+E++S + L L + + I ++ M++ + F A
Sbjct: 290 SCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAA 349
Query: 57 LFSDPNIFVQ-LQLDP 71
D ++ ++ LDP
Sbjct: 350 NLGDLDVLLRAFNLDP 365
Score = 28.5 bits (64), Expect = 0.79
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI 150
G + + ++EA+ + A+ L + A + I
Sbjct: 287 LGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNI 329
Score = 27.3 bits (61), Expect = 2.1
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN 30
L+ R +E++ Y L++ P
Sbjct: 257 LANGDRSEEAVEAYTRALEIQPGF 280
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 40.6 bits (95), Expect = 7e-05
Identities = 19/138 (13%), Positives = 32/138 (23%), Gaps = 37/138 (26%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
+G + GL L P + + + V R A L
Sbjct: 31 DAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV----RWTQQRHAEAAVLLQ----- 81
Query: 65 VQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEA 124
+ P + L G+A A + A A
Sbjct: 82 ----------------------QASDAAPEH--PGIALWL----GHALEDAGQAEAAAAA 113
Query: 125 YSEAIKLDGTNHILFSNR 142
Y+ A +L + +
Sbjct: 114 YTRAHQLLPEEPYITAQL 131
Score = 32.1 bits (73), Expect = 0.057
Identities = 4/34 (11%), Positives = 9/34 (26%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNR 142
+A L + A + L + +
Sbjct: 30 ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Score = 28.3 bits (63), Expect = 0.99
Identities = 2/35 (5%), Positives = 10/35 (28%)
Query: 115 ANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA 149
+ + A++ + + + + A
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGM 36
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 40.3 bits (94), Expect = 9e-05
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 18/77 (23%)
Query: 90 QKDPSLMTLEAKISL---LKDKGNAALQANNFKEAIEAYSEAI---------------KL 131
K+ M E K+ +K++G + +K+A+ Y + + K
Sbjct: 132 AKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA 191
Query: 132 DGTNHILFSNRSAAFAK 148
N + K
Sbjct: 192 QALRLASHLNLAMCHLK 208
Score = 32.2 bits (73), Expect = 0.054
Identities = 6/38 (15%), Positives = 19/38 (50%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 43
+ ++ + + +++ L+L PNN+ K + + +
Sbjct: 239 AHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276
Score = 27.9 bits (62), Expect = 1.4
Identities = 10/55 (18%), Positives = 25/55 (45%)
Query: 81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN 135
S+++ + + +++ + L+ F AIE+ ++A++LD N
Sbjct: 175 SWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN 229
Score = 26.0 bits (57), Expect = 6.0
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNH 136
+G A L N+F+ A + + ++L N
Sbjct: 236 RGEAHLAVNDFELARADFQKVLQLYPNNK 264
Score = 25.6 bits (56), Expect = 7.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNE 31
C L + +I + + L+LD NNE
Sbjct: 205 CHLKLQAFSAAIESCNKALELDSNNE 230
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 39.4 bits (92), Expect = 1e-04
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 19/81 (23%)
Query: 87 KEIQKDPSLMTLEAKISL---LKDKGNAALQANNFKEAIEAYSEAIKLDGTNH------- 136
+ +K T E K+ +K++GN + N EAI Y EA+
Sbjct: 20 QGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQIL 79
Query: 137 ---------ILFSNRSAAFAK 148
N + + K
Sbjct: 80 LDKKKNIEISCNLNLATCYNK 100
Score = 32.8 bits (75), Expect = 0.025
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGD--PFANLFSD 60
Y G +E+ + L+PNN ++ + + ++ + + D F +F
Sbjct: 131 ANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV-NKLKEARKKDKLTFGGMFDK 186
Score = 26.7 bits (59), Expect = 2.6
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 99 EAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN 135
+IS + + ++ +AI+ S+ +K+D N
Sbjct: 85 NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN 121
Score = 25.1 bits (55), Expect = 8.7
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNH 136
G A + +EA E +A L+ N
Sbjct: 128 LGVANMYFGFLEEAKENLYKAASLNPNNL 156
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 38.9 bits (91), Expect = 1e-04
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 21/74 (28%)
Query: 96 MTLEAKISL---LKDKGNAALQANNFKEAIEAYSEAI------------------KLDGT 134
+ K+ L+ KGN ++KEAI+AY +A+ +LD
Sbjct: 2 NAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK 61
Query: 135 NHILFSNRSAAFAK 148
N L++N S +
Sbjct: 62 NIPLYANMSQCYLN 75
Score = 29.3 bits (66), Expect = 0.28
Identities = 4/55 (7%), Positives = 15/55 (27%), Gaps = 2/55 (3%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGD--PFANLF 58
+ E+ + L+ P + + + + ++ +F
Sbjct: 106 ARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMF 160
Score = 25.0 bits (55), Expect = 9.0
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTN 135
+ A + A EA E ++
Sbjct: 103 RAKARIAAWKLDEAEEDLKLLLRNHPAA 130
Score = 25.0 bits (55), Expect = 9.7
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 111 AALQANNFKEAIEAYSEAIKLDGTN 135
L + EA E SE +K + TN
Sbjct: 72 CYLNIGDLHEAEETSSEVLKREETN 96
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 4e-04
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 19/99 (19%)
Query: 12 RYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMND-MNRGDP-------FANLFSDPN 62
+YK+ +S +E+ + + + +++ K + +E++ + D F L S
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 63 ----IFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMT 97
FV+ L FL P IK Q+ PS+MT
Sbjct: 77 EMVQKFVEEVLRI-NYKFLMSP-----IKTEQRQPSMMT 109
Score = 35.6 bits (81), Expect = 0.004
Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 31/136 (22%)
Query: 4 YSCLSYLGRYKESISTYEE-----GLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLF 58
Y S++G + ++I E + LD + K +R+ G N
Sbjct: 472 YFY-SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK-----IRHDSTAWNASG-SILNTL 524
Query: 59 SDPNIFVQLQLDPRTKPFL--SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKG--NAALQ 114
+ KP++ +DP Y +++ I L +E + K AL
Sbjct: 525 QQLKFY---------KPYICDNDPKYERLVNAILD--FLPKIEENLICSKYTDLLRIALM 573
Query: 115 ANNFKEAIEAYSEAIK 130
A + EAI + EA K
Sbjct: 574 AED--EAI--FEEAHK 585
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 37.5 bits (88), Expect = 8e-04
Identities = 7/44 (15%), Positives = 14/44 (31%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
L + Q + + AIK + +SN + +
Sbjct: 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE 79
Score = 34.8 bits (81), Expect = 0.006
Identities = 6/42 (14%), Positives = 16/42 (38%)
Query: 107 DKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ + QA +F+ A + + + N + S+ +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ 45
Score = 34.1 bits (79), Expect = 0.010
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
GN + +EAIE Y A++L + N +AA
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVA 113
Score = 33.7 bits (78), Expect = 0.014
Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 39/144 (27%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
L LGR +E+ + Y + ++ PN + N G +F
Sbjct: 144 LLKALGRLEEAKACYLKAIETQPNFA-------VAWS------NLG----------CVFN 180
Query: 66 QL-QLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEA 124
++ L+ + K + DP+ L+A I+L GN +A F A+ A
Sbjct: 181 AQGEIW------LAIHHF---EKAVTLDPNF--LDAYINL----GNVLKEARIFDRAVAA 225
Query: 125 YSEAIKLDGTNHILFSNRSAAFAK 148
Y A+ L + ++ N + + +
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYE 249
Score = 33.3 bits (77), Expect = 0.020
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
NA + + EA + Y+ A++L T+ +N + +
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317
Score = 32.9 bits (76), Expect = 0.025
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
A + A + + A++AY A++ + + + S+
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA 147
Score = 32.5 bits (75), Expect = 0.034
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
GN +EA Y +AI+ + +SN F
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Score = 32.1 bits (74), Expect = 0.045
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ Q +EA+ Y EAI++ T +SN +
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
Score = 31.7 bits (73), Expect = 0.059
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ AI+ Y AI+L + N + A +
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283
Score = 31.7 bits (73), Expect = 0.069
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
N + N +EA+ Y +A+++ SN ++ +
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351
Score = 31.4 bits (72), Expect = 0.086
Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 39/144 (27%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
L G + ++ Y L+ +P+ VR+ + G N+
Sbjct: 110 ALVAAGDMEGAVQAYVSALQYNPDLY-------CVRS------DLG----------NLLK 146
Query: 66 QL-QLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEA 124
L +L+ + Y++ I+ P+ A +L G AI
Sbjct: 147 ALGRLE------EAKACYLKAIE---TQPNF--AVAWSNL----GCVFNAQGEIWLAIHH 191
Query: 125 YSEAIKLDGTNHILFSNRSAAFAK 148
+ +A+ LD + N +
Sbjct: 192 FEKAVTLDPNFLDAYINLGNVLKE 215
Score = 30.6 bits (70), Expect = 0.14
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNN 30
S L G+ +E++ Y+E +++ P
Sbjct: 347 SVLQQQGKLQEALMHYKEAIRISPTF 372
Score = 30.6 bits (70), Expect = 0.18
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNN 30
G +I TY ++L P+
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHF 270
Score = 29.4 bits (67), Expect = 0.45
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
L G E+ Y L+L P +
Sbjct: 280 ALKEKGSVAEAEDCYNTALRLCPTH 304
Score = 29.4 bits (67), Expect = 0.46
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
G +E++ Y + L++ P
Sbjct: 314 IKREQGNIEEAVRLYRKALEVFPEF 338
Score = 27.9 bits (63), Expect = 1.4
Identities = 4/25 (16%), Positives = 6/25 (24%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
R S +K +P
Sbjct: 42 IHFQCRRLDRSAHFSTLAIKQNPLL 66
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 36.9 bits (86), Expect = 0.001
Identities = 14/141 (9%), Positives = 37/141 (26%), Gaps = 22/141 (15%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
+ + +I LDP + N +
Sbjct: 64 TQAENEKDGLAIIALNHARMLDPKDI---AVH----------AALAVSHTNEHNANAALA 110
Query: 66 QLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAY 125
L+ LS P Y ++ ++ ++ + N ++E
Sbjct: 111 SLR-----AWLLSQPQYE----QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLL 161
Query: 126 SEAIKLDGTNHILFSNRSAAF 146
A++++ + L ++ +
Sbjct: 162 HAALEMNPNDAQLHASLGVLY 182
Score = 36.9 bits (86), Expect = 0.001
Identities = 21/145 (14%), Positives = 41/145 (28%), Gaps = 26/145 (17%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQM--KEAIKDVRNQEMNDMNRGDPFANLFSDPNI 63
+ ++++ L P EQ+ DV ++N + FA
Sbjct: 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA------- 150
Query: 64 FVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIE 123
+ ++ D + SL G +NN+ A
Sbjct: 151 --PNEYRECRT------LLHAALEMNPNDA-----QLHASL----GVLYNLSNNYDSAAA 193
Query: 124 AYSEAIKLDGTNHILFSNRSAAFAK 148
A++L + L++ A A
Sbjct: 194 NLRRAVELRPDDAQLWNKLGATLAN 218
Score = 33.0 bits (76), Expect = 0.023
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G + AI A + A LD + + + + +
Sbjct: 61 LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101
Score = 32.3 bits (74), Expect = 0.050
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+G + L+ N EA A+ + + + A+
Sbjct: 27 EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAE 67
Score = 31.1 bits (71), Expect = 0.12
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 8/55 (14%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN--------EQMKEAIKDVRNQEMNDMNRGD 52
S + +Y + + + + ++ D +N MNR D
Sbjct: 249 SYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303
Score = 29.6 bits (67), Expect = 0.31
Identities = 4/43 (9%), Positives = 12/43 (27%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI 150
+ + + A + AI + S +++
Sbjct: 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM 288
Score = 29.2 bits (66), Expect = 0.54
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G N +EA++AY+ A+ ++ + N + +++
Sbjct: 212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN 252
Score = 28.0 bits (63), Expect = 1.2
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN 30
L+ R +E++ Y L ++P
Sbjct: 216 LANGNRPQEALDAYNRALDINPGY 239
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 35.5 bits (83), Expect = 0.001
Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 35/131 (26%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
G Y ESI +E+ ++LDP + + +G
Sbjct: 15 LQYDAGNYTESIDLFEKAIQLDPEES---KYW----------LMKG----------KALY 51
Query: 66 QLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAY 125
L+ + + Y +I + +D + K +A + E
Sbjct: 52 NLE-----RYEEAVDCYNYVI-NVIEDEY------NKDVWAAKADALRYIEGKEVEAEIA 99
Query: 126 SEAIKLDGTNH 136
KL+ +H
Sbjct: 100 EARAKLEHHHH 110
Score = 35.1 bits (82), Expect = 0.002
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+G A N+ E+I+ + +AI+LD + + A
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN 52
Score = 29.3 bits (67), Expect = 0.22
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKL--DGTNHILFSNRSAAFAK 148
KG A ++EA++ Y+ I + D N +++ ++ A
Sbjct: 46 KGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 36.3 bits (84), Expect = 0.002
Identities = 14/145 (9%), Positives = 43/145 (29%), Gaps = 27/145 (18%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNNEQM---KEAIKDVRNQEMNDMNRGDPFANLFSDPNI 63
G+ +++S + + + L+ + +M K+ + +
Sbjct: 14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKA 73
Query: 64 FVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIE 123
++ + + +QK P+ + L+ + K+A+
Sbjct: 74 YLFYK------------------ELLQKAPN------NVDCLEACAEMQVCRGQEKDALR 109
Query: 124 AYSEAIKLDGTNHILFSNRSAAFAK 148
Y + ++L+ N +
Sbjct: 110 MYEKILQLEADNLAANIFLGNYYYL 134
Score = 32.8 bits (75), Expect = 0.021
Identities = 18/141 (12%), Positives = 38/141 (26%), Gaps = 30/141 (21%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVRNQEMNDMNRG 51
Y ++ Y+E L+ PNN Q K+A++ + +
Sbjct: 63 AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122
Query: 52 DPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNA 111
L + L + K K++ + G +
Sbjct: 123 AANIFL----GNYYYLTAEQEKK------KLETDYKKLSSPTKM------QYARYRDGLS 166
Query: 112 ALQANNFKEAIEAYSEAIKLD 132
L +++A + + I
Sbjct: 167 KLFTTRYEKARNSLQKVILRF 187
Score = 32.4 bits (74), Expect = 0.036
Identities = 8/43 (18%), Positives = 19/43 (44%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI 150
K +AA++A +A+ + + I L+ ++ + I
Sbjct: 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEI 52
Score = 31.3 bits (71), Expect = 0.086
Identities = 5/29 (17%), Positives = 15/29 (51%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMK 34
+ RY+++ ++ ++ + P+ E K
Sbjct: 166 SKLFTTRYEKARNSLQKVILRFPSTEAQK 194
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 36.1 bits (84), Expect = 0.002
Identities = 7/60 (11%), Positives = 17/60 (28%)
Query: 87 KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF 146
E S+ L+ + ++ +FK + S ++ D +
Sbjct: 7 SETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL 66
Score = 34.2 bits (79), Expect = 0.008
Identities = 19/159 (11%), Positives = 55/159 (34%), Gaps = 26/159 (16%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVRNQEMNDMNRG 51
+ + ++++ Y +L K A + + +
Sbjct: 134 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS--QALSIAPE 191
Query: 52 DPFA--NLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKG 109
DPF + + Q + ++ ++ +++I+ + +T++ LL + G
Sbjct: 192 DPFVMHEV---GVVAFQNG-----EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243
Query: 110 NAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ + + EA++ + +A+ L N +S +
Sbjct: 244 HVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSL 282
Score = 32.3 bits (74), Expect = 0.046
Identities = 19/161 (11%), Positives = 45/161 (27%), Gaps = 40/161 (24%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVRNQEMNDMNRGD 52
Y +K ++ DP + + E + ++ D+ +
Sbjct: 32 HYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYL--SHKLVDLYPSN 89
Query: 53 PFA-----NLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKD 107
P + + + + +LS K + + A I+
Sbjct: 90 PVSWFAVGCYYLM-----VGHKNEHARRYLS--------KATTLEKTY--GPAWIAY--- 131
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G++ + +A+ AY A +L H+ +
Sbjct: 132 -GHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL 171
Score = 30.3 bits (69), Expect = 0.21
Identities = 18/143 (12%), Positives = 40/143 (27%), Gaps = 28/143 (19%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
G +K + + + L+ E D +N N G ++
Sbjct: 202 VAFQNGEWKTAEKWFLDALEKIKAIG--NEVTVDKWEPLLN--NLG----------HVCR 247
Query: 66 QLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAY 125
+L+ Y + + ++ L+ A G NF+ A++ +
Sbjct: 248 KLK------------KYAEALDYHRQALVLIPQNASTYSA--IGYIHSLMGNFENAVDYF 293
Query: 126 SEAIKLDGTNHILFSNRSAAFAK 148
A+ L + +
Sbjct: 294 HTALGLRRDDTFSVTMLGHCIEM 316
Score = 27.3 bits (61), Expect = 2.4
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNNEQ 32
L L + E + + L P+N
Sbjct: 64 GTLVELNKANELFYLSHKLVDLYPSNPV 91
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 35.0 bits (81), Expect = 0.005
Identities = 18/155 (11%), Positives = 36/155 (23%), Gaps = 25/155 (16%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDP---N 62
L Y GR K + + DPN+ + L
Sbjct: 120 ALYYGGRDKLAQDDLLAFYQDDPNDPF-------------RSLWLYLAEQKLDEKQAKEV 166
Query: 63 IFVQLQLDPRTKPFLSDPSYV-QMIKEIQK-DPSLMTLEAKISLLKD-------KGNAAL 113
+ + + + + + I E + SL + G L
Sbjct: 167 LKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYL 226
Query: 114 QANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ A + A+ + N + +
Sbjct: 227 SLGDLDSATALFKLAVANNVHNFVEHRYALLELSL 261
Score = 33.4 bits (77), Expect = 0.014
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G QA NF A EA+ ++LD T + NR A
Sbjct: 83 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 123
Score = 30.0 bits (68), Expect = 0.26
Identities = 5/41 (12%), Positives = 13/41 (31%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+G A +S+A+ + +F+ +
Sbjct: 49 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ 89
Score = 27.7 bits (62), Expect = 1.3
Identities = 7/41 (17%), Positives = 11/41 (26%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+G A K A + + D + A K
Sbjct: 117 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK 157
Score = 27.3 bits (61), Expect = 2.3
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
LG + + + + L + P+
Sbjct: 52 LYDSLGLRALARNDFSQALAIRPDM 76
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 34.8 bits (79), Expect = 0.007
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
N + N +EA+ Y +A+++ SN ++ +
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 55
Score = 34.0 bits (77), Expect = 0.015
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ Q +EA+ Y EAI++ T +SN +
Sbjct: 50 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 89
Score = 29.0 bits (64), Expect = 0.67
Identities = 18/143 (12%), Positives = 42/143 (29%), Gaps = 37/143 (25%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
L G+ +E++ Y+E +++ P + +M ++
Sbjct: 52 VLQQQGKLQEALMHYKEAIRISPTFADA----YSNMGNTLKEMQDVQGALQCYTR----- 102
Query: 66 QLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAY 125
+Q++P ++ + + + N EAI +Y
Sbjct: 103 AIQINPA-----FADAHSNL-----------------------ASIHKDSGNIPEAIASY 134
Query: 126 SEAIKLDGTNHILFSNRSAAFAK 148
A+KL + N +
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQI 157
Score = 28.2 bits (62), Expect = 1.2
Identities = 8/42 (19%), Positives = 20/42 (47%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA 149
GN + + + A++ Y+ AI+++ SN ++ +
Sbjct: 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 124
Score = 26.7 bits (58), Expect = 4.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNN 30
S G E+I++Y LKL P+
Sbjct: 119 SIHKDSGNIPEAIASYRTALKLKPDF 144
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 33.2 bits (76), Expect = 0.011
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNN 30
S LG Y+++ + G+K PN+
Sbjct: 35 STFRTLGEYRKAEAVLANGVKQFPNH 60
Score = 30.8 bits (70), Expect = 0.068
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKE 35
L LGRY++ + + + ++E ++
Sbjct: 70 VLYNLGRYEQGVELLLKIIAETSDDETIQS 99
Score = 27.4 bits (61), Expect = 1.3
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 80 PSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILF 139
P Y + I + L E + L G+ +++A + +K + L
Sbjct: 11 PYYEKAIASGLQGKDL--AECYLGL----GSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 140 SNRSAA 145
+
Sbjct: 65 VFYAMV 70
Score = 26.6 bits (59), Expect = 2.1
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 10 LGRYKESISTYEEGLKLDPNNEQMKEA 36
LG +++ YE+ + + + E
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAEC 29
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 34.0 bits (78), Expect = 0.012
Identities = 12/164 (7%), Positives = 30/164 (18%), Gaps = 45/164 (27%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVR-------NQE 44
L + + + L P E ++ + + Q
Sbjct: 81 GKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQV 140
Query: 45 MNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISL 104
+ + L P Q P ++
Sbjct: 141 VAIASHDGGKQAL---------------ETVQALLPVLCQ---AHGLTP------EQVVA 176
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ G + + +A L + ++
Sbjct: 177 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQA 220
Score = 33.2 bits (76), Expect = 0.022
Identities = 16/164 (9%), Positives = 33/164 (20%), Gaps = 45/164 (27%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVR-------NQE 44
L + + + L P E ++ + + Q
Sbjct: 115 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQV 174
Query: 45 MNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISL 104
+ + G L + VQ L + P V I
Sbjct: 175 VAIASNGGGKQALET-----VQRLLPVLCQAHGLTPQQVVAIAS---------------- 213
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G + + +A L + ++
Sbjct: 214 ---NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQA 254
Score = 32.8 bits (75), Expect = 0.029
Identities = 12/143 (8%), Positives = 24/143 (16%), Gaps = 37/143 (25%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
L + + + L P AI + G L
Sbjct: 285 GKQALETVQRLLPVLCQAHGLTPQQV---VAI----------ASNGGGKQAL-------- 323
Query: 66 QLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAY 125
P Q P + + + +
Sbjct: 324 -------ETVQRLLPVLCQ---AHGLTPQQ------VVAIASHDGGKQALETVQRLLPVL 367
Query: 126 SEAIKLDGTNHILFSNRSAAFAK 148
+A L + ++
Sbjct: 368 CQAHGLTPEQVVAIASNGGGKQA 390
Score = 32.4 bits (74), Expect = 0.040
Identities = 14/143 (9%), Positives = 27/143 (18%), Gaps = 37/143 (25%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
L + + + L P AI + L + V
Sbjct: 319 GKQALETVQRLLPVLCQAHGLTPQQV---VAI----------ASHDGGKQALET-----V 360
Query: 66 QLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAY 125
Q L + P V + G + +
Sbjct: 361 QRLLPVLCQAHGLTPEQVV-------------------AIASNGGGKQALETVQRLLPVL 401
Query: 126 SEAIKLDGTNHILFSNRSAAFAK 148
+A L + ++
Sbjct: 402 CQAHGLTPEQVVAIASHDGGKQA 424
Score = 32.0 bits (73), Expect = 0.059
Identities = 12/164 (7%), Positives = 30/164 (18%), Gaps = 45/164 (27%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVR-------NQE 44
L + + + L P E ++ + + Q
Sbjct: 217 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 276
Query: 45 MNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISL 104
+ + L P Q P ++
Sbjct: 277 VAIASNSGGKQAL---------------ETVQRLLPVLCQ---AHGLTP------QQVVA 312
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ G + + +A L + ++
Sbjct: 313 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQA 356
Score = 31.6 bits (72), Expect = 0.077
Identities = 11/143 (7%), Positives = 25/143 (17%), Gaps = 37/143 (25%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
L + + + L P AI + G L
Sbjct: 353 GKQALETVQRLLPVLCQAHGLTPEQV---VAIA----------SNGGGKQAL-------- 391
Query: 66 QLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAY 125
P + P ++ + + +
Sbjct: 392 -------ETVQRLLPVL---CQAHGLTP------EQVVAIASHDGGKQALETVQRLLPVL 435
Query: 126 SEAIKLDGTNHILFSNRSAAFAK 148
+A L + ++
Sbjct: 436 CQAHGLTPQQVVAIASNGGGRPA 458
Score = 29.7 bits (67), Expect = 0.39
Identities = 2/41 (4%), Positives = 8/41 (19%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ + +A L + ++
Sbjct: 78 HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQA 118
Score = 29.3 bits (66), Expect = 0.47
Identities = 14/133 (10%), Positives = 27/133 (20%), Gaps = 37/133 (27%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
L + + + L P AI + L + V
Sbjct: 387 GKQALETVQRLLPVLCQAHGLTPEQV---VAI----------ASHDGGKQALET-----V 428
Query: 66 QLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAY 125
Q L + P V + G + +
Sbjct: 429 QRLLPVLCQAHGLTPQQVV-------------------AIASNGGGRPALESIVAQLSRP 469
Query: 126 SEAIKLDGTNHIL 138
A+ +H++
Sbjct: 470 DPALAALTNDHLV 482
Score = 27.8 bits (62), Expect = 1.6
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 7/43 (16%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQM-------KEAIKDVR 41
L +S + L N+ + + A+ V+
Sbjct: 455 GRPALESIVAQLSRPDPALAALTNDHLVALACLGGRPALDAVK 497
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 33.6 bits (78), Expect = 0.013
Identities = 7/40 (17%), Positives = 21/40 (52%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ ++++A EA+++AI+ + + I + N + +
Sbjct: 30 MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSS 69
Score = 31.7 bits (73), Expect = 0.055
Identities = 7/41 (17%), Positives = 13/41 (31%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G EA+ ++ + D + F N +A
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY 205
Score = 30.9 bits (71), Expect = 0.12
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
GN + +KEA + + +A++ N LF K
Sbjct: 97 AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK 137
Score = 30.6 bits (70), Expect = 0.13
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
N N + A+ Y +A++LD + + +
Sbjct: 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV 103
Score = 30.2 bits (69), Expect = 0.19
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 14/48 (29%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 39
CL+ G E++S + + DP + E ++A++
Sbjct: 168 CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215
Score = 30.2 bits (69), Expect = 0.20
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G ++ K A+ A++L+ + A
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171
Score = 29.8 bits (68), Expect = 0.23
Identities = 2/27 (7%), Positives = 13/27 (48%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQ 32
+Y ++++ ++ + + P++
Sbjct: 202 TYAYKENREKALEMLDKAIDIQPDHML 228
Score = 29.8 bits (68), Expect = 0.24
Identities = 6/41 (14%), Positives = 14/41 (34%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G N ++A+E +AI + + + +
Sbjct: 199 AGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239
Score = 29.4 bits (67), Expect = 0.35
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
LS + + +++ Y++ L+LD +
Sbjct: 66 LLSSVNELERALAFYDKALELDSSA 90
Score = 29.4 bits (67), Expect = 0.37
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 14/47 (29%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 39
YKE+ +E+ L+ N EQ K A+
Sbjct: 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPY 147
Score = 28.2 bits (64), Expect = 0.91
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN 30
L L + K ++ + ++L+ N+
Sbjct: 135 LVKLEQPKLALPYLQRAVELNEND 158
Score = 26.7 bits (60), Expect = 3.3
Identities = 2/21 (9%), Positives = 11/21 (52%)
Query: 10 LGRYKESISTYEEGLKLDPNN 30
G Y+++ + + ++ + +
Sbjct: 36 FGDYEKAAEAFTKAIEENKED 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 33.4 bits (77), Expect = 0.013
Identities = 5/39 (12%), Positives = 10/39 (25%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF 146
KG + + F A ++ F +
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTK 157
Score = 29.2 bits (66), Expect = 0.37
Identities = 6/40 (15%), Positives = 19/40 (47%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
++ ++++A + +A+K D N + + R+ +
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQY 54
Score = 28.4 bits (64), Expect = 0.86
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
C + G++ + + + L P
Sbjct: 122 CSAKQGQFGLAEAYLKRSLAAQPQF 146
Score = 26.1 bits (58), Expect = 4.9
Identities = 4/38 (10%), Positives = 13/38 (34%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF 146
+A E++ +A+ + + + +N
Sbjct: 49 AEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 33.2 bits (76), Expect = 0.020
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G N EA +A++ +I D + + R + +
Sbjct: 43 IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83
Score = 30.1 bits (68), Expect = 0.19
Identities = 5/41 (12%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMK--EAIKDVRNQE 44
+ +K++ + K +A++ V Q+
Sbjct: 130 MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQK 170
Score = 28.5 bits (64), Expect = 0.73
Identities = 17/141 (12%), Positives = 36/141 (25%), Gaps = 49/141 (34%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVRNQEMNDMNRG 51
+ L E+ + + D + E+ AIKD++
Sbjct: 46 MYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE--------- 96
Query: 52 DPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNA 111
A + N + Y + + + L E +
Sbjct: 97 ---ALIQLRGNQLI---------------DYKILGLQFK----LFACEVLY----NIAFM 130
Query: 112 ALQANNFKEAIEAYSEAIKLD 132
+ +K+A E + A +
Sbjct: 131 YAKKEEWKKAEEQLALATSMK 151
Score = 28.5 bits (64), Expect = 0.78
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNR 142
+G Q + AI+ EA+ N ++
Sbjct: 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI 111
Score = 27.0 bits (60), Expect = 2.6
Identities = 7/42 (16%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 107 DKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
++G A ++K A++A+S + + + N +
Sbjct: 11 NEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTI 49
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 32.9 bits (76), Expect = 0.024
Identities = 5/41 (12%), Positives = 12/41 (29%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G + A+ + A+K + + + K
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLK 51
Score = 31.7 bits (73), Expect = 0.049
Identities = 5/42 (11%), Positives = 10/42 (23%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA 149
L+ A+E + + S A+
Sbjct: 45 LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVAL 86
Score = 30.6 bits (70), Expect = 0.13
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
L EA+ Y++A++ + L ++A
Sbjct: 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLL 197
Score = 29.0 bits (66), Expect = 0.45
Identities = 9/128 (7%), Positives = 26/128 (20%), Gaps = 30/128 (23%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQ 66
LG ++ + + P + + L+ +
Sbjct: 49 QLKLGLVNPALENGKTLVARTPRYL-------GGYM------VLSEAYVALYRQAEDRER 95
Query: 67 LQLDPRTKPFLSD--PSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEA 124
+ L + + + G +A +
Sbjct: 96 GKGY------LEQALSVLKDAE-RVNPRYA----PLHLQR----GLVYALLGERDKAEAS 140
Query: 125 YSEAIKLD 132
+A+ L+
Sbjct: 141 LKQALALE 148
Score = 28.7 bits (65), Expect = 0.53
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNNE 31
+ LG ++ ++ ++ L L+ E
Sbjct: 128 YALLGERDKAEASLKQALALEDTPE 152
Score = 28.7 bits (65), Expect = 0.56
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN 30
L LGRY +++ +E LK +P +
Sbjct: 15 LYALGRYDAALTLFERALKENPQD 38
Score = 27.9 bits (63), Expect = 0.97
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN 30
+GR E+++ Y + L+ P +
Sbjct: 161 YLSMGRLDEALAQYAKALEQAPKD 184
Score = 27.9 bits (63), Expect = 0.99
Identities = 6/45 (13%), Positives = 16/45 (35%)
Query: 104 LLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
L + + ++A+ +A +++ L R +A
Sbjct: 86 LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL 130
Score = 27.1 bits (61), Expect = 1.9
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLD 132
+A L +EA A +
Sbjct: 191 YASALLLKGKAEEAARAAALEHHHH 215
Score = 27.1 bits (61), Expect = 2.3
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPN 29
S L G+ +E+ +
Sbjct: 193 SALLLKGKAEEAARAAALEHHHHHH 217
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 32.0 bits (73), Expect = 0.029
Identities = 9/44 (20%), Positives = 14/44 (31%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
L G QA + +A + + LD + F A
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS 64
Score = 30.1 bits (68), Expect = 0.16
Identities = 5/40 (12%), Positives = 15/40 (37%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G +++A+++YS +D + + +
Sbjct: 59 GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98
Score = 28.9 bits (65), Expect = 0.33
Identities = 5/28 (17%), Positives = 7/28 (25%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTN 135
LQ + A + A L
Sbjct: 92 AAECHLQLGDLDGAESGFYSARALAAAQ 119
Score = 28.9 bits (65), Expect = 0.39
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNN 30
+C LG Y++++ +Y G +D N
Sbjct: 60 ACRQSLGLYEQALQSYSYGALMDINE 85
Score = 27.8 bits (62), Expect = 0.90
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 10/48 (20%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN----------EQMKEAIKDVRNQ 43
C LG + S + L M EA+ +++
Sbjct: 95 CHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARKDR 142
Score = 26.6 bits (59), Expect = 2.6
Identities = 3/25 (12%), Positives = 10/25 (40%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
G++ ++ ++ LD +
Sbjct: 27 NQYQAGKWDDAQKIFQALCMLDHYD 51
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 32.5 bits (74), Expect = 0.029
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA 149
G L N++ ++ AY +A++L G N L++ +
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ 91
Score = 31.0 bits (70), Expect = 0.080
Identities = 19/130 (14%), Positives = 36/130 (27%), Gaps = 34/130 (26%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
+ Y S+ Y + L+L N ++ A+ V + + A +
Sbjct: 53 YYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK------ 106
Query: 66 QLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAY 125
L LD L + A N+ +AIE +
Sbjct: 107 ALALDSNEITALML----------------------------LASDAFMQANYAQAIELW 138
Query: 126 SEAIKLDGTN 135
+ + L+
Sbjct: 139 QKVMDLNSPR 148
Score = 26.4 bits (58), Expect = 3.9
Identities = 3/29 (10%), Positives = 13/29 (44%)
Query: 10 LGRYKESISTYEEGLKLDPNNEQMKEAIK 38
Y ++I +++ + L+ + ++
Sbjct: 128 QANYAQAIELWQKVMDLNSPRINRTQLVE 156
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 32.6 bits (75), Expect = 0.030
Identities = 6/38 (15%), Positives = 16/38 (42%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF 146
G +LQ +A E + ++++L+ + +
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLL 185
Score = 28.8 bits (65), Expect = 0.55
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLD 132
G LQ N ++A +A+++D
Sbjct: 44 GLGYLQRGNTEQAKVPLRKALEID 67
Score = 28.0 bits (63), Expect = 1.2
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
+ + ++ +E+ L+L+ N
Sbjct: 150 VSLQMKKPAQAKEYFEKSLRLNRNQ 174
Score = 26.1 bits (58), Expect = 5.6
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTN 135
+ + + A + Y + G N
Sbjct: 182 ADLLYKEREYVPARQYYDLFAQGGGQN 208
Score = 25.3 bits (56), Expect = 7.7
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF 146
K A E Y +A+ D N + +N
Sbjct: 78 AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 33.1 bits (75), Expect = 0.032
Identities = 9/150 (6%), Positives = 27/150 (18%), Gaps = 31/150 (20%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVRNQEMNDMNRGD 52
L + + + L P+ E ++ + + +
Sbjct: 541 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVV 600
Query: 53 PFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAA 112
A+ P Q + +
Sbjct: 601 AIASN--------IGGKQALETVQRLLPVLCQAHGLTPAQ---------VVAIASHDGGK 643
Query: 113 LQANNFKEAIEAYSEAIKLDGTNHILFSNR 142
+ + +A L + ++
Sbjct: 644 QALETVQRLLPVLCQAHGLTPDQVVAIASN 673
Score = 32.3 bits (73), Expect = 0.054
Identities = 13/162 (8%), Positives = 34/162 (20%), Gaps = 45/162 (27%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVR-------NQEM 45
L + + + L P+ E ++ + + +Q +
Sbjct: 270 KQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVV 329
Query: 46 NDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLL 105
+ L P Q + D ++ +
Sbjct: 330 AIASHDGGKQAL---------------ETVQRLLPVLCQAH-GLTPD--------QVVAI 365
Query: 106 KDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA 147
G + + +A L + ++ A
Sbjct: 366 ASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQA 407
Score = 31.5 bits (71), Expect = 0.082
Identities = 12/161 (7%), Positives = 32/161 (19%), Gaps = 45/161 (27%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVR-------NQEM 45
L + + + L P+ E ++ + + +Q +
Sbjct: 236 KQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVV 295
Query: 46 NDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLL 105
+ G L P Q P ++ +
Sbjct: 296 AIASHGGGKQAL---------------ETVQRLLPVLCQ---AHGLTP------DQVVAI 331
Query: 106 KDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF 146
+ + +A L + ++
Sbjct: 332 ASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGK 372
Score = 30.8 bits (69), Expect = 0.16
Identities = 17/154 (11%), Positives = 35/154 (22%), Gaps = 32/154 (20%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
L + + + L P+ AI + G L + V
Sbjct: 337 GKQALETVQRLLPVLCQAHGLTPDQV---VAIA----------SNGGGKQALET-----V 378
Query: 66 QLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKD--------------KGNA 111
Q L + P V I +L T++ + +L
Sbjct: 379 QRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGG 438
Query: 112 ALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAA 145
+ + + L + ++
Sbjct: 439 KQALETVQRLLPVLCQTHGLTPAQVVAIASHDGG 472
Score = 28.8 bits (64), Expect = 0.73
Identities = 2/44 (4%), Positives = 9/44 (20%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ + + +A L + ++
Sbjct: 229 IASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQA 272
Score = 28.5 bits (63), Expect = 0.99
Identities = 15/163 (9%), Positives = 32/163 (19%), Gaps = 45/163 (27%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVR-------NQEM 45
L + + + L P E M+ + + +Q +
Sbjct: 202 KQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVV 261
Query: 46 NDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLL 105
+ L VQ L + P V +
Sbjct: 262 AIASNIGGKQAL-----ETVQRLLPVLCQAHGLTPDQVV-------------------AI 297
Query: 106 KDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G + + +A L + ++
Sbjct: 298 ASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQA 340
Score = 28.5 bits (63), Expect = 1.1
Identities = 14/147 (9%), Positives = 32/147 (21%), Gaps = 14/147 (9%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQ 66
L + + + L P+ + + E P+ V
Sbjct: 372 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVA 431
Query: 67 LQLDPRTKPFLSD-----PSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEA 121
+ K L P Q P A++ + ++
Sbjct: 432 IASHDGGKQALETVQRLLPVLCQ---THGLTP------AQVVAIASHDGGKQALETVQQL 482
Query: 122 IEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ +A L + ++
Sbjct: 483 LPVLCQAHGLTPDQVVAIASNIGGKQA 509
Score = 28.1 bits (62), Expect = 1.4
Identities = 3/41 (7%), Positives = 10/41 (24%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAA 145
+ G + + +A L + ++
Sbjct: 534 IASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 574
Score = 28.1 bits (62), Expect = 1.5
Identities = 2/44 (4%), Positives = 9/44 (20%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ + + +A L + ++
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQA 238
Score = 27.3 bits (60), Expect = 2.2
Identities = 23/164 (14%), Positives = 48/164 (29%), Gaps = 28/164 (17%)
Query: 10 LGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVR-------NQEMNDM 48
L + + + L E ++ + + +Q +
Sbjct: 680 LETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 739
Query: 49 NRGDPFANLFSDP---NIFVQ-LQLDP-RTKPFLSDPSYVQMIKEIQKDPSLMTLEAKIS 103
+ G L + + Q L P + S+ Q ++ +Q+ L L
Sbjct: 740 SNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQR--LLPVLCQDHG 797
Query: 104 LLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA 147
L + A K+A+E + + H L ++ A A
Sbjct: 798 LTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIA 841
Score = 26.9 bits (59), Expect = 3.4
Identities = 3/41 (7%), Positives = 9/41 (21%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G + + +A L + ++
Sbjct: 571 NGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQA 611
Score = 26.5 bits (58), Expect = 4.2
Identities = 23/171 (13%), Positives = 44/171 (25%), Gaps = 34/171 (19%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVR-------NQE 44
L + + + L P+ E ++ + + Q
Sbjct: 710 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQV 769
Query: 45 MNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQK--------DPSLM 96
+ + L VQ L + + V I L
Sbjct: 770 VAIASNIGGKQAL-----ETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLP 824
Query: 97 TLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA 147
L L +D+ A K+A+E + + +H L ++ A A
Sbjct: 825 VLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIA 875
Score = 25.4 bits (55), Expect = 9.9
Identities = 11/139 (7%), Positives = 28/139 (20%), Gaps = 37/139 (26%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQ 66
L + + + L P+ AI + G L
Sbjct: 643 KQALETVQRLLPVLCQAHGLTPDQV---VAI----------ASNGGGKQAL--------- 680
Query: 67 LQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYS 126
P Q + ++ ++ + + +
Sbjct: 681 ------ETVQRLLPVLCQAH-GLTQE--------QVVAIASNNGGKQALETVQRLLPVLC 725
Query: 127 EAIKLDGTNHILFSNRSAA 145
+A L + ++
Sbjct: 726 QAHGLTPDQVVAIASNGGG 744
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 32.9 bits (75), Expect = 0.032
Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 3/113 (2%)
Query: 20 YEEGLKLDPNN-EQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS 78
Y+ + + E +K ++ Q D + ++ + + L K + +
Sbjct: 20 YKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLM--CFRHQLMLDYLEPGKTYGN 77
Query: 79 DPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKL 131
P+ ++++ I+ +T K L +G + EAI Y EA K
Sbjct: 78 RPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKE 130
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 31.7 bits (72), Expect = 0.036
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Query: 87 KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF 146
QK+P EA SL G + AI A + A LD + + + + +
Sbjct: 42 AVCQKEPERE--EAWRSL----GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95
Query: 147 AK 148
Sbjct: 96 TN 97
Score = 28.6 bits (64), Expect = 0.42
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+G + L+ N EA A+ + + + + A+
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE 63
Score = 27.4 bits (61), Expect = 1.2
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
+ + +I LDP +
Sbjct: 60 TQAENEKDGLAIIALNHARMLDPKD 84
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 32.6 bits (74), Expect = 0.038
Identities = 14/127 (11%), Positives = 35/127 (27%), Gaps = 18/127 (14%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
++I ++ L+ PNN + I ++ +
Sbjct: 256 FYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENG---------- 305
Query: 66 QLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAY 125
R L + + K + + +L L + A+ ++EA +
Sbjct: 306 --MYGKRKLLELIGHAVAHLKKADEANDNL--FRVCSIL----ASLHALADQYEEAEYYF 357
Query: 126 SEAIKLD 132
+ +
Sbjct: 358 QKEFSKE 364
Score = 31.1 bits (70), Expect = 0.11
Identities = 16/149 (10%), Positives = 45/149 (30%), Gaps = 35/149 (23%)
Query: 3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPN 62
L + +I + ++L+P+N+ +K + + +
Sbjct: 181 ASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK-------------VLLALKLHKMREEGE 227
Query: 63 IFVQLQLDPRTKPFLSDPSYVQMIKE-IQKDPSLMTLEAKISLLKDKGNAALQANNFKEA 121
+ ++++E ++K P +L+ + + +A
Sbjct: 228 EEGE---------------GEKLVEEALEKAPG------VTDVLRSAAKFYRRKDEPDKA 266
Query: 122 IEAYSEAIKLDGTNHILFSNRSAAFAKAI 150
IE +A++ N L + +
Sbjct: 267 IELLKKALEYIPNNAYLHCQIGCCYRAKV 295
Score = 29.5 bits (66), Expect = 0.37
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 82 YVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQA--NNFKEAIEAYSEAIKLDGTNHILF 139
YV +K + + S L ++G L+ N + A + +A++ N
Sbjct: 116 YVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT 175
Query: 140 SNRSAAF 146
S + A
Sbjct: 176 SGLAIAS 182
Score = 29.1 bits (65), Expect = 0.50
Identities = 15/133 (11%), Positives = 43/133 (32%), Gaps = 13/133 (9%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
S + +Y+E+ +++ + + N ++ M D + F +
Sbjct: 342 SLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE---- 397
Query: 65 VQLQLDPRTKPFLSDPSYVQMI--KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAI 122
++++ +++ +Q I + K+ + EA L ++A
Sbjct: 398 -GVKINQKSREKEKMKDKLQKIAKMRLSKNGAD--SEALHVL----AFLQELNEKMQQAD 450
Query: 123 EAYSEAIKLDGTN 135
E ++
Sbjct: 451 EDSERGLESGSLI 463
Score = 27.2 bits (60), Expect = 2.1
Identities = 15/138 (10%), Positives = 37/138 (26%), Gaps = 30/138 (21%)
Query: 11 GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLD 70
+ + + +E+ L+ P N E +L
Sbjct: 152 NQNERAKVCFEKALEKKPKNP---EFTS----------GLA----------IASYRLDNW 188
Query: 71 PRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIK 130
P S + + + I+ +P K+ L + E + EA++
Sbjct: 189 PP-----SQNAIDPLRQAIRLNPDN--QYLKVLLALKLHKMREEGEEEGEGEKLVEEALE 241
Query: 131 LDGTNHILFSNRSAAFAK 148
+ + + + +
Sbjct: 242 KAPGVTDVLRSAAKFYRR 259
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 32.0 bits (74), Expect = 0.038
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
KG + +A + +A+ + D + + + A+ K
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVK 54
Score = 30.1 bits (69), Expect = 0.17
Identities = 4/41 (9%), Positives = 12/41 (29%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G A ++ E ++ N + + + +
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88
Score = 29.7 bits (68), Expect = 0.24
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G A F EAI+++ A+ L + + ++ +
Sbjct: 116 LGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ 156
Score = 29.3 bits (67), Expect = 0.30
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
+GR++E++ +++ +LD
Sbjct: 153 SYEQMGRHEEALPHFKKANELDEGA 177
Score = 29.0 bits (66), Expect = 0.39
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
+ GRY +++ E+ D +
Sbjct: 17 SHAKAGRYSQAVMLLEQVYDADAFD 41
Score = 29.0 bits (66), Expect = 0.47
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN 30
L LGR+ E+I +++ L L PN
Sbjct: 120 LDNLGRFDEAIDSFKIALGLRPNE 143
Score = 29.0 bits (66), Expect = 0.50
Identities = 3/24 (12%), Positives = 10/24 (41%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN 30
+ +Y ++ + + +P N
Sbjct: 86 YVQVQKYDLAVPLLIKVAEANPIN 109
Score = 28.6 bits (65), Expect = 0.52
Identities = 5/41 (12%), Positives = 12/41 (29%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G +Q + A+ + + + N + A
Sbjct: 82 LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN 122
Score = 28.6 bits (65), Expect = 0.69
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLD 132
+ Q +EA+ + +A +LD
Sbjct: 150 IAFSYEQMGRHEEALPHFKKANELD 174
Score = 28.2 bits (64), Expect = 0.79
Identities = 5/24 (20%), Positives = 6/24 (25%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN 30
G E L P+N
Sbjct: 52 YVKTGAVDRGTELLERSLADAPDN 75
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 31.6 bits (73), Expect = 0.044
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
G Y E+I Y++ L+LDP +
Sbjct: 112 AYYKQGDYDEAIEYYQKALELDPRS 136
Score = 30.4 bits (70), Expect = 0.12
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
GNA + ++ EAIE Y +A++LD + + N A+ K
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 47
Score = 29.7 bits (68), Expect = 0.18
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
GNA + ++ EAIE Y +A++LD + + N A+ K
Sbjct: 41 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81
Score = 28.1 bits (64), Expect = 0.63
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLD 132
GNA + ++ EAIE Y +A++LD
Sbjct: 109 LGNAYYKQGDYDEAIEYYQKALELD 133
Score = 28.1 bits (64), Expect = 0.71
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
GNA + ++ EAIE Y +A++LD + + N A+ K
Sbjct: 75 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 115
Score = 27.4 bits (62), Expect = 1.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN 30
G Y E+I Y++ L+LDP +
Sbjct: 79 YYKQGDYDEAIEYYQKALELDPRS 102
Score = 26.6 bits (60), Expect = 2.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN 30
G Y E+I Y++ L+LDP +
Sbjct: 45 YYKQGDYDEAIEYYQKALELDPRS 68
Score = 26.6 bits (60), Expect = 2.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN 30
G Y E+I Y++ L+LDP +
Sbjct: 11 YYKQGDYDEAIEYYQKALELDPRS 34
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 30.4 bits (69), Expect = 0.078
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLD 132
GNA + ++++A+ Y AI+L+
Sbjct: 41 MGNAYRKLGDWQKALNNYQSAIELN 65
Score = 29.6 bits (67), Expect = 0.15
Identities = 5/43 (11%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 107 DKGNAALQANNFKEAIEAYSEAIKLDGTNH-ILFSNRSAAFAK 148
+ + + A++A E ++ + + A+ K
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK 47
Score = 28.5 bits (64), Expect = 0.34
Identities = 9/45 (20%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNE-----QMKEAIKDVRNQEM 45
LG ++++++ Y+ ++L+P++ +M I + N++M
Sbjct: 44 AYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILNFYNKDM 88
Score = 25.4 bits (56), Expect = 5.2
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 10 LGRYKESISTYEEGLKLDPNN 30
G + ++ EE L+ +P
Sbjct: 13 QGDIENALQALEEFLQTEPVG 33
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 31.2 bits (70), Expect = 0.11
Identities = 19/149 (12%), Positives = 36/149 (24%), Gaps = 20/149 (13%)
Query: 11 GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE-MNDMNRGDPFANLFSDPNIFVQLQL 69
+ E ++ P + V A L ++ + V L
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272
Query: 70 DP--------RTKPFLSDPSYVQMIKEIQK----DPSLMTLEAKISLLKDKGNAALQANN 117
+ L + + I + S + G
Sbjct: 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVL-------LGKVYEMKGM 325
Query: 118 FKEAIEAYSEAIKLDGTNHILFSNRSAAF 146
+EA +AY A L + L+ + F
Sbjct: 326 NREAADAYLTAFNLRPGANTLYWIENGIF 354
Score = 26.6 bits (58), Expect = 3.7
Identities = 3/34 (8%), Positives = 9/34 (26%)
Query: 114 QANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA 147
+ A E E ++ + ++
Sbjct: 211 DDKSLNRASELLGEIVQSSPEFTYARAEKALVDI 244
Score = 25.4 bits (55), Expect = 8.0
Identities = 5/26 (19%), Positives = 7/26 (26%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNNEQ 32
G +E+ Y L P
Sbjct: 320 YEMKGMNREAADAYLTAFNLRPGANT 345
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.11
Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 27/120 (22%)
Query: 21 EEGLKLDPNNEQMK-EAIKDVRNQEMNDMNRGDPFAN--LFSDPNIFVQLQLDPRTKP-- 75
E+G ++ N M E I D + + + + F L T+P
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK--GLLSATQFTQPAL 1736
Query: 76 FLSDPSYVQMIKE---IQKDP-----SL------------MTLEAKISLLKDKGNAALQA 115
L + + + +K I D SL M++E+ + ++ +G A
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796
Score = 28.9 bits (64), Expect = 0.85
Identities = 19/153 (12%), Positives = 43/153 (28%), Gaps = 61/153 (39%)
Query: 4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNI 63
Y+ L+ L + +S E +++ V RG +
Sbjct: 1767 YAALASLA---DVMSI-ESLVEV-------------VFY-------RG-----------M 1791
Query: 64 FVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLM-------TLEAKISLLKDKGNAALQAN 116
+Q PR + S+ MI +P + L+ + + + ++
Sbjct: 1792 TMQ-VAVPRDELGRSNYG---MIA---INPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 117 NF------------KEAIEAYSEAIKLDGTNHI 137
N+ A++ + + I
Sbjct: 1845 NYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.12
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 13/41 (31%)
Query: 87 KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSE 127
+ ++K L+A + L D AL AI+A E
Sbjct: 20 QALKK------LQASLKLYADDSAPAL-------AIKATME 47
Score = 27.2 bits (59), Expect = 1.9
Identities = 4/18 (22%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 14 KESISTYEEGLKL-DPNN 30
K+++ + LKL ++
Sbjct: 19 KQALKKLQASLKLYADDS 36
Score = 26.1 bits (56), Expect = 4.0
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 9/33 (27%)
Query: 119 KEAIEAYSEAIKLDGTNHILFSNRSA-AFA-KA 149
K+A++ ++K L+++ SA A A KA
Sbjct: 19 KQALKKLQASLK-------LYADDSAPALAIKA 44
Score = 24.9 bits (53), Expect = 9.3
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 12/35 (34%)
Query: 68 QLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKI 102
+L K + D + P+L ++A +
Sbjct: 24 KLQASLKLYADDSA-----------PAL-AIKATM 46
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 31.1 bits (70), Expect = 0.12
Identities = 19/145 (13%), Positives = 45/145 (31%), Gaps = 26/145 (17%)
Query: 4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNI 63
S + +S+ + +++D + + G+ + +L+ N
Sbjct: 186 DSGDEHSRHVMDSVRQAKLAVQMDVLDGR--SWY-----------ILGNAYLSLYF--NT 230
Query: 64 FVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIE 123
++ + + +Y Q K +K S L ++ ++ EA+E
Sbjct: 231 GQNPKISQQ-----ALSAYAQAEKVDRKASS------NPDLHLNRATLHKYEESYGEALE 279
Query: 124 AYSEAIKLDGTNHILFSNRSAAFAK 148
+S+A LD
Sbjct: 280 GFSQAAALDPAWPEPQQREQQLLEF 304
Score = 30.0 bits (67), Expect = 0.25
Identities = 24/149 (16%), Positives = 42/149 (28%), Gaps = 34/149 (22%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
G + + + L N ++ N +
Sbjct: 146 VYWKKGDVTSAHTCFSGALTHCKNKVSLQ--------------NLS----------MVLR 181
Query: 66 QLQLDPRTKPFLSDPSYVQMIKE-IQKDPSLMTLEA----KISLLKDKGNAALQANNFKE 120
QLQ D + V+ K +Q D + + L N ++
Sbjct: 182 QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD--GRSWYILGNAYLSLYFNTGQNPKISQQ 239
Query: 121 AIEAYSEAIKLDGT---NHILFSNRSAAF 146
A+ AY++A K+D N L NR+
Sbjct: 240 ALSAYAQAEKVDRKASSNPDLHLNRATLH 268
Score = 29.6 bits (66), Expect = 0.40
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G + + A +S A+ N + N S +
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGALTHC-KNKVSLQNLSMVLRQ 182
Score = 29.2 bits (65), Expect = 0.55
Identities = 5/65 (7%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 87 KEIQKDPSLMTLEAKISLLKD--KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSA 144
+ + ++L+ +L+ + + + +++ A+++D + +
Sbjct: 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGN 221
Query: 145 AFAKA 149
A+
Sbjct: 222 AYLSL 226
Score = 27.7 bits (61), Expect = 1.8
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 108 KGNAALQANNF-KEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
KG A ++ EA S+A+KL+ ++ + K
Sbjct: 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 30.3 bits (68), Expect = 0.13
Identities = 6/40 (15%), Positives = 12/40 (30%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
G + AI +YS +D + + +
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101
Score = 27.6 bits (61), Expect = 1.0
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNNEQM 33
+C +G+Y +I +Y G +D +
Sbjct: 63 ACRQAMGQYDLAIHSYSYGAVMDIXEPRF 91
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 29.7 bits (68), Expect = 0.18
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
GNA + ++ EAIE Y +A++LD N + N A+ K
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 55
Score = 28.5 bits (65), Expect = 0.39
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF 146
GNA + ++ EAIE Y +A++LD N + N A+
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87
Score = 28.5 bits (65), Expect = 0.48
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
GNA + ++ EAIE Y +A++LD N N A K
Sbjct: 83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123
Score = 27.4 bits (62), Expect = 0.98
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN 30
G Y E+I Y++ L+LDPNN
Sbjct: 87 YYKQGDYDEAIEYYQKALELDPNN 110
Score = 27.4 bits (62), Expect = 1.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN 30
G Y E+I Y++ L+LDPNN
Sbjct: 19 YYKQGDYDEAIEYYQKALELDPNN 42
Score = 26.6 bits (60), Expect = 2.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN 30
G Y E+I Y++ L+LDPNN
Sbjct: 53 YYKQGDYDEAIEYYQKALELDPNN 76
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 29.8 bits (67), Expect = 0.19
Identities = 5/40 (12%), Positives = 13/40 (32%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
F++A + Y+ A L ++ + +
Sbjct: 77 AAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116
Score = 29.4 bits (66), Expect = 0.29
Identities = 3/26 (11%), Positives = 10/26 (38%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNN 30
+ +++++ Y L N+
Sbjct: 78 AIYQIKEQFQQAADLYAVAFALGKND 103
Score = 27.4 bits (61), Expect = 1.2
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHI 137
G L+ +A E + I+ +
Sbjct: 110 TGQCQLRLKAPLKAKECFELVIQHSNDEKL 139
Score = 27.4 bits (61), Expect = 1.3
Identities = 4/31 (12%), Positives = 12/31 (38%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEA 36
C L ++ +E ++ + + +A
Sbjct: 113 CQLRLKAPLKAKECFELVIQHSNDEKLKIKA 143
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 29.6 bits (67), Expect = 0.19
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLD 132
G + F A+ A+ D
Sbjct: 26 GKTYAEHEQFDAALPHLRAALDFD 49
Score = 28.8 bits (65), Expect = 0.35
Identities = 5/45 (11%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN------EQMKEAIKDVRNQE 44
L G + +E GL + ++++ ++ + ++
Sbjct: 62 TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARED 106
Score = 28.5 bits (64), Expect = 0.51
Identities = 3/27 (11%), Positives = 8/27 (29%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTN 135
G + A +A+ + +
Sbjct: 60 GKTLQGQGDRAGARQAWESGLAAAQSR 86
Score = 26.9 bits (60), Expect = 1.7
Identities = 4/31 (12%), Positives = 9/31 (29%)
Query: 119 KEAIEAYSEAIKLDGTNHILFSNRSAAFAKA 149
+ E + N +L +A+
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEH 32
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 30.4 bits (68), Expect = 0.20
Identities = 9/50 (18%), Positives = 18/50 (36%)
Query: 82 YVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKL 131
+ + D ++ K GN+ + +EA++ Y AI
Sbjct: 159 DETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAY 208
Score = 29.6 bits (66), Expect = 0.34
Identities = 6/39 (15%), Positives = 19/39 (48%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 44
+ LG+ + + + K P+++ ++ ++ + QE
Sbjct: 273 AKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE 311
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 30.4 bits (68), Expect = 0.20
Identities = 11/56 (19%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRN--QEMNDMNRGDPFANLFS 59
+ ++ + +E+ L+++P N+ + I + +E N+ +R +AN+F
Sbjct: 360 AQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR-RIYANMFK 414
Score = 27.0 bits (59), Expect = 3.1
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKL 131
+K+KG + + +A+ Y + +
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSW 297
Score = 27.0 bits (59), Expect = 3.3
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNE 31
C L Y +++ ++ L LD NE
Sbjct: 326 CYLKLREYTKAVECCDKALGLDSANE 351
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 30.4 bits (68), Expect = 0.21
Identities = 4/42 (9%), Positives = 16/42 (38%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA 149
+ + + ++ + +K D N+ +++ R +
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT 247
Score = 25.8 bits (56), Expect = 6.1
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
+ + + ++ LK D N
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRN 233
Score = 25.8 bits (56), Expect = 6.6
Identities = 4/41 (9%), Positives = 15/41 (36%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
+ + + +E ++ + D N+ + +R +
Sbjct: 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 212
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 30.1 bits (68), Expect = 0.24
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 17/96 (17%)
Query: 70 DPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISL-LKDKGNAALQANNFKEAIEAYSEA 128
S S+ ++ D + IS LK+ GN ++ N++ AI+ Y++
Sbjct: 190 WGIFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKV 249
Query: 129 I----------------KLDGTNHILFSNRSAAFAK 148
+ KL N A K
Sbjct: 250 LRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK 285
Score = 27.8 bits (62), Expect = 1.4
Identities = 8/51 (15%), Positives = 24/51 (47%)
Query: 85 MIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN 135
+ +S + + G L+ ++++ A+++ EA+++D +N
Sbjct: 256 SRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN 306
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 28.5 bits (65), Expect = 0.31
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
GNA + ++ EAIE Y +A++LD N N A K
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89
Score = 28.5 bits (65), Expect = 0.35
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 108 KGNAALQANNFKEAIEAYSEAIKLD 132
GNA + ++ EAIE Y +A++LD
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELD 39
Score = 27.0 bits (61), Expect = 1.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN 30
G Y E+I Y++ L+LDPNN
Sbjct: 53 YYKQGDYDEAIEYYQKALELDPNN 76
Score = 26.2 bits (59), Expect = 2.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 7 LSYLGRYKESISTYEEGLKLDPNN 30
G Y E+I Y++ L+LDPNN
Sbjct: 19 YYKQGDYDEAIEYYQKALELDPNN 42
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 30.0 bits (68), Expect = 0.31
Identities = 5/38 (13%), Positives = 16/38 (42%)
Query: 99 EAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH 136
EA L +G ++ + + + + A+++ +
Sbjct: 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL 43
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 29.1 bits (64), Expect = 0.35
Identities = 6/53 (11%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANL 57
L+ L + E++ + ++ L ++ + + + +R L
Sbjct: 65 EALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVY--SRALALDGL 115
Score = 28.3 bits (62), Expect = 0.63
Identities = 16/125 (12%), Positives = 34/125 (27%), Gaps = 14/125 (11%)
Query: 11 GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLD 70
G Y E+ + +++ +EA + A L D
Sbjct: 25 GEYDEAAANCRRAMEISHTMPP-EEAFDHAGFDAFCHAGLAEALAGLR---------SFD 74
Query: 71 PRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIK 130
Y E+ +D + IS + + A EA+ + + ++
Sbjct: 75 EALHSADKALHYFNRRGELNQDEG----KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130
Query: 131 LDGTN 135
+
Sbjct: 131 MIEER 135
Score = 27.9 bits (61), Expect = 1.0
Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 12/61 (19%)
Query: 100 AKISLLKDKGNAALQANNFKEAIEAYSEAIKL------------DGTNHILFSNRSAAFA 147
L L A + EA A+++ G + + + A A
Sbjct: 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 68
Query: 148 K 148
Sbjct: 69 G 69
Score = 26.4 bits (57), Expect = 2.8
Identities = 5/27 (18%), Positives = 14/27 (51%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQ 32
L LGR E++ +++ +++ +
Sbjct: 111 ALDGLGRGAEAMPEFKKVVEMIEERKG 137
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 28.4 bits (64), Expect = 0.41
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLD 132
L+ +N A+ + E ++ D
Sbjct: 14 AQEHLKHDNASRALALFEELVETD 37
Score = 28.0 bits (63), Expect = 0.49
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
L R ++I TY +G+++
Sbjct: 50 LYERLDRTDDAIDTYAQGIEVAREE 74
Score = 27.2 bits (61), Expect = 1.0
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLD 132
G + + +AI+ Y++ I++
Sbjct: 48 GKLYERLDRTDDAIDTYAQGIEVA 71
Score = 24.9 bits (55), Expect = 6.2
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPN 29
+++ +EE ++ DP+
Sbjct: 16 EHLKHDNASRALALFEELVETDPD 39
>3mem_A Putative signal transduction protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-2; HET: MSE; 2.25A {Marinobacter
aquaeolei}
Length = 457
Score = 29.2 bits (65), Expect = 0.51
Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 12/75 (16%)
Query: 24 LKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQ---LDPRTKPFLSDP 80
+ +Q+ AIK + L P ++ ++P +
Sbjct: 153 DNHAADRDQLHSAIKRFTGLRIQQRLEDTL--ELPPLPETAQRIIHLRVNP-------NA 203
Query: 81 SYVQMIKEIQKDPSL 95
++ ++ DPSL
Sbjct: 204 VMGDLVDVVESDPSL 218
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 28.6 bits (64), Expect = 0.70
Identities = 16/101 (15%), Positives = 36/101 (35%)
Query: 31 EQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQ 90
E ++ IK +Q D + ++ + N+ ++ P ++ EI
Sbjct: 32 EYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEID 91
Query: 91 KDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKL 131
K + +T + +G L + AI+ + +A
Sbjct: 92 KKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESK 132
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 28.8 bits (65), Expect = 0.73
Identities = 7/54 (12%), Positives = 15/54 (27%), Gaps = 6/54 (11%)
Query: 83 VQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH 136
Q S+ L +G A + + + + AI+ +
Sbjct: 35 SQQGSGSDGGSSMCLE------LALEGERLCNAGDCRAGVAFFQAAIQAGTEDL 82
Score = 25.7 bits (57), Expect = 7.4
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 43
+ L +GR+ E+ E L + + D ++
Sbjct: 134 NTLKVMGRFDEAAICCERHL-------TLARQLGDRLSE 165
Score = 25.3 bits (56), Expect = 8.7
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 11/46 (23%)
Query: 2 TTYSCL----SYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 43
YS L YLG Y +++ ++ L + +++ D +
Sbjct: 87 AIYSQLGNAYFYLGDYNKAMQYHKHDL-------TLAKSMNDRLGE 125
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens}
SCOP: a.118.8.1
Length = 152
Score = 27.9 bits (62), Expect = 0.80
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 10/49 (20%)
Query: 6 CLSYL-------GRYKESISTYEEGLKLDPNNEQ---MKEAIKDVRNQE 44
+ YL Y++++ L+ +P N Q ++ I ++
Sbjct: 73 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 121
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
protein structure initiative, PSI, joint center for
structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
SCOP: a.24.13.1 c.37.1.10
Length = 306
Score = 28.3 bits (64), Expect = 0.97
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 110 NAALQANNFKEAIEAYSEAI-KLDGT 134
N +QA FKEA+ + KLDGT
Sbjct: 237 NGLVQAKIFKEAVNVTGIILTKLDGT 262
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 28.4 bits (64), Expect = 0.98
Identities = 3/32 (9%), Positives = 14/32 (43%)
Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNH 136
L +G ++ + + + + A+++ +
Sbjct: 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDL 39
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer,
nucleotide twinning, protein complex, protein transport;
HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1
c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D
2iyl_D* 2cnw_D* 2j7p_D*
Length = 304
Score = 28.3 bits (64), Expect = 1.1
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 110 NAALQANNFKEAIEAYSEAI-KLDGT 134
N QA F EA+ + KLDGT
Sbjct: 235 NGLEQAKKFHEAVGLTGVIVTKLDGT 260
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein
transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Length = 320
Score = 27.9 bits (63), Expect = 1.1
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 110 NAALQANNFKEAIEAYSEAI-KLDGT 134
N +QA F + + + K+D T
Sbjct: 242 NGVIQAEEFSKVADVSGIILTKMDST 267
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein
translocation, GTP-binding, nucleotide-binding, protein
transport; 1.75A {Arabidopsis thaliana}
Length = 302
Score = 27.9 bits (63), Expect = 1.1
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 110 NAALQANNFKEAIEAYSEAI-KLDGT 134
N QA F E + + KLDG+
Sbjct: 234 NMLPQAREFNEVVGITGLILTKLDGS 259
>2og2_A Putative signal recognition particle receptor; nucleotide-binding,
protein transport; 2.00A {Arabidopsis thaliana}
Length = 359
Score = 27.6 bits (62), Expect = 1.5
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 110 NAALQANNFKEAIEAYSEAI-KLDGT 134
N QA F E + + KLDG+
Sbjct: 291 NMLPQAREFNEVVGITGLILTKLDGS 316
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 27.7 bits (62), Expect = 1.5
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 109 GNAALQANNFKEAIEAYSEAIKLDG 133
G+A+LQ NFK AIEA++ A L+
Sbjct: 688 GDASLQRFNFKLAIEAFTNAHDLES 712
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum,
metal-binding, oxidoreductase; 2.03A {Homo sapiens}
PDB: 1tjc_A
Length = 104
Score = 26.5 bits (58), Expect = 1.9
Identities = 6/33 (18%), Positives = 17/33 (51%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIK 38
+ G +++ ++ L+LDP +++ +K
Sbjct: 55 AVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 144
Score = 26.8 bits (59), Expect = 2.1
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 10 LGRYKESISTYEEGLKLDPNNEQ---MKEAIKDVRNQE 44
LG Y + + + + NN+Q +K ++D +E
Sbjct: 90 LGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKE 127
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 26.8 bits (60), Expect = 2.9
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 89 IQKDPSLMTLEAKISLLKDKGNAAL-QANNFKEAIEAYSEAI-KLDGT 134
+ + + +A GNA + QA F EA++ + KLD
Sbjct: 240 TKPNLVIFVGDALA------GNAIVEQARQFNEAVKIDGIILTKLDAD 281
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function;
2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Length = 126
Score = 26.0 bits (57), Expect = 3.4
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 10/49 (20%)
Query: 6 CLSYL-------GRYKESISTYEEGLKLDPNNEQ---MKEAIKDVRNQE 44
+ YL Y++++ L+ +P N Q ++ I ++
Sbjct: 76 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 124
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR,
scaffold, peroxisome, membrane fission, protein binding;
1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A
3uux_A
Length = 134
Score = 26.0 bits (57), Expect = 3.8
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 10 LGRYKESISTYEEGLKLDPNNEQ---MKEAIKDVRNQEMN 46
LG Y + + + + NN+Q +K ++D +E N
Sbjct: 91 LGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKEEN 130
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 26.3 bits (58), Expect = 4.5
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 110 NAALQANNFKEAIEAYSEAI-KLDGT 134
NA QA F EA+ + KLDGT
Sbjct: 426 NAVSQAKLFHEAVGLTGITLTKLDGT 451
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G
protein, signaling protein regulation; NMR {Homo
sapiens} SCOP: a.91.1.1
Length = 152
Score = 25.8 bits (56), Expect = 4.8
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 26 LDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLD--PRTKPFLSDPSYV 83
+ + + VR M + I+ + D PR FLS P+Y
Sbjct: 80 VSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPR---FLSSPTYR 136
Query: 84 QMIKEIQKDPSLM 96
++ + SL+
Sbjct: 137 ALLPWVDSSSSLI 149
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between
N-terminal and C-TERM domain of kinase, cell
cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus
saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A*
1xo2_A* 1bu2_A
Length = 254
Score = 25.8 bits (57), Expect = 5.6
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 46 NDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQ 90
N +NR + DP + L+L P S ++ E+
Sbjct: 6 NRLNRAKIDSTTMKDPRVLNNLKLRELLLP--KFTSLWEIQTEVT 48
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.9 bits (56), Expect = 5.8
Identities = 4/26 (15%), Positives = 16/26 (61%)
Query: 25 KLDPNNEQMKEAIKDVRNQEMNDMNR 50
+LD ++ M++ ++ +++ + N+
Sbjct: 100 ELDAASKVMEQEWREKAKKDLEEWNQ 125
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.7.14.1
Length = 117
Score = 25.4 bits (55), Expect = 5.9
Identities = 4/26 (15%), Positives = 15/26 (57%)
Query: 13 YKESISTYEEGLKLDPNNEQMKEAIK 38
Y+ ++ + +K + ++ K++I+
Sbjct: 41 YQHAVQYFLHVVKYEAQGDKAKQSIR 66
>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2,
protein struct initiative; 2.48A {Mesorhizobium loti}
Length = 389
Score = 25.7 bits (57), Expect = 7.1
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 9 YLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 43
LG + + Y GL +++ +
Sbjct: 125 LLGSRRNRVKAYASGLDFHLDDDAFVSLFSHAASI 159
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat
motif, helis-turn-helix, cell cycle division, mitosis,
TPR repeat; 2.50A {Homo sapiens}
Length = 167
Score = 25.1 bits (54), Expect = 8.4
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 90 QKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKL 131
+P L + K LL ++ ++ A+ Y+ A++
Sbjct: 51 NNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 25.5 bits (55), Expect = 8.5
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 6 CLSYLGRYKESISTYEEGLKLDPNN 30
C GR++ + +E L D +
Sbjct: 209 CHMAQGRWEAAEGVLQEALDKDSGH 233
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.358
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,205,166
Number of extensions: 122262
Number of successful extensions: 1046
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1005
Number of HSP's successfully gapped: 636
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.1 bits)