BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3022
(258 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|31127054|gb|AAC03142.2| RNA polymerase II largest subunit [Triops longicaudatus]
Length = 543
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/127 (97%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|31127026|gb|AAF26640.2|AF138990_1 RNA polymerase II largest subunit [Machiloides banksi]
Length = 445
Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/127 (97%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|324120568|dbj|BAJ78675.1| RNA polymerase II largest subunit [Metylophorus sp. E-43]
Length = 1792
Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/126 (98%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN
Sbjct: 728 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 787
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 788 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 847
Query: 124 KTAETA 129
KTAET
Sbjct: 848 KTAETG 853
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/91 (96%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1074 AQVAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1133
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1134 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1164
>gi|324120510|dbj|BAJ78646.1| RNA polymerase II largest subunit [Pedetontus unimaculatus]
Length = 1549
Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/126 (98%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN
Sbjct: 707 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 766
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 767 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 826
Query: 124 KTAETA 129
KTAET
Sbjct: 827 KTAETG 832
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1053 AQVQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1112
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1113 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1143
>gi|324120512|dbj|BAJ78647.1| RNA polymerase II largest subunit [Petrobiellus takunagae]
Length = 1882
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 124/126 (98%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN
Sbjct: 707 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 766
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 767 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 826
Query: 124 KTAETA 129
KTAET
Sbjct: 827 KTAETG 832
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1053 AQVQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1112
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1113 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1143
>gi|324120530|dbj|BAJ78656.1| RNA polymerase II largest subunit [Aposthonia japonica]
Length = 1697
Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 124/126 (98%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN
Sbjct: 704 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 763
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 764 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 823
Query: 124 KTAETA 129
KTAET
Sbjct: 824 KTAETG 829
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK+PKAPS
Sbjct: 1050 AQCNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPS 1109
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1110 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1140
>gi|357628227|gb|EHJ77617.1| largest subunit of the RNA polymerase II complex [Danaus plexippus]
Length = 1895
Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN
Sbjct: 723 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 782
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 783 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 842
Query: 124 KTAETA 129
KTAET
Sbjct: 843 KTAETG 848
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1069 AQVNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1128
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1129 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1159
>gi|321464303|gb|EFX75312.1| hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex]
Length = 1895
Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN
Sbjct: 727 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 846
Query: 124 KTAETA 129
KTAET
Sbjct: 847 KTAETG 852
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/91 (94%), Positives = 87/91 (95%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK PKAPS
Sbjct: 1073 AQAQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKNPKAPS 1132
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1133 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1163
>gi|38232323|gb|AAR14997.1| RNA polymerase II largest subunit [Neogonodactylus oerstedii]
Length = 624
Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 123/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 371 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 430
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 431 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 490
Query: 123 VKTAETA 129
VKTAET
Sbjct: 491 VKTAETG 497
>gi|38232303|gb|AAR14987.1| RNA polymerase II largest subunit [Lynceus sp. JCR-2003]
Length = 445
Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 124/127 (97%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|31127040|gb|AAF26661.2|AF139011_1 RNA polymerase II largest subunit [Tomocerus sp. jcrjws1]
Length = 543
Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|324120514|dbj|BAJ78648.1| RNA polymerase II largest subunit [Nipponatelura sp. 66-1]
Length = 1718
Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 706 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 765
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 766 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 825
Query: 124 KTAETA 129
KTAET
Sbjct: 826 KTAETG 831
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1052 AQVQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1111
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1112 LTVFLTGVAARDAEKAKNVLCRLEHTTLRKV 1142
>gi|324120534|dbj|BAJ78658.1| RNA polymerase II largest subunit [Karoophasma biedouwense]
Length = 1907
Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 727 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 846
Query: 124 KTAETA 129
KTAET
Sbjct: 847 KTAETG 852
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/91 (96%), Positives = 90/91 (98%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C+PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1073 AQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1132
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1133 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1163
>gi|324120538|dbj|BAJ78660.1| RNA polymerase II largest subunit [Euconocephalus varius]
Length = 1640
Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 727 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 846
Query: 124 KTAETA 129
KTAET
Sbjct: 847 KTAETG 852
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/91 (96%), Positives = 90/91 (98%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C+PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1073 AQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1132
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1133 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1163
>gi|324120554|dbj|BAJ78668.1| RNA polymerase II largest subunit [Reticulitermes speratus]
Length = 1732
Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 726 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 785
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 786 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 845
Query: 124 KTAETA 129
KTAET
Sbjct: 846 KTAETG 851
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 86/91 (94%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ +PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK+PKAPS
Sbjct: 1072 AQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPS 1131
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1132 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1162
>gi|324120560|dbj|BAJ78671.1| RNA polymerase II largest subunit [Cryptotympana facialis]
Length = 1803
Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 726 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 785
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 786 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 845
Query: 124 KTAETA 129
KTAET
Sbjct: 846 KTAETG 851
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 88/91 (96%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1072 AQCQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1131
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1132 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1162
>gi|324120508|dbj|BAJ78645.1| RNA polymerase II largest subunit [Lepidocampa weberi]
Length = 1558
Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 726 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 785
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 786 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 845
Query: 124 KTAETA 129
KTAET
Sbjct: 846 KTAETG 851
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1072 AQVQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1131
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1132 LTVFLTGNAARDAEKAKNVLCRLEHTTLRKV 1162
>gi|194245532|gb|ACF35375.1| RNA polymerase II large subunit [Chauliognathus opacus]
Length = 629
Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 261 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 320
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 321 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 380
Query: 123 VKTAETA 129
VKTAET
Sbjct: 381 VKTAETG 387
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/22 (86%), Positives = 20/22 (90%)
Query: 132 AKCAPGEMVGALAAQSLGEPAT 153
A+ PGEMVGALAAQSLGEPAT
Sbjct: 608 AQANPGEMVGALAAQSLGEPAT 629
>gi|242011894|ref|XP_002426678.1| predicted protein [Pediculus humanus corporis]
gi|212510849|gb|EEB13940.1| predicted protein [Pediculus humanus corporis]
Length = 1885
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 718 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 777
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 778 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 837
Query: 124 KTAETA 129
KTAET
Sbjct: 838 KTAETG 843
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/91 (97%), Positives = 90/91 (98%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1064 AQCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1123
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1124 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1154
>gi|324120532|dbj|BAJ78657.1| RNA polymerase II largest subunit [Galloisiana yuasai]
Length = 1904
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 727 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 846
Query: 124 KTAETA 129
KTAET
Sbjct: 847 KTAETG 852
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ +PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1073 AQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1132
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1133 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1163
>gi|324120540|dbj|BAJ78661.1| RNA polymerase II largest subunit [Teleogryllus emma]
Length = 1909
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 728 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 787
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 788 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 847
Query: 124 KTAETA 129
KTAET
Sbjct: 848 KTAETG 853
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ +PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1074 AQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1133
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1134 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1164
>gi|324120548|dbj|BAJ78665.1| RNA polymerase II largest subunit [Zorotypus sp. 154-1]
Length = 1862
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/91 (96%), Positives = 90/91 (98%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C+PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|324120522|dbj|BAJ78652.1| RNA polymerase II largest subunit [Mnais pruinosa pruinosa]
Length = 1557
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 729 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 788
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 789 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 848
Query: 124 KTAETA 129
KTAET
Sbjct: 849 KTAETG 854
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 88/91 (96%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1076 AQCQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1135
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1136 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1166
>gi|324120524|dbj|BAJ78653.1| RNA polymerase II largest subunit [Ephemera japonica]
Length = 1660
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN
Sbjct: 730 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 789
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 790 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 849
Query: 124 KTAETA 129
KTAET
Sbjct: 850 KTAETG 855
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 88/91 (96%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1076 AQCQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1135
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1136 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1166
>gi|324120516|dbj|BAJ78649.1| RNA polymerase II largest subunit [Thermobia domestica]
Length = 1699
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 727 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 846
Query: 124 KTAETA 129
KTAET
Sbjct: 847 KTAETG 852
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK+PKAPS
Sbjct: 1073 AQCQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPS 1132
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1133 LTVFLTGVAARDAEKAKNVLCRLEHTTLRKV 1163
>gi|324120536|dbj|BAJ78659.1| RNA polymerase II largest subunit [Nomadacris japonica]
Length = 1659
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 727 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 846
Query: 124 KTAETA 129
KTAET
Sbjct: 847 KTAETG 852
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/91 (96%), Positives = 90/91 (98%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C+PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1073 AQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1132
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1133 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1163
>gi|324120550|dbj|BAJ78666.1| RNA polymerase II largest subunit [Tenodera aridifolia]
Length = 1844
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 727 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 846
Query: 124 KTAETA 129
KTAET
Sbjct: 847 KTAETG 852
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 90/91 (98%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C+PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1073 AQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1132
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTL+KV
Sbjct: 1133 LTVFLTGAAARDAEKAKNVLCRLEHTTLKKV 1163
>gi|31127050|gb|AAC03139.2| RNA polymerase II largest subunit [Periplaneta americana]
Length = 468
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 117 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 176
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 177 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 236
Query: 123 VKTAETA 129
VKTAET
Sbjct: 237 VKTAETG 243
>gi|324120552|dbj|BAJ78667.1| RNA polymerase II largest subunit [Blattella nipponica]
Length = 1598
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 727 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 846
Query: 124 KTAETA 129
KTAET
Sbjct: 847 KTAETG 852
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ +PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1073 AQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1132
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1133 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1163
>gi|324120518|dbj|BAJ78650.1| RNA polymerase II largest subunit [Isolepisma japonica]
Length = 1775
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 727 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 846
Query: 124 KTAETA 129
KTAET
Sbjct: 847 KTAETG 852
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/91 (94%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK+PKAPS
Sbjct: 1073 AQVQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPS 1132
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1133 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1163
>gi|324120576|dbj|BAJ78679.1| RNA polymerase II largest subunit [Inocellia japonica]
Length = 1913
Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN
Sbjct: 726 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 785
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 786 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 845
Query: 124 KTAETA 129
KTAET
Sbjct: 846 KTAETG 851
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/91 (97%), Positives = 90/91 (98%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1073 AQCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1132
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1133 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1163
>gi|31127010|gb|AAF26623.2|AF138973_1 RNA polymerase II largest subunit [Ctenolepisma lineata]
Length = 624
Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 123/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 371 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 430
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 431 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 490
Query: 123 VKTAETA 129
VKTAET
Sbjct: 491 VKTAETG 497
>gi|324120520|dbj|BAJ78651.1| RNA polymerase II largest subunit [Epiophlebia superstes]
Length = 1922
Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 708 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 767
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 768 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 827
Query: 124 KTAETA 129
KTAET
Sbjct: 828 KTAETG 833
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 88/91 (96%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1055 AQCQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1114
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1115 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1145
>gi|219879763|gb|AAR14978.2| RNA polymerase II largest subunit [Libinia emarginata]
Length = 445
Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 123/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|31127030|gb|AAF26646.2|AF138996_1 RNA polymerase II largest subunit [Nebalia hessleri]
Length = 624
Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 123/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 371 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 430
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 431 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 490
Query: 123 VKTAETA 129
VKTAET
Sbjct: 491 VKTAETG 497
>gi|38232349|gb|AAR15010.1| RNA polymerase II largest subunit [Podura aquatica]
Length = 445
Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 123/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|324120578|dbj|BAJ78680.1| RNA polymerase II largest subunit [Chrysoperla nipponensis]
Length = 1705
Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/91 (97%), Positives = 90/91 (98%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1072 AQCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1131
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1132 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1162
>gi|324120528|dbj|BAJ78655.1| RNA polymerase II largest subunit [Phraortes illepidus]
Length = 1563
Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN
Sbjct: 705 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 764
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 765 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 824
Query: 124 KTAETA 129
KTAET
Sbjct: 825 KTAETG 830
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/91 (97%), Positives = 90/91 (98%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1051 AQCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1110
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1111 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1141
>gi|324120586|dbj|BAJ78684.1| RNA polymerase II largest subunit [Papilio polytes]
Length = 1518
Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN
Sbjct: 718 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 777
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 778 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 837
Query: 124 KTAETA 129
KTAET
Sbjct: 838 KTAETG 843
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1064 AQVNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1123
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1124 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1154
>gi|324120562|dbj|BAJ78672.1| RNA polymerase II largest subunit [Anacanthocoris striicornis]
Length = 1743
Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 726 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 785
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 786 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 845
Query: 124 KTAETA 129
KTAET
Sbjct: 846 KTAETG 851
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1072 AQAQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1131
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1132 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1162
>gi|299152252|gb|ADJ18208.1| RNA polymerase II large subunit [Hydroscapha natans]
Length = 446
Score = 260 bits (664), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 123/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 193 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 252
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 253 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 312
Query: 123 VKTAETA 129
VKTAET
Sbjct: 313 VKTAETG 319
>gi|38232333|gb|AAR15002.1| RNA polymerase II largest subunit [Nicoletia meinerti]
Length = 445
Score = 260 bits (664), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 123/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|324120584|dbj|BAJ78683.1| RNA polymerase II largest subunit [Lucidina biplagiata]
Length = 1685
Score = 260 bits (664), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN
Sbjct: 722 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 781
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 782 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 841
Query: 124 KTAETA 129
KTAET
Sbjct: 842 KTAETG 847
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1068 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1127
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1128 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1158
>gi|324120526|dbj|BAJ78654.1| RNA polymerase II largest subunit [Isonychia japonica]
Length = 1530
Score = 260 bits (664), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 123/126 (97%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN
Sbjct: 709 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 768
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 769 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 828
Query: 124 KTAETA 129
KTAET
Sbjct: 829 KTAETG 834
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1055 AQAQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1114
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1115 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1145
>gi|332023552|gb|EGI63788.1| DNA-directed RNA polymerase II subunit RPB1 [Acromyrmex echinatior]
Length = 1906
Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 726 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 785
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 786 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 845
Query: 124 KTAETA 129
KTAET
Sbjct: 846 KTAETG 851
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/91 (94%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ +PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1072 AQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1131
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTL+KV
Sbjct: 1132 LTVFLTGAAARDAEKAKNVLCRLEHTTLKKV 1162
>gi|194245566|gb|ACF35393.1| RNA polymerase II large subunit [Bembidion integrum]
Length = 473
Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 106 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 165
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 166 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 225
Query: 124 KTAETA 129
KTAET
Sbjct: 226 KTAETG 231
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/22 (90%), Positives = 21/22 (95%)
Query: 132 AKCAPGEMVGALAAQSLGEPAT 153
A+ APGEMVGALAAQSLGEPAT
Sbjct: 452 AQSAPGEMVGALAAQSLGEPAT 473
>gi|31127016|gb|AAF26628.2|AF138978_1 RNA polymerase II largest subunit [Eumesocampa frigilis]
Length = 445
Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 123/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|307198840|gb|EFN79616.1| DNA-directed RNA polymerase II subunit RPB1 [Harpegnathos saltator]
Length = 1906
Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 726 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 785
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 786 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 845
Query: 124 KTAETA 129
KTAET
Sbjct: 846 KTAETG 851
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/91 (94%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ +PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1072 AQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1131
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTL+KV
Sbjct: 1132 LTVFLTGAAARDAEKAKNVLCRLEHTTLKKV 1162
>gi|307181433|gb|EFN69028.1| DNA-directed RNA polymerase II subunit RPB1 [Camponotus floridanus]
Length = 1906
Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 726 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 785
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 786 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 845
Query: 124 KTAETA 129
KTAET
Sbjct: 846 KTAETG 851
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/91 (94%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ +PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1072 AQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1131
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTL+KV
Sbjct: 1132 LTVFLTGAAARDAEKAKNVLCRLEHTTLKKV 1162
>gi|194245539|gb|ACF35379.1| RNA polymerase II large subunit [Dineutus sublineatus]
Length = 562
Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 122/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 194 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 253
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 254 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 313
Query: 123 VKTAETA 129
VKTAET
Sbjct: 314 VKTAETG 320
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/22 (95%), Positives = 22/22 (100%)
Query: 132 AKCAPGEMVGALAAQSLGEPAT 153
A+CAPGEMVGALAAQSLGEPAT
Sbjct: 541 AQCAPGEMVGALAAQSLGEPAT 562
>gi|380029407|ref|XP_003698365.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Apis florea]
Length = 1893
Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ +PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|322801476|gb|EFZ22137.1| hypothetical protein SINV_09846 [Solenopsis invicta]
Length = 1905
Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/91 (94%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ +PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTL+KV
Sbjct: 1131 LTVFLTGAAARDAEKAKNVLCRLEHTTLKKV 1161
>gi|31127024|gb|AAF26639.2|AF138989_1 RNA polymerase II largest subunit [Limnadia lenticularis]
Length = 624
Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 123/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 371 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 430
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 431 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 490
Query: 123 VKTAETA 129
VKTAET
Sbjct: 491 VKTAETG 497
>gi|324120570|dbj|BAJ78676.1| RNA polymerase II largest subunit [Neocolochelyna itoi]
Length = 1815
Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 726 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 785
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 786 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 845
Query: 124 KTAETA 129
KTAET
Sbjct: 846 KTAETG 851
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1072 AQVFPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1131
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1132 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1162
>gi|340722779|ref|XP_003399779.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
terrestris]
gi|350424170|ref|XP_003493710.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
impatiens]
Length = 1902
Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ +PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|328793442|ref|XP_623281.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Apis mellifera]
Length = 1883
Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ +PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|345487216|ref|XP_003425653.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Nasonia vitripennis]
Length = 1907
Score = 259 bits (663), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 724 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 783
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 784 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 843
Query: 124 KTAETA 129
KTAET
Sbjct: 844 KTAETG 849
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 90/91 (98%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C+PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1070 AQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1129
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTL+KV
Sbjct: 1130 LTVFLTGAAARDAEKAKNVLCRLEHTTLKKV 1160
>gi|194245530|gb|ACF35374.1| RNA polymerase II large subunit [Tenomerga cinerea]
Length = 553
Score = 259 bits (663), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 122/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 194 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 253
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 254 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 313
Query: 123 VKTAETA 129
VKTAET
Sbjct: 314 VKTAETG 320
>gi|194245562|gb|ACF35391.1| RNA polymerase II large subunit [Bembidion inaequale]
Length = 453
Score = 259 bits (663), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 86 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 145
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 146 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 205
Query: 124 KTAETA 129
KTAET
Sbjct: 206 KTAETG 211
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/22 (90%), Positives = 21/22 (95%)
Query: 132 AKCAPGEMVGALAAQSLGEPAT 153
A+ APGEMVGALAAQSLGEPAT
Sbjct: 432 AQSAPGEMVGALAAQSLGEPAT 453
>gi|194245555|gb|ACF35387.1| RNA polymerase II large subunit [Bembidion umbratum]
gi|194245559|gb|ACF35389.1| RNA polymerase II large subunit [Bembidion rapidum]
Length = 562
Score = 259 bits (663), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 122/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 194 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 253
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 254 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 313
Query: 123 VKTAETA 129
VKTAET
Sbjct: 314 VKTAETG 320
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/22 (90%), Positives = 21/22 (95%)
Query: 132 AKCAPGEMVGALAAQSLGEPAT 153
A+ APGEMVGALAAQSLGEPAT
Sbjct: 541 AQSAPGEMVGALAAQSLGEPAT 562
>gi|194245543|gb|ACF35381.1| RNA polymerase II large subunit [Amphizoa lecontei]
Length = 562
Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 122/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 194 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 253
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 254 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 313
Query: 123 VKTAETA 129
VKTAET
Sbjct: 314 VKTAETG 320
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/22 (95%), Positives = 22/22 (100%)
Query: 132 AKCAPGEMVGALAAQSLGEPAT 153
A+CAPGEMVGALAAQSLGEPAT
Sbjct: 541 AQCAPGEMVGALAAQSLGEPAT 562
>gi|383857287|ref|XP_003704136.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Megachile rotundata]
Length = 1904
Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ +PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|270010112|gb|EFA06560.1| hypothetical protein TcasGA2_TC009471 [Tribolium castaneum]
Length = 1899
Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 724 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 783
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 784 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 843
Query: 124 KTAETA 129
KTAET
Sbjct: 844 KTAETG 849
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1070 AQVNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1129
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1130 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1160
>gi|194245551|gb|ACF35385.1| RNA polymerase II large subunit [Bembidion transversale]
gi|194245553|gb|ACF35386.1| RNA polymerase II large subunit [Bembidion plagiatum]
Length = 562
Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 122/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 194 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 253
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 254 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 313
Query: 123 VKTAETA 129
VKTAET
Sbjct: 314 VKTAETG 320
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/22 (90%), Positives = 21/22 (95%)
Query: 132 AKCAPGEMVGALAAQSLGEPAT 153
A+ APGEMVGALAAQSLGEPAT
Sbjct: 541 AQSAPGEMVGALAAQSLGEPAT 562
>gi|324120572|dbj|BAJ78677.1| RNA polymerase II largest subunit [Vespa analis insularis]
Length = 1708
Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ +PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|38232339|gb|AAR15005.1| RNA polymerase II largest subunit [Orchesella imitari]
Length = 445
Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 123/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|324120588|dbj|BAJ78685.1| RNA polymerase II largest subunit [Stenopsyche marmorata]
Length = 1754
Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 726 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 785
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 786 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 845
Query: 124 KTAETA 129
KTAET
Sbjct: 846 KTAETG 851
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 88/91 (96%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1072 AQCNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1131
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1132 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1162
>gi|324120564|dbj|BAJ78673.1| RNA polymerase II largest subunit [Bemisia tabaci]
Length = 1793
Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 727 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 846
Query: 124 KTAETA 129
KTAET
Sbjct: 847 KTAETG 852
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/91 (96%), Positives = 90/91 (98%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C+PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1073 AQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1132
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1133 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1163
>gi|324120574|dbj|BAJ78678.1| RNA polymerase II largest subunit [Protohermes grandis]
Length = 1633
Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/91 (97%), Positives = 90/91 (98%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1072 AQCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1131
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1132 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1162
>gi|91085731|ref|XP_973470.1| PREDICTED: similar to GA13798-PA [Tribolium castaneum]
Length = 2007
Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 729 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 788
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 789 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 848
Query: 124 KTAETA 129
KTAET
Sbjct: 849 KTAETG 854
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1075 AQVNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1134
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1135 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1165
>gi|194245547|gb|ACF35383.1| RNA polymerase II large subunit [Asaphidion yukonense]
Length = 562
Score = 259 bits (662), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 122/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 194 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 253
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 254 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 313
Query: 123 VKTAETA 129
VKTAET
Sbjct: 314 VKTAETG 320
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/22 (90%), Positives = 21/22 (95%)
Query: 132 AKCAPGEMVGALAAQSLGEPAT 153
A+ APGEMVGALAAQSLGEPAT
Sbjct: 541 AQSAPGEMVGALAAQSLGEPAT 562
>gi|324120556|dbj|BAJ78669.1| RNA polymerase II largest subunit [Thrips palmi]
Length = 1708
Score = 259 bits (662), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 707 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 766
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 767 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 826
Query: 124 KTAETA 129
KTAET
Sbjct: 827 KTAETG 832
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 90/91 (98%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C+PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1053 AQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1112
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFL+G AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1113 LTVFLSGVAARDAEKAKNVLCRLEHTTLRKV 1143
>gi|324120542|dbj|BAJ78662.1| RNA polymerase II largest subunit [Oyamia lugubris]
Length = 1742
Score = 259 bits (662), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 728 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 787
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 788 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 847
Query: 124 KTAETA 129
KTAET
Sbjct: 848 KTAETG 853
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/91 (96%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1074 AQVAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1133
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1134 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1164
>gi|324120592|dbj|BAJ78687.1| RNA polymerase II largest subunit [Ctenocephalides felis]
Length = 1749
Score = 259 bits (662), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 724 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 783
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 784 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 843
Query: 124 KTAETA 129
KTAET
Sbjct: 844 KTAETG 849
Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 88/91 (96%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1070 AQCNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1129
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1130 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1160
>gi|324120558|dbj|BAJ78670.1| RNA polymerase II largest subunit [Gynaikothrips ficorum]
Length = 1687
Score = 259 bits (662), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 122/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 726 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 785
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 786 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 845
Query: 123 VKTAETA 129
VKTAET
Sbjct: 846 VKTAETG 852
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/91 (97%), Positives = 90/91 (98%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1073 AQCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1132
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1133 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1163
>gi|324120590|dbj|BAJ78686.1| RNA polymerase II largest subunit [Panorpa takenouchii]
Length = 1725
Score = 259 bits (662), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 724 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 783
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 784 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 843
Query: 124 KTAETA 129
KTAET
Sbjct: 844 KTAETG 849
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C GEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1070 AQCNAGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1129
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1130 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1160
>gi|324120582|dbj|BAJ78682.1| RNA polymerase II largest subunit [Eretes sticticus]
Length = 1677
Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 724 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 783
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 784 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 843
Query: 124 KTAETA 129
KTAET
Sbjct: 844 KTAETG 849
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/91 (97%), Positives = 90/91 (98%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1070 AQCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1129
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1130 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1160
>gi|324120506|dbj|BAJ78644.1| RNA polymerase II largest subunit [Metriocampa sp. 44]
Length = 1738
Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+G+KGSNINISQVIACVGQQN
Sbjct: 706 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGAKGSNINISQVIACVGQQN 765
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 766 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 825
Query: 124 KTAETA 129
KTAET
Sbjct: 826 KTAETG 831
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1052 AQVQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1111
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1112 LTVFLTGNAARDAEKAKNVLCRLEHTTLRKV 1142
>gi|194245564|gb|ACF35392.1| RNA polymerase II large subunit [Bembidion inaequale]
Length = 553
Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 122/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 185 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 244
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 245 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 304
Query: 123 VKTAETA 129
VKTAET
Sbjct: 305 VKTAETG 311
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/22 (90%), Positives = 21/22 (95%)
Query: 132 AKCAPGEMVGALAAQSLGEPAT 153
A+ APGEMVGALAAQSLGEPAT
Sbjct: 532 AQSAPGEMVGALAAQSLGEPAT 553
>gi|38232229|gb|AAR14950.1| RNA polymerase II largest subunit [Argulus sp. Arg2]
Length = 445
Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 122/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLK+MVVAGSKGSNINISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKSMVVAGSKGSNINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|324120544|dbj|BAJ78663.1| RNA polymerase II largest subunit [Euborellia plebeja]
Length = 1812
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 726 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 785
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 786 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 845
Query: 124 KTAETA 129
KTAET
Sbjct: 846 KTAETG 851
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 88/91 (96%), Positives = 90/91 (98%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C+PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1072 AQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1131
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1132 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1162
>gi|194245541|gb|ACF35380.1| RNA polymerase II large subunit [Macrogyrus oblongus]
Length = 554
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 122/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 194 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 253
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 254 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 313
Query: 123 VKTAETA 129
VKTAET
Sbjct: 314 VKTAETG 320
>gi|324120580|dbj|BAJ78681.1| RNA polymerase II largest subunit [Stichotrema asahinai]
Length = 1696
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTE+NNLKAMVVAGSKGSNINISQVIACVGQQN
Sbjct: 722 LRQTFENQVNRILNDARDKTGGSAKKSLTEHNNLKAMVVAGSKGSNINISQVIACVGQQN 781
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 782 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 841
Query: 124 KTAETA 129
KTAET
Sbjct: 842 KTAETG 847
Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 86/91 (94%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ +PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK+PKAPS
Sbjct: 1068 AQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPS 1127
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1128 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1158
>gi|324120546|dbj|BAJ78664.1| RNA polymerase II largest subunit [Forficula hiromasai]
Length = 1744
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 122/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 727 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 846
Query: 124 KTAETA 129
KTAET
Sbjct: 847 KTAETG 852
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 88/91 (96%), Positives = 90/91 (98%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C+PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1073 AQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1132
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1133 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1163
>gi|194245545|gb|ACF35382.1| RNA polymerase II large subunit [Laccophilus pictus]
Length = 562
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 121/127 (95%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAK+SLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 194 TLRQTFENQVNRILNDARDKTGGSAKRSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 253
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 254 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 313
Query: 123 VKTAETA 129
VKTAET
Sbjct: 314 VKTAETG 320
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/22 (86%), Positives = 20/22 (90%)
Query: 132 AKCAPGEMVGALAAQSLGEPAT 153
A+ PGEMVGALAAQSLGEPAT
Sbjct: 541 AQANPGEMVGALAAQSLGEPAT 562
>gi|170062578|ref|XP_001866731.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
gi|167880465|gb|EDS43848.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
Length = 1874
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 121/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 723 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 782
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP+EF+FHAMGGREGLIDTAV
Sbjct: 783 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAV 842
Query: 124 KTAETA 129
KTAET
Sbjct: 843 KTAETG 848
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 72/91 (79%), Positives = 74/91 (81%), Gaps = 15/91 (16%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C PGEM MTLNTFHFAGVSSKNVTLGVPRLKEIINISK+PKAPS
Sbjct: 1069 AQCNPGEM---------------MTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPS 1113
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1114 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1144
>gi|403182441|gb|EJY57389.1| AAEL017363-PA [Aedes aegypti]
Length = 1887
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 121/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 723 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 782
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP+EF+FHAMGGREGLIDTAV
Sbjct: 783 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAV 842
Query: 124 KTAETA 129
KTAET
Sbjct: 843 KTAETG 848
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK+PKAPS
Sbjct: 1069 AQCNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPS 1128
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1129 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1159
>gi|38232273|gb|AAR14972.1| RNA polymerase II largest subunit [Harbansus paucichelatus]
Length = 445
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 122/127 (96%), Positives = 124/127 (97%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFI DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRTLPHFITDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|324120566|dbj|BAJ78674.1| RNA polymerase II largest subunit [Uroleucon nigrotuberculatum]
Length = 1862
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 121/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+G+KGSNINISQVIACVGQQN
Sbjct: 726 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGAKGSNINISQVIACVGQQN 785
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 786 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 845
Query: 124 KTAETA 129
KTAET
Sbjct: 846 KTAETG 851
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1072 AQAQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1131
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1132 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1162
>gi|312375441|gb|EFR22815.1| hypothetical protein AND_14157 [Anopheles darlingi]
Length = 1880
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 121/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 723 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 782
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP+EF+FHAMGGREGLIDTAV
Sbjct: 783 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAV 842
Query: 124 KTAETA 129
KTAET
Sbjct: 843 KTAETG 848
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/91 (94%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK+PKAPS
Sbjct: 1069 AQVNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPS 1128
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1129 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1159
>gi|194245557|gb|ACF35388.1| RNA polymerase II large subunit [Bembidion mandibulare]
Length = 562
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 121/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+G+KGSNINISQVIACVGQQN
Sbjct: 195 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGAKGSNINISQVIACVGQQN 254
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 255 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 314
Query: 124 KTAETA 129
KTAET
Sbjct: 315 KTAETG 320
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/22 (90%), Positives = 21/22 (95%)
Query: 132 AKCAPGEMVGALAAQSLGEPAT 153
A+ APGEMVGALAAQSLGEPAT
Sbjct: 541 AQSAPGEMVGALAAQSLGEPAT 562
>gi|193700005|ref|XP_001943054.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1862
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 121/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+G+KGSNINISQVIACVGQQN
Sbjct: 726 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGAKGSNINISQVIACVGQQN 785
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 786 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 845
Query: 124 KTAETA 129
KTAET
Sbjct: 846 KTAETG 851
Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1072 AQAQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1131
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1132 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1162
>gi|31127038|gb|AAF26658.2|AF139008_1 RNA polymerase II largest subunit [Speleonectes tulumensis]
Length = 636
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/127 (96%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 383 TLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 442
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 443 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 502
Query: 123 VKTAETA 129
VKTAET
Sbjct: 503 VKTAETG 509
>gi|520503|gb|AAC83397.1| RNA polymerase II, largest subunit, partial [Artemia salina]
Length = 1341
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 121/127 (95%), Positives = 124/127 (97%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAK SLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 644 TLRQTFENQVNRILNDARDKTGGSAKNSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 703
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 704 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 763
Query: 123 VKTAETA 129
VKTAET
Sbjct: 764 VKTAETG 770
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/91 (89%), Positives = 86/91 (94%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGA+AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIIN+S+ PKAPS
Sbjct: 991 AQAVPGEMVGAIAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINVSRSPKAPS 1050
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAK VLCRLEHTTL+KV
Sbjct: 1051 LTVFLTGTAARDAEKAKQVLCRLEHTTLKKV 1081
>gi|119112579|ref|XP_317690.3| AGAP007810-PA [Anopheles gambiae str. PEST]
gi|116123421|gb|EAA12308.3| AGAP007810-PA [Anopheles gambiae str. PEST]
Length = 1878
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 121/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 723 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 782
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP+EF+FHAMGGREGLIDTAV
Sbjct: 783 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAV 842
Query: 124 KTAETA 129
KTAET
Sbjct: 843 KTAETG 848
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 89/91 (97%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+C PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK+PKAPS
Sbjct: 1069 AQCNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPS 1128
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1129 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1159
>gi|19528357|gb|AAL90293.1| LD43558p [Drosophila melanogaster]
Length = 1429
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 120/125 (96%), Positives = 125/125 (100%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 267 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 326
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 327 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 386
Query: 124 KTAET 128
KTAET
Sbjct: 387 KTAET 391
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 613 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 672
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 673 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 703
>gi|38232265|gb|AAR14968.1| RNA polymerase II largest subunit [Forficula auricularia]
Length = 445
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 121/127 (95%), Positives = 125/127 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+G+KGSNINISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGAKGSNINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|328722767|ref|XP_001943949.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1958
Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 121/126 (96%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYN+LKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 726 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNSLKAMVVSGSKGSNINISQVIACVGQQN 785
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 786 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 845
Query: 124 KTAETA 129
KTAET
Sbjct: 846 KTAETG 851
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1072 AQAQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1131
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1132 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKV 1162
>gi|125983594|ref|XP_001355562.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
gi|54643878|gb|EAL32621.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
Length = 1889
Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|38232235|gb|AAR14953.1| RNA polymerase II largest subunit [Artemia salina]
Length = 445
Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 121/127 (95%), Positives = 124/127 (97%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAK SLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNDARDKTGGSAKNSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|4808166|emb|CAB42797.1| largest subunit of the RNA polymerase II complex [Drosophila
pseudoobscura]
Length = 1811
Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 120/125 (96%), Positives = 125/125 (100%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 647 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 706
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 707 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 766
Query: 124 KTAET 128
KTAET
Sbjct: 767 KTAET 771
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 993 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1052
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1053 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1083
>gi|4808164|emb|CAB42795.1| largest subunit of the RNA polymerase II complex [Drosophila
guanche]
gi|40217263|emb|CAD68001.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217265|emb|CAD70679.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217267|emb|CAD70680.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217269|emb|CAD70681.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217271|emb|CAD70682.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217273|emb|CAD70683.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217275|emb|CAD70684.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217277|emb|CAD70685.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217279|emb|CAD70686.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217281|emb|CAD70687.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217283|emb|CAD70688.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217285|emb|CAD70689.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217287|emb|CAD70690.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217289|emb|CAD70691.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217291|emb|CAD70692.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217293|emb|CAD70693.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217295|emb|CAD70694.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217297|emb|CAD70695.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217299|emb|CAD70696.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217301|emb|CAD70697.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217303|emb|CAD70698.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217305|emb|CAD70699.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217307|emb|CAD70700.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217309|emb|CAD70701.1| RNA polymerase II large subunit [Drosophila guanche]
Length = 1889
Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|195446609|ref|XP_002070845.1| GK25468 [Drosophila willistoni]
gi|194166930|gb|EDW81831.1| GK25468 [Drosophila willistoni]
Length = 1890
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|195479340|ref|XP_002100852.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
gi|194188376|gb|EDX01960.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
Length = 1889
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|308229954|gb|ADO24384.1| RNA polymerase II large subunit, partial [Drosophila nigromaculata]
Length = 1872
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 718 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 777
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 778 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 837
Query: 124 KTAETA 129
KTAET
Sbjct: 838 KTAETG 843
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/91 (94%), Positives = 87/91 (95%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNT HFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1064 AQANPGEMVGALAAQSLGEPATQMTLNTSHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1123
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1124 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1154
>gi|195059969|ref|XP_001995730.1| GH17604 [Drosophila grimshawi]
gi|193896516|gb|EDV95382.1| GH17604 [Drosophila grimshawi]
Length = 1889
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|9587179|gb|AAF89193.1|AF272643_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587181|gb|AAF89194.1|AF272644_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587183|gb|AAF89195.1|AF272645_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587185|gb|AAF89196.1|AF272646_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587187|gb|AAF89197.1|AF272647_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587189|gb|AAF89198.1|AF272648_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587191|gb|AAF89199.1|AF272649_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587193|gb|AAF89200.1|AF272650_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587195|gb|AAF89201.1|AF272651_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587197|gb|AAF89202.1|AF272652_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587199|gb|AAF89203.1|AF272653_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|4808177|emb|CAB42800.1| largest subunit of the RNA polymerase II complex [Drosophila
subobscura]
Length = 1889
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|195133818|ref|XP_002011336.1| GI16472 [Drosophila mojavensis]
gi|193907311|gb|EDW06178.1| GI16472 [Drosophila mojavensis]
Length = 1889
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|162951789|gb|ABY21756.1| RE30267p [Drosophila melanogaster]
Length = 1887
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|17530899|ref|NP_511124.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|14286163|sp|P04052.4|RPB1_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|7292659|gb|AAF48057.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|269954742|gb|ACZ54678.1| FI12846p [Drosophila melanogaster]
Length = 1887
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|4808162|emb|CAB42796.1| largest subunit of the RNA polymerase II complex [Drosophila
madeirensis]
Length = 1889
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|194762514|ref|XP_001963379.1| GF20366 [Drosophila ananassae]
gi|190629038|gb|EDV44455.1| GF20366 [Drosophila ananassae]
Length = 1889
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|38232397|gb|AAR15034.1| RNA polymerase II largest subunit [Streptocephalus seali]
Length = 370
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 121/126 (96%), Positives = 124/126 (98%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAK SLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 118 LRQTFENQVNRILNDARDKTGGSAKNSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 177
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 178 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 237
Query: 124 KTAETA 129
KTAET
Sbjct: 238 KTAETG 243
>gi|195168657|ref|XP_002025147.1| GL26742 [Drosophila persimilis]
gi|194108592|gb|EDW30635.1| GL26742 [Drosophila persimilis]
Length = 1804
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|195355215|ref|XP_002044088.1| GM13065 [Drosophila sechellia]
gi|194129357|gb|EDW51400.1| GM13065 [Drosophila sechellia]
Length = 1887
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|194889556|ref|XP_001977109.1| RNA polymerase II 215kD subunit [Drosophila erecta]
gi|190648758|gb|EDV46036.1| RNA polymerase II 215kD subunit [Drosophila erecta]
Length = 1889
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|195399163|ref|XP_002058190.1| GJ15949 [Drosophila virilis]
gi|194150614|gb|EDW66298.1| GJ15949 [Drosophila virilis]
Length = 1889
Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|308229948|gb|ADO24381.1| RNA polymerase II large subunit, partial [Drosophila cardini]
Length = 1870
Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 718 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 777
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 778 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 837
Query: 124 KTAETA 129
KTAET
Sbjct: 838 KTAETG 843
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1064 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1123
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1124 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1154
>gi|308229952|gb|ADO24383.1| RNA polymerase II large subunit, partial [Drosophila guttifera]
Length = 1872
Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 718 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 777
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 778 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 837
Query: 124 KTAETA 129
KTAET
Sbjct: 838 KTAETG 843
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1064 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1123
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1124 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1154
>gi|308229946|gb|ADO24380.1| RNA polymerase II large subunit, partial [Drosophila brachynephros]
Length = 1847
Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 706 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 765
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 766 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 825
Query: 124 KTAETA 129
KTAET
Sbjct: 826 KTAETG 831
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1052 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1111
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1112 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1142
>gi|308229956|gb|ADO24385.1| RNA polymerase II large subunit, partial [Drosophila phalerata]
Length = 1849
Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 706 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 765
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 766 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 825
Query: 124 KTAETA 129
KTAET
Sbjct: 826 KTAETG 831
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1052 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1111
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1112 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1142
>gi|308229944|gb|ADO24379.1| RNA polymerase II large subunit, partial [Drosophila angularis]
Length = 1847
Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 706 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 765
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 766 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 825
Query: 124 KTAETA 129
KTAET
Sbjct: 826 KTAETG 831
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1052 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1111
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1112 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1142
>gi|308229942|gb|ADO24378.1| RNA polymerase II large subunit, partial [Drosophila acutilabella]
Length = 1845
Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 706 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 765
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 766 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 825
Query: 124 KTAETA 129
KTAET
Sbjct: 826 KTAETG 831
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1052 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1111
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1112 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1142
>gi|308229958|gb|ADO24386.1| RNA polymerase II large subunit, partial [Drosophila quinaria]
Length = 1847
Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 706 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 765
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 766 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 825
Query: 124 KTAETA 129
KTAET
Sbjct: 826 KTAETG 831
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1052 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1111
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1112 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1142
>gi|194245528|gb|ACF35373.1| RNA polymerase II large subunit [Sialis sp. ALW-2008]
Length = 555
Score = 256 bits (653), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 121/126 (96%), Positives = 124/126 (98%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQ IACVGQQN
Sbjct: 195 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQGIACVGQQN 254
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 255 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 314
Query: 124 KTAETA 129
KTAET
Sbjct: 315 KTAETG 320
>gi|308229950|gb|ADO24382.1| RNA polymerase II large subunit, partial [Drosophila falleni]
Length = 1847
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 119/126 (94%), Positives = 124/126 (98%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 706 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 765
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYL GLTPSEF+FHAMGGREGLIDTAV
Sbjct: 766 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLTGLTPSEFYFHAMGGREGLIDTAV 825
Query: 124 KTAETA 129
KTAET
Sbjct: 826 KTAETG 831
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1052 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1111
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1112 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1142
>gi|158332|gb|AAA28868.1| RNA polymerase II [Drosophila melanogaster]
Length = 1896
Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 119/126 (94%), Positives = 124/126 (98%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDA DKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENKVNRILNDAHDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1161
>gi|194245534|gb|ACF35376.1| RNA polymerase II large subunit [Scaphinotus petersi]
Length = 369
Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 124/126 (98%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSA+KSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 2 LRQTFENQVNRILNDARDKTGGSAQKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 61
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+F AMGGREGLIDTAV
Sbjct: 62 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFPAMGGREGLIDTAV 121
Query: 124 KTAETA 129
KTAET
Sbjct: 122 KTAETG 127
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/22 (95%), Positives = 22/22 (100%)
Query: 132 AKCAPGEMVGALAAQSLGEPAT 153
A+CAPGEMVGALAAQSLGEPAT
Sbjct: 348 AQCAPGEMVGALAAQSLGEPAT 369
>gi|38232237|gb|AAR14954.1| RNA polymerase II largest subunit [Armadillidium vulgare]
Length = 736
Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 120/127 (94%), Positives = 123/127 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILN+ARDKTG SAK SLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNNARDKTGVSAKTSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/97 (91%), Positives = 89/97 (91%), Gaps = 1/97 (1%)
Query: 127 ETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK 185
ET N A PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK
Sbjct: 533 ETRFNQAIANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK 592
Query: 186 KPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
KPKAPSLTVFL G AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 593 KPKAPSLTVFLLGAAARDAEKAKNVLCRLEHTTLRKV 629
>gi|38232365|gb|AAR15018.1| RNA polymerase II largest subunit [Rhinotus purpureus]
Length = 370
Score = 253 bits (646), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 119/126 (94%), Positives = 123/126 (97%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSA+KSL+E+NN KAMVVAGSKGS INISQVIACVGQQN
Sbjct: 118 LRQTFENQVNRILNDARDKTGGSAQKSLSEFNNFKAMVVAGSKGSKINISQVIACVGQQN 177
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 178 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 237
Query: 124 KTAETA 129
KTAET
Sbjct: 238 KTAETG 243
>gi|38232389|gb|AAR15030.1| RNA polymerase II largest subunit [Trachyiulus nordquisti]
Length = 370
Score = 253 bits (645), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 118/126 (93%), Positives = 123/126 (97%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSA+KSL+EYNN KAMVV+G+KGS INISQVIACVGQQN
Sbjct: 118 LRQTFENQVNRILNDARDKTGGSAQKSLSEYNNFKAMVVSGAKGSKINISQVIACVGQQN 177
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 178 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 237
Query: 124 KTAETA 129
KTAET
Sbjct: 238 KTAETG 243
>gi|38232279|gb|AAR14975.1| RNA polymerase II largest subunit [Lepas anserifera]
Length = 445
Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 118/127 (92%), Positives = 122/127 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG SAK SL EYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNDARDKTGASAKNSLKEYNNLKAMVVAGSKGSNINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPH+IKDDYGPESRGFVENSYLAGLTP+EF+FHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRTLPHYIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|31127018|gb|AAF26632.2|AF138982_1 RNA polymerase II largest subunit [Hanseniella sp. 'Han']
Length = 468
Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 117/126 (92%), Positives = 123/126 (97%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQN
Sbjct: 118 LRQTFENQVNRILNDARDKTGGSAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQN 177
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 178 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 237
Query: 124 KTAETA 129
KTAET
Sbjct: 238 KTAETG 243
>gi|38232373|gb|AAR15022.1| RNA polymerase II largest subunit [Skogsbergia lerneri]
Length = 445
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/127 (93%), Positives = 123/127 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILN+ARDKTGGSAK SLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNEARDKTGGSAKMSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKR+LPHFI DDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRSLPHFIADDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|31127052|gb|AAC03140.2| RNA polymerase II largest subunit [Pedetontus saltator]
Length = 722
Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/127 (95%), Positives = 122/127 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 371 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 430
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIK GPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 431 NVEGKRIPFGFRKRTLPHFIKXXXGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 490
Query: 123 VKTAETA 129
VKTAET
Sbjct: 491 VKTAETG 497
>gi|38232319|gb|AAR14995.1| RNA polymerase II largest subunit [Mesocyclops edax]
Length = 445
Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 117/126 (92%), Positives = 122/126 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SAK+SLTE+NN K MVVAGSKGS+IN+SQVIACVGQQN
Sbjct: 193 LRQTFENQVNRILNDARDKTGASAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQN 252
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 253 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 312
Query: 124 KTAETA 129
KTAET
Sbjct: 313 KTAETG 318
>gi|38232379|gb|AAR15025.1| RNA polymerase II largest subunit [Thereuonema sp. JCR-2003]
Length = 445
Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 117/127 (92%), Positives = 122/127 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN KAMVV+G+KGS INISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKAMVVSGAKGSKINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|38232241|gb|AAR14956.1| RNA polymerase II largest subunit [Chthamalus fragilis]
Length = 445
Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 118/127 (92%), Positives = 121/127 (95%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFEN VNRILNDARDKTG SAK SL EYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 192 TLRQTFENHVNRILNDARDKTGASAKDSLREYNNLKAMVVAGSKGSNINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP+EF+FHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|31127003|gb|AAF26621.2|AF138971_1 RNA polymerase II largest subunit [Semibalanus balanoides]
Length = 624
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 118/127 (92%), Positives = 121/127 (95%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFEN VNRILNDARDKTG SAK SL EYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 371 TLRQTFENHVNRILNDARDKTGASAKNSLGEYNNLKAMVVAGSKGSNINISQVIACVGQQ 430
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP+EF+FHAMGGREGLIDTA
Sbjct: 431 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTA 490
Query: 123 VKTAETA 129
VKTAET
Sbjct: 491 VKTAETG 497
>gi|38232371|gb|AAR15021.1| RNA polymerase II largest subunit [Scutigerella sp. Scu3]
Length = 624
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 117/127 (92%), Positives = 123/127 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQ
Sbjct: 371 TLRQTFENQVNRILNDARDKTGGSAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQ 430
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 431 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 490
Query: 123 VKTAETA 129
VKTAET
Sbjct: 491 VKTAETG 497
>gi|31127034|gb|AAF26651.2|AF139001_1 RNA polymerase II largest subunit [Polyxenus fasciculatus]
Length = 751
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 116/127 (91%), Positives = 123/127 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSA++SL+E+NN KAMVV+G+KGS INISQVIACVGQQ
Sbjct: 383 TLRQTFENQVNRILNDARDKTGGSAQRSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQ 442
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 443 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 502
Query: 123 VKTAETA 129
VKTAET
Sbjct: 503 VKTAETG 509
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/23 (82%), Positives = 21/23 (91%)
Query: 131 NAKCAPGEMVGALAAQSLGEPAT 153
+A+ PGEMVGALAAQSLGEPAT
Sbjct: 729 HAQVQPGEMVGALAAQSLGEPAT 751
>gi|31127022|gb|AAF26634.2|AF138984_1 RNA polymerase II largest subunit [Hutchinsoniella macracantha]
Length = 445
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 118/126 (93%), Positives = 121/126 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SAKKSLTE+NN K MVVAGSKGSNINISQVIACVGQQN
Sbjct: 193 LRQTFENQVNRILNDARDKTGASAKKSLTEFNNFKIMVVAGSKGSNINISQVIACVGQQN 252
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP EF+FHAMGGREGLIDTAV
Sbjct: 253 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPMEFYFHAMGGREGLIDTAV 312
Query: 124 KTAETA 129
KTAET
Sbjct: 313 KTAETG 318
>gi|31127046|gb|AAC03136.3| RNA polymerase II largest subunit [Limulus polyphemus]
Length = 778
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 116/125 (92%), Positives = 122/125 (97%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQN
Sbjct: 263 LRQTFENQVNRILNDARDKTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQN 322
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 323 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 382
Query: 124 KTAET 128
KTAET
Sbjct: 383 KTAET 387
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/60 (93%), Positives = 58/60 (96%)
Query: 163 AGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
AGVS+KNVTLGVPRLKEIINISKKPK PSLTVFLTG AARDAEKAK+VLCRLEHTTLRKV
Sbjct: 640 AGVSAKNVTLGVPRLKEIINISKKPKTPSLTVFLTGSAARDAEKAKDVLCRLEHTTLRKV 699
>gi|72187100|gb|AAC03141.2| RNA polymerase II largest subunit [Scutigera coleoptrata]
Length = 582
Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 116/127 (91%), Positives = 122/127 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQ
Sbjct: 231 TLRQTFENQVNRILNDARDKTGSSAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQ 290
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 291 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 350
Query: 123 VKTAETA 129
VKTAET
Sbjct: 351 VKTAETG 357
>gi|38232209|gb|AAR14940.1| RNA polymerase II largest subunit [Acanthocyclops vernalis]
Length = 444
Score = 250 bits (638), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 116/126 (92%), Positives = 122/126 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SAK+SLTE+NN K MVVAG+KGS+IN+SQVIACVGQQN
Sbjct: 193 LRQTFENQVNRILNDARDKTGASAKRSLTEFNNFKVMVVAGAKGSDINVSQVIACVGQQN 252
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 253 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 312
Query: 124 KTAETA 129
KTAET
Sbjct: 313 KTAETG 318
>gi|31127048|gb|AAC03137.3| RNA polymerase II largest subunit [Mastigoproctus giganteus]
Length = 887
Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 116/125 (92%), Positives = 122/125 (97%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQN
Sbjct: 372 LRQTFENQVNRILNDARDKTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQN 431
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 432 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 491
Query: 124 KTAET 128
KTAET
Sbjct: 492 KTAET 496
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/60 (91%), Positives = 58/60 (96%)
Query: 163 AGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
AGVS+KNVTLGVPRLKEIINISK+PK PSLTVFLTG AARDAEKAK+VLCRLEHTTLRKV
Sbjct: 749 AGVSAKNVTLGVPRLKEIINISKRPKTPSLTVFLTGAAARDAEKAKDVLCRLEHTTLRKV 808
>gi|241301792|ref|XP_002407502.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
gi|215497181|gb|EEC06675.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
Length = 1937
Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 116/126 (92%), Positives = 122/126 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/87 (94%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIINISKKPK PSLTVF
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVF 1142
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTG AARDAEKAK+VLCRLEHTTLRKV
Sbjct: 1143 LTGAAARDAEKAKDVLCRLEHTTLRKV 1169
>gi|260796451|ref|XP_002593218.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
gi|229278442|gb|EEN49229.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
Length = 1934
Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 116/126 (92%), Positives = 122/126 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSA+KSL+E+NN K+MVVAGSKGS INISQVIACVGQQN
Sbjct: 729 LRQTFENQVNRILNDARDKTGGSAQKSLSEFNNFKSMVVAGSKGSKINISQVIACVGQQN 788
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 789 VEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 848
Query: 124 KTAETA 129
KT+ET
Sbjct: 849 KTSETG 854
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/91 (86%), Positives = 84/91 (92%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SKKPK PS
Sbjct: 1075 AIVQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPS 1134
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFL GQ A DAEKAK++LCRLEHTTLRKV
Sbjct: 1135 LTVFLLGQPANDAEKAKDILCRLEHTTLRKV 1165
>gi|427777531|gb|JAA54217.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
Length = 1941
Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 116/126 (92%), Positives = 122/126 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQN
Sbjct: 730 LRQTFENQVNRILNDARDKTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQN 789
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 790 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 849
Query: 124 KTAETA 129
KTAET
Sbjct: 850 KTAETG 855
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/87 (94%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIINISKKPK PSLTVF
Sbjct: 1080 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVF 1139
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTG AARDAEKAK+VLCRLEHTTLRKV
Sbjct: 1140 LTGAAARDAEKAKDVLCRLEHTTLRKV 1166
>gi|38232223|gb|AAR14947.1| RNA polymerase II largest subunit [Allopauropus proximus]
Length = 445
Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 116/127 (91%), Positives = 122/127 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG +A+KSLTE+NN K+MVV+GSKGS INISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNDARDKTGSNAQKSLTEFNNFKSMVVSGSKGSKINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|31127036|gb|AAF26656.2|AF139006_1 RNA polymerase II largest subunit [Scolopendra polymorpha]
Length = 734
Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 116/127 (91%), Positives = 122/127 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN KAMVV+G+KGS INISQVIACVGQQ
Sbjct: 383 TLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKAMVVSGAKGSKINISQVIACVGQQ 442
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 443 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 502
Query: 123 VKTAETA 129
VKTAET
Sbjct: 503 VKTAETG 509
>gi|38232259|gb|AAR14965.1| RNA polymerase II largest subunit [Eurypauropus spinosus]
Length = 445
Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 116/126 (92%), Positives = 122/126 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+E+NN K+MVV+GSKGS INISQVIACVGQQN
Sbjct: 193 LRQTFENQVNRILNDARDKTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQN 252
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 253 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 312
Query: 124 KTAETA 129
KTAET
Sbjct: 313 KTAETG 318
>gi|31127012|gb|AAF26625.2|AF138975_1 RNA polymerase II largest subunit [Carcinoscorpius rotundicauda]
Length = 445
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 116/127 (91%), Positives = 122/127 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNDARDKTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|402590450|gb|EJW84380.1| DNA-directed RNA polymerase, partial [Wuchereria bancrofti]
Length = 1251
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 115/125 (92%), Positives = 121/125 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN VNRILNDARD+TGGSA++SL+EYNN KAMVVAGSKGS INISQVIACVGQQN
Sbjct: 106 LRQTFENMVNRILNDARDRTGGSAQRSLSEYNNFKAMVVAGSKGSKINISQVIACVGQQN 165
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 166 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 225
Query: 124 KTAET 128
KTAET
Sbjct: 226 KTAET 230
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 85/91 (93%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVGA+AAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SKKPK PS
Sbjct: 452 AIVQPGEMVGAIAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPS 511
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFL G AA+DAEKAK+VLC+LEHTTLRKV
Sbjct: 512 LTVFLQGTAAKDAEKAKDVLCKLEHTTLRKV 542
>gi|391332786|ref|XP_003740810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1851
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 115/125 (92%), Positives = 123/125 (98%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSA+KSL+E+NN K+MVV+G+KGS INISQVIACVGQQN
Sbjct: 727 LRQTFENQVNRILNDARDKTGGSAQKSLSEFNNFKSMVVSGAKGSKINISQVIACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDD+GPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFRKRTLPHFIKDDFGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 846
Query: 124 KTAET 128
KTAET
Sbjct: 847 KTAET 851
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/87 (90%), Positives = 84/87 (96%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIINISK+PK PSLTVF
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKQPKTPSLTVF 1136
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L G +ARDAEKAK+VLCRLEHTTLRKV
Sbjct: 1137 LKGASARDAEKAKDVLCRLEHTTLRKV 1163
>gi|219879765|gb|AAR15052.2| RNA polymerase II largest subunit [Peripatus sp. Per3]
Length = 515
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 115/127 (90%), Positives = 122/127 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQ
Sbjct: 262 TLRQTFENQVNRILNDARDKTGGSAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQ 321
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFH+MGGREGLIDTA
Sbjct: 322 NVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHSMGGREGLIDTA 381
Query: 123 VKTAETA 129
VKTAET
Sbjct: 382 VKTAETG 388
>gi|391335740|ref|XP_003742247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1842
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 115/126 (91%), Positives = 123/126 (97%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSA+KSL+E+NN K+MVV+G+KGS INISQVIACVGQQN
Sbjct: 726 LRQTFENQVNRILNDARDKTGGSAQKSLSEFNNFKSMVVSGAKGSKINISQVIACVGQQN 785
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDD+GPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 786 VEGKRIPFGFRKRTLPHFIKDDFGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 845
Query: 124 KTAETA 129
KTAET
Sbjct: 846 KTAETG 851
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/87 (90%), Positives = 84/87 (96%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIINISK+PK PSLTVF
Sbjct: 1076 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKQPKTPSLTVF 1135
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L G +ARDAEKAK+VLCRLEHTTLRKV
Sbjct: 1136 LKGASARDAEKAKDVLCRLEHTTLRKV 1162
>gi|38232355|gb|AAR15013.1| RNA polymerase II largest subunit [Paralamyctes sp. JCR-2003]
Length = 370
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 116/126 (92%), Positives = 121/126 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+++NN K MVVAGSKGS INISQVIACVGQQN
Sbjct: 118 LRQTFENQVNRILNDARDKTGSSAQKSLSDFNNFKGMVVAGSKGSKINISQVIACVGQQN 177
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 178 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 237
Query: 124 KTAETA 129
KTAET
Sbjct: 238 KTAETG 243
>gi|393905343|gb|EFO23174.2| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1870
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 115/125 (92%), Positives = 121/125 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN VNRILNDARD+TGGSA++SL+EYNN KAMVVAGSKGS INISQVIACVGQQN
Sbjct: 725 LRQTFENMVNRILNDARDRTGGSAQRSLSEYNNFKAMVVAGSKGSKINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 844
Query: 124 KTAET 128
KTAET
Sbjct: 845 KTAET 849
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 85/91 (93%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVGA+AAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SKKPK PS
Sbjct: 1071 AIVQPGEMVGAIAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFL G AA+DAEKAK+VLC+LEHTTLRKV
Sbjct: 1131 LTVFLQGIAAKDAEKAKDVLCKLEHTTLRKV 1161
>gi|312076520|ref|XP_003140898.1| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1875
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 115/125 (92%), Positives = 121/125 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN VNRILNDARD+TGGSA++SL+EYNN KAMVVAGSKGS INISQVIACVGQQN
Sbjct: 725 LRQTFENMVNRILNDARDRTGGSAQRSLSEYNNFKAMVVAGSKGSKINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 844
Query: 124 KTAET 128
KTAET
Sbjct: 845 KTAET 849
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 85/91 (93%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVGA+AAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SKKPK PS
Sbjct: 1076 AIVQPGEMVGAIAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPS 1135
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFL G AA+DAEKAK+VLC+LEHTTLRKV
Sbjct: 1136 LTVFLQGIAAKDAEKAKDVLCKLEHTTLRKV 1166
>gi|31127028|gb|AAF26643.2|AF138993_1 RNA polymerase II largest subunit [Nipponopsalis abei]
Length = 445
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 115/126 (91%), Positives = 122/126 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQN
Sbjct: 193 LRQTFENQVNRILNDARDKTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQN 252
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 253 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 312
Query: 124 KTAETA 129
KTAET
Sbjct: 313 KTAETG 318
>gi|170587086|ref|XP_001898310.1| DNA-directed RNA polymerase II largest subunit [Brugia malayi]
gi|158594705|gb|EDP33289.1| DNA-directed RNA polymerase II largest subunit, putative [Brugia
malayi]
Length = 1943
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 115/125 (92%), Positives = 121/125 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN VNRILNDARD+TGGSA++SL+EYNN KAMVVAGSKGS INISQVIACVGQQN
Sbjct: 798 LRQTFENMVNRILNDARDRTGGSAQRSLSEYNNFKAMVVAGSKGSKINISQVIACVGQQN 857
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 858 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 917
Query: 124 KTAET 128
KTAET
Sbjct: 918 KTAET 922
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 85/91 (93%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVGA+AAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SKKPK PS
Sbjct: 1144 AIVQPGEMVGAIAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPS 1203
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFL G AA+DAEKAK+VLC+LEHTTLRKV
Sbjct: 1204 LTVFLQGTAAKDAEKAKDVLCKLEHTTLRKV 1234
>gi|72255755|gb|AAK12725.2| RNA polymerase II largest subunit [Hadrurus arizonensis]
Length = 543
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 116/126 (92%), Positives = 121/126 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN KAMVV+G+KGS INISQVIACVGQQN
Sbjct: 193 LRQTFENQVNRILNDARDKTGASAQKSLSEYNNFKAMVVSGAKGSKINISQVIACVGQQN 252
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDD GPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 253 VEGKRIPFGFRKRTLPHFIKDDNGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 312
Query: 124 KTAETA 129
KTAET
Sbjct: 313 KTAETG 318
>gi|31127020|gb|AAF26631.2|AF138981_1 RNA polymerase II largest subunit [Endeis laevis]
Length = 445
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 115/127 (90%), Positives = 122/127 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG SA+KSL+E+NN KAMVV+GSKGS INISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNDARDKTGSSAQKSLSEFNNFKAMVVSGSKGSKINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL+GLTP+EFFFHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLSGLTPAEFFFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|72255752|gb|AAK12730.2| RNA polymerase II largest subunit [Heterometrus spinifer]
Length = 445
Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 116/127 (91%), Positives = 121/127 (95%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN KAMVV+G+KGS INISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNDARDKTGASAQKSLSEYNNFKAMVVSGAKGSKINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDD GPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKRTLPHFIKDDNGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|31126986|gb|AAK11870.2| RNA polymerase II largest subunit [Abacion magnum]
Length = 624
Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 115/127 (90%), Positives = 122/127 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSA+KSL+E+NN KAMVV+G+K S INISQVIACVGQQ
Sbjct: 371 TLRQTFENQVNRILNDARDKTGGSAQKSLSEFNNFKAMVVSGAKXSKINISQVIACVGQQ 430
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEG+RIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 431 NVEGRRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 490
Query: 123 VKTAETA 129
VKTAET
Sbjct: 491 VKTAETG 497
>gi|324499938|gb|ADY39985.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 1867
Score = 246 bits (629), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 114/125 (91%), Positives = 121/125 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN VNRILNDARD+TGGSA++SL+E+NN KAMVVAGSKGS INISQVIACVGQQN
Sbjct: 725 LRQTFENMVNRILNDARDRTGGSAQRSLSEFNNFKAMVVAGSKGSKINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 844
Query: 124 KTAET 128
KTAET
Sbjct: 845 KTAET 849
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/91 (86%), Positives = 86/91 (94%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVGA+AAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SKKPK PS
Sbjct: 1071 AIVQPGEMVGAIAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AA+DAEKAK+VLC+LEHTTLRKV
Sbjct: 1131 LTVFLTGTAAKDAEKAKDVLCKLEHTTLRKV 1161
>gi|291220940|ref|XP_002730482.1| PREDICTED: DNA-directed RNA polymerase II A-like [Saccoglossus
kowalevskii]
Length = 1932
Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 114/126 (90%), Positives = 121/126 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNR+LNDARDKTG SA+KSL+E+NN KAMVVAGSKGS INISQVIACVGQQN
Sbjct: 734 LRQTFENQVNRLLNDARDKTGSSAQKSLSEFNNFKAMVVAGSKGSKINISQVIACVGQQN 793
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAGLTP+EF+FHAMGGREGLIDTAV
Sbjct: 794 VEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAV 853
Query: 124 KTAETA 129
KTAET
Sbjct: 854 KTAETG 859
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/86 (93%), Positives = 83/86 (96%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFL 196
GEM G LAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIINISKKPK PSLTVFL
Sbjct: 1085 GEMCGPLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVFL 1144
Query: 197 TGQAARDAEKAKNVLCRLEHTTLRKV 222
TGQAARDAEKAK+VLCRLEHTTLRKV
Sbjct: 1145 TGQAARDAEKAKDVLCRLEHTTLRKV 1170
>gi|38232217|gb|AAR14944.1| RNA polymerase II largest subunit [Anopsobius neozelandicus]
Length = 370
Score = 246 bits (628), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 114/126 (90%), Positives = 121/126 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+++NN K MVV+G+KGS INISQVIACVGQQN
Sbjct: 118 LRQTFENQVNRILNDARDKTGSSAQKSLSDFNNFKGMVVSGAKGSKINISQVIACVGQQN 177
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 178 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 237
Query: 124 KTAETA 129
KTAET
Sbjct: 238 KTAETG 243
>gi|31127044|gb|AAF26666.2|AF139016_1 RNA polymerase II largest subunit [Milnesium tardigradum]
Length = 445
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 114/127 (89%), Positives = 121/127 (95%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+L+QTFEN VNRILNDARDKTGGSA+KSL+++NN KAMVVAGSKGS INISQVIACVGQQ
Sbjct: 192 SLRQTFENSVNRILNDARDKTGGSAQKSLSDFNNFKAMVVAGSKGSKINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFR RTLPHFI DDYGPESRGFVENSYLAGLTPSEFFFH+MGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRHRTLPHFITDDYGPESRGFVENSYLAGLTPSEFFFHSMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|405965007|gb|EKC30438.1| DNA-directed RNA polymerase II subunit RPB1 [Crassostrea gigas]
Length = 3055
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 114/125 (91%), Positives = 119/125 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN VNRILNDARDKTG A+KSL++YNN KAMVVAGSKGS INISQVIACVGQQN
Sbjct: 726 LRQTFENMVNRILNDARDKTGSKAQKSLSDYNNFKAMVVAGSKGSKINISQVIACVGQQN 785
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 786 VEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 845
Query: 124 KTAET 128
KTAET
Sbjct: 846 KTAET 850
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/91 (90%), Positives = 87/91 (95%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIINISKKPK PS
Sbjct: 1072 AQAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPS 1131
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTV+L GQAARDAEKAK+VLCRLEHTTLRKV
Sbjct: 1132 LTVYLIGQAARDAEKAKDVLCRLEHTTLRKV 1162
>gi|520509|gb|AAA50225.1| RNA polymerase II, largest subunit, partial [Crassostrea gigas]
Length = 1340
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 114/125 (91%), Positives = 119/125 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN VNRILNDARDKTG A+KSL++YNN KAMVVAGSKGS INISQVIACVGQQN
Sbjct: 644 LRQTFENMVNRILNDARDKTGSKAQKSLSDYNNFKAMVVAGSKGSKINISQVIACVGQQN 703
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 704 VEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 763
Query: 124 KTAET 128
KTAET
Sbjct: 764 KTAET 768
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/91 (90%), Positives = 87/91 (95%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIINISKKPK PS
Sbjct: 990 AQAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPS 1049
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTV+L GQAARDAEKAK+VLCRLEHTTLRKV
Sbjct: 1050 LTVYLIGQAARDAEKAKDVLCRLEHTTLRKV 1080
>gi|520513|gb|AAA50227.1| RNA polymerase II, largest subunit, partial [Helobdella stagnalis]
Length = 1337
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 113/126 (89%), Positives = 121/126 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG A+KSL+E+NN K+MVVAGSKG+ INISQVIACVGQQ
Sbjct: 639 TLRQTFENQVNRILNDARDKTGSLAQKSLSEFNNFKSMVVAGSKGNKINISQVIACVGQQ 698
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFR+RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 699 NVEGKRIPFGFRQRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTA 758
Query: 123 VKTAET 128
VKTAET
Sbjct: 759 VKTAET 764
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 79/91 (86%), Positives = 86/91 (94%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SKKP+APS
Sbjct: 986 ARVQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRAPS 1045
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTV L GQ ARDAEKAK+VLC+LEHTTLRKV
Sbjct: 1046 LTVILIGQPARDAEKAKDVLCQLEHTTLRKV 1076
>gi|6624239|dbj|BAA88484.1| RNA polymerase II largest subunit [Eptatretus burgeri]
Length = 595
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 115/125 (92%), Positives = 120/125 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVVAGSKGS INISQVIA VGQQN
Sbjct: 232 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQN 291
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 292 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 351
Query: 124 KTAET 128
KTAET
Sbjct: 352 KTAET 356
>gi|115910670|ref|XP_788781.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
3 [Strongylocentrotus purpuratus]
Length = 1921
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 114/127 (89%), Positives = 121/127 (95%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+L+QTFENQVNR+LN+ARDKTGGSA+KSL+E+NN K MVVAGSKGS INISQVIACVGQQ
Sbjct: 732 SLRQTFENQVNRLLNEARDKTGGSAQKSLSEFNNFKTMVVAGSKGSKINISQVIACVGQQ 791
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAGLTPSE FFHAMGGREGLIDTA
Sbjct: 792 NVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEMFFHAMGGREGLIDTA 851
Query: 123 VKTAETA 129
VKTAET
Sbjct: 852 VKTAETG 858
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/86 (89%), Positives = 83/86 (96%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFL 196
GEMVGALAAQSLGEPATQMTLNTFHFAGVS+KNVTLGVPRLKEIINISKKP+ PSLT FL
Sbjct: 1084 GEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKKPRTPSLTCFL 1143
Query: 197 TGQAARDAEKAKNVLCRLEHTTLRKV 222
G+AARDAE+AK++LCRLEHTTLRKV
Sbjct: 1144 LGKAARDAERAKDILCRLEHTTLRKV 1169
>gi|390363773|ref|XP_003730447.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Strongylocentrotus purpuratus]
Length = 1880
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 114/127 (89%), Positives = 121/127 (95%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+L+QTFENQVNR+LN+ARDKTGGSA+KSL+E+NN K MVVAGSKGS INISQVIACVGQQ
Sbjct: 732 SLRQTFENQVNRLLNEARDKTGGSAQKSLSEFNNFKTMVVAGSKGSKINISQVIACVGQQ 791
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAGLTPSE FFHAMGGREGLIDTA
Sbjct: 792 NVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEMFFHAMGGREGLIDTA 851
Query: 123 VKTAETA 129
VKTAET
Sbjct: 852 VKTAETG 858
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/86 (89%), Positives = 83/86 (96%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFL 196
GEMVGALAAQSLGEPATQMTLNTFHFAGVS+KNVTLGVPRLKEIINISKKP+ PSLT FL
Sbjct: 1084 GEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKKPRTPSLTCFL 1143
Query: 197 TGQAARDAEKAKNVLCRLEHTTLRKV 222
G+AARDAE+AK++LCRLEHTTLRKV
Sbjct: 1144 LGKAARDAERAKDILCRLEHTTLRKV 1169
>gi|520517|gb|AAA50229.1| RNA polymerase II, largest subunit, partial [Ilyanassa obsoleta]
Length = 1343
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 114/125 (91%), Positives = 119/125 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG A+KSL+E+NN KAMVVAGSKGS INISQVIACVGQQN
Sbjct: 647 LRQTFENQVNRILNDARDKTGSKAQKSLSEFNNFKAMVVAGSKGSKINISQVIACVGQQN 706
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
EGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 707 AEGKRIPFGFRYRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 766
Query: 124 KTAET 128
KTAET
Sbjct: 767 KTAET 771
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 85/91 (93%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIINISKKPK PS
Sbjct: 993 AQAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPS 1052
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTV+L G AARDAEK K+VLCRLEHTTLRKV
Sbjct: 1053 LTVYLNGPAARDAEKCKDVLCRLEHTTLRKV 1083
>gi|6624241|dbj|BAA88485.1| RNA polymerase II largest subunit [Lethenteron reissneri]
Length = 595
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 114/127 (89%), Positives = 120/127 (94%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVVAGSKGS INISQVIA VGQQ
Sbjct: 231 TLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQ 290
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 291 NVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTA 350
Query: 123 VKTAETA 129
VKTAET
Sbjct: 351 VKTAETG 357
>gi|156380969|ref|XP_001632039.1| predicted protein [Nematostella vectensis]
gi|156219089|gb|EDO39976.1| predicted protein [Nematostella vectensis]
Length = 1929
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 114/126 (90%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILND RDKTGGSA+KSL+E+NN KAMVVAGSKGS INISQVIA VGQQN
Sbjct: 729 LRQTFENQVNRILNDCRDKTGGSAQKSLSEFNNFKAMVVAGSKGSKINISQVIAVVGQQN 788
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 789 VEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 848
Query: 124 KTAETA 129
KT+ET
Sbjct: 849 KTSETG 854
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/92 (86%), Positives = 85/92 (92%)
Query: 131 NAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAP 190
++ PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SKKPK P
Sbjct: 1074 HSHVKPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTP 1133
Query: 191 SLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
SLTVFL GQAARDAE AK VLCRLEHTTLRKV
Sbjct: 1134 SLTVFLIGQAARDAEMAKAVLCRLEHTTLRKV 1165
>gi|194460399|gb|ACF71874.1| RNA polymerase II [Eufriesea mariana]
Length = 242
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 125 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 184
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 185 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 242
>gi|34597078|gb|AAQ77114.1| RNA polymerase II largest subunit [Lithobius forticatus]
Length = 445
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 114/127 (89%), Positives = 121/127 (95%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG SA+KSL+E+NN K+MVV+G+KGS INISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNDARDKTGSSAEKSLSEFNNFKSMVVSGAKGSKINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFCKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|194460490|gb|ACF71919.1| RNA polymerase II [Euglossa viridissima]
Length = 256
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 139 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 198
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 199 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 256
>gi|194460426|gb|ACF71887.1| RNA polymerase II [Eufriesea tucumana]
Length = 271
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 154 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 213
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 214 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 271
>gi|194460294|gb|ACF71822.1| RNA polymerase II [Eufriesea concava]
gi|194460296|gb|ACF71823.1| RNA polymerase II [Euglossa rugilabris]
gi|194460300|gb|ACF71825.1| RNA polymerase II [Euglossa occidentalis]
gi|194460309|gb|ACF71829.1| RNA polymerase II [Euglossa jamaicensis]
gi|194460317|gb|ACF71833.1| RNA polymerase II [Eufriesea violacea]
gi|194460321|gb|ACF71835.1| RNA polymerase II [Euglossa cyanura]
gi|194460327|gb|ACF71838.1| RNA polymerase II [Euglossa mandibularis]
gi|194460329|gb|ACF71839.1| RNA polymerase II [Euglossa dodsoni]
gi|194460335|gb|ACF71842.1| RNA polymerase II [Euglossa polita]
gi|194460337|gb|ACF71843.1| RNA polymerase II [Euglossa truncata]
gi|194460343|gb|ACF71846.1| RNA polymerase II [Euglossa ignita]
gi|194460351|gb|ACF71850.1| RNA polymerase II [Eulaema boliviensis]
gi|194460359|gb|ACF71854.1| RNA polymerase II [Euglossa championi]
gi|194460361|gb|ACF71855.1| RNA polymerase II [Euglossa hansoni]
gi|194460367|gb|ACF71858.1| RNA polymerase II [Eulaema cingulata]
gi|194460369|gb|ACF71859.1| RNA polymerase II [Eulaema mocsaryi]
gi|194460377|gb|ACF71863.1| RNA polymerase II [Eufriesea chrysopyga]
gi|194460389|gb|ACF71869.1| RNA polymerase II [Euglossa cybelia]
gi|194460395|gb|ACF71872.1| RNA polymerase II [Euglossa augaspis]
gi|194460404|gb|ACF71876.1| RNA polymerase II [Euglossa chlorina]
gi|194460414|gb|ACF71881.1| RNA polymerase II [Euglossa dissimula]
gi|194460420|gb|ACF71884.1| RNA polymerase II [Euglossa sp. EU47]
gi|194460428|gb|ACF71888.1| RNA polymerase II [Euglossa imperialis]
gi|194460432|gb|ACF71890.1| RNA polymerase II [Eufriesea violascens]
gi|194460442|gb|ACF71895.1| RNA polymerase II [Euglossa rufipes]
gi|194460444|gb|ACF71896.1| RNA polymerase II [Euglossa analis]
gi|194460468|gb|ACF71908.1| RNA polymerase II [Euglossa obtusa]
gi|194460474|gb|ACF71911.1| RNA polymerase II [Euglossa atroveneta]
gi|194460476|gb|ACF71912.1| RNA polymerase II [Euglossa prasina]
gi|194460488|gb|ACF71918.1| RNA polymerase II [Euglossa despecta]
gi|194460492|gb|ACF71920.1| RNA polymerase II [Euglossa villosiventris]
gi|194460506|gb|ACF71927.1| RNA polymerase II [Eulaema chocoana]
Length = 280
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 280
>gi|326672374|ref|XP_003199653.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Danio
rerio]
Length = 1921
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 114/126 (90%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVVAGSKGS INISQVIA VGQQN
Sbjct: 730 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQN 789
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 790 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 849
Query: 124 KTAETA 129
KTAET
Sbjct: 850 KTAETG 855
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/104 (79%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + ET N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1063 DWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1122
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISK+PK PSLTVFL GQAARDAE+AK++LCRLEHTTLRKV
Sbjct: 1123 ELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKV 1166
>gi|194460353|gb|ACF71851.1| RNA polymerase II [Euglossa crassipunctata]
gi|194460410|gb|ACF71879.1| RNA polymerase II [Euglossa tridentata]
Length = 276
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 159 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 218
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 219 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 276
>gi|194460315|gb|ACF71832.1| RNA polymerase II [Euglossa parvula]
Length = 277
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 160 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 219
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 220 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 277
>gi|194460393|gb|ACF71871.1| RNA polymerase II [Euglossa allosticta]
Length = 280
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 280
>gi|194460333|gb|ACF71841.1| RNA polymerase II [Euglossa melanotricha]
gi|194460418|gb|ACF71883.1| RNA polymerase II [Euglossa fuscifrons]
gi|194460454|gb|ACF71901.1| RNA polymerase II [Euglossa cordata]
gi|194460484|gb|ACF71916.1| RNA polymerase II [Euglossa liopoda]
Length = 280
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 280
>gi|194460292|gb|ACF71821.1| RNA polymerase II [Eufriesea sp. EU103]
Length = 280
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 280
>gi|194460284|gb|ACF71817.1| RNA polymerase II [Exaerete smaragdina]
gi|194460460|gb|ACF71904.1| RNA polymerase II [Eulaema nigrita]
gi|194460508|gb|ACF71928.1| RNA polymerase II [Eulaema polychroma]
Length = 280
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 280
>gi|68370162|ref|XP_682682.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Danio rerio]
Length = 1972
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 114/126 (90%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVVAGSKGS INISQVIA VGQQN
Sbjct: 730 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQN 789
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 790 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 849
Query: 124 KTAETA 129
KTAET
Sbjct: 850 KTAETG 855
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/104 (79%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + ET N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1063 DWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1122
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISK+PK PSLTVFL GQAARDAE+AK++LCRLEHTTLRKV
Sbjct: 1123 ELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKV 1166
>gi|194460345|gb|ACF71847.1| RNA polymerase II [Euglossa villosiventris]
gi|194460496|gb|ACF71922.1| RNA polymerase II [Euglossa bidentata]
Length = 277
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 160 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 219
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 220 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 277
>gi|443728942|gb|ELU15060.1| hypothetical protein CAPTEDRAFT_170227 [Capitella teleta]
Length = 1916
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 113/126 (89%), Positives = 121/126 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG +A+KSL+E+N+ KAMVVAGSKG+ INISQVIACVGQQN
Sbjct: 731 LRQTFENQVNRILNDARDKTGSTAQKSLSEFNSFKAMVVAGSKGNKINISQVIACVGQQN 790
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 791 VEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 850
Query: 124 KTAETA 129
KTAET
Sbjct: 851 KTAETG 856
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 86/91 (94%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEM GALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SKKPK PS
Sbjct: 1077 AMTQPGEMCGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPS 1136
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG+AA+DAEKAK+VLCRLEHTTLRKV
Sbjct: 1137 LTVFLTGKAAKDAEKAKDVLCRLEHTTLRKV 1167
>gi|194460408|gb|ACF71878.1| RNA polymerase II [Euglossa laevicincta]
gi|194460498|gb|ACF71923.1| RNA polymerase II [Euglossa bursigera]
Length = 279
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 162 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 221
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 222 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 279
>gi|194460486|gb|ACF71917.1| RNA polymerase II [Exaerete throcanterica]
Length = 274
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 157 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 216
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 217 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 274
>gi|194460288|gb|ACF71819.1| RNA polymerase II [Euglossa paisa]
Length = 280
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 280
>gi|47214041|emb|CAG00699.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1745
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 114/125 (91%), Positives = 120/125 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVVAGSKGS INISQVIA VGQQN
Sbjct: 601 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQN 660
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 661 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 720
Query: 124 KTAET 128
KTAET
Sbjct: 721 KTAET 725
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/104 (79%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + ET N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 975 DWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1034
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISK+PK PSLTVFL GQAARDAE+AK++LCRLEHTTLRKV
Sbjct: 1035 ELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKV 1078
>gi|348523738|ref|XP_003449380.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Oreochromis niloticus]
Length = 1966
Score = 243 bits (621), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 114/127 (89%), Positives = 120/127 (94%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVVAGSKGS INISQVIA VGQQ
Sbjct: 730 TLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQ 789
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 790 NVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTA 849
Query: 123 VKTAETA 129
VKTAET
Sbjct: 850 VKTAETG 856
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/104 (79%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + ET N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1064 DWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1123
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISK+PK PSLTVFL GQAARDAE+AK++LCRLEHTTLRKV
Sbjct: 1124 ELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKV 1167
>gi|194460458|gb|ACF71903.1| RNA polymerase II [Euglossa crininota]
Length = 275
Score = 243 bits (621), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 158 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 217
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 218 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 275
>gi|339252982|ref|XP_003371714.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
gi|316967997|gb|EFV52341.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
Length = 1816
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 113/125 (90%), Positives = 118/125 (94%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+ TFEN VNRILNDARDKTG SA++SL+E+NN KAMVVAGSKGS INISQVIACVGQQN
Sbjct: 715 LRDTFENSVNRILNDARDKTGASAQRSLSEFNNFKAMVVAGSKGSKINISQVIACVGQQN 774
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFH MGGREGLIDTAV
Sbjct: 775 VEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHTMGGREGLIDTAV 834
Query: 124 KTAET 128
KTAET
Sbjct: 835 KTAET 839
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 64/97 (65%), Gaps = 27/97 (27%)
Query: 127 ETACN-AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK 185
ET N A+ PGEMVGAL+A SLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN
Sbjct: 1055 ETRFNLAQVQPGEMVGALSALSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIIN--- 1111
Query: 186 KPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+VLCR+E TTL+KV
Sbjct: 1112 -----------------------DVLCRIEQTTLKKV 1125
>gi|194460502|gb|ACF71925.1| RNA polymerase II [Euglossa macrorhyncha]
Length = 280
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 280
>gi|194460472|gb|ACF71910.1| RNA polymerase II [Euglossa hemichlora]
Length = 277
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 160 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 219
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 220 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 277
>gi|194460286|gb|ACF71818.1| RNA polymerase II [Eufriesea rufocauda]
Length = 280
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 280
>gi|194460349|gb|ACF71849.1| RNA polymerase II [Euglossa piliventris]
Length = 274
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 157 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 216
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 217 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 274
>gi|194460500|gb|ACF71924.1| RNA polymerase II [Euglossa tridentata]
Length = 280
Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 280
>gi|194460341|gb|ACF71845.1| RNA polymerase II [Euglossa flammea]
gi|194460450|gb|ACF71899.1| RNA polymerase II [Euglossa erythrochlora]
Length = 280
Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 280
>gi|410906965|ref|XP_003966962.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like,
partial [Takifugu rubripes]
Length = 1628
Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 114/126 (90%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVVAGSKGS INISQVIA VGQQN
Sbjct: 731 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQN 790
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 791 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 850
Query: 124 KTAETA 129
KTAET
Sbjct: 851 KTAETG 856
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/104 (79%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + ET N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1064 DWLLGEIETKFNHSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1123
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISK+PK PSLTVFL GQAARDAE+AK++LCRLEHTTLRKV
Sbjct: 1124 ELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKV 1167
>gi|194460406|gb|ACF71877.1| RNA polymerase II [Euglossa turbinifex]
Length = 273
Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 156 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 215
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 216 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 273
>gi|432920271|ref|XP_004079921.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Oryzias latipes]
Length = 1599
Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 114/126 (90%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVVAGSKGS INISQVIA VGQQN
Sbjct: 731 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQN 790
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 791 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 850
Query: 124 KTAETA 129
KTAET
Sbjct: 851 KTAETG 856
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/104 (79%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + ET N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1064 DWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1123
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISK+PK PSLTVFL GQAARDAE+AK++LCRLEHTTLRKV
Sbjct: 1124 ELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKV 1167
>gi|31127032|gb|AAF26647.2|AF138997_1 RNA polymerase II largest subunit [Cypridopsis vidua]
Length = 624
Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 117/127 (92%), Positives = 119/127 (93%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFEN VNRILNDARDKTG SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 371 TLRQTFENMVNRILNDARDKTGSSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 430
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIK PESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 431 NVEGKRIPFGFRKRTLPHFIKXXXXPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 490
Query: 123 VKTAETA 129
VKTAET
Sbjct: 491 VKTAETG 497
>gi|119610589|gb|EAW90183.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
CRA_c [Homo sapiens]
Length = 1549
Score = 242 bits (618), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 112/125 (89%), Positives = 120/125 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 312 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 371
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 372 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 431
Query: 124 KTAET 128
KTAET
Sbjct: 432 KTAET 436
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 79/91 (86%), Positives = 86/91 (94%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PS
Sbjct: 658 AIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPS 717
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 718 LTVFLLGQSARDAERAKDILCRLEHTTLRKV 748
>gi|119610588|gb|EAW90182.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
CRA_b [Homo sapiens]
Length = 1511
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 112/125 (89%), Positives = 120/125 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 312 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 371
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 372 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 431
Query: 124 KTAET 128
KTAET
Sbjct: 432 KTAET 436
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 79/91 (86%), Positives = 86/91 (94%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PS
Sbjct: 658 AIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPS 717
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 718 LTVFLLGQSARDAERAKDILCRLEHTTLRKV 748
>gi|194460401|gb|ACF71875.1| RNA polymerase II [Euglossa ioprosopa]
Length = 280
Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 113/118 (95%), Positives = 116/118 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGG AKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGXAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 280
>gi|308468219|ref|XP_003096353.1| CRE-AMA-1 protein [Caenorhabditis remanei]
gi|308243268|gb|EFO87220.1| CRE-AMA-1 protein [Caenorhabditis remanei]
Length = 1853
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 111/126 (88%), Positives = 121/126 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VN+ILNDARD+TG SA+KSL+E+NN K+MVV+GSKGS INISQVIACVGQQN
Sbjct: 727 LRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 846
Query: 124 KTAETA 129
KTAET
Sbjct: 847 KTAETG 852
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/91 (84%), Positives = 85/91 (93%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK+ K PS
Sbjct: 1073 AIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPS 1132
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AA+DAEKAK+VLC+LEHTTL+KV
Sbjct: 1133 LTVFLTGAAAKDAEKAKDVLCKLEHTTLKKV 1163
>gi|156405|gb|AAA28126.1| RNA polymerase II [Caenorhabditis elegans]
Length = 1859
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 111/126 (88%), Positives = 121/126 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VN+ILNDARD+TG SA+KSL+E+NN K+MVV+GSKGS INISQVIACVGQQN
Sbjct: 723 LRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQN 782
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 783 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 842
Query: 124 KTAETA 129
KTAET
Sbjct: 843 KTAETG 848
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/88 (82%), Positives = 80/88 (90%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK K PS
Sbjct: 1079 AIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPS 1138
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTL 219
LTVFLTG AA+D EKAK+VLC+LEHTT+
Sbjct: 1139 LTVFLTGAAAKDPEKAKDVLCKLEHTTV 1166
>gi|392898787|ref|NP_500523.4| Protein AMA-1 [Caenorhabditis elegans]
gi|380865455|sp|P16356.3|RPB1_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|351061691|emb|CCD69532.1| Protein AMA-1 [Caenorhabditis elegans]
Length = 1856
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 111/126 (88%), Positives = 121/126 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VN+ILNDARD+TG SA+KSL+E+NN K+MVV+GSKGS INISQVIACVGQQN
Sbjct: 727 LRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 846
Query: 124 KTAETA 129
KTAET
Sbjct: 847 KTAETG 852
Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 76/91 (83%), Positives = 83/91 (91%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK K PS
Sbjct: 1073 AIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPS 1132
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AA+D EKAK+VLC+LEHTTL+KV
Sbjct: 1133 LTVFLTGAAAKDPEKAKDVLCKLEHTTLKKV 1163
>gi|268553547|ref|XP_002634760.1| C. briggsae CBR-RPB-1 protein [Caenorhabditis briggsae]
gi|60393735|sp|P35074.2|RPB1_CAEBR RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
Length = 1853
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 111/126 (88%), Positives = 121/126 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VN+ILNDARD+TG SA+KSL+E+NN K+MVV+GSKGS INISQVIACVGQQN
Sbjct: 727 LRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 846
Query: 124 KTAETA 129
KTAET
Sbjct: 847 KTAETG 852
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 76/91 (83%), Positives = 84/91 (92%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK+ K PS
Sbjct: 1073 AIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPS 1132
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AA+D EKAK+VLC+LEHTTL+KV
Sbjct: 1133 LTVFLTGAAAKDPEKAKDVLCKLEHTTLKKV 1163
>gi|194460325|gb|ACF71837.1| RNA polymerase II [Euglossa variabilis]
Length = 279
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 113/117 (96%), Positives = 116/117 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLI 119
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLI
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI 279
>gi|395748505|ref|XP_002827010.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Pongo abelii]
Length = 1967
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/104 (78%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1066 DWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1125
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISKKPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1126 ELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|109488292|ref|XP_343923.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Rattus norvegicus]
gi|109491096|ref|XP_001079162.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Rattus norvegicus]
Length = 1970
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1142
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1143 LLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|395533542|ref|XP_003768816.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sarcophilus
harrisii]
Length = 1921
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1142
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1143 LLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|296201388|ref|XP_002748007.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Callithrix jacchus]
Length = 1937
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 700 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 759
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 760 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 819
Query: 124 KTAETA 129
KTAET
Sbjct: 820 KTAETG 825
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1050 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1109
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1110 LLGQSARDAERAKDILCRLEHTTLRKV 1136
>gi|390462987|ref|XP_003732945.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Callithrix jacchus]
Length = 1899
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/127 (88%), Positives = 120/127 (94%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQ
Sbjct: 699 TLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ 758
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 759 NVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTA 818
Query: 123 VKTAETA 129
VKTAET
Sbjct: 819 VKTAETG 825
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1050 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1109
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1110 LLGQSARDAERAKDILCRLEHTTLRKV 1136
>gi|344290440|ref|XP_003416946.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Loxodonta
africana]
Length = 1970
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/104 (78%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1066 DWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1125
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISKKPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1126 ELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|126309152|ref|XP_001364837.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Monodelphis domestica]
Length = 1970
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1142
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1143 LLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|2443334|dbj|BAA22376.1| RNA polymerase II largest subunit [Cricetulus griseus]
Length = 1970
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1142
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1143 LLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|345800197|ref|XP_857844.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 isoform 3 [Canis lupus familiaris]
Length = 1970
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/104 (78%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1066 DWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1125
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISKKPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1126 ELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|825713|emb|CAA52862.1| RNA polymerase II largest subunit [Homo sapiens]
Length = 1970
Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1142
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1143 LLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|327287678|ref|XP_003228555.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Anolis
carolinensis]
Length = 1969
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 732 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 791
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 792 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 851
Query: 124 KTAETA 129
KTAET
Sbjct: 852 KTAETG 857
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 88/133 (66%), Positives = 100/133 (75%), Gaps = 14/133 (10%)
Query: 90 SRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETACNAKCAPGEMVGALAAQSLG 149
SR +E L+G E F +G E + A+ PGEMVGALAAQSLG
Sbjct: 1050 SRRMIEEFRLSG----EAFDWLLGEIESKFNQAI----------AHPGEMVGALAAQSLG 1095
Query: 150 EPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAARDAEKAKN 209
EPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVFL GQ+ARDAE+AK+
Sbjct: 1096 EPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKD 1155
Query: 210 VLCRLEHTTLRKV 222
+LCRLEHTTLRKV
Sbjct: 1156 ILCRLEHTTLRKV 1168
>gi|432105605|gb|ELK31799.1| DNA-directed RNA polymerase II subunit RPB1 [Myotis davidii]
Length = 1970
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1142
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1143 LLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|402898581|ref|XP_003912299.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Papio
anubis]
Length = 1970
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1142
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1143 LLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|351701567|gb|EHB04486.1| DNA-directed RNA polymerase II subunit RPB1 [Heterocephalus glaber]
gi|417406836|gb|JAA50059.1| Putative rna polymerase i large subunit [Desmodus rotundus]
Length = 1970
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1142
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1143 LLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|281185484|sp|P24928.2|RPB1_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase II subunit A; AltName:
Full=DNA-directed RNA polymerase III largest subunit;
AltName: Full=RNA-directed RNA polymerase II subunit
RPB1
Length = 1970
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1142
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1143 LLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|329663165|ref|NP_001193242.1| DNA-directed RNA polymerase II subunit RPB1 [Bos taurus]
Length = 1970
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1142
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1143 LLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|4505939|ref|NP_000928.1| DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]
gi|345842509|ref|NP_001230931.1| polymerase (RNA) II (DNA directed) polypeptide A [Cricetulus
griseus]
gi|332251063|ref|XP_003274666.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Nomascus
leucogenys]
gi|403274932|ref|XP_003929214.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Saimiri
boliviensis boliviensis]
gi|36124|emb|CAA45125.1| RNA polymerase II largest subunit [Homo sapiens]
gi|2443336|dbj|BAA22377.1| RNA polymerase II largest subunit [Cricetulus griseus]
gi|14328881|dbj|BAB60684.1| RNA polymerase II largest subunit [Cricetulus griseus]
gi|119610587|gb|EAW90181.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
CRA_a [Homo sapiens]
gi|223460954|gb|AAI37232.1| Polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Homo
sapiens]
Length = 1970
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1142
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1143 LLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|301778185|ref|XP_002924473.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Ailuropoda melanoleuca]
Length = 1970
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1142
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1143 LLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|281352199|gb|EFB27783.1| hypothetical protein PANDA_013866 [Ailuropoda melanoleuca]
Length = 1989
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 738 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 797
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 798 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 857
Query: 124 KTAETA 129
KTAET
Sbjct: 858 KTAETG 863
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/104 (78%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1071 DWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1130
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISKKPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1131 ELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1174
>gi|2145091|gb|AAB58418.1| RNA polymerase II largest subunit [Mus musculus]
Length = 1966
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/104 (78%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1066 DWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1125
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISKKPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1126 ELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|395836506|ref|XP_003791195.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Otolemur
garnettii]
Length = 1970
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/104 (78%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1066 DWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1125
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISKKPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1126 ELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|133327|sp|P08775.3|RPB1_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase II subunit A; AltName:
Full=DNA-directed RNA polymerase III largest subunit
Length = 1970
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1142
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1143 LLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|341894670|gb|EGT50605.1| hypothetical protein CAEBREN_32550 [Caenorhabditis brenneri]
Length = 1713
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 111/126 (88%), Positives = 121/126 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VN+ILNDARD+TG SA+KSL+E+NN K+MVV+GSKGS INISQVIACVGQQN
Sbjct: 727 LRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 846
Query: 124 KTAETA 129
KTAET
Sbjct: 847 KTAETG 852
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 76/91 (83%), Positives = 84/91 (92%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK+ K PS
Sbjct: 1092 AIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPS 1151
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AA+D EKAK+VLC+LEHTTL+KV
Sbjct: 1152 LTVFLTGPAAKDPEKAKDVLCKLEHTTLKKV 1182
>gi|126309154|ref|XP_001364909.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Monodelphis domestica]
Length = 1932
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/127 (88%), Positives = 120/127 (94%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQ
Sbjct: 732 TLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ 791
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 792 NVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTA 851
Query: 123 VKTAETA 129
VKTAET
Sbjct: 852 VKTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1142
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1143 LLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|293340189|ref|XP_002724554.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Rattus norvegicus]
gi|293351610|ref|XP_002727769.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Rattus norvegicus]
Length = 1932
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/127 (88%), Positives = 120/127 (94%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQ
Sbjct: 732 TLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ 791
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 792 NVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTA 851
Query: 123 VKTAETA 129
VKTAET
Sbjct: 852 VKTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1142
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1143 LLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|444722932|gb|ELW63604.1| DNA-directed RNA polymerase II subunit RPB1 [Tupaia chinensis]
Length = 1801
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 774 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 833
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 834 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 893
Query: 124 KTAETA 129
KTAET
Sbjct: 894 KTAETG 899
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/104 (78%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1107 DWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1166
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISKKPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1167 ELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1210
>gi|431894008|gb|ELK03814.1| DNA-directed RNA polymerase II subunit RPB1 [Pteropus alecto]
Length = 1975
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 738 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 797
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 798 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 857
Query: 124 KTAETA 129
KTAET
Sbjct: 858 KTAETG 863
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1088 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1147
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1148 LLGQSARDAERAKDILCRLEHTTLRKV 1174
>gi|332847192|ref|XP_511300.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Pan
troglodytes]
Length = 1907
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1142
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1143 LLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|426383941|ref|XP_004058535.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Gorilla gorilla gorilla]
Length = 1883
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/104 (78%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1066 DWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1125
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISKKPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1126 ELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|6677795|ref|NP_033115.1| DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]
gi|200794|gb|AAA40071.1| RNA polymerase II [Mus musculus]
Length = 1932
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1142
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1143 LLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|296476824|tpg|DAA18939.1| TPA: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Bos
taurus]
Length = 1323
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/127 (88%), Positives = 120/127 (94%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQ
Sbjct: 732 TLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ 791
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 792 NVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTA 851
Query: 123 VKTAETA 129
VKTAET
Sbjct: 852 VKTAETG 858
Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 82/104 (78%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1066 DWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1125
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISKKPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1126 ELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|301628367|ref|XP_002943327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like,
partial [Xenopus (Silurana) tropicalis]
Length = 1946
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/127 (88%), Positives = 120/127 (94%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQ
Sbjct: 708 TLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ 767
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 768 NVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTA 827
Query: 123 VKTAETA 129
VKTAET
Sbjct: 828 VKTAETG 834
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 100/133 (75%), Gaps = 14/133 (10%)
Query: 90 SRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETACNAKCAPGEMVGALAAQSLG 149
SR VE L+G E F +G E + AV PGEMVGALAAQSLG
Sbjct: 1027 SRRMVEEFRLSG----EAFDWLLGEIESKFNQAV----------AHPGEMVGALAAQSLG 1072
Query: 150 EPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAARDAEKAKN 209
EPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVFL GQ+ARDAE+AK+
Sbjct: 1073 EPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKD 1132
Query: 210 VLCRLEHTTLRKV 222
+LCRLEHTTLRKV
Sbjct: 1133 ILCRLEHTTLRKV 1145
>gi|397477903|ref|XP_003846225.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Pan paniscus]
Length = 1719
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/104 (78%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1066 DWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1125
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISKKPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1126 ELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|355568192|gb|EHH24473.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca mulatta]
gi|355753712|gb|EHH57677.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca fascicularis]
Length = 1629
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 743 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 802
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 803 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 862
Query: 124 KTAETA 129
KTAET
Sbjct: 863 KTAETG 868
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/104 (78%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1076 DWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1135
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISKKPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1136 ELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1179
>gi|426383939|ref|XP_004058534.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Gorilla gorilla gorilla]
Length = 1921
Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/104 (78%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1066 DWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1125
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISKKPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1126 ELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|426238812|ref|XP_004013338.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Ovis aries]
Length = 1897
Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/104 (78%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1066 DWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1125
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISKKPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1126 ELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|410979885|ref|XP_003996311.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Felis
catus]
Length = 1817
Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/104 (78%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1066 DWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1125
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISKKPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1126 ELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|326899907|gb|AAF26627.3|AF138977_1 RNA polymerase II largest subunit [Eurytemora affinis]
Length = 445
Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 113/127 (88%), Positives = 119/127 (93%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFEN VNRI NDARDKTGGSAK+SLTE+NN K MVVAGSKGS+IN+SQVIACVGQQ
Sbjct: 192 TLRQTFENXVNRIXNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRK TLPHFIKD YGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTA
Sbjct: 252 NVEGKRIPFGFRKXTLPHFIKDXYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 311
Query: 123 VKTAETA 129
VKTAET
Sbjct: 312 VKTAETG 318
>gi|350590849|ref|XP_003483150.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sus scrofa]
Length = 1092
Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 112/127 (88%), Positives = 120/127 (94%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQ
Sbjct: 732 TLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ 791
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 792 NVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTA 851
Query: 123 VKTAETA 129
VKTAET
Sbjct: 852 VKTAETG 858
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 75/91 (82%)
Query: 118 LIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRL 177
+I A K PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRL
Sbjct: 986 MIWNAQKIXXXXXXXXAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRL 1045
Query: 178 KEIINISKKPKAPSLTVFLTGQAARDAEKAK 208
KE+INISKKPK PSLTVFL GQ+ARDAE+AK
Sbjct: 1046 KELINISKKPKTPSLTVFLLGQSARDAERAK 1076
>gi|194217622|ref|XP_001918406.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Equus caballus]
Length = 1834
Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/104 (78%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1066 DWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1125
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISKKPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1126 ELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|194460510|gb|ACF71929.1| RNA polymerase II [Eufriesea anisochlora]
Length = 280
Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 113/118 (95%), Positives = 116/118 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT SEF+FHAMGGREGLID
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTTSEFYFHAMGGREGLID 280
>gi|380793277|gb|AFE68514.1| DNA-directed RNA polymerase II subunit RPB1, partial [Macaca
mulatta]
Length = 1658
Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/104 (78%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1066 DWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1125
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISKKPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1126 ELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1169
>gi|216296571|gb|ACJ72070.1| RNA polymerase II largest subunit [Trichoplax adhaerens]
Length = 625
Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 112/127 (88%), Positives = 119/127 (93%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L++TFENQVNRILNDARDKTG SA+KSL+ +NN KAMVVAGSKGS INISQVIA VGQQ
Sbjct: 259 TLRKTFENQVNRILNDARDKTGSSAQKSLSNFNNFKAMVVAGSKGSKINISQVIAVVGQQ 318
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFR RTLPHFI+DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 319 NVEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTA 378
Query: 123 VKTAETA 129
VKTAET
Sbjct: 379 VKTAETG 385
>gi|345309516|ref|XP_003428845.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1, partial
[Ornithorhynchus anatinus]
Length = 988
Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 112/127 (88%), Positives = 120/127 (94%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQ
Sbjct: 699 TLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ 758
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 759 NVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTA 818
Query: 123 VKTAETA 129
VKTAET
Sbjct: 819 VKTAETG 825
>gi|297271809|ref|XP_001118060.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Macaca
mulatta]
Length = 1097
Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 112/127 (88%), Positives = 120/127 (94%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQ
Sbjct: 732 TLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ 791
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 792 NVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTA 851
Query: 123 VKTAETA 129
VKTAET
Sbjct: 852 VKTAETG 858
>gi|194389262|dbj|BAG65619.1| unnamed protein product [Homo sapiens]
Length = 1935
Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 111/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 698 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 757
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFI+DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 758 VEGKRIPFGFKHRTLPHFIEDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 817
Query: 124 KTAETA 129
KTAET
Sbjct: 818 KTAETG 823
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/104 (78%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLK
Sbjct: 1031 DWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1090
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
E+INISKKPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1091 ELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1134
>gi|194460347|gb|ACF71848.1| RNA polymerase II [Euglossa igniventris]
Length = 274
Score = 239 bits (610), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 112/116 (96%), Positives = 115/116 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 159 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 218
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGL 118
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGL
Sbjct: 219 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGL 274
>gi|195996443|ref|XP_002108090.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
gi|190588866|gb|EDV28888.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
Length = 1784
Score = 239 bits (610), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 112/127 (88%), Positives = 119/127 (93%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L++TFENQVNRILNDARDKTG SA+KSL+ +NN KAMVVAGSKGS INISQVIA VGQQ
Sbjct: 720 TLRKTFENQVNRILNDARDKTGSSAQKSLSNFNNFKAMVVAGSKGSKINISQVIAVVGQQ 779
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFR RTLPHFI+DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 780 NVEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTA 839
Query: 123 VKTAETA 129
VKTAET
Sbjct: 840 VKTAETG 846
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/91 (86%), Positives = 84/91 (92%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
+ PGEMVG LAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SKKPK PS
Sbjct: 1058 GEVQPGEMVGPLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPS 1117
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTV LTG AARDAEKAK+VLCRLEHTTLRKV
Sbjct: 1118 LTVILTGPAARDAEKAKDVLCRLEHTTLRKV 1148
>gi|340368153|ref|XP_003382617.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Amphimedon queenslandica]
Length = 1933
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 110/126 (87%), Positives = 119/126 (94%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILN+ARDKTG SA++SL+E+NN K MV AGSKGS INISQVIACVGQQN
Sbjct: 727 LRQTFENQVNRILNEARDKTGSSAQRSLSEFNNFKIMVTAGSKGSKINISQVIACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPNEFFFHAMGGREGLIDTAV 846
Query: 124 KTAETA 129
KT+ET
Sbjct: 847 KTSETG 852
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 84/91 (92%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SKKPK PS
Sbjct: 1073 AHVQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPS 1132
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LT+FL GQAARDAEK K+VLCR+EHTTL KV
Sbjct: 1133 LTIFLLGQAARDAEKCKDVLCRIEHTTLSKV 1163
>gi|194460422|gb|ACF71885.1| RNA polymerase II [Euglossa igniventris]
Length = 277
Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 111/115 (96%), Positives = 114/115 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREG 117
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREG
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREG 277
>gi|194460355|gb|ACF71852.1| RNA polymerase II [Euglossa asarophora]
Length = 272
Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 111/115 (96%), Positives = 114/115 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 158 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 217
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREG 117
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREG
Sbjct: 218 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREG 272
>gi|194460504|gb|ACF71926.1| RNA polymerase II [Eulaema sororia]
Length = 280
Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 111/118 (94%), Positives = 114/118 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINIS VIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISHVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
N EGKRIPFGFRKRTLPHFIK DYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 223 NAEGKRIPFGFRKRTLPHFIKXDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 280
>gi|256082852|ref|XP_002577666.1| DNA-directed RNA polymerase II largest subunit [Schistosoma
mansoni]
Length = 1785
Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 109/126 (86%), Positives = 117/126 (92%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN VN+ILNDARDKTG A++SL++YNN MVVAGSKGS INISQVIACVGQQN
Sbjct: 623 LRQTFENSVNKILNDARDKTGSCAQRSLSKYNNFNIMVVAGSKGSRINISQVIACVGQQN 682
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFI+DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 683 VEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 742
Query: 124 KTAETA 129
KTAET
Sbjct: 743 KTAETG 748
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/101 (77%), Positives = 89/101 (88%), Gaps = 3/101 (2%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK+PK PS
Sbjct: 969 AHIHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPS 1028
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVL---YIILRP 229
+T+FLTGQAARDAE+ K+V+ RLEHTTLRK++ YI P
Sbjct: 1029 MTIFLTGQAARDAERTKDVVARLEHTTLRKLVNSTYIYYDP 1069
>gi|358337430|dbj|GAA28785.2| DNA-directed RNA polymerase II subunit RPB1 [Clonorchis sinensis]
Length = 1877
Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 109/126 (86%), Positives = 117/126 (92%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN VN+ILNDARDKTG A++SL++YNN MVVAGSKGS INISQVIACVGQQN
Sbjct: 693 LRQTFENSVNKILNDARDKTGSCAQRSLSKYNNFNIMVVAGSKGSRINISQVIACVGQQN 752
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFI+DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 753 VEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 812
Query: 124 KTAETA 129
KTAET
Sbjct: 813 KTAETG 818
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/101 (75%), Positives = 89/101 (88%), Gaps = 3/101 (2%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SKKPK PS
Sbjct: 1039 AQIHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPS 1098
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVL---YIILRP 229
+T++LTG AARDAE+ K+V+ RLEHTTLR+++ YI P
Sbjct: 1099 MTIYLTGPAARDAERTKDVVARLEHTTLRRLVNSTYIYYDP 1139
>gi|194460365|gb|ACF71857.1| RNA polymerase II [Euglossa heterosticta]
Length = 279
Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 112/117 (95%), Positives = 115/117 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLI 119
NVEGKRIPFGFRKRTLPHFIKDDYG ESRGFVENSYLAGLTPSEF+FHAMGGREGLI
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGFESRGFVENSYLAGLTPSEFYFHAMGGREGLI 279
>gi|353231921|emb|CCD79276.1| putative dna-directed RNA polymerase II largest subunit
[Schistosoma mansoni]
Length = 1900
Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 109/126 (86%), Positives = 117/126 (92%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN VN+ILNDARDKTG A++SL++YNN MVVAGSKGS INISQVIACVGQQN
Sbjct: 738 LRQTFENSVNKILNDARDKTGSCAQRSLSKYNNFNIMVVAGSKGSRINISQVIACVGQQN 797
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFI+DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 798 VEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 857
Query: 124 KTAETA 129
KTAET
Sbjct: 858 KTAETG 863
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/101 (77%), Positives = 89/101 (88%), Gaps = 3/101 (2%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK+PK PS
Sbjct: 1084 AHIHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPS 1143
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVL---YIILRP 229
+T+FLTGQAARDAE+ K+V+ RLEHTTLRK++ YI P
Sbjct: 1144 MTIFLTGQAARDAERTKDVVARLEHTTLRKLVNSTYIYYDP 1184
>gi|316997013|dbj|BAJ52634.1| RNA polymerase II largest subunit [Ephydatia fluviatilis]
Length = 1146
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 108/126 (85%), Positives = 119/126 (94%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILN+ARDKTG SA+KSL+++NN K MV AGSKGS INISQVIACVGQQN
Sbjct: 232 LRQTFENQVNRILNEARDKTGSSAQKSLSDFNNFKVMVSAGSKGSKINISQVIACVGQQN 291
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDD+GPES+GFVENSYLAGLTP+EF+FHAMGGREGLIDTAV
Sbjct: 292 VEGKRIPFGFRHRTLPHFIKDDFGPESKGFVENSYLAGLTPTEFYFHAMGGREGLIDTAV 351
Query: 124 KTAETA 129
KT+ET
Sbjct: 352 KTSETG 357
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/91 (81%), Positives = 85/91 (93%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK+PK PS
Sbjct: 581 AQAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPS 640
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LT+FL GQAA+ AE+ K+VLCR+E+TTLRKV
Sbjct: 641 LTIFLKGQAAKGAERCKDVLCRIEYTTLRKV 671
>gi|194460466|gb|ACF71907.1| RNA polymerase II [Eufriesea magrettii]
Length = 277
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 110/115 (95%), Positives = 113/115 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRI NDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRIXNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREG 117
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREG
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREG 277
>gi|283836884|emb|CAX52889.1| RNA polymerase II large subunit [Pseudoleptonema quinquefasciatum]
Length = 257
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991619|emb|CAX37930.1| RNA polymerase II [Asmicridea grisea]
gi|269992365|emb|CAX51705.1| RNA polymerase II [Asmicridea edwardsii]
gi|283836878|emb|CAX52858.1| RNA polymerase II large subunit [Asmicridea edwardsii]
Length = 257
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417144|emb|CBI70602.1| RNA polymerase II [Phryganea grandis]
Length = 257
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991451|emb|CAX37855.1| RNA polymerase II [Diplectrona zealandensis]
Length = 257
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417268|emb|CBI70664.1| RNA polymerase II [Poecilopsyche vidura]
Length = 148
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/112 (97%), Positives = 112/112 (100%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 37 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 96
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 97 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 148
>gi|309755794|gb|ADO86731.1| RNA polymerase II [Agmina vuegi]
Length = 257
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991435|emb|CAX37847.1| RNA polymerase II [Chimarra marginata]
Length = 257
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417180|emb|CBI70620.1| RNA polymerase II [Ceraclea dissimilis]
Length = 257
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/112 (97%), Positives = 112/112 (100%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 146 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 205
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 206 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755840|gb|ADO86754.1| RNA polymerase II [Agmina sp. 4 ME-2010]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755580|gb|ADO86624.1| RNA polymerase II [Agmina sp. 37 ME-2010]
gi|309755690|gb|ADO86679.1| RNA polymerase II [Agmina sp. 37 ME-2010]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991483|emb|CAX37871.1| RNA polymerase II [Abacaria caledona]
gi|269991617|emb|CAX37929.1| RNA polymerase II [Diplectrona castanea]
gi|289779523|emb|CAX52805.1| RNA polymerase II large subunit [Abacaria caledona]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|283549577|emb|CAX62868.1| RNA polymerase 2 [Eosericostoma inaequispinum]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|283549569|emb|CAX62864.1| RNA polymerase 2 [Philanisus plebeius]
gi|283549595|emb|CAX62877.1| RNA polymerase 2 [Chathamia integripennis]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|283549565|emb|CAX62862.1| RNA polymerase 2 [Pycnocentrella eruensis]
gi|283549571|emb|CAX62865.1| RNA polymerase 2 [Pycnocentrella eruensis]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|283549561|emb|CAX62860.1| RNA polymerase 2 [Alloecentrella sp. BP8]
gi|283549573|emb|CAX62866.1| RNA polymerase 2 [Periwinkla childi]
gi|283549591|emb|CAX62875.1| RNA polymerase 2 [Caloca ascita]
gi|283549601|emb|CAX62880.1| RNA polymerase 2 [Costora seposita]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417338|emb|CBI70699.1| RNA polymerase II [Marilia elongata]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417254|emb|CBI70657.1| RNA polymerase II [Trichosetodes sisyphos]
Length = 148
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/112 (97%), Positives = 112/112 (100%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 37 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 96
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 97 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 148
>gi|283836872|emb|CAX52817.1| RNA polymerase II large subunit [Moruya charadra]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991433|emb|CAX37846.1| RNA polymerase II [Hydropsyche siltalai]
gi|269991441|emb|CAX37850.1| RNA polymerase II [Aoteapsyche raruraru]
gi|269991443|emb|CAX37851.1| RNA polymerase II [Aoteapsyche cf. tipua BR7]
gi|269991445|emb|CAX37852.1| RNA polymerase II [Orthopsyche fimbriata]
gi|269991599|emb|CAX37920.1| RNA polymerase II [Hydropsyche sp. EX3]
gi|269991607|emb|CAX37924.1| RNA polymerase II [Hydropsyche yenisar]
gi|269992357|emb|CAX51704.1| RNA polymerase II [Aoteapsyche philpotti]
gi|283836866|emb|CAX52785.1| RNA polymerase II large subunit [Aoteapsyche philpotti]
gi|283836876|emb|CAX52829.1| RNA polymerase II large subunit [Polymorphanisus similis]
gi|289779485|emb|CAX52784.1| RNA polymerase II large subunit [Aoteapsyche raruraru]
gi|289779489|emb|CAX52787.1| RNA polymerase II large subunit [Aoteapsyche cf. tipua BR7]
gi|289779491|emb|CAX52789.1| RNA polymerase II large subunit [Orthopsyche fimbriata]
gi|289779607|emb|CAX52851.1| RNA polymerase II large subunit [Austrotinodes triangularis]
gi|289779669|emb|CAX52885.1| RNA polymerase II large subunit [Hydropsyche sp. EX3]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|283836874|emb|CAX52819.1| RNA polymerase II large subunit [Synoestropsis grisoli]
gi|289779561|emb|CAX52827.1| RNA polymerase II large subunit [Dipseudopsis africana]
gi|289779563|emb|CAX52828.1| RNA polymerase II large subunit [Protodipseudopsis sp. EI8]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991437|emb|CAX37848.1| RNA polymerase II [Aoteapsyche tepoka]
gi|269991439|emb|CAX37849.1| RNA polymerase II [Aoteapsyche colonica]
gi|269991453|emb|CAX37856.1| RNA polymerase II [Orthopsyche schefterae]
gi|269991455|emb|CAX37857.1| RNA polymerase II [Orthopsyche kina]
gi|269991457|emb|CAX37858.1| RNA polymerase II [Orthopsyche imbah]
gi|269991463|emb|CAX37861.1| RNA polymerase II [Orthopsyche vrupama]
gi|269991465|emb|CAX37862.1| RNA polymerase II [Orthopsyche vrupama]
gi|269991467|emb|CAX37863.1| RNA polymerase II [Orthopsyche nadauna]
gi|269991469|emb|CAX37864.1| RNA polymerase II [Orthopsyche wardi]
gi|269991471|emb|CAX37865.1| RNA polymerase II [Orthopsyche wardi]
gi|269991473|emb|CAX37866.1| RNA polymerase II [Orthopsyche pakaha]
gi|269991475|emb|CAX37867.1| RNA polymerase II [Orthopsyche pakaha]
gi|269991477|emb|CAX37868.1| RNA polymerase II [Orthopsyche sematho]
gi|269991479|emb|CAX37869.1| RNA polymerase II [Orthopsyche ayapona]
gi|269991481|emb|CAX37870.1| RNA polymerase II [Orthopsyche rashala]
gi|269991485|emb|CAX37872.1| RNA polymerase II [Abacaria caledona]
gi|269991487|emb|CAX37873.1| RNA polymerase II [Caledopsyche cheesmanae]
gi|269991491|emb|CAX37875.1| RNA polymerase II [Caledopsyche cerberus]
gi|269991497|emb|CAX37878.1| RNA polymerase II [Caledopsyche phallaina]
gi|269991499|emb|CAX37879.1| RNA polymerase II [Caledopsyche phallaina]
gi|269991521|emb|CAX37881.1| RNA polymerase II [Caledopsyche leander]
gi|269991523|emb|CAX37882.1| RNA polymerase II [Caledopsyche leander]
gi|269991525|emb|CAX37883.1| RNA polymerase II [Caledopsyche noumea]
gi|269991529|emb|CAX37885.1| RNA polymerase II [Caledopsyche apide]
gi|269991533|emb|CAX37887.1| RNA polymerase II [Caledopsyche noumea]
gi|269991535|emb|CAX37888.1| RNA polymerase II [Stenopsychodes mjobergi]
gi|269991537|emb|CAX37889.1| RNA polymerase II [Hydropsyche sp. CW1]
gi|269991541|emb|CAX37891.1| RNA polymerase II [Cheumatopsyche alampeta]
gi|269991545|emb|CAX37893.1| RNA polymerase II [Caledopsyche atalanta]
gi|269991547|emb|CAX37894.1| RNA polymerase II [Caledopsyche atalanta]
gi|269991549|emb|CAX37895.1| RNA polymerase II [Caledopsyche atalanta]
gi|269991553|emb|CAX37897.1| RNA polymerase II [Orthopsyche piuna]
gi|269991555|emb|CAX37898.1| RNA polymerase II [Orthopsyche peta]
gi|269991559|emb|CAX37900.1| RNA polymerase II [Orthopsyche tneda]
gi|269991561|emb|CAX37901.1| RNA polymerase II [Orthopsyche mcfarlanei]
gi|269991563|emb|CAX37902.1| RNA polymerase II [Orthopsyche nadauna]
gi|269991565|emb|CAX37903.1| RNA polymerase II [Orthopsyche nadauna]
gi|269991567|emb|CAX37904.1| RNA polymerase II [Orthopsyche anulmika]
gi|269991569|emb|CAX37905.1| RNA polymerase II [Orthopsyche edhamasa]
gi|269991571|emb|CAX37906.1| RNA polymerase II [Orthopsyche touna]
gi|269991575|emb|CAX37908.1| RNA polymerase II [Orthopsyche pakaha]
gi|269991577|emb|CAX37909.1| RNA polymerase II [Orthopsyche schefterae]
gi|269991581|emb|CAX37911.1| RNA polymerase II [Orthopsyche imbah]
gi|269991583|emb|CAX37912.1| RNA polymerase II [Orthopsyche wardi]
gi|269991585|emb|CAX37913.1| RNA polymerase II [Orthopsyche tneda]
gi|269991587|emb|CAX37914.1| RNA polymerase II [Orthopsyche neboissi]
gi|269991589|emb|CAX37915.1| RNA polymerase II [Orthopsyche sematho]
gi|269991591|emb|CAX37916.1| RNA polymerase II [Caledopsyche cheesmanae]
gi|269991593|emb|CAX37917.1| RNA polymerase II [Abacaria sp. EV9]
gi|269991595|emb|CAX37918.1| RNA polymerase II [Abacaria sp. DJ6]
gi|269991597|emb|CAX37919.1| RNA polymerase II [Abacaria moselyi]
gi|269991603|emb|CAX37922.1| RNA polymerase II [Hydropsyche sp. EX5]
gi|269991609|emb|CAX37925.1| RNA polymerase II [Cheumatopsyche persica]
gi|269991621|emb|CAX37931.1| RNA polymerase II [Hydropsyche angustipennis]
gi|283476440|emb|CAY54374.1| RNA polymerase 2 [Daternomina sp. GM6]
gi|283476442|emb|CAY54375.1| RNA polymerase 2 [Daternomina sp. GM7]
gi|283836858|emb|CAX52778.1| RNA polymerase II large subunit [Polycentropus irroratus]
gi|283836860|emb|CAX52779.1| RNA polymerase II large subunit [Neureclipsis bimaculata]
gi|283836862|emb|CAX52780.1| RNA polymerase II large subunit [Polyplectropus sp. G8]
gi|283836864|emb|CAX52781.1| RNA polymerase II large subunit [Polyplectropus sp. I2]
gi|283836880|emb|CAX52883.1| RNA polymerase II large subunit [Tinodes sp. EW2]
gi|289779481|emb|CAX52782.1| RNA polymerase II large subunit [Aoteapsyche tepoka]
gi|289779483|emb|CAX52783.1| RNA polymerase II large subunit [Aoteapsyche colonica]
gi|289779499|emb|CAX52793.1| RNA polymerase II large subunit [Orthopsyche kina]
gi|289779501|emb|CAX52794.1| RNA polymerase II large subunit [Orthopsyche imbah]
gi|289779507|emb|CAX52797.1| RNA polymerase II large subunit [Orthopsyche vrupama]
gi|289779509|emb|CAX52798.1| RNA polymerase II large subunit [Orthopsyche nadauna]
gi|289779511|emb|CAX52799.1| RNA polymerase II large subunit [Orthopsyche wardi]
gi|289779513|emb|CAX52800.1| RNA polymerase II large subunit [Orthopsyche wardi]
gi|289779515|emb|CAX52801.1| RNA polymerase II large subunit [Orthopsyche pakaha]
gi|289779517|emb|CAX52802.1| RNA polymerase II large subunit [Orthopsyche sematho]
gi|289779519|emb|CAX52803.1| RNA polymerase II large subunit [Orthopsyche ayapona]
gi|289779521|emb|CAX52804.1| RNA polymerase II large subunit [Orthopsyche rashala]
gi|289779529|emb|CAX52808.1| RNA polymerase II large subunit [Caledopsyche phallaina]
gi|289779535|emb|CAX52812.1| RNA polymerase II large subunit [Caledopsyche apide]
gi|289779539|emb|CAX52814.1| RNA polymerase II large subunit [Caledopsyche noumea]
gi|289779541|emb|CAX52815.1| RNA polymerase II large subunit [Hydropsyche sp. CW1]
gi|289779549|emb|CAX52821.1| RNA polymerase II large subunit [Ecnomina sp. EH2]
gi|289779577|emb|CAX52836.1| RNA polymerase II large subunit [Daternomina sp. EK3]
gi|289779579|emb|CAX52837.1| RNA polymerase II large subunit [Daternomina sp. EK4]
gi|289779581|emb|CAX52838.1| RNA polymerase II large subunit [Daternomina sp. EK5]
gi|289779583|emb|CAX52839.1| RNA polymerase II large subunit [Daternomina sp. EK6]
gi|289779585|emb|CAX52840.1| RNA polymerase II large subunit [Daternomina sp. EK8]
gi|289779599|emb|CAX52847.1| RNA polymerase II large subunit [Ecnomina sp. EL6]
gi|289779601|emb|CAX52848.1| RNA polymerase II large subunit [Ecnomina sp. EL7]
gi|289779605|emb|CAX52850.1| RNA polymerase II large subunit [Austrotinodes sp. EL9]
gi|289779609|emb|CAX52852.1| RNA polymerase II large subunit [Austrotinodes sp. EM2]
gi|289779611|emb|CAX52853.1| RNA polymerase II large subunit [Austrotinodes recta]
gi|289779615|emb|CAX52855.1| RNA polymerase II large subunit [Ecnomina sp. EM7]
gi|289779617|emb|CAX52856.1| RNA polymerase II large subunit [Agmina parie]
gi|289779621|emb|CAX52859.1| RNA polymerase II large subunit [Agmina parie]
gi|289779623|emb|CAX52860.1| RNA polymerase II large subunit [Agmina mariae]
gi|289779625|emb|CAX52861.1| RNA polymerase II large subunit [Ecnomina sp. EO9]
gi|289779627|emb|CAX52862.1| RNA polymerase II large subunit [Ecnomina sp. EP1]
gi|289779631|emb|CAX52864.1| RNA polymerase II large subunit [Daternomina thinotes]
gi|289779633|emb|CAX52865.1| RNA polymerase II large subunit [Ecnomina sp. EP4]
gi|289779635|emb|CAX52866.1| RNA polymerase II large subunit [Ecnomina legula]
gi|289779637|emb|CAX52867.1| RNA polymerase II large subunit [Ecnomina sp. EP6]
gi|289779639|emb|CAX52868.1| RNA polymerase II large subunit [Ecnomina sp. EP7]
gi|289779641|emb|CAX52869.1| RNA polymerase II large subunit [Ecnomina sp. EP8]
gi|289779645|emb|CAX52871.1| RNA polymerase II large subunit [Caledopsyche atalanta]
gi|289779647|emb|CAX52872.1| RNA polymerase II large subunit [Caledopsyche atalanta]
gi|289779649|emb|CAX52873.1| RNA polymerase II large subunit [Caledopsyche atalanta]
gi|289779651|emb|CAX52874.1| RNA polymerase II large subunit [Orthopsyche piuna]
gi|289779653|emb|CAX52875.1| RNA polymerase II large subunit [Orthopsyche peta]
gi|289779655|emb|CAX52876.1| RNA polymerase II large subunit [Orthopsyche tneda]
gi|289779657|emb|CAX52877.1| RNA polymerase II large subunit [Orthopsyche anulmika]
gi|289779659|emb|CAX52878.1| RNA polymerase II large subunit [Orthopsyche touna]
gi|289779661|emb|CAX52879.1| RNA polymerase II large subunit [Abacaria sp. EV9]
gi|289779663|emb|CAX52880.1| RNA polymerase II large subunit [Abacaria sp. DJ6]
gi|289779665|emb|CAX52881.1| RNA polymerase II large subunit [Abacaria moselyi]
gi|289779667|emb|CAX52882.1| RNA polymerase II large subunit [Dipseudopsis sp. EW1]
gi|289779671|emb|CAX52886.1| RNA polymerase II large subunit [Hydropsyche sp. EX5]
gi|309755518|gb|ADO86593.1| RNA polymerase II [Agmina sp. 11 ME-2010]
gi|309755530|gb|ADO86599.1| RNA polymerase II [Agmina sp. 33 ME-2010]
gi|309755532|gb|ADO86600.1| RNA polymerase II [Agmina sp. 49 ME-2010]
gi|309755534|gb|ADO86601.1| RNA polymerase II [Agmina sp. 31 ME-2010]
gi|309755538|gb|ADO86603.1| RNA polymerase II [Agmina sp. 11 ME-2010]
gi|309755540|gb|ADO86604.1| RNA polymerase II [Agmina sp. 24 ME-2010]
gi|309755542|gb|ADO86605.1| RNA polymerase II [Agmina sp. 12 ME-2010]
gi|309755544|gb|ADO86606.1| RNA polymerase II [Agmina sp. 33 ME-2010]
gi|309755548|gb|ADO86608.1| RNA polymerase II [Agmina sp. 45 ME-2010]
gi|309755550|gb|ADO86609.1| RNA polymerase II [Agmina sp. 12 ME-2010]
gi|309755552|gb|ADO86610.1| RNA polymerase II [Agmina sp. 40 ME-2010]
gi|309755554|gb|ADO86611.1| RNA polymerase II [Agmina panda]
gi|309755556|gb|ADO86612.1| RNA polymerase II [Agmina diriwi]
gi|309755560|gb|ADO86614.1| RNA polymerase II [Agmina mariae]
gi|309755562|gb|ADO86615.1| RNA polymerase II [Agmina diriwi]
gi|309755564|gb|ADO86616.1| RNA polymerase II [Agmina sp. 21 ME-2010]
gi|309755566|gb|ADO86617.1| RNA polymerase II [Agmina hamata]
gi|309755568|gb|ADO86618.1| RNA polymerase II [Agmina mariae]
gi|309755570|gb|ADO86619.1| RNA polymerase II [Agmina sp. 12 ME-2010]
gi|309755572|gb|ADO86620.1| RNA polymerase II [Agmina nodosa]
gi|309755574|gb|ADO86621.1| RNA polymerase II [Agmina sp. 31 ME-2010]
gi|309755578|gb|ADO86623.1| RNA polymerase II [Agmina sp. 18 ME-2010]
gi|309755584|gb|ADO86626.1| RNA polymerase II [Agmina hirta]
gi|309755586|gb|ADO86627.1| RNA polymerase II [Agmina sp. 45 ME-2010]
gi|309755588|gb|ADO86628.1| RNA polymerase II [Agmina rhara]
gi|309755590|gb|ADO86629.1| RNA polymerase II [Agmina sp. 23 ME-2010]
gi|309755594|gb|ADO86631.1| RNA polymerase II [Agmina sp. 4 ME-2010]
gi|309755596|gb|ADO86632.1| RNA polymerase II [Agmina joycei]
gi|309755600|gb|ADO86634.1| RNA polymerase II [Agmina sp. 22 ME-2010]
gi|309755602|gb|ADO86635.1| RNA polymerase II [Agmina sp. 8 ME-2010]
gi|309755604|gb|ADO86636.1| RNA polymerase II [Agmina padi]
gi|309755606|gb|ADO86637.1| RNA polymerase II [Agmina sp. 49 ME-2010]
gi|309755608|gb|ADO86638.1| RNA polymerase II [Agmina mariae]
gi|309755610|gb|ADO86639.1| RNA polymerase II [Ecnomidae gen. sp. 3 ME-2010]
gi|309755612|gb|ADO86640.1| RNA polymerase II [Agmina acula]
gi|309755614|gb|ADO86641.1| RNA polymerase II [Agmina sp. 18 ME-2010]
gi|309755618|gb|ADO86643.1| RNA polymerase II [Agmina sp. 43 ME-2010]
gi|309755620|gb|ADO86644.1| RNA polymerase II [Agmina sp. 24 ME-2010]
gi|309755622|gb|ADO86645.1| RNA polymerase II [Agmina sp. 24 ME-2010]
gi|309755624|gb|ADO86646.1| RNA polymerase II [Agmina padi]
gi|309755628|gb|ADO86648.1| RNA polymerase II [Agmina sp. 5 ME-2010]
gi|309755630|gb|ADO86649.1| RNA polymerase II [Agmina sp. 53 ME-2010]
gi|309755632|gb|ADO86650.1| RNA polymerase II [Agmina diriwi]
gi|309755634|gb|ADO86651.1| RNA polymerase II [Agmina sp. 3 ME-2010]
gi|309755636|gb|ADO86652.1| RNA polymerase II [Agmina bimaculata]
gi|309755640|gb|ADO86654.1| RNA polymerase II [Agmina artarima]
gi|309755648|gb|ADO86658.1| RNA polymerase II [Agmina berada]
gi|309755650|gb|ADO86659.1| RNA polymerase II [Agmina sp. 57 ME-2010]
gi|309755652|gb|ADO86660.1| RNA polymerase II [Agmina cheirella]
gi|309755658|gb|ADO86663.1| RNA polymerase II [Ecnomidae gen. sp. 3 ME-2010]
gi|309755662|gb|ADO86665.1| RNA polymerase II [Agmina sp. 49 ME-2010]
gi|309755668|gb|ADO86668.1| RNA polymerase II [Agmina sp. 50 ME-2010]
gi|309755670|gb|ADO86669.1| RNA polymerase II [Agmina sp. 32 ME-2010]
gi|309755672|gb|ADO86670.1| RNA polymerase II [Agmina sp. 10 ME-2010]
gi|309755676|gb|ADO86672.1| RNA polymerase II [Agmina sp. 10 ME-2010]
gi|309755678|gb|ADO86673.1| RNA polymerase II [Agmina sp. 29 ME-2010]
gi|309755680|gb|ADO86674.1| RNA polymerase II [Agmina sp. 24 ME-2010]
gi|309755682|gb|ADO86675.1| RNA polymerase II [Agmina sp. 3 ME-2010]
gi|309755684|gb|ADO86676.1| RNA polymerase II [Agmina sp. 15 ME-2010]
gi|309755686|gb|ADO86677.1| RNA polymerase II [Agmina sp. 31 ME-2010]
gi|309755692|gb|ADO86680.1| RNA polymerase II [Agmina bimaculata]
gi|309755696|gb|ADO86682.1| RNA polymerase II [Agmina nodosa]
gi|309755698|gb|ADO86683.1| RNA polymerase II [Agmina sp. 39 ME-2010]
gi|309755700|gb|ADO86684.1| RNA polymerase II [Agmina artarima]
gi|309755702|gb|ADO86685.1| RNA polymerase II [Agmina sp. 34 ME-2010]
gi|309755704|gb|ADO86686.1| RNA polymerase II [Agmina sp. 39 ME-2010]
gi|309755708|gb|ADO86688.1| RNA polymerase II [Agmina sp. 25 ME-2010]
gi|309755710|gb|ADO86689.1| RNA polymerase II [Agmina hastata]
gi|309755712|gb|ADO86690.1| RNA polymerase II [Agmina sp. 55 ME-2010]
gi|309755714|gb|ADO86691.1| RNA polymerase II [Agmina sp. 6 ME-2010]
gi|309755718|gb|ADO86693.1| RNA polymerase II [Agmina sp. 21 ME-2010]
gi|309755720|gb|ADO86694.1| RNA polymerase II [Agmina sp. 24 ME-2010]
gi|309755724|gb|ADO86696.1| RNA polymerase II [Agmina sp. 19 ME-2010]
gi|309755726|gb|ADO86697.1| RNA polymerase II [Agmina cf. padi ME-2010]
gi|309755728|gb|ADO86698.1| RNA polymerase II [Agmina sp. 53 ME-2010]
gi|309755730|gb|ADO86699.1| RNA polymerase II [Agmina sp. 18 ME-2010]
gi|309755732|gb|ADO86700.1| RNA polymerase II [Agmina sp. 55 ME-2010]
gi|309755734|gb|ADO86701.1| RNA polymerase II [Agmina sp. 49 ME-2010]
gi|309755736|gb|ADO86702.1| RNA polymerase II [Agmina sp. 18 ME-2010]
gi|309755738|gb|ADO86703.1| RNA polymerase II [Agmina sp. 48 ME-2010]
gi|309755742|gb|ADO86705.1| RNA polymerase II [Agmina sp. 49 ME-2010]
gi|309755744|gb|ADO86706.1| RNA polymerase II [Agmina sp. 25 ME-2010]
gi|309755748|gb|ADO86708.1| RNA polymerase II [Agmina sp. 18 ME-2010]
gi|309755750|gb|ADO86709.1| RNA polymerase II [Agmina sp. 1 ME-2010]
gi|309755752|gb|ADO86710.1| RNA polymerase II [Ecnomidae gen. sp. 1 ME-2010]
gi|309755754|gb|ADO86711.1| RNA polymerase II [Agmina sp. 31 ME-2010]
gi|309755758|gb|ADO86713.1| RNA polymerase II [Agmina sp. 31 ME-2010]
gi|309755760|gb|ADO86714.1| RNA polymerase II [Agmina sp. 31 ME-2010]
gi|309755762|gb|ADO86715.1| RNA polymerase II [Agmina sp. 31 ME-2010]
gi|309755764|gb|ADO86716.1| RNA polymerase II [Agmina kara]
gi|309755766|gb|ADO86717.1| RNA polymerase II [Agmina bimaculata]
gi|309755768|gb|ADO86718.1| RNA polymerase II [Agmina padi]
gi|309755770|gb|ADO86719.1| RNA polymerase II [Agmina sp. 2 ME-2010]
gi|309755772|gb|ADO86720.1| RNA polymerase II [Agmina sp. 2 ME-2010]
gi|309755774|gb|ADO86721.1| RNA polymerase II [Agmina sp. 31 ME-2010]
gi|309755776|gb|ADO86722.1| RNA polymerase II [Agmina sp. 46 ME-2010]
gi|309755778|gb|ADO86723.1| RNA polymerase II [Agmina sp. 42 ME-2010]
gi|309755784|gb|ADO86726.1| RNA polymerase II [Agmina sp. 1 ME-2010]
gi|309755786|gb|ADO86727.1| RNA polymerase II [Agmina sp. 26 ME-2010]
gi|309755790|gb|ADO86729.1| RNA polymerase II [Agmina panda]
gi|309755796|gb|ADO86732.1| RNA polymerase II [Agmina nodosa]
gi|309755798|gb|ADO86733.1| RNA polymerase II [Agmina sp. 21 ME-2010]
gi|309755800|gb|ADO86734.1| RNA polymerase II [Agmina sp. 55 ME-2010]
gi|309755802|gb|ADO86735.1| RNA polymerase II [Agmina sp. 30 ME-2010]
gi|309755804|gb|ADO86736.1| RNA polymerase II [Agmina kara]
gi|309755806|gb|ADO86737.1| RNA polymerase II [Agmina sp. 13 ME-2010]
gi|309755808|gb|ADO86738.1| RNA polymerase II [Agmina sp. 54 ME-2010]
gi|309755810|gb|ADO86739.1| RNA polymerase II [Agmina sp. 25 ME-2010]
gi|309755812|gb|ADO86740.1| RNA polymerase II [Agmina sp. 39 ME-2010]
gi|309755814|gb|ADO86741.1| RNA polymerase II [Agmina sp. 17 ME-2010]
gi|309755818|gb|ADO86743.1| RNA polymerase II [Agmina sp. 28 ME-2010]
gi|309755820|gb|ADO86744.1| RNA polymerase II [Agmina sp. 44 ME-2010]
gi|309755824|gb|ADO86746.1| RNA polymerase II [Agmina padi]
gi|309755828|gb|ADO86748.1| RNA polymerase II [Agmina joycei]
gi|309755830|gb|ADO86749.1| RNA polymerase II [Agmina diriwi]
gi|309755834|gb|ADO86751.1| RNA polymerase II [Agmina joycei]
gi|309755838|gb|ADO86753.1| RNA polymerase II [Agmina sp. 10 ME-2010]
gi|309755842|gb|ADO86755.1| RNA polymerase II [Agmina sp. 8 ME-2010]
gi|309755846|gb|ADO86757.1| RNA polymerase II [Agmina diriwi]
gi|309755852|gb|ADO86760.1| RNA polymerase II [Agmina sp. 22 ME-2010]
gi|309755854|gb|ADO86761.1| RNA polymerase II [Agmina nodosa]
gi|309755856|gb|ADO86762.1| RNA polymerase II [Agmina hastata]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417154|emb|CBI70607.1| RNA polymerase II [Aphilorheithrus decoratus]
Length = 267
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|283476434|emb|CAY54371.1| RNA polymerase 2 [Ecnomus sp. GM3]
gi|289779547|emb|CAX52820.1| RNA polymerase II large subunit [Ecnomus continentalis]
gi|289779553|emb|CAX52823.1| RNA polymerase II large subunit [Ecnomus cygnitus]
gi|289779565|emb|CAX52830.1| RNA polymerase II large subunit [Psychomyiellodes sp. EJ2]
gi|289779569|emb|CAX52832.1| RNA polymerase II large subunit [Ecnomus sp. EJ4]
gi|289779571|emb|CAX52833.1| RNA polymerase II large subunit [Ecnomus similis]
gi|289779575|emb|CAX52835.1| RNA polymerase II large subunit [Ecnomus sp. EK2]
gi|289779589|emb|CAX52842.1| RNA polymerase II large subunit [Ecnomus sp. EL1]
gi|289779591|emb|CAX52843.1| RNA polymerase II large subunit [Ecnomus sp. EL2]
gi|289779593|emb|CAX52844.1| RNA polymerase II large subunit [Ecnomus sp. EL3]
gi|289779595|emb|CAX52845.1| RNA polymerase II large subunit [Ecnomus sp. EL4]
gi|289779597|emb|CAX52846.1| RNA polymerase II large subunit [Ecnomus sp. EL5]
gi|289779603|emb|CAX52849.1| RNA polymerase II large subunit [Ecnomus atratus]
gi|289779673|emb|CAX52887.1| RNA polymerase II large subunit [Ecnomus tenellus]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991605|emb|CAX37923.1| RNA polymerase II [Hydropsyche valkanovi]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755722|gb|ADO86695.1| RNA polymerase II [Agmina sp. 10 ME-2010]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|283549559|emb|CAX62859.1| RNA polymerase 2 [Zelolessica cheira]
gi|283549563|emb|CAX62861.1| RNA polymerase 2 [Beraeoptera roria]
gi|283549581|emb|CAX62870.1| RNA polymerase 2 [Pliocaloca sp. CQ3]
gi|283549585|emb|CAX62872.1| RNA polymerase 2 [Calocoides aquilonia]
gi|283549593|emb|CAX62876.1| RNA polymerase 2 [Conoesucus cf. norelus KAJ-2009]
gi|317417330|emb|CBI70695.1| RNA polymerase II [Molannodes tinctus]
gi|317417334|emb|CBI70697.1| RNA polymerase II [Atriplectides dubius]
gi|317417344|emb|CBI70702.1| RNA polymerase II [Atriplectides dubius]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|283549555|emb|CAX62857.1| RNA polymerase 2 [Rakiura vernale]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755816|gb|ADO86742.1| RNA polymerase II [Agmina sp. 31 ME-2010]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755688|gb|ADO86678.1| RNA polymerase II [Agmina sp. 18 ME-2010]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755558|gb|ADO86613.1| RNA polymerase II [Agmina sp. 12 ME-2010]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755526|gb|ADO86597.1| RNA polymerase II [Agmina sp. 21 ME-2010]
gi|309755644|gb|ADO86656.1| RNA polymerase II [Agmina jepiva]
gi|309755716|gb|ADO86692.1| RNA polymerase II [Agmina sp. 53 ME-2010]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991615|emb|CAX37928.1| RNA polymerase II [Hydromanicus sp. EY8]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991557|emb|CAX37899.1| RNA polymerase II [Orthopsyche vrupama]
gi|269991573|emb|CAX37907.1| RNA polymerase II [Orthopsyche pakaha]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991551|emb|CAX37896.1| RNA polymerase II [Caledopsyche erotos]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991489|emb|CAX37874.1| RNA polymerase II [Caledopsyche cheesmanae]
gi|289779525|emb|CAX52806.1| RNA polymerase II large subunit [Caledopsyche cheesmanae]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|289779675|emb|CAX52888.1| RNA polymerase II large subunit [Pseudoneureclipsis sp. FR5]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|289779545|emb|CAX52818.1| RNA polymerase II large subunit [Lype phaeopa]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755592|gb|ADO86630.1| RNA polymerase II [Agmina mariae]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417328|emb|CBI70694.1| RNA polymerase II [Blyzophilus dorsohamatus]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|289779573|emb|CAX52834.1| RNA polymerase II large subunit [Ecnomus sp. EJ9]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|289779555|emb|CAX52824.1| RNA polymerase II large subunit [Ecnomus tillyardi]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417324|emb|CBI70692.1| RNA polymerase II [Oecetis minasata]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417196|emb|CBI70628.1| RNA polymerase II [Setodes incertus]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991519|emb|CAX37880.1| RNA polymerase II [Caledopsyche leander]
gi|289779531|emb|CAX52810.1| RNA polymerase II large subunit [Caledopsyche leander]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417320|emb|CBI70690.1| RNA polymerase II [Grumichella flaveola]
gi|317417340|emb|CBI70700.1| RNA polymerase II [Grumichella flaveola]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417314|emb|CBI70687.1| RNA polymerase II [Anisocentropus sp. TM-2009]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|289779567|emb|CAX52831.1| RNA polymerase II large subunit [Psychomyiellodes excavatus]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|283549567|emb|CAX62863.1| RNA polymerase 2 [Helicopsyche albescens]
Length = 257
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755780|gb|ADO86724.1| RNA polymerase II [Agmina sp. 28 ME-2010]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755642|gb|ADO86655.1| RNA polymerase II [Agmina urugi]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755616|gb|ADO86642.1| RNA polymerase II [Agmina sp. 38 ME-2010]
gi|309755626|gb|ADO86647.1| RNA polymerase II [Agmina sp. 31 ME-2010]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755520|gb|ADO86594.1| RNA polymerase II [Agmina sp. 53 ME-2010]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|289779557|emb|CAX52825.1| RNA polymerase II large subunit [Ecnomina sp. EH8]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|283836868|emb|CAX52788.1| RNA polymerase II large subunit [Hydrobiosella uncinata]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991623|emb|CAX37932.1| RNA polymerase II [Diplectrona sp. FV8]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417316|emb|CBI70688.1| RNA polymerase II [Limnephilus centralis]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417312|emb|CBI70686.1| RNA polymerase II [Marilia sp. TM-2009]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417186|emb|CBI70623.1| RNA polymerase II [Hudsonema alienum]
Length = 267
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|309755646|gb|ADO86657.1| RNA polymerase II [Agmina kapiwa]
gi|309755706|gb|ADO86687.1| RNA polymerase II [Agmina cf. kapiwa ME-2010]
gi|309755836|gb|ADO86752.1| RNA polymerase II [Agmina sp. 56 ME-2010]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991543|emb|CAX37892.1| RNA polymerase II [Abacaria ruficeps]
gi|289779643|emb|CAX52870.1| RNA polymerase II large subunit [Abacaria ruficeps]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417326|emb|CBI70693.1| RNA polymerase II [Oecetis australis]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417322|emb|CBI70691.1| RNA polymerase II [Symphitoneuria sabaensis]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|289779619|emb|CAX52857.1| RNA polymerase II large subunit [Agmina sp. EM9]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991461|emb|CAX37860.1| RNA polymerase II [Orthopsyche mcfarlanei]
gi|289779505|emb|CAX52796.1| RNA polymerase II large subunit [Orthopsyche mcfarlanei]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417336|emb|CBI70698.1| RNA polymerase II [Phylloicus lituratus]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417228|emb|CBI70644.1| RNA polymerase II [Lectrides varians]
gi|317417230|emb|CBI70645.1| RNA polymerase II [Lectrides varians]
gi|317417240|emb|CBI70650.1| RNA polymerase II [Triplectides volda]
gi|317417304|emb|CBI70682.1| RNA polymerase II [Leptocerus stephanei]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|283476436|emb|CAY54372.1| RNA polymerase 2 [Ecnomus sp. GM4]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755524|gb|ADO86596.1| RNA polymerase II [Agmina sp. 21 ME-2010]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|283549557|emb|CAX62858.1| RNA polymerase 2 [Olinga feredayi]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991539|emb|CAX37890.1| RNA polymerase II [Hydropsyche alluaudina]
gi|289779543|emb|CAX52816.1| RNA polymerase II large subunit [Hydropsyche alluaudina]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755844|gb|ADO86756.1| RNA polymerase II [Agmina sp. 21 ME-2010]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417318|emb|CBI70689.1| RNA polymerase II [Achoropsyche duodecimpunctata]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417286|emb|CBI70673.1| RNA polymerase II [Leptocerina ramosa]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|289779497|emb|CAX52792.1| RNA polymerase II large subunit [Orthopsyche schefterae]
gi|289779551|emb|CAX52822.1| RNA polymerase II large subunit [Ecnomina krokale]
Length = 267
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|309755694|gb|ADO86681.1| RNA polymerase II [Agmina sp. 21 ME-2010]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417342|emb|CBI70701.1| RNA polymerase II [Atanatolica penai]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991449|emb|CAX37854.1| RNA polymerase II [Hydroptila simulans]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417332|emb|CBI70696.1| RNA polymerase II [Limnocentropus himalayanus]
Length = 257
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417146|emb|CBI70603.1| RNA polymerase II [Trichovespula macrocera]
Length = 267
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|283549589|emb|CAX62874.1| RNA polymerase 2 [Taskiropsyche lacustris]
Length = 267
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417148|emb|CBI70604.1| RNA polymerase II [Barynema sp. NHRS CQ7]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417310|emb|CBI70685.1| RNA polymerase II [Ganonema ochraceellum]
Length = 254
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 142 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 201
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 202 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 254
>gi|283549553|emb|CAX62856.1| RNA polymerase 2 [Helicopha pouebo]
Length = 257
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417270|emb|CBI70665.1| RNA polymerase II [Leptorussa darlingtoni]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|283549603|emb|CAX62881.1| RNA polymerase 2 [Tamasia variegata]
Length = 253
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 141 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 200
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 201 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 253
>gi|317417182|emb|CBI70621.1| RNA polymerase II [Notalina bifaria]
gi|317417198|emb|CBI70629.1| RNA polymerase II [Nectopsyche punctata]
gi|317417246|emb|CBI70653.1| RNA polymerase II [Notalina fulva]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417142|emb|CBI70601.1| RNA polymerase II [Philorheithrus agilis]
gi|317417156|emb|CBI70608.1| RNA polymerase II [Austrheithrus glymma]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417302|emb|CBI70681.1| RNA polymerase II [Oecetis royi group sp. NHRS EG5]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417152|emb|CBI70606.1| RNA polymerase II [Tasmanthrus angustipennis]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417218|emb|CBI70639.1| RNA polymerase II [Leptorussa darlingtoni]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417216|emb|CBI70638.1| RNA polymerase II [Brachysetodes bifurcatus]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|283549597|emb|CAX62878.1| RNA polymerase 2 [Gracilipsodes psocopterus]
gi|317417162|emb|CBI70611.1| RNA polymerase II [Gracilipsodes aureus]
gi|317417166|emb|CBI70613.1| RNA polymerase II [Gracilipsodes grandis]
gi|317417192|emb|CBI70626.1| RNA polymerase II [Grumichella flaveola]
gi|317417200|emb|CBI70630.1| RNA polymerase II [Triplexa villa]
gi|317417202|emb|CBI70631.1| RNA polymerase II [Triplexa villa]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417296|emb|CBI70678.1| RNA polymerase II [Ptochoecetis africana]
gi|317417298|emb|CBI70679.1| RNA polymerase II [Ptochoecetis africana]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417222|emb|CBI70641.1| RNA polymerase II [Setodes bracteatus]
Length = 257
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417194|emb|CBI70627.1| RNA polymerase II [Hudsonema amabile]
gi|317417276|emb|CBI70668.1| RNA polymerase II [Achoropsyche duodecimpunctata]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417294|emb|CBI70677.1| RNA polymerase II [Leptocerina spinigera]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417260|emb|CBI70660.1| RNA polymerase II [Adicella reducta]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417220|emb|CBI70640.1| RNA polymerase II [Leptocerus ousta]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417282|emb|CBI70671.1| RNA polymerase II [Oecetis akimi]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|283549587|emb|CAX62873.1| RNA polymerase 2 [Caenota plicata]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|283549583|emb|CAX62871.1| RNA polymerase 2 [Coenoria boera]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|283549549|emb|CAX62854.1| RNA polymerase 2 [Molanna angustata]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417290|emb|CBI70675.1| RNA polymerase II [Homilia lardeuxi]
gi|317417292|emb|CBI70676.1| RNA polymerase II [Homilia lardeuxi]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417258|emb|CBI70659.1| RNA polymerase II [Oecetis (Pseudosetodes) sp. NHRS DN4]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417190|emb|CBI70625.1| RNA polymerase II [Atanatolica botosaneanui]
gi|317417214|emb|CBI70637.1| RNA polymerase II [Brachysetodes tripartitus]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417158|emb|CBI70609.1| RNA polymerase II [Triplectides aequalichelatus]
gi|317417164|emb|CBI70612.1| RNA polymerase II [Symphitoneuria triangulata]
gi|317417168|emb|CBI70614.1| RNA polymerase II [Symphitoneuria clara]
gi|317417234|emb|CBI70647.1| RNA polymerase II [Symphitoneuria opposita]
gi|317417244|emb|CBI70652.1| RNA polymerase II [Triplectides gonetalus]
gi|317417306|emb|CBI70683.1| RNA polymerase II [Tagalopsyche jolandae]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|283549575|emb|CAX62867.1| RNA polymerase 2 [Sericostoma clypeatum]
Length = 267
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417274|emb|CBI70667.1| RNA polymerase II [Erotesis baltica]
Length = 267
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417206|emb|CBI70633.1| RNA polymerase II [Nectopsyche argentata]
Length = 267
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417176|emb|CBI70618.1| RNA polymerase II [Oecetis lacustris]
Length = 267
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|283549599|emb|CAX62879.1| RNA polymerase 2 [Condocerus paludosus]
gi|317417160|emb|CBI70610.1| RNA polymerase II [Triplectides tigrinus]
gi|317417170|emb|CBI70615.1| RNA polymerase II [Triaenodes bicolor]
gi|317417204|emb|CBI70632.1| RNA polymerase II [Parasetodes respersellus]
gi|317417238|emb|CBI70649.1| RNA polymerase II [Condocerus paludosus]
gi|317417248|emb|CBI70654.1| RNA polymerase II [Setodes bispinus]
gi|317417278|emb|CBI70669.1| RNA polymerase II [Sericodes sp. NHRS EE9]
gi|317417280|emb|CBI70670.1| RNA polymerase II [Sericodes sp. NHRS EF1]
Length = 267
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|283549579|emb|CAX62869.1| RNA polymerase 2 [Notidobiella chacayana]
gi|317417178|emb|CBI70619.1| RNA polymerase II [Triaenodes detruncatus]
gi|317417184|emb|CBI70622.1| RNA polymerase II [Triplectidina moselyi]
gi|317417236|emb|CBI70648.1| RNA polymerase II [Notalina moselyi]
gi|317417242|emb|CBI70651.1| RNA polymerase II [Triplectides australis]
gi|317417252|emb|CBI70656.1| RNA polymerase II [Triplectides magnus]
gi|317417262|emb|CBI70661.1| RNA polymerase II [Mystacides niger]
gi|317417264|emb|CBI70662.1| RNA polymerase II [Athripsodes cinereus]
gi|317417266|emb|CBI70663.1| RNA polymerase II [Athripsodes aterrimus]
gi|317417272|emb|CBI70666.1| RNA polymerase II [Notoperata maculata]
gi|317417308|emb|CBI70684.1| RNA polymerase II [Tagalopsyche jolandae]
Length = 267
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417172|emb|CBI70616.1| RNA polymerase II [Oecetis ochracea]
Length = 267
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|194460494|gb|ACF71921.1| RNA polymerase II [Euglossa retroviridis]
Length = 270
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 158 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 217
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 218 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 270
>gi|194460307|gb|ACF71828.1| RNA polymerase II [Eufriesea lucida]
Length = 274
Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 162 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 221
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 222 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 274
>gi|31127008|gb|AAK11873.2| RNA polymerase II largest subunit [Bothropolys multidentatus]
Length = 624
Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 110/127 (86%), Positives = 118/127 (92%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG SA+KSL+E+NN K+MVV+G+KG INISQVI VGQQ
Sbjct: 371 TLRQTFENQVNRILNDARDKTGSSAEKSLSEFNNFKSMVVSGAKGXXINISQVIXXVGQQ 430
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF KRTLPHFIK+DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 431 NVEGKRIPFGFCKRTLPHFIKNDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 490
Query: 123 VKTAETA 129
VKTAET
Sbjct: 491 VKTAETG 497
>gi|309755782|gb|ADO86725.1| RNA polymerase II [Agmina sp. 1 ME-2010]
Length = 257
Score = 233 bits (593), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755598|gb|ADO86633.1| RNA polymerase II [Agmina sp. 14 ME-2010]
Length = 148
Score = 232 bits (592), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 109/112 (97%), Positives = 111/112 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 37 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 96
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF FHAMGGR
Sbjct: 97 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFXFHAMGGR 148
>gi|194460452|gb|ACF71900.1| RNA polymerase II [Eufriesea corusca]
Length = 270
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 158 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 217
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NV+GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 218 NVQGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 270
>gi|449687727|ref|XP_002164354.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
1, partial [Hydra magnipapillata]
Length = 1595
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 107/126 (84%), Positives = 119/126 (94%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+L+QTFEN+VNRILN+ RDKTG SA+KSL+ +N+ K+MVVAGSKGSNINISQ+IA VGQQ
Sbjct: 287 SLRQTFENKVNRILNECRDKTGASAQKSLSVFNSFKSMVVAGSKGSNINISQIIAVVGQQ 346
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFR RTLPHF KDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 347 NVEGKRIPFGFRHRTLPHFNKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTA 406
Query: 123 VKTAET 128
VKT+ET
Sbjct: 407 VKTSET 412
Score = 169 bits (429), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 81/91 (89%), Positives = 86/91 (94%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SKKPK PS
Sbjct: 634 AQAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPS 693
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFL GQAARDAE AK+VLCRLEHTTLRKV
Sbjct: 694 LTVFLLGQAARDAEHAKDVLCRLEHTTLRKV 724
>gi|283836882|emb|CAX52884.1| RNA polymerase II large subunit [Tinodes sp. EW3]
Length = 257
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNL AMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLXAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|194460363|gb|ACF71856.1| RNA polymerase II [Euglossa sapphirina]
Length = 270
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/114 (95%), Positives = 112/114 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 156 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 215
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 116
NVEGKRIPFGFRK TLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGRE
Sbjct: 216 NVEGKRIPFGFRKITLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGRE 269
>gi|309755674|gb|ADO86671.1| RNA polymerase II [Agmina sp. 45 ME-2010]
Length = 257
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFI DDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIXDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755848|gb|ADO86758.1| RNA polymerase II [Agmina rhara]
Length = 257
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFI DDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIXDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755576|gb|ADO86622.1| RNA polymerase II [Agmina sp. 31 ME-2010]
Length = 257
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRXRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991611|emb|CAX37926.1| RNA polymerase II [Potamyia elektra]
Length = 257
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNL AMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLXAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|289779533|emb|CAX52811.1| RNA polymerase II large subunit [Caledopsyche kimminsi]
Length = 257
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/112 (96%), Positives = 111/112 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 114
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGG
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGG 256
>gi|269991527|emb|CAX37884.1| RNA polymerase II [Caledopsyche kimminsi]
Length = 256
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/112 (96%), Positives = 111/112 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 114
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGG
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGG 256
>gi|309755822|gb|ADO86745.1| RNA polymerase II [Agmina sp. 7 ME-2010]
gi|309755832|gb|ADO86750.1| RNA polymerase II [Agmina artarima]
Length = 257
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKS TEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSXTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755850|gb|ADO86759.1| RNA polymerase II [Agmina kara]
Length = 257
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNR LNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRXLNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269992197|emb|CAX51720.1| RNA polymerase II [Caledopsyche phallaina]
gi|283836870|emb|CAX52809.1| RNA polymerase II large subunit [Caledopsyche phallaina]
Length = 257
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKR PFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRXPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417140|emb|CBI70600.1| RNA polymerase II [Kokiria miharo]
Length = 256
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/112 (96%), Positives = 111/112 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 114
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGG
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGG 256
>gi|283476438|emb|CAY54373.1| RNA polymerase 2 [Ecnomus sp. GM5]
Length = 257
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSN NISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNXNISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417300|emb|CBI70680.1| RNA polymerase II [Setodes flagellatus]
Length = 257
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQV ACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVXACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755638|gb|ADO86653.1| RNA polymerase II [Agmina vuegi]
Length = 257
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NV GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVXGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991447|emb|CAX37853.1| RNA polymerase II [Orthopsyche thomasi]
gi|289779493|emb|CAX52790.1| RNA polymerase II large subunit [Orthopsyche thomasi]
Length = 257
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRIL DARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILXDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755740|gb|ADO86704.1| RNA polymerase II [Agmina sp. 9 ME-2010]
Length = 257
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGF KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFXKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755656|gb|ADO86662.1| RNA polymerase II [Agmina comata]
Length = 257
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV NSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVXNSYLAGLTPSEFYFHAMGGR 257
>gi|289779487|emb|CAX52786.1| RNA polymerase II large subunit [Zelandoptila moselyi]
Length = 257
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNI ISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNIXISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991531|emb|CAX37886.1| RNA polymerase II [Caledopsyche kimminsi]
gi|289779537|emb|CAX52813.1| RNA polymerase II large subunit [Caledopsyche kimminsi]
Length = 257
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYN LKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNXLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755788|gb|ADO86728.1| RNA polymerase II [Agmina sp. 21 ME-2010]
Length = 257
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRIL DARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILXDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417174|emb|CBI70617.1| RNA polymerase II [Mystacides longicornis]
Length = 267
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTF NQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFXNQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417212|emb|CBI70636.1| RNA polymerase II [Triplectides jaffueli]
Length = 267
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGS INISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSXINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|309755664|gb|ADO86666.1| RNA polymerase II [Agmina sp. 48 ME-2010]
Length = 257
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGS INISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSXINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417284|emb|CBI70672.1| RNA polymerase II [Triaenodes kwabena]
Length = 267
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINIS VIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISXVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|269991601|emb|CAX37921.1| RNA polymerase II [Hydropsyche sp. EX4]
Length = 257
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QT ENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTXENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417210|emb|CBI70635.1| RNA polymerase II [Triplectides nigripennis]
Length = 267
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQX 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|309755666|gb|ADO86667.1| RNA polymerase II [Agmina sp. 19 ME-2010]
Length = 257
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE +FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEXYFHAMGGR 257
>gi|269991613|emb|CAX37927.1| RNA polymerase II [Potamyia flavata]
Length = 257
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIP GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPXGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991579|emb|CAX37910.1| RNA polymerase II [Orthopsyche schefterae]
Length = 257
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRG VENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGXVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755826|gb|ADO86747.1| RNA polymerase II [Agmina hastata]
Length = 257
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRG VENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGXVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755654|gb|ADO86661.1| RNA polymerase II [Agmina acula]
Length = 257
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGG AKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGFAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|269991493|emb|CAX37876.1| RNA polymerase II [Caledopsyche erotos]
gi|269991495|emb|CAX37877.1| RNA polymerase II [Caledopsyche erotos]
gi|289779527|emb|CAX52807.1| RNA polymerase II large subunit [Caledopsyche erotos]
Length = 257
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILN ARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNXARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755746|gb|ADO86707.1| RNA polymerase II [Agmina sp. 29 ME-2010]
gi|309755756|gb|ADO86712.1| RNA polymerase II [Agmina sp. 29 ME-2010]
Length = 257
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILN ARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNXARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|309755522|gb|ADO86595.1| RNA polymerase II [Agmina sp. 36 ME-2010]
Length = 257
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYG ESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGQESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417288|emb|CBI70674.1| RNA polymerase II [Parasetodes sudanensis]
Length = 267
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDD GPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDXGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|289779559|emb|CAX52826.1| RNA polymerase II large subunit [Ecnomus sp. EI2]
Length = 257
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS LAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSXLAGLTPSEFYFHAMGGR 257
>gi|269991459|emb|CAX37859.1| RNA polymerase II [Orthopsyche tneda]
gi|289779503|emb|CAX52795.1| RNA polymerase II large subunit [Orthopsyche tneda]
Length = 257
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS LAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSXLAGLTPSEFYFHAMGGR 257
>gi|194460430|gb|ACF71889.1| RNA polymerase II [Eufriesea chalybaea]
Length = 278
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 108/116 (93%), Positives = 112/116 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGL 118
NVEGKRIPFGFRKRTLPHFI +DYGPESRGFV NSYLAGLTPSEF+FHAMGGRE L
Sbjct: 223 NVEGKRIPFGFRKRTLPHFINEDYGPESRGFVXNSYLAGLTPSEFYFHAMGGRESL 278
>gi|317417188|emb|CBI70624.1| RNA polymerase II [Adicella sp. NHRS BS3]
Length = 267
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS LAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSXLAGLTPSEFYFHAMGGR 267
>gi|283476432|emb|CAY54370.1| RNA polymerase 2 [Agmina hastata]
gi|289779629|emb|CAX52863.1| RNA polymerase II large subunit [Daternomina thinotes]
Length = 257
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+F AMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFXAMGGR 257
>gi|317417224|emb|CBI70642.1| RNA polymerase II [Notoperata sp. NHRS CW6]
Length = 267
Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMG R
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGRR 267
>gi|317417226|emb|CBI70643.1| RNA polymerase II [Notoperata sp. NHRS CW8]
Length = 267
Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMG R
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGRR 267
>gi|194460375|gb|ACF71862.1| RNA polymerase II [Eufriesea pulchra]
Length = 276
Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 108/114 (94%), Positives = 112/114 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 116
NVEGKRIPFGFRKRTLPHFIKDDYG ESRGFVENSYLAGLTPSEF+FHA+GGRE
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGXESRGFVENSYLAGLTPSEFYFHAVGGRE 276
>gi|309755792|gb|ADO86730.1| RNA polymerase II [Agmina sp. 26 ME-2010]
Length = 255
Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 107/111 (96%), Positives = 110/111 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMG 113
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMG
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 255
>gi|317417208|emb|CBI70634.1| RNA polymerase II [Hudsonema flaminii]
Length = 267
Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 107/113 (94%), Positives = 112/113 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILN+ARDKTGGSAKKSLTE+NNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNNARDKTGGSAKKSLTEFNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|309755536|gb|ADO86602.1| RNA polymerase II [Agmina sp. 18 ME-2010]
Length = 257
Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 107/113 (94%), Positives = 110/113 (97%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEG RIPFGFRKRTLPHF KDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGXRIPFGFRKRTLPHFXKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|283549551|emb|CAX62855.1| RNA polymerase 2 [Beraeamyia squamosa]
Length = 257
Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 107/113 (94%), Positives = 110/113 (97%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTF NQVNRILNDARDKTGGSAKKSLTEYNNL AMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFXNQVNRILNDARDKTGGSAKKSLTEYNNLXAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|194460331|gb|ACF71840.1| RNA polymerase II [Euglossa natesi]
Length = 274
Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 107/112 (95%), Positives = 111/112 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 114
NV+GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGG
Sbjct: 223 NVKGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGG 274
>gi|31127042|gb|AAF26663.2|AF139013_1 RNA polymerase II largest subunit [Tanystylum orbiculare]
Length = 624
Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 109/127 (85%), Positives = 116/127 (91%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG SA+KSL+E+NN KAMVV+GSKGS INISQVIACVGQQ
Sbjct: 371 TLRQTFENQVNRILNDARDKTGSSAQKSLSEFNNFKAMVVSGSKGSKINISQVIACVGQQ 430
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPF FRKRTLPHFIK P SRGFVENSYL+GLTP+EFFFHAMGGREGLIDTA
Sbjct: 431 NVEGKRIPFVFRKRTLPHFIKXXXXPXSRGFVENSYLSGLTPAEFFFHAMGGREGLIDTA 490
Query: 123 VKTAETA 129
VKTAET
Sbjct: 491 VKTAETG 497
>gi|283476444|emb|CAY54376.1| RNA polymerase 2 [Daternomina sp. GM8]
Length = 257
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/113 (94%), Positives = 110/113 (97%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFEN VNRILNDARDKTGGSAKKSLT YNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENXVNRILNDARDKTGGSAKKSLTXYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|317417232|emb|CBI70646.1| RNA polymerase II [Triplectidina nigricornis]
Length = 267
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/113 (94%), Positives = 111/113 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+G+KGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGAKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMG R
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGRR 267
>gi|309755582|gb|ADO86625.1| RNA polymerase II [Agmina kara]
Length = 257
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/113 (94%), Positives = 110/113 (97%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQV RILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVXRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NV GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVXGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|283549605|emb|CAX62882.1| RNA polymerase 2 [Caloca saneva]
Length = 257
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/112 (95%), Positives = 110/112 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 114
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+ HAMGG
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYXHAMGG 256
>gi|194460290|gb|ACF71820.1| RNA polymerase II [Eufriesea superba]
Length = 230
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/117 (91%), Positives = 113/117 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L QTFENQVNRILNDARDKTGG AKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 114 LIQTFENQVNRILNDARDKTGGPAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 173
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
+EGK IPFGFRK+TLPHFIKDDYGPES+GF+ENS LAGLTPSEF+FHAMGGREGLID
Sbjct: 174 LEGKXIPFGFRKKTLPHFIKDDYGPESKGFLENSNLAGLTPSEFYFHAMGGREGLID 230
>gi|289779495|emb|CAX52791.1| RNA polymerase II large subunit [Tinodes waeneri]
Length = 257
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/113 (94%), Positives = 110/113 (97%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINIS VIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISXVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIK DYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKXDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 257
>gi|289779613|emb|CAX52854.1| RNA polymerase II large subunit [Agmina diriwi]
Length = 257
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/113 (94%), Positives = 110/113 (97%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIK DYGPESRGFV NSYLAGLTPSEF+FHAMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKXDYGPESRGFVXNSYLAGLTPSEFYFHAMGGR 257
>gi|317417256|emb|CBI70658.1| RNA polymerase II [Triplectidina nigricornis]
Length = 267
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 106/111 (95%), Positives = 110/111 (99%)
Query: 5 KQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 64
+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+G+KGSNINISQVIACVGQQ V
Sbjct: 157 RQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGAKGSNINISQVIACVGQQXV 216
Query: 65 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 217 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|317417150|emb|CBI70605.1| RNA polymerase II [Tasimia palpata]
Length = 267
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 107/113 (94%), Positives = 110/113 (97%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
VEGKRIPFGFRKRTLPHFIKDD GPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 215 XVEGKRIPFGFRKRTLPHFIKDDXGPESRGFVENSYLAGLTPSEFYFHAMGGR 267
>gi|289779587|emb|CAX52841.1| RNA polymerase II large subunit [Ecnomus sp. EK7]
Length = 257
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 107/113 (94%), Positives = 110/113 (97%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGS INISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSXINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 115
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+F AMGGR
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFXAMGGR 257
>gi|194460311|gb|ACF71830.1| RNA polymerase II [Euglossa perfulgens]
Length = 276
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 106/114 (92%), Positives = 109/114 (95%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 116
NVEGKRIPFGFRKRT PHF DDYGPESRGFVENSYL GLTPSEF+FHAMGGRE
Sbjct: 223 NVEGKRIPFGFRKRTXPHFXXDDYGPESRGFVENSYLVGLTPSEFYFHAMGGRE 276
>gi|321459276|gb|EFX70331.1| hypothetical protein DAPPUDRAFT_328199 [Daphnia pulex]
Length = 1457
Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 107/125 (85%), Positives = 117/125 (93%), Gaps = 1/125 (0%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QT ENQVNRIL DAR++TGGSAK SLTE+NNLKAMVVAGS GSN+NISQVIACVGQQN
Sbjct: 708 LQQTLENQVNRILIDARNETGGSAKNSLTEFNNLKAMVVAGSSGSNVNISQVIACVGQQN 767
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDD+GPESRGFVENSY++GLTPSEF+FHAM R+ LIDTAV
Sbjct: 768 VEGKRIPFGFRKRTLPHFIKDDFGPESRGFVENSYVSGLTPSEFYFHAM-DRKALIDTAV 826
Query: 124 KTAET 128
KTA T
Sbjct: 827 KTANT 831
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 82/91 (90%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGE T+MT+NTFHFAGVSSKNVTLGV RLKEIINISK PK PS
Sbjct: 1053 AQAQPGEMVGALAAQSLGERPTKMTVNTFHFAGVSSKNVTLGVARLKEIINISKSPKTPS 1112
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+TVFL GQAARDAEKAKNVLCRLEHTTLR V
Sbjct: 1113 MTVFLKGQAARDAEKAKNVLCRLEHTTLRMV 1143
>gi|324500036|gb|ADY40031.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 1840
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/125 (84%), Positives = 116/125 (92%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L QTFE+++N ILN+ARD+TG SA++SL+ NN KAMVVAGSKGS INISQVIACVGQQN
Sbjct: 746 LLQTFESKINNILNNARDRTGSSAQRSLSADNNFKAMVVAGSKGSKINISQVIACVGQQN 805
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFI+DD GPE++GFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 806 VEGKRIPFGFRHRTLPHFIRDDCGPEAKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 865
Query: 124 KTAET 128
KTAET
Sbjct: 866 KTAET 870
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 75/87 (86%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SKKPK PSLT+F
Sbjct: 1096 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTIF 1155
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L D +A ++ CR+EH TLRKV
Sbjct: 1156 LAPGLGSDVRRANDLQCRMEHCTLRKV 1182
>gi|321468706|gb|EFX79690.1| hypothetical protein DAPPUDRAFT_244675 [Daphnia pulex]
Length = 475
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/127 (84%), Positives = 117/127 (92%), Gaps = 1/127 (0%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QT ENQVNRIL DAR++TGGSAK SLTE+NNLKAMVVAGS GSN+NISQVIACVGQQ
Sbjct: 324 TLRQTLENQVNRILIDARNETGGSAKNSLTEFNNLKAMVVAGSSGSNVNISQVIACVGQQ 383
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFRKRTLPHFIKDD+GPESRGFVENSY++GLTPSEF+FHAM R+ LIDTA
Sbjct: 384 NVEGKRIPFGFRKRTLPHFIKDDFGPESRGFVENSYVSGLTPSEFYFHAM-DRKALIDTA 442
Query: 123 VKTAETA 129
VKTA T
Sbjct: 443 VKTANTG 449
>gi|309755660|gb|ADO86664.1| RNA polymerase II [Ecnomus sp. ME-2010]
Length = 253
Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/109 (96%), Positives = 108/109 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 111
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHA
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 253
>gi|259016098|gb|ACV89329.1| RNA polymerase II 215kD subunit [Microchorista philpotti]
Length = 250
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/109 (96%), Positives = 108/109 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 142 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 201
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 111
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHA
Sbjct: 202 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 250
>gi|194460480|gb|ACF71914.1| RNA polymerase II [Euglossa modestior]
Length = 227
Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/115 (92%), Positives = 111/115 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVN+ILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 113 LRQTFENQVNKILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 172
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGL 118
VEGKRI FGF +TLPHFIKDDYGPESRGFVENSYLAGLTPSEF+F AMGGREGL
Sbjct: 173 VEGKRILFGFPXKTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFPAMGGREGL 227
>gi|194460303|gb|ACF71826.1| RNA polymerase II [Euglossa cordata]
Length = 269
Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 103/107 (96%), Positives = 106/107 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFF 109
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+F
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYF 269
>gi|194460482|gb|ACF71915.1| RNA polymerase II [Eufriesea macroglossa]
Length = 269
Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 103/107 (96%), Positives = 106/107 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFF 109
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+F
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYF 269
>gi|259016120|gb|ACV89340.1| RNA polymerase II 215kD subunit [Blattella germanica]
Length = 290
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/106 (97%), Positives = 105/106 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 185 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 244
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 108
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF
Sbjct: 245 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 290
>gi|259016114|gb|ACV89337.1| RNA polymerase II 215kD subunit [Heliothis virescens]
Length = 290
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/106 (97%), Positives = 105/106 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 185 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 244
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 108
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+
Sbjct: 245 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFY 290
>gi|68300816|gb|AAY89349.1| RNA polymerase II largest subunit [Antirrhinum majus]
Length = 780
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/126 (80%), Positives = 112/126 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E+NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 405 MMESFENRVNQVLNKARDDAGSSAQKSLSEHNNLKAMVTAGSKGSFINISQMTACVGQQN 464
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 465 VEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 524
Query: 124 KTAETA 129
KT+ET
Sbjct: 525 KTSETG 530
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 24/27 (88%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTF 160
A GEM+G +AAQS+GEPATQMTLNTF
Sbjct: 754 VAAGEMIGCVAAQSIGEPATQMTLNTF 780
>gi|16494|emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 1860
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 102/125 (81%), Positives = 110/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
++ TFEN+VN++LN ARD G SA+KSL E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 750 MRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQN 809
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 810 VEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 869
Query: 124 KTAET 128
KT+ET
Sbjct: 870 KTSET 874
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 76/88 (86%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G + AQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K+ K PSL+V
Sbjct: 1100 APGEMIGCVPAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSV 1159
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+LT +A++ E AK V C LE+TTLR V
Sbjct: 1160 YLTPEASKSKEGAKTVQCALEYTTLRSV 1187
>gi|4883421|emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana]
gi|7270532|emb|CAB81489.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana]
Length = 1840
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 102/125 (81%), Positives = 110/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
++ TFEN+VN++LN ARD G SA+KSL E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 730 MRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQN 789
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 790 VEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 849
Query: 124 KTAET 128
KT+ET
Sbjct: 850 KTSET 854
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 77/88 (87%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K+ K PSL+V
Sbjct: 1080 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSV 1139
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+LT +A++ E AK V C LE+TTLR V
Sbjct: 1140 YLTPEASKSKEGAKTVQCALEYTTLRSV 1167
>gi|316997019|dbj|BAJ52637.1| RNA polymerase II largest subunit [Monosiga ovata]
Length = 1289
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 102/125 (81%), Positives = 112/125 (89%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L QTFE VN ILN AR++TG A+KSL+E+NN KAM +AGSKGS++NISQVIACVGQQN
Sbjct: 243 LLQTFELTVNEILNKAREETGSDAEKSLSEFNNFKAMAIAGSKGSSLNISQVIACVGQQN 302
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFV NSYLAGL+P EFFFHAMGGREGLIDTAV
Sbjct: 303 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVFNSYLAGLSPQEFFFHAMGGREGLIDTAV 362
Query: 124 KTAET 128
KTA T
Sbjct: 363 KTATT 367
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 74/91 (81%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAA+ LGEP TQMTLNTFH+AGVSSKNVTLGVPRL+EIIN+SK PK PS
Sbjct: 594 ARAHPGEMVGALAAECLGEPLTQMTLNTFHYAGVSSKNVTLGVPRLQEIINVSKAPKTPS 653
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
L ++L G+A D +AK VL LE TLR+V
Sbjct: 654 LVIYLLGEAVSDKNEAKKVLNELELCTLRQV 684
>gi|334187204|ref|NP_195305.2| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
gi|322510106|sp|P18616.3|RPB1_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|332661173|gb|AEE86573.1| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
Length = 1839
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 102/125 (81%), Positives = 110/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
++ TFEN+VN++LN ARD G SA+KSL E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 729 MRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQN 788
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 789 VEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 848
Query: 124 KTAET 128
KT+ET
Sbjct: 849 KTSET 853
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 77/88 (87%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K+ K PSL+V
Sbjct: 1079 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSV 1138
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+LT +A++ E AK V C LE+TTLR V
Sbjct: 1139 YLTPEASKSKEGAKTVQCALEYTTLRSV 1166
>gi|33326217|gb|AAQ08518.1| RNA polymerase II largest subunit [Amborella trichopoda]
Length = 1013
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/125 (80%), Positives = 111/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 650 MMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 709
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 710 VEGKRIPFGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 124 KTAET 128
KT+ET
Sbjct: 770 KTSET 774
>gi|297798336|ref|XP_002867052.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata]
gi|297312888|gb|EFH43311.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata]
Length = 1839
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 102/126 (80%), Positives = 110/126 (87%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ +TFEN+VN++LN ARD G SA+KSL E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 730 MTETFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQN 789
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 790 VEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 849
Query: 124 KTAETA 129
KT+ET
Sbjct: 850 KTSETG 855
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 77/88 (87%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K+ K PSL+V
Sbjct: 1080 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSV 1139
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+LT +A++ E AK V C LE+TTLR V
Sbjct: 1140 YLTPEASKSKEGAKTVQCALEYTTLRSV 1167
>gi|326498629|dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1859
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 101/125 (80%), Positives = 111/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 728 MMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 787
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 788 VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 847
Query: 124 KTAET 128
KT+ET
Sbjct: 848 KTSET 852
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 77/90 (85%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+V
Sbjct: 1078 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1137
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKVLY 224
FL + ++ E AKNV C LE+TTLR V +
Sbjct: 1138 FLKPEVSKKKELAKNVQCALEYTTLRSVTH 1167
>gi|68300819|gb|AAY89350.1| RNA polymerase II largest subunit [Solanum lycopersicum]
Length = 773
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 101/126 (80%), Positives = 111/126 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 405 MMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 464
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 465 VEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 524
Query: 124 KTAETA 129
KT+ET
Sbjct: 525 KTSETG 530
>gi|188532151|gb|ACD63087.1| RNA polymerase II largest subunit [Nicotiana tabacum]
Length = 1010
Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 101/125 (80%), Positives = 111/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 647 MMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 706
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 707 VEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 766
Query: 124 KTAET 128
KT+ET
Sbjct: 767 KTSET 771
>gi|218200495|gb|EEC82922.1| hypothetical protein OsI_27866 [Oryza sativa Indica Group]
Length = 1449
Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 101/126 (80%), Positives = 111/126 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 698 MMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 757
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 758 VEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 817
Query: 124 KTAETA 129
KT+ET
Sbjct: 818 KTSETG 823
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 76/90 (84%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+V
Sbjct: 1048 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1107
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKVLY 224
+L + + E AKNV C LE+TTLR V +
Sbjct: 1108 YLKPEVNKKKELAKNVQCALEYTTLRSVTH 1137
>gi|16505|emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana]
Length = 1841
Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 101/125 (80%), Positives = 110/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
++ TFEN+V+++LN ARD G SA+KSL E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 724 MRDTFENRVDQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQN 783
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 784 VEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 843
Query: 124 KTAET 128
KT+ET
Sbjct: 844 KTSET 848
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 77/88 (87%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K+ K PSL+V
Sbjct: 1074 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSV 1133
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+LT +A++ E AK V C LE+TTLR V
Sbjct: 1134 YLTPEASKSKEGAKTVQCALEYTTLRSV 1161
>gi|302794771|ref|XP_002979149.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
gi|300152917|gb|EFJ19557.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
Length = 1764
Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 100/125 (80%), Positives = 113/125 (90%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD+ G SA+KSL+E NN+KAMV AGSKGS INISQ+IACVGQQN
Sbjct: 747 MMESFENRVNQVLNRARDEAGSSAQKSLSESNNVKAMVTAGSKGSFINISQMIACVGQQN 806
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDTAV
Sbjct: 807 VEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAV 866
Query: 124 KTAET 128
KT+ET
Sbjct: 867 KTSET 871
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 76/88 (86%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL V
Sbjct: 1097 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLYV 1156
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + +++ E+AKNV C LE+TTLR V
Sbjct: 1157 HLKPEVSKEKERAKNVQCALEYTTLRSV 1184
>gi|242078217|ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
gi|241940227|gb|EES13372.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
Length = 1857
Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 101/125 (80%), Positives = 111/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 727 MMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 846
Query: 124 KTAET 128
KT+ET
Sbjct: 847 KTSET 851
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 76/90 (84%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+V
Sbjct: 1077 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1136
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKVLY 224
+L + + E AKNV C LE+TTLR V +
Sbjct: 1137 YLKPEVNQKKELAKNVQCALEYTTLRSVTH 1166
>gi|259016128|gb|ACV89344.1| RNA polymerase II 215kD subunit [Bittacidae sp. BMW-2009]
Length = 249
Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 102/105 (97%), Positives = 104/105 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 107
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 249
>gi|449524332|ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Cucumis sativus]
Length = 1853
Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 101/125 (80%), Positives = 110/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ +FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 728 MMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 787
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 788 VEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 847
Query: 124 KTAET 128
KT+ET
Sbjct: 848 KTSET 852
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 76/88 (86%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K+ K PSL+V
Sbjct: 1078 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSV 1137
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+L +A + E+AK V C LE+TTLR V
Sbjct: 1138 YLKPEANKTKERAKTVQCALEYTTLRSV 1165
>gi|449456849|ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 101/125 (80%), Positives = 110/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ +FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 728 MMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 787
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 788 VEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 847
Query: 124 KTAET 128
KT+ET
Sbjct: 848 KTSET 852
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 76/88 (86%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K+ K PSL+V
Sbjct: 1078 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSV 1137
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+L +A + E+AK V C LE+TTLR V
Sbjct: 1138 YLKPEANKTKERAKTVQCALEYTTLRSV 1165
>gi|302141712|emb|CBI18915.3| unnamed protein product [Vitis vinifera]
Length = 1565
Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 100/125 (80%), Positives = 111/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 776 MMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 835
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 836 VEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 895
Query: 124 KTAET 128
KT+ET
Sbjct: 896 KTSET 900
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 76/88 (86%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+V
Sbjct: 1007 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1066
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+L ++ E+AKNV C LE+TTLR V
Sbjct: 1067 YLKPDVSKTKERAKNVQCALEYTTLRSV 1094
>gi|302813666|ref|XP_002988518.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
gi|300143625|gb|EFJ10314.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
Length = 1797
Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 100/125 (80%), Positives = 113/125 (90%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD+ G SA+KSL+E NN+KAMV AGSKGS INISQ+IACVGQQN
Sbjct: 739 MMESFENRVNQVLNRARDEAGSSAQKSLSESNNVKAMVTAGSKGSFINISQMIACVGQQN 798
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDTAV
Sbjct: 799 VEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAV 858
Query: 124 KTAET 128
KT+ET
Sbjct: 859 KTSET 863
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 76/88 (86%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL V
Sbjct: 1089 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLYV 1148
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + +++ E+AKNV C LE+TTLR V
Sbjct: 1149 HLKPEVSKEKERAKNVQCALEYTTLRSV 1176
>gi|33326215|gb|AAQ08517.1| RNA polymerase II largest subunit [Nymphaea odorata]
Length = 1013
Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 100/125 (80%), Positives = 111/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA++SL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 650 MMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 709
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 710 VEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 124 KTAET 128
KT+ET
Sbjct: 770 KTSET 774
>gi|194460436|gb|ACF71892.1| RNA polymerase II [Euglossa azureoviridis]
Length = 267
Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 102/105 (97%), Positives = 104/105 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 107
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 267
>gi|194460323|gb|ACF71836.1| RNA polymerase II [Euglossa flammea]
Length = 269
Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 101/107 (94%), Positives = 105/107 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFF 109
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGF +NSYLAGLTPSEF+F
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFXKNSYLAGLTPSEFYF 269
>gi|33326219|gb|AAQ08519.1| RNA polymerase II largest subunit [Psilotum nudum]
Length = 1013
Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 100/124 (80%), Positives = 111/124 (89%)
Query: 6 QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVE 65
++FEN+VN++LN ARD G SA++SL+E NN+KAMV AGSKGS INISQ+IACVGQQNVE
Sbjct: 652 ESFENRVNQVLNRARDDAGSSAQRSLSESNNVKAMVTAGSKGSFINISQMIACVGQQNVE 711
Query: 66 GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 125
GKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT
Sbjct: 712 GKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 771
Query: 126 AETA 129
+ET
Sbjct: 772 SETG 775
>gi|222639938|gb|EEE68070.1| hypothetical protein OsJ_26086 [Oryza sativa Japonica Group]
Length = 804
Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 101/126 (80%), Positives = 111/126 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 659 MMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 718
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 719 VEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 778
Query: 124 KTAETA 129
KT+ET
Sbjct: 779 KTSETG 784
>gi|255579596|ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis]
gi|223529812|gb|EEF31747.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/125 (80%), Positives = 111/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 728 MMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 787
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 788 VEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 847
Query: 124 KTAET 128
KT+ET
Sbjct: 848 KTSET 852
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 76/88 (86%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL++
Sbjct: 1078 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSI 1137
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
FL + + E+AKNV C LE+TTLR V
Sbjct: 1138 FLIPECNKTKERAKNVQCALEYTTLRSV 1165
>gi|225459758|ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/125 (80%), Positives = 111/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 728 MMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 787
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 788 VEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 847
Query: 124 KTAET 128
KT+ET
Sbjct: 848 KTSET 852
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 76/88 (86%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+V
Sbjct: 1078 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1137
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+L ++ E+AKNV C LE+TTLR V
Sbjct: 1138 YLKPDVSKTKERAKNVQCALEYTTLRSV 1165
>gi|188532147|gb|ACD63085.1| RNA polymerase II largest subunit [Illicium parviflorum]
Length = 1013
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 111/126 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 650 MMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 709
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 710 VEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 124 KTAETA 129
KT+ET
Sbjct: 770 KTSETG 775
>gi|188532149|gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron tulipifera]
Length = 1010
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 111/126 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 647 MMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 706
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 707 VEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 766
Query: 124 KTAETA 129
KT+ET
Sbjct: 767 KTSETG 772
>gi|188532153|gb|ACD63088.1| RNA polymerase II largest subunit [Papaver orientale]
Length = 1010
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/127 (78%), Positives = 111/127 (87%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQ
Sbjct: 646 TMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 705
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIP+GF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTA
Sbjct: 706 NVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 765
Query: 123 VKTAETA 129
VKT+ET
Sbjct: 766 VKTSETG 772
>gi|68300797|gb|AAY89341.1| RNA polymerase II largest subunit [Rhododendron macrophyllum]
Length = 589
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 110/126 (87%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 237 MMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMTACVGQQN 296
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 297 VEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 356
Query: 124 KTAETA 129
KT+ET
Sbjct: 357 KTSETG 362
>gi|33326213|gb|AAQ08516.1| RNA polymerase II largest subunit [Magnolia x soulangeana]
Length = 1010
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/127 (78%), Positives = 111/127 (87%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQ
Sbjct: 646 TMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 705
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIP+GF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTA
Sbjct: 706 NVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 765
Query: 123 VKTAETA 129
VKT+ET
Sbjct: 766 VKTSETG 772
>gi|188532141|gb|ACD63082.1| RNA polymerase II largest subunit [Beta vulgaris]
Length = 1012
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 111/126 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 649 MMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 708
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 709 VEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 768
Query: 124 KTAETA 129
KT+ET
Sbjct: 769 KTSETG 774
>gi|168066799|ref|XP_001785319.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663074|gb|EDQ49860.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1742
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 101/125 (80%), Positives = 110/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+K++FEN+VN ILN ARD G SA+KSL E NNLKAMV AGSKG+ INISQ+ ACVGQQN
Sbjct: 731 MKESFENRVNGILNKARDDAGASAQKSLAESNNLKAMVTAGSKGTFINISQMTACVGQQN 790
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 791 VEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 850
Query: 124 KTAET 128
KT+ET
Sbjct: 851 KTSET 855
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 76/88 (86%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFHFAGVS+KNVTLGVPRL+EIIN++KK K PSLTV
Sbjct: 1081 APGEMIGCVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKIKTPSLTV 1140
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+L ++ E+AKNV C LE+TTLR V
Sbjct: 1141 YLKPGVNKEKERAKNVQCALEYTTLRSV 1168
>gi|1945435|gb|AAC49712.1| RNA polymerase II largest subunit [Spirogyra sp.]
Length = 613
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/125 (80%), Positives = 111/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L ++FEN+VN++LN ARD G +A+ SL+E NN+KAMV AGSKGS INISQ+IACVGQQN
Sbjct: 238 LMESFENRVNQVLNKARDDAGRAAQSSLSESNNVKAMVTAGSKGSFINISQMIACVGQQN 297
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 298 VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 357
Query: 124 KTAET 128
KT+ET
Sbjct: 358 KTSET 362
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 27/29 (93%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTF 160
++ APGEM+G +AAQS+GEPATQMTLNTF
Sbjct: 585 SQVAPGEMIGCVAAQSIGEPATQMTLNTF 613
>gi|66815437|ref|XP_641735.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
gi|166202448|sp|P35084.2|RPB1_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III subunit A
gi|60469758|gb|EAL67745.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
Length = 1727
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/123 (81%), Positives = 110/123 (89%)
Query: 6 QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVE 65
+TFE +VN++LN ARD G SA+ SL+E NNLKAMV AGSKGS INISQ++ACVGQQNVE
Sbjct: 721 ETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQMMACVGQQNVE 780
Query: 66 GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 125
GKRIPFGF+ RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT
Sbjct: 781 GKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 840
Query: 126 AET 128
+ET
Sbjct: 841 SET 843
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 75/87 (86%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIINI+K+ K PSLT++
Sbjct: 1079 PGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQVKTPSLTIY 1138
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L ARD ++AK V +LE+TTL V
Sbjct: 1139 LKPHMARDMDRAKIVKSQLEYTTLANV 1165
>gi|188532143|gb|ACD63083.1| RNA polymerase II largest subunit [Ceratophyllum demersum]
Length = 1010
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 111/126 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 647 MMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 706
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 707 VEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 766
Query: 124 KTAETA 129
KT+ET
Sbjct: 767 KTSETG 772
>gi|45935333|gb|AAS79688.1| RNA polymerase II large subunit [Ephedra viridis]
Length = 1013
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/127 (78%), Positives = 112/127 (88%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L ++FENQVN++LN ARD G SA++SL+E NNLKAMV AGSKGS INISQ+ ACVGQQ
Sbjct: 649 TLLESFENQVNQVLNKARDDAGNSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 708
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIP+GF+ RTLPHF+KDD GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTA
Sbjct: 709 NVEGKRIPYGFQGRTLPHFVKDDKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 768
Query: 123 VKTAETA 129
VKT+ET
Sbjct: 769 VKTSETG 775
>gi|330795314|ref|XP_003285719.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
gi|325084350|gb|EGC37780.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
Length = 1755
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/126 (78%), Positives = 112/126 (88%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
++ +TFE +VN++LN ARD G SA+ SL+E NNLKAMV AGSKGS INISQ++ACVGQQ
Sbjct: 719 SVMETFEQKVNQVLNKARDTAGSSAQNSLSEANNLKAMVTAGSKGSFINISQMMACVGQQ 778
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKR+PFGF+ RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTA
Sbjct: 779 NVEGKRVPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 838
Query: 123 VKTAET 128
VKT+ET
Sbjct: 839 VKTSET 844
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 74/91 (81%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVGALAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIINI+K+ K PS
Sbjct: 1076 ALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQVKTPS 1135
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LT++L ARD + AK V LE+TTL V
Sbjct: 1136 LTIYLKPHIARDMDCAKTVKSHLEYTTLANV 1166
>gi|328867419|gb|EGG15801.1| RNA polymerase II largest subunit [Dictyostelium fasciculatum]
Length = 1701
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 112/126 (88%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
++ ++FE +VNR+LN ARD G SA+KSL E NN+KAMV AGSKGS INISQ++ACVGQQ
Sbjct: 691 SMLESFEKEVNRVLNTARDDAGTSAQKSLQESNNVKAMVNAGSKGSFINISQMMACVGQQ 750
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF+ RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTA
Sbjct: 751 NVEGKRIPFGFQNRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 810
Query: 123 VKTAET 128
VKT+ET
Sbjct: 811 VKTSET 816
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 78/87 (89%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN++K K PSLT++
Sbjct: 1059 PGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAKNVKTPSLTIY 1118
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L ARD+EKAK+V C+LE+TT+ +V
Sbjct: 1119 LQPDIARDSEKAKSVQCQLEYTTMARV 1145
>gi|168053159|ref|XP_001779005.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669567|gb|EDQ56151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1646
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/126 (78%), Positives = 112/126 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+K++FEN+VN +LN ARD+ G SA++SL+E NNLKAMV AGSKG+ INISQ+ ACVGQQN
Sbjct: 731 MKESFENRVNGVLNKARDEAGASAQRSLSESNNLKAMVTAGSKGTFINISQMTACVGQQN 790
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 791 VEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 850
Query: 124 KTAETA 129
KT+ET
Sbjct: 851 KTSETG 856
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 76/88 (86%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFHFAGVS+KNVTLGVPRL+EIIN++KK K PSLTV
Sbjct: 1066 APGEMIGCVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKTKTPSLTV 1125
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
FL ++ EKAKNV C LE+TTLR V
Sbjct: 1126 FLKPGINKEKEKAKNVQCALEYTTLRSV 1153
>gi|259016104|gb|ACV89332.1| RNA polymerase II 215kD subunit [Halictophagidae sp. BMW-2009]
Length = 290
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/106 (95%), Positives = 103/106 (97%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTG SAKKSLTEYNNLK MVVAGSKGSNINISQVIACVGQQ
Sbjct: 185 TLRQTFENQVNRILNDARDKTGASAKKSLTEYNNLKTMVVAGSKGSNINISQVIACVGQQ 244
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 108
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+
Sbjct: 245 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFY 290
>gi|357144975|ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Brachypodium distachyon]
Length = 1862
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/125 (80%), Positives = 111/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 729 MMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 788
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF K+DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 789 VEGKRIPFGFVDRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 848
Query: 124 KTAET 128
KT+ET
Sbjct: 849 KTSET 853
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 77/90 (85%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+V
Sbjct: 1079 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1138
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKVLY 224
FL + ++ E AKNV C LE+TTLR V +
Sbjct: 1139 FLKPEVSKKKELAKNVQCALEYTTLRSVTH 1168
>gi|188532157|gb|ACD63090.1| RNA polymerase II largest subunit [Pisum sativum]
Length = 1010
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/127 (79%), Positives = 109/127 (85%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+ +FEN+VN+ LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQ
Sbjct: 646 TMMDSFENRVNQTLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 705
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTA
Sbjct: 706 NVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 765
Query: 123 VKTAETA 129
VKT+ET
Sbjct: 766 VKTSETG 772
>gi|413917378|gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
Length = 1850
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/125 (80%), Positives = 110/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+ SL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 727 MMESFENRVNQVLNKARDDAGSSAQNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 846
Query: 124 KTAET 128
KT+ET
Sbjct: 847 KTSET 851
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 76/90 (84%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+V
Sbjct: 1077 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1136
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKVLY 224
+L Q + E AKNV C LE+TTLR V +
Sbjct: 1137 YLKPQVNQKKELAKNVQCALEYTTLRSVTH 1166
>gi|83320434|gb|ABC02844.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
Length = 1015
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/128 (78%), Positives = 113/128 (88%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFEN+VNR LN ARD +G SA+KSL E NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 648 MTIRETFENKVNRELNRARDHSGRSAEKSLKEENNVKQMVVSGSKGSFINISQMSACVGQ 707
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDT
Sbjct: 708 QNVEGKRIPFGFKFRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDT 767
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 768 AVKTAETG 775
>gi|33326211|gb|AAQ08515.1| RNA polymerase II largest subunit [Zea mays]
Length = 1009
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 100/127 (78%), Positives = 110/127 (86%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+ ++FEN+VN++LN ARD G SA+ SL+E NNLKAMV AGSKGS INISQ+ ACVGQQ
Sbjct: 645 TMMESFENRVNQVLNKARDDAGSSAQNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 704
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTA
Sbjct: 705 NVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 764
Query: 123 VKTAETA 129
VKT+ET
Sbjct: 765 VKTSETG 771
>gi|71480584|gb|AAZ32217.1| RNA polymerase II large subunit [Apis mellifera]
Length = 296
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/104 (97%), Positives = 103/104 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 193 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 252
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 106
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 253 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 296
>gi|357483939|ref|XP_003612256.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355513591|gb|AES95214.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 1864
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/125 (80%), Positives = 109/125 (87%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ +FEN+VN+ LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 746 MMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 805
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 806 VEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 865
Query: 124 KTAET 128
KT+ET
Sbjct: 866 KTSET 870
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 75/88 (85%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
A GEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K+ K PSL+V
Sbjct: 1096 ASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSV 1155
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+L + + E+AKNV C LE+TTLR V
Sbjct: 1156 YLKPEVCKTKERAKNVQCALEYTTLRSV 1183
>gi|62911521|gb|AAY21391.1| RNA polymerase II [Anthophora montana]
gi|62911523|gb|AAY21392.1| RNA polymerase II [Anacrabro ocellatus]
gi|62911557|gb|AAY21409.1| RNA polymerase II [Colletes skinneri]
gi|62911565|gb|AAY21413.1| RNA polymerase II [Dasypoda argentata]
gi|62911567|gb|AAY21414.1| RNA polymerase II [Dasypoda hirtipes]
gi|62911605|gb|AAY21433.1| RNA polymerase II [Leioproctus plumosus]
gi|62911611|gb|AAY21436.1| RNA polymerase II [Leioproctus sp. BND-2004]
gi|62911615|gb|AAY21438.1| RNA polymerase II [Leiopodus singularis]
gi|62911629|gb|AAY21445.1| RNA polymerase II [Meganomia binghami]
gi|62911679|gb|AAY21470.1| RNA polymerase II [Thyreus delumbatus]
gi|62911685|gb|AAY21473.1| RNA polymerase II [Tachysphex yolo]
gi|62911699|gb|AAY21480.1| RNA polymerase II [Coelioxys afra]
gi|62911713|gb|AAY21487.1| RNA polymerase II [Hesperapis rhodocerata]
gi|71480588|gb|AAZ32219.1| RNA polymerase II large subunit [Zacosmia maculata]
Length = 296
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/104 (97%), Positives = 103/104 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 193 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 252
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 106
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 253 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 296
>gi|62911601|gb|AAY21431.1| RNA polymerase II [Goniocolletes fimbriatinus]
gi|62911607|gb|AAY21434.1| RNA polymerase II [Goniocolletes perfasciatus]
gi|62911705|gb|AAY21483.1| RNA polymerase II [Dieunomia heteropoda]
gi|62911707|gb|AAY21484.1| RNA polymerase II [Dieunomia nevadensis]
gi|62911749|gb|AAY21505.1| RNA polymerase II [Sphecodes pecosensis]
gi|62911753|gb|AAY21507.1| RNA polymerase II [Patellapis (Zonalictus) sp. BND-2006]
gi|71480572|gb|AAZ32211.1| RNA polymerase II large subunit [Lipotriches patellifera]
Length = 296
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/104 (97%), Positives = 103/104 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 193 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 252
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 106
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 253 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 296
>gi|62911589|gb|AAY21425.1| RNA polymerase II [Holcopasites ruthae]
gi|62911727|gb|AAY21494.1| RNA polymerase II [Meliturgula minima]
gi|62911729|gb|AAY21495.1| RNA polymerase II [Meliturgula haematospila]
Length = 296
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/104 (97%), Positives = 103/104 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 193 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 252
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 106
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 253 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 296
>gi|62911525|gb|AAY21393.1| RNA polymerase II [Andrena brooksi]
Length = 296
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/104 (97%), Positives = 103/104 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 193 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 252
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 106
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 253 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 296
>gi|62911625|gb|AAY21443.1| RNA polymerase II [Melitta leporina]
Length = 296
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/104 (97%), Positives = 103/104 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 193 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 252
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 106
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 253 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 296
>gi|62911569|gb|AAY21415.1| RNA polymerase II [Dasypoda visnaga]
Length = 294
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/104 (97%), Positives = 103/104 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 191 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 250
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 106
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 251 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 294
>gi|188532155|gb|ACD63089.1| RNA polymerase II largest subunit [Persea americana]
Length = 1009
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 99/127 (77%), Positives = 110/127 (86%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQ
Sbjct: 645 TMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 704
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIP+GF RTLPHF KDDYGPE RGFVENSYL GLTP EFFFHAMGGREGLIDTA
Sbjct: 705 NVEGKRIPYGFNGRTLPHFTKDDYGPEXRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 764
Query: 123 VKTAETA 129
VKT+ET
Sbjct: 765 VKTSETG 771
>gi|120561219|gb|ABM26995.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
Length = 1018
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/128 (78%), Positives = 113/128 (88%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFEN+VNR LN ARD +G SA+KSL E NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 646 MTIRETFENKVNRELNRARDHSGRSAEKSLKEENNVKQMVVSGSKGSFINISQMSACVGQ 705
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDT
Sbjct: 706 QNVEGKRIPFGFKFRTLPHFSKDDYGPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDT 765
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 766 AVKTAETG 773
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 26/37 (70%), Gaps = 6/37 (16%)
Query: 117 GLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPAT 153
G I+T +TA+ A PGEMVG +AAQS+GEPAT
Sbjct: 988 GEIETRFQTAQVA------PGEMVGTVAAQSIGEPAT 1018
>gi|62911725|gb|AAY21493.1| RNA polymerase II [Meliponula erythra]
Length = 296
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/104 (97%), Positives = 103/104 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 193 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 252
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 106
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 253 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 296
>gi|194460424|gb|ACF71886.1| RNA polymerase II [Eufriesea tucumana]
Length = 268
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 101/105 (96%), Positives = 103/105 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 107
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG TPSEF
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGXTPSEF 267
>gi|320166366|gb|EFW43265.1| polymerase II polypeptide A [Capsaspora owczarzaki ATCC 30864]
Length = 1792
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 97/126 (76%), Positives = 111/126 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L++TFEN+VN+ LN+AR+ G + SL ++NN + M VAGSKGS +NISQVIACVGQQN
Sbjct: 750 LRETFENEVNKYLNNAREDAGKKVQDSLGDFNNFRLMAVAGSKGSVLNISQVIACVGQQN 809
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHF+KDDYGPESRGFVENSYL GLTPSEFFFHAMGGREG+IDTAV
Sbjct: 810 VEGKRIPFGFRFRTLPHFVKDDYGPESRGFVENSYLKGLTPSEFFFHAMGGREGVIDTAV 869
Query: 124 KTAETA 129
KT+ET
Sbjct: 870 KTSETG 875
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 80/91 (87%), Gaps = 2/91 (2%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
AK PGEMVGALAAQSLGEPATQMTLNTFHFAGVS+KNVTLGVPRL+E+IN+SK PK PS
Sbjct: 1097 AKVEPGEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLRELINVSKSPKTPS 1156
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTV+L Q+ D E+AK+V CRLEHTTL K+
Sbjct: 1157 LTVYL--QSGMDQERAKDVACRLEHTTLLKI 1185
>gi|62911691|gb|AAY21476.1| RNA polymerase II [Bembix dentilabris]
Length = 233
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 101/104 (97%), Positives = 103/104 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 130 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 189
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 106
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 190 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 233
>gi|71480590|gb|AAZ32220.1| RNA polymerase II large subunit [Lithurgus apicalis]
Length = 288
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 101/104 (97%), Positives = 103/104 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 185 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 244
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 106
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 245 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 288
>gi|62911719|gb|AAY21490.1| RNA polymerase II [Hypotrigona gribodoi]
Length = 258
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 101/104 (97%), Positives = 103/104 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 106
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 258
>gi|194460456|gb|ACF71902.1| RNA polymerase II [Euglossa dressleri]
Length = 267
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 101/105 (96%), Positives = 103/105 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 107
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEI 267
>gi|62911531|gb|AAY21396.1| RNA polymerase II [Bembix americana]
gi|62911559|gb|AAY21410.1| RNA polymerase II [Caupolicana vestita]
gi|62911571|gb|AAY21416.1| RNA polymerase II [Diphaglossa gayi]
gi|62911577|gb|AAY21419.1| RNA polymerase II [Euryglossina globuliceps]
gi|62911583|gb|AAY21422.1| RNA polymerase II [Hesperapis larreae]
gi|62911585|gb|AAY21423.1| RNA polymerase II [Hesperapis regularis]
gi|62911587|gb|AAY21424.1| RNA polymerase II [Hesperapis sp. Hesp940]
gi|62911591|gb|AAY21426.1| RNA polymerase II [Samba griseonigra]
gi|62911595|gb|AAY21428.1| RNA polymerase II [Hylaeus elegans]
gi|62911603|gb|AAY21432.1| RNA polymerase II [Leioproctus irroratus]
gi|62911639|gb|AAY21450.1| RNA polymerase II [Philanthus gibbosus]
gi|62911643|gb|AAY21452.1| RNA polymerase II [Pachymelus peringueyi]
gi|62911649|gb|AAY21455.1| RNA polymerase II [Paranomada velutina]
gi|62911663|gb|AAY21462.1| RNA polymerase II [Scrapter erubescens]
gi|62911669|gb|AAY21465.1| RNA polymerase II [Scrapter ruficornis]
gi|62911681|gb|AAY21471.1| RNA polymerase II [Triepeolus robustus]
gi|62911693|gb|AAY21477.1| RNA polymerase II [Zacosmia maculata]
gi|62911701|gb|AAY21481.1| RNA polymerase II [Colletes dimidiatus]
gi|62911703|gb|AAY21482.1| RNA polymerase II [Dasypoda visnaga]
gi|62911721|gb|AAY21491.1| RNA polymerase II [Leioproctus sp. Lesp707]
gi|62911745|gb|AAY21503.1| RNA polymerase II [Scrapter algoensis]
gi|62911751|gb|AAY21506.1| RNA polymerase II [Tetralonia cinctula]
Length = 258
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 101/104 (97%), Positives = 103/104 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 106
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 258
>gi|281203888|gb|EFA78084.1| RNA polymerase II largest subunit [Polysphondylium pallidum PN500]
Length = 2159
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 98/126 (77%), Positives = 112/126 (88%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
++ ++FE +VNR+LN ARD G SA++SL E NN+KAMV AGSKGS INISQ++ACVGQQ
Sbjct: 720 SMLESFEKEVNRVLNTARDDAGTSAQRSLQESNNVKAMVNAGSKGSFINISQMMACVGQQ 779
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKR+PFGF+ RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTA
Sbjct: 780 NVEGKRVPFGFQNRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 839
Query: 123 VKTAET 128
VKT+ET
Sbjct: 840 VKTSET 845
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 64/81 (79%), Positives = 74/81 (91%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIINI+K K PSLT++
Sbjct: 1081 PGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKTVKTPSLTIY 1140
Query: 196 LTGQAARDAEKAKNVLCRLEH 216
L AA+D+EKAK+V C+LE+
Sbjct: 1141 LQPDAAKDSEKAKSVQCQLEY 1161
>gi|33326205|gb|AAQ08512.1| RNA polymerase II largest subunit [Cycas revoluta]
Length = 1013
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 99/127 (77%), Positives = 111/127 (87%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQ
Sbjct: 649 TMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 708
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF R+LPHF +DDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTA
Sbjct: 709 NVEGKRIPFGFFGRSLPHFTRDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 768
Query: 123 VKTAETA 129
VKT+ET
Sbjct: 769 VKTSETG 775
>gi|62911709|gb|AAY21485.1| RNA polymerase II [Ericrocis lata]
gi|62911723|gb|AAY21492.1| RNA polymerase II [Macronomia sanguinolenta]
gi|62911747|gb|AAY21504.1| RNA polymerase II [Sphecodes sp. Spsp1055]
Length = 258
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 101/104 (97%), Positives = 103/104 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 106
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 258
>gi|33326209|gb|AAQ08514.1| RNA polymerase II largest subunit [Welwitschia mirabilis]
Length = 1013
Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 100/127 (78%), Positives = 110/127 (86%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+ ++FENQVN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQ
Sbjct: 649 TMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 708
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIP+GF RTLPHF KDD GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTA
Sbjct: 709 NVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 768
Query: 123 VKTAETA 129
VKT+ET
Sbjct: 769 VKTSETG 775
>gi|62911743|gb|AAY21502.1| RNA polymerase II [Rediviva saetigera]
Length = 258
Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 101/104 (97%), Positives = 103/104 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 106
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 258
>gi|62911735|gb|AAY21498.1| RNA polymerase II [Macrotera latior]
Length = 258
Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 101/104 (97%), Positives = 103/104 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 106
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 258
>gi|356538329|ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Glycine max]
Length = 1827
Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 100/125 (80%), Positives = 109/125 (87%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ +FEN+VN+ LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 728 MMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 787
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 788 VEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 847
Query: 124 KTAET 128
KT+ET
Sbjct: 848 KTSET 852
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 74/88 (84%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
A GEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K+ K PSL+V
Sbjct: 1078 ASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSV 1137
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+L + E+AK+V C LE+TTLR V
Sbjct: 1138 YLRSDVGKTKERAKSVQCALEYTTLRSV 1165
>gi|83320460|gb|ABC02857.1| RNA polymerase II largest subunit, partial [Paraglomus occultum]
Length = 847
Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 99/128 (77%), Positives = 113/128 (88%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFEN+VN+ LN ARD G SA+KSL EYNN+K MV++GSKGS INISQ+ ACVGQ
Sbjct: 479 MTIRKTFENKVNKELNTARDAAGRSAEKSLGEYNNVKQMVISGSKGSFINISQMSACVGQ 538
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ RTLPHF KDD+ PESRGFVENSYL GLTP+EFFFHAMGGREGLIDT
Sbjct: 539 QNVEGKRIPFGFKYRTLPHFTKDDHSPESRGFVENSYLRGLTPTEFFFHAMGGREGLIDT 598
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 599 AVKTAETG 606
>gi|62911553|gb|AAY21407.1| RNA polymerase II [Centris rhodopus]
Length = 296
Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 100/104 (96%), Positives = 103/104 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 193 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 252
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 106
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPS+
Sbjct: 253 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSD 296
>gi|83320420|gb|ABC02837.1| RNA polymerase II largest subunit, partial [Rozella allomycis]
Length = 809
Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 101/128 (78%), Positives = 110/128 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L++TFE++VN+ LN ARD G SA+ SL E NN+K MVVAGSKGS INISQ+ ACVGQ
Sbjct: 444 MTLRETFESKVNKSLNKARDSAGKSAQTSLKEQNNVKQMVVAGSKGSYINISQMTACVGQ 503
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGFR RTLPHF K DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 504 QNVEGKRIPFGFRYRTLPHFTKGDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 563
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 564 AVKTAETG 571
>gi|83320478|gb|ABC02866.1| RNA polymerase II largest subunit, partial [Neocallimastix sp.
GE13]
Length = 813
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/128 (78%), Positives = 110/128 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
L +++TFE+ VNR LN ARD G SA+KSL EYNN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 445 LTIRETFESLVNRHLNKARDSAGASAQKSLREYNNVKQMVVSGSKGSFINISQMTACVGQ 504
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ RTLPHF KDD PESRGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 505 QNVEGKRIPFGFKYRTLPHFTKDDQSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 564
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 565 AVKTAETG 572
>gi|188532139|gb|ACD63081.1| RNA polymerase II largest subunit [Asparagus officinalis]
Length = 1009
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/126 (78%), Positives = 111/126 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 646 MMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 705
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GF RTLPHF KDDYGPESRGFVENSYL GLTP EFFF+AMGGREGLIDTAV
Sbjct: 706 VEGKRIPYGFIGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFYAMGGREGLIDTAV 765
Query: 124 KTAETA 129
KT+ET
Sbjct: 766 KTSETG 771
>gi|120561241|gb|ABM27005.1| RNA polymerase II largest subunit, partial [Neocallimastix
frontalis]
Length = 1004
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/128 (78%), Positives = 110/128 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
L +++TFE+ VNR LN ARD G SA+KSL EYNN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 631 LTIRETFESLVNRHLNKARDSAGASAQKSLREYNNVKQMVVSGSKGSFINISQMTACVGQ 690
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ RTLPHF KDD PESRGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 691 QNVEGKRIPFGFKYRTLPHFTKDDQSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 750
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 751 AVKTAETG 758
>gi|45935327|gb|AAS79685.1| RNA polymerase II large subunit [Taxus canadensis]
Length = 1013
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/127 (77%), Positives = 110/127 (86%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQ
Sbjct: 649 TMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 708
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIP+GF RTLPHF KDD GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTA
Sbjct: 709 NVEGKRIPYGFDGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 768
Query: 123 VKTAETA 129
VKT+ET
Sbjct: 769 VKTSETG 775
>gi|290983563|ref|XP_002674498.1| RNA polymerase II [Naegleria gruberi]
gi|284088088|gb|EFC41754.1| RNA polymerase II [Naegleria gruberi]
Length = 1757
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 96/125 (76%), Positives = 110/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
++Q+FENQVN++LN AR+ G AKKSL + NN+K+MV AGSKGS INISQ+IACVGQQN
Sbjct: 697 IQQSFENQVNKVLNKAREDAGNKAKKSLKDDNNIKSMVTAGSKGSYINISQIIACVGQQN 756
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFR RTLPHF +DD+GPESRGFV NSYL GLTP EFFFH MGGREGLIDTAV
Sbjct: 757 VEGKRIPYGFRNRTLPHFAQDDHGPESRGFVANSYLRGLTPQEFFFHTMGGREGLIDTAV 816
Query: 124 KTAET 128
KT+ET
Sbjct: 817 KTSET 821
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/92 (66%), Positives = 72/92 (78%)
Query: 131 NAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAP 190
N PGEMVG++AAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKE++N++K K P
Sbjct: 1064 NCLAQPGEMVGSVAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKELLNVAKNIKTP 1123
Query: 191 SLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LT++L + D EKAK V LE+TTL V
Sbjct: 1124 GLTIYLNNEYIGDFEKAKMVKEDLEYTTLGHV 1155
>gi|62911755|gb|AAY21508.1| RNA polymerase II [Pseudopanurgus fraterculus]
Length = 296
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/104 (96%), Positives = 103/104 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 193 TLRQTFENRVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 252
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 106
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 253 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 296
>gi|21280517|gb|AAM45151.1|AF395110_1 RNA polymerase II largest subunit [Naegleria gruberi]
Length = 1590
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 96/125 (76%), Positives = 110/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
++Q+FENQVN++LN AR+ G AKKSL + NN+K+MV AGSKGS INISQ+IACVGQQN
Sbjct: 653 IQQSFENQVNKVLNKAREDAGNKAKKSLKDDNNIKSMVTAGSKGSYINISQIIACVGQQN 712
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFR RTLPHF +DD+GPESRGFV NSYL GLTP EFFFH MGGREGLIDTAV
Sbjct: 713 VEGKRIPYGFRNRTLPHFAQDDHGPESRGFVANSYLRGLTPQEFFFHTMGGREGLIDTAV 772
Query: 124 KTAET 128
KT+ET
Sbjct: 773 KTSET 777
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/92 (66%), Positives = 72/92 (78%)
Query: 131 NAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAP 190
N PGEMVG++AAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKE++N++K K P
Sbjct: 1021 NCLAQPGEMVGSVAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKELLNVAKNIKTP 1080
Query: 191 SLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LT++L + D EKAK V LE+TTL V
Sbjct: 1081 GLTIYLNNEYIGDFEKAKMVKEDLEYTTLGHV 1112
>gi|3172136|gb|AAC18417.1| RNA polymerase II largest subunit [Acanthamoeba castellanii]
Length = 1569
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/126 (78%), Positives = 109/126 (86%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FE +N+ILN ARD G SA+KSL NN KAMV+AGSKGS INISQV+ACVGQQN
Sbjct: 639 MMESFEFVINQILNKARDDAGNSAQKSLRRSNNFKAMVIAGSKGSAINISQVLACVGQQN 698
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPF FR RTLPHF+KDD+GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 699 VEGKRIPFCFRDRTLPHFVKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 758
Query: 124 KTAETA 129
KTAET
Sbjct: 759 KTAETG 764
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/89 (76%), Positives = 76/89 (85%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 193
C PGEM+GALAAQS+GEPATQMTLNTFHFAGVS+KNVTLGVPRLKE+INI+K K PSLT
Sbjct: 988 CDPGEMIGALAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINIAKTIKTPSLT 1047
Query: 194 VFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
V+L +RD E AKNV C L+HTTLR V
Sbjct: 1048 VYLEPHCSRDHEAAKNVQCSLQHTTLRDV 1076
>gi|62911637|gb|AAY21449.1| RNA polymerase II [Oxybelus abdominalis]
Length = 296
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/104 (96%), Positives = 102/104 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 193 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 252
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 106
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY AGLTPSE
Sbjct: 253 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYXAGLTPSE 296
>gi|33326207|gb|AAQ08513.1| RNA polymerase II largest subunit [Pinus nigra]
Length = 1013
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/126 (78%), Positives = 110/126 (87%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 650 MMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 709
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GF RTLPHF KDD GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 710 VEGKRIPYGFDGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 124 KTAETA 129
KT+ET
Sbjct: 770 KTSETG 775
>gi|45935325|gb|AAS79684.1| RNA polymerase II large subunit [Thuja occidentalis]
Length = 1013
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/126 (78%), Positives = 110/126 (87%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 650 MMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 709
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GF RTLPHF KDD GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 710 VEGKRIPYGFDGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 124 KTAETA 129
KT+ET
Sbjct: 770 KTSETG 775
>gi|45935329|gb|AAS79686.1| RNA polymerase II large subunit [Podocarpus macrophyllus]
Length = 1013
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/126 (78%), Positives = 110/126 (87%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 650 MMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 709
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GF RTLPHF KDD GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 710 VEGKRIPYGFDGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 124 KTAETA 129
KT+ET
Sbjct: 770 KTSETG 775
>gi|313218980|emb|CBY43254.1| unnamed protein product [Oikopleura dioica]
Length = 471
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/126 (77%), Positives = 111/126 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
++ TFEN VN+ILNDARDKTGG A+KSL+E+NN K MVVAGSKGS INISQVIA VGQQN
Sbjct: 267 IRNTFENHVNKILNDARDKTGGLAQKSLSEFNNFKQMVVAGSKGSKINISQVIAVVGQQN 326
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
V G+RIPF F R+LP F+KDD+ PES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTA+
Sbjct: 327 VSGQRIPFHFHHRSLPCFMKDDFSPESKGFVENSYLAGLTPTEFFFHAMGGREGLIDTAI 386
Query: 124 KTAETA 129
KTA T
Sbjct: 387 KTASTG 392
>gi|62911741|gb|AAY21501.1| RNA polymerase II [Pseudopanurgus fraterculus]
Length = 258
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/104 (96%), Positives = 103/104 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENRVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 106
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 258
>gi|34597090|gb|AAQ77120.1| RNA polymerase II largest subunit [Narceus americanus]
Length = 297
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/106 (91%), Positives = 103/106 (97%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSA+KSL+EYNN K+MVV+G+KGS INISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNDARDKTGGSAQKSLSEYNNFKSMVVSGAKGSKINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 108
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF
Sbjct: 252 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 297
>gi|120561221|gb|ABM26996.1| RNA polymerase II largest subunit, partial [Funneliformis mosseae]
Length = 1054
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/128 (76%), Positives = 112/128 (87%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FENQVN+ LN ARD G SA+KSL+E NN+K MV+AGSKGS INISQ+ ACVGQ
Sbjct: 665 MTIRESFENQVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGSKGSFINISQMTACVGQ 724
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIP+GF+ RTLPHF KDD+ PESRGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 725 QNVEGKRIPYGFKFRTLPHFTKDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 784
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 785 AVKTAETG 792
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/20 (80%), Positives = 19/20 (95%)
Query: 135 APGEMVGALAAQSLGEPATQ 154
+PGEMVG +AAQS+GEPATQ
Sbjct: 1035 SPGEMVGTVAAQSIGEPATQ 1054
>gi|33326203|gb|AAQ08511.1| RNA polymerase II largest subunit [Zamia muricata]
Length = 1013
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/126 (77%), Positives = 110/126 (87%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 650 MMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 709
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFG R+LPHF +DDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 710 VEGKRIPFGLFGRSLPHFTRDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 124 KTAETA 129
KT+ET
Sbjct: 770 KTSETG 775
>gi|259016096|gb|ACV89328.1| RNA polymerase II 215kD subunit [Mengenilla sp. BMW-2009]
Length = 291
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 100/102 (98%), Positives = 101/102 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ
Sbjct: 190 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 249
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 104
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP
Sbjct: 250 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 291
>gi|77176709|gb|ABA64469.1| DNA-dependent RNA polymerase II largest subunit [Glaucocystis
nostochinearum]
Length = 1852
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 110/126 (87%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L ++FEN+VN+ LN ARD G SA+KSL NN+KAMV +GSKGS INISQ+IACVGQQN
Sbjct: 720 LLESFENRVNKELNTARDNAGASAQKSLKPSNNVKAMVTSGSKGSFINISQMIACVGQQN 779
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHF K+DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 780 VEGKRIPFGFRDRTLPHFHKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 839
Query: 124 KTAETA 129
KT+ET
Sbjct: 840 KTSETG 845
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 75/87 (86%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGA+AAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN++KK K PSL V+
Sbjct: 1070 PGEMVGAIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAKKVKTPSLVVY 1129
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L RD+EKAK V C+LE TTLR V
Sbjct: 1130 LKEYCRRDSEKAKAVQCQLEFTTLRHV 1156
>gi|83320422|gb|ABC02838.1| RNA polymerase II largest subunit, partial [Batrachochytrium
dendrobatidis]
Length = 985
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 98/128 (76%), Positives = 111/128 (86%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++Q+FE+ VN+ LN ARD G SA+KSL EYNN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 626 MTIRQSFESLVNQELNRARDNAGKSAEKSLKEYNNVKQMVVSGSKGSFINISQMTACVGQ 685
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ RTLPHF +DD+ PESRGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 686 QNVEGKRIPFGFKDRTLPHFTRDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 745
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 746 AVKTAETG 753
>gi|62911597|gb|AAY21429.1| RNA polymerase II [Hylaeus proximus]
Length = 258
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 100/104 (96%), Positives = 102/104 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QT ENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTXENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 106
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 258
>gi|188532159|gb|ACD63091.1| RNA polymerase II largest subunit [Saruma henryi]
Length = 1009
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 98/125 (78%), Positives = 110/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 646 MMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 705
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GF RTLPHF +DD GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 706 VEGKRIPYGFINRTLPHFTQDDNGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 765
Query: 124 KTAET 128
KT+ET
Sbjct: 766 KTSET 770
>gi|45935331|gb|AAS79687.1| RNA polymerase II large subunit [Ginkgo biloba]
Length = 1013
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 98/126 (77%), Positives = 110/126 (87%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA++SL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 650 MMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 709
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GF RTLPHF KDD GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 710 VEGKRIPYGFDGRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 124 KTAETA 129
KT+ET
Sbjct: 770 KTSETG 775
>gi|328772047|gb|EGF82086.1| hypothetical protein BATDEDRAFT_86817 [Batrachochytrium
dendrobatidis JAM81]
Length = 1797
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 98/128 (76%), Positives = 111/128 (86%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++Q+FE+ VN+ LN ARD G SA+KSL EYNN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 723 MTIRQSFESLVNQELNRARDNAGKSAEKSLKEYNNVKQMVVSGSKGSFINISQMTACVGQ 782
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ RTLPHF +DD+ PESRGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 783 QNVEGKRIPFGFKDRTLPHFTRDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 842
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 843 AVKTAETG 850
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 71/91 (78%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVG +AAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN++K K P
Sbjct: 1075 AIVHPGEMVGTIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAKNIKTPR 1134
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
L ++L + R E AK + +EHTTLRK+
Sbjct: 1135 LEIYLDPEYRRSMEMAKKIHSTIEHTTLRKL 1165
>gi|120561227|gb|ABM26999.1| RNA polymerase II largest subunit, partial [Catenaria anguillulae]
Length = 1020
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 98/128 (76%), Positives = 110/128 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L++TFE VNR LN+A +K GG+A KS +NN+K MVVAGSKGSNINISQ+ ACVGQ
Sbjct: 648 MTLRETFEANVNRTLNEAVNKAGGAAAKSFKVHNNVKHMVVAGSKGSNINISQMSACVGQ 707
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ R+LPHF+KDDY PESRGFVENSYL GL P EFFFHAMGGREGLIDT
Sbjct: 708 QNVEGKRIPFGFQYRSLPHFVKDDYSPESRGFVENSYLRGLNPQEFFFHAMGGREGLIDT 767
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 768 AVKTAETG 775
>gi|145351142|ref|XP_001419944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580177|gb|ABO98237.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1646
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 96/127 (75%), Positives = 111/127 (87%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++Q+FE +VN+ILN ARD G SA+ SL + NN+K MV AGSKGS +NISQ+IACVGQ
Sbjct: 702 MTMQQSFEQKVNQILNKARDNAGNSAQNSLMDTNNVKMMVTAGSKGSFLNISQMIACVGQ 761
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIP+GF+ RTLPHF KDD+GPESRGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 762 QNVEGKRIPYGFKGRTLPHFSKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 821
Query: 122 AVKTAET 128
AVKT+ET
Sbjct: 822 AVKTSET 828
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 70/91 (76%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PG+ +G +AAQS+GEPATQMTLNTFHFAGVS+KNVTLGVPRLKEIINI+K K PS
Sbjct: 1052 ALAPPGDGIGTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKSIKTPS 1111
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LT+ L + A D +AK+ LE+TTL V
Sbjct: 1112 LTIALKPELAGDRTRAKDCQASLEYTTLHSV 1142
>gi|297603848|ref|NP_001054670.2| Os05g0151000 [Oryza sativa Japonica Group]
gi|222630225|gb|EEE62357.1| hypothetical protein OsJ_17146 [Oryza sativa Japonica Group]
gi|255676030|dbj|BAF16584.2| Os05g0151000 [Oryza sativa Japonica Group]
Length = 1834
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 98/123 (79%), Positives = 108/123 (87%)
Query: 6 QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVE 65
++FEN+VN +LN ARD G SA+KSL+E NNLKAM AGSKG+ INISQ+ ACVGQQNVE
Sbjct: 731 ESFENRVNEVLNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINISQMTACVGQQNVE 790
Query: 66 GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 125
GKRIPFGF RTLPHF K+DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT
Sbjct: 791 GKRIPFGFTNRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 850
Query: 126 AET 128
+ET
Sbjct: 851 SET 853
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 74/90 (82%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K K PSL+V
Sbjct: 1079 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSV 1138
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKVLY 224
L + + E AKNV C LE+TTLR V +
Sbjct: 1139 HLKPEVNKKKELAKNVQCALEYTTLRSVTH 1168
>gi|356496595|ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Glycine max]
Length = 1827
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 99/126 (78%), Positives = 109/126 (86%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
++ +FEN+VN+ LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQ
Sbjct: 727 SMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 786
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIP+GF RTLPHF KDD GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTA
Sbjct: 787 NVEGKRIPYGFIDRTLPHFTKDDLGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 846
Query: 123 VKTAET 128
VKT+ET
Sbjct: 847 VKTSET 852
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 74/88 (84%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
A GEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K+ K PSL+V
Sbjct: 1078 ASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSV 1137
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+L + E+AK+V C LE+TTLR V
Sbjct: 1138 YLRPDVGKTKERAKSVQCALEYTTLRSV 1165
>gi|309755546|gb|ADO86607.1| RNA polymerase II [Agmina parie]
Length = 246
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/102 (97%), Positives = 101/102 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 104
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP
Sbjct: 205 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 246
>gi|54291834|gb|AAV32202.1| putative RNA polymerase II [Oryza sativa Japonica Group]
Length = 1741
Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 98/123 (79%), Positives = 108/123 (87%)
Query: 6 QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVE 65
++FEN+VN +LN ARD G SA+KSL+E NNLKAM AGSKG+ INISQ+ ACVGQQNVE
Sbjct: 678 ESFENRVNEVLNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINISQMTACVGQQNVE 737
Query: 66 GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 125
GKRIPFGF RTLPHF K+DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT
Sbjct: 738 GKRIPFGFTNRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 797
Query: 126 AET 128
+ET
Sbjct: 798 SET 800
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 74/90 (82%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K K PSL+V
Sbjct: 1026 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSV 1085
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKVLY 224
L + + E AKNV C LE+TTLR V +
Sbjct: 1086 HLKPEVNKKKELAKNVQCALEYTTLRSVTH 1115
>gi|158427009|gb|ABW38112.1| RNA polymerase II [Euglossa imperialis]
gi|158427011|gb|ABW38113.1| RNA polymerase II [Exaerete frontalis]
gi|158427013|gb|ABW38114.1| RNA polymerase II [Eufriesea pulchra]
gi|158427029|gb|ABW38122.1| RNA polymerase II [Apis florea]
gi|158427031|gb|ABW38123.1| RNA polymerase II [Apis dorsata]
gi|158427033|gb|ABW38124.1| RNA polymerase II [Apis cerana]
Length = 282
Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/102 (97%), Positives = 101/102 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 181 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 240
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 104
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP
Sbjct: 241 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 282
>gi|308808522|ref|XP_003081571.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
gi|116060036|emb|CAL56095.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
Length = 1673
Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 96/128 (75%), Positives = 111/128 (86%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++Q+FE +VN+ILN ARD G SA+ SL + NN+K MV AGSKGS +NISQ+IACVGQ
Sbjct: 722 MTMQQSFEQKVNQILNKARDNAGNSAQNSLKDTNNVKMMVTAGSKGSFLNISQMIACVGQ 781
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIP+GF+ RTLPHF KDD+GPESRGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 782 QNVEGKRIPYGFKGRTLPHFSKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 841
Query: 122 AVKTAETA 129
AVKT+ET
Sbjct: 842 AVKTSETG 849
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/103 (62%), Positives = 75/103 (72%), Gaps = 3/103 (2%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PG+ +G +AAQS+GEPATQMTLNTFHFAGVS+KNVTLGVPRLKEIINI+K+ K PS
Sbjct: 1072 ALAPPGDGIGVVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKQIKTPS 1131
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVLYIILRPATHYQ 234
LTV L + A D KAK+V LE+TTL V + HY
Sbjct: 1132 LTVALKPEFASDRTKAKDVQASLEYTTLHSVAAVT---EVHYD 1171
>gi|194460446|gb|ACF71897.1| RNA polymerase II [Euglossa deceptrix]
Length = 264
Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/102 (97%), Positives = 101/102 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 104
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 264
>gi|259016126|gb|ACV89343.1| RNA polymerase II 215kD subunit [Boreus brumalis]
Length = 289
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 99/102 (97%), Positives = 101/102 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 188 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 247
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 104
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP
Sbjct: 248 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 289
>gi|158427021|gb|ABW38118.1| RNA polymerase II [Trigona fuscipennis]
gi|158427023|gb|ABW38119.1| RNA polymerase II [Cephalotrigona capitata]
gi|158427025|gb|ABW38120.1| RNA polymerase II [Meliponula bocandei]
gi|158427027|gb|ABW38121.1| RNA polymerase II [Scaura latitarsis]
Length = 282
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 99/102 (97%), Positives = 101/102 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 181 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 240
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 104
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP
Sbjct: 241 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 282
>gi|158427015|gb|ABW38115.1| RNA polymerase II [Bombus ardens]
gi|158427017|gb|ABW38116.1| RNA polymerase II [Bombus diversus]
gi|158427019|gb|ABW38117.1| RNA polymerase II [Bombus mendax]
Length = 282
Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 99/102 (97%), Positives = 101/102 (99%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 181 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 240
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 104
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP
Sbjct: 241 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 282
>gi|12642616|gb|AAK00312.1|AF315822_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monoblepharis
macrandra]
Length = 1603
Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 96/128 (75%), Positives = 111/128 (86%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++VN++LN ARD G A+KSL YNN+K MV+AGSKGS INISQ+ ACVGQ
Sbjct: 648 MTVRETFESKVNKVLNKARDDAGKKAEKSLKIYNNVKQMVIAGSKGSFINISQMTACVGQ 707
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIP+GFR RTLPHF KDD+ PESRGFVENSYL GL+P EFFFHAMGGREGLIDT
Sbjct: 708 QNVEGKRIPYGFRYRTLPHFTKDDHSPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDT 767
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 768 AVKTAETG 775
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 68/94 (72%), Gaps = 3/94 (3%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
AK P EMVG +AAQS+GEPATQMTLNTFHFAGV SKNVTLGVPRLKEIIN++ + PS
Sbjct: 1002 AKVNPAEMVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKEIINVATNLRTPS 1061
Query: 192 LTVFLTGQA---ARDAEKAKNVLCRLEHTTLRKV 222
L V L D +AK + ++E+TTL K+
Sbjct: 1062 LLVCLKANKDGRPLDLPQAKKIQAKIEYTTLGKL 1095
>gi|316997001|dbj|BAJ52628.1| RNA polymerase II largest subunit [Stephanoeca diplocostata]
Length = 999
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 96/126 (76%), Positives = 109/126 (86%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
++QTFENQVNR+LN AR TG SA+ SL+EYNN K M +GSKG +NISQVIACVGQQN
Sbjct: 232 IRQTFENQVNRVLNKARSDTGQSAETSLSEYNNFKCMSRSGSKGGTLNISQVIACVGQQN 291
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRI FGF+ R+LPH+IKDDYGP+S+GFV NSYL GLTP+E FFHAMGGREGLIDTAV
Sbjct: 292 VEGKRIKFGFQYRSLPHYIKDDYGPDSKGFVFNSYLRGLTPTELFFHAMGGREGLIDTAV 351
Query: 124 KTAETA 129
KTAET
Sbjct: 352 KTAETG 357
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/92 (71%), Positives = 76/92 (82%), Gaps = 1/92 (1%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVS+KNVTLGVPRLKEIIN+SK+PK PS
Sbjct: 577 AQSNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQPKTPS 636
Query: 192 LTVFLTGQ-AARDAEKAKNVLCRLEHTTLRKV 222
LTV L + A+ + K V LEHTTL+++
Sbjct: 637 LTVKLEPEYASTENTKYVEVFNALEHTTLKQI 668
>gi|188532145|gb|ACD63084.1| RNA polymerase II largest subunit [Drimys winteri]
Length = 1010
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 98/126 (77%), Positives = 109/126 (86%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN++LN ARD G SA+ SL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 647 MTESFENRVNQVLNKARDDAGSSAQNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 706
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GF RTLPHF KDD GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 707 VEGKRIPYGFIGRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 766
Query: 124 KTAETA 129
KT+ET
Sbjct: 767 KTSETG 772
>gi|303272485|ref|XP_003055604.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463578|gb|EEH60856.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1694
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 96/127 (75%), Positives = 109/127 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++Q+FE +VN+ILN ARD G SA+ SL + NN+K V AGSKGS +NISQ+IACVGQ
Sbjct: 706 MTMQQSFEQKVNQILNKARDNAGNSAQGSLDDTNNVKMTVTAGSKGSFLNISQMIACVGQ 765
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF R+LPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 766 QNVEGKRIPFGFDGRSLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 825
Query: 122 AVKTAET 128
AVKT+ET
Sbjct: 826 AVKTSET 832
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/91 (69%), Positives = 70/91 (76%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PG+ +G +AAQS+GEPATQMTLNTFHFAGVS+KNVTLGVPRLKEIINI+KK K PS
Sbjct: 1060 ALAPPGDGIGTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKKIKTPS 1119
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTV L A D AKNV LE+TTL V
Sbjct: 1120 LTVALRKDLAGDRAMAKNVQASLEYTTLHSV 1150
>gi|38232405|gb|AAR15038.1| RNA polymerase II largest subunit [Echiniscus viridissimus]
Length = 222
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 96/105 (91%), Positives = 103/105 (98%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTGGSA++SL+E+NN KAMVV+G+KGS INISQVIACVGQQN
Sbjct: 118 LRQTFENQVNRILNDARDKTGGSAQRSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQN 177
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 108
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF
Sbjct: 178 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 222
>gi|242071129|ref|XP_002450841.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
gi|241936684|gb|EES09829.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
Length = 1874
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 96/125 (76%), Positives = 107/125 (85%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FEN+VN LN ARD G + + +L+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 728 MMESFENKVNEALNKARDNVGSNVQNNLSESNNLKAMVSAGSKGSFINISQMAACVGQQN 787
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
+EGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 788 IEGKRIPFGFSDRTLPHFTKDDYGPESRGFVENSYLQGLTPQEFFFHAMGGREGLIDTAV 847
Query: 124 KTAET 128
KT+ET
Sbjct: 848 KTSET 852
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 75/90 (83%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
AP EM+G +AAQS+GEPATQMTLNTFHFAGVS+KNVTLGVPRL+EIIN++KK K PSL+V
Sbjct: 1078 APSEMIGCVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1137
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKVLY 224
+L + + E AK+V C LE+TTLR V +
Sbjct: 1138 YLKPEVNKTKELAKSVQCALEYTTLRSVTH 1167
>gi|194460383|gb|ACF71866.1| RNA polymerase II [Euglossa cognata]
Length = 263
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 98/102 (96%), Positives = 100/102 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 162 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 221
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 104
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG TP
Sbjct: 222 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGXTP 263
>gi|120561225|gb|ABM26998.1| RNA polymerase II largest subunit, partial [Allomyces macrogynus]
Length = 1008
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/128 (75%), Positives = 110/128 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L++TFE QVNR LN+A +K G +A KS NN+K MVV+GSKGSNINISQ+ ACVGQ
Sbjct: 636 MTLRETFEAQVNRALNEAVNKAGSAAAKSFKVSNNVKQMVVSGSKGSNINISQMSACVGQ 695
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ R+LPHF+KDDY PESRGFVENSYL GL+P EFFFHAMGGREGLIDT
Sbjct: 696 QNVEGKRIPFGFQYRSLPHFVKDDYSPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDT 755
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 756 AVKTAETG 763
>gi|77176711|gb|ABA64470.1| DNA-dependent RNA polymerase II largest subunit [Cyanophora
paradoxa]
Length = 1000
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 96/123 (78%), Positives = 107/123 (86%)
Query: 6 QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVE 65
++FE++VNRILN ARD G +A+ SL NN+K M+ +GSKGS INISQ+ ACVGQQNVE
Sbjct: 632 ESFESKVNRILNQARDAAGKTAQGSLQRSNNVKTMLTSGSKGSFINISQMFACVGQQNVE 691
Query: 66 GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 125
GKRIPFGFR RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT
Sbjct: 692 GKRIPFGFRNRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 751
Query: 126 AET 128
+ET
Sbjct: 752 SET 754
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/20 (90%), Positives = 20/20 (100%)
Query: 136 PGEMVGALAAQSLGEPATQM 155
PGEMVGA+AAQS+GEPATQM
Sbjct: 981 PGEMVGAIAAQSIGEPATQM 1000
>gi|78190699|gb|ABB29671.1| DNA-directed RNA polymerase II largest subunit [Leucosolenia sp.
AR-2003]
Length = 363
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 96/106 (90%), Positives = 102/106 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSA+KSL+E+NN KAMVVAGSKGS INISQVIACVGQQ
Sbjct: 258 TLRQTFENQVNRILNDARDKTGGSAQKSLSEFNNFKAMVVAGSKGSKINISQVIACVGQQ 317
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 108
NVEGKRIPFGFR RTLPHFIKDDYGPESRGFV+NSYLAGLTP+EFF
Sbjct: 318 NVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVQNSYLAGLTPNEFF 363
>gi|321468694|gb|EFX79678.1| hypothetical protein DAPPUDRAFT_304478 [Daphnia pulex]
Length = 1441
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 102/126 (80%), Positives = 111/126 (88%), Gaps = 6/126 (4%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QT ENQVNRIL DAR++TGGSAK SLTE+NNLKAMVVAGS GSN+NISQVIACVGQQN
Sbjct: 694 LRQTLENQVNRILIDARNETGGSAKNSLTEFNNLKAMVVAGSSGSNVNISQVIACVGQQN 753
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFRKRTLPHFIKDD+GPESRGF +GLTPSEF+FHAM R+ LIDTAV
Sbjct: 754 VEGKRIPFGFRKRTLPHFIKDDFGPESRGFG-----SGLTPSEFYFHAM-DRKALIDTAV 807
Query: 124 KTAETA 129
KTA T
Sbjct: 808 KTANTG 813
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 77/91 (84%), Positives = 84/91 (92%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPAT+MT+NTFHFAGVSSKNVTLGV RLKEIINISK PK+PS
Sbjct: 1034 AQAQPGEMVGALAAQSLGEPATKMTVNTFHFAGVSSKNVTLGVARLKEIINISKSPKSPS 1093
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+TVFL G+AA DAEKA+ VLCRLEHTTLRKV
Sbjct: 1094 MTVFLRGEAATDAEKAREVLCRLEHTTLRKV 1124
>gi|116874718|emb|CAJ75797.1| RNA polymerase I subunit B [Geosiphon pyriformis]
Length = 649
Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 97/128 (75%), Positives = 111/128 (86%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE+ VNR LN ARD G SA++SL E NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 484 MTIRESFEHHVNRELNTARDSAGRSAERSLREENNVKQMVVSGSKGSFINISQMSACVGQ 543
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ RTLPHF KDD+ PESRGFVENSYL GLTP+EFFFHAMGGREGLIDT
Sbjct: 544 QNVEGKRIPFGFKFRTLPHFTKDDHSPESRGFVENSYLRGLTPTEFFFHAMGGREGLIDT 603
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 604 AVKTAETG 611
>gi|83320428|gb|ABC02841.1| RNA polymerase II largest subunit, partial [Spizellomyces
punctatus]
Length = 792
Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 97/128 (75%), Positives = 110/128 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE+ VN+ LN ARD G SA+ SL EYNN+K MVVAGSKGS INISQ+ ACVGQ
Sbjct: 643 MTIRESFESLVNKELNRARDNAGKSAQASLKEYNNVKQMVVAGSKGSYINISQMSACVGQ 702
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ R+LPHF KDD+ PESRGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 703 QNVEGKRIPFGFKYRSLPHFTKDDHTPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 762
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 763 AVKTAETG 770
>gi|397568287|gb|EJK46059.1| hypothetical protein THAOC_35301 [Thalassiosira oceanica]
Length = 1754
Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 96/123 (78%), Positives = 107/123 (86%)
Query: 6 QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVE 65
++FE VNR+LN ARD G SA+ SL+E N++KAMV AGSKGS INISQ+IACVGQQNVE
Sbjct: 726 ESFEQLVNRVLNTARDHAGKSAQSSLSETNSVKAMVTAGSKGSFINISQIIACVGQQNVE 785
Query: 66 GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 125
G RIP+GF++RTLPHF KDD GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTA KT
Sbjct: 786 GNRIPYGFKRRTLPHFQKDDLGPESRGFVENSYLFGLTPQEFFFHAMGGREGLIDTACKT 845
Query: 126 AET 128
AET
Sbjct: 846 AET 848
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/92 (65%), Positives = 72/92 (78%)
Query: 131 NAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAP 190
+AK +PGEM G LAAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN++K K P
Sbjct: 1080 HAKVSPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTVKTP 1139
Query: 191 SLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LT+ L Q + DA+ AK V +E+T L V
Sbjct: 1140 GLTIHLKPQVSGDADIAKMVHSSIEYTVLGDV 1171
>gi|83320456|gb|ABC02855.1| RNA polymerase II largest subunit, partial [Boothiomyces
macroporosum]
Length = 999
Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 97/128 (75%), Positives = 109/128 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ +FE+ VN LN ARD G SA+KSL E+NN+K MVVAGSKGS +NISQ+ ACVGQ
Sbjct: 632 MTIRGSFESLVNMELNRARDNAGKSAQKSLKEFNNVKQMVVAGSKGSFLNISQMTACVGQ 691
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ RTLPHF KDD+ PESRGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 692 QNVEGKRIPFGFKDRTLPHFTKDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 751
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 752 AVKTAETG 759
>gi|83320466|gb|ABC02860.1| RNA polymerase II largest subunit, partial [Synchytrium
macrosporum]
Length = 808
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 111/128 (86%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++Q+FE +VN LN+ARDK G +A+ SL +NN+K MVVAGSKGS INISQ+ ACVGQ
Sbjct: 643 MTIRQSFEAKVNHELNNARDKAGKAAQDSLPSFNNVKQMVVAGSKGSYINISQMTACVGQ 702
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEG+RIP+GF+ RTLPHF+KDD+ PE+RGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 703 QNVEGRRIPYGFQYRTLPHFVKDDHSPEARGFVENSYLRGLTPQEFFFHAMGGREGLIDT 762
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 763 AVKTAETG 770
>gi|62911711|gb|AAY21486.1| RNA polymerase II [Euryglossa ephippiata]
Length = 258
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 97/102 (95%), Positives = 99/102 (97%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 104
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL LTP
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLCWLTP 256
>gi|83320446|gb|ABC02850.1| RNA polymerase II largest subunit, partial [Mortierella
verticillata]
Length = 1016
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 96/128 (75%), Positives = 109/128 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L++TFE+ VNR LN ARD G A++SL E NN+K MV++GSKGS IN+SQ+ ACVGQ
Sbjct: 640 MTLRETFESLVNRALNTARDDAGKMAQQSLREDNNVKQMVISGSKGSFINVSQMTACVGQ 699
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ RTLPHF KDD+ PESRGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 700 QNVEGKRIPFGFKYRTLPHFTKDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 759
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 760 AVKTAETG 767
>gi|120561223|gb|ABM26997.1| RNA polymerase II largest subunit, partial [Gigaspora gigantea]
Length = 1039
Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 96/128 (75%), Positives = 110/128 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++VN+ LN ARD G SA++SL E NN+K MV+AGSKGS INISQ+ ACVGQ
Sbjct: 659 MTIRETFEHKVNKELNTARDAAGKSAEQSLKEENNVKQMVIAGSKGSFINISQMTACVGQ 718
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ RTLPHF KDD+ PESRGFVEN YL GLTP EFFFHAMGGREGLIDT
Sbjct: 719 QNVEGKRIPFGFKFRTLPHFTKDDHSPESRGFVENCYLRGLTPQEFFFHAMGGREGLIDT 778
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 779 AVKTAETG 786
>gi|3172134|gb|AAC18416.1| RNA polymerase II largest subunit [Bonnemaisonia hamifera]
Length = 1732
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 110/127 (86%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+ ++FE +VN++LN ARDK+G SA++SL + NN+K MV AGSKGS INISQ+ ACVGQQ
Sbjct: 621 GMMESFETEVNKVLNGARDKSGASAQRSLLKSNNIKRMVSAGSKGSFINISQICACVGQQ 680
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRI +GF +RTLPHF+ DD GPESRGFVENSYL GLTPSEFFFHAMGGREGLIDTA
Sbjct: 681 NVEGKRIAYGFHRRTLPHFVLDDLGPESRGFVENSYLRGLTPSEFFFHAMGGREGLIDTA 740
Query: 123 VKTAETA 129
VKTAET
Sbjct: 741 VKTAETG 747
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 74/90 (82%)
Query: 133 KCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSL 192
+ APGE +GA+AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK K PSL
Sbjct: 1005 RVAPGENIGAIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKNTKTPSL 1064
Query: 193 TVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
TV+L Q A D EKAK + L+HTTL V
Sbjct: 1065 TVYLKSQYAGDKEKAKEIQASLQHTTLHDV 1094
>gi|262303425|gb|ACY44305.1| RNA polymerase largest subunit [Achelia echinata]
Length = 654
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 94/106 (88%), Positives = 102/106 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFEN+VNRILNDARDKTG SA+KSL+E+NN KAMVV+GSKGS INISQVIACVGQQ
Sbjct: 192 TLRQTFENKVNRILNDARDKTGSSAQKSLSEFNNFKAMVVSGSKGSKINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 108
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL+GLTP+EFF
Sbjct: 252 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLSGLTPAEFF 297
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/60 (91%), Positives = 58/60 (96%)
Query: 163 AGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
AGVS+KNVTLGVPRLKEIIN+SKKPK PSLTVFLTG AARDAEKAK+VLCRLEHTTLRKV
Sbjct: 516 AGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLTGAAARDAEKAKDVLCRLEHTTLRKV 575
>gi|78190535|gb|ABB29589.1| DNA-directed RNA polymerase II largest subunit [Platynereis
dumerilii]
Length = 363
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/105 (90%), Positives = 101/105 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVN ILNDARDKTGGSA+KSL+E+NN K+MVVAGSKGS INISQVIACVGQQN
Sbjct: 259 LRQTFENQVNMILNDARDKTGGSAQKSLSEFNNFKSMVVAGSKGSKINISQVIACVGQQN 318
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 108
VEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFF
Sbjct: 319 VEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFF 363
>gi|160331837|ref|XP_001712625.1| rpb1 [Hemiselmis andersenii]
gi|159766074|gb|ABW98300.1| rpb1 [Hemiselmis andersenii]
Length = 1464
Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats.
Identities = 92/126 (73%), Positives = 108/126 (85%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
LK FEN +N+ILN ARDK G +A+KSL+ NN+K MV GSKGS INISQ+IACVGQQN
Sbjct: 701 LKDDFENHINKILNSARDKAGSNAQKSLSNANNIKRMVDCGSKGSFINISQIIACVGQQN 760
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP GF KR+LPHF KD+YGPE+RGFV+NSY++GL P EFFFH+MGGREGLIDTA+
Sbjct: 761 VEGKRIPMGFNKRSLPHFSKDNYGPETRGFVQNSYISGLRPDEFFFHSMGGREGLIDTAI 820
Query: 124 KTAETA 129
KT+ET
Sbjct: 821 KTSETG 826
Score = 110 bits (274), Expect = 7e-22, Method: Composition-based stats.
Identities = 51/89 (57%), Positives = 67/89 (75%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
+PGEMVG ++AQS+G+PATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+ + K PSLT+
Sbjct: 1060 SPGEMVGTISAQSIGQPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVLQTVKTPSLTI 1119
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKVL 223
+ + + K K LE TL+ ++
Sbjct: 1120 YFRKEFSSSLSKIKQFQQTLEFITLKSMI 1148
>gi|71082699|gb|AAZ23553.1| DNA-dependent RNA polymerase II largest subunit [Nosema sp. PX1]
Length = 442
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 111/127 (87%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+QVN +LN ARD +G S +KSL E NN+KAMV++GSKGS INISQV ACVGQ
Sbjct: 80 MTMKESFESQVNYVLNKARDVSGTSTQKSLNECNNMKAMVLSGSKGSFINISQVTACVGQ 139
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF RTLPHF K+DY +SRGFVENSYL+GL+P EFFFHAMGGREGLIDT
Sbjct: 140 QNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGGREGLIDT 199
Query: 122 AVKTAET 128
A+KTAET
Sbjct: 200 AIKTAET 206
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 127 ETACNAKCAPGEMVGALAAQSLGEPATQMTLNTF 160
+ +++ A EMVG LAAQS+GEPATQMTLNTF
Sbjct: 409 DKVMSSRVAHNEMVGTLAAQSVGEPATQMTLNTF 442
>gi|83320464|gb|ABC02859.1| RNA polymerase II largest subunit, partial [Scutellospora
heterogama]
Length = 639
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/128 (75%), Positives = 110/128 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++VN+ LN ARD G SA++SL E NN+K MV+AGSKGS INISQ+ ACVGQ
Sbjct: 480 MTIRETFEHRVNKELNTARDAAGKSAEQSLKEENNVKQMVIAGSKGSFINISQMTACVGQ 539
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ RTLPHF KDD+ PESRGFVEN YL GLTP EFFFHAMGGREGLIDT
Sbjct: 540 QNVEGKRIPFGFKFRTLPHFTKDDHSPESRGFVENCYLRGLTPQEFFFHAMGGREGLIDT 599
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 600 AVKTAETG 607
>gi|38232445|gb|AAR15058.1| RNA polymerase II largest subunit [Thulinius stephaniae]
Length = 297
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/105 (91%), Positives = 99/105 (94%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+ YNN KAMVVAGSKGS INISQVIACVGQQN
Sbjct: 193 LRQTFENQVNRILNDARDKTGSSAQKSLSAYNNFKAMVVAGSKGSKINISQVIACVGQQN 252
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 108
VEGKRIPFGFR RTLPHFI DDYGPESRGFVENSYLAGLTPSEFF
Sbjct: 253 VEGKRIPFGFRHRTLPHFITDDYGPESRGFVENSYLAGLTPSEFF 297
>gi|83320426|gb|ABC02840.1| RNA polymerase II largest subunit, partial [Hyaloraphidium
curvatum]
Length = 1002
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/128 (75%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE+ VN+ILN AR+ G +A KSL +NN K MV AGSKGS INISQ+ ACVGQ
Sbjct: 636 MTIRETFESVVNKILNKAREDAGKAATKSLAPFNNAKQMVDAGSKGSEINISQMAACVGQ 695
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGFR RTLPHF KDD PESRGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 696 QNVEGKRIPFGFRLRTLPHFTKDDQSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 755
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 756 AVKTAETG 763
>gi|223992753|ref|XP_002286060.1| DNA directed RNA polymerase II, largest subunit [Thalassiosira
pseudonana CCMP1335]
gi|220977375|gb|EED95701.1| DNA directed RNA polymerase II, largest subunit [Thalassiosira
pseudonana CCMP1335]
Length = 1627
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 107/123 (86%)
Query: 6 QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVE 65
++FE VN++LN ARD G SA+ SL E N++KAMV AGSKGS INISQ+IACVGQQNVE
Sbjct: 720 ESFEQFVNKVLNTARDHAGKSAQASLDETNSVKAMVTAGSKGSFINISQIIACVGQQNVE 779
Query: 66 GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 125
G RIP+GF++RTLPHF KDD GPESRGFVENSYL+GLTP EFFFHAMGGREGLIDTA KT
Sbjct: 780 GNRIPYGFKRRTLPHFSKDDLGPESRGFVENSYLSGLTPQEFFFHAMGGREGLIDTACKT 839
Query: 126 AET 128
AET
Sbjct: 840 AET 842
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 71/89 (79%)
Query: 131 NAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAP 190
+AK +PGEM G LAAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN++K K P
Sbjct: 1074 HAKVSPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTVKTP 1133
Query: 191 SLTVFLTGQAARDAEKAKNVLCRLEHTTL 219
LT++L + DA+ AK V +E+T L
Sbjct: 1134 GLTIYLQNHVSGDADVAKLVHSMIEYTVL 1162
>gi|409193803|gb|AFV31135.1| RNA polymerase II largest subunit [Amoeboaphelidium protococcarum]
Length = 1767
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/127 (75%), Positives = 110/127 (86%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE++VN+ LN ARD G SA+KSL + NN+K MVVAGSKGS INISQ+ ACVGQ
Sbjct: 718 MTIQESFESRVNQELNRARDIAGASAQKSLNDANNVKQMVVAGSKGSFINISQMTACVGQ 777
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEG+RIPFGF+ RTLPHF KDD PESRGFVENSYL GLTPSE FFHAMGGREGLIDT
Sbjct: 778 QNVEGRRIPFGFKYRTLPHFTKDDQSPESRGFVENSYLRGLTPSELFFHAMGGREGLIDT 837
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 838 AVKTAET 844
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 73/88 (82%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
AP EMVG +AAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN+++ K PS T+
Sbjct: 1072 APNEMVGTIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVARNNKTPSTTI 1131
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+L G A+ +KAK V +E+TTLRKV
Sbjct: 1132 YLKGDYAKLPQKAKEVQAAIEYTTLRKV 1159
>gi|449329642|gb|AGE95912.1| DNA-directed RNA polymerase II, partial [Encephalitozoon cuniculi]
Length = 1487
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 110/128 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+ +N +LN ARD +G SA++SL+E NN+K MV+AGSKGS INISQV ACVGQ
Sbjct: 702 MTMKESFESHLNLVLNRARDVSGTSAQRSLSENNNMKTMVLAGSKGSFINISQVTACVGQ 761
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF RTLPHF+KDDY +SRGFVENSYL GL P EFFFHAMGGREGLIDT
Sbjct: 762 QNVEGKRIPFGFSHRTLPHFVKDDYTGKSRGFVENSYLTGLDPEEFFFHAMGGREGLIDT 821
Query: 122 AVKTAETA 129
A+KTAET
Sbjct: 822 AIKTAETG 829
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
AK P EMVG LAAQS+GEPATQMTLNTFH AGV+S VT+GVPRLKEI N++K K PS
Sbjct: 1041 AKITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVAS-TVTMGVPRLKEIFNVTKNLKTPS 1099
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+ ++L + + E AK + +E T++ +
Sbjct: 1100 MKIYLDREHGKSIEAAKTIQNEIECLTVKDL 1130
>gi|19172989|ref|NP_597540.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
gi|51702033|sp|Q8SSC4.1|RPB1_ENCCU RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|19168656|emb|CAD26175.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
Length = 1599
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 110/128 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+ +N +LN ARD +G SA++SL+E NN+K MV+AGSKGS INISQV ACVGQ
Sbjct: 702 MTMKESFESHLNLVLNRARDVSGTSAQRSLSENNNMKTMVLAGSKGSFINISQVTACVGQ 761
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF RTLPHF+KDDY +SRGFVENSYL GL P EFFFHAMGGREGLIDT
Sbjct: 762 QNVEGKRIPFGFSHRTLPHFVKDDYTGKSRGFVENSYLTGLDPEEFFFHAMGGREGLIDT 821
Query: 122 AVKTAETA 129
A+KTAET
Sbjct: 822 AIKTAETG 829
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
AK P EMVG LAAQS+GEPATQMTLNTFH AGV+S VT+GVPRLKEI N++K K PS
Sbjct: 1041 AKITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVAS-TVTMGVPRLKEIFNVTKNLKTPS 1099
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+ ++L + + E AK + +E T++ +
Sbjct: 1100 MKIYLDREHGKSIEAAKTIQNEIECLTVKDL 1130
>gi|337263096|gb|AEI69259.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
romaleae]
gi|396081019|gb|AFN82638.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
romaleae SJ-2008]
Length = 1515
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 109/128 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+ +N +LN ARD +G SA++SL+E NN+K MV+AGSKGS INISQV ACVGQ
Sbjct: 702 MTMKESFESHLNLVLNRARDVSGTSAQRSLSENNNMKTMVLAGSKGSFINISQVTACVGQ 761
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF RTLPHF+KDDY SRGFVENSYL GL P EFFFHAMGGREGLIDT
Sbjct: 762 QNVEGKRIPFGFSHRTLPHFVKDDYTGRSRGFVENSYLTGLDPEEFFFHAMGGREGLIDT 821
Query: 122 AVKTAETA 129
A+KTAET
Sbjct: 822 AIKTAETG 829
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 69/108 (63%), Gaps = 4/108 (3%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ P EMVG LAAQS+GEPATQMTLNTFH AGVSS VT+GVPRLKEI N++K K PS
Sbjct: 1041 ARITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSS-TVTMGVPRLKEIFNVTKNLKTPS 1099
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVLYIILRPATHYQVELIS 239
+ ++L + E AK + +E ++ + L +Y E+ S
Sbjct: 1100 MKIYLDKDHCKTIESAKVIQNEIECLCVKD---LCLSSEIYYDPEITS 1144
>gi|164657340|ref|XP_001729796.1| hypothetical protein MGL_2782 [Malassezia globosa CBS 7966]
gi|159103690|gb|EDP42582.1| hypothetical protein MGL_2782 [Malassezia globosa CBS 7966]
Length = 1607
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 94/127 (74%), Positives = 108/127 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE VNRILN ARD G A+++L ++NN+K MV+AGSKGS INISQ+ ACVGQ
Sbjct: 515 MTLRESFEANVNRILNKARDDVGSHAEQNLPDWNNVKQMVIAGSKGSFINISQMSACVGQ 574
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGFR R+LPHF KDDY PESRGFVENSYL GLT EFFFHAM GREGLIDT
Sbjct: 575 QSVEGKRIPFGFRHRSLPHFTKDDYTPESRGFVENSYLRGLTAHEFFFHAMAGREGLIDT 634
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 635 AVKTAET 641
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 69/87 (79%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN ++ K PS+TV+
Sbjct: 865 PGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVY 924
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + + +E AK + L +TTL+ V
Sbjct: 925 LHPKYSASSESAKIIQTALAYTTLQTV 951
>gi|388580196|gb|EIM20513.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1752
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 96/127 (75%), Positives = 109/127 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE VN LN ARD+ G SA+ SL + NN+K MVVAGSKGS INISQ+ ACVGQ
Sbjct: 718 MTIRESFEASVNMELNQARDQVGKSAQHSLKDDNNVKQMVVAGSKGSFINISQMSACVGQ 777
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDD+GPESRGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 778 QSVEGKRIPFGFKYRTLPHFTKDDFGPESRGFVENSYLRGLTPSEFFFHAMAGREGLIDT 837
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 838 AVKTAET 844
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/104 (63%), Positives = 76/104 (73%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAK-CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + ET N APGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLK
Sbjct: 1054 DWVIGEIETRFNQSIVAPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLK 1113
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
EIIN++ K PSLTV+L + +RD KNV LEHTTL+ +
Sbjct: 1114 EIINVATNIKTPSLTVYLDEETSRDIVAVKNVQAELEHTTLKTI 1157
>gi|71082701|gb|AAZ23554.1| DNA-dependent RNA polymerase II largest subunit [Nosema plutellae]
Length = 442
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/127 (74%), Positives = 111/127 (87%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+QVN +LN ARD +G S +KSL + NN+KAMV++GSKGS INISQV ACVGQ
Sbjct: 80 MTMKESFESQVNYVLNKARDVSGTSTQKSLNKCNNMKAMVLSGSKGSFINISQVTACVGQ 139
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF RTLPHF K+DY +SRGFVENSYL+GL+P EFFFHAMGGREGLIDT
Sbjct: 140 QNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGGREGLIDT 199
Query: 122 AVKTAET 128
A+KTAET
Sbjct: 200 AIKTAET 206
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 127 ETACNAKCAPGEMVGALAAQSLGEPATQMTLNTF 160
+ +++ A EMVG LAAQS+GEPATQMTLNTF
Sbjct: 409 DKVMSSRVAHNEMVGTLAAQSVGEPATQMTLNTF 442
>gi|358030890|dbj|BAL15354.1| RNA polymerase II largest subunit, partial [Basidiobolus
haptosporus]
Length = 976
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 95/128 (74%), Positives = 112/128 (87%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN ARD +G SA++SL E NN+K MVV+GSKGS +NISQ+ ACVGQ
Sbjct: 649 MTIRETFESKVSRELNRARDHSGQSAERSLKEENNVKQMVVSGSKGSFVNISQMSACVGQ 708
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDYGPES+GFVENSYL LTP EFFFHAMGGREGLIDT
Sbjct: 709 QDVEGKRIPFGFKFRTLPHFTKDDYGPESKGFVENSYLRRLTPQEFFFHAMGGREGLIDT 768
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 769 AVKTAETG 776
>gi|12642610|gb|AAK00309.1|AF315819_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Botryocladia
uvarioides]
Length = 1712
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 96/127 (75%), Positives = 108/127 (85%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+ ++FE +VN++LN ARDK+G SA+KSL + NN+K MV AGSKGS INISQ+ ACVGQQ
Sbjct: 622 GMMESFETEVNKVLNGARDKSGASAQKSLLKSNNIKRMVSAGSKGSFINISQICACVGQQ 681
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRI +GF RTLPHF DD GPESRGFVENSYL GLTPSEFFFHAMGGREGLIDTA
Sbjct: 682 NVEGKRIAYGFNGRTLPHFATDDLGPESRGFVENSYLRGLTPSEFFFHAMGGREGLIDTA 741
Query: 123 VKTAETA 129
VKTAET
Sbjct: 742 VKTAETG 748
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 72/91 (79%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A APGE +GA+AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK K PS
Sbjct: 1001 AIAAPGENIGAIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVSKHTKTPS 1060
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTV+L + ++D KAK + L+ T L V
Sbjct: 1061 LTVYLRDKYSKDKGKAKEIQASLQATNLYDV 1091
>gi|194460387|gb|ACF71868.1| RNA polymerase II [Euglossa orellana]
Length = 257
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 96/102 (94%), Positives = 98/102 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI QVIACVGQQ
Sbjct: 154 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINIXQVIACVGQQ 213
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 104
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGF NSYLAGLTP
Sbjct: 214 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFXXNSYLAGLTP 255
>gi|110808649|gb|ABG91163.1| DNA-dependent RNA polymerase II largest subunit [Nosema
spodopterae]
Length = 441
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 94/127 (74%), Positives = 111/127 (87%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+QVN +LN ARD +G S +KSL + NN+KAMV++GSKGS INISQV ACVGQ
Sbjct: 79 MTMKESFESQVNYVLNKARDVSGTSTQKSLNKCNNMKAMVLSGSKGSFINISQVTACVGQ 138
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF RTLPHF K+DY +SRGFVENSYL+GL+P EFFFHAMGGREGLIDT
Sbjct: 139 QNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGGREGLIDT 198
Query: 122 AVKTAET 128
A+KTAET
Sbjct: 199 AIKTAET 205
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 127 ETACNAKCAPGEMVGALAAQSLGEPATQMTLNTF 160
+ +++ A EMVG LAAQS+GEPATQMTLNTF
Sbjct: 408 DKVMSSRVAHNEMVGTLAAQSVGEPATQMTLNTF 441
>gi|345652271|gb|AEO15117.1| RNA polymerase II largest subunit [Nosema antheraeae]
Length = 459
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 111/128 (86%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+QVN +LN ARD +G S +KSL + NN+KAMV++GSKGS INISQV ACVGQ
Sbjct: 101 MTMKESFESQVNYVLNKARDVSGTSTQKSLNKCNNMKAMVLSGSKGSFINISQVTACVGQ 160
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF RTLPHF K+DY +SRGFVENSYL+GL+P EFFFHAMGGREGLIDT
Sbjct: 161 QNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGGREGLIDT 220
Query: 122 AVKTAETA 129
A+KTAET
Sbjct: 221 AIKTAETG 228
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 131 NAKCAPGEMVGALAAQSLGEPATQMT 156
+++ A EMVG LAAQS+GEPATQMT
Sbjct: 434 SSRVAHNEMVGTLAAQSVGEPATQMT 459
>gi|219127092|ref|XP_002183777.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405014|gb|EEC44959.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1706
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 106/123 (86%)
Query: 6 QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVE 65
++FE VN++LN ARD G SA+ SL E N++KAMV AGSKGS INISQ+IACVGQQNVE
Sbjct: 658 ESFEQLVNKVLNTARDHAGKSAQSSLDETNSVKAMVTAGSKGSFINISQIIACVGQQNVE 717
Query: 66 GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 125
GKRIP+GF+KRTLPHF KDD G ESRGFVENSYL GL+P EFFFHAMGGREGLIDTA KT
Sbjct: 718 GKRIPYGFKKRTLPHFSKDDIGSESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTACKT 777
Query: 126 AET 128
AET
Sbjct: 778 AET 780
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 77/106 (72%), Gaps = 1/106 (0%)
Query: 119 IDTAVKTAETACN-AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRL 177
++ V ET N A PGEM G LAAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL
Sbjct: 999 LNWVVGEIETRFNIAMVNPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL 1058
Query: 178 KEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKVL 223
KEIIN++K PK P LT++L + + D + A+ V+ LE T L V+
Sbjct: 1059 KEIINVAKTPKTPGLTIYLQEEVSGDEKVAEQVVAMLEFTVLGDVV 1104
>gi|194460339|gb|ACF71844.1| RNA polymerase II [Euglossa securigera]
Length = 264
Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 96/102 (94%), Positives = 98/102 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 104
NVEGKRIPFGFRKRTLPHFIKDDYGPE FVENSYLAGLTP
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPEXXXFVENSYLAGLTP 264
>gi|29539342|dbj|BAC67672.1| DNA-directed RNA polymerase II largest subunit [Cyanidioschyzon
merolae]
gi|449019055|dbj|BAM82457.1| RNA polymerase II largest subunit [Cyanidioschyzon merolae strain
10D]
Length = 1819
Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 93/123 (75%), Positives = 106/123 (86%)
Query: 6 QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVE 65
++FE VNR+LN ARDK GG A++SL NN+K MV AGSKGS IN+SQ++ACVGQQNVE
Sbjct: 726 ESFEACVNRVLNSARDKAGGFAQESLLPSNNIKRMVSAGSKGSFINVSQIVACVGQQNVE 785
Query: 66 GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 125
GKRIP+GFR+RTLPHF+ DD PE+RGFVENSYL GLTP E FFHAMGGREGLIDTAVKT
Sbjct: 786 GKRIPYGFRRRTLPHFVVDDLSPEARGFVENSYLRGLTPEEVFFHAMGGREGLIDTAVKT 845
Query: 126 AET 128
AET
Sbjct: 846 AET 848
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/92 (65%), Positives = 74/92 (80%), Gaps = 2/92 (2%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGA+AAQSLGEPATQMTLNTFHFAGVS+KNVTLGVPRLKE+IN++++ K PS
Sbjct: 1070 ARATPGEMVGAVAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINVARQAKTPS 1129
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVL 223
+TV+L ++ +D E A V LE LR V+
Sbjct: 1130 VTVYL--KSGKDKELANIVQSELEQCRLRDVV 1159
>gi|120561164|gb|ABM26977.1| RNA polymerase II largest subunit [Nosema apis]
Length = 728
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 112/127 (88%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+++K++FE+QVN ILN ARD +G S +KSL NNLK MV++GSKGS INISQV+ACVGQ
Sbjct: 602 MSMKESFESQVNHILNKARDVSGTSTQKSLNLSNNLKTMVLSGSKGSFINISQVMACVGQ 661
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ RTLPHF+K+DY +SRGFVENSY+ GL+P EF+FHAMGGREGLIDT
Sbjct: 662 QNVEGKRIPFGFKYRTLPHFLKEDYSGKSRGFVENSYVKGLSPEEFYFHAMGGREGLIDT 721
Query: 122 AVKTAET 128
A+KTAET
Sbjct: 722 AIKTAET 728
>gi|120561170|gb|ABM26980.1| RNA polymerase II largest subunit [Nosema granulosis]
Length = 917
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 111/128 (86%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+QVN +LN ARD +G S +KSL + NN+KAMV++GSKGS INISQV ACVGQ
Sbjct: 569 MTMKESFESQVNFVLNKARDVSGTSTQKSLNQCNNMKAMVLSGSKGSFINISQVTACVGQ 628
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF RTLPHF K+DY +SRGFVENSYL+GL+P EFFFHAMGGREGLIDT
Sbjct: 629 QNVEGKRIPFGFAYRTLPHFSKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGGREGLIDT 688
Query: 122 AVKTAETA 129
A+KTAET
Sbjct: 689 AIKTAETG 696
>gi|412992604|emb|CCO18584.1| RNA polymerase II largest subunit [Bathycoccus prasinos]
Length = 1667
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 109/127 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++Q+FE +VN+ILN ARD G +A+ SL + NN+K MV AGSKGS +NISQ+ ACVGQ
Sbjct: 670 MTMQQSFEQKVNQILNKARDDAGTAAQVSLKDSNNVKMMVQAGSKGSFLNISQMCACVGQ 729
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIP+GF R+LPHF KDD+GPESRGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 730 QNVEGKRIPYGFVDRSLPHFSKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 789
Query: 122 AVKTAET 128
AVKT+ET
Sbjct: 790 AVKTSET 796
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 69/91 (75%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PG+ +G +AAQS+GEPATQMTLNTFHFAGVS+KNVTLGVPRLKEIINI+K K PS
Sbjct: 1024 ALAPPGDGIGTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKSIKTPS 1083
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LT+ L A D AKNV LE+TTL V
Sbjct: 1084 LTIALRKDLASDRGHAKNVQATLEYTTLASV 1114
>gi|325183802|emb|CCA18261.1| predicted protein putative [Albugo laibachii Nc14]
Length = 1819
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 94/125 (75%), Positives = 107/125 (85%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FE VN++LN ARD+ G A+ SL E NN+KA V +GSKGS INISQ+IACVGQQN
Sbjct: 729 MVESFEQLVNKVLNTARDQAGREAQGSLDETNNIKATVTSGSKGSFINISQIIACVGQQN 788
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GF+ RTLPH+ KDD GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 789 VEGKRIPYGFQHRTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLIDTAV 848
Query: 124 KTAET 128
KTAET
Sbjct: 849 KTAET 853
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 71/86 (82%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFL 196
GEM G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRLKEI+NI+K + PSL +FL
Sbjct: 1093 GEMAGVVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIMNIAKDVRTPSLQIFL 1152
Query: 197 TGQAARDAEKAKNVLCRLEHTTLRKV 222
T A DA+KAK + +LE+TTL V
Sbjct: 1153 TPDCAHDADKAKFIQSQLEYTTLADV 1178
>gi|312273887|gb|ADQ57313.1| RNA polymerase II largest subunit, partial [Nosema disstriae]
Length = 974
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 111/128 (86%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+QVN +LN ARD +G S +KSL + NN+KAMV++GSKGS INISQV ACVGQ
Sbjct: 616 MTMKESFESQVNYVLNKARDGSGTSTQKSLNKCNNMKAMVLSGSKGSFINISQVTACVGQ 675
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF RTLPHF K+DY +SRGFVENSYL+GL+P EFFFHAMGGREGLIDT
Sbjct: 676 QNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGGREGLIDT 735
Query: 122 AVKTAETA 129
A+KTAET
Sbjct: 736 AIKTAETG 743
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 131 NAKCAPGEMVGALAAQSLGEPATQMT 156
+++ A EMVG LAAQS+GEPATQMT
Sbjct: 949 SSRVAHNEMVGTLAAQSVGEPATQMT 974
>gi|443896740|dbj|GAC74083.1| ngg1-interacting factor 3 protein NIF3L1 [Pseudozyma antarctica T-34]
Length = 1947
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/127 (74%), Positives = 107/127 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE VNR+LN ARD G A+ SL ++NN+K MVVAGSKGS INISQ+ ACVGQ
Sbjct: 885 MTLRESFEANVNRVLNQARDDVGNHAESSLPDFNNVKQMVVAGSKGSFINISQMSACVGQ 944
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGFR R+LPHF KDD+ PESRGFVENSYL GLT EFFFHAM GREGLIDT
Sbjct: 945 QSVEGKRIPFGFRHRSLPHFTKDDFTPESRGFVENSYLRGLTAQEFFFHAMAGREGLIDT 1004
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 1005 AVKTAET 1011
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN ++ K PS+TV+
Sbjct: 1235 PGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVY 1294
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
LT + ++ E AK + L HTTL+ V
Sbjct: 1295 LTEEYSQSQESAKVIQTALAHTTLQTV 1321
>gi|312273883|gb|ADQ57311.1| RNA polymerase II largest subunit, partial [Nosema sp. CO 05-11]
Length = 974
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 111/128 (86%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+QVN +LN ARD +G S +KSL + NN+KAMV++GSKGS INISQV ACVGQ
Sbjct: 616 MTMKESFESQVNYVLNKARDVSGTSTQKSLNKCNNMKAMVLSGSKGSFINISQVTACVGQ 675
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF RTLPHF K+DY +SRGFVENSYL+GL+P EFFFHAMGGREGLIDT
Sbjct: 676 QNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGGREGLIDT 735
Query: 122 AVKTAETA 129
A+KTAET
Sbjct: 736 AIKTAETG 743
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 131 NAKCAPGEMVGALAAQSLGEPATQMT 156
++K A MVG LAAQS+GEPATQMT
Sbjct: 949 SSKVAHNGMVGTLAAQSVGEPATQMT 974
>gi|397135965|gb|AFO11477.1| RNA polymerase I, partial [Lipomyces starkeyi]
Length = 794
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE +V+++LN ARD G SA+ SLTE NN+K MVVAGSKGS INISQ+ ACVGQ
Sbjct: 520 MTLRESFEQKVSKVLNTARDTAGRSAETSLTEANNVKQMVVAGSKGSFINISQMSACVGQ 579
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKR+PFGF RTLPHF KDDY PESRGF+ENSYL GLTP EFFFHAM GREG+IDT
Sbjct: 580 QMVEGKRVPFGFSYRTLPHFTKDDYSPESRGFIENSYLRGLTPQEFFFHAMAGREGIIDT 639
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 640 AVKTAETG 647
>gi|83320430|gb|ABC02842.1| RNA polymerase II largest subunit, partial [Cladochytrium
replicatum]
Length = 981
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE+ VN L AR++TG + SL E NN K MVVAGSKGSNINISQ++ACVGQ
Sbjct: 617 MTVRESFESLVNYELGRARERTGARSTNSLREQNNFKQMVVAGSKGSNINISQIMACVGQ 676
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ RTLPHF KDD+ P+SRGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 677 QNVEGKRIPFGFKGRTLPHFKKDDHSPQSRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 736
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 737 AVKTAETG 744
>gi|12642618|gb|AAK00313.1|AF315823_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Stylonychia
mytilus]
Length = 1678
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 106/127 (83%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
++ ++FE VN+ LN ARD G A L+ +N LKAMV AGSKGSN+NISQ++ACVGQQ
Sbjct: 611 SMMESFEASVNQCLNKARDDCGNMALADLSSWNRLKAMVYAGSKGSNLNISQIMACVGQQ 670
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF KR+LPHF KDD+GPES+GFVEN YL GLTP EFFFHAMGGREGLIDTA
Sbjct: 671 NVEGKRIPFGFYKRSLPHFSKDDFGPESKGFVENCYLNGLTPQEFFFHAMGGREGLIDTA 730
Query: 123 VKTAETA 129
VKTAET
Sbjct: 731 VKTAETG 737
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 70/88 (79%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG++ AQS+GEPATQMTLNTFHFAGVS+KNVTLGVPRLKEIIN++K K PS+ +F
Sbjct: 976 PGEMVGSIGAQSMGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVAKNIKTPSMKIF 1035
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKVL 223
L + +D A + R+EHTTL V+
Sbjct: 1036 LKDKDKQDERIATIIGGRIEHTTLCHVV 1063
>gi|58395824|gb|AAW72740.1| RNA polymerase II largest subunit [Gautieria otthii]
Length = 597
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 109/128 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE++VNR LN ARD+TG +KSL + NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 231 MTIRESFESKVNRELNVARDETGQDVQKSLKDDNNVKQMVVAGSKGSFINISQMAVCVGQ 290
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGFR RTLPHF KDDY PE+RGFVEN YL GLTP E+FFHAMGGREGLIDT
Sbjct: 291 QSVEGKRIPFGFRHRTLPHFTKDDYSPEARGFVENFYLRGLTPQEYFFHAMGGREGLIDT 350
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 351 AVKTAETG 358
>gi|13274162|emb|CAC33859.1| RNA polymerase II largest subunit [Nosema tyriae]
Length = 986
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 111/128 (86%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+QVN +LN ARD +G S +KSL + NN+KAMV++GSKGS INISQV ACVGQ
Sbjct: 627 MTMKESFESQVNYVLNKARDVSGTSTQKSLNKCNNMKAMVLSGSKGSFINISQVTACVGQ 686
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF RTLPHF K+DY +SRGFVENSYL+GL+P EFFFHAMGGREGLIDT
Sbjct: 687 QNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGGREGLIDT 746
Query: 122 AVKTAETA 129
A+KTAET
Sbjct: 747 AIKTAETG 754
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 127 ETACNAKCAPGEMVGALAAQSLGEPATQMTL 157
+ +++ A EMVG LAAQS+GEPATQMTL
Sbjct: 956 DKVMSSRVAHNEMVGTLAAQSVGEPATQMTL 986
>gi|120561166|gb|ABM26978.1| RNA polymerase II largest subunit [Nosema bombycis]
Length = 982
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 111/128 (86%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+QVN +LN ARD +G S +KSL + NN+KAMV++GSKGS INISQV ACVGQ
Sbjct: 631 MTMKESFESQVNYVLNKARDVSGTSTQKSLNKCNNMKAMVLSGSKGSFINISQVTACVGQ 690
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF RTLPHF K+DY +SRGFVENSYL+GL+P EFFFHAMGGREGLIDT
Sbjct: 691 QNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGGREGLIDT 750
Query: 122 AVKTAETA 129
A+KTAET
Sbjct: 751 AIKTAETG 758
>gi|358030892|dbj|BAL15355.1| RNA polymerase II largest subunit, partial [Olpidium bornovanus]
Length = 838
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/128 (75%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE QVN LN ARD+ G SA++SL NN+K MVVAGSKGS INISQ+ ACVGQ
Sbjct: 463 MTIRETFEAQVNSALNTARDQAGKSAQQSLNPENNVKQMVVAGSKGSYINISQMTACVGQ 522
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ RTLP F KDD+ PESRGFVENSYL GLTP EF+FHAMGGREGLIDT
Sbjct: 523 QNVEGKRIPFGFKYRTLPCFTKDDHTPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDT 582
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 583 AVKTAETG 590
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/22 (90%), Positives = 21/22 (95%)
Query: 135 APGEMVGALAAQSLGEPATQMT 156
APGEMVG LAAQS+GEPATQMT
Sbjct: 817 APGEMVGPLAAQSIGEPATQMT 838
>gi|38232417|gb|AAR15044.1| RNA polymerase II largest subunit [Macrobiotus islandicus]
Length = 297
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/106 (88%), Positives = 100/106 (94%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILN+ARDKTG SA+KSL+++NN KAMVVAGSKGS INISQVIACVGQQ
Sbjct: 192 TLRQTFENQVNRILNEARDKTGSSAQKSLSDHNNFKAMVVAGSKGSKINISQVIACVGQQ 251
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 108
NVEGKRIPFGFR RTLPHFI DDYGPESRGFVENSYLAGLTPSEFF
Sbjct: 252 NVEGKRIPFGFRHRTLPHFITDDYGPESRGFVENSYLAGLTPSEFF 297
>gi|312273881|gb|ADQ57310.1| RNA polymerase II largest subunit, partial [Nosema fumiferanae]
Length = 939
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 111/128 (86%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+QVN +LN ARD +G S +KSL + NN+KAMV++GSKGS INISQV ACVGQ
Sbjct: 616 MTMKESFESQVNYVLNKARDVSGTSTQKSLNKCNNMKAMVLSGSKGSFINISQVTACVGQ 675
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF RTLPHF K+DY +SRGFVENSYL+GL+P EFFFHAMGGREGLIDT
Sbjct: 676 QNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGGREGLIDT 735
Query: 122 AVKTAETA 129
A+KTAET
Sbjct: 736 AIKTAETG 743
>gi|397135906|gb|AFO11448.1| RNA polymerase I, partial [Yamadazyma philogaea]
Length = 865
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/128 (74%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L++TFEN V+R+LN ARD G SA+ SL + NN+K MV +GSKGS INISQ+ ACVGQ
Sbjct: 519 MTLRETFENNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 578
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 579 QIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 638
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 639 AVKTAETG 646
>gi|397135967|gb|AFO11478.1| RNA polymerase I, partial [Dipodascopsis anomala]
Length = 872
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/127 (74%), Positives = 108/127 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE +V+++LN ARD G SA+ SLT+ NN+K MVVAGSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEQKVSKVLNQARDTAGRSAETSLTDANNVKQMVVAGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF RTLPHF KDDY PESRGF+ENSYL GLTP EFFFHAM GREG+IDT
Sbjct: 581 QIVEGKRIPFGFSYRTLPHFTKDDYSPESRGFIENSYLRGLTPQEFFFHAMAGREGIIDT 640
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 641 AVKTAET 647
>gi|303388581|ref|XP_003072524.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
intestinalis ATCC 50506]
gi|303301665|gb|ADM11164.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
intestinalis ATCC 50506]
Length = 1543
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 110/128 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+ +N +LN ARD +G SA++SL+ NN+K MV+AGSKGS INISQV ACVGQ
Sbjct: 702 MTMKESFESHLNLVLNRARDVSGTSAQRSLSGNNNMKTMVLAGSKGSFINISQVTACVGQ 761
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF +RTLPHF+KDDY +SRGFVENSYL GL P EFFFHAMGGREGLIDT
Sbjct: 762 QNVEGKRIPFGFSQRTLPHFVKDDYTGKSRGFVENSYLTGLDPEEFFFHAMGGREGLIDT 821
Query: 122 AVKTAETA 129
A+KTAET
Sbjct: 822 AIKTAETG 829
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 71/108 (65%), Gaps = 4/108 (3%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
AK P EMVG LAAQS+GEPATQMTLNTFH AGVSS VT+GVPRLKEI N++K K PS
Sbjct: 1041 AKITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSS-TVTMGVPRLKEIFNVTKNLKTPS 1099
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVLYIILRPATHYQVELIS 239
+ ++L + + E AK + +E T++ + L +Y E+ S
Sbjct: 1100 MKIYLDKEHCKTIELAKTIQNEIECLTVKD---LCLSSEIYYDPEITS 1144
>gi|222639936|gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japonica Group]
Length = 1526
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/115 (82%), Positives = 101/115 (87%)
Query: 14 RILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGF 73
++LN ARD G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF
Sbjct: 409 KVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 468
Query: 74 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 128
RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE LIDTAVKT+ET
Sbjct: 469 IDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRESLIDTAVKTSET 523
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 76/90 (84%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+V
Sbjct: 749 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 808
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKVLY 224
+L + + E AKNV C LE+TTLR V +
Sbjct: 809 YLKPEVNKKKELAKNVQCALEYTTLRSVTH 838
>gi|428671620|gb|EKX72538.1| DNA-directed RNA polymerase II largest subunit, putative [Babesia
equi]
Length = 1733
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/126 (73%), Positives = 109/126 (86%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+L ++FE +VN+ LNDAR+++G A +SL E NN+ AMV +GSKGS INISQ+IACVGQQ
Sbjct: 722 SLFESFEARVNKELNDAREQSGTIAAQSLDERNNILAMVNSGSKGSTINISQIIACVGQQ 781
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFR R+LPHFIK DYGPESRGFV NSYL+GLTP E FFHAMGGREG+IDTA
Sbjct: 782 NVEGKRIPFGFRDRSLPHFIKHDYGPESRGFVSNSYLSGLTPQEMFFHAMGGREGIIDTA 841
Query: 123 VKTAET 128
KT+ET
Sbjct: 842 CKTSET 847
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 74/88 (84%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGE VGA+AAQS+GEPATQMTLNTFHFAGVSSKNVTLG+PRLKE+IN+ + K PSLT+
Sbjct: 1078 PGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVRNVKTPSLTIH 1137
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKVL 223
L A+D E+AK++ RLE+TTL KV+
Sbjct: 1138 LEEGVAQDQERAKDMQTRLEYTTLDKVV 1165
>gi|312273885|gb|ADQ57312.1| RNA polymerase II largest subunit, partial [Nosema sp. CPP 04-02]
Length = 988
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 111/128 (86%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+QVN +LN ARD +G S +KSL + NN+KAMV++GSKGS INISQV ACVGQ
Sbjct: 630 MTMKESFESQVNYVLNKARDVSGISTQKSLNKCNNMKAMVLSGSKGSFINISQVTACVGQ 689
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF RTLPHF K+DY +SRGFVENSYL+GL+P EFFFHAMGGREGLIDT
Sbjct: 690 QNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGGREGLIDT 749
Query: 122 AVKTAETA 129
A+KTAET
Sbjct: 750 AIKTAETG 757
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 22/26 (84%)
Query: 131 NAKCAPGEMVGALAAQSLGEPATQMT 156
++K A EMVG LAAQS+GEPATQMT
Sbjct: 963 SSKVAHNEMVGTLAAQSVGEPATQMT 988
>gi|403365508|gb|EJY82539.1| hypothetical protein OXYTRI_19848 [Oxytricha trifallax]
Length = 1782
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 103/127 (81%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+ +FE VN+ LN ARD G A L +N LKAMV AGSKGSN+NISQ++ACVGQQ
Sbjct: 700 GMMDSFEASVNQCLNKARDDCGNMALADLQSWNRLKAMVYAGSKGSNLNISQIMACVGQQ 759
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF +R+LPHF KDDYGPES+GFVEN YL GLTP EFFFHAMGGREGLIDTA
Sbjct: 760 NVEGKRIPFGFHRRSLPHFSKDDYGPESKGFVENCYLNGLTPQEFFFHAMGGREGLIDTA 819
Query: 123 VKTAETA 129
VKTAET
Sbjct: 820 VKTAETG 826
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 71/92 (77%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVG++ AQS+GEPATQMTLNTFHFAGVS+KNVTLGVPRLKEIIN++K K PS
Sbjct: 1061 ALVNPGEMVGSIGAQSMGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVAKNIKTPS 1120
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVL 223
+ ++L + +D + A R+EHTTL V+
Sbjct: 1121 MKIYLEDENKQDNKTATMFGGRIEHTTLSHVV 1152
>gi|120561172|gb|ABM26981.1| RNA polymerase II largest subunit [Nosema trichoplusiae]
Length = 989
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 111/128 (86%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+QVN +LN ARD +G S +KSL + NN+KAMV++GSKGS INISQV ACVGQ
Sbjct: 631 MTMKESFESQVNYVLNKARDVSGTSTQKSLNKCNNMKAMVLSGSKGSFINISQVTACVGQ 690
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEG+RIPFGF RTLPHF K+DY +SRGFVENSYL+GL+P EFFFHAMGGREGLIDT
Sbjct: 691 QNVEGRRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGGREGLIDT 750
Query: 122 AVKTAETA 129
A+KTAET
Sbjct: 751 AIKTAETG 758
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 127 ETACNAKCAPGEMVGALAAQSLGEPATQMT 156
+ +++ A EMVG LAAQS+GEPATQMT
Sbjct: 960 DKVMSSRVAHNEMVGTLAAQSVGEPATQMT 989
>gi|38232439|gb|AAR15055.1| RNA polymerase II largest subunit [Richtersius coronifer]
Length = 222
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/105 (89%), Positives = 100/105 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILN+ARDKTG SA+KSL+++NN KAMVVAGSKGS INISQVIACVGQQN
Sbjct: 118 LRQTFENQVNRILNEARDKTGSSAQKSLSDHNNFKAMVVAGSKGSKINISQVIACVGQQN 177
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 108
VEGKRIPFGFR RTLPHFI DDYGPESRGFVENSYLAGLTPSEFF
Sbjct: 178 VEGKRIPFGFRHRTLPHFITDDYGPESRGFVENSYLAGLTPSEFF 222
>gi|299116996|emb|CBN73767.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1904
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/126 (72%), Positives = 110/126 (87%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
++ ++ E+ +N++LN ARD++G SA+ SL E N +KAM AGSKGS INISQ++ACVGQQ
Sbjct: 754 SMMESLESSINKVLNTARDESGTSAQVSLNERNAVKAMADAGSKGSFINISQILACVGQQ 813
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEG+RIP+GF++RTLPHF KDD GPESRGFVENSYL GL+P EFFFHAMGGREGLIDTA
Sbjct: 814 NVEGQRIPYGFKRRTLPHFAKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTA 873
Query: 123 VKTAET 128
VKTAET
Sbjct: 874 VKTAET 879
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 72/97 (74%), Gaps = 5/97 (5%)
Query: 131 NAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAP 190
++K PGEM G LAAQS+GEP TQMTLNTFHFAGVS+KNVTLGVPR+KEIIN++K + P
Sbjct: 1113 SSKVGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTP 1172
Query: 191 SLTVFLTGQA-----ARDAEKAKNVLCRLEHTTLRKV 222
SLT++L +A A E AK V+ LE+ TL +
Sbjct: 1173 SLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDI 1209
>gi|392596906|gb|EIW86228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coniophora puteana RWD-64-598 SS2]
Length = 1746
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 110/127 (86%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE++V R LN ARD++G A+K+L++ NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 717 MTIRESFESKVERELNRARDESGQYAQKNLSDDNNVKQMVVAGSKGSYINISQMSVCVGQ 776
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGFR RTLPHF KDD+ PESRGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 777 QSVEGKRIPFGFRHRTLPHFTKDDFSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDT 836
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 837 AVKTAET 843
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN + K PSLTV+
Sbjct: 1071 PGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINTAVNIKTPSLTVY 1130
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L Q +R+ + AKNV L +T+LR V
Sbjct: 1131 LDPQISRNPDSAKNVQQELAYTSLRTV 1157
>gi|336041421|gb|AEH95288.1| RNA polymerase II largest subunit [Malawimonas californiana]
Length = 1014
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/125 (75%), Positives = 106/125 (84%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L +TFE++VN LN ARDK G SA++SL NN+K MV AGSKGS INI+Q+IACVGQQN
Sbjct: 636 LMETFESKVNSALNTARDKAGKSAEQSLRSSNNVKEMVTAGSKGSFINIAQMIACVGQQN 695
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFR RTLPHF+ DY PE+RGFVENSYL GL P EFFFHAMGGREGLIDTAV
Sbjct: 696 VEGKRIPYGFRNRTLPHFVAADYSPEARGFVENSYLRGLNPQEFFFHAMGGREGLIDTAV 755
Query: 124 KTAET 128
KT+ET
Sbjct: 756 KTSET 760
>gi|120561174|gb|ABM26982.1| RNA polymerase II largest subunit [Vairimorpha cheracis]
Length = 936
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 110/128 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+QVN +LN ARD +G S ++SL NN+KAMV++GSKGS INISQV ACVGQ
Sbjct: 614 MTMKESFESQVNLVLNKARDVSGTSTQRSLNRCNNMKAMVLSGSKGSFINISQVTACVGQ 673
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF RTLPHF K+DY +SRGFVENSYL+GL+P EFFFHAMGGREGLIDT
Sbjct: 674 QNVEGKRIPFGFAYRTLPHFSKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGGREGLIDT 733
Query: 122 AVKTAETA 129
A+KTAET
Sbjct: 734 AIKTAETG 741
>gi|255079898|ref|XP_002503529.1| predicted protein [Micromonas sp. RCC299]
gi|226518796|gb|ACO64787.1| predicted protein [Micromonas sp. RCC299]
Length = 1720
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 107/127 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +Q+FE +VN+ILN ARD G SA+ SL + NN+K V AGSKGS +NISQ+IACVGQ
Sbjct: 703 MTAQQSFEQKVNQILNKARDNAGNSAQTSLDDTNNVKMTVTAGSKGSFLNISQMIACVGQ 762
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF R+LPHF K+D GPE+RGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 763 QNVEGKRIPFGFTDRSLPHFAKNDLGPEARGFVENSYLRGLTPQEFFFHAMGGREGLIDT 822
Query: 122 AVKTAET 128
AVKT+ET
Sbjct: 823 AVKTSET 829
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 70/91 (76%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PG+ +G +AAQS+GEPATQMTLNTFHFAGVS+KNVTLGVPRLKE+INI+KK K PS
Sbjct: 1058 ALAPPGDGIGTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINIAKKIKTPS 1117
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTV L A D AKNV LE+TTL V
Sbjct: 1118 LTVALRKDLAGDRAMAKNVQSILEYTTLHSV 1148
>gi|337263122|gb|AEI69272.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
hellem]
Length = 1478
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+ +N +LN ARD +G SA++SL+ NN+K MV+AGSKGS INISQV ACVGQ
Sbjct: 702 MTMKESFESHLNLVLNRARDVSGTSAQRSLSGNNNMKTMVLAGSKGSFINISQVTACVGQ 761
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF RTLPHF+KDDY SRGFVENSYL GL P EFFFHAMGGREGLIDT
Sbjct: 762 QNVEGKRIPFGFSHRTLPHFVKDDYTGRSRGFVENSYLTGLDPEEFFFHAMGGREGLIDT 821
Query: 122 AVKTAETA 129
A+KTAET
Sbjct: 822 AIKTAETG 829
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ P EMVG LAAQS+GEPATQMTLNTFH AGVSS VT+GVPRLKEI N++K K PS
Sbjct: 1041 ARITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSS-TVTMGVPRLKEIFNVTKNLKTPS 1099
Query: 192 LTVFLTGQAARDAEKAKNVLCRLE 215
+ ++L + E AK + +E
Sbjct: 1100 MKIYLDKDHCKTIESAKAIQNEIE 1123
>gi|120561217|gb|ABM26994.1| RNA polymerase II largest subunit, partial [Mucor hiemalis]
Length = 1009
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 109/128 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE +VN+ LN ARD G A+ SL E NN+K MV++GSKGS INISQ+ ACVGQ
Sbjct: 639 MTLRESFEAKVNQTLNKARDDAGKMAQNSLKEDNNVKQMVISGSKGSFINISQMSACVGQ 698
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIP+GF+ RTLPHF KDD+ PESRGFVENSYL GLTP+EFFFHAMGGREGLIDT
Sbjct: 699 QNVEGKRIPYGFKFRTLPHFSKDDHSPESRGFVENSYLRGLTPTEFFFHAMGGREGLIDT 758
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 759 AVKTAETG 766
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 135 APGEMVGALAAQSLGEPAT 153
APGEMVG +AAQS+GEPAT
Sbjct: 991 APGEMVGTIAAQSIGEPAT 1009
>gi|401825605|ref|XP_003886897.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
50504]
gi|392998054|gb|AFM97916.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
50504]
Length = 1557
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+ +N +LN ARD +G SA++SL+ NN+K MV+AGSKGS INISQV ACVGQ
Sbjct: 702 MTMKESFESHLNLVLNRARDVSGTSAQRSLSGNNNMKTMVLAGSKGSFINISQVTACVGQ 761
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF RTLPHF+KDDY SRGFVENSYL GL P EFFFHAMGGREGLIDT
Sbjct: 762 QNVEGKRIPFGFSHRTLPHFVKDDYTGRSRGFVENSYLTGLDPEEFFFHAMGGREGLIDT 821
Query: 122 AVKTAETA 129
A+KTAET
Sbjct: 822 AIKTAETG 829
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ P EMVG LAAQS+GEPATQMTLNTFH AGVSS VT+GVPRLKEI N++K K PS
Sbjct: 1041 ARITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSS-TVTMGVPRLKEIFNVTKNLKTPS 1099
Query: 192 LTVFLTGQAARDAEKAKNVLCRLE 215
+ ++L + E AK + +E
Sbjct: 1100 MKIYLDKDHCKTIESAKAIQNEIE 1123
>gi|323454233|gb|EGB10103.1| hypothetical protein AURANDRAFT_36761 [Aureococcus anophagefferens]
Length = 1738
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 90/123 (73%), Positives = 108/123 (87%)
Query: 6 QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVE 65
++FE VNR+LN AR G S ++S++E NN+K+M +AGSKG++INISQ+IACVGQQNVE
Sbjct: 657 ESFEAMVNRVLNAARTSAGLSVQESISEANNVKSMAMAGSKGNDINISQIIACVGQQNVE 716
Query: 66 GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 125
GKRIP+GFR+RTLPHF KDD GPESRGFVENSYL GL+P EF+FHAMGGREGLIDTA KT
Sbjct: 717 GKRIPYGFRRRTLPHFAKDDLGPESRGFVENSYLRGLSPQEFYFHAMGGREGLIDTACKT 776
Query: 126 AET 128
A+T
Sbjct: 777 AQT 779
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 71/91 (78%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ GEM G LAAQS+GEPATQMTLNTFHFAGVS+KNVTLGVPRL EI+N++K + PS
Sbjct: 1010 ARAHAGEMCGVLAAQSMGEPATQMTLNTFHFAGVSAKNVTLGVPRLNEILNVAKTVRTPS 1069
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LT++L + D EKA+ V +LEHTTL V
Sbjct: 1070 LTIYLAPEIKDDEEKAREVQAKLEHTTLGDV 1100
>gi|403175763|ref|XP_003334524.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375171744|gb|EFP90105.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 1703
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE +VNR LN ARD G SA++SL + NN+K MV AGSKGS INISQ+ ACVGQ
Sbjct: 726 MTIRESFEAKVNRALNTARDNAGRSAEQSLKDDNNVKQMVTAGSKGSFINISQMSACVGQ 785
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIP+GF+ RTLPHF KDDY PESRGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 786 QSVEGKRIPYGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDT 845
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 846 AVKTAETG 853
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 70/88 (79%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN++ K PSLTV
Sbjct: 1077 APGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLTV 1136
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+L A D E AK++ L HTTL+ V
Sbjct: 1137 YLNENIANDIEAAKDIQTELAHTTLKTV 1164
>gi|71019559|ref|XP_760010.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
gi|46099536|gb|EAK84769.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
Length = 1774
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 107/127 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE VNR+LN ARD G A+ SL ++NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 722 MTLRESFEANVNRVLNQARDDVGNHAETSLPDFNNVKQMVVSGSKGSFINISQMSACVGQ 781
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGFR R+LPHF KDD+ PESRGFVENSYL GLT EFFFHAM GREGLIDT
Sbjct: 782 QSVEGKRIPFGFRHRSLPHFTKDDFTPESRGFVENSYLRGLTAQEFFFHAMAGREGLIDT 841
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 842 AVKTAET 848
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN ++ K PS+TV+
Sbjct: 1072 PGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVY 1131
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
LT Q ++ E AK + L HTTL+ V
Sbjct: 1132 LTEQYSQSQESAKVIQTALAHTTLQTV 1158
>gi|384253754|gb|EIE27228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coccomyxa subellipsoidea C-169]
Length = 1566
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ + ++FE QVN++LN ARD G A+ SL + NN+ MV AGSKGS INISQ+IACVGQ
Sbjct: 646 MTMMESFEQQVNQVLNTARDDAGKLAQSSLDDTNNVVRMVTAGSKGSFINISQMIACVGQ 705
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF++RTLPHF KDD GPESRGFVENSYL GLTP E FFHAMGGREGLIDT
Sbjct: 706 QNVEGKRIPFGFQRRTLPHFTKDDLGPESRGFVENSYLRGLTPQELFFHAMGGREGLIDT 765
Query: 122 AVKTAET 128
AVKT+ T
Sbjct: 766 AVKTSST 772
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/104 (69%), Positives = 82/104 (78%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + ET +A A PGEM+G +AAQS+GEP TQMTLNTFHFAGVS+KNVTLGVPRL
Sbjct: 984 DWILGEIETRFHAALAYPGEMIGTVAAQSIGEPTTQMTLNTFHFAGVSAKNVTLGVPRLT 1043
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
EIINI+K K PSLTVFL G+A+RD E AK V C LE+TTLRKV
Sbjct: 1044 EIINIAKNIKTPSLTVFLLGEASRDREAAKQVQCSLEYTTLRKV 1087
>gi|343424938|emb|CBQ68476.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Sporisorium reilianum SRZ2]
Length = 1785
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 107/127 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE VNR+LN ARD G A+ SL ++NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 722 MTLRESFEANVNRVLNQARDDVGNHAEGSLPDFNNVKQMVVSGSKGSFINISQMSACVGQ 781
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGFR R+LPHF KDD+ PESRGFVENSYL GLT EFFFHAM GREGLIDT
Sbjct: 782 QSVEGKRIPFGFRHRSLPHFTKDDFTPESRGFVENSYLRGLTAQEFFFHAMAGREGLIDT 841
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 842 AVKTAET 848
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 69/87 (79%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN ++ K PS+TV+
Sbjct: 1072 PGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVY 1131
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
LT Q + E AK + L HTTL+ V
Sbjct: 1132 LTEQYNQSQESAKVIQTALAHTTLQTV 1158
>gi|83320458|gb|ABC02856.1| RNA polymerase II largest subunit, partial [Endogone pisiformis]
Length = 845
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE +VN+ LN ARD G A+ SL E NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 478 MTIRESFEAKVNQALNKARDDAGKKAQASLREDNNVKQMVVSGSKGSFINISQMSACVGQ 537
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIP+GF+ RTLPHF KDD+ PESRGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 538 QNVEGKRIPYGFKFRTLPHFTKDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 597
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 598 AVKTAETG 605
>gi|156083004|ref|XP_001608986.1| DNA-directed RNA polymerase II largest subunit [Babesia bovis T2Bo]
gi|154796236|gb|EDO05418.1| DNA-directed RNA polymerase II largest subunit, putative [Babesia
bovis]
Length = 1746
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 92/126 (73%), Positives = 109/126 (86%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+L ++FE +VN+ LN+AR+++G A KSL E NN+ AMV +GSKGS INISQ+IACVGQQ
Sbjct: 722 SLFESFEARVNKELNEAREQSGTIAAKSLDERNNILAMVNSGSKGSTINISQIIACVGQQ 781
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKR+PFGFR R+LPHFIK DYGPESRGFV NSYL+GLTP E FFHAMGGREG+IDTA
Sbjct: 782 NVEGKRVPFGFRDRSLPHFIKHDYGPESRGFVSNSYLSGLTPQEMFFHAMGGREGVIDTA 841
Query: 123 VKTAET 128
KT+ET
Sbjct: 842 CKTSET 847
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 74/90 (82%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 193
C PGE VGA+AAQS+GEPATQMTLNTFHFAGVSSKNVTLG+PRLKE+IN+ + K PSLT
Sbjct: 1076 CHPGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVRNVKTPSLT 1135
Query: 194 VFLTGQAARDAEKAKNVLCRLEHTTLRKVL 223
+ L A D E+AK++ RLE+TTL KV+
Sbjct: 1136 IHLDRGVAHDQERAKDMQTRLEYTTLDKVV 1165
>gi|302696011|ref|XP_003037684.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
gi|300111381|gb|EFJ02782.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
Length = 1750
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 105/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++VN LN ARD G A+ L + NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 711 MTIRETFESKVNHELNKARDDAGKDAQDGLKDDNNVKQMVVAGSKGSFINISQMSVCVGQ 770
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGFR RTLPHF KDDY PESRGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 771 QSVEGKRIPFGFRHRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMSGREGLIDT 830
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 831 AVKTAETG 838
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 119 IDTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRL 177
D A+ ET N A PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRL
Sbjct: 1055 FDWAIGEVETKFNQSLANPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRL 1114
Query: 178 KEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
KEIIN++ K P+ T++L + A+ AK V +L TTLR V
Sbjct: 1115 KEIINVAANIKTPAHTIYLVPEKAQSRLGAKAVQEQLAFTTLRTV 1159
>gi|328849370|gb|EGF98552.1| hypothetical protein MELLADRAFT_50989 [Melampsora larici-populina
98AG31]
Length = 1786
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE +VNR LN ARD G SA++SL + NN+K MV AGSKGS INISQ+ ACVGQ
Sbjct: 728 MTIRESFEAKVNRALNMARDNAGRSAEQSLKDDNNVKQMVTAGSKGSFINISQMSACVGQ 787
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIP+GF+ RTLPHF KDDY PESRGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 788 QSVEGKRIPYGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDT 847
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 848 AVKTAETG 855
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 70/89 (78%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 193
APGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN++ K PSLT
Sbjct: 1078 AAPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVALNIKTPSLT 1137
Query: 194 VFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
V+L + + D E AK++ L HT L+ V
Sbjct: 1138 VYLNEELSNDIEAAKDIQTELAHTNLKTV 1166
>gi|397135908|gb|AFO11449.1| RNA polymerase I, partial [Yamadazyma mexicana]
Length = 863
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ SL + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 517 MTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 576
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 577 QIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 636
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 637 AVKTAETG 644
>gi|120561231|gb|ABM27001.1| RNA polymerase II largest subunit, partial [Coelomomyces
stegomyiae]
Length = 1014
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
L +++TFE +VN+ L+D G +A++S E NN+K MVVAGSKGS INISQ+ ACVGQ
Sbjct: 642 LTIRETFEAEVNQTLSDTVTSAGAAAQRSFKEQNNVKQMVVAGSKGSYINISQMSACVGQ 701
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ RTLPHF+KDD+ PESRGFVENSYL GL P EFFFHAMGGREGLIDT
Sbjct: 702 QNVEGKRIPFGFKYRTLPHFVKDDHSPESRGFVENSYLRGLNPQEFFFHAMGGREGLIDT 761
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 762 AVKTAETG 769
>gi|397135910|gb|AFO11450.1| RNA polymerase I, partial [Yamadazyma scolyti]
Length = 863
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ SL + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 517 MTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 576
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF RTLPHF KDDY PES+GF+ENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 577 QIVEGKRIPFGFSDRTLPHFTKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDT 636
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 637 AVKTAETG 644
>gi|3169691|gb|AAC17924.1| RNA polymerase II largest subunit, partial [Pyropia yezoensis]
Length = 1685
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 94/126 (74%), Positives = 108/126 (85%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
++ ++FE +VN++LN ARD +G SA+ SL + NN+K MV AGSKGS INISQ+ ACVGQQ
Sbjct: 639 SMMESFEVEVNKVLNGARDTSGSSAQLSLLKSNNIKRMVSAGSKGSFINISQICACVGQQ 698
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRI +GFR+RTLPHF DD GPESRGFVENSYL GL PSEFFFHAMGGREGLIDTA
Sbjct: 699 NVEGKRISYGFRRRTLPHFRMDDLGPESRGFVENSYLIGLRPSEFFFHAMGGREGLIDTA 758
Query: 123 VKTAET 128
VKTAET
Sbjct: 759 VKTAET 764
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/89 (71%), Positives = 75/89 (84%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFL 196
GEMVGA AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L
Sbjct: 1023 GEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 1082
Query: 197 TGQAARDAEKAKNVLCRLEHTTLRKVLYI 225
G A DAE+AK V L+HTTLR V ++
Sbjct: 1083 RGDAVHDAERAKQVQAELQHTTLRHVTHM 1111
>gi|110808651|gb|ABG91164.1| DNA-dependent RNA polymerase II largest subunit [Nosema bombycis]
Length = 442
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 110/127 (86%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+QVN +LN ARD +G S +KSL + NN+KAMV++GSKGS INISQV ACVGQ
Sbjct: 80 MTMKESFESQVNYVLNKARDVSGTSTQKSLNKCNNMKAMVLSGSKGSFINISQVTACVGQ 139
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF TLPHF K+DY +SRGFVENSYL+GL+P EFFFHAMGGREGLIDT
Sbjct: 140 QNVEGKRIPFGFAYCTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGGREGLIDT 199
Query: 122 AVKTAET 128
A+KTAET
Sbjct: 200 AIKTAET 206
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 131 NAKCAPGEMVGALAAQSLGEPATQMTLNTF 160
+++ A EMVG LAAQS+GEPATQMTLNTF
Sbjct: 413 SSRVAHNEMVGTLAAQSVGEPATQMTLNTF 442
>gi|397135960|gb|AFO11475.1| RNA polymerase I, partial [Dipodascus albidus]
Length = 870
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE V+R LN ARD G SA+KSL E NN+K MV++GSKGS INISQ+ ACVGQ
Sbjct: 519 MTLRESFEQNVSRTLNQARDNAGKSAEKSLKELNNVKQMVISGSKGSFINISQMSACVGQ 578
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIP+GF RTLPHF KDDY PES+GF+ENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 579 QIVEGKRIPYGFADRTLPHFTKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDT 638
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 639 AVKTAETG 646
>gi|397135932|gb|AFO11461.1| RNA polymerase I, partial [Candida blankii]
Length = 872
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L++TFE +V LN+ARD+ G S++ SLTE NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRETFEQKVMVALNEARDQAGKSSQVSLTEKNNVKQMVVSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDD+GPESRGF+ENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QVVEGKRIPFGFADRSLPHFTKDDFGPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|348676924|gb|EGZ16741.1| RNA polymerase II large subunit [Phytophthora sojae]
Length = 1852
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 94/125 (75%), Positives = 105/125 (84%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FE VN +LN ARD+ G A+ SL E NN+KA V +GSKGS INISQ+IACVGQQN
Sbjct: 760 MVESFEGLVNIVLNTARDQAGREAQGSLDETNNIKATVTSGSKGSFINISQIIACVGQQN 819
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GF RTLPH+ KDD GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 820 VEGKRIPYGFNHRTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLIDTAV 879
Query: 124 KTAET 128
KTAET
Sbjct: 880 KTAET 884
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/92 (64%), Positives = 73/92 (79%)
Query: 131 NAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAP 190
+A + GEM G + AQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRLKEI+NI+K + P
Sbjct: 1118 SALVSAGEMAGVVGAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIMNIAKDVRTP 1177
Query: 191 SLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
SL +FLT A DA+KAK + +LE+TTL V
Sbjct: 1178 SLRIFLTPDCAHDADKAKFIQSQLEYTTLADV 1209
>gi|120561209|gb|ABM26990.1| RNA polymerase II largest subunit, partial [Phragmidium sp. MB]
Length = 1013
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE +VNR LN ARD G SA++SL + NN+K MV AGSKGS INISQ+ ACVGQ
Sbjct: 644 MTIRESFEAKVNRALNMARDNAGRSAEQSLKDDNNVKQMVTAGSKGSFINISQMSACVGQ 703
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIP+GF+ RTLPHF KDDY PESRGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 704 QSVEGKRIPYGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDT 763
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 764 AVKTAETG 771
>gi|397135944|gb|AFO11467.1| RNA polymerase I, partial [Sugiyamaella smithiae]
Length = 868
Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ SL + NN+K MVV+GSKGS INISQ++ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDNAGRSAELSLKDLNNVKQMVVSGSKGSFINISQMMACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|301090036|ref|XP_002895253.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
gi|262101000|gb|EEY59052.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
Length = 1858
Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 94/125 (75%), Positives = 105/125 (84%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FE VN +LN ARD+ G A+ SL E NN+KA V +GSKGS INISQ+IACVGQQN
Sbjct: 760 MVESFEGLVNIVLNTARDQAGREAQGSLDETNNIKATVTSGSKGSFINISQIIACVGQQN 819
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GF RTLPH+ KDD GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 820 VEGKRIPYGFNHRTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLIDTAV 879
Query: 124 KTAET 128
KTAET
Sbjct: 880 KTAET 884
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 70/86 (81%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFL 196
GEM G + AQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRLKEI+NI+K + PSL +FL
Sbjct: 1124 GEMAGVVGAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIMNIAKDVRTPSLRIFL 1183
Query: 197 TGQAARDAEKAKNVLCRLEHTTLRKV 222
T A DA+KAK + +LE+TTL V
Sbjct: 1184 TPDCAHDADKAKFIQSQLEYTTLADV 1209
>gi|194460298|gb|ACF71824.1| RNA polymerase II [Euglossa amazonica]
Length = 259
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 94/97 (96%), Positives = 96/97 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL 99
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL 259
>gi|397135952|gb|AFO11471.1| RNA polymerase I, partial [Yarrowia lipolytica]
Length = 870
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE+ V+R+LN ARD G SA+ SL + NN+K MVVAGSKGS INISQ+ ACVGQ
Sbjct: 521 MTMRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVAGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKR+PFGF RTLPHF KDDY PES+GF+ENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QMVEGKRVPFGFADRTLPHFCKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|210075525|ref|XP_501909.2| YALI0C16566p [Yarrowia lipolytica]
gi|199425290|emb|CAG82229.2| YALI0C16566p [Yarrowia lipolytica CLIB122]
Length = 1750
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE+ V+R+LN ARD G SA+ SL + NN+K MVVAGSKGS INISQ+ ACVGQ
Sbjct: 713 MTMRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVAGSKGSFINISQMSACVGQ 772
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKR+PFGF RTLPHF KDDY PES+GF+ENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 773 QMVEGKRVPFGFADRTLPHFCKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDT 832
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 833 AVKTAETG 840
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 72/87 (82%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG +AAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K P+LTV+
Sbjct: 1064 PGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVY 1123
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L A D EKAK V +EHT+L+ V
Sbjct: 1124 LEPSVAADIEKAKVVQSAIEHTSLKNV 1150
>gi|397135963|gb|AFO11476.1| RNA polymerase I, partial [Dipodascopsis uninucleata]
Length = 871
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 108/127 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE +V+++LN ARD G SA+ SLT+ NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEQKVSKVLNTARDTAGRSAETSLTDMNNVKQMVVSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF RTLPHF KDDY PESRGF+ENSYL GLTP EFFFHAM GREG+IDT
Sbjct: 581 QIVEGKRIPFGFSYRTLPHFTKDDYSPESRGFIENSYLRGLTPQEFFFHAMVGREGIIDT 640
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 641 AVKTAET 647
>gi|397135916|gb|AFO11453.1| RNA polymerase I, partial [Babjeviella inositovora]
Length = 872
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FEN V+R+LN ARD G SA+ +L + NN+K MVV GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFENNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVCGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEG+RIPFGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGRRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|12642612|gb|AAK00310.1|AF315820_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Glaucosphaera
vacuolata]
Length = 1746
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 93/125 (74%), Positives = 108/125 (86%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FE VN++LN ARDK+G A+KSL + NN+K MV AGSKGS INISQ+ ACVGQQN
Sbjct: 698 MMESFETGVNKVLNGARDKSGSDAQKSLLKTNNIKRMVNAGSKGSFINISQICACVGQQN 757
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRI +GFR+RTLPHF+ DD GPESRGFVENSYL GLT +EFFFHAMGGREGLIDTAV
Sbjct: 758 VEGKRISYGFRRRTLPHFVLDDLGPESRGFVENSYLRGLTATEFFFHAMGGREGLIDTAV 817
Query: 124 KTAET 128
KT+ET
Sbjct: 818 KTSET 822
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 69/92 (75%), Positives = 80/92 (86%)
Query: 131 NAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAP 190
+AKC PGEM+GA+A QS+GEPATQMTLNTFHFAGVS+KNVTLGVPRLKEIIN++K K P
Sbjct: 1073 HAKCPPGEMIGAVAPQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVAKHCKTP 1132
Query: 191 SLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
SLTV+L G+AARDAE+AK V L+HTTL V
Sbjct: 1133 SLTVYLRGEAARDAERAKQVQAELQHTTLNHV 1164
>gi|57634552|gb|AAW52570.1| RNA polymerase II largest subunit [Marasmius alliaceus]
Length = 590
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE+ V R LN ARDK+G +KSL E NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 224 MTIRESFESLVERELNLARDKSGQYXQKSLKEDNNVKQMVVAGSKGSFINISQMSVCVGQ 283
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEG+RIPFGFR RTLPHF KDD+ PE+RGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 284 QSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMGGREGLIDT 343
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 344 AVKTAETG 351
>gi|83320424|gb|ABC02839.1| RNA polymerase II largest subunit, partial [Polychytrium
aggregatum]
Length = 1016
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ +FE VN+ LN ARD G SA++SL E NN+K MV AGSKGS INISQ+ CVGQ
Sbjct: 649 MTIRLSFEALVNKELNRARDMAGKSAERSLKEQNNVKQMVTAGSKGSFINISQMTGCVGQ 708
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ R+LPHF KDD+ PESRGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 709 QNVEGKRIPFGFKDRSLPHFTKDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 768
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 769 AVKTAETG 776
>gi|397135924|gb|AFO11457.1| RNA polymerase I, partial [Peterozyma toletana]
Length = 870
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 105/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE V+++LN ARD G + +L ++NN+K MV AGSKGSNINISQ+ ACVGQ
Sbjct: 519 MTLRESFEQSVSQVLNQARDDVGKATADALQDWNNVKQMVSAGSKGSNINISQMSACVGQ 578
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PESRGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 579 QIVEGKRIPFGFADRSLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDT 638
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 639 AVKTAETG 646
>gi|397135898|gb|AFO11444.1| RNA polymerase I, partial [Scheffersomyces stipitis]
Length = 872
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFSDRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|294876122|ref|XP_002767562.1| DNA-directed RNA polymerase II largest subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239869222|gb|EER00280.1| DNA-directed RNA polymerase II largest subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 1667
Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 108/127 (85%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+L+Q+FE +VN+ LN AR+ +G A SL + NN+ AMV +GSKG+ INI+Q+IACVGQQ
Sbjct: 743 SLQQSFEARVNQRLNQAREDSGRLAADSLDDKNNIIAMVDSGSKGNPINIAQIIACVGQQ 802
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIP GFR RTLPHF KDD+GPESRGFVENSYLAGLTP EFFFHAMGGREG+IDTA
Sbjct: 803 NVEGKRIPTGFRDRTLPHFTKDDFGPESRGFVENSYLAGLTPQEFFFHAMGGREGIIDTA 862
Query: 123 VKTAETA 129
KTAET
Sbjct: 863 CKTAETG 869
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 69/88 (78%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
A GE VG +AAQS+GEPATQMTLNTFHFAGV SKNVTLGVPRLKEIIN++K K PS+TV
Sbjct: 1098 AAGESVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKEIINVAKNLKTPSMTV 1157
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+L A D KAK V LEHT+L K+
Sbjct: 1158 YLHPDYASDDAKAKQVQSELEHTSLGKI 1185
>gi|308198333|ref|XP_001386996.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
gi|149388976|gb|EAZ62973.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
Length = 1739
Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 708 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 768 QIVEGKRIPFGFSDRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 72/87 (82%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG +AAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K P+LTV+
Sbjct: 1061 PGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVY 1120
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + D EKAK V +EHT+L+ V
Sbjct: 1121 LDPALSDDIEKAKVVQSAIEHTSLKNV 1147
>gi|299755292|ref|XP_001828577.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
gi|298411158|gb|EAU93247.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
Length = 1745
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 107/127 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE++V ILN ARD +G A+K L E NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 722 MTLRESFESEVEGILNKARDSSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVGQ 781
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEG+RIPFGFR RTLPHF KDD+ PE+RGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 782 QSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDT 841
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 842 AVKTAET 848
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 71/97 (73%), Gaps = 1/97 (1%)
Query: 127 ETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK 185
ET N A PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN++
Sbjct: 1066 ETKFNQSIAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAT 1125
Query: 186 KPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
K PSLT+ L + A E AKNV L T+L+ V
Sbjct: 1126 NIKTPSLTIHLQPEIAVAPELAKNVQQELAFTSLKTV 1162
>gi|397135920|gb|AFO11455.1| RNA polymerase I, partial [Nakazawaea holstii]
Length = 870
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 105/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE V+++LN ARD G + SL ++NN+K MV AGSKGSNINISQ+ ACVGQ
Sbjct: 519 MTLRESFEQNVSQVLNQARDDVGKATADSLQDWNNVKQMVSAGSKGSNINISQMSACVGQ 578
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 579 QIVEGKRIPFGFSDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 638
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 639 AVKTAETG 646
>gi|397135896|gb|AFO11443.1| RNA polymerase I, partial [Schwanniomyces etchellsii]
Length = 872
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ SL + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFSDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|397135880|gb|AFO11435.1| RNA polymerase I, partial [Lodderomyces elongisporus]
Length = 872
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ SL + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|392572014|gb|EIW65186.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1748
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 108/127 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE +V R LN ARD++G A+K+L E NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 715 MTIRESFEKRVERELNLARDQSGQYAQKNLKEDNNVKQMVVAGSKGSFINISQMSVCVGQ 774
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGFR RTLPHF KDD+ PE+RGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 775 QSVEGKRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDT 834
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 835 AVKTAET 841
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/97 (67%), Positives = 74/97 (76%), Gaps = 1/97 (1%)
Query: 127 ETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK 185
ET N A PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN++
Sbjct: 1059 ETKFNQSVAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAT 1118
Query: 186 KPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
K PSL+V+L + A+DA AKNV L T+LR V
Sbjct: 1119 NIKTPSLSVYLEPEIAKDAILAKNVQQELAFTSLRTV 1155
>gi|149235017|ref|XP_001523387.1| DNA-directed RNA polymerase II largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
gi|146452796|gb|EDK47052.1| DNA-directed RNA polymerase II largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1745
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ SL + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 702 MTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 761
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 762 QIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 821
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 822 AVKTAETG 829
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 72/87 (82%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG +AAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K P+LTV+
Sbjct: 1055 PGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVY 1114
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + A D E AK V +EHTTL+ V
Sbjct: 1115 LDPEVASDIELAKIVQSSIEHTTLKNV 1141
>gi|397135969|gb|AFO11479.1| RNA polymerase I, partial [Trigonopsis variabilis]
Length = 871
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE++V+R LN ARD G SA+ SL NN+K MV+AGSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHKVSRALNQARDTAGRSAEMSLKNDNNVKQMVIAGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PES+GF+ENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFKDRTLPHFTKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|388855841|emb|CCF50625.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Ustilago hordei]
Length = 1784
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE VNR+LN ARD G A+ SL ++N +K MVVAGSKGS INISQ+ ACVGQ
Sbjct: 723 MTLRESFEANVNRVLNQARDDVGNHAEASLPDFNAVKQMVVAGSKGSFINISQMSACVGQ 782
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGFR R+LPHF KDD+ PESRGFVENSYL GLT EFFFHAM GREGLIDT
Sbjct: 783 QSVEGKRIPFGFRHRSLPHFTKDDFTPESRGFVENSYLRGLTAQEFFFHAMAGREGLIDT 842
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 843 AVKTAET 849
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN ++ K PS+TV+
Sbjct: 1073 PGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVY 1132
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
LT Q ++ E AK + L HTTL+ V
Sbjct: 1133 LTEQYSQSQEAAKVIQTALAHTTLQTV 1159
>gi|309755528|gb|ADO86598.1| RNA polymerase II [Agmina hamata]
Length = 241
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/97 (95%), Positives = 96/97 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 145 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 204
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL 99
NVEG+RIPFGFRKRTLPHFIKDDYGPESRGFVENSYL
Sbjct: 205 NVEGRRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL 241
>gi|397135934|gb|AFO11462.1| RNA polymerase I, partial [Candida petrohuensis]
Length = 868
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ SL E NN+K MV+AGSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMSLKELNNVKQMVIAGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ R+LPHF KDD+ PES+GF+ENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFQDRSLPHFTKDDHSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|397135938|gb|AFO11464.1| RNA polymerase I, partial [Candida tepae]
Length = 872
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ SL E NN+K MV+AGSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMSLKELNNVKQMVIAGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ R+LPHF KDD+ PES+GF+ENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFQDRSLPHFTKDDHSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|197723718|gb|ACH72769.1| RNA polymerase II largest subunit [Kabatana sp. JI-2008]
Length = 909
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
L +K TFE+++N LN ARD +G SA++SL NN+K MV+AGSKGS INISQV ACVGQ
Sbjct: 618 LTMKSTFESKINLALNRARDVSGRSAQESLAVSNNVKQMVLAGSKGSFINISQVTACVGQ 677
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEG+RIPF FR RTLPHF K DYGPESRGFVENS+L+GLTP EF+FH MGGREGLIDT
Sbjct: 678 QNVEGQRIPFAFRDRTLPHFSKFDYGPESRGFVENSFLSGLTPEEFYFHTMGGREGLIDT 737
Query: 122 AVKTAETA 129
A+KTAET
Sbjct: 738 AIKTAETG 745
>gi|448082723|ref|XP_004195204.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
gi|359376626|emb|CCE87208.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
Length = 1758
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 713 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 772
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 773 QIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 832
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 833 AVKTAETG 840
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 73/87 (83%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG +AAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K P+LTV+
Sbjct: 1066 PGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVY 1125
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + A D EKAK V +EHTTL+ V
Sbjct: 1126 LQKEIAADIEKAKVVQSAIEHTTLKNV 1152
>gi|397135894|gb|AFO11442.1| RNA polymerase I, partial [Schwanniomyces occidentalis]
Length = 872
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|448087303|ref|XP_004196296.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
gi|359377718|emb|CCE86101.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
Length = 1772
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 713 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 772
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 773 QIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 832
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 833 AVKTAETG 840
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 73/87 (83%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG +AAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K P+LTV+
Sbjct: 1066 PGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVY 1125
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + A D EKAK V +EHTTL+ V
Sbjct: 1126 LQKEIAADIEKAKVVQSAIEHTTLKNV 1152
>gi|259016106|gb|ACV89333.1| RNA polymerase II 215kD subunit [Ametastegia equiseti]
Length = 285
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/96 (96%), Positives = 95/96 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 183 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 242
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY 98
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY
Sbjct: 243 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY 278
>gi|120561205|gb|ABM26988.1| RNA polymerase II largest subunit, partial [Neolecta vitellina]
Length = 997
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L++TFE+QV + LN+ARD+ G SA+K L E NN+K MV AGSKGS INISQ+ ACVGQ
Sbjct: 628 MTLRETFESQVRQALNNARDEAGRSAEKGLKESNNVKQMVSAGSKGSFINISQMSACVGQ 687
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEG+RI FGF+ RTLPHF++DDY PESRGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 688 QAVEGQRIAFGFKFRTLPHFVRDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDT 747
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 748 AVKTAETG 755
>gi|120561207|gb|ABM26989.1| RNA polymerase II largest subunit, partial [Hydnum repandum]
Length = 1010
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE++VN LN RD TG A+KSL NN+K MVVAGSKGS INISQ+ ACVGQ
Sbjct: 637 MTIRESFESEVNAELNICRDDTGRHAEKSLKNDNNVKQMVVAGSKGSFINISQMSACVGQ 696
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 697 QSVEGKRIPFGFKHRTLPHFAKDDYSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDT 756
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 757 AVKTAETG 764
>gi|443918878|gb|ELU39223.1| DNA-directed RNA polymerase II largest subunit [Rhizoctonia solani
AG-1 IA]
Length = 1531
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE+ VNR LN ARDKTG A+ SL NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 603 MTIRESFESHVNRELNMARDKTGKDAQDSLKNDNNVKQMVVAGSKGSFINISQMSGCVGQ 662
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY ESRGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 663 QSVEGKRIPFGFKHRTLPHFNKDDYCAESRGFVENSYLRGLTPQEFFFHAMAGREGLIDT 722
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 723 AVKTAET 729
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/98 (62%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + ET NA PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLK
Sbjct: 940 DWIIGEVETKFNASIVNPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLK 999
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEH 216
EIIN++ K PSLTV+L + A KAK + L H
Sbjct: 1000 EIINVATNIKTPSLTVYLQSEYASSKHKAKTIQTELAH 1037
>gi|393219057|gb|EJD04545.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Fomitiporia mediterranea MF3/22]
Length = 1782
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 108/127 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE++V R LN ARD +G A+K+L E NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 752 MTIRESFESRVERELNLARDHSGQYAQKNLKEDNNVKQMVVAGSKGSFINISQMSVCVGQ 811
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGFR RTLPHF KDD+ PE+RGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 812 QSVEGKRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDT 871
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 872 AVKTAET 878
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 77/105 (73%), Gaps = 1/105 (0%)
Query: 119 IDTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRL 177
D + ET N A PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRL
Sbjct: 1088 FDWVLGEVETKFNQSMAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRL 1147
Query: 178 KEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
KEIIN+++K K PSLTV+L + A +AK+V L +T+LR V
Sbjct: 1148 KEIINVAEKIKTPSLTVYLEPEIAAVDTRAKSVQTELAYTSLRTV 1192
>gi|397135928|gb|AFO11459.1| RNA polymerase I, partial [Nadsonia fulvescens]
Length = 872
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ SL + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIP+GF RTLPHF KDDY PES+GF+ENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPYGFSDRTLPHFTKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|336378579|gb|EGO19737.1| DNA-directed RNA polymerase II, subunit 1 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1744
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 107/127 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE++V R LN ARD G A+KSL E NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 719 MTIRESFESKVQRELNLARDDCGQYAQKSLKEDNNVKQMVVAGSKGSFINISQMSVCVGQ 778
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEG+RIPFGFR RTLPHF KDD+ PE+RGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 779 QSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDT 838
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 839 AVKTAET 845
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 68/89 (76%), Gaps = 2/89 (2%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN++ K PSL+V+
Sbjct: 1073 PGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLSVY 1132
Query: 196 LTGQAARDAEK--AKNVLCRLEHTTLRKV 222
L A + AKNV L +T+LR V
Sbjct: 1133 LESDIAEEVSGMLAKNVQQELAYTSLRTV 1161
>gi|397135973|gb|AFO11481.1| RNA polymerase I, partial [Candida caseinolytica]
Length = 872
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE++V++ LN ARD TG SA+ SL + NN+K MV AGSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHKVSQTLNQARDTTGRSAEMSLKDTNNVKQMVTAGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ R+LPHF KDDY PES+GF+ENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFKDRSLPHFTKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|397135902|gb|AFO11446.1| RNA polymerase I, partial [Millerozyma farinosa]
Length = 872
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|120561229|gb|ABM27000.1| RNA polymerase II largest subunit, partial [Blastocladiella
emersonii]
Length = 1005
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/128 (77%), Positives = 110/128 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
L L++TFE QVNR+LN A + GG+A KS +NN+K MVVAGSKGSNINISQ+ ACVGQ
Sbjct: 633 LTLRETFEAQVNRLLNGAVNAAGGAAAKSFKVHNNVKHMVVAGSKGSNINISQMSACVGQ 692
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ R+LPHF+KDDY PESRGFVENSYL GL P EFFFHAMGGREGLIDT
Sbjct: 693 QNVEGKRIPFGFQYRSLPHFVKDDYSPESRGFVENSYLRGLNPQEFFFHAMGGREGLIDT 752
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 753 AVKTAETG 760
>gi|402218945|gb|EJT99020.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731
SS1]
Length = 1770
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE VN ILN RDK+G SA++SL NN+K MV AGSKGS INISQ+ A VGQ
Sbjct: 718 MTIRESFEASVNGILNQVRDKSGKSAQQSLKRDNNVKTMVTAGSKGSFINISQMSAMVGQ 777
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEG+RIPFGF+ RTLPHF KDD+ PESRGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 778 QNVEGQRIPFGFKHRTLPHFTKDDFSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDT 837
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 838 AVKTAET 844
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 66/91 (72%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ GEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN++ K P
Sbjct: 1070 ARAHAGEMCGVLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATHLKTPR 1129
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
L V+L A E +K VL L H TLR +
Sbjct: 1130 LKVYLDPNVAISPEASKAVLTELAHATLRTI 1160
>gi|120564951|gb|ABM27003.1| RNA polymerase II largest subunit, partial [Chytriomyces hyalinus]
Length = 1003
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE + LN ARD G SA+KSL+E+NN + MV+AGSKGS++NISQ+ ACVGQ
Sbjct: 633 MTIRETFEADIKSELNRARDSAGKSAEKSLSEHNNARQMVIAGSKGSSVNISQMAACVGQ 692
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEG RIPFGF+ R+LPHF KDD+ PE+RGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 693 QSVEGNRIPFGFKNRSLPHFTKDDHSPEARGFVENSYLRGLTPQEFFFHAMGGREGLIDT 752
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 753 AVKTAETG 760
>gi|57472114|gb|AAW51135.1| RNA polymerase II largest subunit [Calostoma cinnabarinum]
Length = 994
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FEN V R LN ARD++G A+K+L E NN+K MV AGSKGS INISQ+ CVGQ
Sbjct: 628 MTIRESFENMVERELNRARDESGQYAQKNLKEDNNVKQMVTAGSKGSYINISQMSVCVGQ 687
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGFR RTLPHF KDD+ PE+RGFVENSYL GLTP EFFFHAMGG EGLIDT
Sbjct: 688 QSVEGKRIPFGFRHRTLPHFNKDDFSPEARGFVENSYLRGLTPQEFFFHAMGGXEGLIDT 747
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 748 AVKTAETG 755
>gi|120561233|gb|ABM27002.1| RNA polymerase II largest subunit, partial [Entophlyctis
confervae-glomeratae]
Length = 1013
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 109/128 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
L++++TFE+ + + LN ARD G SA+ +L E+NN+K MVVAGSKGS IN++Q+ ACVGQ
Sbjct: 641 LSVRETFESYITKELNTARDGAGKSAQMTLKEFNNVKQMVVAGSKGSYINVAQMSACVGQ 700
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEG RIPFGF+ R+LPHF KDD+ PE+RGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 701 QNVEGSRIPFGFKYRSLPHFTKDDHTPEARGFVENSYLRGLTPQEFFFHAMGGREGLIDT 760
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 761 AVKTAETG 768
>gi|336364350|gb|EGN92710.1| hypothetical protein SERLA73DRAFT_98944 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1741
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 107/127 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE++V R LN ARD G A+KSL E NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 716 MTIRESFESKVQRELNLARDDCGQYAQKSLKEDNNVKQMVVAGSKGSFINISQMSVCVGQ 775
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEG+RIPFGFR RTLPHF KDD+ PE+RGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 776 QSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDT 835
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 836 AVKTAET 842
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 68/89 (76%), Gaps = 2/89 (2%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN++ K PSL+V+
Sbjct: 1070 PGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLSVY 1129
Query: 196 LTGQAARDAEK--AKNVLCRLEHTTLRKV 222
L A + AKNV L +T+LR V
Sbjct: 1130 LESDIAEEVSGMLAKNVQQELAYTSLRTV 1158
>gi|326431524|gb|EGD77094.1| polymerase II polypeptide A [Salpingoeca sp. ATCC 50818]
Length = 1834
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/125 (72%), Positives = 106/125 (84%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
++QTFE +VN+ LN KTGG+ +K+L+E+NN KAM AGSKGS INISQ+IACV QQN
Sbjct: 744 IRQTFEAKVNKNLNQVIKKTGGAVQKALSEHNNFKAMSTAGSKGSEINISQIIACVSQQN 803
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR R+LPHF+KDDYGP + GFV +SY+ GL P EFFFHAMGGREGLIDTAV
Sbjct: 804 VEGKRIPFGFRHRSLPHFVKDDYGPHACGFVFSSYIQGLEPHEFFFHAMGGREGLIDTAV 863
Query: 124 KTAET 128
KTAET
Sbjct: 864 KTAET 868
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 67/92 (72%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
++ P EMVG LAAQ LGEP TQMTLNTFH AG S+KNVTLGVPRLKEIIN+S+ PK PS
Sbjct: 1089 SQAQPAEMVGPLAAQCLGEPTTQMTLNTFHQAGYSAKNVTLGVPRLKEIINVSRNPKTPS 1148
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVL 223
+ +FL QA+ + A L LE+T L V+
Sbjct: 1149 MLLFLDEQASDNETLALRCLYDLEYTPLSAVV 1180
>gi|329132889|gb|AEB78335.1| Rpb1, partial [Jakoba libera]
Length = 1040
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
L L ++FE VN LN ARDK G +A +SL+E NN K MV AGSKG+ +NISQVIACVGQ
Sbjct: 629 LTLLESFEAVVNDKLNQARDKAGNAALESLSERNNFKNMVTAGSKGNELNISQVIACVGQ 688
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEG+RIPFGFR RTLPHF +++YGPES+GFV NSYL+GLTP EFFFH+MGGREG+IDT
Sbjct: 689 QNVEGRRIPFGFRNRTLPHFRQENYGPESKGFVSNSYLSGLTPQEFFFHSMGGREGIIDT 748
Query: 122 AVKTAETA 129
AVKT+ET
Sbjct: 749 AVKTSETG 756
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 38/44 (86%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVP 175
A PGE VG +AAQS+GEPATQMTLNTFHFAGVS+KNVT GVP
Sbjct: 996 ALITPGECVGVIAAQSVGEPATQMTLNTFHFAGVSAKNVTXGVP 1039
>gi|449550549|gb|EMD41513.1| hypothetical protein CERSUDRAFT_110068 [Ceriporiopsis subvermispora
B]
Length = 1749
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 108/127 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE++V R LN ARD++G A+KSL E NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 719 MTIRESFESKVERELNLARDQSGQYAQKSLKEDNNVKQMVVAGSKGSFINISQMSVCVGQ 778
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEG+RIPFGFR R+LPHF KDD+ PESRGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 779 QIVEGRRIPFGFRHRSLPHFTKDDFSPESRGFVENSYLRGLTPHEFFFHAMAGREGLIDT 838
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 839 AVKTAET 845
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN++ K PSL+V+
Sbjct: 1073 PGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLSVY 1132
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L Q A+DA AKNV L T+LR V
Sbjct: 1133 LEPQIAKDAVLAKNVQQELAFTSLRTV 1159
>gi|397135864|gb|AFO11427.1| RNA polymerase I, partial [Kodamaea ohmeri]
Length = 870
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+RILN ARD G SA+ +L + NN+K MV +GSKGS INISQ+ ACVGQ
Sbjct: 519 MTLRESFEHNVSRILNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 578
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 579 QIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 638
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 639 AVKTAETG 646
>gi|397135878|gb|AFO11434.1| RNA polymerase I, partial [Wickerhamia fluorescens]
Length = 872
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFSDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|83320454|gb|ABC02854.1| RNA polymerase II largest subunit, partial [Spiromyces aspiralis]
Length = 1022
Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/127 (72%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++FEN+VN+ LN ARD+ G ++ L E NN++ MVVAGSKGS IN+SQ+ A VGQ
Sbjct: 655 MTYRESFENRVNKELNRARDQAGKLVQQRLKESNNVRQMVVAGSKGSYINVSQMTAAVGQ 714
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGFR RTLPHF KDDY P S+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 715 QNVEGKRIPFGFRYRTLPHFAKDDYSPASKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 774
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 775 AVKTAET 781
>gi|395326417|gb|EJF58827.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Dichomitus squalens LYAD-421 SS1]
Length = 1749
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE +V R LN ARD +G A+K L E NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 716 MTIRESFEKKVERELNLARDHSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVGQ 775
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGFR RTLPHF KDD+ PE+RGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 776 QSVEGKRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDT 835
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 836 AVKTAET 842
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/97 (68%), Positives = 73/97 (75%), Gaps = 1/97 (1%)
Query: 127 ETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK 185
ET N A PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN++
Sbjct: 1060 ETKFNQAVAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAT 1119
Query: 186 KPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
K PSL V+L + ARDA AKNV L T+LR V
Sbjct: 1120 NIKTPSLNVYLEPEFARDALLAKNVQQELAFTSLRTV 1156
>gi|397135852|gb|AFO11421.1| RNA polymerase I, partial [Hanseniaspora valbyensis]
Length = 871
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G SA+ +L NN+K MV +GSKGS INI+Q+ ACVGQ
Sbjct: 521 MTLRESFEDNVVRFLNEARDKAGRSAEVNLKSLNNVKQMVSSGSKGSFINIAQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 581 QSVEGKRIPFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|397135940|gb|AFO11465.1| RNA polymerase I, partial [Spencermartinsiella europaea]
Length = 868
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ SL E NN+K MVVAGSKGS INIS + ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDNAGRSAEMSLKELNNVKQMVVAGSKGSFINISLMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|389750938|gb|EIM92011.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Stereum hirsutum FP-91666 SS1]
Length = 1703
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/127 (72%), Positives = 108/127 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE++V R LN ARD +G A+K+L E NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 720 MTIRESFESKVERELNLARDDSGKYAQKNLKEDNNVKQMVVAGSKGSFINISQMSVCVGQ 779
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEG+RIPFGFR RTLPHF KDD+ PE+RGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 780 QSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDT 839
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 840 AVKTAET 846
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 119 IDTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRL 177
D + ET N PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRL
Sbjct: 1056 FDWVLGEVETKFNMSVVNPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRL 1115
Query: 178 KEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
KEIIN++ K PSLTV+L + A + +AK + L +T+LR V
Sbjct: 1116 KEIINVATNIKTPSLTVYLQPEFAAQSSQAKTIQQELAYTSLRTV 1160
>gi|397135914|gb|AFO11452.1| RNA polymerase I, partial [Cephaloascus fragrans]
Length = 871
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 520 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 579
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 580 QIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 639
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 640 AVKTAETG 647
>gi|397135872|gb|AFO11431.1| RNA polymerase I, partial [Metschnikowia bicuspidata]
Length = 872
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+RILN ARD G SA+ +L + NN+K MV +GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRILNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFGDRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|294654840|ref|XP_002770038.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
gi|199429189|emb|CAR65414.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
Length = 1749
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 713 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 772
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 773 QIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 832
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 833 AVKTAETG 840
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 74/87 (85%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG +AAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K P+LTV+
Sbjct: 1066 PGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVY 1125
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L ++A D EKAK V +EHTTL+ V
Sbjct: 1126 LEKESAADIEKAKIVQSAIEHTTLKNV 1152
>gi|403417006|emb|CCM03706.1| predicted protein [Fibroporia radiculosa]
Length = 1621
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/127 (72%), Positives = 108/127 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE++V R LN ARD+ G A+K+L E NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 571 MTIRESFESRVERELNLARDQNGQYAQKNLKEDNNVKQMVVAGSKGSFINISQMSVCVGQ 630
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEG+RIP+GFR RTLPHF KDD+GPE+RGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 631 QIVEGRRIPYGFRHRTLPHFTKDDFGPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDT 690
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 691 AVKTAET 697
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 69/87 (79%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN++ K PSL+++
Sbjct: 925 PGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLSIY 984
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + A+D A +V L +T+LR V
Sbjct: 985 LDPEIAKDQISANSVQQELAYTSLRTV 1011
>gi|397135892|gb|AFO11441.1| RNA polymerase I, partial [Debaryomyces hansenii]
Length = 872
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|397135868|gb|AFO11429.1| RNA polymerase I, partial [Clavispora lusitaniae]
Length = 872
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MV +GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|397135904|gb|AFO11447.1| RNA polymerase I, partial [Meyerozyma guilliermondii]
Length = 872
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|397135822|gb|AFO11406.1| RNA polymerase I, partial [Ascoidea rubescens]
Length = 872
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE++V+R+LN ARD G A+ +L E NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFESKVSRVLNQARDDAGHCAQMNLKELNNVKQMVVSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF RTLPHF KDD+ PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFADRTLPHFTKDDFSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|397135922|gb|AFO11456.1| RNA polymerase I, partial [Pachysolen tannophilus]
Length = 870
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 104/128 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE V+++LN ARD G + +L + NN+K MV AGSKGSNINISQ+ ACVGQ
Sbjct: 519 MTLRESFEQNVSQVLNQARDDVGKATADALKDLNNVKQMVSAGSKGSNINISQMSACVGQ 578
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PESRGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 579 QIVEGKRIPFGFSDRSLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDT 638
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 639 AVKTAETG 646
>gi|260943858|ref|XP_002616227.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
gi|238849876|gb|EEQ39340.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
Length = 1402
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MV +GSKGS INISQ+ ACVGQ
Sbjct: 667 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 726
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 727 QIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 786
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 787 AVKTAETG 794
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 73/87 (83%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG +AAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K P+LTV+
Sbjct: 1020 PGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVY 1079
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + A D EKAK V +EHTTL+ V
Sbjct: 1080 LDPEIASDIEKAKVVQSAIEHTTLKNV 1106
>gi|390603892|gb|EIN13283.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Punctularia strigosozonata HHB-11173 SS5]
Length = 1729
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/127 (72%), Positives = 107/127 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE++V R LN ARD +G A+K L E NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 720 MTIRESFESKVERELNLARDDSGQYAQKHLKEDNNVKQMVVAGSKGSYINISQMSVCVGQ 779
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEG+RIPFGFR RTLPHF KDD+ PE+RGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 780 QSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPHEFFFHAMAGREGLIDT 839
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 840 AVKTAET 846
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/97 (68%), Positives = 74/97 (76%), Gaps = 1/97 (1%)
Query: 127 ETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK 185
ET N A PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN++
Sbjct: 1064 ETKFNQSVAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAT 1123
Query: 186 KPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
K PSLTV+L + +DA AKNV L +TTLR V
Sbjct: 1124 NIKTPSLTVYLVPELQKDAMLAKNVQQELAYTTLRTV 1160
>gi|393247601|gb|EJD55108.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Auricularia delicata TFB-10046 SS5]
Length = 1775
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE +V R LN ARD TG SA+KSL + NN+K MV AGSKGS INISQ+ VGQ
Sbjct: 716 MTIRETFEREVERELNQARDDTGQSAQKSLKDDNNVKQMVTAGSKGSFINISQMSVFVGQ 775
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDD+ PE+RGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 776 QSVEGKRIPFGFKHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDT 835
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 836 AVKTAET 842
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 69/87 (79%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN++ K PS TV+
Sbjct: 1070 PGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAANIKTPSHTVY 1129
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
LT + A D +AK V L +TTLR V
Sbjct: 1130 LTPEVAADPNRAKTVQTDLAYTTLRTV 1156
>gi|397135930|gb|AFO11460.1| RNA polymerase I, partial [Zygoascus hellenicus]
Length = 871
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ SL + NN+K MV +GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAETSLKDSNNVKQMVTSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|238880428|gb|EEQ44066.1| DNA-directed RNA polymerase II largest subunit [Candida albicans
WO-1]
Length = 1742
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/127 (72%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ SL + NN+K MV +GSKGS INISQ+ ACVGQ
Sbjct: 708 MTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 768 QIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 827
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 828 AVKTAET 834
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 73/87 (83%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG +AAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K P++TVF
Sbjct: 1061 PGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTVF 1120
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + A D EKAK V +EHTTL+ V
Sbjct: 1121 LDPEVASDIEKAKIVQSAIEHTTLKNV 1147
>gi|426201955|gb|EKV51878.1| hypothetical protein AGABI2DRAFT_215454, partial [Agaricus bisporus
var. bisporus H97]
Length = 1800
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE+ V R LN ARD +G A+K L E NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 713 MTIRESFESMVERQLNLARDTSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVGQ 772
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEG+RIPFGFR RTLPHF KDD+ PESRGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 773 QSVEGRRIPFGFRHRTLPHFTKDDFTPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDT 832
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 833 AVKTAETG 840
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 68/87 (78%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEM G L+AQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN++ K PSLTV+
Sbjct: 1067 PGEMCGTLSAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLTVY 1126
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + + AKNV L +T+LR V
Sbjct: 1127 LEPEISVSPTLAKNVQQELAYTSLRTV 1153
>gi|409082995|gb|EKM83352.1| hypothetical protein AGABI1DRAFT_65857 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1785
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE+ V R LN ARD +G A+K L E NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 713 MTIRESFESMVERQLNLARDTSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVGQ 772
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEG+RIPFGFR RTLPHF KDD+ PESRGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 773 QSVEGRRIPFGFRHRTLPHFTKDDFTPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDT 832
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 833 AVKTAETG 840
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 68/87 (78%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEM G L+AQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN++ K PSLTV+
Sbjct: 1067 PGEMCGTLSAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLTVY 1126
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + + AKNV L +T+LR V
Sbjct: 1127 LEPEISVSPTLAKNVQQELAYTSLRTV 1153
>gi|448524734|ref|XP_003869005.1| Rpo21 protein [Candida orthopsilosis Co 90-125]
gi|380353358|emb|CCG22868.1| Rpo21 protein [Candida orthopsilosis]
Length = 1732
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ SL + NN+K MV +GSKGS INISQ+ ACVGQ
Sbjct: 708 MTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 768 QIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 72/87 (82%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG +AAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K P+LTV+
Sbjct: 1061 PGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVY 1120
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + A D E AK V +EHTTL+ V
Sbjct: 1121 LDPEVASDIELAKIVQSSIEHTTLKNV 1147
>gi|354545641|emb|CCE42368.1| hypothetical protein CPAR2_200110 [Candida parapsilosis]
Length = 1746
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ SL + NN+K MV +GSKGS INISQ+ ACVGQ
Sbjct: 708 MTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 768 QIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 72/87 (82%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG +AAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K P+LTV+
Sbjct: 1061 PGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVY 1120
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + A D E AK V +EHTTL+ V
Sbjct: 1121 LDPEVASDIELAKIVQSSIEHTTLKNV 1147
>gi|397135971|gb|AFO11480.1| RNA polymerase I, partial [Botryozyma nematodophila]
Length = 872
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE++V++ LN ARD G SA+ SL + NN+K MV+AGSKGS INISQ+ ACVGQ
Sbjct: 521 MTVRESFEHKVSQTLNQARDVAGRSAEISLKDSNNVKQMVIAGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PESRGF+ENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFKYRTLPHFTKDDYSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|213404374|ref|XP_002172959.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
gi|212001006|gb|EEB06666.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
Length = 1748
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L++TFE +V+RILN ARD G SA+ SL + NN+K MV +GSKGS INISQ+ ACVGQ
Sbjct: 714 MTLRETFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVASGSKGSFINISQMSACVGQ 773
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDD PESRGF+ENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 774 QIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDT 833
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 834 AVKTAETG 841
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 74/87 (85%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K PSLT++
Sbjct: 1063 PGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIY 1122
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + A + + AKNV ++EHTTL+ V
Sbjct: 1123 LLPEIASNMDLAKNVQTQIEHTTLKTV 1149
>gi|390135418|gb|AFL56691.1| RNA polymerase I, partial [Candida sp. NCAIM Y.01949]
Length = 586
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ SL E NN+K MV+AGSKGS INIS + ACVGQ
Sbjct: 245 MTLRESFEHNVSRVLNQARDTAGRSAEMSLKELNNVKQMVIAGSKGSFINISLMSACVGQ 304
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 305 QIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 364
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 365 AVKTAETG 372
>gi|19112465|ref|NP_595673.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe
972h-]
gi|548817|sp|P36594.1|RPB1_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|256599715|pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599727|pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|5055|emb|CAA39916.1| RNA polymerase II large subunit [Schizosaccharomyces pombe]
gi|6018696|emb|CAB57941.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe]
Length = 1752
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE +V+RILN ARD G SA+ SL + NN+K MV AGSKGS INISQ+ ACVGQ
Sbjct: 714 MTLRESFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQ 773
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDD PESRGF+ENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 774 QIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDT 833
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 834 AVKTAETG 841
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 74/91 (81%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A +PGEMVG LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K PS
Sbjct: 1059 AVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPS 1118
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LT++L A + + AKNV ++EHTTL V
Sbjct: 1119 LTIYLMPWIAANMDLAKNVQTQIEHTTLSTV 1149
>gi|68473217|ref|XP_719414.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
gi|46441230|gb|EAL00529.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
Length = 1728
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ SL + NN+K MV +GSKGS INISQ+ ACVGQ
Sbjct: 708 MTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 768 QIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 73/87 (83%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG +AAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K P++TVF
Sbjct: 1061 PGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTVF 1120
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + A D EKAK V +EHTTL+ V
Sbjct: 1121 LDPEVASDIEKAKIVQSAIEHTTLKNV 1147
>gi|397135884|gb|AFO11437.1| RNA polymerase I, partial [Candida multigemmis]
Length = 872
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+RILN ARD G +A+ +L + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRILNQARDTAGRTAEVNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFSDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|397135977|gb|AFO11483.1| RNA polymerase I, partial [Schizosaccharomyces pombe]
Length = 868
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE +V+RILN ARD G SA+ SL + NN+K MV AGSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDD PESRGF+ENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|83320436|gb|ABC02845.1| RNA polymerase II largest subunit, partial [Entomophthora muscae]
Length = 1007
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
L +++ FE++VN+ LN ARD G A++SL EYNN+K MVV+GSKGS +NISQ+ ACVGQ
Sbjct: 638 LTVREAFESRVNQALNKARDDAGKMAERSLPEYNNIKQMVVSGSKGSFVNISQMAACVGQ 697
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVE RIPFGF+ RTLPHF K D GP SRGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 698 QNVESARIPFGFQNRTLPHFTKYDQGPVSRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 757
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 758 AVKTAET 764
>gi|120561215|gb|ABM26993.1| RNA polymerase II largest subunit, partial [Furculomyces
boomerangus]
Length = 1024
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ LK+TFE++VN LN ARD+ G + + L E NN++ MVV+GSKGS IN+SQ+ A VGQ
Sbjct: 652 MTLKETFESKVNGELNRARDQAGKTVQNRLKECNNVRRMVVSGSKGSYINVSQMTASVGQ 711
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ RTLPHF KDDY P+SRGFVENSYL GLTP EF+FHAMGGREGLIDT
Sbjct: 712 QNVEGKRIPFGFKNRTLPHFSKDDYSPQSRGFVENSYLRGLTPQEFYFHAMGGREGLIDT 771
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 772 AVKTAETG 779
>gi|241959608|ref|XP_002422523.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
gi|223645868|emb|CAX40531.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
Length = 1735
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ SL + NN+K MV +GSKGS INISQ+ ACVGQ
Sbjct: 708 MTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 768 QIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 73/87 (83%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG +AAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K P++TV+
Sbjct: 1061 PGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTVY 1120
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + A D EKAK V +EHTTL+ V
Sbjct: 1121 LDPEVASDIEKAKIVQSAIEHTTLKNV 1147
>gi|397135850|gb|AFO11420.1| RNA polymerase I, partial [Saccharomycodes ludwigii]
Length = 871
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G SA+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 521 MTLRESFEDNVVRFLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 581 QSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|78190641|gb|ABB29642.1| DNA-directed RNA polymerase II largest subunit [Suberites fuscus]
Length = 363
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 89/106 (83%), Positives = 99/106 (93%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILN+ARDKTG SA++SL+++NN K MV AGSKGS INISQVIACVGQQ
Sbjct: 258 TLRQTFENQVNRILNEARDKTGSSAQRSLSDFNNFKIMVTAGSKGSKINISQVIACVGQQ 317
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 108
NVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EF+
Sbjct: 318 NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPNEFY 363
>gi|170100352|ref|XP_001881394.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644073|gb|EDR08324.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1742
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE+ V R LN ARD +G A+K L E NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 713 MTIRESFESLVERQLNLARDTSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVGQ 772
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEG+RIPFGFR RTLPHF KDD+ PESRGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 773 QSVEGRRIPFGFRHRTLPHFTKDDFSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDT 832
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 833 AVKTAETG 840
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D + ET N PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLK
Sbjct: 1050 DWVMGEVETKFNQSVVHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLK 1109
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
EIIN++ K PSLTV L + A + AKNV L +T+LR V
Sbjct: 1110 EIINVATNIKTPSLTVHLDPEIAVSSSLAKNVQQELAYTSLRTV 1153
>gi|397135900|gb|AFO11445.1| RNA polymerase I, partial [Scheffersomyces spartinae]
Length = 872
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MV +GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFGDRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|168920044|gb|AAV54050.2| RNA polymerase II largest subunit [Boletellus projectellus]
Length = 997
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE++V R LN ARD +G A+K+L E NN+K MV AGSKGS INISQ+ CVGQ
Sbjct: 623 MTIRESFESKVERELNRARDDSGQYAQKNLKEDNNVKQMVTAGSKGSYINISQMSVCVGQ 682
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEG+RIPFGFR RTLPHF KDD+ PE+RGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 683 QSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDT 742
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 743 AVKTAETG 750
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/21 (85%), Positives = 19/21 (90%)
Query: 136 PGEMVGALAAQSLGEPATQMT 156
PGEM G LAAQS+GEPATQMT
Sbjct: 977 PGEMCGTLAAQSIGEPATQMT 997
>gi|397135848|gb|AFO11419.1| RNA polymerase I, partial [Eremothecium cymbalariae]
Length = 871
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G SA+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 521 MTLRESFEDNVVRFLNEARDKAGRSAELNLRDLNNVKQMVSAGSKGSFINIAQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 581 QSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|397135936|gb|AFO11463.1| RNA polymerase I, partial [Candida santjacobensis]
Length = 873
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 105/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE V+R+LN ARD G SA+ SL E NN+K MVVAGSKGS INIS + ACVGQ
Sbjct: 521 MTLRESFEQNVSRVLNQARDTAGRSAEMSLKELNNVKQMVVAGSKGSFINISLMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEG+RIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGRRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|397135844|gb|AFO11417.1| RNA polymerase I, partial [Lachancea thermotolerans]
Length = 871
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G SA+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 521 MTLRESFEDSVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 581 QSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|83320442|gb|ABC02848.1| RNA polymerase II largest subunit, partial [Zancudomyces culisetae]
Length = 983
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 104/128 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ K+TFEN +N LN AR+ G S + L + NN++ MVV+GSKGS IN+SQ+ A VGQ
Sbjct: 634 MTYKETFENNINFELNKARENAGKSVQAQLKDCNNVRKMVVSGSKGSYINVSQMTAAVGQ 693
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGFR RTLPHF KDDY P SRGFVENSYL+GLTP EF+FHAMGGREGLIDT
Sbjct: 694 QNVEGKRIPFGFRDRTLPHFTKDDYTPHSRGFVENSYLSGLTPQEFYFHAMGGREGLIDT 753
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 754 AVKTAETG 761
>gi|397135870|gb|AFO11430.1| RNA polymerase I, partial [Metschnikowia agaves]
Length = 872
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MV +GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|50310581|ref|XP_455310.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644446|emb|CAG98018.1| KLLA0F05071p [Kluyveromyces lactis]
Length = 1720
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G SA+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 71/87 (81%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 1119
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + A D EKAK + +EHTTL+ V
Sbjct: 1120 LDPEYAADQEKAKEIRSAIEHTTLKSV 1146
>gi|120561211|gb|ABM26991.1| RNA polymerase II largest subunit, partial [Zancudomyces culisetae]
Length = 1025
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 104/128 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ K+TFEN +N LN AR+ G S + L + NN++ MVV+GSKGS IN+SQ+ A VGQ
Sbjct: 653 MTYKETFENNINFELNKARENAGKSVQAQLKDCNNVRKMVVSGSKGSYINVSQMTAAVGQ 712
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGFR RTLPHF KDDY P SRGFVENSYL+GLTP EF+FHAMGGREGLIDT
Sbjct: 713 QNVEGKRIPFGFRDRTLPHFTKDDYTPHSRGFVENSYLSGLTPQEFYFHAMGGREGLIDT 772
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 773 AVKTAETG 780
>gi|402468610|gb|EJW03738.1| hypothetical protein EDEG_01976 [Edhazardia aedis USNM 41457]
Length = 2270
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
++L+++FE+ +N LN AR+ +G A+K L E NN+K MV+AGSKGS INISQ+ ACVGQ
Sbjct: 1123 MSLRESFESCINMSLNKARNISGNCAQKELRESNNVKQMVLAGSKGSIINISQMTACVGQ 1182
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QN+EGKRIPFGFR RTLPHF KDDYG S+GFV NSYL GLTP EF+FHAMGGREGLIDT
Sbjct: 1183 QNMEGKRIPFGFRNRTLPHFCKDDYGARSKGFVRNSYLLGLTPEEFYFHAMGGREGLIDT 1242
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 1243 AVKTAETG 1250
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFL 196
EMVG LAAQS+GEPATQMTLNTFH AGV+S VTLGVPRLKE+INI+K K PS+ +F
Sbjct: 1492 NEMVGTLAAQSVGEPATQMTLNTFHLAGVAST-VTLGVPRLKEVINIAKTLKTPSMKLFP 1550
Query: 197 TGQAARDAEKAKNVLCRLEHTTLRKV 222
T + + + AK +E+ L+ +
Sbjct: 1551 TEEYGKSMDDAKKAQILIEYAGLKDI 1576
>gi|363755924|ref|XP_003648178.1| hypothetical protein Ecym_8065 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891378|gb|AET41361.1| Hypothetical protein Ecym_8065 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1743
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G SA+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRFLNEARDKAGRSAELNLRDLNNVKQMVSAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 1119
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L A D EKAK + +EHTTL+ V
Sbjct: 1120 LNEDYAADQEKAKLIRSAIEHTTLKSV 1146
>gi|374107397|gb|AEY96305.1| FADR086Cp [Ashbya gossypii FDAG1]
Length = 1738
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G SA+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 1119
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L A D EKAK + +EHTTL+ V
Sbjct: 1120 LEESYATDQEKAKLIRSAIEHTTLKSV 1146
>gi|302307500|ref|NP_984182.2| ADR086Cp [Ashbya gossypii ATCC 10895]
gi|442570012|sp|Q75A34.2|RPB1_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|299789031|gb|AAS52006.2| ADR086Cp [Ashbya gossypii ATCC 10895]
Length = 1745
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G SA+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 1119
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L A D EKAK + +EHTTL+ V
Sbjct: 1120 LEESYATDQEKAKLIRSAIEHTTLKSV 1146
>gi|255719376|ref|XP_002555968.1| KLTH0H02046p [Lachancea thermotolerans]
gi|238941934|emb|CAR30106.1| KLTH0H02046p [Lachancea thermotolerans CBS 6340]
Length = 1740
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G SA+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDSVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 1119
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L A D EKAK + +EHTTL+ +
Sbjct: 1120 LDKDHAADQEKAKLIRSAIEHTTLKSI 1146
>gi|397135874|gb|AFO11432.1| RNA polymerase I, partial [Hyphopichia burtonii]
Length = 872
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MV +GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|91095991|gb|AAW56763.2| RNA polymerase II largest subunit [Hygrophoropsis aurantiaca]
Length = 991
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE++V R LN ARD +G A+++L E NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 625 MTIRESFESKVERELNRARDTSGRYAQENLKEDNNVKQMVVAGSKGSYINISQMSVCVGQ 684
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEG+RIPFGFR RTLPHF KDD+ PE+RGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 685 QSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDT 744
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 745 AVKTAETG 752
>gi|12642614|gb|AAK00311.1|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga
brevicollis]
Length = 1743
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 91/126 (72%), Positives = 105/126 (83%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+++TFE +VN +LND +K G SA+ SL+ +NN KAM AGSKG INISQ+IACVGQQN
Sbjct: 651 VRETFEVEVNTVLNDMVNKAGKSAQNSLSIHNNFKAMSTAGSKGGPINISQIIACVGQQN 710
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHF+KDDYGP+SRGFV NSY GL+ E FFHAMGGREGLIDTAV
Sbjct: 711 VEGKRIPFGFKYRTLPHFVKDDYGPDSRGFVFNSYFKGLSAQEMFFHAMGGREGLIDTAV 770
Query: 124 KTAETA 129
KTAET
Sbjct: 771 KTAETG 776
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 75/93 (80%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFH AGVS+KNVTLGVPRLKEIIN+SKKPK PS
Sbjct: 997 AQAQPGEMVGALAAQSLGEPATQMTLNTFHLAGVSAKNVTLGVPRLKEIINVSKKPKTPS 1056
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVLY 224
+ +F+ +D A VL +EH+TL+ +++
Sbjct: 1057 MVLFIGEDKYQDRNTAMKVLFSIEHSTLKTIIH 1089
>gi|430812931|emb|CCJ29676.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1762
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 92/127 (72%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE++V+R LN ARD G SA+ SL + NN+K MV AGSKGS INISQ+ ACVGQ
Sbjct: 712 MTLRESFESKVSRALNQARDTAGRSAQMSLKDSNNVKQMVTAGSKGSFINISQMSACVGQ 771
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIP+GF+ RTLPHF KDDY PES GF+ENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 772 QIVEGKRIPYGFKYRTLPHFTKDDYSPESGGFIENSYLRGLTPQEFFFHAMAGREGLIDT 831
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 832 AVKTAET 838
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 74/87 (85%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFH+AGVSSK++TLGVPRLKEI+N++K K PSLT++
Sbjct: 1065 PGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKSITLGVPRLKEILNVAKTIKTPSLTIY 1124
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
LT + ++D E AK V +EHTTL+ V
Sbjct: 1125 LTPEVSKDMESAKQVQTAIEHTTLKTV 1151
>gi|344303415|gb|EGW33664.1| hypothetical protein SPAPADRAFT_134208 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1748
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MV +GSKGS INISQ+ ACVGQ
Sbjct: 716 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 775
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 776 QIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 835
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 836 AVKTAETG 843
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 73/87 (83%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG +AAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K P+LTV+
Sbjct: 1069 PGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVY 1128
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + A D EKAK V +EHTTL+ V
Sbjct: 1129 LDPEIAADIEKAKVVQSAIEHTTLKNV 1155
>gi|409051067|gb|EKM60543.1| hypothetical protein PHACADRAFT_246551 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1753
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/127 (72%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE++V R LN ARD+ G A+K L E NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 719 MTIRESFESKVERELNLARDQNGQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVGQ 778
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEG+RIPFGFR RTLPHF KDD+ PE+RGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 779 QIVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDT 838
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 839 AVKTAET 845
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/97 (65%), Positives = 75/97 (77%), Gaps = 1/97 (1%)
Query: 127 ETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK 185
E+ N A PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN++
Sbjct: 1063 ESKFNQSLAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAT 1122
Query: 186 KPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
K PSL+V+L + A+DA AKNV L +T+LR V
Sbjct: 1123 NIKTPSLSVYLESKLAKDAALAKNVQQELAYTSLRTV 1159
>gi|85000327|ref|XP_954882.1| DNA-directed RNA polymerase II largest subunit [Theileria annulata
strain Ankara]
gi|65303028|emb|CAI75406.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
annulata]
Length = 1678
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 106/127 (83%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+L ++FE +VN+ LNDAR+++G SL NN+ +MV +GSKGS INISQ+IACVGQQ
Sbjct: 722 SLFESFEARVNKELNDAREQSGSVVASSLNLTNNILSMVNSGSKGSTINISQIIACVGQQ 781
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFR R+LPHFIK DYGPESRGFV NSYL+GLTP E FFHAMGGREG+IDTA
Sbjct: 782 NVEGKRIPFGFRDRSLPHFIKHDYGPESRGFVSNSYLSGLTPQEMFFHAMGGREGIIDTA 841
Query: 123 VKTAETA 129
KT+ET
Sbjct: 842 CKTSETG 848
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 70/88 (79%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGE VGA+AAQS+GEPATQMTLNTFHFAGVSSKNVTLG+PRLKE+IN+ + PSLT++
Sbjct: 1075 PGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVTNVRTPSLTIY 1134
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKVL 223
L +D E+AK + LE+T+ K++
Sbjct: 1135 LDPSINKDQERAKEMQTLLEYTSFEKIV 1162
>gi|397135840|gb|AFO11415.1| RNA polymerase I, partial [Kazachstania viticola]
Length = 871
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 521 MTLRESFEDNVVRYLNEARDKAGRLAEVNLNDSNNVKQMVSAGSKGSFINIAQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIP+GF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 581 QSVEGKRIPYGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|58395849|gb|AAW72745.1| RNA polymerase II largest subunit [Fomitiporia mediterranea]
Length = 590
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE++V R LN ARD +G A+K+L E NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 224 MTIRESFESRVERELNLARDHSGQYAQKNLKEDNNVKQMVVAGSKGSFINISQMSVCVGQ 283
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKR PFGFR RTLPHF KDD+ PE+RGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 284 QSVEGKRXPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDT 343
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 344 AVKTAETG 351
>gi|397135876|gb|AFO11433.1| RNA polymerase I, partial [Hyphopichia heimii]
Length = 872
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MV +GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|290984021|ref|XP_002674726.1| RNA polymerase II largest subunit [Naegleria gruberi]
gi|284088318|gb|EFC41982.1| RNA polymerase II largest subunit [Naegleria gruberi]
Length = 1650
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 89/127 (70%), Positives = 104/127 (81%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
++Q+FE +N LN AR+ G KKSL + N++K+MV +GSKGS +NISQ+IACVGQQ
Sbjct: 700 TVEQSFERSINSTLNAAREDAGMHVKKSLKDSNSIKSMVTSGSKGSYLNISQIIACVGQQ 759
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKR+PFGF+ RTLPHF DD+GPESRGFV NSYL GLTP EFFFH MGGREGLIDTA
Sbjct: 760 NVEGKRVPFGFKNRTLPHFSTDDHGPESRGFVANSYLRGLTPQEFFFHTMGGREGLIDTA 819
Query: 123 VKTAETA 129
VKTAET
Sbjct: 820 VKTAETG 826
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 67/92 (72%), Gaps = 2/92 (2%)
Query: 128 TACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP 187
T N PGEMVG +AAQS+GEPATQMTLNTFH AGVSSKNVTLGVPRLKE++++S+
Sbjct: 1045 TFLNGLVQPGEMVGCIAAQSIGEPATQMTLNTFHNAGVSSKNVTLGVPRLKELLDVSRNI 1104
Query: 188 KAPSLTVFLTGQAARDAEKAKNVLCRLEHTTL 219
K P LT++L D E AK V LE++ L
Sbjct: 1105 KTPGLTIYLKND--NDCEIAKMVKEELEYSNL 1134
>gi|71027119|ref|XP_763203.1| DNA-directed RNA polymerase II largest subunit [Theileria parva
strain Muguga]
gi|68350156|gb|EAN30920.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
parva]
Length = 1681
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 106/127 (83%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+L ++FE +VN+ LNDAR+++G SL NN+ +MV +GSKGS INISQ+IACVGQQ
Sbjct: 722 SLFESFEARVNKELNDAREQSGSIVASSLNLSNNILSMVNSGSKGSTINISQIIACVGQQ 781
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGFR R+LPHFIK DYGPESRGFV NSYL+GLTP E FFHAMGGREG+IDTA
Sbjct: 782 NVEGKRIPFGFRDRSLPHFIKHDYGPESRGFVSNSYLSGLTPQEMFFHAMGGREGIIDTA 841
Query: 123 VKTAETA 129
KT+ET
Sbjct: 842 CKTSETG 848
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 69/88 (78%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGE VGA+AAQS+GEPATQMTLNTFHFAGVSSKNVTLG+PRLKE+IN+ + PSLT++
Sbjct: 1075 PGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVTNVRTPSLTIY 1134
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKVL 223
L +D E+AK + LE+T K++
Sbjct: 1135 LDPSINKDQERAKEMQTLLEYTNFEKIV 1162
>gi|397135888|gb|AFO11439.1| RNA polymerase I, partial [Priceomyces haplophilus]
Length = 867
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KD+Y PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFSDRSLPHFTKDNYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|358057836|dbj|GAA96338.1| hypothetical protein E5Q_03004 [Mixia osmundae IAM 14324]
Length = 2471
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V LN ARD G SA++SL NN+K MVVAGSKGS INISQ+ ACVGQ
Sbjct: 744 MTIRETFESKVTGSLNRARDTAGQSAERSLAASNNVKQMVVAGSKGSFINISQMSACVGQ 803
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGFR R+LPHF KDD+ PE+RGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 804 QIVEGKRIPFGFRYRSLPHFTKDDHTPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDT 863
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 864 AVKTAET 870
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/104 (64%), Positives = 76/104 (73%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D V E NA PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLK
Sbjct: 1079 DWVVGEIEARFNASVVHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLK 1138
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
EIINI+ K PSLTV+L ARD ++AK+V +L H TLR +
Sbjct: 1139 EIINIADNIKTPSLTVYLQPGYARDQQRAKSVSNQLGHVTLRTI 1182
>gi|57792099|gb|AAW56766.1| RNA polymerase II largest subunit [Strobilomyces floccopus]
Length = 597
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE++V R LN ARD +G A+K+L E NN+K MV AGSKGS INISQ+ CVGQ
Sbjct: 231 MTIRESFESKVERELNRARDDSGQYAQKNLKEDNNVKQMVTAGSKGSYINISQMSVCVGQ 290
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEG+RIPFGFR RTLPHF KDD+ PE+RGFVENSYL GLTP E+FFHAM GREGLIDT
Sbjct: 291 QSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEYFFHAMAGREGLIDT 350
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 351 AVKTAETG 358
>gi|167527458|ref|XP_001748061.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773479|gb|EDQ87118.1| predicted protein [Monosiga brevicollis MX1]
Length = 1307
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/126 (71%), Positives = 105/126 (83%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+++TFE +VN +LND +K G +A+ SL+ +NN KAM AGSKG INISQ+IACVGQQN
Sbjct: 215 VRETFEVEVNTVLNDMVNKAGKAAQNSLSIHNNFKAMSTAGSKGGPINISQIIACVGQQN 274
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHF+KDDYGP+SRGFV NSY GL+ E FFHAMGGREGLIDTAV
Sbjct: 275 VEGKRIPFGFKYRTLPHFVKDDYGPDSRGFVFNSYFKGLSAQEMFFHAMGGREGLIDTAV 334
Query: 124 KTAETA 129
KTAET
Sbjct: 335 KTAETG 340
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 75/93 (80%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFH AGVS+KNVTLGVPRLKEIIN+SKKPK PS
Sbjct: 561 AQAQPGEMVGALAAQSLGEPATQMTLNTFHLAGVSAKNVTLGVPRLKEIINVSKKPKTPS 620
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVLY 224
+ +F+ +D A VL +EH+TL+ +++
Sbjct: 621 MVLFIGEDKYQDRNTAMKVLFSIEHSTLKTIIH 653
>gi|259016124|gb|ACV89342.1| RNA polymerase II 215kD subunit [Austroneurorthus brunneipennis]
Length = 282
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/95 (96%), Positives = 94/95 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 188 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 247
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS 97
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS
Sbjct: 248 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS 282
>gi|397135882|gb|AFO11436.1| RNA polymerase I, partial [Spathaspora passalidarum]
Length = 872
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MV +GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|194460448|gb|ACF71898.1| RNA polymerase II [Eufriesea mussitans]
Length = 259
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/97 (94%), Positives = 94/97 (96%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 163 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 222
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL 99
NVEGKRIPFGFRKRTLPHFIKDDYGPE GFVENSYL
Sbjct: 223 NVEGKRIPFGFRKRTLPHFIKDDYGPEXXGFVENSYL 259
>gi|78190749|gb|ABB29696.1| DNA-directed RNA polymerase II largest subunit [Aphrocallistes
vastus]
Length = 365
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/106 (83%), Positives = 100/106 (94%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFEN VN+ILN+ARD+TG SA+KSL+++NN+KAMVV+G+KGS INISQVIACVGQQ
Sbjct: 260 TLRQTFENNVNKILNNARDQTGSSAQKSLSDFNNMKAMVVSGAKGSKINISQVIACVGQQ 319
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 108
NVEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAGLTP+E F
Sbjct: 320 NVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPNEMF 365
>gi|296422783|ref|XP_002840938.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637165|emb|CAZ85129.1| unnamed protein product [Tuber melanosporum]
Length = 1025
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 102/128 (79%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN V + LN ARDK G +KSL + NN M +GSKGSNINISQ+ A VGQ
Sbjct: 221 MNIRDTFENLVQKSLNSARDKAGSDTEKSLKDSNNAIQMARSGSKGSNINISQMTAVVGQ 280
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 281 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDT 340
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 341 AVKTAETG 348
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 70/91 (76%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++K K PS
Sbjct: 444 AAVQPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKNIKTPS 503
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+ V+ + + E AK + +EHTTLR V
Sbjct: 504 MMVYQVPENTHEKETAKALRSAVEHTTLRSV 534
>gi|397135890|gb|AFO11440.1| RNA polymerase I, partial [Priceomyces castillae]
Length = 872
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KD+Y PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFADRSLPHFTKDNYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|62911675|gb|AAY21468.1| RNA polymerase II [Stenotritus sp. BND-2004]
Length = 249
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/95 (96%), Positives = 94/95 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 155 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 214
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS 97
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS
Sbjct: 215 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS 249
>gi|399218278|emb|CCF75165.1| unnamed protein product [Babesia microti strain RI]
Length = 1801
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 91/126 (72%), Positives = 108/126 (85%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+L ++FE +VN+ LN+AR+++G +SL E NN+ AMV AGSKGS+INISQ+IACVGQQ
Sbjct: 771 SLFESFEARVNKELNEAREQSGRIVAESLDEQNNILAMVNAGSKGSSINISQIIACVGQQ 830
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF R+LPHFIK DYGPESRGFV NSYL+GLTP E FFHAMGGREG+IDTA
Sbjct: 831 NVEGKRIPFGFCDRSLPHFIKHDYGPESRGFVSNSYLSGLTPQEMFFHAMGGREGIIDTA 890
Query: 123 VKTAET 128
KT+ET
Sbjct: 891 CKTSET 896
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 70/87 (80%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFL 196
GE VGA+AAQS+GEPATQMTLNTFHFAGV SKNVTLGVPRLKE+IN+ K PSLTV L
Sbjct: 1129 GECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVVTNVKTPSLTVHL 1188
Query: 197 TGQAARDAEKAKNVLCRLEHTTLRKVL 223
ARD E+AK+V +LEHTTL V+
Sbjct: 1189 EDAVARDQERAKDVQLQLEHTTLGHVV 1215
>gi|353251633|pdb|3J0K|A Chain A, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 1455
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV+AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 1119
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L A D E+AK + +EHTTL+ V
Sbjct: 1120 LEPGHAADQEQAKLIRSAIEHTTLKSV 1146
>gi|397135942|gb|AFO11466.1| RNA polymerase I, partial [Trichomonascus petasosporus]
Length = 873
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 104/128 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L++TFE ++ N ARD G SA+KSL E NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 523 MTLRETFEAHASKAFNQARDDAGKSAEKSLKELNNVKQMVVSGSKGSFINISQMSACVGQ 582
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDD+ ESRGF+ENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 583 QIVEGKRIPFGFQDRTLPHFTKDDFSGESRGFIENSYLRGLTPQEFFFHAMAGREGLIDT 642
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 643 AVKTAETG 650
>gi|120561213|gb|ABM26992.1| RNA polymerase II largest subunit, partial [Capniomyces stellatus]
Length = 1024
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 104/128 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ LK+TFE+ N LN ARD G S + L E NN++ MVV+GSKGS IN+SQ+ A VGQ
Sbjct: 652 MTLKETFESGTNLELNRARDLAGKSVQTRLKECNNVRKMVVSGSKGSYINVSQMTAAVGQ 711
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEG+RIPFGFR RTLPHF KDDY P+SRGFVENSYL GLTP EF+FHAMGGREGLIDT
Sbjct: 712 QNVEGRRIPFGFRNRTLPHFTKDDYSPQSRGFVENSYLRGLTPQEFYFHAMGGREGLIDT 771
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 772 AVKTAETG 779
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/22 (81%), Positives = 19/22 (86%)
Query: 132 AKCAPGEMVGALAAQSLGEPAT 153
A APGEMVG LAAQS+GEPAT
Sbjct: 1003 ALVAPGEMVGTLAAQSIGEPAT 1024
>gi|397135886|gb|AFO11438.1| RNA polymerase I, partial [Kurtzmaniella cleridarum]
Length = 872
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PE +GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFADRSLPHFTKDDYSPELKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|397135912|gb|AFO11451.1| RNA polymerase I, partial [Yamadazyma triangularis]
Length = 859
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQ
Sbjct: 518 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 577
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF RTLPHF KDDY PES+GFVENSYL GLTP EFFF AM GREGLIDT
Sbjct: 578 QIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFXAMAGREGLIDT 637
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 638 AVKTAETG 645
>gi|397135834|gb|AFO11412.1| RNA polymerase I, partial [Saccharomyces cerevisiae]
Length = 871
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV+AGSKGS INI+Q+ ACVGQ
Sbjct: 521 MTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 581 QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|207347072|gb|EDZ73379.1| YDL140Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1578
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV+AGSKGS INI+Q+ ACVGQ
Sbjct: 553 MTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQ 612
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 613 QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 672
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 673 AVKTAETG 680
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+
Sbjct: 905 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 964
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L A D E+AK + +EHTTL+ V
Sbjct: 965 LEPGHAADQEQAKLIRSAIEHTTLKSV 991
>gi|4398|emb|CAA26904.1| put. RNA polymerase II largest subunit [Saccharomyces cerevisiae]
Length = 1726
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV+AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 1119
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L A D E+AK + +EHTTL+ V
Sbjct: 1120 LEPGHAADQEQAKLIRSAIEHTTLKSV 1146
>gi|357380836|pdb|4A3C|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546290|pdb|4A3B|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546308|pdb|4A3D|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546325|pdb|4A3E|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546342|pdb|4A3F|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546359|pdb|4A3J|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546376|pdb|4A3K|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546392|pdb|4A3L|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546409|pdb|4A3M|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977879|pdb|4A3G|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977894|pdb|4A3I|A Chain A, Rna Polymerase Ii Binary Complex With Dna
gi|380764979|pdb|4A93|A Chain A, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
Length = 1732
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV+AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 1119
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L A D E+AK + +EHTTL+ V
Sbjct: 1120 LEPGHAADQEQAKLIRSAIEHTTLKSV 1146
>gi|401626472|gb|EJS44418.1| rpo21p [Saccharomyces arboricola H-6]
Length = 1726
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV+AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 1119
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L A D E+AK + +EHTTL+ V
Sbjct: 1120 LEPGHAADQEQAKLIRSAIEHTTLKSV 1146
>gi|6320061|ref|NP_010141.1| Rpo21p [Saccharomyces cerevisiae S288c]
gi|2507347|sp|P04050.2|RPB1_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit; AltName: Full=RNA polymerase II
subunit B220
gi|14278324|pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278335|pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278365|pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
gi|20150713|pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749616|pdb|1NIK|A Chain A, Wild Type Rna Polymerase Ii
gi|30749737|pdb|1NT9|A Chain A, Complete 12-Subunit Rna Polymerase Ii
gi|34810553|pdb|1PQV|A Chain A, Rna Polymerase Ii-Tfiis Complex
gi|46015415|pdb|1R5U|A Chain A, Rna Polymerase Ii Tfiib Complex
gi|46015780|pdb|1SFO|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965911|pdb|1R9S|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965923|pdb|1R9T|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966107|pdb|1TWA|A Chain A, Rna Polymerase Ii Complexed With Atp
gi|56966121|pdb|1TWC|A Chain A, Rna Polymerase Ii Complexed With Gtp
gi|56966131|pdb|1TWF|A Chain A, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966141|pdb|1TWG|A Chain A, Rna Polymerase Ii Complexed With Ctp
gi|56966151|pdb|1TWH|A Chain A, Rna Polymerase Ii Complexed With 2'datp
gi|58177164|pdb|1WCM|A Chain A, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679444|pdb|1Y1W|A Chain A, Complete Rna Polymerase Ii Elongation Complex
gi|61679461|pdb|1Y77|A Chain A, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679502|pdb|1Y1V|A Chain A, Refined Rna Polymerase Ii-tfiis Complex
gi|61679515|pdb|1Y1Y|A Chain A, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754243|pdb|2B63|A Chain A, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590854|pdb|2B8K|A Chain A, 12-Subunit Rna Polymerase Ii
gi|122920061|pdb|2E2H|A Chain A, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920076|pdb|2E2I|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920091|pdb|2E2J|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921030|pdb|2NVQ|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921066|pdb|2NVT|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921082|pdb|2NVX|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921097|pdb|2NVY|A Chain A, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921109|pdb|2NVZ|A Chain A, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104674|pdb|2JA5|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104689|pdb|2JA6|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104710|pdb|2JA7|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104722|pdb|2JA7|M Chain M, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104734|pdb|2JA8|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387184|pdb|2YU9|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877773|pdb|2R7Z|A Chain A, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172227|pdb|2R92|A Chain A, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172240|pdb|2R93|A Chain A, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613462|pdb|2VUM|A Chain A, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368734|pdb|3CQZ|A Chain A, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983590|pdb|3FKI|A Chain A, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781916|pdb|3GTG|A Chain A, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781929|pdb|3GTJ|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781942|pdb|3GTK|A Chain A, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781955|pdb|3GTL|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781968|pdb|3GTM|A Chain A, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781982|pdb|3GTO|A Chain A, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781995|pdb|3GTP|A Chain A, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782008|pdb|3GTQ|A Chain A, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104511|pdb|3H3V|B Chain B, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839441|pdb|3HOU|A Chain A, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839456|pdb|3HOU|M Chain M, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839471|pdb|3HOV|A Chain A, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839486|pdb|3HOW|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839501|pdb|3HOX|A Chain A, Complete Rna Polymerase Ii Elongation Complex V
gi|254839516|pdb|3HOY|A Chain A, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839531|pdb|3HOZ|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471946|pdb|3I4M|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471961|pdb|3I4N|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618765|pdb|3K1F|A Chain A, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914552|pdb|3K7A|A Chain A, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982475|pdb|3M3Y|A Chain A, Rna Polymerase Ii Elongation Complex C
gi|295982488|pdb|3M4O|A Chain A, Rna Polymerase Ii Elongation Complex B
gi|325053963|pdb|3PO2|A Chain A, Arrested Rna Polymerase Ii Elongation Complex
gi|325053978|pdb|3PO3|A Chain A, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634538|pdb|3QT1|A Chain A, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197456|pdb|3RZD|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197468|pdb|3RZO|A Chain A, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197480|pdb|3S14|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197492|pdb|3S15|A Chain A, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197504|pdb|3S16|A Chain A, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197516|pdb|3S17|A Chain A, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197528|pdb|3S1M|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197540|pdb|3S1N|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197552|pdb|3S1Q|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197564|pdb|3S1R|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197576|pdb|3S2D|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781197|pdb|3S2H|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|414145446|pdb|4BBR|A Chain A, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145459|pdb|4BBS|A Chain A, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|1419221|emb|CAA65619.1| RPB1 [Saccharomyces cerevisiae]
gi|1431217|emb|CAA98713.1| RPO21 [Saccharomyces cerevisiae]
gi|151941861|gb|EDN60217.1| RNA polymerase [Saccharomyces cerevisiae YJM789]
gi|285810894|tpg|DAA11718.1| TPA: Rpo21p [Saccharomyces cerevisiae S288c]
gi|349576938|dbj|GAA22107.1| K7_Rpo21p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300684|gb|EIW11775.1| Rpo21p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1733
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV+AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 1119
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L A D E+AK + +EHTTL+ V
Sbjct: 1120 LEPGHAADQEQAKLIRSAIEHTTLKSV 1146
>gi|302410002|ref|XP_003002835.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium
albo-atrum VaMs.102]
gi|261358868|gb|EEY21296.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium
albo-atrum VaMs.102]
Length = 1756
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN ARDK G + +KSL + NN M ++GSKGS+INISQ+ A VGQ
Sbjct: 721 MNIRETFESKVSRALNTARDKAGTTTQKSLKDLNNAVTMALSGSKGSSINISQMTALVGQ 780
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 781 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 840
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 841 AVKTAETG 848
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/116 (57%), Positives = 81/116 (69%), Gaps = 13/116 (11%)
Query: 108 FFHAMGGREGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSS 167
F H +G EG A +PGEMVG LAAQS+GEPATQMTLNTFHFAGVSS
Sbjct: 1057 FSHVLGELEG----------RWAKASISPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSS 1106
Query: 168 KNVTLGVPRLKEIINISKKPKAPSLTVFLT-GQAARDAEKAKNVLCRLEHTTLRKV 222
KNVTLGVPRLKEI+N+++ K PS+ V+L+ G A ++A KA + +EHTTLR V
Sbjct: 1107 KNVTLGVPRLKEILNLAQNIKTPSMVVYLSEGNATQEAAKA--LRSTVEHTTLRSV 1160
>gi|256273567|gb|EEU08500.1| Rpo21p [Saccharomyces cerevisiae JAY291]
Length = 1733
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV+AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 1119
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L A D E+AK + +EHTTL+ V
Sbjct: 1120 LEPGHAADQEQAKLIRSAIEHTTLKSV 1146
>gi|190405143|gb|EDV08410.1| RNA polymerase II core subunit [Saccharomyces cerevisiae RM11-1a]
Length = 1733
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV+AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 1119
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L A D E+AK + +EHTTL+ V
Sbjct: 1120 LEPGHAADQEQAKLIRSAIEHTTLKSV 1146
>gi|346971808|gb|EGY15260.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium dahliae
VdLs.17]
Length = 1755
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN ARDK G + +KSL + NN M ++GSKGS+INISQ+ A VGQ
Sbjct: 721 MNIRETFESKVSRALNTARDKAGTTTQKSLKDLNNAVTMALSGSKGSSINISQMTALVGQ 780
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 781 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 840
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 841 AVKTAETG 848
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 67/116 (57%), Positives = 81/116 (69%), Gaps = 13/116 (11%)
Query: 108 FFHAMGGREGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSS 167
F H +G EG A +PGEMVG LAAQS+GEPATQMTLNTFHFAGVSS
Sbjct: 1057 FNHVLGELEG----------RWAKASISPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSS 1106
Query: 168 KNVTLGVPRLKEIINISKKPKAPSLTVFLT-GQAARDAEKAKNVLCRLEHTTLRKV 222
KNVTLGVPRLKEI+N+++ K PS+ V+L+ G A ++A KA + +EHTTLR V
Sbjct: 1107 KNVTLGVPRLKEILNLAQNIKTPSMVVYLSEGNATQEAAKA--LRSTVEHTTLRSV 1160
>gi|403223272|dbj|BAM41403.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 1645
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/126 (70%), Positives = 106/126 (84%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+L ++FE +VN+ LNDAR+++G SL NN+ +MV +GSKGS INISQ+IACVGQQ
Sbjct: 722 SLFESFEARVNKELNDAREQSGSVVASSLNISNNILSMVNSGSKGSTINISQIIACVGQQ 781
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF+ R+LPHFIK DYGPESRGFV NSYL+GLTP E FFHAMGGREG+IDTA
Sbjct: 782 NVEGKRIPFGFKDRSLPHFIKHDYGPESRGFVSNSYLSGLTPQEMFFHAMGGREGIIDTA 841
Query: 123 VKTAET 128
KT+ET
Sbjct: 842 CKTSET 847
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 71/88 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGE VGA+AAQS+GEPATQMTLNTFHFAGVSSKNVTLG+PRLKE+IN+ + PSLT++
Sbjct: 1078 PGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVTNVRTPSLTIY 1137
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKVL 223
L ++D E+AK + +LE+T +++
Sbjct: 1138 LDANISKDQERAKEMQTQLEYTNFERLV 1165
>gi|397135958|gb|AFO11474.1| RNA polymerase I, partial [Magnusiomyces magnusii]
Length = 869
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 103/128 (80%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L++TFE V+R LN ARD G A+KSL E NN+K MV++GSKGS INISQ+ ACVGQ
Sbjct: 519 MTLRETFEQNVSRTLNQARDNAGKYAEKSLKEXNNVKQMVISGSKGSFINISQMSACVGQ 578
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEG RIPFGF RTLPHF KDDY PES+GFVENSYL GL+P EFFFHAM GREGLIDT
Sbjct: 579 QIVEGXRIPFGFADRTLPHFAKDDYSPESKGFVENSYLRGLSPQEFFFHAMAGREGLIDT 638
Query: 122 AVKTAETA 129
AVKTA T
Sbjct: 639 AVKTAXTG 646
>gi|336463398|gb|EGO51638.1| DNA-directed RNA polymerase II largest subunit [Neurospora
tetrasperma FGSC 2508]
gi|350297387|gb|EGZ78364.1| DNA-directed RNA polymerase II largest subunit [Neurospora
tetrasperma FGSC 2509]
Length = 1761
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFEN+V++ LN ARDK G S + SL + NN M ++GSKGS+INISQ+ A VGQ
Sbjct: 722 MNIRETFENKVSKALNTARDKAGTSTESSLKDINNAVTMALSGSKGSSINISQMTALVGQ 781
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 782 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 841
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 842 AVKTAETG 849
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 193
+PGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++ K PS+
Sbjct: 1076 VSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVASNIKTPSMM 1135
Query: 194 VFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
V+L +AA E+AK + +EHT+LR V
Sbjct: 1136 VYLDSKAAT-QEEAKKMRSAVEHTSLRSV 1163
>gi|406603917|emb|CCH44586.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 1688
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G SA+ +L NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 667 MTLRESFEDNVIRYLNEARDKAGRSAEVNLKSLNNVKQMVSAGSKGSFINIAQMSACVGQ 726
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EF+FHAMGGREGLIDT
Sbjct: 727 QSVEGKRIAFGFADRTLPHFAKDDYSPESKGFVENSYLRGLTPQEFYFHAMGGREGLIDT 786
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 787 AVKTAETG 794
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 71/87 (81%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG +AAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+
Sbjct: 1019 PGEMVGVVAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 1078
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + A D E+AK + +EHTTL+ V
Sbjct: 1079 LDPEYAADQERAKEIRSAIEHTTLKSV 1105
>gi|120561176|gb|ABM26983.1| RNA polymerase II largest subunit [Vairimorpha necatrix]
Length = 1255
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 108/128 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
++++++FE+QVN ILN RD +G SA KSL+ NN++ MV+AGSKGS INISQV AC+GQ
Sbjct: 710 MSMRESFESQVNYILNKPRDISGASASKSLSFCNNMRTMVLAGSKGSFINISQVTACLGQ 769
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF R+LPHF K DY +SRGFVENSY+ G+TP EFFFHAMGGREGLIDT
Sbjct: 770 QNVEGKRIPFGFNYRSLPHFSKADYSGKSRGFVENSYVKGITPEEFFFHAMGGREGLIDT 829
Query: 122 AVKTAETA 129
A+KTAET
Sbjct: 830 AIKTAETG 837
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
P EMVG LAAQS+GEPATQMTLNTFH AGVS+ N+T+GVPRLKEIIN++K K P + ++
Sbjct: 1045 PNEMVGTLAAQSVGEPATQMTLNTFHLAGVSA-NITMGVPRLKEIINVAKNIKTPCMKIY 1103
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + E AK + LE + ++ +
Sbjct: 1104 LKDPFNKTLEMAKKIQSELEFSDIKSL 1130
>gi|353235719|emb|CCA67728.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Piriformospora indica DSM 11827]
Length = 1796
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++++FE+ VN LN ARD G A++SL + NN+K MVVAGSKGS INI+Q+ VGQ
Sbjct: 720 MTIRESFESHVNMHLNKARDTAGKMAQESLKDSNNVKQMVVAGSKGSFINIAQMSVAVGQ 779
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGFR R+LPHF KDD+ PESRGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 780 QSVEGKRIPFGFRHRSLPHFTKDDFSPESRGFVENSYLRGLTPSEFFFHAMAGREGLIDT 839
Query: 122 AVKTAET 128
A+KTAET
Sbjct: 840 AIKTAET 846
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/103 (60%), Positives = 71/103 (68%), Gaps = 5/103 (4%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEM G LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIIN++ K P LTV+
Sbjct: 1074 PGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPILTVY 1133
Query: 196 LTGQAARDAEK--AKNVLCRLEHTTLRKVLYIILRPATHYQVE 236
L + AR+ AK V L TTLR + + HY E
Sbjct: 1134 LQDEIAREETGVLAKAVQTELAFTTLRTITSTV---EIHYDPE 1173
>gi|367011663|ref|XP_003680332.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
gi|359747991|emb|CCE91121.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
Length = 1727
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/127 (72%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 828 AVKTAET 834
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 52/87 (59%), Gaps = 23/87 (26%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRL
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLXXX--------------- 1104
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
EKAK + +EHTTL+ V
Sbjct: 1105 --------XEKAKFIRSAIEHTTLKSV 1123
>gi|258563154|ref|XP_002582322.1| DNA-directed RNA polymerase II largest subunit [Uncinocarpus reesii
1704]
gi|237907829|gb|EEP82230.1| DNA-directed RNA polymerase II largest subunit [Uncinocarpus reesii
1704]
Length = 1747
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+++++TFE++V+R LN+ARD+ G +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 683 MSVRETFESKVSRALNNARDEAGTETEKSLKDLNNAVQMARSGSKGSTINISQMTAVVGQ 742
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 743 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 802
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 803 AVKTAETG 810
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 79/115 (68%), Gaps = 10/115 (8%)
Query: 108 FFHAMGGREGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSS 167
F H +G E + A+ A N PGEMVG LAAQS+GEPATQMTLNTFHFAGVSS
Sbjct: 1017 FQHVLGAIES------RFAKAAAN----PGEMVGVLAAQSIGEPATQMTLNTFHFAGVSS 1066
Query: 168 KNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
KNVTLGVPRLKEI+N++ K PS+TV+ A D E AK + +EHT+LR V
Sbjct: 1067 KNVTLGVPRLKEILNVATNIKTPSMTVYQDPSRAMDKESAKQLRSIVEHTSLRSV 1121
>gi|119186393|ref|XP_001243803.1| hypothetical protein CIMG_03244 [Coccidioides immitis RS]
gi|392870516|gb|EAS32326.2| DNA-directed RNA polymerase II largest subunit [Coccidioides
immitis RS]
Length = 1750
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+++++TFE++V+R LN+ARD+ G +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 731 MSVRETFESKVSRALNNARDEAGTETEKSLKDLNNAVQMARSGSKGSTINISQMTAVVGQ 790
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 791 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 850
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 851 AVKTAETG 858
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 78/115 (67%), Gaps = 10/115 (8%)
Query: 108 FFHAMGGREGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSS 167
F H +G E + A+ A N PGEMVG LAAQS+GEPATQMTLNTFHFAGVSS
Sbjct: 1065 FQHVLGAIES------RFAKAAAN----PGEMVGVLAAQSIGEPATQMTLNTFHFAGVSS 1114
Query: 168 KNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
KNVTLGVPRLKEI+N++ K PS+TV+ A D E AK + +EHT LR V
Sbjct: 1115 KNVTLGVPRLKEILNVATHIKTPSMTVYQDPARAMDKESAKQLRSVVEHTNLRSV 1169
>gi|303317798|ref|XP_003068901.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240108582|gb|EER26756.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 1746
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+++++TFE++V+R LN+ARD+ G +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 731 MSVRETFESKVSRALNNARDEAGTETEKSLKDLNNAVQMARSGSKGSTINISQMTAVVGQ 790
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 791 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 850
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 851 AVKTAETG 858
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 78/115 (67%), Gaps = 10/115 (8%)
Query: 108 FFHAMGGREGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSS 167
F H +G E + A+ A N PGEMVG LAAQS+GEPATQMTLNTFHFAGVSS
Sbjct: 1065 FQHVLGAIES------RFAKAAAN----PGEMVGVLAAQSIGEPATQMTLNTFHFAGVSS 1114
Query: 168 KNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
KNVTLGVPRLKEI+N++ K PS+TV+ A D E AK + +EHT LR V
Sbjct: 1115 KNVTLGVPRLKEILNVATHIKTPSMTVYQDPARAMDKESAKQLRSVVEHTNLRSV 1169
>gi|4092885|gb|AAD12605.1| RNA polymerase II largest subunit [Antonospora locustae]
Length = 1553
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 89/127 (70%), Positives = 105/127 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L++T E+++N LN ARD +G A +SL N LK M+ AGSKGS INISQ+ +CVGQ
Sbjct: 664 MNLQETLESKINLALNKARDISGTRAVESLNHLNGLKQMLKAGSKGSYINISQITSCVGQ 723
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QN+E KRIPFGFR+RTLPHF+K+DYGPESRGFV NSYL+GL P EFFFHAMGGREGLIDT
Sbjct: 724 QNIESKRIPFGFRQRTLPHFVKNDYGPESRGFVTNSYLSGLNPEEFFFHAMGGREGLIDT 783
Query: 122 AVKTAET 128
A KTAET
Sbjct: 784 ACKTAET 790
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 61/85 (71%), Gaps = 3/85 (3%)
Query: 138 EMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLT 197
EMVG LAAQS+GEPATQMTLNTFH+AGV ++ +T GVPRLKEIIN++K + PS ++L
Sbjct: 1025 EMVGTLAAQSIGEPATQMTLNTFHYAGV-AQAITQGVPRLKEIINVAKNIRTPSHKIYL- 1082
Query: 198 GQAARDAEKAKNVLCRLEHTTLRKV 222
+ E+AK V +E+ + V
Sbjct: 1083 -KPGSTIEQAKKVASEIEYINIEMV 1106
>gi|320038943|gb|EFW20878.1| DNA-directed RNA polymerase II largest subunit [Coccidioides
posadasii str. Silveira]
Length = 1750
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+++++TFE++V+R LN+ARD+ G +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 731 MSVRETFESKVSRALNNARDEAGTETEKSLKDLNNAVQMARSGSKGSTINISQMTAVVGQ 790
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 791 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 850
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 851 AVKTAETG 858
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 78/115 (67%), Gaps = 10/115 (8%)
Query: 108 FFHAMGGREGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSS 167
F H +G E + A+ A N PGEMVG LAAQS+GEPATQMTLNTFHFAGVSS
Sbjct: 1065 FQHVLGAIES------RFAKAAAN----PGEMVGVLAAQSIGEPATQMTLNTFHFAGVSS 1114
Query: 168 KNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
KNVTLGVPRLKEI+N++ K PS+TV+ A D E AK + +EHT LR V
Sbjct: 1115 KNVTLGVPRLKEILNVATHIKTPSMTVYQDPARAMDKESAKQLRSVVEHTNLRSV 1169
>gi|259145103|emb|CAY78367.1| Rpo21p [Saccharomyces cerevisiae EC1118]
Length = 1733
Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ ++ + NN+K MV+AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRFLNEARDKAGRLAEVNMKDLNNVKQMVMAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 1119
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L A D E+AK + +EHTTL+ V
Sbjct: 1120 LEPGHAADQEQAKLIRSAIEHTTLKSV 1146
>gi|156835819|ref|XP_001642173.1| hypothetical protein Kpol_162p1 [Vanderwaltozyma polyspora DSM
70294]
gi|156112609|gb|EDO14315.1| hypothetical protein Kpol_162p1 [Vanderwaltozyma polyspora DSM
70294]
Length = 1311
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 390 MTLRESFEDNVVRFLNEARDKAGRLAEVNLNDTNNVKQMVSAGSKGSFINIAQMSACVGQ 449
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 450 QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 509
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 510 AVKTAETG 517
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PS TV+
Sbjct: 742 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSSTVY 801
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + A D EKAK + +EHTTL+ V
Sbjct: 802 LEPEYAIDQEKAKFIRSAIEHTTLKSV 828
>gi|345565425|gb|EGX48374.1| hypothetical protein AOL_s00080g3 [Arthrobotrys oligospora ATCC
24927]
Length = 1760
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 105/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFEN+V+R LN ARD G + +KSL + NN M +GSKGSNINISQ+ A VGQ
Sbjct: 741 MNIRETFENKVSRSLNLARDDAGSATEKSLKDLNNAIQMARSGSKGSNINISQMSAVVGQ 800
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 801 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDT 860
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 861 AVKTAETG 868
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/91 (69%), Positives = 72/91 (79%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++K K PS
Sbjct: 1089 AAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKNIKTPS 1148
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTV+ + + EKAK + +EHTTLR V
Sbjct: 1149 LTVYQEPEHMYNREKAKLLRSAVEHTTLRSV 1179
>gi|397135842|gb|AFO11416.1| RNA polymerase I, partial [Vanderwaltozyma polyspora]
Length = 871
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 521 MTLRESFEDNVVRFLNEARDKAGRLAEVNLNDTNNVKQMVSAGSKGSFINIAQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 581 QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|45439293|gb|AAS64314.1| DNA-dependent RNA polymerase II largest subunit [Amanita
phalloides]
Length = 1007
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 89/128 (69%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ R LN ARD++G A++ + E NN+K MVVAGSKGS INISQ+ CVGQ
Sbjct: 636 MTLRESFESMAERELNLARDRSGKYAQEHMKEDNNVKQMVVAGSKGSFINISQMSVCVGQ 695
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEG+RIPFGFR R+LPHF KDD+GP++RGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 696 QSVEGRRIPFGFRHRSLPHFTKDDFGPDARGFVENSYLRGLTPQEFFFHAMAGREGLIDT 755
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 756 AVKTAETG 763
>gi|121701053|ref|XP_001268791.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
gi|119396934|gb|EAW07365.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
Length = 1765
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 730 MNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQ 789
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 790 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 849
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 850 AVKTAET 856
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 70/91 (76%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A +PGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++ K PS
Sbjct: 1078 AAASPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPS 1137
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+TV+ D E AK + +EHT+LR V
Sbjct: 1138 MTVYQMPSKCHDKESAKQLRSAVEHTSLRSV 1168
>gi|366998165|ref|XP_003683819.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
gi|357522114|emb|CCE61385.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
Length = 1719
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRFLNEARDKAGRLAEVNLNDLNNVKQMVSAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PS TV+
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSSTVY 1119
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + A D EKAK + +EHTTL+ V
Sbjct: 1120 LDPEYATDQEKAKIIRSAIEHTTLKSV 1146
>gi|397135846|gb|AFO11418.1| RNA polymerase I, partial [Kluyveromyces marxianus]
Length = 871
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G SA+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 521 MTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 581 QSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTA T
Sbjct: 641 AVKTAXTG 648
>gi|70996164|ref|XP_752837.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus
fumigatus Af293]
gi|66850472|gb|EAL90799.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus Af293]
gi|159131590|gb|EDP56703.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus A1163]
Length = 1750
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 728 MNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQ 787
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 788 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 847
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 848 AVKTAET 854
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 78/115 (67%), Gaps = 10/115 (8%)
Query: 108 FFHAMGGREGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSS 167
F H +G E + A+ A N PGEMVG LAAQS+GEPATQMTLNTFHFAGVSS
Sbjct: 1062 FQHVLGAIES------RFAKAAAN----PGEMVGVLAAQSIGEPATQMTLNTFHFAGVSS 1111
Query: 168 KNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
KNVTLGVPRLKEI+N++ K PS+TV+ D E AK + +EHT+LR V
Sbjct: 1112 KNVTLGVPRLKEILNVATNIKTPSMTVYQLPHRCHDKESAKQLRSVVEHTSLRSV 1166
>gi|397135826|gb|AFO11408.1| RNA polymerase I, partial [Tetrapisispora phaffii]
Length = 871
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 521 MTLRESFEDNVVRFLNEARDKAGRLAEVNLNDLNNVKQMVSAGSKGSFINIAQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 581 QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|302503240|ref|XP_003013580.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
gi|291177145|gb|EFE32940.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
Length = 1635
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G + +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 621 MNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQ 680
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 681 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 740
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 741 AVKTAETG 748
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 70/91 (76%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++ K PS
Sbjct: 969 AAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPS 1028
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+TV+ + + E AK + +EHT+LR V
Sbjct: 1029 MTVYQAPECRMNKESAKQLRSIVEHTSLRSV 1059
>gi|397135830|gb|AFO11410.1| RNA polymerase I, partial [Zygotorulaspora mrakii]
Length = 871
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 521 MTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 581 QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|358370099|dbj|GAA86711.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus
kawachii IFO 4308]
Length = 1747
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 727 MNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQ 786
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 787 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 846
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 847 AVKTAETG 854
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 70/91 (76%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++ K PS
Sbjct: 1075 AGANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPS 1134
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+TV+ + D E AK + +EHT+LR V
Sbjct: 1135 MTVYQEAARSFDKEGAKQLRSAVEHTSLRSV 1165
>gi|350638666|gb|EHA27022.1| DNA-directed RNA polymerase II, largest subunit [Aspergillus niger
ATCC 1015]
Length = 1743
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 727 MNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQ 786
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 787 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 846
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 847 AVKTAETG 854
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 70/91 (76%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++ K PS
Sbjct: 1075 AGANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPS 1134
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+TV+ + D E AK + +EHT+LR V
Sbjct: 1135 MTVYQEAARSFDKEGAKQLRSAVEHTSLRSV 1165
>gi|238487198|ref|XP_002374837.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
gi|317143741|ref|XP_001819667.2| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus oryzae
RIB40]
gi|220699716|gb|EED56055.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
Length = 1744
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 728 MNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQ 787
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 788 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 847
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 848 AVKTAET 854
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 68/91 (74%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A GEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++ K PS
Sbjct: 1076 ANAPAGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPS 1135
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+TV+ D E AK + +EHT+LR V
Sbjct: 1136 MTVYQEPGRTHDKEGAKQLRSVVEHTSLRSV 1166
>gi|119494984|ref|XP_001264289.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
gi|119412451|gb|EAW22392.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
Length = 1750
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 728 MNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQ 787
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 788 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 847
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 848 AVKTAET 854
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 69/91 (75%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++ K PS
Sbjct: 1076 AGANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPS 1135
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+TV+ D E AK + +EHT+LR V
Sbjct: 1136 MTVYQLPHKCHDKESAKQLRSVVEHTSLRSV 1166
>gi|397135836|gb|AFO11413.1| RNA polymerase I, partial [Torulaspora delbrueckii]
Length = 871
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 521 MTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 581 QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|259016116|gb|ACV89338.1| RNA polymerase II 215kD subunit [Nannochorista sp. BMW-2009]
Length = 278
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 91/94 (96%), Positives = 93/94 (98%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
L+QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQ
Sbjct: 185 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 244
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVEN 96
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVEN
Sbjct: 245 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVEN 278
>gi|9955855|dbj|BAB12227.1| RNA polymerase II largest subunit [Aspergillus oryzae]
gi|83767526|dbj|BAE57665.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867452|gb|EIT76698.1| RNA polymerase II, large subunit [Aspergillus oryzae 3.042]
Length = 1748
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 728 MNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQ 787
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 788 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 847
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 848 AVKTAET 854
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 68/91 (74%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A GEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++ K PS
Sbjct: 1076 ANAPAGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPS 1135
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+TV+ D E AK + +EHT+LR V
Sbjct: 1136 MTVYQEPGRTHDKEGAKQLRSVVEHTSLRSV 1166
>gi|145230824|ref|XP_001389676.1| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus niger CBS
513.88]
gi|134055799|emb|CAK37321.1| unnamed protein product [Aspergillus niger]
Length = 1747
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 727 MNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQ 786
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 787 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 846
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 847 AVKTAETG 854
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 70/91 (76%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++ K PS
Sbjct: 1075 AGANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPS 1134
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+TV+ + D E AK + +EHT+LR V
Sbjct: 1135 MTVYQEAARSFDKEGAKQLRSAVEHTSLRSV 1165
>gi|444321244|ref|XP_004181278.1| hypothetical protein TBLA_0F02170 [Tetrapisispora blattae CBS 6284]
gi|387514322|emb|CCH61759.1| hypothetical protein TBLA_0F02170 [Tetrapisispora blattae CBS 6284]
Length = 1726
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRFLNEARDKAGRLAEVNLNDTNNVKQMVSAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 69/87 (79%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLT +
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTAY 1119
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L A D EKAK + +EHTTL+ V
Sbjct: 1120 LEPAYAADQEKAKLIRSAIEHTTLKSV 1146
>gi|366989121|ref|XP_003674328.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
gi|342300191|emb|CCC67948.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
Length = 1716
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRFLNEARDKAGRLAEVNLNDLNNVKQMVSAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIGFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 1119
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + D EKAK + +EHTTL+ +
Sbjct: 1120 LKDGYSSDQEKAKFIRSAIEHTTLKSI 1146
>gi|329132885|gb|AEB78333.1| RNA polymerase II largest subunit [Diplonema sp. ATCC 50224]
Length = 1010
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 96/150 (64%), Positives = 113/150 (75%), Gaps = 4/150 (2%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+K+TFE +N+ILN R+ G A++SLT N+ K MV AGSKGS +NISQ+ A VGQQN
Sbjct: 631 VKETFEANINKILNKTREDAGKRAQQSLTRSNSFKVMVSAGSKGSYLNISQITAVVGQQN 690
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
V GKRIP+GFRKRTLPHF +DDYGPESRGFV+NSYL GLTPSEFFFH GGREGLIDTA
Sbjct: 691 VGGKRIPYGFRKRTLPHFTQDDYGPESRGFVQNSYLEGLTPSEFFFHMSGGREGLIDTAC 750
Query: 124 KTAETACNAKCAPGEMVGALAAQSLGEPAT 153
KTAET + ++V AL +G AT
Sbjct: 751 KTAETGYIQR----KLVKALEDLYVGYDAT 776
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 131 NAKCAPGEMVGALAAQSLGEPATQ 154
+A+ PGEMVG +AAQS+GEPATQ
Sbjct: 987 SAQVPPGEMVGCIAAQSMGEPATQ 1010
>gi|226876269|gb|ACO89455.1| RNA polymerase II largest subunit, partial [Xeromyces bisporus]
Length = 618
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 255 MNVRETFESKVSRALNNARDEAGSETEKSLKDINNAIQMARSGSKGSTINISQMTAVVGQ 314
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 315 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 374
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 375 AVKTAETG 382
>gi|120561203|gb|ABM26987.1| RNA polymerase II largest subunit, partial [Taphrina deformans]
Length = 1001
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE V+++LN ARD G +A+ SL++ N +K MV+AGSKGS INISQ+ ACVGQ
Sbjct: 631 MTLRESFEAGVSQVLNGARDTVGKNAESSLSKQNAVKQMVIAGSKGSFINISQMSACVGQ 690
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIP+GF+ RTLPHF KDDY PESRGFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 691 QMVEGKRIPYGFKFRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDT 750
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 751 AVKTAETG 758
>gi|397135866|gb|AFO11428.1| RNA polymerase I, partial [Aciculoconidium aculeatum]
Length = 872
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 105/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+RILN ARD G SA+ +L + NN+K MV +GSKGS INISQ+ A VGQ
Sbjct: 521 MTLRESFEHNVSRILNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSAXVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 581 QIVEGKRIPFGFSDRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|3063677|gb|AAC14137.1| RNA polymerase II largest subunit [Dictyostelium discoideum]
Length = 757
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 89/111 (80%), Positives = 98/111 (88%)
Query: 6 QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVE 65
+TFE +VN++LN ARD G SA+ SL+E NNLKAMV AGSKGS INISQ++ACVGQQNVE
Sbjct: 647 ETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQMMACVGQQNVE 706
Query: 66 GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 116
GKRIPFGF+ RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 707 GKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 757
>gi|354803886|gb|AER40907.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 39955]
Length = 532
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 105/127 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G S ++SL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 166 MNVRDTFENKVSMALNAARDKAGTSTQQSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 225
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 226 QSVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 285
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 286 AVKTAET 292
>gi|408690944|gb|AFU81844.1| RNA polymerase II subunit 1, partial [Microcera larvarum]
Length = 532
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 105/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 166 MNVRDTFENKVSMALNAARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 225
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 226 QSVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 285
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 286 AVKTAETG 293
>gi|226876261|gb|ACO89451.1| RNA polymerase II largest subunit, partial [Leiothecium
ellipsoideum]
Length = 438
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 182 MNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQ 241
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 242 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 301
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 302 AVKTAETG 309
>gi|115492277|ref|XP_001210766.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
NIH2624]
gi|114197626|gb|EAU39326.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
NIH2624]
Length = 1742
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 729 MNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQ 788
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 789 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 848
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 849 AVKTAETG 856
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 70/91 (76%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A +PGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++ K PS
Sbjct: 1077 AAASPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPS 1136
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+TV+ D E AK + +EHT+LR V
Sbjct: 1137 MTVYQEPYTCHDKESAKQLRSAVEHTSLRSV 1167
>gi|354803842|gb|AER40885.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 22131]
Length = 528
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 105/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 162 MNVRDTFENKVSMALNAARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 221
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 222 QSVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 281
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 282 AVKTAETG 289
>gi|315056155|ref|XP_003177452.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum
CBS 118893]
gi|311339298|gb|EFQ98500.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum
CBS 118893]
Length = 1748
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G + +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 730 MNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQ 789
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 790 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 849
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 850 AVKTAETG 857
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 70/91 (76%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++ K PS
Sbjct: 1078 AAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPS 1137
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+TV+ + + E AK + +EHT+LR V
Sbjct: 1138 MTVYQAPERRMNKESAKQLRSIVEHTSLRSV 1168
>gi|302662921|ref|XP_003023110.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
gi|291187089|gb|EFE42492.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
Length = 1744
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G + +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 730 MNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQ 789
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 790 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 849
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 850 AVKTAETG 857
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 70/91 (76%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++ K PS
Sbjct: 1078 AAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPS 1137
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+TV+ + + E AK + +EHT+LR V
Sbjct: 1138 MTVYQAPECRMNKESAKQLRSIVEHTSLRSV 1168
>gi|354803830|gb|AER40879.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 20475]
gi|354803832|gb|AER40880.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 22170]
Length = 528
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 105/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 162 MNVRDTFENKVSMALNAARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 221
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 222 QSVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 281
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 282 AVKTAETG 289
>gi|367018612|ref|XP_003658591.1| hypothetical protein MYCTH_2294525 [Myceliophthora thermophila ATCC
42464]
gi|347005858|gb|AEO53346.1| hypothetical protein MYCTH_2294525 [Myceliophthora thermophila ATCC
42464]
Length = 1754
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 105/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFEN+V+ LN ARDK G S +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 723 MNIRETFENKVSTALNKARDKAGTSTQKSLKDLNNAVIMARSGSKGSSINISQMTALVGQ 782
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 783 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 842
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 843 AVKTAETG 850
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 193
APGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++K K PS+
Sbjct: 1076 VAPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKDIKTPSMV 1135
Query: 194 VFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
V+L A E AK + +EHT+LR V
Sbjct: 1136 VYLD-YANATQEDAKRMRSAVEHTSLRSV 1163
>gi|354803848|gb|AER40888.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 22289]
Length = 528
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 105/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 162 MNVRDTFENKVSMALNAARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 221
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 222 QSVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 281
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 282 AVKTAETG 289
>gi|296822712|ref|XP_002850330.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
113480]
gi|238837884|gb|EEQ27546.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
113480]
Length = 1748
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G + +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 730 MNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQ 789
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 790 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 849
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 850 AVKTAETG 857
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 70/91 (76%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++ K PS
Sbjct: 1078 AAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPS 1137
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+TV+ + D E AK + +EHT+LR V
Sbjct: 1138 MTVYQAPECRMDKESAKQLRSIVEHTSLRSV 1168
>gi|354803822|gb|AER40875.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 13856]
gi|354803826|gb|AER40877.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 13966]
gi|354803834|gb|AER40881.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 20482]
gi|408690924|gb|AFU81834.1| RNA polymerase II subunit 1, partial [Microcera diploa]
Length = 528
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 105/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 162 MNVRDTFENKVSMALNAARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 221
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 222 QSVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 281
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 282 AVKTAETG 289
>gi|397135954|gb|AFO11472.1| RNA polymerase I, partial [Phaffomyces opuntiae]
Length = 871
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G SA+ +L NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 521 MTLRESFEDNVIRYLNEARDKAGRSAEVNLKGLNNVKQMVSAGSKGSFINIAQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EF+FHAMGGREGLIDT
Sbjct: 581 QSVEGKRIAFGFADRTLPHFAKDDYSPESKGFVENSYLRGLTPQEFYFHAMGGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|354803840|gb|AER40884.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 22110]
Length = 530
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 105/127 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G S ++SL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 166 MNVRDTFENKVSMALNAARDKAGTSTQQSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 225
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 226 QSVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 285
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 286 AVKTAET 292
>gi|408690922|gb|AFU81833.1| RNA polymerase II subunit 1, partial [Microcera coccophila]
Length = 532
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 105/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 166 MNVRDTFENKVSMALNAARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 225
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 226 QSVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 285
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 286 AVKTAETG 293
>gi|171695074|ref|XP_001912461.1| hypothetical protein [Podospora anserina S mat+]
gi|170947779|emb|CAP59942.1| unnamed protein product [Podospora anserina S mat+]
Length = 1748
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 92/127 (72%), Positives = 105/127 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFEN+V+ LN ARDK G S +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 721 MNVRETFENKVSAALNTARDKAGTSTEKSLKDLNNAVTMARSGSKGSSINISQMTALVGQ 780
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 781 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 840
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 841 AVKTAET 847
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 193
+PGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++K K PS+
Sbjct: 1074 VSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKDIKTPSMV 1133
Query: 194 VFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
V+L + A E AK++ +EHT+LR V
Sbjct: 1134 VYLDKERAT-QEDAKSMRNLVEHTSLRSV 1161
>gi|425770649|gb|EKV09117.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425771955|gb|EKV10383.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1733
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 107/127 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G + +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 724 MNVRETFESKVSRALNNARDEAGDATEKSLKDLNNAIQMARSGSKGSAINISQMTALVGQ 783
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 784 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 843
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 844 AVKTAET 850
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 78/115 (67%), Gaps = 10/115 (8%)
Query: 108 FFHAMGGREGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSS 167
F H +G E + A A N PGEMVG LAAQS+GEPATQMTLNTFHFAGVSS
Sbjct: 1058 FQHVLGAIES------RFARAAAN----PGEMVGVLAAQSIGEPATQMTLNTFHFAGVSS 1107
Query: 168 KNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
KNVTLGVPRLKEI+N++ K PS+TV+ G D E AK + +EHT+LR V
Sbjct: 1108 KNVTLGVPRLKEILNVATNIKTPSMTVYQEGMMTHDKEGAKLLRSLVEHTSLRSV 1162
>gi|408691044|gb|AFU81894.1| RNA polymerase II subunit 1, partial [Microcera sp. NRRL 26790]
Length = 532
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 105/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 166 MNVRDTFENKVSMALNAARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 225
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 226 QSVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 285
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 286 AVKTAETG 293
>gi|327294163|ref|XP_003231777.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
CBS 118892]
gi|326465722|gb|EGD91175.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
CBS 118892]
Length = 1744
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G + +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 730 MNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQ 789
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 790 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 849
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 850 AVKTAETG 857
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 70/91 (76%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++ K PS
Sbjct: 1078 AAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPS 1137
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+TV+ + + E AK + +EHT+LR V
Sbjct: 1138 MTVYQAPECRMNKESAKQLRSIVEHTSLRSV 1168
>gi|354803828|gb|AER40878.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 20441]
gi|354803836|gb|AER40882.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 20923]
gi|354803844|gb|AER40886.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 22285]
gi|354803846|gb|AER40887.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 22288]
gi|354803976|gb|AER40952.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52800]
Length = 528
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 105/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 162 MNVRDTFENKVSMALNAARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 221
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 222 QSVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 281
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 282 AVKTAETG 289
>gi|354803820|gb|AER40874.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 13854]
gi|354803824|gb|AER40876.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 13962]
Length = 528
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 105/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 162 MNVRDTFENKVSMALNAARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 221
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 222 QSVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 281
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 282 AVKTAETG 289
>gi|354803878|gb|AER40903.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 39716]
gi|354803880|gb|AER40904.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 39862]
gi|354803882|gb|AER40905.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 39924]
gi|354803884|gb|AER40906.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 39931]
Length = 532
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 105/127 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G S ++SL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 166 MNVRDTFENKVSMALNAARDKAGTSTQQSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 225
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 226 QSVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 285
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 286 AVKTAET 292
>gi|354803838|gb|AER40883.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 22102]
Length = 532
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 105/127 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G S ++SL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 166 MNVRDTFENKVSMALNAARDKAGTSTQQSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 225
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 226 QSVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 285
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 286 AVKTAET 292
>gi|326472846|gb|EGD96855.1| DNA-dependent RNA polymerase II largest subunit [Trichophyton
tonsurans CBS 112818]
Length = 1657
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G + +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 707 MNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQ 766
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 767 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 826
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 827 AVKTAETG 834
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/42 (88%), Positives = 38/42 (90%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLG 173
A PGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLG
Sbjct: 1055 AAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLG 1096
>gi|397135802|gb|AFO11396.1| RNA polymerase I, partial [Wickerhamomyces canadensis]
Length = 871
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G SA+ +L NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 521 MTLRESFEDNVIRYLNEARDKAGRSAEVNLKGLNNVKQMVSAGSKGSFINIAQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EF+FHAMGGREGLIDT
Sbjct: 581 QSVEGKRIAFGFADRTLPHFAKDDYSPESKGFVENSYLRGLTPQEFYFHAMGGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|326480447|gb|EGE04457.1| DNA-directed RNA polymerase II largest subunit [Trichophyton
equinum CBS 127.97]
Length = 1712
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G + +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 730 MNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQ 789
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 790 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 849
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 850 AVKTAETG 857
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 172 LGVPRLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+GVPRLKEI+N++ K PS+TV+ + + E AK + +EHT+LR V
Sbjct: 1086 VGVPRLKEILNVATNIKTPSMTVYQAPECRMNKESAKQLRSIVEHTSLRSV 1136
>gi|408691090|gb|AFU81917.1| RNA polymerase II subunit 1, partial [Fusarium sp. KOD-2012c]
Length = 535
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|397135926|gb|AFO11458.1| RNA polymerase I, partial [Sporopachydermia lactativora]
Length = 871
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 103/128 (80%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+ TFE+ V +LN ARD G S++ +L NN+K MVVAGSKGS INISQ+ ACVGQ
Sbjct: 520 MTLRSTFESLVTSVLNQARDNAGKSSEVNLKNDNNVKQMVVAGSKGSFINISQMSACVGQ 579
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKR+PFGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 580 QIVEGKRVPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 639
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 640 AVKTAETG 647
>gi|162606578|ref|XP_001713319.1| DNA-directed RNA polymerase II largest chain [Guillardia theta]
gi|12580785|emb|CAC27103.1| DNA-directed RNA polymerase II largest chain [Guillardia theta]
Length = 1473
Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats.
Identities = 85/122 (69%), Positives = 103/122 (84%)
Query: 8 FENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGK 67
EN +N++LN+ARD G SA+K LT YNNLK M+ +GSKGS INISQ++ACVGQQNVEGK
Sbjct: 703 LENHLNKVLNNARDMAGSSAQKCLTSYNNLKKMIFSGSKGSLINISQIVACVGQQNVEGK 762
Query: 68 RIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAE 127
RIPFGFRKR+LPH+ ++ PE+RGFV NSY+ GL P EFFFH+MGGREGLIDTA+KT+E
Sbjct: 763 RIPFGFRKRSLPHYHYKNFEPETRGFVVNSYIEGLFPDEFFFHSMGGREGLIDTAIKTSE 822
Query: 128 TA 129
T
Sbjct: 823 TG 824
Score = 117 bits (293), Expect = 5e-24, Method: Composition-based stats.
Identities = 54/87 (62%), Positives = 68/87 (78%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG ++AQS+G+PATQMTLNTFHFAGVS+KNVTLGVPRLKEII+I K K+PSLT+F
Sbjct: 1054 PGEMVGTISAQSIGQPATQMTLNTFHFAGVSAKNVTLGVPRLKEIIDIQKNIKSPSLTIF 1113
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + + D K K + +E L ++
Sbjct: 1114 LHKKCSNDPRKVKKIQESIESVRLNRI 1140
>gi|397135828|gb|AFO11409.1| RNA polymerase I, partial [Nakaseomyces delphensis]
Length = 871
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 521 MTLRESFEDNVVRYLNEARDKAGRLAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 581 QSVEGKRIGFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|408690992|gb|AFU81868.1| RNA polymerase II subunit 1, partial [Fusarium sp. KOD-2012d]
Length = 535
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|380495547|emb|CCF32312.1| DNA-directed RNA polymerase II subunit RPB1 [Colletotrichum
higginsianum]
Length = 1192
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V++ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 160 MNIRETFESKVSKALNTARDKAGTTTQKSLKDLNNAVTMASSGSKGSSINISQMTALVGQ 219
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 220 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 279
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 280 AVKTAET 286
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/132 (51%), Positives = 85/132 (64%), Gaps = 13/132 (9%)
Query: 108 FFHAMGGREGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSS 167
F H +G E D A +PGEMVG +AAQS+GEPATQMTLNTFHFAGVSS
Sbjct: 496 FEHVLGELEARWDRAF----------VSPGEMVGVIAAQSIGEPATQMTLNTFHFAGVSS 545
Query: 168 KNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKVLYIIL 227
KNVTLGVPRLKEI+N+++ K PS+ V+L+G+ E AK + +EHTTLR V +
Sbjct: 546 KNVTLGVPRLKEILNLAQNIKTPSMVVYLSGEDNASQEAAKALRSTVEHTTLRSVTAVT- 604
Query: 228 RPATHYQVELIS 239
+Y E+ S
Sbjct: 605 --EIYYDPEITS 614
>gi|159467413|ref|XP_001691886.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
reinhardtii]
gi|158278613|gb|EDP04376.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
reinhardtii]
Length = 1789
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 91/125 (72%), Positives = 102/125 (81%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FE QVN+ILN RD G +A S+ NN+ MV AGSKGSNINISQ++ CVGQQN
Sbjct: 724 IHESFEAQVNQILNKCRDDAGKAAYMSVDLSNNIIKMVTAGSKGSNINISQMMGCVGQQN 783
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHF KDD GPE+RGFV NSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 784 VEGKRIPFGFQNRTLPHFNKDDLGPEARGFVGNSYLRGLTPQEFFFHAMGGREGLIDTAV 843
Query: 124 KTAET 128
KTA T
Sbjct: 844 KTAST 848
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 67/92 (72%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ GE VG +AAQSLGEP TQMTLNTFHFAGVS+KNVTLGVPRL E+IN++K K P+
Sbjct: 1072 AQAHAGECVGTVAAQSLGEPTTQMTLNTFHFAGVSAKNVTLGVPRLTELINLAKNIKTPT 1131
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVL 223
LTV L + + AK + +LE+T + V+
Sbjct: 1132 LTVHLLPGLRENKDAAKEIQSKLEYTCFKNVV 1163
>gi|120561168|gb|ABM26979.1| RNA polymerase II largest subunit [Nosema empoascae]
Length = 764
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+QVN +LN ARD +G S + SL NN+ MV+AGSKGS INI QV ACVGQ
Sbjct: 623 MTMKESFESQVNYVLNKARDVSGTSTQGSLNRCNNMGTMVLAGSKGSFINILQVTACVGQ 682
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF RTLPHF K+DY +SRGFVENSYL+GL+P EFFFHAMGGREGLIDT
Sbjct: 683 QNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGGREGLIDT 742
Query: 122 AVKTAETA 129
A+KTAET
Sbjct: 743 AIKTAETG 750
>gi|255941856|ref|XP_002561697.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586320|emb|CAP94069.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1733
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 107/127 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G + +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 724 MNVRETFESKVSRALNNARDEAGDATEKSLKDLNNAIQMARSGSKGSAINISQMTALVGQ 783
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 784 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 843
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 844 AVKTAET 850
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 78/115 (67%), Gaps = 10/115 (8%)
Query: 108 FFHAMGGREGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSS 167
F H +G E + A A N PGEMVG LAAQS+GEPATQMTLNTFHFAGVSS
Sbjct: 1058 FQHVLGAIES------RFARAAAN----PGEMVGVLAAQSIGEPATQMTLNTFHFAGVSS 1107
Query: 168 KNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
KNVTLGVPRLKEI+N++ K PS+TV+ G D E AK + +EHT+LR V
Sbjct: 1108 KNVTLGVPRLKEILNVATNIKTPSMTVYQEGVKTHDKEGAKLLRSLVEHTSLRSV 1162
>gi|397135798|gb|AFO11394.1| RNA polymerase I, partial [Starmera amethionina]
Length = 870
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G SA+ +L NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 520 MTLRESFEDNVIRYLNEARDKAGRSAEVNLKGLNNVKQMVSAGSKGSFINIAQMSACVGQ 579
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EF+FHAMGGREGLIDT
Sbjct: 580 QSVEGKRIAFGFADRTLPHFAKDDYSPESKGFVENSYLRGLTPQEFYFHAMGGREGLIDT 639
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 640 AVKTAETG 647
>gi|306413095|gb|ADM86645.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_8a KOD-2010]
Length = 536
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|408690888|gb|AFU81816.1| RNA polymerase II subunit 1, partial [Cylindrocarpon sp. NRRL 6149]
Length = 535
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|85111774|ref|XP_964097.1| DNA-directed RNA polymerase II largest subunit [Neurospora crassa
OR74A]
gi|28925863|gb|EAA34861.1| DNA-directed RNA polymerase II largest subunit [Neurospora crassa
OR74A]
Length = 1752
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFEN+V++ LN ARDK G + + SL + NN M ++GSKGS+INISQ+ A VGQ
Sbjct: 722 MNIRETFENKVSKALNTARDKAGTTTESSLKDINNAVTMALSGSKGSSINISQMTALVGQ 781
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 782 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 841
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 842 AVKTAETG 849
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 193
+PGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++ K PS+
Sbjct: 1076 VSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVASNIKTPSMM 1135
Query: 194 VFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
V+L +AA E+AK + +EHT+LR V
Sbjct: 1136 VYLDSKAAT-QEEAKKMRSAVEHTSLRSV 1163
>gi|397135804|gb|AFO11397.1| RNA polymerase I, partial [Cyberlindnera americana]
Length = 870
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G SA+ +L NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 520 MTLRESFEDNVIRYLNEARDKAGRSAEVNLKGLNNVKQMVSAGSKGSFINIAQMSACVGQ 579
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EF+FHAMGGREGLIDT
Sbjct: 580 QSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFYFHAMGGREGLIDT 639
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 640 AVKTAETG 647
>gi|408691066|gb|AFU81905.1| RNA polymerase II subunit 1, partial [Nectria desmazierii]
Length = 535
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|242778248|ref|XP_002479200.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722819|gb|EED22237.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
Length = 1755
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 89/127 (70%), Positives = 107/127 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+AR++ G +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 729 MNIRETFESKVSRALNNAREEAGSETEKSLKDLNNAVQMARSGSKGSTINISQMTAIVGQ 788
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EF+FHAMGGREGLIDT
Sbjct: 789 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFYFHAMGGREGLIDT 848
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 849 AVKTAET 855
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 70/91 (76%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++ K PS
Sbjct: 1077 AQANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPS 1136
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+TV+ D E AK + +EHT+LR V
Sbjct: 1137 MTVYQEPHRKHDKESAKQLRSVVEHTSLRSV 1167
>gi|408690948|gb|AFU81846.1| RNA polymerase II subunit 1, partial [Neonectria galligena]
Length = 535
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|406700979|gb|EKD04138.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 8904]
Length = 1771
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 104/128 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++T E V+ LN ARD G +A+ +L NN+K MVV+G+KGS INISQ+ CVGQ
Sbjct: 715 MTIRETLEAAVSGELNKARDWAGKTAQDNLKADNNVKQMVVSGAKGSFINISQMSGCVGQ 774
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGFR RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 775 QIVEGKRIPFGFRHRTLPHFSKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 834
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 835 AVKTAETG 842
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACN-AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D ET N A A EMVG LAAQS+GEPATQMTLNTFH+AGVSSK+VT GVPRLK
Sbjct: 1050 DWVCGEIETLFNRAIVAAAEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKSVTGGVPRLK 1109
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
EIIN++ + P+ V+L + +R A + +L +T LR V
Sbjct: 1110 EIINVATNIRTPATNVYLDPEYSRTERDAHQISRKLTYTRLRDV 1153
>gi|306413051|gb|ADM86623.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_16b KOD-2010]
Length = 532
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|302835796|ref|XP_002949459.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f.
nagariensis]
gi|300265286|gb|EFJ49478.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f.
nagariensis]
Length = 1879
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 90/125 (72%), Positives = 102/125 (81%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ ++FE QVN++LN RD G +A S+ NN+ MV AGSKGSNINISQ++ CVGQQN
Sbjct: 733 IHESFEAQVNQVLNKCRDDAGKAAYMSVDLSNNIIKMVTAGSKGSNINISQMMGCVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHF KDD GPE+RGFV NSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFQNRTLPHFNKDDLGPEARGFVGNSYLRGLTPQEFFFHAMGGREGLIDTAV 852
Query: 124 KTAET 128
KTA T
Sbjct: 853 KTAST 857
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 67/88 (76%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PG+ VG +AAQSLGEP TQMTLNTFHFAGVS+KNVTLGVPRL E+IN++K K P+LTV
Sbjct: 1085 PGDCVGTVAAQSLGEPTTQMTLNTFHFAGVSAKNVTLGVPRLTELINLAKNIKTPTLTVH 1144
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKVL 223
L + ++AK V +LE+T + V+
Sbjct: 1145 LLPGLRENKDRAKEVQAKLEYTCFKNVV 1172
>gi|408690946|gb|AFU81845.1| RNA polymerase II subunit 1, partial [Neonectria coccinea]
Length = 535
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|408690996|gb|AFU81870.1| RNA polymerase II subunit 1, partial [Cylindrocarpon cylindroides]
Length = 535
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|408690966|gb|AFU81855.1| RNA polymerase II subunit 1, partial [Nectria ventricosa]
Length = 535
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|408691000|gb|AFU81872.1| RNA polymerase II subunit 1, partial [Fusarium sp. KOD-2012e]
Length = 535
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|408690994|gb|AFU81869.1| RNA polymerase II subunit 1, partial [Geejayessia zealandica]
Length = 535
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|354803900|gb|AER40914.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
solani]
Length = 531
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 165 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 224
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 225 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 284
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 285 AVKTAET 291
>gi|408690990|gb|AFU81867.1| RNA polymerase II subunit 1, partial [Geejayessia atrofusca]
Length = 535
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|306413045|gb|ADM86620.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_18a KOD-2010]
Length = 536
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|408691062|gb|AFU81903.1| RNA polymerase II subunit 1, partial [Fusarium sp. (FIESC 15-a)]
Length = 525
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 159 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 218
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 219 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 278
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 279 AVKTAET 285
>gi|354803958|gb|AER40943.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
solani]
Length = 531
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 165 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 224
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 225 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 284
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 285 AVKTAET 291
>gi|354803890|gb|AER40909.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
solani]
Length = 531
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 165 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 224
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 225 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 284
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 285 AVKTAET 291
>gi|306413125|gb|ADM86660.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_6a KOD-2010]
Length = 536
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|306413099|gb|ADM86647.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_6a KOD-2010]
Length = 536
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|354803932|gb|AER40930.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
solani]
Length = 531
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 165 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 224
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 225 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 284
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 285 AVKTAET 291
>gi|116182152|ref|XP_001220925.1| DNA-directed RNA polymerase II largest subunit [Chaetomium globosum
CBS 148.51]
gi|88186001|gb|EAQ93469.1| DNA-directed RNA polymerase II largest subunit [Chaetomium globosum
CBS 148.51]
Length = 1756
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 104/128 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFEN+V+ LN ARDK G S +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 722 MNIRETFENKVSTALNKARDKAGTSTEKSLKDLNNAVTMARSGSKGSAINISQMTALVGQ 781
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 782 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 841
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 842 AVKTAETG 849
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 193
APGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++K K PS+
Sbjct: 1075 VAPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKDIKTPSMV 1134
Query: 194 VFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
V+L + A E AK + +EHT+LR V
Sbjct: 1135 VYLDSENAT-QEDAKRMRNAVEHTSLRSV 1162
>gi|440554455|gb|AGC12167.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554457|gb|AGC12168.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554459|gb|AGC12169.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554461|gb|AGC12170.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554463|gb|AGC12171.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554465|gb|AGC12172.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554467|gb|AGC12173.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554469|gb|AGC12174.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554471|gb|AGC12175.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554473|gb|AGC12176.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554475|gb|AGC12177.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554477|gb|AGC12178.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554479|gb|AGC12179.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554481|gb|AGC12180.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554483|gb|AGC12181.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554485|gb|AGC12182.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554487|gb|AGC12183.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554489|gb|AGC12184.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554491|gb|AGC12185.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554493|gb|AGC12186.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554495|gb|AGC12187.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554497|gb|AGC12188.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554499|gb|AGC12189.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554501|gb|AGC12190.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554503|gb|AGC12191.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554505|gb|AGC12192.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554507|gb|AGC12193.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554509|gb|AGC12194.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554511|gb|AGC12195.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554513|gb|AGC12196.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554515|gb|AGC12197.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554517|gb|AGC12198.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554519|gb|AGC12199.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554521|gb|AGC12200.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554523|gb|AGC12201.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554525|gb|AGC12202.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554527|gb|AGC12203.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554529|gb|AGC12204.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554531|gb|AGC12205.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554533|gb|AGC12206.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554535|gb|AGC12207.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554537|gb|AGC12208.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554539|gb|AGC12209.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554541|gb|AGC12210.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554543|gb|AGC12211.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554545|gb|AGC12212.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554547|gb|AGC12213.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554549|gb|AGC12214.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554551|gb|AGC12215.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554553|gb|AGC12216.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554555|gb|AGC12217.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554557|gb|AGC12218.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554559|gb|AGC12219.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554561|gb|AGC12220.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554563|gb|AGC12221.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554565|gb|AGC12222.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554567|gb|AGC12223.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554569|gb|AGC12224.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554571|gb|AGC12225.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554573|gb|AGC12226.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554575|gb|AGC12227.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554577|gb|AGC12228.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554579|gb|AGC12229.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554581|gb|AGC12230.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554583|gb|AGC12231.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554585|gb|AGC12232.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554587|gb|AGC12233.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554589|gb|AGC12234.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554591|gb|AGC12235.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554593|gb|AGC12236.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554595|gb|AGC12237.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554597|gb|AGC12238.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554599|gb|AGC12239.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554601|gb|AGC12240.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554603|gb|AGC12241.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554605|gb|AGC12242.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554607|gb|AGC12243.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554609|gb|AGC12244.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554611|gb|AGC12245.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554613|gb|AGC12246.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554615|gb|AGC12247.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554617|gb|AGC12248.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554619|gb|AGC12249.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554621|gb|AGC12250.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554623|gb|AGC12251.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554625|gb|AGC12252.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554627|gb|AGC12253.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554629|gb|AGC12254.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554631|gb|AGC12255.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554633|gb|AGC12256.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554635|gb|AGC12257.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554637|gb|AGC12258.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554639|gb|AGC12259.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554641|gb|AGC12260.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554643|gb|AGC12261.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554645|gb|AGC12262.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554647|gb|AGC12263.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554649|gb|AGC12264.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554651|gb|AGC12265.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554653|gb|AGC12266.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554655|gb|AGC12267.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554657|gb|AGC12268.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554659|gb|AGC12269.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554661|gb|AGC12270.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554663|gb|AGC12271.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554665|gb|AGC12272.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554667|gb|AGC12273.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554669|gb|AGC12274.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554671|gb|AGC12275.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554673|gb|AGC12276.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554675|gb|AGC12277.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
gi|440554677|gb|AGC12278.1| RPB1, partial [Fusarium sp. FD31 AE-2012]
Length = 512
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 166 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 225
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 226 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 285
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 286 AVKTAET 292
>gi|401881990|gb|EJT46265.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 2479]
Length = 1787
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 104/128 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++T E V+ LN ARD G +A+ +L NN+K MVV+G+KGS INISQ+ CVGQ
Sbjct: 715 MTIRETLEAAVSGELNKARDWAGKTAQDNLKADNNVKQMVVSGAKGSFINISQMSGCVGQ 774
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGFR RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 775 QIVEGKRIPFGFRHRTLPHFSKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 834
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 835 AVKTAETG 842
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 120 DTAVKTAETACN-AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
D ET N A A EMVG LAAQS+GEPATQMTLNTFH+AGVSSK+VT GVPRLK
Sbjct: 1050 DWVCGEIETLFNRAIVAAAEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKSVTGGVPRLK 1109
Query: 179 EIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
EIIN++ + P+ V+L + +R A + +L +T LR V
Sbjct: 1110 EIINVATNIRTPATNVYLDPEYSRTERDAHQISRKLTYTRLRDV 1153
>gi|408690974|gb|AFU81859.1| RNA polymerase II subunit 1, partial [Nectria illudens]
Length = 535
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|408690896|gb|AFU81820.1| RNA polymerase II subunit 1, partial [Fusarium buharicum]
Length = 535
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|354803952|gb|AER40940.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
solani]
gi|354803966|gb|AER40947.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
solani]
Length = 531
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 165 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 224
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 225 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 284
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 285 AVKTAET 291
>gi|306413067|gb|ADM86631.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_7a KOD-2010]
Length = 536
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|306413035|gb|ADM86615.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_29a KOD-2010]
gi|306413041|gb|ADM86618.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_26a KOD-2010]
gi|306413043|gb|ADM86619.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_1a KOD-2010]
gi|306413053|gb|ADM86624.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_28a KOD-2010]
gi|306413089|gb|ADM86642.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_27a KOD-2010]
Length = 536
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|408691094|gb|AFU81919.1| RNA polymerase II subunit 1, partial [Fusarium sp. KOD-2012h]
gi|409694247|gb|AFV36996.1| RPB1, partial [Fusarium sp. KOD-2012h]
gi|409694249|gb|AFV36997.1| RPB1, partial [Fusarium sp. KOD-2012h]
gi|409694251|gb|AFV36998.1| RPB1, partial [Fusarium sp. KOD-2012h]
gi|409694253|gb|AFV36999.1| RPB1, partial [Fusarium sp. KOD-2012h]
gi|409694255|gb|AFV37000.1| RPB1, partial [Fusarium sp. KOD-2012h]
Length = 535
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|306413049|gb|ADM86622.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_12d KOD-2010]
Length = 536
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|50289967|ref|XP_447415.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526725|emb|CAG60352.1| unnamed protein product [Candida glabrata]
Length = 1715
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARD+ G A+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRFLNEARDRAGRLAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIGFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 71/87 (81%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 1119
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + + D EKAK V +EHTTL+ V
Sbjct: 1120 LEPEYSADQEKAKLVRSAIEHTTLKSV 1146
>gi|408690900|gb|AFU81822.1| RNA polymerase II subunit 1, partial [Fusarium sublunatum]
Length = 535
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|306413131|gb|ADM86663.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_34a KOD-2010]
Length = 529
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 163 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 222
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 223 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 282
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 283 AVKTAET 289
>gi|375273642|gb|AFA43713.1| RPB1, partial [Fusarium sp. NRRL 54722]
gi|375273644|gb|AFA43714.1| RPB1, partial [Fusarium sp. NRRL 54723]
gi|375273646|gb|AFA43715.1| RPB1, partial [Fusarium sp. NRRL 54724]
gi|375273648|gb|AFA43716.1| RPB1, partial [Fusarium sp. NRRL 54725]
gi|375273650|gb|AFA43717.1| RPB1, partial [Fusarium sp. NRRL 54726]
gi|375273652|gb|AFA43718.1| RPB1, partial [Fusarium sp. NRRL 54727]
gi|375273654|gb|AFA43719.1| RPB1, partial [Fusarium sp. NRRL 54728]
Length = 529
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|120561199|gb|ABM26985.1| RNA polymerase II largest subunit, partial [Trichophyton rubrum]
Length = 1015
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G + +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 646 MNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQ 705
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 706 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 765
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 766 AVKTAETG 773
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 18/22 (81%)
Query: 132 AKCAPGEMVGALAAQSLGEPAT 153
A PGEMVG LAAQS+GEPAT
Sbjct: 994 AAANPGEMVGVLAAQSIGEPAT 1015
>gi|306413081|gb|ADM86638.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_5a KOD-2010]
Length = 536
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|408690960|gb|AFU81852.1| RNA polymerase II subunit 1, partial [Fusarium equiseti]
Length = 535
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|306413115|gb|ADM86655.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_13a KOD-2010]
Length = 536
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|408690938|gb|AFU81841.1| RNA polymerase II subunit 1, partial [Fusarium ambrosium]
Length = 535
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|306413017|gb|ADM86606.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_14a KOD-2010]
Length = 536
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|306413047|gb|ADM86621.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_25a KOD-2010]
Length = 536
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|336276273|ref|XP_003352890.1| hypothetical protein SMAC_05005 [Sordaria macrospora k-hell]
gi|380093009|emb|CCC09246.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1761
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFEN+V++ LN ARDK G + + SL + NN M ++GSKGS+INISQ+ A VGQ
Sbjct: 722 MNIRETFENKVSKALNTARDKAGTTTEGSLKDLNNAVTMALSGSKGSSINISQMTALVGQ 781
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 782 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 841
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 842 AVKTAETG 849
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 193
+PGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++ K PS+
Sbjct: 1076 VSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVASNIKTPSMM 1135
Query: 194 VFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
V+L AA E+AK + +EHT+LR V
Sbjct: 1136 VYLDSNAAT-QEEAKKMRSAVEHTSLRSV 1163
>gi|429851276|gb|ELA26479.1| DNA-dependent RNA polymerase ii largest [Colletotrichum
gloeosporioides Nara gc5]
Length = 1754
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V++ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 721 MNIRETFESKVSKALNTARDKAGTTTQKSLKDLNNAVTMASSGSKGSSINISQMTALVGQ 780
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 781 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 840
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 841 AVKTAET 847
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/115 (56%), Positives = 79/115 (68%), Gaps = 10/115 (8%)
Query: 108 FFHAMGGREGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSS 167
F H +G E D A +PGEMVG +AAQS+GEPATQMTLNTFHFAGVSS
Sbjct: 1057 FEHVLGELEARWDRAF----------VSPGEMVGVIAAQSIGEPATQMTLNTFHFAGVSS 1106
Query: 168 KNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
KNVTLGVPRLKEI+N+++ K PS+ V+L+G+ E AK + +EHTTLR V
Sbjct: 1107 KNVTLGVPRLKEILNLAQNIKTPSMVVYLSGEENASQEAAKALRSTVEHTTLRSV 1161
>gi|408690932|gb|AFU81838.1| RNA polymerase II subunit 1, partial [Fusarium lacertarum]
Length = 535
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|306413117|gb|ADM86656.1| DNA-directed RNA polymerase II largest subunit [Fusarium equiseti]
Length = 536
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|306413013|gb|ADM86604.1| DNA-directed RNA polymerase II largest subunit [Fusarium
lacertarum]
gi|306413121|gb|ADM86658.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_1a KOD-2010]
Length = 536
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|408690902|gb|AFU81823.1| RNA polymerase II subunit 1, partial [Fusarium equiseti]
Length = 535
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|354803870|gb|AER40899.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 25529]
gi|354803872|gb|AER40900.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 25531]
gi|354803874|gb|AER40901.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 25533]
gi|354803944|gb|AER40936.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52759]
Length = 531
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 165 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 224
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 225 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 284
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 285 AVKTAET 291
>gi|306413039|gb|ADM86617.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_3b KOD-2010]
Length = 528
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 162 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 221
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 222 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 281
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 282 AVKTAET 288
>gi|306413037|gb|ADM86616.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_15a KOD-2010]
Length = 536
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|221486415|gb|EEE24676.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii GT1]
gi|221508191|gb|EEE33778.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii VEG]
Length = 1892
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 88/127 (69%), Positives = 108/127 (85%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+L+++FE +VN+ LN AR+++G A +SL E NN+ AMV+AGSKGS INISQ++ACVGQQ
Sbjct: 735 SLRESFEARVNKELNSARERSGKVAAESLDESNNIMAMVLAGSKGSTINISQIMACVGQQ 794
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF +R+LPHF K DY P+SRGFVENSYL+GL P E FFHAMGGREG+IDTA
Sbjct: 795 NVEGKRIPFGFNERSLPHFHKFDYSPQSRGFVENSYLSGLEPHELFFHAMGGREGIIDTA 854
Query: 123 VKTAETA 129
KT+ET
Sbjct: 855 CKTSETG 861
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 74/89 (83%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFL 196
GE VGA+AAQS+GEPATQMTLNTFHFAGV SKNVTLGVPRLKE+IN++K+ K PSLTV+L
Sbjct: 1091 GECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKQVKTPSLTVYL 1150
Query: 197 TGQAARDAEKAKNVLCRLEHTTLRKVLYI 225
+ A D E+AK+V LEHTTL +V +
Sbjct: 1151 QDEIAMDQERAKDVQTHLEHTTLDRVTVV 1179
>gi|83320448|gb|ABC02851.1| RNA polymerase II largest subunit, partial [Rhopalomyces elegans]
Length = 792
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 105/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L++TFE +VNR LN AR+ G SA+ SL NN+K MV AGSKG+ +NI Q+ ACVGQ
Sbjct: 643 MTLRETFEYKVNRELNRARENAGKSAQSSLRRNNNVKLMVTAGSKGNYLNICQMTACVGQ 702
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF+ RTLPHF KDD+ P SRGFV+NSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 703 QNVEGKRIPFGFQYRTLPHFTKDDHTPASRGFVDNSYLRGLTPTEFFFHAMSGREGLIDT 762
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 763 AVKTAETG 770
>gi|408691080|gb|AFU81912.1| RNA polymerase II subunit 1, partial [Fusarium falciforme]
Length = 535
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|354803866|gb|AER40897.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 25124]
Length = 531
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 165 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 224
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 225 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 284
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 285 AVKTAET 291
>gi|365981561|ref|XP_003667614.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
gi|343766380|emb|CCD22371.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
Length = 1729
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRFLNEARDKAGRLAEMNLNDLNNVKQMVSAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI +GF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIGYGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 1119
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + D EKAK + +EHTTL+ +
Sbjct: 1120 LKDDYSSDQEKAKFIRSAIEHTTLKSI 1146
>gi|409694239|gb|AFV36992.1| RPB1, partial [Fusarium solani f. robiniae]
Length = 535
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|408691038|gb|AFU81891.1| RNA polymerase II subunit 1, partial [Nectria ventricosa]
Length = 535
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|408690908|gb|AFU81826.1| RNA polymerase II subunit 1, partial [Fusarium concolor]
Length = 535
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|409694241|gb|AFV36993.1| RPB1, partial [Fusarium solani f. xanthoxyli]
Length = 535
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|408691084|gb|AFU81914.1| RNA polymerase II subunit 1, partial [Nectria haematococca mpVI]
gi|409694243|gb|AFV36994.1| RPB1, partial [Fusarium solani f. mori]
Length = 535
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|354803956|gb|AER40942.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52777]
Length = 531
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 165 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 224
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 225 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 284
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 285 AVKTAET 291
>gi|354803852|gb|AER40890.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
pseudocircinatum]
gi|354803858|gb|AER40893.1| DNA-directed RNA polymerase II largest subunit, partial [Gibberella
moniliformis]
gi|354803892|gb|AER40910.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
nygamai]
gi|354803922|gb|AER40925.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
oxysporum]
gi|354803924|gb|AER40926.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
oxysporum]
gi|354803936|gb|AER40932.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
oxysporum]
gi|354803938|gb|AER40933.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
oxysporum]
gi|354803940|gb|AER40934.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
oxysporum]
gi|354803946|gb|AER40937.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
oxysporum]
gi|354803970|gb|AER40949.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52793]
Length = 531
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 165 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 224
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 225 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 284
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 285 AVKTAET 291
>gi|306413103|gb|ADM86649.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_7a KOD-2010]
Length = 536
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|306413057|gb|ADM86626.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_9a KOD-2010]
gi|306413091|gb|ADM86643.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_2a KOD-2010]
Length = 536
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|237833803|ref|XP_002366199.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii ME49]
gi|211963863|gb|EEA99058.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii ME49]
Length = 1892
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/127 (69%), Positives = 108/127 (85%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+L+++FE +VN+ LN AR+++G A +SL E NN+ AMV+AGSKGS INISQ++ACVGQQ
Sbjct: 735 SLRESFEARVNKELNSARERSGKVAAESLDESNNIMAMVLAGSKGSTINISQIMACVGQQ 794
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF +R+LPHF K DY P+SRGFVENSYL+GL P E FFHAMGGREG+IDTA
Sbjct: 795 NVEGKRIPFGFNERSLPHFHKFDYSPQSRGFVENSYLSGLEPHELFFHAMGGREGIIDTA 854
Query: 123 VKTAETA 129
KT+ET
Sbjct: 855 CKTSETG 861
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 74/89 (83%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFL 196
GE VGA+AAQS+GEPATQMTLNTFHFAGV SKNVTLGVPRLKE+IN++K+ K PSLTV+L
Sbjct: 1091 GECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKQVKTPSLTVYL 1150
Query: 197 TGQAARDAEKAKNVLCRLEHTTLRKVLYI 225
+ A D E+AK+V LEHTTL +V +
Sbjct: 1151 QDEIAMDQERAKDVQTHLEHTTLDRVTVV 1179
>gi|408691010|gb|AFU81877.1| RNA polymerase II subunit 1, partial [Fusarium beomiforme]
Length = 535
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|401409792|ref|XP_003884344.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
caninum Liverpool]
gi|325118762|emb|CBZ54313.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
caninum Liverpool]
Length = 1901
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/127 (69%), Positives = 108/127 (85%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+L+++FE +VN+ LN AR+++G A +SL E NN+ AMV+AGSKGS INISQ++ACVGQQ
Sbjct: 735 SLRESFEARVNKELNSARERSGKVAAESLDESNNIMAMVLAGSKGSTINISQIMACVGQQ 794
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF +R+LPHF K DY P+SRGFVENSYL+GL P E FFHAMGGREG+IDTA
Sbjct: 795 NVEGKRIPFGFNERSLPHFHKFDYSPQSRGFVENSYLSGLEPHELFFHAMGGREGIIDTA 854
Query: 123 VKTAETA 129
KT+ET
Sbjct: 855 CKTSETG 861
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 74/89 (83%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFL 196
GE VGA+AAQS+GEPATQMTLNTFHFAGV SKNVTLGVPRLKE+IN++K+ K PSLTV+L
Sbjct: 1091 GECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKQVKTPSLTVYL 1150
Query: 197 TGQAARDAEKAKNVLCRLEHTTLRKVLYI 225
+ A D E+AK+V LEHTTL +V +
Sbjct: 1151 QDEIAMDQERAKDVQTHLEHTTLDRVTVV 1179
>gi|306413133|gb|ADM86664.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_35a KOD-2010]
Length = 524
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 158 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 217
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 218 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 277
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 278 AVKTAET 284
>gi|306413097|gb|ADM86646.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_5a KOD-2010]
Length = 536
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|306413065|gb|ADM86630.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_25c KOD-2010]
Length = 536
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|254571371|ref|XP_002492795.1| RNA polymerase II largest subunit B220 [Komagataella pastoris
GS115]
gi|238032593|emb|CAY70616.1| RNA polymerase II largest subunit B220 [Komagataella pastoris
GS115]
gi|328353197|emb|CCA39595.1| DNA-directed RNA polymerase II subunit A [Komagataella pastoris CBS
7435]
Length = 1743
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 105/127 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE +V+R LNDARD G SA+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 709 MTLRESFEGEVSRTLNDARDSAGRSAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQ 768
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRI FGF R+LPHF KDD+ PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 769 QMVEGKRIAFGFADRSLPHFTKDDFSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 828
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 829 AVKTAET 835
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 73/87 (83%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG +AAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K P+LTV+
Sbjct: 1062 PGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVY 1121
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + A D EKAK + +E+TTL+ V
Sbjct: 1122 LDREIALDIEKAKVIQSSIEYTTLKNV 1148
>gi|354803934|gb|AER40931.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52747]
gi|354803960|gb|AER40944.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52784]
gi|354803972|gb|AER40950.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52796]
Length = 531
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 165 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 224
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 225 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 284
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 285 AVKTAET 291
>gi|306413029|gb|ADM86612.1| DNA-directed RNA polymerase II largest subunit [Fusarium concolor]
Length = 536
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|408691082|gb|AFU81913.1| RNA polymerase II subunit 1, partial [Fusarium gaditjirri]
gi|408691096|gb|AFU81920.1| RNA polymerase II subunit 1, partial [Fusarium lyarnte]
Length = 535
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|306413093|gb|ADM86644.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_3_4a KOD-2010]
Length = 536
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|306413063|gb|ADM86629.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_23a KOD-2010]
gi|306413069|gb|ADM86632.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_22a KOD-2010]
Length = 536
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|408691032|gb|AFU81888.1| RNA polymerase II subunit 1, partial [Gibberella xylarioides]
Length = 534
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|408691016|gb|AFU81880.1| RNA polymerase II subunit 1, partial [Fusarium mangiferae]
Length = 534
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|408690936|gb|AFU81840.1| RNA polymerase II subunit 1, partial [Fusarium inflexum]
Length = 534
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|306413135|gb|ADM86665.1| DNA-directed RNA polymerase II largest subunit [Fusarium ananatum]
Length = 536
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|306413061|gb|ADM86628.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_21b KOD-2010]
gi|306413075|gb|ADM86635.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_24a KOD-2010]
gi|306413119|gb|ADM86657.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_19a KOD-2010]
Length = 536
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|408691042|gb|AFU81893.1| RNA polymerase II subunit 1, partial [Fusarium sp. (FIESC 26-a)]
Length = 535
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|408690934|gb|AFU81839.1| RNA polymerase II subunit 1, partial [Gibberella stilboides]
Length = 527
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|322517859|gb|ADX06846.1| DNA-directed RNA polymerase II largest subunit [Fusarium
falciforme]
Length = 525
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|397135838|gb|AFO11414.1| RNA polymerase I, partial [Naumovozyma dairenensis]
Length = 871
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 521 MTLRESFEDNVVRFLNEARDKAGRLAEMNLNDLNNVKQMVSAGSKGSFINIAQMSACVGQ 580
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI +GF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 581 QSVEGKRIGYGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 640
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 641 AVKTAETG 648
>gi|354803930|gb|AER40929.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
commune]
gi|354803948|gb|AER40938.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
commune]
Length = 531
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 165 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 224
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 225 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 284
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 285 AVKTAET 291
>gi|306413019|gb|ADM86607.1| DNA-directed RNA polymerase II largest subunit [Fusarium
lateritium]
Length = 536
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|408690972|gb|AFU81858.1| RNA polymerase II subunit 1, partial [Fusarium thapsinum]
Length = 510
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|354803896|gb|AER40912.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52711]
Length = 531
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 165 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 224
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 225 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 284
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 285 AVKTAET 291
>gi|354803850|gb|AER40889.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
proliferatum]
gi|354803854|gb|AER40891.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
proliferatum]
gi|354803902|gb|AER40915.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
proliferatum]
gi|354803928|gb|AER40928.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
proliferatum]
Length = 531
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 165 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 224
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 225 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 284
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 285 AVKTAET 291
>gi|408690918|gb|AFU81831.1| RNA polymerase II subunit 1, partial [Fusarium cf. compactum NRRL
13829]
Length = 521
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|354803954|gb|AER40941.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52774]
Length = 531
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 165 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 224
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 225 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 284
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 285 AVKTAET 291
>gi|306413055|gb|ADM86625.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_18b KOD-2010]
gi|306413059|gb|ADM86627.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_17a KOD-2010]
gi|306413071|gb|ADM86633.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_20a KOD-2010]
gi|306413073|gb|ADM86634.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_16a KOD-2010]
gi|306413077|gb|ADM86636.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_15a KOD-2010]
Length = 536
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|408691034|gb|AFU81889.1| RNA polymerase II subunit 1, partial [Fusarium sp. NRRL 25533]
gi|408691036|gb|AFU81890.1| RNA polymerase II subunit 1, partial [Fusarium babinda]
Length = 535
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|408691018|gb|AFU81881.1| RNA polymerase II subunit 1, partial [Fusarium circinatum]
Length = 534
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|408690912|gb|AFU81828.1| RNA polymerase II subunit 1, partial [Fusarium lateritium]
Length = 535
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|354803918|gb|AER40923.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sacchari]
gi|354803920|gb|AER40924.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sacchari]
gi|354803926|gb|AER40927.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sacchari]
Length = 531
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 165 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 224
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 225 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 284
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 285 AVKTAET 291
>gi|306413127|gb|ADM86661.1| DNA-directed RNA polymerase II largest subunit [Fusarium sacchari]
Length = 527
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 161 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 220
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 221 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 280
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 281 AVKTAET 287
>gi|4001824|gb|AAD12604.1| largest subunit of RNA polymerase II [Vairimorpha necatrix]
Length = 1605
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/128 (69%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
++++++FE+QVN ILN RD +G SA KSL+ NN++ MV+AGSKGS INISQV AC+GQ
Sbjct: 710 MSMRESFESQVNYILNKPRDISGASASKSLSFCNNMRTMVLAGSKGSFINISQVTACLGQ 769
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF R+LPHF K DY +SRGFVENSY+ G+TP EFFFHAMGGREGLID
Sbjct: 770 QNVEGKRIPFGFNYRSLPHFSKADYSGKSRGFVENSYVKGITPEEFFFHAMGGREGLIDI 829
Query: 122 AVKTAETA 129
A+KTAET
Sbjct: 830 AIKTAETG 837
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 64/88 (72%), Gaps = 1/88 (1%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
+P EMVG LAAQS+GEPATQMTLNTFH AGVS+ N+T+GVPRLKEIIN++K K P + +
Sbjct: 1044 SPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSA-NITMGVPRLKEIINVAKNIKTPCMKI 1102
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+L + E AK + LE + ++ +
Sbjct: 1103 YLKDPFNKTLEMAKKIQSELEFSDIKSL 1130
>gi|408691008|gb|AFU81876.1| RNA polymerase II subunit 1, partial [Fusarium guttiforme]
Length = 535
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|408690892|gb|AFU81818.1| RNA polymerase II subunit 1, partial [Fusarium sp. (FCSC 4-a)]
gi|408690906|gb|AFU81825.1| RNA polymerase II subunit 1, partial [Fusarium sp. (FCSC 2-a)]
gi|408691050|gb|AFU81897.1| RNA polymerase II subunit 1, partial [Fusarium sp. (FCSC 1-a)]
Length = 535
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|306413101|gb|ADM86648.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_8b KOD-2010]
Length = 523
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 157 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 216
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 217 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 276
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 277 AVKTAET 283
>gi|306413083|gb|ADM86639.1| DNA-directed RNA polymerase II largest subunit [Fusarium
brachygibbosum]
Length = 536
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|408691012|gb|AFU81878.1| RNA polymerase II subunit 1, partial [Fusarium nisikadoi]
gi|408691040|gb|AFU81892.1| RNA polymerase II subunit 1, partial [Fusarium miscanthi]
Length = 535
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|408690988|gb|AFU81866.1| RNA polymerase II subunit 1, partial [Fusarium phaseoli]
gi|408691058|gb|AFU81901.1| RNA polymerase II subunit 1, partial [Fusarium virguliforme]
Length = 535
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|408690920|gb|AFU81832.1| RNA polymerase II subunit 1, partial [Nectria ventricosa]
Length = 520
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|226876267|gb|ACO89454.1| RNA polymerase II largest subunit, partial [Shanorella spirotricha]
Length = 847
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +++TFE++V+R LN+ARD+ G +KSL + NN M +GSKGS INISQ+ A VGQ
Sbjct: 635 MNVRETFESKVSRALNNARDEAGTETEKSLKDLNNAVQMARSGSKGSTINISQMTAVVGQ 694
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDT
Sbjct: 695 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 754
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 755 AVKTAETG 762
>gi|408691014|gb|AFU81879.1| RNA polymerase II subunit 1, partial [Fusarium sp. NRRL 25184]
Length = 535
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|408690942|gb|AFU81843.1| RNA polymerase II subunit 1, partial [Fusarium sarcochroum]
Length = 535
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 169 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 228
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 229 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 288
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 289 AVKTAET 295
>gi|306413107|gb|ADM86651.1| DNA-directed RNA polymerase II largest subunit [Fusarium fujikuroi]
Length = 536
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
>gi|306413079|gb|ADM86637.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FCSC_2a KOD-2010]
gi|306413111|gb|ADM86653.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FCSC_1b KOD-2010]
gi|306413113|gb|ADM86654.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FCSC_3a KOD-2010]
Length = 536
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ ++ TFEN+V+ LN ARDK G + +KSL + NN M +GSKGS+INISQ+ A VGQ
Sbjct: 170 MNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQ 229
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDDY PE+RGFVENSYL GLTPSEFFFHAM GREGLIDT
Sbjct: 230 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 289
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 290 AVKTAET 296
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,851,117,804
Number of Sequences: 23463169
Number of extensions: 152981741
Number of successful extensions: 355197
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8811
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 337766
Number of HSP's gapped (non-prelim): 16763
length of query: 258
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 119
effective length of database: 9,097,814,876
effective search space: 1082639970244
effective search space used: 1082639970244
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)