BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3022
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1 OS=Drosophila
melanogaster GN=RpII215 PE=3 SV=4
Length = 1887
Score = 257 bits (656), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 125/126 (99%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAETA 129
KTAET
Sbjct: 845 KTAETG 850
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1161
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
elegans GN=ama-1 PE=1 SV=3
Length = 1856
Score = 241 bits (615), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 111/126 (88%), Positives = 121/126 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VN+ILNDARD+TG SA+KSL+E+NN K+MVV+GSKGS INISQVIACVGQQN
Sbjct: 727 LRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 846
Query: 124 KTAETA 129
KTAET
Sbjct: 847 KTAETG 852
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/91 (83%), Positives = 83/91 (91%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK K PS
Sbjct: 1073 AIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPS 1132
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AA+D EKAK+VLC+LEHTTL+KV
Sbjct: 1133 LTVFLTGAAAKDPEKAKDVLCKLEHTTLKKV 1163
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
briggsae GN=rpb-1 PE=3 SV=2
Length = 1853
Score = 241 bits (615), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 111/126 (88%), Positives = 121/126 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VN+ILNDARD+TG SA+KSL+E+NN K+MVV+GSKGS INISQVIACVGQQN
Sbjct: 727 LRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 846
Query: 124 KTAETA 129
KTAET
Sbjct: 847 KTAETG 852
Score = 157 bits (396), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 76/91 (83%), Positives = 84/91 (92%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK+ K PS
Sbjct: 1073 AIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPS 1132
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AA+D EKAK+VLC+LEHTTL+KV
Sbjct: 1133 LTVFLTGAAAKDPEKAKDVLCKLEHTTLKKV 1163
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens
GN=POLR2A PE=1 SV=2
Length = 1970
Score = 241 bits (614), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1142
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1143 LLGQSARDAERAKDILCRLEHTTLRKV 1169
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus
GN=Polr2a PE=1 SV=3
Length = 1970
Score = 241 bits (614), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAETA 129
KTAET
Sbjct: 853 KTAETG 858
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVF
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF 1142
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1143 LLGQSARDAERAKDILCRLEHTTLRKV 1169
>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana
GN=RPB205 PE=1 SV=3
Length = 1839
Score = 218 bits (555), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 102/125 (81%), Positives = 110/125 (88%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
++ TFEN+VN++LN ARD G SA+KSL E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 729 MRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQN 788
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 789 VEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 848
Query: 124 KTAET 128
KT+ET
Sbjct: 849 KTSET 853
Score = 134 bits (337), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 77/88 (87%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K+ K PSL+V
Sbjct: 1079 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSV 1138
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+LT +A++ E AK V C LE+TTLR V
Sbjct: 1139 YLTPEASKSKEGAKTVQCALEYTTLRSV 1166
>sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium
discoideum GN=polr2a PE=2 SV=2
Length = 1727
Score = 215 bits (548), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/123 (81%), Positives = 110/123 (89%)
Query: 6 QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVE 65
+TFE +VN++LN ARD G SA+ SL+E NNLKAMV AGSKGS INISQ++ACVGQQNVE
Sbjct: 721 ETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQMMACVGQQNVE 780
Query: 66 GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 125
GKRIPFGF+ RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT
Sbjct: 781 GKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 840
Query: 126 AET 128
+ET
Sbjct: 841 SET 843
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 75/87 (86%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIINI+K+ K PSLT++
Sbjct: 1079 PGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQVKTPSLTIY 1138
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L ARD ++AK V +LE+TTL V
Sbjct: 1139 LKPHMARDMDRAKIVKSQLEYTTLANV 1165
>sp|Q8SSC4|RPB1_ENCCU DNA-directed RNA polymerase II subunit RPB1 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB1 PE=3 SV=1
Length = 1599
Score = 204 bits (519), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 110/128 (85%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ +K++FE+ +N +LN ARD +G SA++SL+E NN+K MV+AGSKGS INISQV ACVGQ
Sbjct: 702 MTMKESFESHLNLVLNRARDVSGTSAQRSLSENNNMKTMVLAGSKGSFINISQVTACVGQ 761
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNVEGKRIPFGF RTLPHF+KDDY +SRGFVENSYL GL P EFFFHAMGGREGLIDT
Sbjct: 762 QNVEGKRIPFGFSHRTLPHFVKDDYTGKSRGFVENSYLTGLDPEEFFFHAMGGREGLIDT 821
Query: 122 AVKTAETA 129
A+KTAET
Sbjct: 822 AIKTAETG 829
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
AK P EMVG LAAQS+GEPATQMTLNTFH AGV+S VT+GVPRLKEI N++K K PS
Sbjct: 1041 AKITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVAS-TVTMGVPRLKEIFNVTKNLKTPS 1099
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+ ++L + + E AK + +E T++ +
Sbjct: 1100 MKIYLDREHGKSIEAAKTIQNEIECLTVKDL 1130
>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb1 PE=1 SV=1
Length = 1752
Score = 197 bits (500), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 106/128 (82%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE +V+RILN ARD G SA+ SL + NN+K MV AGSKGS INISQ+ ACVGQ
Sbjct: 714 MTLRESFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQ 773
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDD PESRGF+ENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 774 QIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDT 833
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 834 AVKTAETG 841
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 74/91 (81%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A +PGEMVG LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K PS
Sbjct: 1059 AVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPS 1118
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LT++L A + + AKNV ++EHTTL V
Sbjct: 1119 LTIYLMPWIAANMDLAKNVQTQIEHTTLSTV 1149
>sp|Q75A34|RPB1_ASHGO DNA-directed RNA polymerase II subunit RPB1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB1 PE=3 SV=2
Length = 1745
Score = 196 bits (498), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G SA+ +L + NN+K MV AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 1119
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L A D EKAK + +EHTTL+ V
Sbjct: 1120 LEESYATDQEKAKLIRSAIEHTTLKSV 1146
>sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II subunit RPB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO21 PE=1
SV=2
Length = 1733
Score = 194 bits (494), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 107/128 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV+AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAETA 129
AVKTAET
Sbjct: 828 AVKTAETG 835
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 1119
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L A D E+AK + +EHTTL+ V
Sbjct: 1120 LEPGHAADQEQAKLIRSAIEHTTLKSV 1146
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium
falciparum (isolate CDC / Honduras) GN=RPII PE=3 SV=1
Length = 2452
Score = 174 bits (440), Expect = 8e-43, Method: Composition-based stats.
Identities = 89/127 (70%), Positives = 104/127 (81%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+L ++FE +VN LN AR+ G A +SL E NN+ +MV +GSKGS INISQ+I+CVGQQ
Sbjct: 869 SLYESFETRVNNELNCAREMAGKVASESLDERNNIFSMVASGSKGSIINISQIISCVGQQ 928
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
NVEGKRIPFGF R+LPHFIK DYGPESRGFV NSYL+GLTP E FFHAMGGREG+IDTA
Sbjct: 929 NVEGKRIPFGFNHRSLPHFIKFDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREGIIDTA 988
Query: 123 VKTAETA 129
KT+ET
Sbjct: 989 CKTSETG 995
Score = 132 bits (331), Expect = 3e-30, Method: Composition-based stats.
Identities = 65/101 (64%), Positives = 78/101 (77%), Gaps = 3/101 (2%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 193
C PGE VGALAAQS+GEPATQMTLNTFHFAGV SKNVTLGVPRLKE+INI K K PS T
Sbjct: 1399 CHPGECVGALAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINIVKNVKTPSTT 1458
Query: 194 VFLTGQAARDAEKAKNVLCRLEHTTLRKVL---YIILRPAT 231
++L + D +KAK++L +LE+TTL+++ II P T
Sbjct: 1459 IYLDDMVSNDQQKAKDILTKLEYTTLKQLTSHAQIIYDPNT 1499
>sp|A5DCV3|RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1 (Fragments)
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB1
PE=3 SV=2
Length = 1579
Score = 172 bits (435), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/120 (70%), Positives = 93/120 (77%)
Query: 10 NQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRI 69
+QV +L D G +L + NN+K MVV+GSKGS INISQ+ ACVGQQ VEGKRI
Sbjct: 548 DQVMNMLYWIPDWDGVIPPMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRI 607
Query: 70 PFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETA 129
PFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAET
Sbjct: 608 PFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 667
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 72/87 (82%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG +AAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K P+LTV+
Sbjct: 893 PGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVY 952
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L A D EKAK V +EHTTL+ V
Sbjct: 953 LEKDIAADIEKAKVVQSAIEHTTLKNV 979
>sp|P17546|RPB1A_TRYBB DNA-directed RNA polymerase II subunit RPB1-A OS=Trypanosoma brucei
brucei GN=TRP4.8 PE=1 SV=1
Length = 1766
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 88/127 (69%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L Q+FE VN LN R++ A ++ N+ K M+ AGSKG+++NI Q+ VGQ
Sbjct: 711 MTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQ 770
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNV G RIPFGFR+RTLPHF+ DDYG SRG Y+ GL P EFFFH M GREGLIDT
Sbjct: 771 QNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDT 830
Query: 122 AVKTAET 128
AVKT++T
Sbjct: 831 AVKTSDT 837
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 74/105 (70%), Gaps = 5/105 (4%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV- 194
PGE +GA+AAQS GEPATQMTLNTFH AG+SSKNVTLGVPRL E++N+S+ K S+TV
Sbjct: 1081 PGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELLNVSRNQKHASMTVS 1140
Query: 195 -FLTGQAARDAEKAKNVL--CRLEHTTLRKVLYIILRPATHYQVE 236
F R+A+KA++++ C LE T R++ +I H VE
Sbjct: 1141 LFPPYDEKRNAQKAQHLIEYCTLESIT-RRIQFIYDPDPRHTVVE 1184
>sp|P17545|RPB1B_TRYBB DNA-directed RNA polymerase II subunit RPB1-B OS=Trypanosoma brucei
brucei GN=TRP5.9 PE=1 SV=1
Length = 1766
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 88/127 (69%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L Q+FE VN LN R++ A ++ N+ K M+ AGSKG+++NI Q+ VGQ
Sbjct: 711 MTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQ 770
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
QNV G RIPFGFR+RTLPHF+ DDYG SRG Y+ GL P EFFFH M GREGLIDT
Sbjct: 771 QNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDT 830
Query: 122 AVKTAET 128
AVKT++T
Sbjct: 831 AVKTSDT 837
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 74/105 (70%), Gaps = 5/105 (4%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV- 194
PGE +GA+AAQS GEPATQMTLNTFH AG+SSKNVTLGVPRL E++N+S+ K S+TV
Sbjct: 1081 PGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELLNVSRNQKHASMTVS 1140
Query: 195 -FLTGQAARDAEKAKNVL--CRLEHTTLRKVLYIILRPATHYQVE 236
F R+A+KA++++ C LE T R++ +I H VE
Sbjct: 1141 LFPPYDEKRNAQKAQHLIEYCTLESIT-RRIQFIYDPDPRHTVVE 1184
>sp|Q86AQ5|RPC1_DICDI DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium
discoideum GN=polr3a PE=3 SV=1
Length = 1450
Score = 149 bits (375), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 88/127 (69%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+++QTFE ++N+ L+ RD G L YN+ M + GSKGSNINI+Q+I CVGQQ
Sbjct: 731 SMEQTFEAKMNQTLSQIRDDCGKLCVNDLPNYNSPLIMGLCGSKGSNINIAQMICCVGQQ 790
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
V G RIP GF RT PHF P+S+GFV NS+ G+ P+EFFFH MGGREGL+DTA
Sbjct: 791 IVNGTRIPNGFTNRTTPHFKHFAKNPKSKGFVSNSFYTGMIPTEFFFHTMGGREGLVDTA 850
Query: 123 VKTAETA 129
VKTAET
Sbjct: 851 VKTAETG 857
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 60/91 (65%), Gaps = 2/91 (2%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PG VGA+ AQS+GEP TQMTL TFHFAGV+S NVTLGVPR+KEIIN +K P
Sbjct: 1095 ARIEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKNISTPI 1154
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+T L D A+ V R+E TTL V
Sbjct: 1155 ITASL--NCDYDIRSARIVAGRIEKTTLGHV 1183
>sp|P08968|RPC1_TRYBB DNA-directed RNA polymerase III subunit RPC1 OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 1530
Score = 145 bits (366), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/128 (54%), Positives = 96/128 (75%), Gaps = 1/128 (0%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLK-AMVVAGSKGSNINISQVIACVG 60
L +KQ+ E ++N L+ RD+ G +A ++L+ +NN MV +GSKGS +NI+Q++ACVG
Sbjct: 743 LTVKQSLEARLNTELSKVRDECGTAAVQTLSIHNNTPLIMVQSGSKGSALNIAQMMACVG 802
Query: 61 QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
QQ V GKRI F+ R+LPHF + + P +RGFV NS+ +GL+P+EFFFH M GREGL+D
Sbjct: 803 QQTVSGKRILDAFQDRSLPHFHRFEEAPAARGFVANSFYSGLSPTEFFFHTMAGREGLVD 862
Query: 121 TAVKTAET 128
TAVKTAET
Sbjct: 863 TAVKTAET 870
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 63/100 (63%), Gaps = 6/100 (6%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 193
C PG GA+AAQS+GEP+TQMTL TFHFAGV+S ++T GVPRL E+IN ++ P +T
Sbjct: 1139 CEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQGVPRLVEVINANRNIATPVVT 1198
Query: 194 --VFLTGQAARDAE----KAKNVLCRLEHTTLRKVLYIIL 227
V L E +A+ V ++E LR+V+ I+
Sbjct: 1199 APVLLMEGEENHCEIFRKRARFVKAQIERVLLREVVSEIV 1238
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III subunit RPC1 OS=Plasmodium
falciparum PE=3 SV=1
Length = 2339
Score = 142 bits (359), Expect = 2e-33, Method: Composition-based stats.
Identities = 70/126 (55%), Positives = 88/126 (69%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L++T E +V IL+D R+ G + + L N M +G+KG+ INI+Q+IACVGQQN
Sbjct: 855 LEETLEIKVKSILDDLRNDAGKTCNQYLHYLNKPLIMFNSGAKGALINIAQMIACVGQQN 914
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
V G+RI GF RTLPHF ESRGFV+NS+ GL+P+EFFFH M GREGL+DTAV
Sbjct: 915 VAGQRIQNGFINRTLPHFHFHCKDSESRGFVQNSFYTGLSPTEFFFHTMSGREGLVDTAV 974
Query: 124 KTAETA 129
KTAET
Sbjct: 975 KTAETG 980
Score = 92.8 bits (229), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/91 (52%), Positives = 64/91 (70%), Gaps = 3/91 (3%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PG+ VG+++AQS+GEP TQMTL TFHFAGV+S NVTLGVPR+KEIIN S + P L +
Sbjct: 1779 PGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASNSIQTPILNIP 1838
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV-LYI 225
L + + A + +LE TT+R + +YI
Sbjct: 1839 L--EVNDNYNFALMMKSKLEKTTIRDICMYI 1867
>sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens
GN=POLR3A PE=1 SV=2
Length = 1390
Score = 140 bits (354), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 87/125 (69%)
Query: 5 KQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 64
++T E + + L+ RD G + + L + N+ M + GSKGS INISQ+IACVGQQ +
Sbjct: 745 EETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAI 804
Query: 65 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 124
G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M GREGL+DTAVK
Sbjct: 805 SGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVK 864
Query: 125 TAETA 129
TAET
Sbjct: 865 TAETG 869
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 79/143 (55%), Gaps = 16/143 (11%)
Query: 83 KDDYGPESRGFVENSYLAGL---TPSEFFFHAMGGREGLIDTAVKTAETACNAKCAPGEM 139
+D YG G E L L TP++ E ++T + A+ PG
Sbjct: 984 RDKYGINDNGTTEPRVLYQLDRITPTQV--------EKFLETC---RDKYMRAQMEPGSA 1032
Query: 140 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQ 199
VGAL AQS+GEP TQMTL TFHFAGV+S N+TLGVPR+KEIIN SK P +T L
Sbjct: 1033 VGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQL--D 1090
Query: 200 AARDAEKAKNVLCRLEHTTLRKV 222
DA+ A+ V R+E T L ++
Sbjct: 1091 KDDDADYARLVKGRIEKTLLGEI 1113
>sp|A4IF62|RPC1_BOVIN DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 140 bits (354), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 87/125 (69%)
Query: 5 KQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 64
++T E + + L+ RD G + + L + N+ M + GSKGS INISQ+IACVGQQ +
Sbjct: 745 EETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAI 804
Query: 65 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 124
G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M GREGL+DTAVK
Sbjct: 805 SGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVK 864
Query: 125 TAETA 129
TAET
Sbjct: 865 TAETG 869
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 79/143 (55%), Gaps = 16/143 (11%)
Query: 83 KDDYGPESRGFVENSYLAGL---TPSEFFFHAMGGREGLIDTAVKTAETACNAKCAPGEM 139
+D YG G E L L TP++ E ++T + A+ PG
Sbjct: 984 RDKYGINDNGTTEPRVLYQLDRITPTQI--------EKFLETC---RDKYMRAQMEPGSA 1032
Query: 140 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQ 199
VGAL AQS+GEP TQMTL TFHFAGV+S N+TLGVPR+KEIIN SK P +T L
Sbjct: 1033 VGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQL--D 1090
Query: 200 AARDAEKAKNVLCRLEHTTLRKV 222
DA+ A+ V R+E T L ++
Sbjct: 1091 KDDDADYARLVKGRIEKTLLGEI 1113
>sp|Q5ZL98|RPC1_CHICK DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 140 bits (354), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 87/125 (69%)
Query: 5 KQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 64
++T E + + L+ RD G + + L + N+ M + GSKGS INISQ+IACVGQQ +
Sbjct: 745 EETLEALILKELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAI 804
Query: 65 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 124
G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M GREGL+DTAVK
Sbjct: 805 SGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVK 864
Query: 125 TAETA 129
TAET
Sbjct: 865 TAETG 869
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 78/143 (54%), Gaps = 16/143 (11%)
Query: 83 KDDYGPESRGFVENSYLAGL---TPSEFFFHAMGGREGLIDTAVKTAETACNAKCAPGEM 139
+D YG G E L L TP++ E ++T + A+ PG
Sbjct: 984 RDKYGINDNGTTEPRVLYQLDRITPTQL--------EKFLETC---RDKYMRAQMEPGSA 1032
Query: 140 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQ 199
VGAL AQS+GEP TQMTL TFHFAGV+S N+TLGVPR+KEIIN SK P +T L
Sbjct: 1033 VGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQL--D 1090
Query: 200 AARDAEKAKNVLCRLEHTTLRKV 222
D + A+ V R+E T L ++
Sbjct: 1091 KDDDPDFARLVKGRIEKTLLGEI 1113
>sp|Q58445|RPOA1_METJA DNA-directed RNA polymerase subunit A' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoA1 PE=3 SV=2
Length = 1341
Score = 140 bits (353), Expect = 9e-33, Method: Composition-based stats.
Identities = 65/128 (50%), Positives = 92/128 (71%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
L L+++ E ++ +L +ARDK G A++ L N+ M V G++G+ +N++Q+ AC+GQ
Sbjct: 1150 LNLEESREAYISNVLREARDKAGAIAERYLGLDNHAVIMAVTGARGNILNLTQMAACLGQ 1209
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+V GKRI G+R R LPHF K D G S GFV +SY GL+P+EFFFHAMGGREGL+D
Sbjct: 1210 QSVRGKRIFRGYRGRVLPHFEKGDLGARSHGFVRSSYKKGLSPTEFFFHAMGGREGLVDQ 1269
Query: 122 AVKTAETA 129
AV+TA++
Sbjct: 1270 AVRTAQSG 1277
>sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc1 PE=2 SV=1
Length = 1405
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 85/122 (69%)
Query: 7 TFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEG 66
T E +++ L+ RD G L N+ M GSKGS IN+SQ++ACVGQQ + G
Sbjct: 741 TLEAKISSTLSKVRDDVGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQIISG 800
Query: 67 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 126
KR+P GF+ R+LPHF K+ P ++GFV NS+ +GLTP+EF FHA+ GREGL+DTAVKTA
Sbjct: 801 KRVPDGFQDRSLPHFHKNSKHPLAKGFVSNSFYSGLTPTEFLFHAISGREGLVDTAVKTA 860
Query: 127 ET 128
ET
Sbjct: 861 ET 862
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 69/115 (60%), Gaps = 10/115 (8%)
Query: 124 KTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI 183
+ E AK PG VGA+ AQS+GEP TQMTL TFHFAGV+++ TLGVPR+KEIIN
Sbjct: 1031 RCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAAQ-TTLGVPRIKEIINA 1089
Query: 184 SKKPKAPSLTVFLTGQA--ARDAEKAKNVLCRLEHTTLRKVL-YI--ILRPATHY 233
+K P +TGQ RD A+ V R+E T L+ V YI + P T Y
Sbjct: 1090 AKTISTP----IITGQLINDRDERSARVVKGRIEKTYLKDVTSYIEEVYGPVTTY 1140
>sp|O27125|RPOA1_METTH DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoA1 PE=3 SV=1
Length = 870
Score = 137 bits (345), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 93/128 (72%), Gaps = 1/128 (0%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLT-EYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+L++T E ++ ++L +ARDK+G A+ + N+ M + G++GS +N++Q+ ACVGQ
Sbjct: 679 SLEETLEMKIMQVLGEARDKSGEIAESYFDMDENHAVIMALTGARGSMLNLTQITACVGQ 738
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+V G RI G+ RTLPHF K + G +SRGFV +SY GL P EFFFHAMGGREGL+DT
Sbjct: 739 QSVRGGRISRGYDNRTLPHFKKGELGAKSRGFVHSSYKEGLDPIEFFFHAMGGREGLVDT 798
Query: 122 AVKTAETA 129
A++TA++
Sbjct: 799 AIRTAQSG 806
>sp|P04051|RPC1_YEAST DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO31 PE=1
SV=1
Length = 1460
Score = 137 bits (345), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 86/125 (68%)
Query: 5 KQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 64
+QT E ++ +L+ R++ G L +N M GSKGS +N+SQ++A VGQQ +
Sbjct: 759 EQTLEAKIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQII 818
Query: 65 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 124
G R+P GF+ R+LPHF K+ P+S+GFV NS+ +GL+P EF FHA+ GREGL+DTAVK
Sbjct: 819 SGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVK 878
Query: 125 TAETA 129
TAET
Sbjct: 879 TAETG 883
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PG +GA+ AQS+GEP TQMTL TFHFAGV+S NVTLGVPR+KEIIN SK P
Sbjct: 1081 ARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPI 1140
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVLYII 226
+ L D A+ V R+E T L V + +
Sbjct: 1141 INAVLVND--NDERAARVVKGRVEKTLLSDVAFYV 1173
>sp|P0CX02|RPOA1_HALSA DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoA1 PE=3
SV=1
Length = 971
Score = 136 bits (342), Expect = 2e-31, Method: Composition-based stats.
Identities = 62/126 (49%), Positives = 87/126 (69%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ +T E ++ + L ARD G A+++ E N M +G++GS +N++Q+ CVGQQ
Sbjct: 749 VDETLEMKIMQTLGKARDSAGDVAEENFDEDNPAVVMANSGARGSMLNLTQMAGCVGQQA 808
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
V G+RI G+ RTL HF +D E+ GFVENSY +GLTP EFFFHAMGGREGL+DTAV
Sbjct: 809 VRGERINRGYEDRTLSHFAPNDLSSEAHGFVENSYTSGLTPKEFFFHAMGGREGLVDTAV 868
Query: 124 KTAETA 129
+T+++
Sbjct: 869 RTSKSG 874
>sp|B0R8D4|RPOA1_HALS3 DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoA1 PE=1 SV=1
Length = 971
Score = 136 bits (342), Expect = 2e-31, Method: Composition-based stats.
Identities = 62/126 (49%), Positives = 87/126 (69%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ +T E ++ + L ARD G A+++ E N M +G++GS +N++Q+ CVGQQ
Sbjct: 749 VDETLEMKIMQTLGKARDSAGDVAEENFDEDNPAVVMANSGARGSMLNLTQMAGCVGQQA 808
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
V G+RI G+ RTL HF +D E+ GFVENSY +GLTP EFFFHAMGGREGL+DTAV
Sbjct: 809 VRGERINRGYEDRTLSHFAPNDLSSEAHGFVENSYTSGLTPKEFFFHAMGGREGLVDTAV 868
Query: 124 KTAETA 129
+T+++
Sbjct: 869 RTSKSG 874
>sp|Q6BI69|RPC1_DEBHA DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=RPC1 PE=3 SV=2
Length = 1457
Score = 134 bits (338), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 85/124 (68%)
Query: 5 KQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 64
+QT E ++ +L+ R++ G L N M GSKGS +N+SQ++A VGQQ +
Sbjct: 755 EQTLEAKIGGLLSKVREEVGEICINELDSANAPLIMATCGSKGSTLNVSQMVAVVGQQII 814
Query: 65 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 124
G R+P GF+ R+LPHF K+ P+S+GFV NS+ +GLTP EF FH++ GREGL+DTAVK
Sbjct: 815 SGNRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLTPPEFLFHSISGREGLVDTAVK 874
Query: 125 TAET 128
TAET
Sbjct: 875 TAET 878
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
AK PG VGA+ AQS+GEP TQMTL TFHFAGV+S NVTLGVPR+KEIIN SK P
Sbjct: 1073 AKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPI 1132
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVLYII 226
+ L D A+ V R+E T L V Y I
Sbjct: 1133 INSVLVNDD--DEIAARVVKGRVEKTLLEDVAYFI 1165
>sp|P15349|RPOA1_HALMO DNA-directed RNA polymerase subunit A' (Fragment) OS=Halococcus
morrhuae GN=rpoA1 PE=3 SV=1
Length = 349
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 85/125 (68%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+ +T E ++ + L ARD G A + + N M +G++GS +N++Q+ ACVGQQ
Sbjct: 115 VDETLEMKIMQTLGKARDSAGDIADEHFDDDNPAVIMAESGARGSMLNLTQMAACVGQQA 174
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
V G+RI G+ RTL HF D E+ GFVE+SY +GLTP EFFFHAMGGREGL+DTAV
Sbjct: 175 VRGERINRGYEGRTLSHFKPGDLSAEAHGFVEDSYRSGLTPREFFFHAMGGREGLVDTAV 234
Query: 124 KTAET 128
+T+++
Sbjct: 235 RTSKS 239
>sp|P31813|RPOA1_THECE DNA-directed RNA polymerase subunit A' OS=Thermococcus celer
GN=rpoA1 PE=3 SV=1
Length = 905
Score = 128 bits (322), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 88/126 (69%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L++T E+++ L +ARD G A++ L N+ M G++G +NI+Q+ A +GQQ+
Sbjct: 714 LEETLESKIMAALAEARDNAGKVAERYLGMSNHAVIMAKTGARGKILNITQMAAMLGQQS 773
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
+ GKR+ G+R+R L HF D G +RGFV NSY +GLTP E+FFHAMGGREGL+DTAV
Sbjct: 774 IRGKRLYRGYRERVLTHFKPGDLGARARGFVINSYKSGLTPQEYFFHAMGGREGLVDTAV 833
Query: 124 KTAETA 129
+TA++
Sbjct: 834 RTAQSG 839
>sp|P11512|RPOA1_SULAC DNA-directed RNA polymerase subunit A' OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoA1 PE=3 SV=2
Length = 880
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 88/127 (69%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
++++ E+ + L+ R G A K L +NN+ M + G++GS +NI+Q+ A +GQQ
Sbjct: 691 TIEESLESYILDTLDKLRKVAGEIATKYLDPFNNVYIMAITGARGSELNITQMTALLGQQ 750
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
+V G+RI G+R+RTL F D PE+RGFV+NS++ GL+P E FFHA GGREGL+DTA
Sbjct: 751 SVRGERIRRGYRERTLSLFKYGDIAPEARGFVKNSFMRGLSPYEMFFHAAGGREGLVDTA 810
Query: 123 VKTAETA 129
VKT+++
Sbjct: 811 VKTSQSG 817
>sp|Q980R2|RPOA1_SULSO DNA-directed RNA polymerase subunit A' OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoA1
PE=1 SV=1
Length = 880
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 83/126 (65%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+++ EN + L+ R G A K L +N M G++GS +NI+Q+ A +GQQ+
Sbjct: 692 LEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLGQQS 751
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
V G+RI G+ RTLPHF D PE+RGF+ +S+ GL P+E FFHA GGREGL+DTAV
Sbjct: 752 VRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGREGLVDTAV 811
Query: 124 KTAETA 129
+T+++
Sbjct: 812 RTSQSG 817
>sp|P41556|RPOA1_METVS DNA-directed RNA polymerase subunit A' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoA1 PE=3 SV=1
Length = 889
Score = 121 bits (303), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 86/127 (67%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
++++ E + +IL ARD TG A+K L++ N+ M G++GS +NI+ + A VGQQ
Sbjct: 699 GIEESREAYIMQILGKARDDTGKVAEKYLSKENHAALMARTGARGSLLNITMMAASVGQQ 758
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
+V G R+ G+R RTLPHF + +S GFV + Y GL P+E+FFHAMGGREGL+D A
Sbjct: 759 SVRGGRVFRGYRGRTLPHFGEGSLDAKSHGFVRSCYKKGLAPTEYFFHAMGGREGLVDQA 818
Query: 123 VKTAETA 129
V+TA++
Sbjct: 819 VRTAQSG 825
>sp|P15398|RPA1_SCHPO DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpa1 PE=1 SV=2
Length = 1689
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 34 YNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF 93
YN+++ M V+G+KGSN+N+SQ+ +GQQ +EG+R+P ++LP F+ + +S GF
Sbjct: 935 YNHMQTMTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGF 994
Query: 94 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPAT 153
+ + +L G+ P E++FH M GREGLIDTAVKT+ + +C + G +
Sbjct: 995 IASRFLTGIAPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDS 1054
Query: 154 QMTLNTFHFAGVSSKNVT 171
++ FH+ G S +VT
Sbjct: 1055 DGSIVQFHY-GEDSLDVT 1071
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 56/79 (70%), Gaps = 4/79 (5%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTV 194
PGE VG LA+QS+GEP+TQMTLNTFHFAG +KNVTLG+PRL+EII S + P++T+
Sbjct: 1190 PGESVGVLASQSIGEPSTQMTLNTFHFAGFGAKNVTLGIPRLREIIMTASANIQTPTMTL 1249
Query: 195 FLTGQAARDAEKAKNVLCR 213
L ++K + C+
Sbjct: 1250 RLNDGV---SDKRASAFCK 1265
>sp|Q9V113|RPOA2_PYRAB DNA-directed RNA polymerase subunit A'' OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=rpoA2 PE=3 SV=1
Length = 397
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 116 EGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVP 175
E +ID VK E A PGE VG +AAQS+GEP+TQMTLNTFH+AGV+ NVTLG+P
Sbjct: 45 ETIIDEVVKEYERAL---VEPGEAVGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLP 101
Query: 176 RLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTL 219
R+ EI++ K P P +TV+L + D EKA+ V R+E TTL
Sbjct: 102 RIIEIVDARKNPSTPMMTVYLDEEHRYDREKAEEVARRIEGTTL 145
>sp|O93777|RPOA2_PYRHO DNA-directed RNA polymerase subunit A'' OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=rpoA2 PE=3 SV=1
Length = 397
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 116 EGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVP 175
E +ID +K E A PGE VG +AAQS+GEP+TQMTLNTFH+AGV+ NVTLG+P
Sbjct: 45 ETIIDEVIKEYEKAL---IEPGEAVGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLP 101
Query: 176 RLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTL 219
R+ EI++ K P P +TV+L + D EKA+ V R+E TTL
Sbjct: 102 RIIEIVDARKNPSTPMMTVYLDEEHRYDREKAEEVARRIEGTTL 145
>sp|Q03585|RPOA1_THEAC DNA-directed RNA polymerase subunit A' OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoA1 PE=3 SV=1
Length = 885
Score = 110 bits (276), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 86/131 (65%), Gaps = 8/131 (6%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKA----MVVAGSKGSNINISQVIAC 58
+++ T E ++ RD++G K + Y LK M +G++ + +NIS+V
Sbjct: 698 SVEDTLEMEILSEAGVVRDESG----KIASSYLGLKVPSVIMARSGARATMLNISEVAGI 753
Query: 59 VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGL 118
VGQQ+V G R+ G+ RTLPHF + D G ++RGFV +SY+ GL+P+E+FFH++GGREGL
Sbjct: 754 VGQQSVRGGRLNRGYYNRTLPHFKRGDIGADARGFVRSSYMTGLSPTEYFFHSIGGREGL 813
Query: 119 IDTAVKTAETA 129
+DTAV+T+ +
Sbjct: 814 VDTAVRTSRSG 824
>sp|P09846|RPOA1_METTW DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoA1 PE=3 SV=2
Length = 865
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 86/128 (67%), Gaps = 5/128 (3%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLT-EYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+L++T E ++ ++L +A+DK+G A+ + N+ M + G++G+ +N++Q+ ACVGQ
Sbjct: 678 SLEETLEMKIMQVLGEAKDKSGEIAESYFDMDENHAVIMALTGARGAMLNLTQITACVGQ 737
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+V G RI G+ RTLPHF K + G +SRGFV +SY EF MGGREGL+DT
Sbjct: 738 QSVHGGRITRGYDNRTLPHFKKGELGAKSRGFVHSSYKEDSILLEF----MGGREGLVDT 793
Query: 122 AVKTAETA 129
A++TA++
Sbjct: 794 AIRTAQSG 801
>sp|Q8U0M5|RPOA2_PYRFU DNA-directed RNA polymerase subunit A'' OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpoA2
PE=1 SV=1
Length = 397
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 70/104 (67%), Gaps = 3/104 (2%)
Query: 116 EGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVP 175
E +ID VK E A PGE VG +AAQS+GEP+TQMTLNTFH+AGV+ NVTLG+P
Sbjct: 45 EAIIDDVVKEYERAL---VEPGEPVGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLP 101
Query: 176 RLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTL 219
R+ EI++ K P P +TV+L + D KA+ V R+E TTL
Sbjct: 102 RIIEIVDARKNPSTPMMTVYLDEEHRYDRAKAEEVARRIEGTTL 145
>sp|C5A207|RPOA2_THEGJ DNA-directed RNA polymerase subunit A'' OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=rpoA2 PE=3 SV=1
Length = 391
Score = 107 bits (267), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 70/104 (67%), Gaps = 3/104 (2%)
Query: 116 EGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVP 175
E +I+ AV A PGE +G +AAQS+GEP+TQMTLNTFH+AGV+ NVTLG+P
Sbjct: 43 EAIIEDAVNEYRKAL---VEPGEPIGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLP 99
Query: 176 RLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTL 219
R+ EI++ K P P +TVFL + D EKA+ V R+E TT+
Sbjct: 100 RIIEIVDARKNPSTPVMTVFLDEEHRYDLEKAREVARRIEGTTI 143
>sp|P58192|RPOA2_SULSO DNA-directed RNA polymerase subunit A'' OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoA2
PE=1 SV=1
Length = 392
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 64/90 (71%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 193
APGE +G +AAQS+GEP TQMTL TFHFAG+ NVTLG+PRL EI++ K P P +T
Sbjct: 61 IAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPSTPMMT 120
Query: 194 VFLTGQAARDAEKAKNVLCRLEHTTLRKVL 223
++LT + RD +KA V +LE+T + V+
Sbjct: 121 IYLTDEYKRDRDKALEVARKLEYTKIENVV 150
>sp|B6YT17|RPOA2_THEON DNA-directed RNA polymerase subunit A'' OS=Thermococcus onnurineus
(strain NA1) GN=rpoA2 PE=3 SV=1
Length = 391
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 116 EGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVP 175
E +I+ VK + N+ PGE +G +AAQS+GEP+TQMTLNTFH+AGV+ NVTLG+P
Sbjct: 43 EAIIEETVKEYQ---NSLVEPGEAIGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLP 99
Query: 176 RLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTL 219
R+ EI++ K P P +TV+L + D EKA V R+E TTL
Sbjct: 100 RIIEIVDARKNPSTPIMTVYLDEKHRYDREKALEVARRIEGTTL 143
>sp|Q9YAU2|RPOA2_AERPE DNA-directed RNA polymerase subunit A'' OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rpoA2 PE=3 SV=2
Length = 407
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 70/108 (64%)
Query: 116 EGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVP 175
E I +T T + PGE VG +AAQS+GEP TQMTL TFH+AG+ +VTLG+P
Sbjct: 39 EDKISVVKETIRTYLRSLAQPGEAVGTVAAQSIGEPGTQMTLRTFHYAGIMEFDVTLGLP 98
Query: 176 RLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKVL 223
RL EI++ + P P + ++L + A+D EKAK ++E+TTL K++
Sbjct: 99 RLIEIVDAKQTPSQPLMYIYLKDEYAKDLEKAKEAARKIEYTTLEKII 146
>sp|Q976A6|RPOA2_SULTO DNA-directed RNA polymerase subunit A'' OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=rpoA2 PE=3 SV=2
Length = 392
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 71/108 (65%), Gaps = 3/108 (2%)
Query: 116 EGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVP 175
+ +ID AVK + + PGE VG ++AQS+GEP TQMTL TFHFAG+ NVTLG+P
Sbjct: 46 DKIIDLAVKDYQESL---IEPGEAVGIVSAQSIGEPGTQMTLRTFHFAGIRELNVTLGLP 102
Query: 176 RLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKVL 223
RL EI++ K P P +T++LT + D EKA + ++E+T + V+
Sbjct: 103 RLIEIVDARKTPSTPIMTIYLTDEYKYDKEKALEIARKIEYTKIENVI 150
>sp|P29158|RPOA2_THECE DNA-directed RNA polymerase subunit A'' OS=Thermococcus celer
GN=rpoA2 PE=3 SV=2
Length = 393
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 70/104 (67%), Gaps = 3/104 (2%)
Query: 116 EGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVP 175
+ +ID VK + A PGE +G +AAQS+GEP+TQMTLNTFH+AGV+ NVTLG+P
Sbjct: 43 QAIIDETVKEYQKAL---IEPGEAIGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLP 99
Query: 176 RLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTL 219
R+ EI++ K P P +TV+L + D EKA V R+E T+L
Sbjct: 100 RIIEIVDARKNPSTPIMTVYLDEEHRYDREKALEVARRIEGTSL 143
>sp|C3N7Q1|RPOA2_SULIY DNA-directed RNA polymerase subunit A'' OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 63/90 (70%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 193
APGE +G +AAQS+GEP TQMTL TFHFAG+ NVTLG+PRL EI++ K P P +T
Sbjct: 61 IAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPSTPMMT 120
Query: 194 VFLTGQAARDAEKAKNVLCRLEHTTLRKVL 223
++LT + D EKA V +LE+T + V+
Sbjct: 121 IYLTDEYKHDKEKALEVARKLEYTKIENVV 150
>sp|C3NFS2|RPOA2_SULIN DNA-directed RNA polymerase subunit A'' OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 63/90 (70%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 193
APGE +G +AAQS+GEP TQMTL TFHFAG+ NVTLG+PRL EI++ K P P +T
Sbjct: 61 IAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPSTPMMT 120
Query: 194 VFLTGQAARDAEKAKNVLCRLEHTTLRKVL 223
++LT + D EKA V +LE+T + V+
Sbjct: 121 IYLTDEYKHDKEKALEVARKLEYTKIENVV 150
>sp|C3MYA0|RPOA2_SULIM DNA-directed RNA polymerase subunit A'' OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 63/90 (70%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 193
APGE +G +AAQS+GEP TQMTL TFHFAG+ NVTLG+PRL EI++ K P P +T
Sbjct: 61 IAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPSTPMMT 120
Query: 194 VFLTGQAARDAEKAKNVLCRLEHTTLRKVL 223
++LT + D EKA V +LE+T + V+
Sbjct: 121 IYLTDEYKHDKEKALEVARKLEYTKIENVV 150
>sp|C3MRK4|RPOA2_SULIL DNA-directed RNA polymerase subunit A'' OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 63/90 (70%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 193
APGE +G +AAQS+GEP TQMTL TFHFAG+ NVTLG+PRL EI++ K P P +T
Sbjct: 61 IAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPSTPMMT 120
Query: 194 VFLTGQAARDAEKAKNVLCRLEHTTLRKVL 223
++LT + D EKA V +LE+T + V+
Sbjct: 121 IYLTDEYKHDKEKALEVARKLEYTKIENVV 150
>sp|C4KIV9|RPOA2_SULIK DNA-directed RNA polymerase subunit A'' OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 63/90 (70%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 193
APGE +G +AAQS+GEP TQMTL TFHFAG+ NVTLG+PRL EI++ K P P +T
Sbjct: 61 IAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPSTPMMT 120
Query: 194 VFLTGQAARDAEKAKNVLCRLEHTTLRKVL 223
++LT + D EKA V +LE+T + V+
Sbjct: 121 IYLTDEYKHDKEKALEVARKLEYTKIENVV 150
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,916,775
Number of Sequences: 539616
Number of extensions: 3667116
Number of successful extensions: 10614
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8553
Number of HSP's gapped (non-prelim): 1979
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)