Your job contains 1 sequence.
>psy3022
MLALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG
QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID
TAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI
INISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKVLYIILRPATHYQVELISG
ARRVASLRLFGQEPPFLY
The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3022
(258 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0003277 - symbol:RpII215 "RNA polymerase II 215kD ... 628 6.9e-102 2
ZFIN|ZDB-GENE-041008-78 - symbol:polr2a "polymerase (RNA)... 592 7.1e-96 2
UNIPROTKB|J9NW09 - symbol:POLR2A "DNA-directed RNA polyme... 586 7.5e-95 2
UNIPROTKB|F1PGS0 - symbol:POLR2A "DNA-directed RNA polyme... 586 1.0e-94 2
UNIPROTKB|G3MZY8 - symbol:POLR2A "DNA-directed RNA polyme... 586 1.0e-94 2
UNIPROTKB|P24928 - symbol:POLR2A "DNA-directed RNA polyme... 586 1.0e-94 2
MGI|MGI:98086 - symbol:Polr2a "polymerase (RNA) II (DNA d... 586 1.0e-94 2
RGD|1587326 - symbol:Polr2a "polymerase (RNA) II (DNA dir... 586 1.0e-94 2
WB|WBGene00000123 - symbol:ama-1 species:6239 "Caenorhabd... 587 1.8e-92 2
UNIPROTKB|P16356 - symbol:ama-1 "DNA-directed RNA polymer... 587 1.8e-92 2
DICTYBASE|DDB_G0279193 - symbol:rpb1 "RNA polymerase II c... 524 9.5e-80 2
CGD|CAL0000919 - symbol:RPO21 species:5476 "Candida albic... 480 1.6e-74 2
UNIPROTKB|Q5ACI7 - symbol:RPO21 "DNA-directed RNA polymer... 480 1.6e-74 2
POMBASE|SPBC28F2.12 - symbol:rpb1 "RNA polymerase II larg... 479 1.1e-73 2
SGD|S000002299 - symbol:RPO21 "RNA polymerase II largest ... 476 2.6e-72 2
ASPGD|ASPL0000054301 - symbol:AN0809 species:162425 "Emer... 445 4.1e-69 2
UNIPROTKB|G4MT89 - symbol:MGG_04652 "DNA-directed RNA pol... 459 1.2e-67 2
UNIPROTKB|I3LJR4 - symbol:POLR2A "DNA-directed RNA polyme... 586 3.8e-56 1
DICTYBASE|DDB_G0277199 - symbol:rpc1 "RNA polymerase III,... 363 2.3e-53 2
WB|WBGene00004411 - symbol:rpc-1 species:6239 "Caenorhabd... 362 2.4e-52 2
UNIPROTKB|E9PTB6 - symbol:Polr3a "DNA-directed RNA polyme... 344 1.5e-51 2
UNIPROTKB|O14802 - symbol:POLR3A "DNA-directed RNA polyme... 344 1.7e-51 2
FB|FBgn0030687 - symbol:CG17209 species:7227 "Drosophila ... 350 3.4e-51 2
ASPGD|ASPL0000047704 - symbol:AN10316 species:162425 "Eme... 351 4.3e-50 2
CGD|CAL0002215 - symbol:orf19.3103 species:5476 "Candida ... 338 4.5e-50 2
POMBASE|SPBC651.08c - symbol:rpc1 "DNA-directed RNA polym... 340 8.5e-50 2
SGD|S000005642 - symbol:RPO31 "RNA polymerase III largest... 334 9.7e-50 2
GENEDB_PFALCIPARUM|PF13_0150 - symbol:PF13_0150 "DNA-dire... 338 7.0e-49 2
UNIPROTKB|Q8IE49 - symbol:PF13_0150 "DNA-directed RNA pol... 338 7.0e-49 2
UNIPROTKB|F1NJE0 - symbol:POLR1A "DNA-directed RNA polyme... 250 5.0e-40 2
UNIPROTKB|E1BIX2 - symbol:POLR1A "DNA-directed RNA polyme... 243 9.5e-39 2
TAIR|locus:2076661 - symbol:NRPA1 "nuclear RNA polymerase... 251 1.4e-38 2
RGD|620824 - symbol:Polr1a "polymerase (RNA) I polypeptid... 240 1.5e-38 2
UNIPROTKB|G3V7B7 - symbol:Polr1a "DNA-directed RNA polyme... 240 1.5e-38 2
UNIPROTKB|J9P5G4 - symbol:POLR1A "DNA-directed RNA polyme... 242 2.0e-38 2
UNIPROTKB|F1SVC3 - symbol:POLR1A "DNA-directed RNA polyme... 241 2.0e-38 2
UNIPROTKB|E2R0G4 - symbol:POLR1A "DNA-directed RNA polyme... 242 2.0e-38 2
UNIPROTKB|E2QXD8 - symbol:POLR3A "DNA-directed RNA polyme... 344 2.2e-38 2
MGI|MGI:1096397 - symbol:Polr1a "polymerase (RNA) I polyp... 240 2.5e-38 2
FB|FBgn0019938 - symbol:RpI1 "RNA polymerase I subunit" s... 247 3.6e-38 2
ZFIN|ZDB-GENE-030131-5286 - symbol:polr1a "polymerase (RN... 247 8.2e-38 2
UNIPROTKB|B9ZVN9 - symbol:POLR1A "DNA-directed RNA polyme... 238 1.6e-37 2
UNIPROTKB|O95602 - symbol:POLR1A "DNA-directed RNA polyme... 238 1.8e-37 2
WB|WBGene00012999 - symbol:rpoa-1 species:6239 "Caenorhab... 238 6.0e-37 2
DICTYBASE|DDB_G0275759 - symbol:rpa1 "RNA polymerase I, l... 248 5.5e-36 2
UNIPROTKB|G4NBX7 - symbol:MGG_01158 "DNA-directed RNA pol... 219 1.4e-35 2
UNIPROTKB|F1S2E6 - symbol:POLR3A "DNA-directed RNA polyme... 344 7.2e-30 1
UNIPROTKB|A4IF62 - symbol:POLR3A "DNA-directed RNA polyme... 344 7.2e-30 1
UNIPROTKB|J9P629 - symbol:POLR3A "DNA-directed RNA polyme... 344 7.2e-30 1
UNIPROTKB|F1NIK7 - symbol:POLR3A "DNA-directed RNA polyme... 343 9.2e-30 1
UNIPROTKB|Q5ZL98 - symbol:POLR3A "DNA-directed RNA polyme... 343 9.2e-30 1
ZFIN|ZDB-GENE-050208-103 - symbol:polr3a "polymerase (RNA... 338 3.1e-29 1
POMBASE|SPBC4C3.05c - symbol:nuc1 "DNA-directed RNA polym... 274 2.7e-22 1
CGD|CAL0001661 - symbol:RPA190 species:5476 "Candida albi... 266 1.9e-21 1
UNIPROTKB|H9L2Z1 - symbol:H9L2Z1 "DNA-directed RNA polyme... 257 2.2e-21 1
UNIPROTKB|H9L2Z2 - symbol:H9L2Z2 "DNA-directed RNA polyme... 257 2.3e-21 1
UNIPROTKB|H9L2Z3 - symbol:H9L2Z3 "DNA-directed RNA polyme... 256 3.0e-21 1
UNIPROTKB|H9L2Z0 - symbol:H9L2Z0 "DNA-directed RNA polyme... 255 3.6e-21 1
UNIPROTKB|E1C4T2 - symbol:POLR1A "Uncharacterized protein... 216 7.3e-21 2
SGD|S000005868 - symbol:RPA190 "RNA polymerase I largest ... 256 2.2e-20 1
RGD|1305574 - symbol:Polr3a "polymerase (RNA) III (DNA di... 235 4.8e-19 1
TIGR_CMR|CHY_2317 - symbol:CHY_2317 "DNA-directed RNA pol... 162 2.5e-13 3
TIGR_CMR|BA_0103 - symbol:BA_0103 "DNA-directed RNA polym... 153 2.2e-12 2
UNIPROTKB|P37871 - symbol:rpoC "DNA-directed RNA polymera... 148 9.3e-12 2
UNIPROTKB|P0A674 - symbol:rpoC "DNA-directed RNA polymera... 137 2.6e-10 2
TIGR_CMR|DET_0604 - symbol:DET_0604 "DNA-directed RNA pol... 145 4.6e-10 2
TIGR_CMR|CJE_0529 - symbol:CJE_0529 "DNA-directed RNA pol... 112 4.7e-09 4
TIGR_CMR|SPO_3507 - symbol:SPO_3507 "DNA-directed RNA pol... 107 2.1e-08 4
TIGR_CMR|CPS_4768 - symbol:CPS_4768 "DNA-directed RNA pol... 108 6.2e-08 4
UNIPROTKB|P0A8T7 - symbol:rpoC "RNA polymerase, beta' sub... 109 9.5e-08 4
TIGR_CMR|NSE_0677 - symbol:NSE_0677 "DNA-directed RNA pol... 110 1.3e-07 4
UNIPROTKB|Q9KV29 - symbol:rpoC "DNA-directed RNA polymera... 108 3.7e-07 4
TIGR_CMR|VC_0329 - symbol:VC_0329 "DNA-directed RNA polym... 108 3.7e-07 4
TIGR_CMR|SO_0225 - symbol:SO_0225 "DNA-directed RNA polym... 108 3.7e-07 4
TIGR_CMR|ECH_0951 - symbol:ECH_0951 "DNA-directed RNA pol... 107 6.2e-07 4
TIGR_CMR|APH_1023 - symbol:APH_1023 "DNA-directed RNA pol... 107 7.7e-07 4
UNIPROTKB|F1LQN7 - symbol:Polr1a "DNA-directed RNA polyme... 139 2.3e-06 1
TIGR_CMR|CBU_0232 - symbol:CBU_0232 "DNA-directed RNA pol... 108 7.0e-06 3
UNIPROTKB|P0C507 - symbol:rpoC2 "DNA-directed RNA polymer... 103 0.00013 3
UNIPROTKB|P0C508 - symbol:rpoC2 "DNA-directed RNA polymer... 103 0.00013 3
UNIPROTKB|P0C509 - symbol:rpoC2 "DNA-directed RNA polymer... 103 0.00013 3
UNIPROTKB|Q6ENI2 - symbol:rpoC2 "DNA-directed RNA polymer... 103 0.00013 3
>FB|FBgn0003277 [details] [associations]
symbol:RpII215 "RNA polymerase II 215kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS;NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0005700
"polytene chromosome" evidence=IDA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
PROSITE:PS00115 SMART:SM00663 GO:GO:0007095 GO:GO:0046872
GO:GO:0003677 EMBL:AE014298 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0005703 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 GeneTree:ENSGT00700000104490 OMA:KVLPWST KO:K03006
EMBL:M27431 EMBL:M14203 EMBL:M11798 EMBL:M19537 PIR:S04457
RefSeq:NP_511124.1 UniGene:Dm.2925 ProteinModelPortal:P04052
SMR:P04052 DIP:DIP-22282N IntAct:P04052 MINT:MINT-970158
STRING:P04052 PaxDb:P04052 EnsemblMetazoa:FBtr0073542 GeneID:32100
KEGG:dme:Dmel_CG1554 CTD:32100 FlyBase:FBgn0003277
InParanoid:P04052 OrthoDB:EOG4QRFJV PhylomeDB:P04052
GenomeRNAi:32100 NextBio:776837 Bgee:P04052 GermOnline:CG1554
Uniprot:P04052
Length = 1887
Score = 628 (226.1 bits), Expect = 6.9e-102, Sum P(2) = 6.9e-102
Identities = 120/125 (96%), Positives = 125/125 (100%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQN
Sbjct: 725 LRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAV
Sbjct: 785 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 844
Query: 124 KTAET 128
KTAET
Sbjct: 845 KTAET 849
Score = 430 (156.4 bits), Expect = 6.9e-102, Sum P(2) = 6.9e-102
Identities = 87/91 (95%), Positives = 88/91 (96%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS
Sbjct: 1071 AQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTVFLTG AARDAEKAKNVLCRLEHTTLRKV
Sbjct: 1131 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 1161
>ZFIN|ZDB-GENE-041008-78 [details] [associations]
symbol:polr2a "polymerase (RNA) II (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 ZFIN:ZDB-GENE-041008-78 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0005665 GeneTree:ENSGT00700000104490 EMBL:AL929346
IPI:IPI00608319 Ensembl:ENSDART00000077495 Bgee:F1Q9K4
Uniprot:F1Q9K4
Length = 1965
Score = 592 (213.5 bits), Expect = 7.1e-96, Sum P(2) = 7.1e-96
Identities = 114/125 (91%), Positives = 120/125 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVVAGSKGS INISQVIA VGQQN
Sbjct: 730 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQN 789
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 790 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 849
Query: 124 KTAET 128
KTAET
Sbjct: 850 KTAET 854
Score = 410 (149.4 bits), Expect = 7.1e-96, Sum P(2) = 7.1e-96
Identities = 82/97 (84%), Positives = 89/97 (91%)
Query: 127 ETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK 185
ET N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISK
Sbjct: 1070 ETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISK 1129
Query: 186 KPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+PK PSLTVFL GQAARDAE+AK++LCRLEHTTLRKV
Sbjct: 1130 RPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKV 1166
>UNIPROTKB|J9NW09 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 EMBL:AAEX03003616 EMBL:AAEX03003617
Ensembl:ENSCAFT00000050029 Uniprot:J9NW09
Length = 1789
Score = 586 (211.3 bits), Expect = 7.5e-95, Sum P(2) = 7.5e-95
Identities = 112/125 (89%), Positives = 120/125 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAET 128
KTAET
Sbjct: 853 KTAET 857
Score = 405 (147.6 bits), Expect = 7.5e-95, Sum P(2) = 7.5e-95
Identities = 81/97 (83%), Positives = 89/97 (91%)
Query: 127 ETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK 185
E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISK
Sbjct: 1073 ESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISK 1132
Query: 186 KPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
KPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1133 KPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1169
>UNIPROTKB|F1PGS0 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:AAEX03003616
EMBL:AAEX03003617 Ensembl:ENSCAFT00000026237 Uniprot:F1PGS0
Length = 1969
Score = 586 (211.3 bits), Expect = 1.0e-94, Sum P(2) = 1.0e-94
Identities = 112/125 (89%), Positives = 120/125 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAET 128
KTAET
Sbjct: 853 KTAET 857
Score = 405 (147.6 bits), Expect = 1.0e-94, Sum P(2) = 1.0e-94
Identities = 81/97 (83%), Positives = 89/97 (91%)
Query: 127 ETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK 185
E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISK
Sbjct: 1073 ESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISK 1132
Query: 186 KPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
KPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1133 KPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1169
>UNIPROTKB|G3MZY8 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:DAAA02048777
EMBL:DAAA02048778 EMBL:DAAA02048779 EMBL:DAAA02048780
EMBL:DAAA02048781 Ensembl:ENSBTAT00000064788 Uniprot:G3MZY8
Length = 1970
Score = 586 (211.3 bits), Expect = 1.0e-94, Sum P(2) = 1.0e-94
Identities = 112/125 (89%), Positives = 120/125 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAET 128
KTAET
Sbjct: 853 KTAET 857
Score = 405 (147.6 bits), Expect = 1.0e-94, Sum P(2) = 1.0e-94
Identities = 81/97 (83%), Positives = 89/97 (91%)
Query: 127 ETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK 185
E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISK
Sbjct: 1073 ESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISK 1132
Query: 186 KPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
KPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1133 KPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1169
>UNIPROTKB|P24928 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003677 "DNA binding" evidence=NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0006366
"transcription from RNA polymerase II promoter"
evidence=IDA;NAS;TAS] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IDA] [GO:0004672 "protein kinase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0031625 "ubiquitin protein ligase binding" evidence=IPI]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 Reactome:REACT_116125
EMBL:CH471108 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006367 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 EMBL:AC113189 GO:GO:0003899 PDB:2GHQ PDB:2GHT
PDBsum:2GHQ PDBsum:2GHT eggNOG:COG0086 GO:GO:0003968 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X63564 EMBL:X74874
EMBL:X74873 EMBL:X74872 EMBL:X74871 EMBL:X74870 EMBL:BC137231
IPI:IPI00031627 PIR:I38186 PIR:S21054 RefSeq:NP_000928.1
UniGene:Hs.270017 PDB:2LTO PDBsum:2LTO ProteinModelPortal:P24928
SMR:P24928 DIP:DIP-29011N IntAct:P24928 MINT:MINT-156582
STRING:P24928 PhosphoSite:P24928 DMDM:281185484 PaxDb:P24928
PRIDE:P24928 Ensembl:ENST00000322644 GeneID:5430 KEGG:hsa:5430
UCSC:uc002ghf.4 CTD:5430 GeneCards:GC17P007387 H-InvDB:HIX0173727
HGNC:HGNC:9187 HPA:CAB012226 HPA:CAB016388 HPA:CAB022311
HPA:HPA021563 MIM:180660 neXtProt:NX_P24928 PharmGKB:PA33507
HOVERGEN:HBG004339 InParanoid:P24928 OrthoDB:EOG4JWVCM
BindingDB:P24928 ChEMBL:CHEMBL1641353 ChiTaRS:POLR2A
EvolutionaryTrace:P24928 GenomeRNAi:5430 NextBio:21009
ArrayExpress:P24928 Bgee:P24928 CleanEx:HS_POLR2A
Genevestigator:P24928 GermOnline:ENSG00000181222 Uniprot:P24928
Length = 1970
Score = 586 (211.3 bits), Expect = 1.0e-94, Sum P(2) = 1.0e-94
Identities = 112/125 (89%), Positives = 120/125 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAET 128
KTAET
Sbjct: 853 KTAET 857
Score = 405 (147.6 bits), Expect = 1.0e-94, Sum P(2) = 1.0e-94
Identities = 81/97 (83%), Positives = 89/97 (91%)
Query: 127 ETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK 185
E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISK
Sbjct: 1073 ESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISK 1132
Query: 186 KPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
KPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1133 KPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1169
>MGI|MGI:98086 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide
A" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 MGI:MGI:98086
GO:GO:0046872 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
EMBL:AL603707 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 CTD:5430
HOVERGEN:HBG004339 OrthoDB:EOG4JWVCM ChiTaRS:POLR2A EMBL:M12130
EMBL:M14101 IPI:IPI00136207 PIR:A28490 RefSeq:NP_033115.1
UniGene:Mm.16533 DisProt:DP00181 ProteinModelPortal:P08775
SMR:P08775 DIP:DIP-46369N IntAct:P08775 STRING:P08775
PhosphoSite:P08775 PaxDb:P08775 PRIDE:P08775
Ensembl:ENSMUST00000058470 Ensembl:ENSMUST00000071213 GeneID:20020
KEGG:mmu:20020 UCSC:uc007jrj.1 InParanoid:Q5F298 NextBio:297535
Bgee:P08775 CleanEx:MM_POLR2A Genevestigator:P08775
GermOnline:ENSMUSG00000005198 Uniprot:P08775
Length = 1970
Score = 586 (211.3 bits), Expect = 1.0e-94, Sum P(2) = 1.0e-94
Identities = 112/125 (89%), Positives = 120/125 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAET 128
KTAET
Sbjct: 853 KTAET 857
Score = 405 (147.6 bits), Expect = 1.0e-94, Sum P(2) = 1.0e-94
Identities = 81/97 (83%), Positives = 89/97 (91%)
Query: 127 ETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK 185
E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISK
Sbjct: 1073 ESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISK 1132
Query: 186 KPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
KPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1133 KPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1169
>RGD|1587326 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 RGD:1587326 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 KO:K03006 CTD:5430 OrthoDB:EOG4JWVCM
IPI:IPI00952328 RefSeq:XP_001079162.1 RefSeq:XP_343923.3
UniGene:Rn.163136 Ensembl:ENSRNOT00000068013 GeneID:363633
KEGG:rno:363633 UCSC:RGD:1587326 NextBio:683839 ArrayExpress:D4A5A6
Uniprot:D4A5A6
Length = 1970
Score = 586 (211.3 bits), Expect = 1.0e-94, Sum P(2) = 1.0e-94
Identities = 112/125 (89%), Positives = 120/125 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAET 128
KTAET
Sbjct: 853 KTAET 857
Score = 405 (147.6 bits), Expect = 1.0e-94, Sum P(2) = 1.0e-94
Identities = 81/97 (83%), Positives = 89/97 (91%)
Query: 127 ETACNAKCA-PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK 185
E+ N A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISK
Sbjct: 1073 ESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISK 1132
Query: 186 KPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
KPK PSLTVFL GQ+ARDAE+AK++LCRLEHTTLRKV
Sbjct: 1133 KPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKV 1169
>WB|WBGene00000123 [details] [associations]
symbol:ama-1 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0010458 "exit from mitosis" evidence=IMP]
[GO:0008356 "asymmetric cell division" evidence=IMP] [GO:0032502
"developmental process" evidence=IMP] [GO:0006479 "protein
methylation" evidence=IMP] [GO:0007369 "gastrulation" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0001055 "RNA polymerase II
activity" evidence=IMP] [GO:0042789 "mRNA transcription from RNA
polymerase II promoter" evidence=IMP] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 GO:GO:0005634
GO:GO:0009792 GO:GO:0040010 GO:GO:0007052 GO:GO:0010458
GO:GO:0046872 GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006479 GO:GO:0008356 GO:GO:0007369
GO:GO:0042789 EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665
EMBL:M29235 PIR:A34092 PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356
STRING:P16356 PaxDb:P16356 EnsemblMetazoa:F36A4.7.1
EnsemblMetazoa:F36A4.7.2 GeneID:177190 KEGG:cel:CELE_F36A4.7
UCSC:F36A4.7 CTD:247749 WormBase:F36A4.7
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975 InParanoid:P16356
OMA:KVLPWST NextBio:895720 GO:GO:0001055 Uniprot:P16356
Length = 1856
Score = 587 (211.7 bits), Expect = 1.8e-92, Sum P(2) = 1.8e-92
Identities = 111/125 (88%), Positives = 121/125 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VN+ILNDARD+TG SA+KSL+E+NN K+MVV+GSKGS INISQVIACVGQQN
Sbjct: 727 LRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 846
Query: 124 KTAET 128
KTAET
Sbjct: 847 KTAET 851
Score = 382 (139.5 bits), Expect = 1.8e-92, Sum P(2) = 1.8e-92
Identities = 75/87 (86%), Positives = 82/87 (94%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK K PSLTVF
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVF 1136
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTG AA+D EKAK+VLC+LEHTTL+KV
Sbjct: 1137 LTGAAAKDPEKAKDVLCKLEHTTLKKV 1163
Score = 38 (18.4 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 14 RILNDARDKTGGSAKKSLTE-YNNLKAMVV 42
R+L + KTG ++KK LT Y+ KA V
Sbjct: 120 RVLEILK-KTGTNSKKRLTMIYDLCKAKSV 148
>UNIPROTKB|P16356 [details] [associations]
symbol:ama-1 "DNA-directed RNA polymerase II subunit RPB1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0007052 GO:GO:0010458 GO:GO:0046872
GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0006479 GO:GO:0008356 GO:GO:0007369 GO:GO:0042789
EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665 EMBL:M29235 PIR:A34092
PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356 STRING:P16356
PaxDb:P16356 EnsemblMetazoa:F36A4.7.1 EnsemblMetazoa:F36A4.7.2
GeneID:177190 KEGG:cel:CELE_F36A4.7 UCSC:F36A4.7 CTD:247749
WormBase:F36A4.7 GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975
InParanoid:P16356 OMA:KVLPWST NextBio:895720 GO:GO:0001055
Uniprot:P16356
Length = 1856
Score = 587 (211.7 bits), Expect = 1.8e-92, Sum P(2) = 1.8e-92
Identities = 111/125 (88%), Positives = 121/125 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFEN+VN+ILNDARD+TG SA+KSL+E+NN K+MVV+GSKGS INISQVIACVGQQN
Sbjct: 727 LRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQN 786
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 787 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 846
Query: 124 KTAET 128
KTAET
Sbjct: 847 KTAET 851
Score = 382 (139.5 bits), Expect = 1.8e-92, Sum P(2) = 1.8e-92
Identities = 75/87 (86%), Positives = 82/87 (94%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK K PSLTVF
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVF 1136
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
LTG AA+D EKAK+VLC+LEHTTL+KV
Sbjct: 1137 LTGAAAKDPEKAKDVLCKLEHTTLKKV 1163
Score = 38 (18.4 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 14 RILNDARDKTGGSAKKSLTE-YNNLKAMVV 42
R+L + KTG ++KK LT Y+ KA V
Sbjct: 120 RVLEILK-KTGTNSKKRLTMIYDLCKAKSV 148
>DICTYBASE|DDB_G0279193 [details] [associations]
symbol:rpb1 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 dictyBase:DDB_G0279193
GO:GO:0006355 GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000030 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
OMA:KVLPWST EMBL:S52651 PIR:A56823 RefSeq:XP_641735.1 STRING:P35084
PRIDE:P35084 EnsemblProtists:DDB0215406 GeneID:8621932
KEGG:ddi:DDB_G0279193 KO:K03006 ProtClustDB:CLSZ2428993
Uniprot:P35084
Length = 1727
Score = 524 (189.5 bits), Expect = 9.5e-80, Sum P(2) = 9.5e-80
Identities = 100/123 (81%), Positives = 110/123 (89%)
Query: 6 QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVE 65
+TFE +VN++LN ARD G SA+ SL+E NNLKAMV AGSKGS INISQ++ACVGQQNVE
Sbjct: 721 ETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQMMACVGQQNVE 780
Query: 66 GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 125
GKRIPFGF+ RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT
Sbjct: 781 GKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 840
Query: 126 AET 128
+ET
Sbjct: 841 SET 843
Score = 324 (119.1 bits), Expect = 9.5e-80, Sum P(2) = 9.5e-80
Identities = 65/87 (74%), Positives = 75/87 (86%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVGALAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIINI+K+ K PSLT++
Sbjct: 1079 PGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQVKTPSLTIY 1138
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L ARD ++AK V +LE+TTL V
Sbjct: 1139 LKPHMARDMDRAKIVKSQLEYTTLANV 1165
>CGD|CAL0000919 [details] [associations]
symbol:RPO21 species:5476 "Candida albicans" [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 CGD:CAL0000919
GO:GO:0071216 GO:GO:0036180 GO:GO:0003677 GO:GO:0006366
GO:GO:0009267 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1 STRING:Q5ACI7
GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 480 (174.0 bits), Expect = 1.6e-74, Sum P(2) = 1.6e-74
Identities = 92/127 (72%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ SL + NN+K MV +GSKGS INISQ+ ACVGQ
Sbjct: 708 MTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 768 QIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 827
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 828 AVKTAET 834
Score = 319 (117.4 bits), Expect = 1.6e-74, Sum P(2) = 1.6e-74
Identities = 62/87 (71%), Positives = 73/87 (83%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG +AAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K P++TVF
Sbjct: 1061 PGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTVF 1120
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + A D EKAK V +EHTTL+ V
Sbjct: 1121 LDPEVASDIEKAKIVQSAIEHTTLKNV 1147
>UNIPROTKB|Q5ACI7 [details] [associations]
symbol:RPO21 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 CGD:CAL0000919 GO:GO:0071216 GO:GO:0036180
GO:GO:0003677 GO:GO:0006366 GO:GO:0009267 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1
STRING:Q5ACI7 GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 480 (174.0 bits), Expect = 1.6e-74, Sum P(2) = 1.6e-74
Identities = 92/127 (72%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V+R+LN ARD G SA+ SL + NN+K MV +GSKGS INISQ+ ACVGQ
Sbjct: 708 MTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 768 QIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 827
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 828 AVKTAET 834
Score = 319 (117.4 bits), Expect = 1.6e-74, Sum P(2) = 1.6e-74
Identities = 62/87 (71%), Positives = 73/87 (83%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG +AAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K P++TVF
Sbjct: 1061 PGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTVF 1120
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L + A D EKAK V +EHTTL+ V
Sbjct: 1121 LDPEVASDIEKAKIVQSAIEHTTLKNV 1147
>POMBASE|SPBC28F2.12 [details] [associations]
symbol:rpb1 "RNA polymerase II large subunit Rpb1"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IC] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IC] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 PomBase:SPBC28F2.12 GO:GO:0005829
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 PDB:3H0G PDBsum:3H0G
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X56564 PIR:S26849
RefSeq:NP_595673.1 ProteinModelPortal:P36594 IntAct:P36594
MINT:MINT-1214221 STRING:P36594 EnsemblFungi:SPBC28F2.12.1
GeneID:2540292 KEGG:spo:SPBC28F2.12 OrthoDB:EOG4J14H5
EvolutionaryTrace:P36594 NextBio:20801422 Uniprot:P36594
Length = 1752
Score = 479 (173.7 bits), Expect = 1.1e-73, Sum P(2) = 1.1e-73
Identities = 94/127 (74%), Positives = 106/127 (83%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE +V+RILN ARD G SA+ SL + NN+K MV AGSKGS INISQ+ ACVGQ
Sbjct: 714 MTLRESFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQ 773
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q VEGKRIPFGF+ RTLPHF KDD PESRGF+ENSYL GLTP EFFFHAM GREGLIDT
Sbjct: 774 QIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDT 833
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 834 AVKTAET 840
Score = 312 (114.9 bits), Expect = 1.1e-73, Sum P(2) = 1.1e-73
Identities = 62/91 (68%), Positives = 74/91 (81%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A +PGEMVG LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K PS
Sbjct: 1059 AVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPS 1118
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
LT++L A + + AKNV ++EHTTL V
Sbjct: 1119 LTIYLMPWIAANMDLAKNVQTQIEHTTLSTV 1149
>SGD|S000002299 [details] [associations]
symbol:RPO21 "RNA polymerase II largest subunit B220"
species:4932 "Saccharomyces cerevisiae" [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA;IMP] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 SGD:S000002299 GO:GO:0005739
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:X96876 EMBL:U27182
GO:GO:0003899 PDB:4GWQ PDBsum:4GWQ PDB:2LO6 PDBsum:2LO6
eggNOG:COG0086 GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50
PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV
PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA
PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM
PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63
PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5
PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT
PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92
PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI
PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM
PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU
PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ
PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y
PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD
PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16 PDBsum:3S17
PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D
PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E
PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K
PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
EMBL:X03128 EMBL:Z74188 PIR:S67686 RefSeq:NP_010141.1 PDB:2L0I
PDBsum:2L0I ProteinModelPortal:P04050 SMR:P04050 DIP:DIP-611N
IntAct:P04050 MINT:MINT-432838 STRING:P04050 PaxDb:P04050
PeptideAtlas:P04050 EnsemblFungi:YDL140C GeneID:851415
KEGG:sce:YDL140C CYGD:YDL140c GeneTree:ENSGT00700000105212
EvolutionaryTrace:P04050 NextBio:968606 ArrayExpress:P04050
Genevestigator:P04050 GermOnline:YDL140C Uniprot:P04050
Length = 1733
Score = 476 (172.6 bits), Expect = 2.6e-72, Sum P(2) = 2.6e-72
Identities = 92/127 (72%), Positives = 107/127 (84%)
Query: 2 LALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
+ L+++FE+ V R LN+ARDK G A+ +L + NN+K MV+AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQ 767
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 122 AVKTAET 128
AVKTAET
Sbjct: 828 AVKTAET 834
Score = 302 (111.4 bits), Expect = 2.6e-72, Sum P(2) = 2.6e-72
Identities = 60/87 (68%), Positives = 70/87 (80%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 1119
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV 222
L A D E+AK + +EHTTL+ V
Sbjct: 1120 LEPGHAADQEQAKLIRSAIEHTTLKSV 1146
>ASPGD|ASPL0000054301 [details] [associations]
symbol:AN0809 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 EMBL:BN001308 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACD01000013 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
RefSeq:XP_658413.1 STRING:Q5BF71 EnsemblFungi:CADANIAT00001852
GeneID:2876587 KEGG:ani:AN0809.2 Uniprot:Q5BF71
Length = 1745
Score = 445 (161.7 bits), Expect = 4.1e-69, Sum P(2) = 4.1e-69
Identities = 88/125 (70%), Positives = 102/125 (81%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+++TFE++V+ LN ARD+ G + +KSL + NN M +GSKGS INISQ+ A VGQQ
Sbjct: 730 VRETFESKVSVALNTARDEAGTATEKSLKDLNNAVQMSRSGSKGSIINISQMTAVVGQQM 789
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRI FGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDTAV
Sbjct: 790 VEGKRIAFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 849
Query: 124 KTAET 128
KTAET
Sbjct: 850 KTAET 854
Score = 303 (111.7 bits), Expect = 4.1e-69, Sum P(2) = 4.1e-69
Identities = 60/91 (65%), Positives = 71/91 (78%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A APGEMVG LAAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI+N++ K PS
Sbjct: 1076 AAAAPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPS 1135
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKV 222
+TV+ + A D E AK + +E+T LR +
Sbjct: 1136 MTVYQEPERAHDKEGAKQLRSAVEYTNLRSI 1166
Score = 41 (19.5 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 61 QQNVEGKRIPFGFRKRTL--PHFIKDDYG-PES 90
+QN+ GKR+ F R P+ D+ G P+S
Sbjct: 351 RQNLMGKRVDFSARTVITGDPNLSLDEVGVPKS 383
>UNIPROTKB|G4MT89 [details] [associations]
symbol:MGG_04652 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0043581 EMBL:CM001232 GO:GO:0003899
GO:GO:0005665 KO:K03006 RefSeq:XP_003713642.1
EnsemblFungi:MGG_04652T0 GeneID:2678092 KEGG:mgr:MGG_04652
Uniprot:G4MT89
Length = 1757
Score = 459 (166.6 bits), Expect = 1.2e-67, Sum P(2) = 1.2e-67
Identities = 88/125 (70%), Positives = 105/125 (84%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
+++TFE++V++ LN AR+K G + +KSL + NN M +GSKGS+INISQ+ A VGQQ
Sbjct: 721 IRETFESKVSKALNTAREKAGTTTEKSLKDINNAVTMSRSGSKGSSINISQMTALVGQQI 780
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHF KDD+ PE+RGFVENSYL GLTPSEFFFHAM GREGLIDTAV
Sbjct: 781 VEGKRIPFGFKYRTLPHFTKDDFSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAV 840
Query: 124 KTAET 128
KTAET
Sbjct: 841 KTAET 845
Score = 275 (101.9 bits), Expect = 1.2e-67, Sum P(2) = 1.2e-67
Identities = 57/90 (63%), Positives = 67/90 (74%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 194
+PGEMVG LAAQS+GEPATQMTLNTFHF G+SSKNVTLGVPRLKEI+N+S + K P + V
Sbjct: 1072 SPGEMVGVLAAQSIGEPATQMTLNTFHFTGISSKNVTLGVPRLKEILNVSAEIKTPGMVV 1131
Query: 195 FLTGQAARD--AEKAKNVLCRLEHTTLRKV 222
L + D E AK + +EHT LR V
Sbjct: 1132 RLDPKMYPDFKQENAKTLRSLVEHTNLRSV 1161
>UNIPROTKB|I3LJR4 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04992
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GeneTree:ENSGT00700000104490 EMBL:FP565284
Ensembl:ENSSSCT00000029425 Uniprot:I3LJR4
Length = 1010
Score = 586 (211.3 bits), Expect = 3.8e-56, P = 3.8e-56
Identities = 112/125 (89%), Positives = 120/125 (96%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+QTFENQVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQN
Sbjct: 733 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 792
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAV
Sbjct: 793 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 852
Query: 124 KTAET 128
KTAET
Sbjct: 853 KTAET 857
>DICTYBASE|DDB_G0277199 [details] [associations]
symbol:rpc1 "RNA polymerase III, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0277199 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000019 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
KO:K03018 eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:XP_642724.1 ProteinModelPortal:Q86AQ5
STRING:Q86AQ5 EnsemblProtists:DDB0216293 GeneID:8620917
KEGG:ddi:DDB_G0277199 ProtClustDB:CLSZ2729139 Uniprot:Q86AQ5
Length = 1450
Score = 363 (132.8 bits), Expect = 2.3e-53, Sum P(2) = 2.3e-53
Identities = 71/126 (56%), Positives = 88/126 (69%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
+++QTFE ++N+ L+ RD G L YN+ M + GSKGSNINI+Q+I CVGQQ
Sbjct: 731 SMEQTFEAKMNQTLSQIRDDCGKLCVNDLPNYNSPLIMGLCGSKGSNINIAQMICCVGQQ 790
Query: 63 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 122
V G RIP GF RT PHF P+S+GFV NS+ G+ P+EFFFH MGGREGL+DTA
Sbjct: 791 IVNGTRIPNGFTNRTTPHFKHFAKNPKSKGFVSNSFYTGMIPTEFFFHTMGGREGLVDTA 850
Query: 123 VKTAET 128
VKTAET
Sbjct: 851 VKTAET 856
Score = 234 (87.4 bits), Expect = 2.3e-53, Sum P(2) = 2.3e-53
Identities = 57/118 (48%), Positives = 72/118 (61%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PG VGA+ AQS+GEP TQMTL TFHFAGV+S NVTLGVPR+KEIIN +K P
Sbjct: 1095 ARIEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKNISTPI 1154
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVLYIILRPATHYQVELISGARRVASLRL 249
+T L D A+ V R+E TTL V ATH + E++ A S+++
Sbjct: 1155 ITASLN--CDYDIRSARIVAGRIEKTTLGHV-------ATHIK-EVVKRAGCYLSIKI 1202
>WB|WBGene00004411 [details] [associations]
symbol:rpc-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0040035 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 eggNOG:COG0086
HSSP:P04050 GO:GO:0032549 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:FO080771 PIR:T34157 RefSeq:NP_501127.2
ProteinModelPortal:Q18566 SMR:Q18566 STRING:Q18566 PaxDb:Q18566
EnsemblMetazoa:C42D4.8 GeneID:177491 KEGG:cel:CELE_C42D4.8
UCSC:C42D4.8 CTD:177491 WormBase:C42D4.8 InParanoid:Q18566
NextBio:897062 Uniprot:Q18566
Length = 1400
Score = 362 (132.5 bits), Expect = 2.4e-52, Sum P(2) = 2.4e-52
Identities = 71/124 (57%), Positives = 91/124 (73%)
Query: 5 KQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 64
++T E+ + R L+ RD G ++L++YN M V GSKGS INISQ+IACVGQQ +
Sbjct: 741 EETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAI 800
Query: 65 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 124
G R P GF +R+LPHF + PE++GFV NS+ +GLTP+EFFFH MGGREGL+DTAVK
Sbjct: 801 SGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVK 860
Query: 125 TAET 128
TAET
Sbjct: 861 TAET 864
Score = 225 (84.3 bits), Expect = 2.4e-52, Sum P(2) = 2.4e-52
Identities = 53/117 (45%), Positives = 74/117 (63%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PG VGA+AA S+GEP+TQMTL TFHFAGV+S N+T GVPR+KEIIN K P +T
Sbjct: 1042 PGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAA 1101
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKVL-YI--ILRPATHYQVELISGARRVASLRL 249
L D A+ V R+E TTL ++ YI + P ++ + ++ ++R+ L+L
Sbjct: 1102 LLDPY--DESLARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKLN-SKRIRLLQL 1155
>UNIPROTKB|E9PTB6 [details] [associations]
symbol:Polr3a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0032728
"positive regulation of interferon-beta production" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:1305574 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
IPI:IPI00766228 PRIDE:E9PTB6 Ensembl:ENSRNOT00000013501
Uniprot:E9PTB6
Length = 1342
Score = 344 (126.2 bits), Expect = 1.5e-51, Sum P(2) = 1.5e-51
Identities = 67/124 (54%), Positives = 87/124 (70%)
Query: 5 KQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 64
++T E + + L+ RD G + + L + N+ M + GSKGS INISQ+IACVGQQ +
Sbjct: 745 EETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAI 804
Query: 65 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 124
G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M GREGL+DTAVK
Sbjct: 805 SGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVK 864
Query: 125 TAET 128
TAET
Sbjct: 865 TAET 868
Score = 235 (87.8 bits), Expect = 1.5e-51, Sum P(2) = 1.5e-51
Identities = 59/121 (48%), Positives = 75/121 (61%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PG VGAL AQS+GEP TQMTL TFHFAGV+S N+TLGVPR+KEIIN SK P
Sbjct: 1025 AQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPI 1084
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVL-YI--ILRPATHYQVELISGARRVASLR 248
+T L DA+ A+ V R+E T L ++ YI + P + + +S R+ LR
Sbjct: 1085 ITAQL--DMDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLS-LERIRLLR 1141
Query: 249 L 249
L
Sbjct: 1142 L 1142
>UNIPROTKB|O14802 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=NAS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=NAS] [GO:0045087 "innate immune response" evidence=IMP]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IMP] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:CH471083 GO:GO:0045087 GO:GO:0051607 Gene3D:2.40.40.20
InterPro:IPR009010 Reactome:REACT_1788 GO:GO:0005666 GO:GO:0003899
GO:GO:0032728 KO:K03018 GO:GO:0006386 GO:GO:0006385 eggNOG:COG0086
GO:GO:0032549 HOVERGEN:HBG004339 CTD:11128 HOGENOM:HOG000222974
OMA:PRRPLIF OrthoDB:EOG4QVCB4 PANTHER:PTHR19376:SF15 EMBL:AF021351
EMBL:AL512628 EMBL:BC041089 EMBL:AY091459 IPI:IPI00024163
RefSeq:NP_008986.2 UniGene:Hs.436896 ProteinModelPortal:O14802
SMR:O14802 IntAct:O14802 STRING:O14802 PhosphoSite:O14802
PaxDb:O14802 PRIDE:O14802 Ensembl:ENST00000372371 GeneID:11128
KEGG:hsa:11128 UCSC:uc001jzn.3 GeneCards:GC10M079729
HGNC:HGNC:30074 HPA:HPA037926 MIM:607694 MIM:614258
neXtProt:NX_O14802 Orphanet:88637 Orphanet:77295
PharmGKB:PA134900426 InParanoid:O14802 PhylomeDB:O14802
ChiTaRS:POLR3A GenomeRNAi:11128 NextBio:42292 ArrayExpress:O14802
Bgee:O14802 CleanEx:HS_POLR3A Genevestigator:O14802
GermOnline:ENSG00000148606 Uniprot:O14802
Length = 1390
Score = 344 (126.2 bits), Expect = 1.7e-51, Sum P(2) = 1.7e-51
Identities = 67/124 (54%), Positives = 87/124 (70%)
Query: 5 KQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 64
++T E + + L+ RD G + + L + N+ M + GSKGS INISQ+IACVGQQ +
Sbjct: 745 EETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAI 804
Query: 65 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 124
G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M GREGL+DTAVK
Sbjct: 805 SGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVK 864
Query: 125 TAET 128
TAET
Sbjct: 865 TAET 868
Score = 235 (87.8 bits), Expect = 1.7e-51, Sum P(2) = 1.7e-51
Identities = 59/121 (48%), Positives = 75/121 (61%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PG VGAL AQS+GEP TQMTL TFHFAGV+S N+TLGVPR+KEIIN SK P
Sbjct: 1025 AQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPI 1084
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVL-YI--ILRPATHYQVELISGARRVASLR 248
+T L DA+ A+ V R+E T L ++ YI + P + + +S R+ LR
Sbjct: 1085 ITAQLDKDD--DADYARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLS-LERIRLLR 1141
Query: 249 L 249
L
Sbjct: 1142 L 1142
>FB|FBgn0030687 [details] [associations]
symbol:CG17209 species:7227 "Drosophila melanogaster"
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISS] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:AE014298 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
GO:GO:0032549 GeneTree:ENSGT00700000104490 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:NP_001096987.2 UniGene:Dm.14839
ProteinModelPortal:A8JUY3 SMR:A8JUY3 STRING:A8JUY3
EnsemblMetazoa:FBtr0300811 GeneID:32524 KEGG:dme:Dmel_CG17209
FlyBase:FBgn0030687 OrthoDB:EOG4BNZSM PhylomeDB:A8JUY3
GenomeRNAi:32524 NextBio:778916 Bgee:A8JUY3 Uniprot:A8JUY3
Length = 1383
Score = 350 (128.3 bits), Expect = 3.4e-51, Sum P(2) = 3.4e-51
Identities = 68/124 (54%), Positives = 89/124 (71%)
Query: 5 KQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 64
++T E+ + R L+ R++ + L N+ M ++GSKGSNINISQ+IACVGQQ +
Sbjct: 743 EETLESVMLRELSAIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQQAI 802
Query: 65 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 124
GKR+P GF R LPHF + P +RGFV+NS+ +GLTP+EFFFH M GREGL+DTAVK
Sbjct: 803 SGKRVPNGFENRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVK 862
Query: 125 TAET 128
TAET
Sbjct: 863 TAET 866
Score = 226 (84.6 bits), Expect = 3.4e-51, Sum P(2) = 3.4e-51
Identities = 53/116 (45%), Positives = 69/116 (59%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PG VGA+AAQS+GEP TQMTL TFHFAGV+S N+T GVPR+ EIIN +K P +T
Sbjct: 1021 PGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIINATKTISTPIITAE 1080
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKVLYIILRPATHYQVELISGARRVASLRLFG 251
L + E A+ V R+E TTL ++ + Y L G +A ++L G
Sbjct: 1081 L--ENCHSMEFARQVKARIEKTTLAELSSYVEVVCGPYSCYLAIGVD-MARIKLLG 1133
>ASPGD|ASPL0000047704 [details] [associations]
symbol:AN10316 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EnsemblFungi:CADANIAT00009238 Uniprot:C8VPJ2
Length = 1445
Score = 351 (128.6 bits), Expect = 4.3e-50, Sum P(2) = 4.3e-50
Identities = 68/123 (55%), Positives = 89/123 (72%)
Query: 6 QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVE 65
QT ENQ++ IL+ R + G L++YN+ M +GSKGS+IN+SQ++A VGQQ +
Sbjct: 761 QTMENQLSGILSKVRQQAGDECIAQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIG 820
Query: 66 GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 125
G+R+ GF+ RTLPHF K+ P S+GFV NS+ +GL P EF FHAM GREGL+DTAVKT
Sbjct: 821 GQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSFFSGLLPYEFIFHAMSGREGLVDTAVKT 880
Query: 126 AET 128
AET
Sbjct: 881 AET 883
Score = 215 (80.7 bits), Expect = 4.3e-50, Sum P(2) = 4.3e-50
Identities = 45/95 (47%), Positives = 63/95 (66%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PG VGA+ AQS+GEP TQMTL TFHFAGV+ ++T GVPR+KEIIN SK+ P
Sbjct: 1062 AQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPV 1121
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVLYII 226
++ L + R+ A+ R+E T LR +++ +
Sbjct: 1122 ISCELVEK--RNIVAARMAKGRIEKTFLRDIIHYV 1154
Score = 36 (17.7 bits), Expect = 6.1e-17, Sum P(2) = 6.1e-17
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 78 LPHFIKDDYGPESRGFVE 95
+P K D G RGFV+
Sbjct: 340 VPGLNKADLGKPIRGFVQ 357
>CGD|CAL0002215 [details] [associations]
symbol:orf19.3103 species:5476 "Candida albicans" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 CGD:CAL0002215 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AACQ01000086 KO:K03018 eggNOG:COG0086
GO:GO:0032549 PANTHER:PTHR19376:SF15 RefSeq:XP_715412.1
ProteinModelPortal:Q5A0Z3 STRING:Q5A0Z3 GeneID:3642908
KEGG:cal:CaO19.3103 Uniprot:Q5A0Z3
Length = 1448
Score = 338 (124.0 bits), Expect = 4.5e-50, Sum P(2) = 4.5e-50
Identities = 63/124 (50%), Positives = 86/124 (69%)
Query: 5 KQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 64
+QT E ++ +L+ R++ G + L N M GSKGS +N+SQ++A VGQQ +
Sbjct: 754 EQTLEAKIGGLLSKVREEVGDVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQII 813
Query: 65 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 124
G R+P GF+ R+LPHF K+ P+S+GFV NS+ +GLTP EF FHA+ GREGL+DTAVK
Sbjct: 814 SGHRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVK 873
Query: 125 TAET 128
TAET
Sbjct: 874 TAET 877
Score = 228 (85.3 bits), Expect = 4.5e-50, Sum P(2) = 4.5e-50
Identities = 57/111 (51%), Positives = 65/111 (58%)
Query: 122 AVKTAETAC-----NAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPR 176
AVKT C A+ PG VGA+ AQS+GEP TQMTL TFHFAGV+S NVTLGVPR
Sbjct: 1058 AVKTFLEQCLYKYSRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPR 1117
Query: 177 LKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLC-RLEHTTLRKVLYII 226
+KEIIN SK P + L D E A V R+E T L V + I
Sbjct: 1118 IKEIINASKVISTPIINAVLVND---DDEIAARVAKGRIEKTLLEDVAFYI 1165
Score = 40 (19.1 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 24/87 (27%), Positives = 42/87 (48%)
Query: 13 NRILN-DARDKTGGSAKKSL-TEYN-NLKAMVVAGSKGSNINISQVIACVGQQNVEGKRI 69
N ++N DA++KT KK L E + N +V+ GSK +++ + ++ G
Sbjct: 617 NVVINLDAKNKTFHPPKKGLPNEMSPNDGFVVIRGSK--------ILSGLMDKSTLGD-- 666
Query: 70 PFGFRKRTLPHFIKDDYGPESRGFVEN 96
G +K ++ + I DYGP+ N
Sbjct: 667 --G-KKHSVFYTILRDYGPQEAAAAMN 690
>POMBASE|SPBC651.08c [details] [associations]
symbol:rpc1 "DNA-directed RNA polymerase III complex
large subunit Rpc1 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISO] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
PomBase:SPBC651.08c GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 KO:K03018 OrthoDB:EOG4X3M8C eggNOG:COG0086
GO:GO:0032549 HOGENOM:HOG000222974 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:DQ156227 PIR:T40607 RefSeq:NP_595506.1
ProteinModelPortal:O94666 STRING:O94666 EnsemblFungi:SPBC651.08c.1
GeneID:2541094 KEGG:spo:SPBC651.08c NextBio:20802207 Uniprot:O94666
Length = 1405
Score = 340 (124.7 bits), Expect = 8.5e-50, Sum P(2) = 8.5e-50
Identities = 65/122 (53%), Positives = 85/122 (69%)
Query: 7 TFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEG 66
T E +++ L+ RD G L N+ M GSKGS IN+SQ++ACVGQQ + G
Sbjct: 741 TLEAKISSTLSKVRDDVGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQIISG 800
Query: 67 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 126
KR+P GF+ R+LPHF K+ P ++GFV NS+ +GLTP+EF FHA+ GREGL+DTAVKTA
Sbjct: 801 KRVPDGFQDRSLPHFHKNSKHPLAKGFVSNSFYSGLTPTEFLFHAISGREGLVDTAVKTA 860
Query: 127 ET 128
ET
Sbjct: 861 ET 862
Score = 223 (83.6 bits), Expect = 8.5e-50, Sum P(2) = 8.5e-50
Identities = 55/110 (50%), Positives = 67/110 (60%)
Query: 127 ETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKK 186
E AK PG VGA+ AQS+GEP TQMTL TFHFAGV+++ TLGVPR+KEIIN +K
Sbjct: 1034 EKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAAQT-TLGVPRIKEIINAAKT 1092
Query: 187 PKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKVL-YI--ILRPATHY 233
P +T L RD A+ V R+E T L+ V YI + P T Y
Sbjct: 1093 ISTPIITGQLIND--RDERSARVVKGRIEKTYLKDVTSYIEEVYGPVTTY 1140
>SGD|S000005642 [details] [associations]
symbol:RPO31 "RNA polymerase III largest subunit C160"
species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=IDA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 SGD:S000005642
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:X90518
EMBL:X94335 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005666
GO:GO:0003899 Reactome:REACT_83470 KO:K03018 OrthoDB:EOG4X3M8C
eggNOG:COG0086 GO:GO:0032549 Reactome:REACT_87991 GO:GO:0042797
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222974
PANTHER:PTHR19376:SF15 EMBL:X03129 EMBL:Z75024 PIR:A00694
RefSeq:NP_014759.1 ProteinModelPortal:P04051 SMR:P04051
DIP:DIP-612N IntAct:P04051 MINT:MINT-557787 STRING:P04051
PaxDb:P04051 PeptideAtlas:P04051 EnsemblFungi:YOR116C GeneID:854283
KEGG:sce:YOR116C CYGD:YOR116c OMA:CINELDN NextBio:976257
Genevestigator:P04051 GermOnline:YOR116C Uniprot:P04051
Length = 1460
Score = 334 (122.6 bits), Expect = 9.7e-50, Sum P(2) = 9.7e-50
Identities = 62/124 (50%), Positives = 86/124 (69%)
Query: 5 KQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 64
+QT E ++ +L+ R++ G L +N M GSKGS +N+SQ++A VGQQ +
Sbjct: 759 EQTLEAKIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQII 818
Query: 65 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 124
G R+P GF+ R+LPHF K+ P+S+GFV NS+ +GL+P EF FHA+ GREGL+DTAVK
Sbjct: 819 SGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVK 878
Query: 125 TAET 128
TAET
Sbjct: 879 TAET 882
Score = 229 (85.7 bits), Expect = 9.7e-50, Sum P(2) = 9.7e-50
Identities = 49/95 (51%), Positives = 60/95 (63%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PG +GA+ AQS+GEP TQMTL TFHFAGV+S NVTLGVPR+KEIIN SK P
Sbjct: 1081 ARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPI 1140
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVLYII 226
+ L D A+ V R+E T L V + +
Sbjct: 1141 INAVLVND--NDERAARVVKGRVEKTLLSDVAFYV 1173
Score = 36 (17.7 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 53 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPE 89
SQ+++ V ++V G G +K ++ + I DYGP+
Sbjct: 657 SQILSGVMDKSVLGD----G-KKHSVFYTILRDYGPQ 688
>GENEDB_PFALCIPARUM|PF13_0150 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase 3
largest subunit" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 338 (124.0 bits), Expect = 7.0e-49, Sum P(2) = 7.0e-49
Identities = 70/125 (56%), Positives = 88/125 (70%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L++T E +V IL+D R+ G + + L N M +G+KG+ INI+Q+IACVGQQN
Sbjct: 855 LEETLEIKVKSILDDLRNDAGKTCNQYLHYLNKPLIMFNSGAKGALINIAQMIACVGQQN 914
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
V G+RI GF RTLPHF ESRGFV+NS+ GL+P+EFFFH M GREGL+DTAV
Sbjct: 915 VAGQRIQNGFINRTLPHFHFHCKDSESRGFVQNSFYTGLSPTEFFFHTMSGREGLVDTAV 974
Query: 124 KTAET 128
KTAET
Sbjct: 975 KTAET 979
Score = 222 (83.2 bits), Expect = 7.0e-49, Sum P(2) = 7.0e-49
Identities = 48/91 (52%), Positives = 64/91 (70%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PG+ VG+++AQS+GEP TQMTL TFHFAGV+S NVTLGVPR+KEIIN S + P L +
Sbjct: 1790 PGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASNSIQTPILNIP 1849
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV-LYI 225
L + + A + +LE TT+R + +YI
Sbjct: 1850 L--EVNDNYNFALMMKSKLEKTTIRDICMYI 1878
>UNIPROTKB|Q8IE49 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed
RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 338 (124.0 bits), Expect = 7.0e-49, Sum P(2) = 7.0e-49
Identities = 70/125 (56%), Positives = 88/125 (70%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L++T E +V IL+D R+ G + + L N M +G+KG+ INI+Q+IACVGQQN
Sbjct: 855 LEETLEIKVKSILDDLRNDAGKTCNQYLHYLNKPLIMFNSGAKGALINIAQMIACVGQQN 914
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
V G+RI GF RTLPHF ESRGFV+NS+ GL+P+EFFFH M GREGL+DTAV
Sbjct: 915 VAGQRIQNGFINRTLPHFHFHCKDSESRGFVQNSFYTGLSPTEFFFHTMSGREGLVDTAV 974
Query: 124 KTAET 128
KTAET
Sbjct: 975 KTAET 979
Score = 222 (83.2 bits), Expect = 7.0e-49, Sum P(2) = 7.0e-49
Identities = 48/91 (52%), Positives = 64/91 (70%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 195
PG+ VG+++AQS+GEP TQMTL TFHFAGV+S NVTLGVPR+KEIIN S + P L +
Sbjct: 1790 PGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASNSIQTPILNIP 1849
Query: 196 LTGQAARDAEKAKNVLCRLEHTTLRKV-LYI 225
L + + A + +LE TT+R + +YI
Sbjct: 1850 L--EVNDNYNFALMMKSKLEKTTIRDICMYI 1878
>UNIPROTKB|F1NJE0 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF04998 Pfam:PF05000 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:AADN02014782 EMBL:AADN02014783
IPI:IPI00819994 Ensembl:ENSGALT00000037150 OMA:QKKMARV
ArrayExpress:F1NJE0 Uniprot:F1NJE0
Length = 917
Score = 250 (93.1 bits), Expect = 5.0e-40, Sum P(2) = 5.0e-40
Identities = 56/129 (43%), Positives = 77/129 (59%)
Query: 1 MLALKQTFENQVNRILNDARDKTGG-SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACV 59
M+ LK F+ +VN N+ +S E NNL+ MV +G+KGS +N Q+ +
Sbjct: 62 MVDLK--FKEEVNNYNNEVNKVCMPFGLHRSFPE-NNLQLMVQSGAKGSTVNTVQISCLL 118
Query: 60 GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLI 119
GQ +EG+R P ++LP F D+ P S GFV +L G+ PSEFFFH M GREGL+
Sbjct: 119 GQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLV 178
Query: 120 DTAVKTAET 128
DTAVKT+ +
Sbjct: 179 DTAVKTSRS 187
Score = 216 (81.1 bits), Expect = 5.0e-40, Sum P(2) = 5.0e-40
Identities = 49/101 (48%), Positives = 65/101 (64%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAPSL 192
C PGE VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K P +
Sbjct: 409 CDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMM 468
Query: 193 TVFLTGQAARDAEKAKNVLCRLEHTTLRKVLYII-LRPATH 232
+V + G + +K K + +L L +VL + L + H
Sbjct: 469 SVPVLG-TKKAHKKVKQLKKQLTRVCLAEVLQKVELEESLH 508
Score = 42 (19.8 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 11/62 (17%), Positives = 28/62 (45%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
++ +TFE+ V +N K+ G + + LK ++ + S + + + + Q
Sbjct: 362 SVSETFESGVEDYINKRECKSRGGCMQPALSSDRLKDLLYLKWQRSLCDPGEAVGLLAAQ 421
Query: 63 NV 64
++
Sbjct: 422 SI 423
>UNIPROTKB|E1BIX2 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11 CTD:25885
GeneTree:ENSGT00550000074861 EMBL:DAAA02031123 IPI:IPI00714586
RefSeq:NP_001179805.1 UniGene:Bt.52712 PRIDE:E1BIX2
Ensembl:ENSBTAT00000008496 GeneID:536316 KEGG:bta:536316
NextBio:20876927 Uniprot:E1BIX2
Length = 1717
Score = 243 (90.6 bits), Expect = 9.5e-39, Sum P(2) = 9.5e-39
Identities = 54/148 (36%), Positives = 79/148 (53%)
Query: 1 MLALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 60
M+ LK F+ +VN N+ NNL+ MV +G+KGS +N Q+ +G
Sbjct: 860 MIDLK--FKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLG 917
Query: 61 QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
Q +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M GREGL+D
Sbjct: 918 QIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVD 977
Query: 121 TAVKTAETACNAKCAPGEMVGALAAQSL 148
TAVKT+ + +C + G + L
Sbjct: 978 TAVKTSRSGYLQRCIIKHLEGLVVQYDL 1005
Score = 218 (81.8 bits), Expect = 9.5e-39, Sum P(2) = 9.5e-39
Identities = 47/84 (55%), Positives = 58/84 (69%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAP-- 190
C PGE VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K P
Sbjct: 1205 CDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMM 1264
Query: 191 SLTVFLTGQAARDAEKAKNVLCRL 214
S+ VF T +A + + K L R+
Sbjct: 1265 SVPVFNTKKALKKVKSLKKQLTRV 1288
>TAIR|locus:2076661 [details] [associations]
symbol:NRPA1 "nuclear RNA polymerase A1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA] [GO:0006406
"mRNA export from nucleus" evidence=RCA] [GO:0006606 "protein
import into nucleus" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0009506 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
EMBL:AL049660 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 HSSP:P04050 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 IPI:IPI00546513
PIR:T06754 RefSeq:NP_191325.1 UniGene:At.50286
ProteinModelPortal:Q9SVY0 SMR:Q9SVY0 IntAct:Q9SVY0 STRING:Q9SVY0
PaxDb:Q9SVY0 PRIDE:Q9SVY0 EnsemblPlants:AT3G57660.1 GeneID:824935
KEGG:ath:AT3G57660 TAIR:At3g57660 InParanoid:Q9SVY0
PhylomeDB:Q9SVY0 ProtClustDB:CLSN2684581 Genevestigator:Q9SVY0
Uniprot:Q9SVY0
Length = 1670
Score = 251 (93.4 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
Identities = 50/123 (40%), Positives = 77/123 (62%)
Query: 12 VNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPF 71
+N +L+D KT G N + M ++G+KGS +N Q+ + +GQQ++EGKR+P
Sbjct: 921 MNDLLSDGLLKTPGR--------NCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPR 972
Query: 72 GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETACN 131
+TLP F D+ P + GF+ + +L+GL P E++FH M GREGL+DTAVKT+ +
Sbjct: 973 MVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYL 1032
Query: 132 AKC 134
+C
Sbjct: 1033 QRC 1035
Score = 208 (78.3 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
Identities = 48/106 (45%), Positives = 65/106 (61%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTV 194
PGE VG LAAQS+GEP+TQMTLNTFH AG NVTLG+PRL+EI+ + K P +T
Sbjct: 1154 PGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAANIKTPIMTC 1213
Query: 195 -FLTGQAARDAEKAKNVLCRLEHTTLRKVLYIILRPATHYQVELIS 239
L G+ DA + L ++ + K + + + P T Y+ E+ S
Sbjct: 1214 PLLKGKTKEDANDITDRLRKITVADIIKSMELSVVPYTVYENEVCS 1259
Score = 36 (17.7 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 6 QTFENQVNRILNDARDKTGGSAKKSLTEYNN 36
Q +++ RIL + + S +S+ Y N
Sbjct: 883 QDMRSRIERILYEDGESALASLDRSIVNYLN 913
>RGD|620824 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISO;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IDA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:620824
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 KO:K02999 PANTHER:PTHR19376:SF11 CTD:25885
HOGENOM:HOG000205401 HOVERGEN:HBG017741 OrthoDB:EOG41VK23
EMBL:AF025425 IPI:IPI00199160 PIR:T14103 RefSeq:NP_113960.1
UniGene:Rn.24877 ProteinModelPortal:O54889 STRING:O54889
PhosphoSite:O54889 PRIDE:O54889 GeneID:83581 KEGG:rno:83581
UCSC:RGD:620824 InParanoid:O54889 NextBio:616111
ArrayExpress:O54889 Genevestigator:O54889 Uniprot:O54889
Length = 1716
Score = 240 (89.5 bits), Expect = 1.5e-38, Sum P(2) = 1.5e-38
Identities = 53/148 (35%), Positives = 79/148 (53%)
Query: 1 MLALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 60
M+ +K F+ +VN N+ NNL+ MV +G+KGS +N Q+ +G
Sbjct: 867 MIDMK--FKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLG 924
Query: 61 QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
Q +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M GREGL+D
Sbjct: 925 QIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVD 984
Query: 121 TAVKTAETACNAKCAPGEMVGALAAQSL 148
TAVKT+ + +C + G + L
Sbjct: 985 TAVKTSRSGYLQRCIIKHLEGLVIQYDL 1012
Score = 219 (82.2 bits), Expect = 1.5e-38, Sum P(2) = 1.5e-38
Identities = 48/84 (57%), Positives = 58/84 (69%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAP-- 190
C PGE VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K P
Sbjct: 1212 CDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMM 1271
Query: 191 SLTVFLTGQAARDAEKAKNVLCRL 214
S+ VF T +A R + K L R+
Sbjct: 1272 SVPVFNTKKALRRVKSLKKQLTRV 1295
Score = 52 (23.4 bits), Expect = 7.6e-19, Sum P(2) = 7.6e-19
Identities = 18/76 (23%), Positives = 41/76 (53%)
Query: 3 ALKQTFENQ--VNRILNDARDKTGGSAKKSLTEYNN-LKAMVVAGSKGSNI-NI----SQ 54
AL+ +E + ++R L + D + ++ L EY + + + GS+G+++ N+ S+
Sbjct: 131 ALQAVYELERILSRFLEETSDPSAFEIQEELEEYTSKILQNNLLGSQGAHVKNVCESRSK 190
Query: 55 VIACVGQQNVEGKRIP 70
++A + ++ KR P
Sbjct: 191 LVAHFWKTHMAAKRCP 206
>UNIPROTKB|G3V7B7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CH473957
GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 UniGene:Rn.24877
Ensembl:ENSRNOT00000013587 Uniprot:G3V7B7
Length = 1716
Score = 240 (89.5 bits), Expect = 1.5e-38, Sum P(2) = 1.5e-38
Identities = 53/148 (35%), Positives = 79/148 (53%)
Query: 1 MLALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 60
M+ +K F+ +VN N+ NNL+ MV +G+KGS +N Q+ +G
Sbjct: 867 MIDMK--FKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLG 924
Query: 61 QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
Q +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M GREGL+D
Sbjct: 925 QIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVD 984
Query: 121 TAVKTAETACNAKCAPGEMVGALAAQSL 148
TAVKT+ + +C + G + L
Sbjct: 985 TAVKTSRSGYLQRCIIKHLEGLVIQYDL 1012
Score = 219 (82.2 bits), Expect = 1.5e-38, Sum P(2) = 1.5e-38
Identities = 48/84 (57%), Positives = 58/84 (69%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAP-- 190
C PGE VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K P
Sbjct: 1212 CDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMM 1271
Query: 191 SLTVFLTGQAARDAEKAKNVLCRL 214
S+ VF T +A R + K L R+
Sbjct: 1272 SVPVFNTKKALRRVKSLKKQLTRV 1295
Score = 52 (23.4 bits), Expect = 7.6e-19, Sum P(2) = 7.6e-19
Identities = 18/76 (23%), Positives = 41/76 (53%)
Query: 3 ALKQTFENQ--VNRILNDARDKTGGSAKKSLTEYNN-LKAMVVAGSKGSNI-NI----SQ 54
AL+ +E + ++R L + D + ++ L EY + + + GS+G+++ N+ S+
Sbjct: 131 ALQAVYELERILSRFLEETSDPSAFEIQEELEEYTSKILQNNLLGSQGAHVKNVCESRSK 190
Query: 55 VIACVGQQNVEGKRIP 70
++A + ++ KR P
Sbjct: 191 LVAHFWKTHMAAKRCP 206
>UNIPROTKB|J9P5G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K02999 PANTHER:PTHR19376:SF11
CTD:25885 GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
RefSeq:XP_532976.3 Ensembl:ENSCAFT00000047500 GeneID:475766
KEGG:cfa:475766 Uniprot:J9P5G4
Length = 1717
Score = 242 (90.2 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 54/148 (36%), Positives = 79/148 (53%)
Query: 1 MLALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 60
M+ LK F+ +VN N+ NNL+ MV +G+KGS +N Q+ +G
Sbjct: 860 MIDLK--FKEEVNHYSNEINKACMPFGLHRQFPDNNLQMMVQSGAKGSTVNTMQISCLLG 917
Query: 61 QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
Q +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M GREGL+D
Sbjct: 918 QIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVD 977
Query: 121 TAVKTAETACNAKCAPGEMVGALAAQSL 148
TAVKT+ + +C + G + L
Sbjct: 978 TAVKTSRSGYLQRCIIKHLEGLVVQYDL 1005
Score = 216 (81.1 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 47/84 (55%), Positives = 58/84 (69%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAP-- 190
C PGE VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K P
Sbjct: 1205 CDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMM 1264
Query: 191 SLTVFLTGQAARDAEKAKNVLCRL 214
S+ VF T +A + + K L R+
Sbjct: 1265 SVPVFNTKKALKRVKSLKKQLTRV 1288
Score = 50 (22.7 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 19/76 (25%), Positives = 38/76 (50%)
Query: 3 ALKQTFENQ--VNRILNDARDKTGGSAKKSLTEYN-NLKAMVVAGSKGSNI-NI----SQ 54
AL+ +E + +NR L + D T ++ L +Y + + G G+++ N+ S+
Sbjct: 131 ALQAVYELERILNRFLEENADPTAFKIQEELEQYTAKIVQNNLLGPHGAHVKNVCDSRSK 190
Query: 55 VIACVGQQNVEGKRIP 70
+IA + ++ KR P
Sbjct: 191 LIAYFWKAHMTAKRCP 206
>UNIPROTKB|F1SVC3 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
OMA:CLLNETT PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:CU570839 Ensembl:ENSSSCT00000009008 Uniprot:F1SVC3
Length = 1723
Score = 241 (89.9 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 54/148 (36%), Positives = 79/148 (53%)
Query: 1 MLALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 60
M+ LK F+ +VN N+ NNL+ MV +G+KGS +N Q+ +G
Sbjct: 864 MIDLK--FKEEVNHHSNEINKACMPLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLG 921
Query: 61 QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
Q +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M GREGL+D
Sbjct: 922 QIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVD 981
Query: 121 TAVKTAETACNAKCAPGEMVGALAAQSL 148
TAVKT+ + +C + G + L
Sbjct: 982 TAVKTSRSGYLQRCIIKHLEGLVVQYDL 1009
Score = 217 (81.4 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 47/84 (55%), Positives = 58/84 (69%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAP-- 190
C PGE VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K P
Sbjct: 1209 CDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMM 1268
Query: 191 SLTVFLTGQAARDAEKAKNVLCRL 214
S+ VF T +A + + K L R+
Sbjct: 1269 SVPVFNTRRALKKVKSLKKQLTRV 1292
>UNIPROTKB|E2R0G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
Ensembl:ENSCAFT00000012228 Uniprot:E2R0G4
Length = 1746
Score = 242 (90.2 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 54/148 (36%), Positives = 79/148 (53%)
Query: 1 MLALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 60
M+ LK F+ +VN N+ NNL+ MV +G+KGS +N Q+ +G
Sbjct: 872 MIDLK--FKEEVNHYSNEINKACMPFGLHRQFPDNNLQMMVQSGAKGSTVNTMQISCLLG 929
Query: 61 QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
Q +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M GREGL+D
Sbjct: 930 QIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVD 989
Query: 121 TAVKTAETACNAKCAPGEMVGALAAQSL 148
TAVKT+ + +C + G + L
Sbjct: 990 TAVKTSRSGYLQRCIIKHLEGLVVQYDL 1017
Score = 216 (81.1 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 47/84 (55%), Positives = 58/84 (69%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAP-- 190
C PGE VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K P
Sbjct: 1217 CDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMM 1276
Query: 191 SLTVFLTGQAARDAEKAKNVLCRL 214
S+ VF T +A + + K L R+
Sbjct: 1277 SVPVFNTKKALKRVKSLKKQLTRV 1300
Score = 47 (21.6 bits), Expect = 5.4e-18, Sum P(2) = 5.4e-18
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 3 ALKQTFENQ--VNRILNDARDKTGGSAKKSLTEYN-NLKAMVVAGSKGSNINI------- 52
AL+ +E + +NR L + D T ++ L +Y + + G G+++ +
Sbjct: 131 ALQAVYELERILNRFLEENADPTAFKIQEELEQYTAKIVQNNLLGPHGAHVEVKNVCDSR 190
Query: 53 SQVIACVGQQNVEGKRIP 70
S++IA + ++ KR P
Sbjct: 191 SKLIAYFWKAHMTAKRCP 208
>UNIPROTKB|E2QXD8 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
EMBL:AAEX03002853 Ensembl:ENSCAFT00000024699 Uniprot:E2QXD8
Length = 1376
Score = 344 (126.2 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 67/124 (54%), Positives = 87/124 (70%)
Query: 5 KQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 64
++T E + + L+ RD G + + L + N+ M + GSKGS INISQ+IACVGQQ +
Sbjct: 748 EETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAI 807
Query: 65 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 124
G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M GREGL+DTAVK
Sbjct: 808 SGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVK 867
Query: 125 TAET 128
TAET
Sbjct: 868 TAET 871
Score = 110 (43.8 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 35/88 (39%), Positives = 49/88 (55%)
Query: 165 VSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKVL- 223
V+S N+TLGVPR+KEIIN SK P +T L DA+ A+ V R+E T L ++
Sbjct: 1044 VASMNITLGVPRIKEIINASKAISTPIITAQLDKDD--DADYARLVKGRIEKTLLGEISE 1101
Query: 224 YI--ILRPATHYQVELISGARRVASLRL 249
YI + P + + +S R+ LRL
Sbjct: 1102 YIEEVFLPDDCFILVKLS-LERIRLLRL 1128
>MGI|MGI:1096397 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009303 "rRNA transcription" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] Reactome:REACT_78136 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 MGI:MGI:1096397 GO:GO:0005654 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086
CleanEx:MM_RPA1 Reactome:REACT_86751 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 CTD:25885 HOGENOM:HOG000205401
HOVERGEN:HBG017741 OrthoDB:EOG41VK23 ChiTaRS:POLR1A EMBL:AF000938
EMBL:BC053744 IPI:IPI00313726 PIR:T13961 RefSeq:NP_033114.3
UniGene:Mm.135581 ProteinModelPortal:O35134 SMR:O35134
STRING:O35134 PhosphoSite:O35134 PaxDb:O35134 PRIDE:O35134
Ensembl:ENSMUST00000055296 GeneID:20019 KEGG:mmu:20019
UCSC:uc009chv.2 GeneTree:ENSGT00550000074861 InParanoid:O35134
NextBio:297531 Bgee:O35134 Genevestigator:O35134
GermOnline:ENSMUSG00000049553 Uniprot:O35134
Length = 1717
Score = 240 (89.5 bits), Expect = 2.5e-38, Sum P(2) = 2.5e-38
Identities = 53/148 (35%), Positives = 79/148 (53%)
Query: 1 MLALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 60
M+ +K F+ +VN N+ NNL+ MV +G+KGS +N Q+ +G
Sbjct: 867 MIDMK--FKEEVNHYSNEINKACMPLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLG 924
Query: 61 QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
Q +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M GREGL+D
Sbjct: 925 QIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVD 984
Query: 121 TAVKTAETACNAKCAPGEMVGALAAQSL 148
TAVKT+ + +C + G + L
Sbjct: 985 TAVKTSRSGYLQRCIIKHLEGLVIQYDL 1012
Score = 217 (81.4 bits), Expect = 2.5e-38, Sum P(2) = 2.5e-38
Identities = 51/93 (54%), Positives = 63/93 (67%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAP-- 190
C PGE VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K P
Sbjct: 1212 CDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMM 1271
Query: 191 SLTVFLTGQAARDAEKAKNVLCRLEHTTLRKVL 223
S+ VF T +A + K K++ RL L +VL
Sbjct: 1272 SVPVFDTKKALK---KVKSLKKRLTRVCLGEVL 1301
Score = 47 (21.6 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
Identities = 17/76 (22%), Positives = 41/76 (53%)
Query: 3 ALKQTFENQ--VNRILNDARDKTGGSAKKSLTEYNN-LKAMVVAGSKGSNI-NI----SQ 54
AL+ +E + ++R L + D + ++ L EY + + + GS+G+++ N+ S+
Sbjct: 131 ALQAVYELERILSRFLEETGDPSAFEIQEELEEYTSKILQNNLLGSQGTHVKNVCESRSK 190
Query: 55 VIACVGQQNVEGKRIP 70
++A + ++ K+ P
Sbjct: 191 LVAQFWKTHMAAKQCP 206
>FB|FBgn0019938 [details] [associations]
symbol:RpI1 "RNA polymerase I subunit" species:7227
"Drosophila melanogaster" [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 EMBL:AE013599 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 EMBL:Y09103 EMBL:AY121632 PIR:T13803
RefSeq:NP_523743.1 UniGene:Dm.8031 ProteinModelPortal:P91875
SMR:P91875 MINT:MINT-1742038 STRING:P91875 PaxDb:P91875
GeneID:36617 KEGG:dme:Dmel_CG10122 CTD:36617 FlyBase:FBgn0019938
InParanoid:P91875 OrthoDB:EOG466T1R GenomeRNAi:36617 NextBio:799515
Bgee:P91875 GermOnline:CG10122 Uniprot:P91875
Length = 1642
Score = 247 (92.0 bits), Expect = 3.6e-38, Sum P(2) = 3.6e-38
Identities = 45/100 (45%), Positives = 66/100 (66%)
Query: 35 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 94
NNL+ MV++G+KGS +N Q+ +GQ +EGKR P ++LP F + P+S GF+
Sbjct: 870 NNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFI 929
Query: 95 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETACNAKC 134
+ ++ G+ P +FFFH M GREGLIDTAVKT+ + +C
Sbjct: 930 DGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRC 969
Score = 208 (78.3 bits), Expect = 3.6e-38, Sum P(2) = 3.6e-38
Identities = 47/93 (50%), Positives = 60/93 (64%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAPSLT 193
APGE VG +AAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K PS+
Sbjct: 1173 APGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMD 1232
Query: 194 VFLTGQAARDAEKAKNVLCRLEHTTLRKVL-YI 225
+ + AEK + L TL +L Y+
Sbjct: 1233 IPIKPGQQHQAEKLR---INLNSVTLANLLEYV 1262
>ZFIN|ZDB-GENE-030131-5286 [details] [associations]
symbol:polr1a "polymerase (RNA) I polypeptide A"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 ZFIN:ZDB-GENE-030131-5286
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861 EMBL:AL929267
EMBL:CU694378 IPI:IPI00934858 Ensembl:ENSDART00000114501
ArrayExpress:E7F710 Bgee:E7F710 Uniprot:E7F710
Length = 1710
Score = 247 (92.0 bits), Expect = 8.2e-38, Sum P(2) = 8.2e-38
Identities = 60/149 (40%), Positives = 82/149 (55%)
Query: 1 MLALKQTFE-NQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACV 59
M+ LK E NQVN +N G +S E NNL+ MV +G+KGS +N Q+ +
Sbjct: 856 MVDLKFKEEVNQVNNNINKVCMPLG--LHRSFPE-NNLQMMVQSGAKGSTVNTMQISCLL 912
Query: 60 GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLI 119
GQ +EG+R P ++LP F + P S GFV +L G+ P EFFFH M GREGL+
Sbjct: 913 GQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPPEFFFHCMAGREGLV 972
Query: 120 DTAVKTAETACNAKCAPGEMVGALAAQSL 148
DTAVKT+ + +C + G + L
Sbjct: 973 DTAVKTSRSGYLQRCVIKHLEGLVVQYDL 1001
Score = 205 (77.2 bits), Expect = 8.2e-38, Sum P(2) = 8.2e-38
Identities = 43/86 (50%), Positives = 58/86 (67%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAP 190
A C PGE VG +AAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K P
Sbjct: 1199 ALCDPGEAVGLVAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLVASSNIKTP 1258
Query: 191 --SLTVFLTGQAARDAEKAKNVLCRL 214
S+ V + +A + + + + R+
Sbjct: 1259 MMSIPVVMNKKALKQVKTLRKKITRV 1284
>UNIPROTKB|B9ZVN9 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AC009309 PANTHER:PTHR19376:SF11 HGNC:HGNC:17264
HOGENOM:HOG000205401 ChiTaRS:POLR1A EMBL:AC012511 IPI:IPI00916060
ProteinModelPortal:B9ZVN9 STRING:B9ZVN9 Ensembl:ENST00000409681
ArrayExpress:B9ZVN9 Bgee:B9ZVN9 Uniprot:B9ZVN9
Length = 1659
Score = 238 (88.8 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 53/148 (35%), Positives = 79/148 (53%)
Query: 1 MLALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 60
M+ LK F+ +VN N+ N+L+ MV +G+KGS +N Q+ +G
Sbjct: 860 MIDLK--FKEEVNHYSNEINKACMPFGLHRQFPENSLQMMVQSGAKGSTVNTMQISCLLG 917
Query: 61 QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
Q +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M GREGL+D
Sbjct: 918 QIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVD 977
Query: 121 TAVKTAETACNAKCAPGEMVGALAAQSL 148
TAVKT+ + +C + G + L
Sbjct: 978 TAVKTSRSGYLQRCIIKHLEGLVVQYDL 1005
Score = 211 (79.3 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 46/84 (54%), Positives = 57/84 (67%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAP-- 190
C PGE VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K P
Sbjct: 1205 CEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMM 1264
Query: 191 SLTVFLTGQAARDAEKAKNVLCRL 214
S+ V T +A + + K L R+
Sbjct: 1265 SVPVLNTKKALKRVKSLKKQLTRV 1288
Score = 58 (25.5 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 19/76 (25%), Positives = 40/76 (52%)
Query: 3 ALKQTFENQ--VNRILNDARDKTGGSAKKSLTEYNN-LKAMVVAGSKGSNI-NI----SQ 54
AL+ +E + +NR L + D + ++ L +Y + + GS+G+++ N+ S+
Sbjct: 131 ALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVCESKSK 190
Query: 55 VIACVGQQNVEGKRIP 70
+IA + ++ KR P
Sbjct: 191 LIALFWKAHMNAKRCP 206
>UNIPROTKB|O95602 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase I subunit RPA1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=NAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=TAS] [GO:0006361 "transcription
initiation from RNA polymerase I promoter" evidence=TAS]
[GO:0006362 "transcription elongation from RNA polymerase I
promoter" evidence=TAS] [GO:0006363 "termination of RNA polymerase
I transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CH471053
GO:GO:0005654 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0009303
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 EMBL:U33460 EMBL:AH007280 EMBL:AK302458
EMBL:BC117173 EMBL:BC126303 EMBL:AL117467 IPI:IPI00031960
PIR:T17252 RefSeq:NP_056240.2 UniGene:Hs.531818
ProteinModelPortal:O95602 SMR:O95602 DIP:DIP-27537N IntAct:O95602
MINT:MINT-111492 STRING:O95602 PhosphoSite:O95602
SWISS-2DPAGE:O95602 PaxDb:O95602 PRIDE:O95602
Ensembl:ENST00000263857 GeneID:25885 KEGG:hsa:25885 UCSC:uc002sqs.3
CTD:25885 GeneCards:GC02M086253 H-InvDB:HIX0002233 HGNC:HGNC:17264
HPA:CAB010145 neXtProt:NX_O95602 PharmGKB:PA134891380
HOGENOM:HOG000205401 HOVERGEN:HBG017741 InParanoid:O95602
OrthoDB:EOG41VK23 ChiTaRS:POLR1A GenomeRNAi:25885 NextBio:47304
PMAP-CutDB:O95602 ArrayExpress:O95602 Bgee:O95602 CleanEx:HS_POLR1A
Genevestigator:O95602 GermOnline:ENSG00000068654 Uniprot:O95602
Length = 1720
Score = 238 (88.8 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 53/148 (35%), Positives = 79/148 (53%)
Query: 1 MLALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 60
M+ LK F+ +VN N+ N+L+ MV +G+KGS +N Q+ +G
Sbjct: 860 MIDLK--FKEEVNHYSNEINKACMPFGLHRQFPENSLQMMVQSGAKGSTVNTMQISCLLG 917
Query: 61 QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
Q +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M GREGL+D
Sbjct: 918 QIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVD 977
Query: 121 TAVKTAETACNAKCAPGEMVGALAAQSL 148
TAVKT+ + +C + G + L
Sbjct: 978 TAVKTSRSGYLQRCIIKHLEGLVVQYDL 1005
Score = 211 (79.3 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 46/84 (54%), Positives = 57/84 (67%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAP-- 190
C PGE VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K P
Sbjct: 1205 CEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMM 1264
Query: 191 SLTVFLTGQAARDAEKAKNVLCRL 214
S+ V T +A + + K L R+
Sbjct: 1265 SVPVLNTKKALKRVKSLKKQLTRV 1288
Score = 58 (25.5 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 19/76 (25%), Positives = 40/76 (52%)
Query: 3 ALKQTFENQ--VNRILNDARDKTGGSAKKSLTEYNN-LKAMVVAGSKGSNI-NI----SQ 54
AL+ +E + +NR L + D + ++ L +Y + + GS+G+++ N+ S+
Sbjct: 131 ALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVCESKSK 190
Query: 55 VIACVGQQNVEGKRIP 70
+IA + ++ KR P
Sbjct: 191 LIALFWKAHMNAKRCP 206
>WB|WBGene00012999 [details] [associations]
symbol:rpoa-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
HSSP:P04050 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:Z83219 EMBL:AL032648 EMBL:Z93392
PIR:A88355 PIR:T19606 RefSeq:NP_001022450.1
ProteinModelPortal:G5ED21 SMR:G5ED21 PRIDE:G5ED21
EnsemblMetazoa:Y48E1A.1a GeneID:175015 KEGG:cel:CELE_Y48E1A.1
CTD:175015 WormBase:Y48E1A.1a NextBio:886412 Uniprot:G5ED21
Length = 1737
Score = 238 (88.8 bits), Expect = 6.0e-37, Sum P(2) = 6.0e-37
Identities = 45/100 (45%), Positives = 63/100 (63%)
Query: 35 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 94
N L+ M+ +G+KGS +N Q+ C+GQ +EGKR+ RTLP F D P + G++
Sbjct: 928 NALQLMIQSGAKGSAVNAIQISGCLGQIELEGKRMAVTIAGRTLPSFRCFDPSPRAGGYI 987
Query: 95 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETACNAKC 134
+ +L G+ P E FFH M GREGLIDTAVKT+ + +C
Sbjct: 988 DQRFLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRC 1027
Score = 206 (77.6 bits), Expect = 6.0e-37, Sum P(2) = 6.0e-37
Identities = 44/89 (49%), Positives = 60/89 (67%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTV 194
PGE VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ SK PS ++
Sbjct: 1231 PGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKSIATPSASI 1290
Query: 195 FLTGQAARDAEKAKNVLCRLEHTTLRKVL 223
+ +RD + ++ L+ L+++L
Sbjct: 1291 AVIAGTSRD--RIDSIKRELDRVYLKQLL 1317
>DICTYBASE|DDB_G0275759 [details] [associations]
symbol:rpa1 "RNA polymerase I, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0275759 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR EMBL:AAFI02000013 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 RefSeq:XP_643519.1 HSSP:P04050
ProteinModelPortal:Q86H36 STRING:Q86H36 PRIDE:Q86H36
EnsemblProtists:DDB0216292 GeneID:8620100 KEGG:ddi:DDB_G0275759
KO:K02999 OMA:CLLNETT ProtClustDB:CLSZ2497252
PANTHER:PTHR19376:SF11 Uniprot:Q86H36
Length = 1615
Score = 248 (92.4 bits), Expect = 5.5e-36, Sum P(2) = 5.5e-36
Identities = 53/122 (43%), Positives = 73/122 (59%)
Query: 25 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 84
G +K + NN M V+G+KGS +N SQV +GQQ +EGKR+P +TLP F
Sbjct: 877 GGQQKPFPK-NNFSLMTVSGAKGSVVNFSQVSCLLGQQELEGKRVPRMVSGKTLPSFQAY 935
Query: 85 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETACNAKCAPGEMVGALA 144
D + GFV + +L G+ P ++FFH M GREGLIDTAVKT+ + +C + G L+
Sbjct: 936 DASARAGGFVMDRFLTGVRPQDYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEG-LS 994
Query: 145 AQ 146
Q
Sbjct: 995 VQ 996
Score = 186 (70.5 bits), Expect = 5.5e-36, Sum P(2) = 5.5e-36
Identities = 40/75 (53%), Positives = 48/75 (64%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLT 193
+PGE VG L AQS+GEP+TQMTLNTFH AG NVTLG+PRL+E+I + KP P L
Sbjct: 1135 SPGESVGLLCAQSIGEPSTQMTLNTFHLAGRGEANVTLGIPRLRELIMTATTKPITP-LM 1193
Query: 194 VFLTGQAARDAEKAK 208
F + E K
Sbjct: 1194 EFQINDSTNKVETEK 1208
>UNIPROTKB|G4NBX7 [details] [associations]
symbol:MGG_01158 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
EMBL:CM001235 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0043581 GO:GO:0003899
KO:K02999 PANTHER:PTHR19376:SF11 RefSeq:XP_003717763.1
ProteinModelPortal:G4NBX7 EnsemblFungi:MGG_01158T0 GeneID:2675173
KEGG:mgr:MGG_01158 Uniprot:G4NBX7
Length = 1719
Score = 219 (82.2 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 43/108 (39%), Positives = 69/108 (63%)
Query: 35 NNLKAMVVAGSKGSNINISQVIAC-VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF 93
N ++AM ++G+KG +N + +I+C +GQQ +EG+R+P ++LP F + + G+
Sbjct: 941 NQMQAMTISGAKGGQVN-ANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFETDIRAGGY 999
Query: 94 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETACNAKCAPGEMVG 141
+ N +L G+ P E++FH M GREGLIDTAVKT+ + +C M G
Sbjct: 1000 IVNRFLTGIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEG 1047
Score = 212 (79.7 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 51/110 (46%), Positives = 69/110 (62%)
Query: 124 KTAETACNAKCA-----PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 178
K AE +AK PGE VG +A QS+GEP+TQMTLNTFH AG S+KNVTLG+PRL+
Sbjct: 1194 KAAEKVLSAKYMRSLVHPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLR 1253
Query: 179 EII-NISKKPKAPSLTVFLTGQAA-RDAEK-AKNV-LCRLEHTTLRKVLY 224
E++ S K PS+T+ L + + D EK AK + + L H + ++
Sbjct: 1254 ELLMTASSKISTPSMTLILNEEMSPADGEKFAKAISMLPLSHVVDKATVF 1303
Score = 45 (20.9 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 20/76 (26%), Positives = 30/76 (39%)
Query: 12 VNRILNDARDKTGGSAKKSLTEYNNLKAMVVAG-----SKGSNINISQVIACVGQQNVEG 66
VN ++++ + T G+A K+L E K G G +N + N+E
Sbjct: 449 VNTLIDNTKSPTQGAAAKALEEGIKQKLEKKEGLFRKNMMGKRVNYAARSVISPDPNIET 508
Query: 67 KRI---PFGFRKRTLP 79
I P RK T P
Sbjct: 509 NEIGVPPVFARKLTYP 524
>UNIPROTKB|F1S2E6 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0045087 "innate immune response" evidence=IEA]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:CU407090 RefSeq:XP_001929395.1 Ensembl:ENSSSCT00000011305
GeneID:100156229 KEGG:ssc:100156229 Uniprot:F1S2E6
Length = 1390
Score = 344 (126.2 bits), Expect = 7.2e-30, P = 7.2e-30
Identities = 67/124 (54%), Positives = 87/124 (70%)
Query: 5 KQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 64
++T E + + L+ RD G + + L + N+ M + GSKGS INISQ+IACVGQQ +
Sbjct: 745 EETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAI 804
Query: 65 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 124
G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M GREGL+DTAVK
Sbjct: 805 SGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVK 864
Query: 125 TAET 128
TAET
Sbjct: 865 TAET 868
Score = 235 (87.8 bits), Expect = 4.4e-19, Sum P(2) = 4.4e-19
Identities = 70/173 (40%), Positives = 92/173 (53%)
Query: 83 KDDYGPESRGFVENSYLAGL---TPSEFFFHAMGGREGLIDTAVKTAETACNAKCAPGEM 139
+D YG G E L L TP++ E ++T + A+ PG
Sbjct: 984 RDKYGINDNGTTEPRVLYQLDRITPTQI--------EKFLETC---RDKYMRAQMEPGSA 1032
Query: 140 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQ 199
VGAL AQS+GEP TQMTL TFHFAGV+S N+TLGVPR+KEIIN SK P +T L
Sbjct: 1033 VGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDKD 1092
Query: 200 AARDAEKAKNVLCRLEHTTLRKVL-YI--ILRPATHYQVELISGARRVASLRL 249
DA+ A+ V R+E T L ++ YI + P + + +S R+ LRL
Sbjct: 1093 D--DADYARLVKGRIEKTLLGEISEYIEEVFLPDDCFILIKLS-LERIRLLRL 1142
Score = 36 (17.7 bits), Expect = 4.4e-19, Sum P(2) = 4.4e-19
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 9 ENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKR 68
+N + IL RD A +++ L A V ++G +I I V G + +
Sbjct: 660 KNNIFYIL--LRDWGQNEAADAMSRLARL-APVYLSNRGFSIGIGDVTPGQGLLKAKYEL 716
Query: 69 IPFGFRK 75
+ G+RK
Sbjct: 717 LNAGYRK 723
>UNIPROTKB|A4IF62 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9913 "Bos taurus" [GO:0045087 "innate immune
response" evidence=ISS] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0032728 KO:K03018 eggNOG:COG0086 GO:GO:0032549
GeneTree:ENSGT00700000104490 HOVERGEN:HBG004339 EMBL:BC134422
IPI:IPI00701819 RefSeq:NP_001077219.1 UniGene:Bt.58772
ProteinModelPortal:A4IF62 STRING:A4IF62 PRIDE:A4IF62
Ensembl:ENSBTAT00000017638 GeneID:540308 KEGG:bta:540308 CTD:11128
HOGENOM:HOG000222974 InParanoid:A4IF62 OMA:PRRPLIF
OrthoDB:EOG4QVCB4 NextBio:20878554 ArrayExpress:A4IF62
PANTHER:PTHR19376:SF15 Uniprot:A4IF62
Length = 1390
Score = 344 (126.2 bits), Expect = 7.2e-30, P = 7.2e-30
Identities = 67/124 (54%), Positives = 87/124 (70%)
Query: 5 KQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 64
++T E + + L+ RD G + + L + N+ M + GSKGS INISQ+IACVGQQ +
Sbjct: 745 EETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAI 804
Query: 65 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 124
G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M GREGL+DTAVK
Sbjct: 805 SGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVK 864
Query: 125 TAET 128
TAET
Sbjct: 865 TAET 868
Score = 236 (88.1 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 70/173 (40%), Positives = 92/173 (53%)
Query: 83 KDDYGPESRGFVENSYLAGL---TPSEFFFHAMGGREGLIDTAVKTAETACNAKCAPGEM 139
+D YG G E L L TP++ E ++T + A+ PG
Sbjct: 984 RDKYGINDNGTTEPRVLYQLDRITPTQI--------EKFLETC---RDKYMRAQMEPGSA 1032
Query: 140 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQ 199
VGAL AQS+GEP TQMTL TFHFAGV+S N+TLGVPR+KEIIN SK P +T L
Sbjct: 1033 VGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDKD 1092
Query: 200 AARDAEKAKNVLCRLEHTTLRKVL-YI--ILRPATHYQVELISGARRVASLRL 249
DA+ A+ V R+E T L ++ YI + P + + +S R+ LRL
Sbjct: 1093 D--DADYARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLS-LERIRLLRL 1142
>UNIPROTKB|J9P629 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 CTD:11128 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:AAEX03002853 RefSeq:XP_536399.2
Ensembl:ENSCAFT00000047369 GeneID:479256 KEGG:cfa:479256
Uniprot:J9P629
Length = 1390
Score = 344 (126.2 bits), Expect = 7.2e-30, P = 7.2e-30
Identities = 67/124 (54%), Positives = 87/124 (70%)
Query: 5 KQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 64
++T E + + L+ RD G + + L + N+ M + GSKGS INISQ+IACVGQQ +
Sbjct: 745 EETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAI 804
Query: 65 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 124
G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M GREGL+DTAVK
Sbjct: 805 SGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVK 864
Query: 125 TAET 128
TAET
Sbjct: 865 TAET 868
Score = 236 (88.1 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 70/173 (40%), Positives = 92/173 (53%)
Query: 83 KDDYGPESRGFVENSYLAGL---TPSEFFFHAMGGREGLIDTAVKTAETACNAKCAPGEM 139
+D YG G E L L TP++ E ++T + A+ PG
Sbjct: 984 RDKYGINDNGTTEPRVLYQLDRITPTQI--------EKFLETC---RDKYMRAQMEPGSA 1032
Query: 140 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQ 199
VGAL AQS+GEP TQMTL TFHFAGV+S N+TLGVPR+KEIIN SK P +T L
Sbjct: 1033 VGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDKD 1092
Query: 200 AARDAEKAKNVLCRLEHTTLRKVL-YI--ILRPATHYQVELISGARRVASLRL 249
DA+ A+ V R+E T L ++ YI + P + + +S R+ LRL
Sbjct: 1093 D--DADYARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLS-LERIRLLRL 1142
>UNIPROTKB|F1NIK7 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045087
"innate immune response" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
IPI:IPI00580235 EMBL:AADN02027942 EMBL:AADN02027940
EMBL:AADN02027941 Ensembl:ENSGALT00000007929 Uniprot:F1NIK7
Length = 1390
Score = 343 (125.8 bits), Expect = 9.2e-30, P = 9.2e-30
Identities = 67/124 (54%), Positives = 87/124 (70%)
Query: 5 KQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 64
++T E + + L+ RD G + + L + N+ M + GSKGS INISQ+IACVGQQ +
Sbjct: 745 EETLEALILKELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAI 804
Query: 65 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 124
G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M GREGL+DTAVK
Sbjct: 805 SGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVK 864
Query: 125 TAET 128
TAET
Sbjct: 865 TAET 868
Score = 230 (86.0 bits), Expect = 1.0e-17, P = 1.0e-17
Identities = 69/173 (39%), Positives = 91/173 (52%)
Query: 83 KDDYGPESRGFVENSYLAGL---TPSEFFFHAMGGREGLIDTAVKTAETACNAKCAPGEM 139
+D YG G E L L TP++ E ++T + A+ PG
Sbjct: 984 RDKYGINDNGTTEPRVLYQLDRITPTQL--------EKFLETC---RDKYMRAQMEPGSA 1032
Query: 140 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQ 199
VGAL AQS+GEP TQMTL TFHFAGV+S N+TLGVPR+KEIIN SK P +T L
Sbjct: 1033 VGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDKD 1092
Query: 200 AARDAEKAKNVLCRLEHTTLRKVL-YI--ILRPATHYQVELISGARRVASLRL 249
D + A+ V R+E T L ++ YI + P + + +S R+ LRL
Sbjct: 1093 D--DPDFARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLS-LERIRLLRL 1142
>UNIPROTKB|Q5ZL98 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 HOVERGEN:HBG004339
CTD:11128 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
PANTHER:PTHR19376:SF15 EMBL:AJ719836 IPI:IPI00580235
RefSeq:NP_001006500.1 UniGene:Gga.11367 ProteinModelPortal:Q5ZL98
STRING:Q5ZL98 PRIDE:Q5ZL98 GeneID:423727 KEGG:gga:423727
InParanoid:Q5ZL98 NextBio:20826153 Uniprot:Q5ZL98
Length = 1390
Score = 343 (125.8 bits), Expect = 9.2e-30, P = 9.2e-30
Identities = 67/124 (54%), Positives = 87/124 (70%)
Query: 5 KQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 64
++T E + + L+ RD G + + L + N+ M + GSKGS INISQ+IACVGQQ +
Sbjct: 745 EETLEALILKELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAI 804
Query: 65 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 124
G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M GREGL+DTAVK
Sbjct: 805 SGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVK 864
Query: 125 TAET 128
TAET
Sbjct: 865 TAET 868
Score = 230 (86.0 bits), Expect = 1.0e-17, P = 1.0e-17
Identities = 69/173 (39%), Positives = 91/173 (52%)
Query: 83 KDDYGPESRGFVENSYLAGL---TPSEFFFHAMGGREGLIDTAVKTAETACNAKCAPGEM 139
+D YG G E L L TP++ E ++T + A+ PG
Sbjct: 984 RDKYGINDNGTTEPRVLYQLDRITPTQL--------EKFLETC---RDKYMRAQMEPGSA 1032
Query: 140 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQ 199
VGAL AQS+GEP TQMTL TFHFAGV+S N+TLGVPR+KEIIN SK P +T L
Sbjct: 1033 VGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDKD 1092
Query: 200 AARDAEKAKNVLCRLEHTTLRKVL-YI--ILRPATHYQVELISGARRVASLRL 249
D + A+ V R+E T L ++ YI + P + + +S R+ LRL
Sbjct: 1093 D--DPDFARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLS-LERIRLLRL 1142
>ZFIN|ZDB-GENE-050208-103 [details] [associations]
symbol:polr3a "polymerase (RNA) III (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
ZFIN:ZDB-GENE-050208-103 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
KO:K03018 GO:GO:0032549 GeneTree:ENSGT00700000104490
PANTHER:PTHR19376:SF15 EMBL:CABZ01084340 EMBL:CABZ01084341
EMBL:CABZ01084342 EMBL:CABZ01084343 EMBL:CABZ01084344
EMBL:CABZ01084345 EMBL:CABZ01084346 IPI:IPI00960980
RefSeq:XP_003199716.1 UniGene:Dr.109694 Ensembl:ENSDART00000105273
GeneID:572258 KEGG:dre:572258 NextBio:20890901 Bgee:E7F5P2
Uniprot:E7F5P2
Length = 1390
Score = 338 (124.0 bits), Expect = 3.1e-29, P = 3.1e-29
Identities = 66/124 (53%), Positives = 87/124 (70%)
Query: 5 KQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 64
++T E + + L+ RD G + + L + N+ M + GSKGS INISQ+IACVGQQ +
Sbjct: 745 EETLEALILKELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAI 804
Query: 65 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 124
G R+P GF R+LPHF K P ++GFV +S+ +GLTP+EFFFH M GREGL+DTAVK
Sbjct: 805 SGSRVPDGFENRSLPHFQKHSKLPAAKGFVADSFYSGLTPTEFFFHTMAGREGLVDTAVK 864
Query: 125 TAET 128
TAET
Sbjct: 865 TAET 868
Score = 228 (85.3 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 68/173 (39%), Positives = 91/173 (52%)
Query: 83 KDDYGPESRGFVENSYLAGL---TPSEFFFHAMGGREGLIDTAVKTAETACNAKCAPGEM 139
+D YG G E L L TP++ E ++T + A+ PG
Sbjct: 984 RDKYGINDNGTTEPKVLYQLDRITPTQL--------EKFLETC---RDKYMRAQMEPGSA 1032
Query: 140 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQ 199
VGAL AQS+GEP TQMTL TFHFAGV+S N+TLGVPR+KEIIN SK P ++ L
Sbjct: 1033 VGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIISANL--D 1090
Query: 200 AARDAEKAKNVLCRLEHTTLRKVL-YI--ILRPATHYQVELISGARRVASLRL 249
D + A+ V R+E T L ++ YI + P + + +S R+ LRL
Sbjct: 1091 TNDDPDFARLVKGRIEKTLLGEISEYIEEVFLPDDTFILVKLS-LDRIRLLRL 1142
>POMBASE|SPBC4C3.05c [details] [associations]
symbol:nuc1 "DNA-directed RNA polymerase I complex large
subunit Nuc1" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IGI] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISO] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0007000 "nucleolus organization" evidence=IMP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 PomBase:SPBC4C3.05c
GO:GO:0005829 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006406
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0034503 GO:GO:0006360
GO:GO:0007000 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999
OMA:CLLNETT PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 EMBL:X14783
EMBL:M37411 PIR:JS0080 RefSeq:NP_596300.1 ProteinModelPortal:P15398
STRING:P15398 EnsemblFungi:SPBC4C3.05c.1 GeneID:2540873
KEGG:spo:SPBC4C3.05c OrthoDB:EOG432464 NextBio:20801989
Uniprot:P15398
Length = 1689
Score = 274 (101.5 bits), Expect = 2.7e-22, P = 2.7e-22
Identities = 52/138 (37%), Positives = 84/138 (60%)
Query: 34 YNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF 93
YN+++ M V+G+KGSN+N+SQ+ +GQQ +EG+R+P ++LP F+ + +S GF
Sbjct: 935 YNHMQTMTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGF 994
Query: 94 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPAT 153
+ + +L G+ P E++FH M GREGLIDTAVKT+ + +C + G +
Sbjct: 995 IASRFLTGIAPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDS 1054
Query: 154 QMTLNTFHFAGVSSKNVT 171
++ FH+ G S +VT
Sbjct: 1055 DGSIVQFHY-GEDSLDVT 1071
Score = 205 (77.2 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 42/79 (53%), Positives = 56/79 (70%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTV 194
PGE VG LA+QS+GEP+TQMTLNTFHFAG +KNVTLG+PRL+EII S + P++T+
Sbjct: 1190 PGESVGVLASQSIGEPSTQMTLNTFHFAGFGAKNVTLGIPRLREIIMTASANIQTPTMTL 1249
Query: 195 FLTGQAARDAEKAKNVLCR 213
L + +K + C+
Sbjct: 1250 RLNDGVS---DKRASAFCK 1265
Score = 36 (17.7 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 71 FGFRKRTLPHFIKDDYGPESRG 92
FG L H + + YGP+ G
Sbjct: 801 FGASAFGLVHSVHELYGPDIAG 822
>CGD|CAL0001661 [details] [associations]
symbol:RPA190 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 CGD:CAL0001661
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AACQ01000244
EMBL:AACQ01000240 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 RefSeq:XP_710723.1 RefSeq:XP_710761.1
ProteinModelPortal:Q59LW3 STRING:Q59LW3 GeneID:3647643
GeneID:3647677 KEGG:cal:CaO19.1839 KEGG:cal:CaO19.9397
Uniprot:Q59LW3
Length = 1665
Score = 266 (98.7 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 52/156 (33%), Positives = 88/156 (56%)
Query: 9 ENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKR 68
+++VN I + K YN+++AM ++G+KGSN+N+SQ++ +GQQ +EG+R
Sbjct: 879 QSKVNAITSQVVSKCVPDGTMKRFPYNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRR 938
Query: 69 IPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 128
+P +TLP F + + G+++ + +G+ P E++FH M GREGLIDTAVKT+ +
Sbjct: 939 VPVMVSGKTLPSFKPFETDARAGGYIKQRFYSGIRPQEYYFHCMAGREGLIDTAVKTSRS 998
Query: 129 ACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAG 164
+C ++ G + TL F + G
Sbjct: 999 GYLQRCLTKQLEGVHVSYDNSVRDADGTLIQFLYGG 1034
Score = 193 (73.0 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 45/121 (37%), Positives = 72/121 (59%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTV 194
PGE VG +A+QS+GEP+TQMTLNTFHFAG + NVTLG+PR++EII S K P +T+
Sbjct: 1170 PGEAVGIIASQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASASIKTPQMTL 1229
Query: 195 FLTGQAARDAEKAKNVLCR-LEHTTLRKVL-YIILRPATHYQVELISGARRVASLRLFGQ 252
+ + E+A + C+ + + + + +++ T V+ + V L+ + +
Sbjct: 1230 PILADV--NDEQA-DAFCKSVARVVMSEFVDKVVVTETTSQDVDGSNSRSYVIGLKFYTK 1286
Query: 253 E 253
E
Sbjct: 1287 E 1287
>UNIPROTKB|H9L2Z1 [details] [associations]
symbol:H9L2Z1 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007066 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF04983 Pfam:PF04998 Pfam:PF05000
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
Ensembl:ENSGALT00000036064 Uniprot:H9L2Z1
Length = 522
Score = 257 (95.5 bits), Expect = 2.2e-21, P = 2.2e-21
Identities = 59/149 (39%), Positives = 83/149 (55%)
Query: 1 MLALKQTFENQVNRILNDARDKTGG-SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACV 59
M+ LK F+ +VN N+ +S E NNL+ MV +G+KGS +N Q+ +
Sbjct: 244 MVDLK--FKEEVNNYNNEVNKVCMPFGLHRSFPE-NNLQLMVQSGAKGSTVNTVQISCLL 300
Query: 60 GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLI 119
GQ +EG+R P ++LP F D+ P S GFV +L G+ PSEFFFH M GREGL+
Sbjct: 301 GQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLV 360
Query: 120 DTAVKTAETACNAKCAPGEMVGALAAQSL 148
DTAVKT+ + +C + G + L
Sbjct: 361 DTAVKTSRSGYLQRCIIKHLEGLVVQYDL 389
>UNIPROTKB|H9L2Z2 [details] [associations]
symbol:H9L2Z2 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008811 "chloramphenicol O-acetyltransferase activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR001707 InterPro:IPR007066
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF04983 Pfam:PF04998 Pfam:PF05000 ProDom:PD002660
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
GO:GO:0008811 EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
Ensembl:ENSGALT00000036065 Uniprot:H9L2Z2
Length = 527
Score = 257 (95.5 bits), Expect = 2.3e-21, P = 2.3e-21
Identities = 59/149 (39%), Positives = 83/149 (55%)
Query: 1 MLALKQTFENQVNRILNDARDKTGG-SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACV 59
M+ LK F+ +VN N+ +S E NNL+ MV +G+KGS +N Q+ +
Sbjct: 251 MVDLK--FKEEVNNYNNEVNKVCMPFGLHRSFPE-NNLQLMVQSGAKGSTVNTVQISCLL 307
Query: 60 GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLI 119
GQ +EG+R P ++LP F D+ P S GFV +L G+ PSEFFFH M GREGL+
Sbjct: 308 GQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLV 367
Query: 120 DTAVKTAETACNAKCAPGEMVGALAAQSL 148
DTAVKT+ + +C + G + L
Sbjct: 368 DTAVKTSRSGYLQRCIIKHLEGLVVQYDL 396
>UNIPROTKB|H9L2Z3 [details] [associations]
symbol:H9L2Z3 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008811 "chloramphenicol O-acetyltransferase activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR001707 InterPro:IPR007066
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
InterPro:IPR018372 Pfam:PF00302 Pfam:PF04983 Pfam:PF04998
Pfam:PF05000 ProDom:PD002660 PROSITE:PS00100 SMART:SM01059
GO:GO:0005634 Gene3D:3.30.559.10 InterPro:IPR023213 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0003899 PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 GO:GO:0008811 EMBL:AADN02030152
EMBL:AADN02030153 EMBL:AADN02030154 Ensembl:ENSGALT00000036066
OMA:INKRELH Uniprot:H9L2Z3
Length = 533
Score = 256 (95.2 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 57/147 (38%), Positives = 81/147 (55%)
Query: 3 ALKQTFENQVNRILNDARDKTGG-SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 61
A+ F+ +VN N+ +S E NNL+ MV +G+KGS +N Q+ +GQ
Sbjct: 252 AVDLKFKEEVNNYNNEVNKVCMPFGLHRSFPE-NNLQLMVQSGAKGSTVNTVQISCLLGQ 310
Query: 62 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
+EG+R P ++LP F D+ P S GFV +L G+ PSEFFFH M GREGL+DT
Sbjct: 311 IELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLVDT 370
Query: 122 AVKTAETACNAKCAPGEMVGALAAQSL 148
AVKT+ + +C + G + L
Sbjct: 371 AVKTSRSGYLQRCIIKHLEGLVVQYDL 397
>UNIPROTKB|H9L2Z0 [details] [associations]
symbol:H9L2Z0 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007066 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF04983 Pfam:PF04998 Pfam:PF05000
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
Ensembl:ENSGALT00000036063 Uniprot:H9L2Z0
Length = 517
Score = 255 (94.8 bits), Expect = 3.6e-21, P = 3.6e-21
Identities = 58/148 (39%), Positives = 81/148 (54%)
Query: 1 MLALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 60
+ AL T N LN++ +S E NNL+ MV +G+KGS +N Q+ +G
Sbjct: 247 VFALLSTGINCAQYFLNNSLVCMPFGLHRSFPE-NNLQLMVQSGAKGSTVNTVQISCLLG 305
Query: 61 QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
Q +EG+R P ++LP F D+ P S GFV +L G+ PSEFFFH M GREGL+D
Sbjct: 306 QIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLVD 365
Query: 121 TAVKTAETACNAKCAPGEMVGALAAQSL 148
TAVKT+ + +C + G + L
Sbjct: 366 TAVKTSRSGYLQRCIIKHLEGLVVQYDL 393
>UNIPROTKB|E1C4T2 [details] [associations]
symbol:POLR1A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR007081 InterPro:IPR015699 Pfam:PF04998 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:AADN02014782 EMBL:AADN02014783 IPI:IPI00576593
Ensembl:ENSGALT00000025424 ArrayExpress:E1C4T2 Uniprot:E1C4T2
Length = 745
Score = 216 (81.1 bits), Expect = 7.3e-21, Sum P(2) = 7.3e-21
Identities = 49/101 (48%), Positives = 65/101 (64%)
Query: 134 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAPSL 192
C PGE VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K P +
Sbjct: 239 CDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMM 298
Query: 193 TVFLTGQAARDAEKAKNVLCRLEHTTLRKVLYII-LRPATH 232
+V + G + +K K + +L L +VL + L + H
Sbjct: 299 SVPVLG-TKKAHKKVKQLKKQLTRVCLAEVLQKVELEESLH 338
Score = 65 (27.9 bits), Expect = 7.3e-21, Sum P(2) = 7.3e-21
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 112 MGGREGLIDTAVKTAET 128
M GREGL+DTAVKT+ +
Sbjct: 1 MAGREGLVDTAVKTSRS 17
Score = 42 (19.8 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 11/62 (17%), Positives = 28/62 (45%)
Query: 3 ALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 62
++ +TFE+ V +N K+ G + + LK ++ + S + + + + Q
Sbjct: 192 SVSETFESGVEDYINKRECKSRGGCMQPALSSDRLKDLLYLKWQRSLCDPGEAVGLLAAQ 251
Query: 63 NV 64
++
Sbjct: 252 SI 253
>SGD|S000005868 [details] [associations]
symbol:RPA190 "RNA polymerase I largest subunit A190"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IMP;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IGI;IMP] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 SGD:S000005868 EMBL:BK006948 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:X95720 GO:GO:0005736 GO:GO:0003899 GO:GO:0042790
eggNOG:COG0086 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
HOGENOM:HOG000205401 GeneTree:ENSGT00550000074861 OrthoDB:EOG432464
EMBL:J03530 EMBL:Z75249 PIR:S67250 RefSeq:NP_014986.3
RefSeq:NP_620389.3 ProteinModelPortal:P10964 SMR:P10964
DIP:DIP-999N IntAct:P10964 MINT:MINT-613626 STRING:P10964
PaxDb:P10964 PeptideAtlas:P10964 EnsemblFungi:YOR341W GeneID:854519
GeneID:854523 KEGG:sce:YOR341W KEGG:sce:YOR343W-B CYGD:YOR341w
NextBio:976888 Genevestigator:P10964 GermOnline:YOR341W
Uniprot:P10964
Length = 1664
Score = 256 (95.2 bits), Expect = 2.2e-20, P = 2.2e-20
Identities = 55/157 (35%), Positives = 90/157 (57%)
Query: 10 NQVNRILNDARDKT--GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGK 67
++VN I + K G+ KK N+++AM ++G+KGSN+N+SQ++ +GQQ +EG+
Sbjct: 898 SKVNAITSQVVSKCVPDGTMKKF--PCNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGR 955
Query: 68 RIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAE 127
R+P +TLP F + + G+V+ + +G+ P E++FH M GREGLIDTAVKT+
Sbjct: 956 RVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSR 1015
Query: 128 TACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAG 164
+ +C ++ G + TL F + G
Sbjct: 1016 SGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMYGG 1052
Score = 191 (72.3 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 37/60 (61%), Positives = 47/60 (78%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTV 194
PGE VG +A+QS+GEP+TQMTLNTFHFAG + NVTLG+PRL+EI+ S K P +T+
Sbjct: 1181 PGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTL 1240
Score = 38 (18.4 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 71 FGFRKRTLPHFIKDDYGPE 89
+G K + H + + YGPE
Sbjct: 786 YGASKYGIVHSLHEVYGPE 804
>RGD|1305574 [details] [associations]
symbol:Polr3a "polymerase (RNA) III (DNA directed) polypeptide
A" species:10116 "Rattus norvegicus" [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=ISO] [GO:0045087 "innate immune response" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR007081
InterPro:IPR015700 Pfam:PF04998 RGD:1305574 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0086 GO:GO:0032549 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
PANTHER:PTHR19376:SF15 IPI:IPI00766228 EMBL:BC086344
UniGene:Rn.41904 ProteinModelPortal:Q5RK26 STRING:Q5RK26
UCSC:RGD:1305574 Genevestigator:Q5RK26 Uniprot:Q5RK26
Length = 491
Score = 235 (87.8 bits), Expect = 4.8e-19, P = 4.8e-19
Identities = 59/121 (48%), Positives = 75/121 (61%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A+ PG VGAL AQS+GEP TQMTL TFHFAGV+S N+TLGVPR+KEIIN SK P
Sbjct: 126 AQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPI 185
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVL-YI--ILRPATHYQVELISGARRVASLR 248
+T L DA+ A+ V R+E T L ++ YI + P + + +S R+ LR
Sbjct: 186 ITAQL--DMDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLS-LERIRLLR 242
Query: 249 L 249
L
Sbjct: 243 L 243
>TIGR_CMR|CHY_2317 [details] [associations]
symbol:CHY_2317 "DNA-directed RNA polymerase, beta'
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 InterPro:IPR012756
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 KO:K03046 TIGRFAMs:TIGR02388 OMA:DINDKHI
ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 HOGENOM:HOG000218387
RefSeq:YP_361126.1 ProteinModelPortal:Q3A9Q8 SMR:Q3A9Q8
STRING:Q3A9Q8 PRIDE:Q3A9Q8 GeneID:3727667 KEGG:chy:CHY_2317
PATRIC:21277703 BioCyc:CHYD246194:GJCN-2316-MONOMER Uniprot:Q3A9Q8
Length = 1152
Score = 162 (62.1 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 35/95 (36%), Positives = 58/95 (61%)
Query: 129 ACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPK 188
A N+ GE VG +AAQS+GEP TQ+T+ TFH GV+ +++T G+PR++E+ +++PK
Sbjct: 869 ATNSIVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQGLPRVEELFE-ARRPK 927
Query: 189 APSLTVFLTGQA-ARDAEKAKNVLCRLEHTTLRKV 222
++ + G RD + + + + T RKV
Sbjct: 928 GQAIITEIDGVVEVRDNKGRREIEVINQETGERKV 962
Score = 76 (31.8 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 94 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 128
++ ++ GLT E+F G R+GL DTA++TA++
Sbjct: 724 IKANFREGLTVLEYFISTHGARKGLADTALRTADS 758
Score = 42 (19.8 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 15 ILNDARDKTGGSAKKSL--TEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 64
I N A +K ++L +++N++ M +G++G NI Q+ G + +
Sbjct: 663 IWNAATEKVTKKLVETLEASQFNHVYMMAKSGARG---NIQQIRQLAGMRGL 711
>TIGR_CMR|BA_0103 [details] [associations]
symbol:BA_0103 "DNA-directed RNA polymerase, beta' subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 EMBL:X89230 RefSeq:NP_842671.2
RefSeq:YP_016708.1 RefSeq:YP_026389.1 ProteinModelPortal:P77819
IntAct:P77819 DNASU:1086436 EnsemblBacteria:EBBACT00000011911
EnsemblBacteria:EBBACT00000018208 EnsemblBacteria:EBBACT00000020960
GeneID:1086436 GeneID:2818165 GeneID:2851002 KEGG:ban:BA_0103
KEGG:bar:GBAA_0103 KEGG:bat:BAS0103 HOGENOM:HOG000218387
BioCyc:BANT260799:GJAJ-114-MONOMER
BioCyc:BANT261594:GJ7F-116-MONOMER Uniprot:P77819
Length = 1203
Score = 153 (58.9 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFL 196
GE VG +AAQS+GEP TQ+T+ TFH GV+ ++T G+PR++EI ++ PK ++ +
Sbjct: 916 GEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIFE-ARNPKGQAVISEI 974
Query: 197 TG--QAARDAEKAKNVLCRLE 215
G A D + + V+ + E
Sbjct: 975 DGVIAAINDVKDRQEVVVQGE 995
Score = 85 (35.0 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 94 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 128
+++S+ GLT E+F G R+GL DTA+KTA++
Sbjct: 763 IKSSFREGLTVLEYFISTHGARKGLADTALKTADS 797
Score = 63 (27.2 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 7 TFENQVNRILN---DARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG-QQ 62
T E + +R+++ +A+D G KSL + N + M +G++G+ N +Q+ G
Sbjct: 693 TEEERYDRVISIWSNAKDVIQGKLMKSLNKRNPIFMMSDSGARGNASNFTQLAGMRGLMA 752
Query: 63 NVEGK--RIPF--GFRK--RTLPHFI 82
N G+ +P FR+ L +FI
Sbjct: 753 NPSGRIIELPIKSSFREGLTVLEYFI 778
>UNIPROTKB|P37871 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0046677
GO:GO:0006351 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
EMBL:D64127 EMBL:L24376 KO:K03046 ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 HOGENOM:HOG000218387 EMBL:L43593 PIR:G69698
RefSeq:NP_387989.2 ProteinModelPortal:P37871 SMR:P37871
DIP:DIP-49022N IntAct:P37871 PRIDE:P37871
EnsemblBacteria:EBBACT00000003012 GeneID:935977 KEGG:bsu:BSU01080
PATRIC:18971725 GenoList:BSU01080 BioCyc:BSUB:BSU01080-MONOMER
Uniprot:P37871
Length = 1199
Score = 148 (57.2 bits), Expect = 9.3e-12, Sum P(2) = 9.3e-12
Identities = 27/62 (43%), Positives = 42/62 (67%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFL 196
GE VG +AAQS+GEP TQ+T+ TFH GV+ ++T G+PR++E+ ++ PK + +
Sbjct: 916 GEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELFE-ARNPKGQATITEI 974
Query: 197 TG 198
G
Sbjct: 975 DG 976
Score = 85 (35.0 bits), Expect = 9.3e-12, Sum P(2) = 9.3e-12
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 94 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 128
+++S+ GLT E+F G R+GL DTA+KTA++
Sbjct: 763 IKSSFREGLTVLEYFISTHGARKGLADTALKTADS 797
Score = 65 (27.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 24/89 (26%), Positives = 44/89 (49%)
Query: 1 MLALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 60
++ ++ +E ++ I + A+D G KSL E N + M +G++G+ N +Q+ G
Sbjct: 691 LITEEERYERVIS-IWSAAKDVIQGKLMKSLDELNPIYMMSDSGARGNASNFTQLAGMRG 749
Query: 61 -QQNVEGK--RIPF--GFRK--RTLPHFI 82
N G+ +P FR+ L +FI
Sbjct: 750 LMANPAGRIIELPIKSSFREGLTVLEYFI 778
>UNIPROTKB|P0A674 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006351 EMBL:BX842574
Gene3D:2.40.40.20 InterPro:IPR009010 DrugBank:DB01045 GO:GO:0003899
eggNOG:COG0086 EMBL:L27989 KO:K03046 HOGENOM:HOG000218386
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G70535
RefSeq:NP_215182.1 RefSeq:NP_335108.1 RefSeq:YP_006514010.1
ProteinModelPortal:P0A674 SMR:P0A674 IntAct:P0A674 PRIDE:P0A674
EnsemblBacteria:EBMYCT00000001410 EnsemblBacteria:EBMYCT00000072799
GeneID:13318555 GeneID:888177 GeneID:925980 KEGG:mtc:MT0696
KEGG:mtu:Rv0668 KEGG:mtv:RVBD_0668 PATRIC:18123251
TubercuList:Rv0668 DrugBank:DB01201 Uniprot:P0A674
Length = 1316
Score = 137 (53.3 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 29/71 (40%), Positives = 47/71 (66%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFL 196
GE VG +AAQS+GEP TQ+T+ TFH GV +++T G+PR++E+ ++ P+ + +
Sbjct: 992 GEAVGIVAAQSIGEPGTQLTMRTFHQGGVG-EDITGGLPRVQELFE-ARVPRGKAPIADV 1049
Query: 197 TGQAA-RDAEK 206
TG+ D E+
Sbjct: 1050 TGRVRLEDGER 1060
Score = 85 (35.0 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 94 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 128
V++S+ GLT E+F + G R+GL DTA++TA++
Sbjct: 836 VKSSFREGLTVLEYFINTHGARKGLADTALRTADS 870
>TIGR_CMR|DET_0604 [details] [associations]
symbol:DET_0604 "DNA-directed RNA polymerase, beta'
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
HOGENOM:HOG000218387 RefSeq:YP_181346.1 ProteinModelPortal:Q3Z8V3
SMR:Q3Z8V3 STRING:Q3Z8V3 PRIDE:Q3Z8V3 GeneID:3230059
KEGG:det:DET0604 PATRIC:21608279 BioCyc:DETH243164:GJNF-605-MONOMER
Uniprot:Q3Z8V3
Length = 1295
Score = 145 (56.1 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 28/61 (45%), Positives = 42/61 (68%)
Query: 140 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQ 199
VG +AAQS+GEP TQ+TL TFH GV ++T G+PR++E+ ++ PK S+ + G+
Sbjct: 941 VGIIAAQSIGEPGTQLTLRTFHTGGVVGVDITTGLPRVEELFE-ARPPKVQSIISEIDGE 999
Query: 200 A 200
A
Sbjct: 1000 A 1000
Score = 73 (30.8 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 94 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 126
+++S GLT E+F G R+GL DTA++T+
Sbjct: 786 IKSSLREGLTTLEYFISTHGARKGLADTALRTS 818
>TIGR_CMR|CJE_0529 [details] [associations]
symbol:CJE_0529 "DNA-directed RNA polymerase, beta'
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:CP000025 GenomeReviews:CP000025_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
RefSeq:YP_178547.1 ProteinModelPortal:Q5HVY8 SMR:Q5HVY8
STRING:Q5HVY8 GeneID:3231290 KEGG:cjr:CJE0529 PATRIC:20042780
OMA:VIAEWDP BioCyc:CJEJ195099:GJC0-544-MONOMER Uniprot:Q5HVY8
Length = 1517
Score = 112 (44.5 bits), Expect = 4.7e-09, Sum P(4) = 4.7e-09
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 136 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNV 170
PGE VG ++AQS+GEP TQ+TL TFH G +S ++
Sbjct: 909 PGEAVGIISAQSIGEPGTQLTLRTFHSGGTASTDL 943
Score = 70 (29.7 bits), Expect = 4.7e-09, Sum P(4) = 4.7e-09
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 96 NSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 126
+++ GL E+F G R+GL DTA+KTA
Sbjct: 759 SNFREGLNVLEYFISTHGARKGLADTALKTA 789
Score = 62 (26.9 bits), Expect = 4.7e-09, Sum P(4) = 4.7e-09
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 163 AGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAARDAE-KAKN-VLCRLEHTTLR 220
A SK++T G+PR+ E+ ++KPK ++ + G D ++K ++ + E T
Sbjct: 1270 AAAKSKDITGGLPRVSELFE-ARKPKNAAVIAEIDGVVRFDKPLRSKERIIIQAEDGTSA 1328
Query: 221 KVLYIILRPATHYQV 235
+ Y+I + + H QV
Sbjct: 1329 E--YLIDK-SKHIQV 1340
Score = 48 (22.0 bits), Expect = 4.7e-09, Sum P(4) = 4.7e-09
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 28 KKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 60
+K +N++ M +G++GS ISQ+ A G
Sbjct: 711 EKDKEGFNSIYMMADSGARGSAAQISQLAAMRG 743
Score = 39 (18.8 bits), Expect = 3.6e-08, Sum P(4) = 3.6e-08
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 35 NNLKAMVVAGSKGSNI-NISQVI-ACVGQ--QNVEGKRIPFGFR 74
N +A V G+ + ++S++I G+ QN+ GKR+ F R
Sbjct: 331 NGRRANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGR 374
Score = 39 (18.8 bits), Expect = 7.4e-05, Sum P(3) = 7.4e-05
Identities = 17/67 (25%), Positives = 31/67 (46%)
Query: 6 QTFENQV-NRIL-NDARDKTGGS---AKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 60
+T E ++ R+L D D S A+ +L + K + +G K ++NI I C
Sbjct: 831 ETLEERILGRVLAEDVIDPITNSVLFAEGTLMDEEKAKILGESGIK--SVNIRTPITCKA 888
Query: 61 QQNVEGK 67
++ + K
Sbjct: 889 KKGICAK 895
>TIGR_CMR|SPO_3507 [details] [associations]
symbol:SPO_3507 "DNA-directed RNA polymerase, beta'
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_168702.1 ProteinModelPortal:Q5LMQ6
SMR:Q5LMQ6 PRIDE:Q5LMQ6 GeneID:3196349 KEGG:sil:SPO3507
PATRIC:23380483 Uniprot:Q5LMQ6
Length = 1413
Score = 107 (42.7 bits), Expect = 2.1e-08, Sum P(4) = 2.1e-08
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVS 166
GE VG +AAQS+GEP TQ+T+ TFH GV+
Sbjct: 909 GEAVGIIAAQSIGEPGTQLTMRTFHIGGVA 938
Score = 72 (30.4 bits), Expect = 2.1e-08, Sum P(4) = 2.1e-08
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 96 NSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 128
+++ GLT E+F G R+GL DTA+KTA +
Sbjct: 758 SNFKEGLTVLEYFNSTHGARKGLSDTALKTANS 790
Score = 63 (27.2 bits), Expect = 2.1e-08, Sum P(4) = 2.1e-08
Identities = 16/75 (21%), Positives = 37/75 (49%)
Query: 164 GVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQA--ARDAEKAKNVLCRLEHTTLRK 221
G +K++T G+PR+ E+ +++PK ++ + G RD + + + + +
Sbjct: 1122 GAKTKDITGGLPRVAELFE-ARRPKDHAIIAEIDGYVRFGRDYKNKRRISIEPSNEAMEP 1180
Query: 222 VLYIILRPATHYQVE 236
V Y++ + H V+
Sbjct: 1181 VEYMVPK-GKHIPVQ 1194
Score = 43 (20.2 bits), Expect = 2.1e-08, Sum P(4) = 2.1e-08
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 9 ENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQV 55
E ++ I D RD+ G ++ E N++ M +G++GS + Q+
Sbjct: 696 EAMMSTISADKRDENG-----AVMEPNSVYMMAHSGARGSVTQMKQL 737
Score = 36 (17.7 bits), Expect = 1.0e-07, Sum P(4) = 1.0e-07
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 61 QQNVEGKRIPFGFR 74
+QN+ GKR+ F R
Sbjct: 342 RQNLLGKRVDFSGR 355
>TIGR_CMR|CPS_4768 [details] [associations]
symbol:CPS_4768 "DNA-directed RNA polymerase, beta'
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_271412.1 ProteinModelPortal:Q47UW0
SMR:Q47UW0 STRING:Q47UW0 PRIDE:Q47UW0 GeneID:3519900
KEGG:cps:CPS_4768 PATRIC:21472353
BioCyc:CPSY167879:GI48-4774-MONOMER Uniprot:Q47UW0
Length = 1406
Score = 108 (43.1 bits), Expect = 6.2e-08, Sum P(4) = 6.2e-08
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSK 168
GE +G +AAQS+GEP TQ+T+ TFH G +S+
Sbjct: 912 GEAIGVVAAQSIGEPGTQLTMRTFHIGGAASR 943
Score = 74 (31.1 bits), Expect = 6.2e-08, Sum P(4) = 6.2e-08
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 94 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 128
++ ++ GLT ++F G R+GL DTA+KTA +
Sbjct: 759 IKANFREGLTVLQYFISTHGARKGLADTALKTANS 793
Score = 61 (26.5 bits), Expect = 6.2e-08, Sum P(4) = 6.2e-08
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 163 AGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAARDAE-KAK 208
A ++++T G+PR+ ++ ++KPK P++ TG A E K K
Sbjct: 1127 ASSKTRDITGGLPRVADLFE-ARKPKLPAILAEKTGVVAFGKETKGK 1172
Score = 37 (18.1 bits), Expect = 6.2e-08, Sum P(4) = 6.2e-08
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 34 YNNLKAMVVAGSKGSNINISQVIACVG 60
+N++ M +G++GS I Q+ G
Sbjct: 719 FNSIFMMADSGARGSAAQIRQLAGMRG 745
>UNIPROTKB|P0A8T7 [details] [associations]
symbol:rpoC "RNA polymerase, beta' subunit" species:83333
"Escherichia coli K-12" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IDA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005737 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351 EMBL:U00006
Gene3D:2.40.40.20 InterPro:IPR009010 PDB:3IYD PDBsum:3IYD
GO:GO:0003899 EMBL:V00339 eggNOG:COG0086 PDB:3LU0 PDBsum:3LU0
EMBL:V00340 EMBL:M38293 EMBL:M38303 KO:K03046 HOGENOM:HOG000218386
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 EMBL:M38305
EMBL:M38288 PIR:A00695 RefSeq:NP_418415.1 RefSeq:YP_491473.1
PDB:2AUK PDB:2LMC PDBsum:2AUK PDBsum:2LMC ProteinModelPortal:P0A8T7
SMR:P0A8T7 DIP:DIP-35803N IntAct:P0A8T7 MINT:MINT-1220667
PhosSite:P010445 PaxDb:P0A8T7 PRIDE:P0A8T7
EnsemblBacteria:EBESCT00000001546 EnsemblBacteria:EBESCT00000001547
EnsemblBacteria:EBESCT00000001548 EnsemblBacteria:EBESCT00000018189
GeneID:12933965 GeneID:948487 KEGG:ecj:Y75_p3209 KEGG:eco:b3988
PATRIC:32123497 EchoBASE:EB0888 EcoGene:EG10895
BioCyc:EcoCyc:RPOC-MONOMER BioCyc:ECOL316407:JW3951-MONOMER
BioCyc:MetaCyc:RPOC-MONOMER EvolutionaryTrace:P0A8T7
Genevestigator:P0A8T7 Uniprot:P0A8T7
Length = 1407
Score = 109 (43.4 bits), Expect = 9.5e-08, Sum P(4) = 9.5e-08
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSK 168
GE +G +AAQS+GEP TQ+T+ TFH G +S+
Sbjct: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943
Score = 67 (28.6 bits), Expect = 9.5e-08, Sum P(4) = 9.5e-08
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 97 SYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 128
++ GL ++F G R+GL DTA+KTA +
Sbjct: 762 NFREGLNVLQYFISTHGARKGLADTALKTANS 793
Score = 56 (24.8 bits), Expect = 9.5e-08, Sum P(4) = 9.5e-08
Identities = 9/32 (28%), Positives = 23/32 (71%)
Query: 167 SKNVTLGVPRLKEIINISKKPKAPSLTVFLTG 198
+K++T G+PR+ ++ +++PK P++ ++G
Sbjct: 1131 TKDITGGLPRVADLFE-ARRPKEPAILAEISG 1161
Score = 46 (21.3 bits), Expect = 9.5e-08, Sum P(4) = 9.5e-08
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 5 KQTFEN-QVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 60
K +N Q ++N RD G +K ++ +N++ M +G++GS I Q+ G
Sbjct: 695 KAMMDNLQTETVIN--RD---GQEEKQVS-FNSIYMMADSGARGSAAQIRQLAGMRG 745
>TIGR_CMR|NSE_0677 [details] [associations]
symbol:NSE_0677 "DNA-directed RNA polymerase, beta'
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 TIGRFAMs:TIGR02386 OMA:VIAEWDP
RefSeq:YP_506555.1 ProteinModelPortal:Q2GD91 SMR:Q2GD91
STRING:Q2GD91 PRIDE:Q2GD91 GeneID:3931848 KEGG:nse:NSE_0677
PATRIC:22681373 BioCyc:NSEN222891:GHFU-691-MONOMER Uniprot:Q2GD91
Length = 1375
Score = 110 (43.8 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 135 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNV 170
A GE VG +AAQS+GEP TQ+T+ TFH G +++ V
Sbjct: 893 ALGEAVGVIAAQSVGEPGTQLTMRTFHVGGAATRRV 928
Score = 60 (26.2 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 106 EFFFHAMGGREGLIDTAVKTAET 128
E+F G R+GL DTA+KTA +
Sbjct: 754 EYFNSTHGARKGLADTALKTANS 776
Score = 57 (25.1 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 19 ARDKTGG-SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG-QQNVEGKRIP 70
A+D G S +S+ E N++ M +G++GS I Q+ G G+ IP
Sbjct: 686 AKDMMDGISGYESVAEMNSIFMMAQSGARGSAAQIKQLAGMRGLMAKPSGEIIP 739
Score = 49 (22.3 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 16/64 (25%), Positives = 35/64 (54%)
Query: 166 SSKNVTLGVPRLKEIINISKKPKAPSLTVFLTG--QAARDAEKAKN-VLCRLEHTTLRKV 222
+++++T G+PR+ E+ ++K K ++ + G + A+D K+K V+ R R
Sbjct: 1111 TTRDITGGLPRVIELFE-ARKAKVNAVISEIDGYVEFAKDYYKSKRKVIVRSREDKERIY 1169
Query: 223 LYII 226
Y++
Sbjct: 1170 EYLV 1173
Score = 42 (19.8 bits), Expect = 3.6e-06, Sum P(4) = 3.6e-06
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 13 NRILNDARDKTGGSAKKSLTEYNNLKAMVVAGS-KGSNINISQVI-ACVGQ--QNVEGKR 68
N I+N+ R + A +L + N +A V+ GS K +IS ++ G+ QN+ GKR
Sbjct: 290 NIIINNER-RMLQEAVDALFD-NGRRAKVIKGSNKRPYKSISDMLKGKQGRFRQNLLGKR 347
Query: 69 IPFGFR 74
+ + R
Sbjct: 348 VDYSGR 353
>UNIPROTKB|Q9KV29 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
PIR:G82336 RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
PATRIC:20079715 Uniprot:Q9KV29
Length = 1401
Score = 108 (43.1 bits), Expect = 3.7e-07, Sum P(4) = 3.7e-07
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSS 167
GE VG +AAQS+GEP TQ+T+ TFH G +S
Sbjct: 912 GEAVGVIAAQSIGEPGTQLTMRTFHIGGAAS 942
Score = 67 (28.6 bits), Expect = 3.7e-07, Sum P(4) = 3.7e-07
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 97 SYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 128
++ GL ++F G R+GL DTA+KTA +
Sbjct: 762 NFKEGLNVLQYFISTHGARKGLADTALKTANS 793
Score = 58 (25.5 bits), Expect = 3.7e-07, Sum P(4) = 3.7e-07
Identities = 22/77 (28%), Positives = 38/77 (49%)
Query: 167 SKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAARDAE-KAKNVLCRLEHTTLRKVLYI 225
+K++T G+PR+ ++ ++KPK P++ +G + E K K RL T Y
Sbjct: 1131 NKDITGGLPRVADLFE-ARKPKEPAILAEHSGTVSFGKETKGKR---RLIITRDSGDTYE 1186
Query: 226 ILRPATHYQVELISGAR 242
+ P H Q+ + G R
Sbjct: 1187 EMIPK-HRQLNVFEGER 1202
Score = 39 (18.8 bits), Expect = 3.7e-07, Sum P(4) = 3.7e-07
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 25 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 60
G +K +N++ M +G++GS I Q+ G
Sbjct: 711 GEQEKQ-ESFNSIYMMADSGARGSAAQIRQLAGMRG 745
>TIGR_CMR|VC_0329 [details] [associations]
symbol:VC_0329 "DNA-directed RNA polymerase, beta' subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G82336
RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
PATRIC:20079715 Uniprot:Q9KV29
Length = 1401
Score = 108 (43.1 bits), Expect = 3.7e-07, Sum P(4) = 3.7e-07
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSS 167
GE VG +AAQS+GEP TQ+T+ TFH G +S
Sbjct: 912 GEAVGVIAAQSIGEPGTQLTMRTFHIGGAAS 942
Score = 67 (28.6 bits), Expect = 3.7e-07, Sum P(4) = 3.7e-07
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 97 SYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 128
++ GL ++F G R+GL DTA+KTA +
Sbjct: 762 NFKEGLNVLQYFISTHGARKGLADTALKTANS 793
Score = 58 (25.5 bits), Expect = 3.7e-07, Sum P(4) = 3.7e-07
Identities = 22/77 (28%), Positives = 38/77 (49%)
Query: 167 SKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAARDAE-KAKNVLCRLEHTTLRKVLYI 225
+K++T G+PR+ ++ ++KPK P++ +G + E K K RL T Y
Sbjct: 1131 NKDITGGLPRVADLFE-ARKPKEPAILAEHSGTVSFGKETKGKR---RLIITRDSGDTYE 1186
Query: 226 ILRPATHYQVELISGAR 242
+ P H Q+ + G R
Sbjct: 1187 EMIPK-HRQLNVFEGER 1202
Score = 39 (18.8 bits), Expect = 3.7e-07, Sum P(4) = 3.7e-07
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 25 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 60
G +K +N++ M +G++GS I Q+ G
Sbjct: 711 GEQEKQ-ESFNSIYMMADSGARGSAAQIRQLAGMRG 745
>TIGR_CMR|SO_0225 [details] [associations]
symbol:SO_0225 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:NP_715865.1 ProteinModelPortal:Q8EK73
SMR:Q8EK73 PRIDE:Q8EK73 GeneID:1168108 KEGG:son:SO_0225
PATRIC:23520143 Uniprot:Q8EK73
Length = 1405
Score = 108 (43.1 bits), Expect = 3.7e-07, Sum P(4) = 3.7e-07
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSK 168
GE +G +AAQS+GEP TQ+T+ TFH G +S+
Sbjct: 912 GEAIGVVAAQSIGEPGTQLTMRTFHIGGAASR 943
Score = 67 (28.6 bits), Expect = 3.7e-07, Sum P(4) = 3.7e-07
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 97 SYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 128
++ GL ++F G R+GL DTA+KTA +
Sbjct: 762 NFREGLNVLQYFISTHGARKGLADTALKTANS 793
Score = 57 (25.1 bits), Expect = 3.7e-07, Sum P(4) = 3.7e-07
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 167 SKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAARDAE-KAKNVL 211
++++T G+PR+ ++ ++KPK P++ ++G + E K K L
Sbjct: 1131 TRDITGGLPRVADLFE-ARKPKEPAILAEISGTISFGKETKGKRRL 1175
Score = 40 (19.1 bits), Expect = 3.7e-07, Sum P(4) = 3.7e-07
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 5 KQTFEN-QVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 60
K EN ++N RD G +K + +N++ M +G++GS I Q+ G
Sbjct: 695 KAMMENLSTETVIN--RD---GVEEKQAS-FNSIYMMADSGARGSAAQIRQLAGMRG 745
>TIGR_CMR|ECH_0951 [details] [associations]
symbol:ECH_0951 "DNA-directed RNA polymerase, beta'
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_507739.1 ProteinModelPortal:Q2GFP4
STRING:Q2GFP4 PRIDE:Q2GFP4 GeneID:3927754 KEGG:ech:ECH_0951
PATRIC:20577284 BioCyc:ECHA205920:GJNR-954-MONOMER Uniprot:Q2GFP4
Length = 1410
Score = 107 (42.7 bits), Expect = 6.2e-07, Sum P(4) = 6.2e-07
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNV 170
GE VG +AAQS+GEP TQ+T+ TFH G + + V
Sbjct: 908 GEAVGVIAAQSVGEPGTQLTMRTFHVGGTAMRGV 941
Score = 68 (29.0 bits), Expect = 6.2e-07, Sum P(4) = 6.2e-07
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 96 NSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 128
+++ GL E+F G R+GL DTA+KTA +
Sbjct: 757 SNFREGLNVFEYFNSTHGARKGLADTALKTANS 789
Score = 54 (24.1 bits), Expect = 6.2e-07, Sum P(4) = 6.2e-07
Identities = 14/65 (21%), Positives = 36/65 (55%)
Query: 165 VSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTG--QAARDAEKAKN-VLCRLEHTTLRK 221
+ ++++T G+PR+ E+ +++PK ++ + G + +D ++K + + TL
Sbjct: 1123 IKTRDITGGLPRVIELFE-ARRPKEHAIVSDIDGYVEFGKDYYRSKRRIFIKPVSDTLSP 1181
Query: 222 VLYII 226
V Y++
Sbjct: 1182 VEYLV 1186
Score = 41 (19.5 bits), Expect = 6.2e-07, Sum P(4) = 6.2e-07
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 14 RILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVI-ACVGQ--QNVEGKRIP 70
R+L +A D S ++S Y + KA GS G ++S ++ G+ QN+ GKR+
Sbjct: 297 RMLQEAVDALFDSTRRS---YVSNKA----GSVGYKKSLSDMLKGKQGRFRQNLLGKRVD 349
Query: 71 FGFR 74
+ R
Sbjct: 350 YSGR 353
>TIGR_CMR|APH_1023 [details] [associations]
symbol:APH_1023 "DNA-directed RNA polymerase, beta'
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 RefSeq:YP_505582.1 ProteinModelPortal:Q2GJ69
STRING:Q2GJ69 PRIDE:Q2GJ69 GeneID:3930013 KEGG:aph:APH_1023
PATRIC:20950796 HOGENOM:HOG000218386 OMA:DINDKHI
ProtClustDB:PRK00566 BioCyc:APHA212042:GHPM-1030-MONOMER
TIGRFAMs:TIGR02386 Uniprot:Q2GJ69
Length = 1409
Score = 107 (42.7 bits), Expect = 7.7e-07, Sum P(4) = 7.7e-07
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNV 170
GE VG +AAQS+GEP TQ+T+ TFH G + + V
Sbjct: 903 GEAVGVIAAQSVGEPGTQLTMRTFHVGGTAMRGV 936
Score = 69 (29.3 bits), Expect = 7.7e-07, Sum P(4) = 7.7e-07
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 96 NSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 128
+++ GL+ E+F G R+GL DTA+KTA +
Sbjct: 752 SNFREGLSVFEYFNSTHGARKGLADTALKTANS 784
Score = 53 (23.7 bits), Expect = 7.7e-07, Sum P(4) = 7.7e-07
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 165 VSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTG--QAARDAEKAKN-VLCRLEHTTLRK 221
+ ++++T G+PR+ E+ ++KPK ++ + G + +D ++K + R +L
Sbjct: 1118 IKTRDITGGLPRVIELFE-ARKPKEHAIVSDVDGYVEFGKDYYRSKRRIFIRPVDKSLPV 1176
Query: 222 VLYII 226
V Y++
Sbjct: 1177 VEYLV 1181
Score = 40 (19.1 bits), Expect = 7.7e-07, Sum P(4) = 7.7e-07
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 33 EYNNLKAMVVAGSKGSNINISQVIACVG 60
+YN++ M +G++GS + Q+ G
Sbjct: 709 KYNSIYMMANSGARGSASQMKQLAGMRG 736
Score = 37 (18.1 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 18/64 (28%), Positives = 33/64 (51%)
Query: 14 RILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVI-ACVGQ--QNVEGKRIP 70
R+L +A D S+++S Y + + GS G ++S ++ G+ QN+ GKR+
Sbjct: 297 RMLQEAVDALFDSSRRS---YVSSRV----GSMGYKKSLSDMLKGKQGRFRQNLLGKRVD 349
Query: 71 FGFR 74
+ R
Sbjct: 350 YSGR 353
>UNIPROTKB|F1LQN7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF05000 SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 PANTHER:PTHR19376:SF11 IPI:IPI00389616
Ensembl:ENSRNOT00000013417 ArrayExpress:F1LQN7 Uniprot:F1LQN7
Length = 1011
Score = 139 (54.0 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 33/104 (31%), Positives = 53/104 (50%)
Query: 1 MLALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 60
M+ +K F+ +VN N+ NNL+ MV +G+KGS +N Q+ +G
Sbjct: 888 MIDMK--FKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLG 945
Query: 61 QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 104
Q +EG+R P ++LP F ++ P + GFV +L G+ P
Sbjct: 946 QIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRP 989
>TIGR_CMR|CBU_0232 [details] [associations]
symbol:CBU_0232 "DNA-directed RNA polymerase beta'
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:NP_819276.1 ProteinModelPortal:Q83ET0
SMR:Q83ET0 PRIDE:Q83ET0 GeneID:1208113 KEGG:cbu:CBU_0232
PATRIC:17929155 BioCyc:CBUR227377:GJ7S-238-MONOMER Uniprot:Q83ET0
Length = 1414
Score = 108 (43.1 bits), Expect = 7.0e-06, Sum P(3) = 7.0e-06
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSK 168
GE +G +AAQS+GEP TQ+T+ TFH G +S+
Sbjct: 912 GEAIGVVAAQSIGEPGTQLTMRTFHIGGAASR 943
Score = 67 (28.6 bits), Expect = 7.0e-06, Sum P(3) = 7.0e-06
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 97 SYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 128
++ GL ++F G R+GL DTA+KTA +
Sbjct: 762 NFREGLNVLQYFISTHGARKGLADTALKTANS 793
Score = 48 (22.0 bits), Expect = 7.0e-06, Sum P(3) = 7.0e-06
Identities = 11/60 (18%), Positives = 36/60 (60%)
Query: 167 SKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAA--RDA-EKAKNVLCRLEHTTLRKVL 223
++++T G+PR+ ++ +++PK ++ ++G + +D +K + ++ + TT +++
Sbjct: 1131 TRDITGGLPRVADLFE-ARRPKDAAILAEISGVVSFGKDTKDKGRLIITAPDGTTHEELI 1189
>UNIPROTKB|P0C507 [details] [associations]
symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:AY522331
GO:GO:0003899 TIGRFAMs:TIGR02388 ProteinModelPortal:P0C507
Gramene:P0C507 HOGENOM:HOG000154184 Genevestigator:P0C507
Uniprot:P0C507
Length = 1513
Score = 103 (41.3 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGV 165
GE VG +A QS+GEP TQ+TL TFH GV
Sbjct: 320 GEAVGVIAGQSIGEPGTQLTLRTFHTGGV 348
Score = 72 (30.4 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 94 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAE 127
++++ GL+ +E+ G R+G++DTAV+TA+
Sbjct: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTAD 198
Score = 37 (18.1 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 201 ARDAEKAKN-VLCRLEHTTLRKVLYIIL-RPATHYQVELISGARRVASL 247
+++++K +N V + + K Y +L RPA Y E+ G R +A+L
Sbjct: 879 SKESKKRENWVYVQWKKILKSKEKYFVLVRPAVAY--EMNEG-RNLATL 924
>UNIPROTKB|P0C508 [details] [associations]
symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:AY522329
GO:GO:0003899 ProtClustDB:CHL00117 TIGRFAMs:TIGR02388
RefSeq:YP_654208.1 ProteinModelPortal:P0C508 GeneID:4126924
Gramene:P0C508 Uniprot:P0C508
Length = 1513
Score = 103 (41.3 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGV 165
GE VG +A QS+GEP TQ+TL TFH GV
Sbjct: 320 GEAVGVIAGQSIGEPGTQLTLRTFHTGGV 348
Score = 72 (30.4 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 94 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAE 127
++++ GL+ +E+ G R+G++DTAV+TA+
Sbjct: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTAD 198
Score = 37 (18.1 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 201 ARDAEKAKN-VLCRLEHTTLRKVLYIIL-RPATHYQVELISGARRVASL 247
+++++K +N V + + K Y +L RPA Y E+ G R +A+L
Sbjct: 879 SKESKKRENWVYVQWKKILKSKEKYFVLVRPAVAY--EMNEG-RNLATL 924
>UNIPROTKB|P0C509 [details] [associations]
symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:X15901 EMBL:AY522330
GO:GO:0003899 eggNOG:COG0086 KO:K03046 ProtClustDB:CHL00117
TIGRFAMs:TIGR02388 PIR:JQ0215 RefSeq:NP_039375.1
ProteinModelPortal:P0C509 STRING:P0C509 GeneID:3131434
KEGG:osa:3131434 Gramene:P0C509 Uniprot:P0C509
Length = 1513
Score = 103 (41.3 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGV 165
GE VG +A QS+GEP TQ+TL TFH GV
Sbjct: 320 GEAVGVIAGQSIGEPGTQLTLRTFHTGGV 348
Score = 72 (30.4 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 94 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAE 127
++++ GL+ +E+ G R+G++DTAV+TA+
Sbjct: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTAD 198
Score = 37 (18.1 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 201 ARDAEKAKN-VLCRLEHTTLRKVLYIIL-RPATHYQVELISGARRVASL 247
+++++K +N V + + K Y +L RPA Y E+ G R +A+L
Sbjct: 879 SKESKKRENWVYVQWKKILKSKEKYFVLVRPAVAY--EMNEG-RNLATL 924
>UNIPROTKB|Q6ENI2 [details] [associations]
symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:AP006728
GO:GO:0003899 RefSeq:YP_052741.1 ProteinModelPortal:Q6ENI2
GeneID:2885930 Gramene:Q6ENI2 ProtClustDB:CHL00117
TIGRFAMs:TIGR02388 Uniprot:Q6ENI2
Length = 1513
Score = 103 (41.3 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGV 165
GE VG +A QS+GEP TQ+TL TFH GV
Sbjct: 320 GEAVGVIAGQSIGEPGTQLTLRTFHTGGV 348
Score = 72 (30.4 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 94 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAE 127
++++ GL+ +E+ G R+G++DTAV+TA+
Sbjct: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTAD 198
Score = 37 (18.1 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 201 ARDAEKAKN-VLCRLEHTTLRKVLYIIL-RPATHYQVELISGARRVASL 247
+++++K +N V + + K Y +L RPA Y E+ G R +A+L
Sbjct: 879 SKESKKRENWVYVQWKKILKSKEKYFVLVRPAVAY--EMNEG-RNLATL 924
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 258 258 0.00087 114 3 11 22 0.46 33
32 0.48 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 82
No. of states in DFA: 562 (60 KB)
Total size of DFA: 161 KB (2097 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:04
No. of threads or processors used: 24
Search cpu time: 21.59u 0.10s 21.69t Elapsed: 00:00:27
Total cpu time: 21.61u 0.10s 21.71t Elapsed: 00:00:31
Start: Thu Aug 15 13:27:14 2013 End: Thu Aug 15 13:27:45 2013