RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3022
(258 letters)
>4ayb_A DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_A
2y0s_A 2waq_A 4b1o_A 4b1p_W 2pmz_A 3hkz_A
Length = 880
Score = 259 bits (663), Expect = 6e-81
Identities = 58/125 (46%), Positives = 83/125 (66%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+++ EN + L+ R G A K L +N M G++GS +NI+Q+ A +GQQ+
Sbjct: 692 LEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLGQQS 751
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
V G+RI G+ RTLPHF D PE+RGF+ +S+ GL P+E FFHA GGREGL+DTAV
Sbjct: 752 VRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGREGLVDTAV 811
Query: 124 KTAET 128
+T+++
Sbjct: 812 RTSQS 816
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 230 bits (588), Expect = 2e-69
Identities = 94/125 (75%), Positives = 105/125 (84%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+++FE +V+RILN ARD G SA+ SL + NN+K MV AGSKGS INISQ+ ACVGQQ
Sbjct: 716 LRESFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQI 775
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRIPFGF+ RTLPHF KDD PESRGF+ENSYL GLTP EFFFHAM GREGLIDTAV
Sbjct: 776 VEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAV 835
Query: 124 KTAET 128
KTAET
Sbjct: 836 KTAET 840
Score = 155 bits (392), Expect = 4e-43
Identities = 62/92 (67%), Positives = 74/92 (80%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
A +PGEMVG LAAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K PS
Sbjct: 1059 AVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPS 1118
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVL 223
LT++L A + + AKNV ++EHTTL V
Sbjct: 1119 LTIYLMPWIAANMDLAKNVQTQIEHTTLSTVT 1150
>1twf_A B220, DNA-directed RNA polymerase II largest subunit;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB:
1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A
1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A*
1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 229 bits (584), Expect = 7e-69
Identities = 92/125 (73%), Positives = 106/125 (84%)
Query: 4 LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
L+++FE+ V R LN+ARDK G A+ +L + NN+K MV+AGSKGS INI+Q+ ACVGQQ+
Sbjct: 710 LRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQS 769
Query: 64 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 770 VEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 829
Query: 124 KTAET 128
KTAET
Sbjct: 830 KTAET 834
Score = 149 bits (377), Expect = 4e-41
Identities = 60/92 (65%), Positives = 71/92 (77%)
Query: 132 AKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 191
+ PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PS
Sbjct: 1056 SVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPS 1115
Query: 192 LTVFLTGQAARDAEKAKNVLCRLEHTTLRKVL 223
LTV+L A D E+AK + +EHTTL+ V
Sbjct: 1116 LTVYLEPGHAADQEQAKLIRSAIEHTTLKSVT 1147
>4ayb_C DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_C
4b1o_C 4b1p_Y 2waq_C 2wb1_C 3hkz_C 2pmz_C
Length = 395
Score = 156 bits (396), Expect = 7e-46
Identities = 49/108 (45%), Positives = 65/108 (60%)
Query: 130 CNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKA 189
APGE +G +AAQS+GEP TQMTL TFHFAG+ NVTLG+PRL EI++ K P
Sbjct: 60 SEGLIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPST 119
Query: 190 PSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKVLYIILRPATHYQVEL 237
P +T++LT + D EKA V +LE+T + V+ + L
Sbjct: 120 PMMTIYLTDEYKHDKEKALEVARKLEYTKIENVVSSTSIDIASMSIIL 167
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_D*
Length = 1407
Score = 62.7 bits (153), Expect = 2e-11
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 193
GE +G +AAQS+GEP TQ+T+ TFH G +S+ ++K +I K S+
Sbjct: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSI-KLSNVKSVV 967
Score = 38.4 bits (90), Expect = 0.002
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 101 GLTPSEFFFHAMGGREGLIDTAVKTAE 127
GL ++F G R+GL DTA+KTA
Sbjct: 766 GLNVLQYFISTHGARKGLADTALKTAN 792
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 62.5 bits (152), Expect = 2e-11
Identities = 26/53 (49%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGV-SSKNVTLGVPRLKEIINISKKPK 188
GE VG +AAQS+GEP TQ+T+ TFH GV + ++T G+PR+ E+ ++PK
Sbjct: 1218 GEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVIELFEA-RRPK 1269
Score = 39.8 bits (93), Expect = 7e-04
Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 35/127 (27%)
Query: 10 NQVNRILNDARDKTGGSAKKSLTE---YNNLKAMVVAGSKGSNINISQV------IACVG 60
+Q+ ++ + +K + K+ E +N L M +G++G+ I Q+ +
Sbjct: 990 DQILQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQ--- 1046
Query: 61 QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
G+ +P ++ +S+ GLT E+F + G R+G D
Sbjct: 1047 --KPSGETFE-------VP--VR------------SSFREGLTVLEYFISSHGARKGGAD 1083
Query: 121 TAVKTAE 127
TA++TA+
Sbjct: 1084 TALRTAD 1090
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB:
1i6v_D* 2gho_D
Length = 1265
Score = 62.3 bits (152), Expect = 3e-11
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 137 GEMVGALAAQSLGEPATQMTLNTFHFAGV-SSKNVTLGVPRLKEIINISKKPK 188
GE VG +AA+S+GEP TQ+T+ TFH GV ++T G+PR+ E+ ++PK
Sbjct: 959 GEAVGVVAAESIGEPGTQLTMRTFHTGGVAVGTDITQGLPRVIELFEA-RRPK 1010
Score = 40.7 bits (96), Expect = 4e-04
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 35/127 (27%)
Query: 10 NQVNRILNDARDKTGGSAKKSLTE---YNNLKAMVVAGSKGSNINISQV------IACVG 60
+QV ++ + +K + + E +N L M +G++G+ I Q+ +
Sbjct: 731 DQVIQLWTETTEKVTQAVFNNFEENYPFNPLYVMAQSGARGNPQQIRQLCGMRGLMQ--- 787
Query: 61 QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 120
G+ +P ++ +S+ GLT E+F + G R+G D
Sbjct: 788 --KPSGETFE-------VP--VR------------SSFREGLTVLEYFISSHGARKGGAD 824
Query: 121 TAVKTAE 127
TA++TA+
Sbjct: 825 TALRTAD 831
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 6e-09
Identities = 41/211 (19%), Positives = 65/211 (30%), Gaps = 59/211 (27%)
Query: 1 MLALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGS----KGSNINISQVI 56
ML++ + QV +N + ++ N K +VV+G G N+ + +
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 57 ACVGQ-QNVEGKRIPFGFRK-----RTLP-----HFIKDDYGPESRGFVENSYLAG---- 101
A G Q+ RIPF RK R LP H S L
Sbjct: 398 APSGLDQS----RIPFSERKLKFSNRFLPVASPFH---------S------HLLVPASDL 438
Query: 102 ----LTPSEFFFHAMGGREGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEP-----A 152
L + F+A + + V + + G + + + P
Sbjct: 439 INKDLVKNNVSFNA----KDI-QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 153 TQMTLNTFHF----AGVSSKNVTLGVPRLKE 179
TQ H G +S L R K+
Sbjct: 494 TQFKAT--HILDFGPGGASGLGVL-THRNKD 521
Score = 42.0 bits (98), Expect = 1e-04
Identities = 60/343 (17%), Positives = 99/343 (28%), Gaps = 133/343 (38%)
Query: 2 LALKQTFENQV---NRI------LNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 52
L L + FEN N I L D T K+ + Y + A ++A +
Sbjct: 86 LCLTE-FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY--ITARIMAKRPFDKKSN 142
Query: 53 S-----------QVIACVGQQ-NVEGKRIPFG-FRK--RTLPHFIKD------------- 84
S Q++A G Q N + F R +T + D
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDD---YFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 85 ----DYGPE-SRGF-----VEN-------SYLA------------------------GLT 103
D ++G +EN YL G T
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 104 PSEFFFHAMG--GR-EGLIDTAVKTAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTF 160
P E + G G +GL+ TAV AE + +S + F
Sbjct: 260 PGELRSYLKGATGHSQGLV-TAVAIAE--------------TDSWESFFVSVRKAITVLF 304
Query: 161 HFAGVSSKNVTLGVPR-------LKEIINISKKPKAPSLTVFLTGQAARDAEKAKNVLCR 213
F GV P L++ + ++ +P L++ + + + V
Sbjct: 305 -FIGVRCYEAY---PNTSLPPSILEDSLENNEGVPSPMLSI-------SNLTQEQ-VQDY 352
Query: 214 LEHTTLRKVLYIILRPATHYQVELISGARRV------ASLRLF 250
+ T L ++ L++GA+ + SL
Sbjct: 353 VNKTNSH------LPAGKQVEISLVNGAKNLVVSGPPQSLYGL 389
Score = 37.7 bits (87), Expect = 0.003
Identities = 40/281 (14%), Positives = 80/281 (28%), Gaps = 96/281 (34%)
Query: 1 M-LALKQTFENQVNRILNDARDKTGGSAKKSLTE--YNNLKAMVV--AGSKGSNINISQV 55
M + L +T + + N A + + S+ + NN + + G KG I
Sbjct: 1631 MGMDLYKTSK-AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR-ENY 1688
Query: 56 IACVGQQNVEGKRIPFGFRKRTLPHFIKDDY-GPE------------------------- 89
A + + V+GK K H + +
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK 1748
Query: 90 SRGFV-ENSYLAGLTPSEFFFH---------AMGG-------------REG-LIDTAVKT 125
S+G + ++ AG H ++ R G + AV
Sbjct: 1749 SKGLIPADATFAG--------HSLGEYAALASLADVMSIESLVEVVFYR-GMTMQVAVPR 1799
Query: 126 AETACN----AKCAPGEMVGALAAQSL-----------G---EPATQMTLNTFHFAG--- 164
E + PG + + + ++L G E N ++
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV-----N-YNVENQQY 1853
Query: 165 VSSKNVTLGVPRLKEIINISK--KPKAPSLTVFLTGQAARD 203
V++ ++ + + ++N K K L L+ +
Sbjct: 1854 VAAGDLR-ALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 36.6 bits (84), Expect = 0.007
Identities = 45/238 (18%), Positives = 72/238 (30%), Gaps = 85/238 (35%)
Query: 70 PFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETA 129
P TL H G +E+ L P+ FF A +E + E
Sbjct: 8 PL-----TLSH-----------GSLEHVLL---VPTASFFIASQLQEQFNKILPEPTEGF 48
Query: 130 C--NAKCAPGEMVGALAAQSLG------EPATQ--------MTLNTF----------H-F 162
+ P E L + LG EP+ + L F H
Sbjct: 49 AADDEPTTPAE----LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 163 AGVSSKNVTLGVPRLKEII-------NISKKP--KAPSLTVFLTGQAARDAEKAK----- 208
A + + + KE+I ++K+P K + +F +A + A+
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF---RAVGE-GNAQLVAIF 160
Query: 209 ----NVLCRLEHTTLRKVLYIILRPATHYQV---ELI-SGARRVASLRLFGQEPPFLY 258
N E LR LY Y V +LI A ++ L + ++
Sbjct: 161 GGQGNTDDYFEE--LRD-LY------QTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Score = 32.3 bits (73), Expect = 0.17
Identities = 33/175 (18%), Positives = 55/175 (31%), Gaps = 57/175 (32%)
Query: 50 INISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFF 109
+I ++ N I FG K I+++Y + + + G +E F
Sbjct: 1659 FSILDIV----INNPVNLTIHFGGEK---GKRIRENYSA----MIFETIVDGKLKTEKIF 1707
Query: 110 HAMG---------GREGLID-T-----AVKTAETACNA--KCAPGEMVG--ALAAQSLGE 150
+ +GL+ T A+ E A K + G + A SLGE
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK-SKGLIPADATFAGHSLGE 1766
Query: 151 -PATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGQAARDA 204
A L A V S ++ ++ + VF G + A
Sbjct: 1767 YAA----L--ASLADVMS---------IESLVEV----------VFYRGMTMQVA 1796
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 2e-05
Identities = 44/274 (16%), Positives = 85/274 (31%), Gaps = 56/274 (20%)
Query: 1 MLALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 60
L KQ E V + + + Y L + + + ++ I
Sbjct: 70 TLLSKQ--EEMVQKFVEEVLRI----------NYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 61 QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF-FFHAMGGREG-- 117
+ + + R L ++K + + L L P++ + G G
Sbjct: 118 RLYNDNQVFAKYNVSR-LQPYLK----------LRQA-LLELRPAKNVLIDGVLG-SGKT 164
Query: 118 -LIDTAVKTAETACN----------AKC-APGEMVGALAAQSLGEPATQMTLNTFHFAGV 165
+ + + C C +P ++ L Q L Q+ N +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML--QKL---LYQIDPN-WTSRSD 218
Query: 166 SSKNVTLGVPRLKEIIN--ISKKPKAPSLTVFLTGQAARDAE--KAKNVLCRLEHTTLRK 221
S N+ L + ++ + + KP L V L ++A+ A N+ C++ TT K
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLN--VQNAKAWNAFNLSCKILLTTRFK 275
Query: 222 VLYIILRPATHYQVELI---SGARRVASLRLFGQ 252
+ L AT + L L +
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Score = 43.7 bits (102), Expect = 4e-05
Identities = 42/281 (14%), Positives = 85/281 (30%), Gaps = 69/281 (24%)
Query: 6 QTFENQVNRILNDA---------RDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVI 56
+ + Q +R+ ND R + +++L E K +++ G GS +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG---KTWV 166
Query: 57 AC-VGQQNVEGKRIPFG-----FRKR-----------TLPHFIKDDYGPESRGFVENSYL 99
A V ++ F + L + I ++ S
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 100 AGLTPSEF--FFHAMGGREGLI---DTAVKTAET--ACNAKC------APGEMVGALAAQ 146
+E + L+ + V+ A+ A N C ++ L+A
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 147 SLGEPATQMTLNTFHFA---GVSSKNVTLGVPRL-KEIINISKKPKAPSLTVFLTGQAAR 202
+ + T + K + L +E++ + P+ S+
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--PRRLSII--------- 333
Query: 203 DAEKAKNVLCRLE---HTTLRKVLYII------LRPATHYQ 234
AE ++ L + H K+ II L PA + +
Sbjct: 334 -AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.5 bits (63), Expect = 1.7
Identities = 13/72 (18%), Positives = 17/72 (23%), Gaps = 37/72 (51%)
Query: 43 AGSKGSNINISQV-IACVGQQNVEGKRIPFGFRKRTLPHFIKD----------------- 84
AG +G N+NI C K P ++
Sbjct: 11 AGRRGPNLNIVLTCPEC----------------KVYPPKIVERFSEGDVVCALCGLVLSD 54
Query: 85 ---DYGPESRGF 93
D E R F
Sbjct: 55 KLVDTRSEWRTF 66
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family,
iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter
acetylenicus}
Length = 727
Score = 28.0 bits (63), Expect = 3.6
Identities = 9/39 (23%), Positives = 11/39 (28%), Gaps = 12/39 (30%)
Query: 82 IKDDYGPESRGFV-------ENSYLAGLTPSEFFFHAMG 113
I YGPES G F + +G
Sbjct: 94 IIAKYGPESLGVSQTEINQQSEYGTLRR-----FMNLLG 127
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 27.7 bits (61), Expect = 4.9
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 1 MLALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 60
ML+++ + V ++ ++ N+ + VV G S ++ + V
Sbjct: 332 MLSIRDLTRSAVQEHIDATNQHLPEDRHIGISLVNSARNFVVTGPPISLYGLNLRLRKVK 391
Query: 61 -QQNVEGKRIPFGFRK 75
++ RIPF RK
Sbjct: 392 APTGLDQNRIPFTQRK 407
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 26.3 bits (59), Expect = 8.5
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 37 LKAMVVAGSKGSNINISQVIACVGQQNV 64
++ M G S IN+S + VG ++
Sbjct: 125 IQRMKNKGLGASIINMSSIEGFVGDPSL 152
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_G* 3hmj_G*
Length = 2051
Score = 26.9 bits (59), Expect = 8.7
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 1 MLALKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 60
ML++ + QV +N + ++ N K +VV+G S ++ +
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 61 -QQNVEGKRIPFGFRK 75
++ RIPF RK
Sbjct: 398 APSGLDQSRIPFSERK 413
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 26.3 bits (59), Expect = 9.4
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 38 KAMVVAGSKGSNINISQVIACVGQQNV 64
+ ++ G G+ +N+S + N
Sbjct: 120 RGLIARGVPGAIVNVSSQCSQRAVTNH 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.382
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,745,239
Number of extensions: 219561
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 36
Length of query: 258
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 166
Effective length of database: 4,133,061
Effective search space: 686088126
Effective search space used: 686088126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)