RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3022
         (258 letters)



>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 1449

 Score =  144 bits (364), Expect = 7e-40
 Identities = 92/125 (73%), Positives = 106/125 (84%)

Query: 4   LKQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 63
           L+++FE+ V R LN+ARDK G  A+ +L + NN+K MV+AGSKGS INI+Q+ ACVGQQ+
Sbjct: 709 LRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQS 768

Query: 64  VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 123
           VEGKRI FGF  RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 769 VEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 828

Query: 124 KTAET 128
           KTAET
Sbjct: 829 KTAET 833



 Score = 89.1 bits (220), Expect = 1e-20
 Identities = 60/97 (61%), Positives = 71/97 (73%)

Query: 130  CNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKA 189
              +   PGEMVG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K  K 
Sbjct: 1053 LRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKT 1112

Query: 190  PSLTVFLTGQAARDAEKAKNVLCRLEHTTLRKVLYII 226
            PSLTV+L    A D E+AK +   +EHTTL+ V    
Sbjct: 1113 PSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIAS 1149


>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
            [TaxId: 274]}
          Length = 1504

 Score =  119 bits (298), Expect = 5e-31
 Identities = 28/71 (39%), Positives = 47/71 (66%), Gaps = 2/71 (2%)

Query: 129  ACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVS-SKNVTLGVPRLKEIINISKKP 187
            +     + GE VG +AAQS+GEP TQ+T+ TFH  GV+ + ++T G+PR+ E+   +++P
Sbjct: 1209 SMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVIELFE-ARRP 1267

Query: 188  KAPSLTVFLTG 198
            KA ++   + G
Sbjct: 1268 KAKAVISEIDG 1278



 Score = 94.1 bits (233), Expect = 2e-22
 Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 23/127 (18%)

Query: 5    KQTFENQVNRILNDARDKTGGSAKKSLTE---YNNLKAMVVAGSKGSNINISQVIACVGQ 61
             +   +Q+ ++  +  +K   +  K+  E   +N L  M  +G++G+   I Q+      
Sbjct: 984  DRERYDQILQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLR-- 1041

Query: 62   QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 121
                                ++   G      V +S+  GLT  E+F  + G R+G  DT
Sbjct: 1042 ------------------GLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGADT 1083

Query: 122  AVKTAET 128
            A++TA++
Sbjct: 1084 ALRTADS 1090


>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
           {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
           4932]}
          Length = 342

 Score = 26.5 bits (57), Expect = 3.2
 Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 24  GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 83
            GS + ++++    +         S   +  VI  +GQ +   + IP  FR   L + ++
Sbjct: 244 AGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIP--FRNSKLTYLLQ 301

Query: 84  DDYGPESRGFVENSYLAGLTPSEFFF 109
                +S+  +       ++PS    
Sbjct: 302 YSLTGDSKTLM----FVNISPSSSHI 323


>d1du5a_ b.25.1.1 (A:) Zeamatin {Maize (Zea mays) [TaxId: 4577]}
          Length = 206

 Score = 26.1 bits (57), Expect = 4.3
 Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 5/74 (6%)

Query: 131 NAKCAPGEMVGALAAQSLGEPATQMTLNTF-HFAGVSSKNVTLG----VPRLKEIINISK 185
              C  G+  G L     G     +       F  +   +++L     VP        S 
Sbjct: 58  RGSCRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSG 117

Query: 186 KPKAPSLTVFLTGQ 199
             + P   V +  +
Sbjct: 118 CSRGPRCAVDVNAR 131


>d1rqwa_ b.25.1.1 (A:) Thaumatin {Ketemfe (Thaumatococcus daniellii)
           [TaxId: 4621]}
          Length = 207

 Score = 25.7 bits (56), Expect = 4.8
 Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 2/77 (2%)

Query: 125 TAETACNAKCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL--GVPRLKEIIN 182
             + + +  C  G+  G L  +  G P T +   + +  G    +++   G     +   
Sbjct: 57  YFDDSGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSP 116

Query: 183 ISKKPKAPSLTVFLTGQ 199
            ++  +       + GQ
Sbjct: 117 TTRGCRGVRCAADIVGQ 133


>d1mrja_ d.165.1.1 (A:) alpha-Trichosanthin {Mongolian snake gourd
           (Trichosanthes kirilowii Maxim.) [TaxId: 3677]}
          Length = 247

 Score = 25.3 bits (55), Expect = 7.1
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 6/46 (13%)

Query: 163 AGVSSKNVTLGVPRLKEIINI----SKKPKAPSLTVFL--TGQAAR 202
           AG   +N+ LG+P L   I      +    A +L V +  T +AAR
Sbjct: 118 AGKIRENIPLGLPALDSAITTLFYYNANSAASALMVLIQSTSEAAR 163


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0525    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 874,365
Number of extensions: 38368
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 10
Length of query: 258
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,268,006
Effective search space: 221901050
Effective search space used: 221901050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)