BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3023
(392 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|324120560|dbj|BAJ78671.1| RNA polymerase II largest subunit [Cryptotympana facialis]
Length = 1803
Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust.
Identities = 309/395 (78%), Positives = 336/395 (85%), Gaps = 5/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MAM+DSKAPLR VK+VQFGILSPDEIRRMSVTEGGI+FPETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MAMSDSKAPLRSVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR SRCQTCAGNM+ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK
Sbjct: 61 DRHSRCQTCAGNMSECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
++++V+KTKGQ R+R F+YDLCKGKNICEGGDEMD+NK+ EDPN+ Q +KQGHGGCGR
Sbjct: 121 IKEIVMKTKGQPRKRLTFVYDLCKGKNICEGGDEMDLNKENIEDPNNPQ-RKQGHGGCGR 179
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSG 237
YQPN+RR+GLD+TAEWKH NEDSQEKKI L+ + V + K C P R
Sbjct: 180 YQPNLRRTGLDVTAEWKHANEDSQEKKIALSAERVWEIFKHITDEECFILGMDPKFARPD 239
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V + + G DDLTHKL+DIIKCNNELIRNE SGAATHVIAE
Sbjct: 240 W-MIVTVLPVPPLPVRPAVVMYGSARNQDDLTHKLSDIIKCNNELIRNEQSGAATHVIAE 298
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPGLPRAMQKSGKPLKA+KARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 299 NIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKALKARLKGKEGRIRGNLMGKRVDFSART 358
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNL IDQVGVPRSIAQNMTFPEIVTPFN+D
Sbjct: 359 VITPDPNLGIDQVGVPRSIAQNMTFPEIVTPFNID 393
>gi|324120558|dbj|BAJ78670.1| RNA polymerase II largest subunit [Gynaikothrips ficorum]
Length = 1687
Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust.
Identities = 306/404 (75%), Positives = 334/404 (82%), Gaps = 22/404 (5%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAPLRCVK+VQFGILSPDEIRRMSVTEGGIK+PETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MATSDSKAPLRCVKRVQFGILSPDEIRRMSVTEGGIKYPETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGF+TKTIKILRCVCFYCSKLLVSP++PK
Sbjct: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPNNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+++VV+K+KGQ R+R F+YDLCKGKNICEGGDEMD+NK+ +DPN Q +KQGHGGCGR
Sbjct: 121 IKEVVMKSKGQPRKRLTFVYDLCKGKNICEGGDEMDVNKENVDDPNKEQPRKQGHGGCGR 180
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDL 240
YQPN+RR GLD+TAEWKHVNEDSQEKKI LT + V K I L
Sbjct: 181 YQPNLRRVGLDVTAEWKHVNEDSQEKKINLTAERVWEILKH----------IIDEECFIL 230
Query: 241 TAEWKHVNEDSQ------------EKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESS 288
+ K+ D + + G DDLTHKLADI+K NNEL+RNE +
Sbjct: 231 GMDPKYARPDWMIVTVLPVPPLCVRPAVVMYGSARNQDDLTHKLADILKANNELVRNEQA 290
Query: 289 GAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMG 348
G A HV+AENIKMLQFHVATL DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMG
Sbjct: 291 GTAAHVLAENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMG 350
Query: 349 KRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
KRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD
Sbjct: 351 KRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 394
>gi|324120564|dbj|BAJ78673.1| RNA polymerase II largest subunit [Bemisia tabaci]
Length = 1793
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 305/394 (77%), Positives = 337/394 (85%), Gaps = 2/394 (0%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAPLR VK+VQFGILSPDEIRRMSVTEGGI++PETMEGGRPKLGGLMDPRQGV+
Sbjct: 1 MATSDSKAPLRSVKRVQFGILSPDEIRRMSVTEGGIQYPETMEGGRPKLGGLMDPRQGVV 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR SRCQTCAGNM+ECPGHFGHIDLAKPV HVGF+TKTIK+LRCVCFYCSKLLVSPSHPK
Sbjct: 61 DRMSRCQTCAGNMSECPGHFGHIDLAKPVLHVGFITKTIKVLRCVCFYCSKLLVSPSHPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
V+++V+K+KGQ R+R AFIYDLCKGKNICEGGDE+DI K+ +DP+ Q KKQGHGGCGR
Sbjct: 121 VKEIVMKSKGQPRKRLAFIYDLCKGKNICEGGDEIDIAKENPDDPSREQPKKQGHGGCGR 180
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD 239
YQPNIRR+GLDLTAEWKHVNEDSQEKKIPLT + V + K C + R + D
Sbjct: 181 YQPNIRRAGLDLTAEWKHVNEDSQEKKIPLTAERVWEILKHIIDEECLILGMDPRYARPD 240
Query: 240 -LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
+ V S + + G DDLTHKL+DIIKCNNELIRNE +GA+ HVI+EN
Sbjct: 241 WMIVTSLPVPPLSVRPAVVMHGSARNQDDLTHKLSDIIKCNNELIRNEKAGASAHVISEN 300
Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
IKMLQFHVATL DNDMPGLPRAMQKSGKPLKAIK+RLKGKEGRIRGNLMGKRVDFSARTV
Sbjct: 301 IKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKSRLKGKEGRIRGNLMGKRVDFSARTV 360
Query: 359 ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ITPDPNLRIDQVGVPRSIAQN+TFPEIVTPFN D
Sbjct: 361 ITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNFD 394
>gi|324120548|dbj|BAJ78665.1| RNA polymerase II largest subunit [Zorotypus sp. 154-1]
Length = 1862
Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust.
Identities = 301/393 (76%), Positives = 332/393 (84%), Gaps = 4/393 (1%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDR 62
M+DSKAP+R VK+VQFGILSPDEIRRMSVTEGGI+FPETMEGGRPKLGGLMDPRQGVIDR
Sbjct: 1 MSDSKAPVRYVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDR 60
Query: 63 SSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVR 122
+SRCQTCAGN TECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP++P+++
Sbjct: 61 NSRCQTCAGNQTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPTNPRIK 120
Query: 123 DVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQ 182
+V+ K+KGQ R+R F+YDLCKGKNICEGGDEMDI KD +DP++ QN+KQGHGGCGRYQ
Sbjct: 121 EVLAKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKDNPDDPSTQQNRKQGHGGCGRYQ 180
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV--LLNKKQGHGGCGR-YQPNIRRSGLD 239
PNIRRSGLDLTAEWKHVNED+QEKKI LT + V + C P R
Sbjct: 181 PNIRRSGLDLTAEWKHVNEDNQEKKISLTAERVWEIFKHITDEECCALGMDPKFARPDWM 240
Query: 240 LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENI 299
+ V S + + G DDLTHKL+DIIK NNELIRNE +G A HVIAENI
Sbjct: 241 IVTVLP-VPPLSVRPAVVMYGSARNQDDLTHKLSDIIKANNELIRNEQAGGAAHVIAENI 299
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
KMLQFHVATL DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI
Sbjct: 300 KMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN+D
Sbjct: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNID 392
>gi|324120538|dbj|BAJ78660.1| RNA polymerase II largest subunit [Euconocephalus varius]
Length = 1640
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 303/395 (76%), Positives = 334/395 (84%), Gaps = 4/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAPLR VK+VQFGILSPDEIRRMSVTEGGI+FPET EGGRPKLGGLMDPRQGV+
Sbjct: 1 MASSDSKAPLRTVKRVQFGILSPDEIRRMSVTEGGIRFPETYEGGRPKLGGLMDPRQGVM 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGN TECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP++PK
Sbjct: 61 DRNSRCQTCAGNQTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPTNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+++VV+K+KGQ R+R F+YDLCKGKNICEGGDEMDI K+ A+DPN+ Q +K GHGGCGR
Sbjct: 121 IKEVVMKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKENADDPNNQQPRKVGHGGCGR 180
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSG 237
YQP+IRRSGLDLTAEWKHVNEDSQEKKI L+ + V + K C P R
Sbjct: 181 YQPSIRRSGLDLTAEWKHVNEDSQEKKIALSAERVWEILKHITDEECFILGMDPKFARPD 240
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V S + + G DDLTHKLADIIK NNELIRNE +GAA HVI+E
Sbjct: 241 WMIVTVLP-VPPLSVRPAVVMYGSARNQDDLTHKLADIIKANNELIRNEQAGAAAHVISE 299
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 300 NIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 359
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN+D
Sbjct: 360 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNID 394
>gi|324120534|dbj|BAJ78658.1| RNA polymerase II largest subunit [Karoophasma biedouwense]
Length = 1907
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 302/395 (76%), Positives = 332/395 (84%), Gaps = 4/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MAM DSKAP+R VK+VQFGIL+PDEIRRMSVTEGGI+FPET EGGRPKLGGLMDPRQGVI
Sbjct: 1 MAMTDSKAPVRSVKRVQFGILAPDEIRRMSVTEGGIRFPETYEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGN TECPGHFGHIDLAKPVFHVGF+TKTIKILRCVCFYCSK+LVSP++PK
Sbjct: 61 DRNSRCQTCAGNQTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKMLVSPTNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+++VV+K+KGQ R+R F+YDLCKGKNICEGGDEMDI KD +DPNS Q +K GHGGCGR
Sbjct: 121 IKEVVMKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKDNPDDPNSQQPRKAGHGGCGR 180
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSG 237
YQP+IRR GLDLTAEWKHVNEDSQEKKI L+ + V + K C P + R
Sbjct: 181 YQPSIRRVGLDLTAEWKHVNEDSQEKKISLSAERVWEILKHITDEECFILGMDPKLARPD 240
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V + + + G DDLTHKLADIIK NNEL+RNE +GAA HVI E
Sbjct: 241 WMIVTVLP-VPPLAVRPAVVMYGSARNQDDLTHKLADIIKSNNELVRNEQAGAAAHVILE 299
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 300 NIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 359
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN+D
Sbjct: 360 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNID 394
>gi|324120532|dbj|BAJ78657.1| RNA polymerase II largest subunit [Galloisiana yuasai]
Length = 1904
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 302/396 (76%), Positives = 334/396 (84%), Gaps = 6/396 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA+ADSKAP+R VK+VQFGIL+PDEIRRMSVTEGGI+FPET EGGRPKLGGLMDPRQGVI
Sbjct: 1 MALADSKAPVRSVKRVQFGILAPDEIRRMSVTEGGIRFPETYEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGN TECPGHFGHIDLAKPVFHVGF+TKTIKILRCVCFYCSK+LVSP++PK
Sbjct: 61 DRNSRCQTCAGNQTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKMLVSPTNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+++VV+K+KGQ R+R F+YDLCKGKNICEGGDEMDI KD +DPNS Q +K GHGGCGR
Sbjct: 121 IKEVVMKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKDNPDDPNSQQPRKAGHGGCGR 180
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGC---GRYQPNIRRS 236
YQP+IRR GLDLTAEWKH+NEDSQEKKI L+ + V + K C G R
Sbjct: 181 YQPSIRRIGLDLTAEWKHINEDSQEKKISLSAERVWEILKHITDEECFILGMDHKFARPD 240
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ +T V + + G DDLTHKLADIIK NNEL+RNE +GAA HVI+
Sbjct: 241 WMIITV--LPVPPLCVRPAVVMYGSARNQDDLTHKLADIIKSNNELVRNEQAGAAAHVIS 298
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
ENIKMLQFHVATL DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 299 ENIKMLQFHVATLIDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 358
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN+D
Sbjct: 359 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNID 394
>gi|324120566|dbj|BAJ78674.1| RNA polymerase II largest subunit [Uroleucon nigrotuberculatum]
Length = 1862
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 304/395 (76%), Positives = 329/395 (83%), Gaps = 5/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAP+R VK+VQFGILS DE RRMSVTEGGI+F ETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MAASDSKAPIRSVKRVQFGILSADECRRMSVTEGGIRFAETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR SRCQTCAGNMTEC GHFGHI+LAKPVFHVGFVTK IKILRCVCFYCSKLLVSP+HPK
Sbjct: 61 DRFSRCQTCAGNMTECCGHFGHIELAKPVFHVGFVTKAIKILRCVCFYCSKLLVSPTHPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
V+++V+K+KGQ R+R AFIYDLCKGKNICEGGDE+DINKD DPN + KKQGHGGCGR
Sbjct: 121 VKEIVMKSKGQQRKRLAFIYDLCKGKNICEGGDELDINKDNVNDPN-MPPKKQGHGGCGR 179
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV---LLNKKQGHGGCGRYQPNIRRSG 237
YQP IRR GLDLTAEWKHVNEDSQEKKIPLT + V L + P R
Sbjct: 180 YQPTIRRVGLDLTAEWKHVNEDSQEKKIPLTAERVHEILKHITDEEVVIMGMDPKFARPD 239
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V I + G DDLTHKL+DIIKCNNELIRNE SGAATH+IAE
Sbjct: 240 W-MVLTVLPVPPLPVRPAIVMFGSMRNQDDLTHKLSDIIKCNNELIRNEQSGAATHIIAE 298
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NI+MLQ+HVATL DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 299 NIRMLQYHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 358
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRID+VGVPR+IAQNMTFPEIVTPFN+D
Sbjct: 359 VITPDPNLRIDEVGVPRTIAQNMTFPEIVTPFNID 393
>gi|193700005|ref|XP_001943054.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1862
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 304/395 (76%), Positives = 329/395 (83%), Gaps = 5/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAP+R VK+VQFGILS DE RRMSVTEGGI+F ETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MAASDSKAPIRSVKRVQFGILSADECRRMSVTEGGIRFAETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR SRCQTCAGNMTEC GHFGHI+LAKPVFHVGFVTK IKILRCVCFYCSKLLVSP+HPK
Sbjct: 61 DRFSRCQTCAGNMTECCGHFGHIELAKPVFHVGFVTKAIKILRCVCFYCSKLLVSPTHPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
V+++V+K+KGQ R+R AFIYDLCKGKNICEGGDE+DINKD DPN + KKQGHGGCGR
Sbjct: 121 VKEIVMKSKGQQRKRLAFIYDLCKGKNICEGGDELDINKDNVNDPN-MPPKKQGHGGCGR 179
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV---LLNKKQGHGGCGRYQPNIRRSG 237
YQP IRR GLDLTAEWKHVNEDSQEKKIPLT + V L + P R
Sbjct: 180 YQPTIRRVGLDLTAEWKHVNEDSQEKKIPLTAERVHEILKHITDEEVVIMGMDPKFARPD 239
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V I + G DDLTHKL+DIIKCNNELIRNE SGAATH+IAE
Sbjct: 240 W-MVLTVLPVPPLPVRPAIVMFGSMRNQDDLTHKLSDIIKCNNELIRNEQSGAATHIIAE 298
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NI+MLQ+HVATL DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 299 NIRMLQYHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 358
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRID+VGVPR+IAQNMTFPEIVTPFN+D
Sbjct: 359 VITPDPNLRIDEVGVPRTIAQNMTFPEIVTPFNID 393
>gi|322801476|gb|EFZ22137.1| hypothetical protein SINV_09846 [Solenopsis invicta]
Length = 1905
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 299/395 (75%), Positives = 332/395 (84%), Gaps = 6/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAPLR VK+VQFGI+SPDEIRRMSVT+GGI+FPETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MATSDSKAPLRTVKRVQFGIISPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGNMTECPGHFGHIDLAKPVFHVGF+TKTIKILRCVCFYCSKLLV+P +PK
Sbjct: 61 DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVNPHNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
++++V+KTKGQ R+R AF+YDLCK KNICEGGDEMDINK+ E N Q++K GHGGCGR
Sbjct: 121 IKEIVMKTKGQPRKRLAFVYDLCKSKNICEGGDEMDINKENTE--NQPQDRKPGHGGCGR 178
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK---GVLLNKKQGHGGCGRYQPNIRRSG 237
YQPN+RRSGLD+TAEWKHVNEDSQEKK L+ + +L + K P R
Sbjct: 179 YQPNLRRSGLDVTAEWKHVNEDSQEKKTILSAERAFEILKHIKDEESFILGMDPKFARPD 238
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V S + + G DDLTHKLADIIK NNEL+RNE SGAA HVI+E
Sbjct: 239 WMIVTVLP-VPPLSVRPAVIMYGSAKNQDDLTHKLADIIKSNNELLRNEQSGAAAHVISE 297
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 298 NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPRSIAQN+TFPEIVTPFN+D
Sbjct: 358 VITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNID 392
>gi|324120552|dbj|BAJ78667.1| RNA polymerase II largest subunit [Blattella nipponica]
Length = 1598
Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust.
Identities = 301/395 (76%), Positives = 331/395 (83%), Gaps = 4/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAPLR VK+VQFGIL+PDEIRRMSVTEGGIKF ET EGGRPKL GLMDPRQGV+
Sbjct: 1 MAFSDSKAPLRAVKRVQFGILAPDEIRRMSVTEGGIKFAETYEGGRPKLQGLMDPRQGVM 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGN TECPGHFGHIDLAKPVFHVGF+TK+IKILRCVCFYCSK+LVSP++PK
Sbjct: 61 DRNSRCQTCAGNQTECPGHFGHIDLAKPVFHVGFLTKSIKILRCVCFYCSKMLVSPTNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+++VV+K+KGQ R+R F+YDLCKGKNICEGGDEMDI KD +DP + Q +KQGHGGCGR
Sbjct: 121 IKEVVMKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKDNPDDPANQQPRKQGHGGCGR 180
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSG 237
YQPNIRR+GLDLTAEWKHVNEDSQEKKI L+ + V + K C P R
Sbjct: 181 YQPNIRRTGLDLTAEWKHVNEDSQEKKISLSAERVWEIFKHITDEECYILGMDPKFARPD 240
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V S + + G DDLTHKLADIIK NNELIRNE +GAA HVI+E
Sbjct: 241 WMIVTVLP-VPPLSVRPAVVMYGSARNQDDLTHKLADIIKSNNELIRNEQAGAAAHVISE 299
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 300 NIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 359
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN+D
Sbjct: 360 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNID 394
>gi|332023552|gb|EGI63788.1| DNA-directed RNA polymerase II subunit RPB1 [Acromyrmex echinatior]
Length = 1906
Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust.
Identities = 299/395 (75%), Positives = 333/395 (84%), Gaps = 5/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKA LR VK+VQFGILSPDEIRRMSVT+GGI+FPETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MATSDSKASLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGNMTECPGHFGHIDLAKPVFHVGF+TKTIKILRCVCFYCSKLLV+P +PK
Sbjct: 61 DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVNPHNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
++++V+KTKGQ R+R AF+YDLCK KNICEGGDEMDINK+ AE+ + ++K GHGGCGR
Sbjct: 121 IKEIVMKTKGQPRKRLAFVYDLCKSKNICEGGDEMDINKENAENQPQM-DRKPGHGGCGR 179
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK---GVLLNKKQGHGGCGRYQPNIRRSG 237
YQPN+RRSGLD+TAEWKHVNEDSQEKKI L+ + +L + K P R
Sbjct: 180 YQPNLRRSGLDVTAEWKHVNEDSQEKKIILSAERAWEILKHIKDEESFILGMDPKFARPD 239
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V S + + G DDLTHKLADIIK NNEL+RNE SGAA HVI+E
Sbjct: 240 WMIVTVLP-VPPLSVRPAVIMYGSAKNQDDLTHKLADIIKSNNELVRNEQSGAAAHVISE 298
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 299 NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 358
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPRSIAQN+TFPEIVTPFN+D
Sbjct: 359 VITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNID 393
>gi|324120554|dbj|BAJ78668.1| RNA polymerase II largest subunit [Reticulitermes speratus]
Length = 1732
Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust.
Identities = 304/401 (75%), Positives = 334/401 (83%), Gaps = 17/401 (4%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA DSKAPLR VK+VQFGIL+PDEIRRMSVTEGGI+FPET EGGRPKL GLMDPRQGV+
Sbjct: 1 MAFLDSKAPLRTVKRVQFGILAPDEIRRMSVTEGGIRFPETYEGGRPKLQGLMDPRQGVM 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGN TECPGHFGHIDLAKPVFHVGF+TKTIKILRCVCFYCSK+LVSP++PK
Sbjct: 61 DRNSRCQTCAGNQTECPGHFGHIDLAKPVFHVGFLTKTIKILRCVCFYCSKMLVSPANPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+++VV+K+KGQ R+R F+YDLCKGKNICEGGDEMDI KD E PNS Q +KQGHGGCGR
Sbjct: 121 IKEVVMKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKDNDE-PNSQQPRKQGHGGCGR 179
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD 239
YQPNIRRSGLDLTAEWKHVNEDSQEKKI L+ + V + + C G+D
Sbjct: 180 YQPNIRRSGLDLTAEWKHVNEDSQEKKISLSAERVWEILRHITDEECYIL-------GMD 232
Query: 240 LT---AEWK-----HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAA 291
T +W V S + + G DDLTHKLADIIK NNEL+RNE +GAA
Sbjct: 233 ATFARPDWMIMTVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIIKSNNELVRNEQAGAA 292
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
HVI+ENIKMLQFHVATL DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV
Sbjct: 293 AHVISENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 352
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DFSARTVITPDPNLRIDQVGVPRSIAQN+TFPEIVTPFN+D
Sbjct: 353 DFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNID 393
>gi|324120570|dbj|BAJ78676.1| RNA polymerase II largest subunit [Neocolochelyna itoi]
Length = 1815
Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust.
Identities = 298/395 (75%), Positives = 332/395 (84%), Gaps = 5/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAP+R VK+VQFGILSPDEIRRMSVT+GGI+FPETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MATSDSKAPIRVVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGNMTECPGHFGHIDLAKPVFHVGF+TK+IKILRCVCFYCSKLLVSP +PK
Sbjct: 61 DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKSIKILRCVCFYCSKLLVSPHNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+++VV+KTKGQ R+R F+YDLCK KNICEGGDEMDINK+G E P + ++K GHGGCGR
Sbjct: 121 IKEVVMKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKEGQEQPQA-ADRKPGHGGCGR 179
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK---GVLLNKKQGHGGCGRYQPNIRRSG 237
YQPN+RRSGLD++AEWKHVNEDSQEKKI LT + +L + P R
Sbjct: 180 YQPNLRRSGLDVSAEWKHVNEDSQEKKIVLTAERAWEILKHITDEESFILGMDPKFARPD 239
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V S + + G DDLTHKLADIIK NNEL+RNE +GAA HVI+E
Sbjct: 240 WMIVTVLP-VPPLSVRPAVVMYGSAKNQDDLTHKLADIIKSNNELLRNEQAGAAAHVISE 298
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 299 NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 358
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPRSIAQN+TFPEIVTPFN+D
Sbjct: 359 VITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNID 393
>gi|324120550|dbj|BAJ78666.1| RNA polymerase II largest subunit [Tenodera aridifolia]
Length = 1844
Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust.
Identities = 300/395 (75%), Positives = 330/395 (83%), Gaps = 4/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA DSKA LRCVK+VQFGIL+PDEIRRMSVTEGGI+F ET EGGRPKLGGLMDPRQGV+
Sbjct: 1 MATNDSKATLRCVKRVQFGILAPDEIRRMSVTEGGIRFSETYEGGRPKLGGLMDPRQGVM 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSKLLVSP++PK
Sbjct: 61 DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPTNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+++VV+K+KGQ R+R F+YDLCKGKNICEGGDEMDI K+ +DPN Q +K GHGGCGR
Sbjct: 121 IKEVVMKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIMKENPDDPNQQQPRKAGHGGCGR 180
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSG 237
YQPNIRR+GLDLTAEWKHVNEDSQEKKI L+ + V + K C P R
Sbjct: 181 YQPNIRRAGLDLTAEWKHVNEDSQEKKIALSAERVWEILKHITDEECYILGMDPKFARPD 240
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V + + + G DDLTHKLADIIK NNEL+RNE +GAA HVI E
Sbjct: 241 WMIVTVLP-VPPLAVRPAVVMYGSARNQDDLTHKLADIIKANNELMRNEQAGAAAHVILE 299
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 300 NIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 359
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN+D
Sbjct: 360 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNID 394
>gi|307181433|gb|EFN69028.1| DNA-directed RNA polymerase II subunit RPB1 [Camponotus floridanus]
Length = 1906
Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust.
Identities = 299/395 (75%), Positives = 333/395 (84%), Gaps = 5/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAPLR VK+VQFGILSPDEIRRMSVT+GGI+FPETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGNMTECPGHFGHIDLAKPVFHVGF+TKTIKILRCVCFYCSKLLVSP +PK
Sbjct: 61 DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
++++V+KTKGQ R+R AF+YDLCK K+ICEGGDEMDINK+ AE+ + ++K GHGGCGR
Sbjct: 121 IKEIVMKTKGQPRKRLAFVYDLCKSKSICEGGDEMDINKENAENQPQM-DRKPGHGGCGR 179
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK---GVLLNKKQGHGGCGRYQPNIRRSG 237
YQPN+RRSGLD+TAEWKHVNEDSQEKK+ L+ + +L + K P R
Sbjct: 180 YQPNLRRSGLDVTAEWKHVNEDSQEKKMILSAERAWEILKHIKDEESFILGMDPKFARPD 239
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V S + + G DDLTHKLADIIK NNEL+RNE SGAA HVI E
Sbjct: 240 WMIVTVLP-VPPLSVRPAVIMYGSAKNQDDLTHKLADIIKSNNELLRNEQSGAAAHVILE 298
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 299 NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 358
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPRSIAQN+TFPEIVTPFN+D
Sbjct: 359 VITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNID 393
>gi|324120562|dbj|BAJ78672.1| RNA polymerase II largest subunit [Anacanthocoris striicornis]
Length = 1743
Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust.
Identities = 303/395 (76%), Positives = 330/395 (83%), Gaps = 5/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA DSKAPLR VK+VQFGILSPDEIRRMSVTEGGI+FPETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MATNDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR SRCQTCAGNM+ECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSKLLVSPSHPK
Sbjct: 61 DRMSRCQTCAGNMSECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPSHPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
++++VLK+KGQ R+R F+YDLCKGKNICEGGDEMDI KDG +D + N+K GHGGCGR
Sbjct: 121 IKEIVLKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKDGMDDGGA-SNRKPGHGGCGR 179
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSG 237
YQPN+RR+GL++TAEWKHVNED QEKKI L+ + V + K C P R
Sbjct: 180 YQPNLRRTGLEVTAEWKHVNEDGQEKKISLSAERVWEILKHITDEECFILGMDPKFARPD 239
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V + + G DDLTHKLADIIKCNNEL RNE SGAATHVIAE
Sbjct: 240 WMIVTVLP-VPPLCVRPAVVMYGSARNQDDLTHKLADIIKCNNELTRNEHSGAATHVIAE 298
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 299 NIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 358
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPR+IA NMTFPEIVTPFN+D
Sbjct: 359 VITPDPNLRIDQVGVPRTIALNMTFPEIVTPFNID 393
>gi|324120536|dbj|BAJ78659.1| RNA polymerase II largest subunit [Nomadacris japonica]
Length = 1659
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 299/395 (75%), Positives = 333/395 (84%), Gaps = 4/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
M+ DSKAP+R VK+VQFGILSPDEIRRMSVTEGGI++ ET EGGRPKLGGLMDPRQGV+
Sbjct: 1 MSTNDSKAPVRYVKRVQFGILSPDEIRRMSVTEGGIRYSETYEGGRPKLGGLMDPRQGVM 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGN TECPGHFGHIDLAKPVFHVGF+TKTIKILRCVCFYCSKLLVSP++PK
Sbjct: 61 DRNSRCQTCAGNQTECPGHFGHIDLAKPVFHVGFLTKTIKILRCVCFYCSKLLVSPTNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+++VV+K+KGQ R+R ++YDLCKGKNICEGGDEMD+NKD +DPN+ Q +KQGHGGCGR
Sbjct: 121 IKEVVMKSKGQPRKRLTYVYDLCKGKNICEGGDEMDLNKDNPDDPNNQQPRKQGHGGCGR 180
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSG 237
YQP+IRR+GLDLTAEWKHVNEDSQEKKI L+ + V + K C P R
Sbjct: 181 YQPSIRRAGLDLTAEWKHVNEDSQEKKISLSAERVWEILKHITDEECFILGMDPKFARPD 240
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V S + + G DDLTHKLADIIK NNEL+RNE +GAA HVI+E
Sbjct: 241 W-MICTVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIIKSNNELMRNEQAGAAAHVISE 299
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 300 NIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 359
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN+D
Sbjct: 360 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNID 394
>gi|324120572|dbj|BAJ78677.1| RNA polymerase II largest subunit [Vespa analis insularis]
Length = 1708
Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust.
Identities = 298/395 (75%), Positives = 331/395 (83%), Gaps = 6/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAPLR VK+VQFGILSPDEIRRMSVT+GGI+FPETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGNMTECPGHFGHIDLAKPVFHVGF+TKTIKILRCVCFYCSKLLVSP +PK
Sbjct: 61 DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
++++V+KTKGQ R+R F+YDLCK KNICEGGDEMDINK+ +E + ++K GHGGCGR
Sbjct: 121 IKEIVMKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKENSEQQPT--DRKPGHGGCGR 178
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK---GVLLNKKQGHGGCGRYQPNIRRSG 237
YQPN+RRSGLD+TAEWKHVNEDSQEKKI LT + +L + P R
Sbjct: 179 YQPNLRRSGLDVTAEWKHVNEDSQEKKIVLTAERAWEILKHITDEESFILGMDPKFARPD 238
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V S + + G DDLTHKLADIIK NNEL+RNE +GAA HVI+E
Sbjct: 239 W-MVVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKSNNELLRNEQAGAAAHVISE 297
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 298 NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPRSIAQN+TFPEIVTPFN+D
Sbjct: 358 VITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNID 392
>gi|340722779|ref|XP_003399779.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
terrestris]
gi|350424170|ref|XP_003493710.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
impatiens]
Length = 1902
Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust.
Identities = 297/395 (75%), Positives = 329/395 (83%), Gaps = 6/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAPLR VK+VQFGILSPDEIRRMSVT+GGI+FPETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGNMTECPGHFGHIDLAKPVFHVGF+TKTIKILRCVCFYCSKLLVSP +PK
Sbjct: 61 DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
++++V+KTKGQ R+R F+YDLCK KNICEGGDEMDINK+ E ++ +K GHGGCGR
Sbjct: 121 IKEIVMKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKENQEQQSA--ERKPGHGGCGR 178
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK---GVLLNKKQGHGGCGRYQPNIRRSG 237
YQPN+RRSGLD+TAEW HVNEDSQEKK+ LT + +L + P R
Sbjct: 179 YQPNLRRSGLDVTAEWTHVNEDSQEKKMALTAERAWEILKHITDEESFILGMDPKFARPD 238
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V S + + G DDLTHKLADIIK NNELIRNE +GAA HVI+E
Sbjct: 239 W-MVVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKANNELIRNEQAGAAAHVISE 297
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 298 NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPRSIAQN+TFPEIVTPFN+D
Sbjct: 358 VITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNID 392
>gi|383857287|ref|XP_003704136.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Megachile rotundata]
Length = 1904
Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust.
Identities = 297/395 (75%), Positives = 330/395 (83%), Gaps = 6/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAPLR VK+VQFGILSPDEIRRMSVT+GGI+FPETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGNMTECPGHFGHIDLAKPVFHVGF+TKTIKILRCVCFYCSKLLV P +PK
Sbjct: 61 DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVGPHNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
++++V+KTKGQ R+R F+YDLCK KNICEGGDEMDINK+ + N+ ++K GHGGCGR
Sbjct: 121 IKEIVMKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKENQDQQNT--DRKPGHGGCGR 178
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK---GVLLNKKQGHGGCGRYQPNIRRSG 237
YQPN++RSGLD+TAEWKHVNEDSQEKKI LT + +L + P R
Sbjct: 179 YQPNLQRSGLDVTAEWKHVNEDSQEKKIALTAERAWEILKHITDEESFILGMDPKFARPD 238
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V S + + G DDLTHKLADIIK NNELIRNE +GAA HVI+E
Sbjct: 239 W-MVVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKANNELIRNEQAGAAAHVISE 297
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 298 NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPRSIAQN+TFPEIVTPFN+D
Sbjct: 358 VITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNID 392
>gi|307198840|gb|EFN79616.1| DNA-directed RNA polymerase II subunit RPB1 [Harpegnathos saltator]
Length = 1906
Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust.
Identities = 299/395 (75%), Positives = 331/395 (83%), Gaps = 5/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAPLR VK+VQFGILSPDEIRRMSVT+GGI+FPETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGNMTECPGHFGHIDLAKPVFHVGF+TKTIKILRCVCFYCSKLLVSP +PK
Sbjct: 61 DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFLTKTIKILRCVCFYCSKLLVSPHNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+++V++KTKGQ R+R IYDLCK KNICEGGDEMDINK+ +E+ ++ +K GHGGCGR
Sbjct: 121 IKEVIMKTKGQPRKRLTHIYDLCKSKNICEGGDEMDINKENSENQPPVE-RKPGHGGCGR 179
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK---GVLLNKKQGHGGCGRYQPNIRRSG 237
YQPN+RRSGLD+TAEWKHVNEDSQEKKI LT + +L + K P R
Sbjct: 180 YQPNLRRSGLDVTAEWKHVNEDSQEKKIVLTAERAWEILKHIKDEESFILGMDPKFARPD 239
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V S + + G DDLTHKLADIIK NNEL+RNE SGAA HVI+E
Sbjct: 240 WMIVTVLP-VPPLSVRPAVIMYGSAKNQDDLTHKLADIIKSNNELLRNEQSGAAAHVISE 298
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFH ATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 299 NIKMLQFHAATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 358
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPRSIAQN+TFPEIVTPFN+D
Sbjct: 359 VITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNID 393
>gi|270010112|gb|EFA06560.1| hypothetical protein TcasGA2_TC009471 [Tribolium castaneum]
Length = 1899
Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust.
Identities = 300/395 (75%), Positives = 332/395 (84%), Gaps = 7/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAPLR VK+VQFGILSPDEIRRMSVTEGGI+FPETME GRPK+GGLMDPRQGVI
Sbjct: 1 MAASDSKAPLRTVKRVQFGILSPDEIRRMSVTEGGIRFPETMEAGRPKMGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR SRCQTCAGNMTECPGHFGHIDLAKPVFHVGF+TKTIK LRCVCFYCSKLLVSP++PK
Sbjct: 61 DRHSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKTLRCVCFYCSKLLVSPNNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+++VV+K+KGQ R+R AF+YDLCKGKNICEGGDEMD+ K+G EDPN Q KKQGHGGCGR
Sbjct: 121 IKEVVMKSKGQPRKRLAFVYDLCKGKNICEGGDEMDVGKEG-EDPN--QAKKQGHGGCGR 177
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSG 237
YQPNIRR+GLDLTAEWKH+NEDSQE+KI L+ + V + K C P R
Sbjct: 178 YQPNIRRTGLDLTAEWKHLNEDSQERKIALSAERVWEILKHITDEECFILGMDPKFARPD 237
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V + + G DDLTHKLADIIK NNEL +NE++GAA HVI+E
Sbjct: 238 W-MIVTVLPVPPLPVRPAVVMYGSARNQDDLTHKLADIIKANNELQKNEAAGAAAHVISE 296
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPG+PRAMQKSGKPLKAIK+RLKGKEGRIRGNLMGKRVDFSART
Sbjct: 297 NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKSRLKGKEGRIRGNLMGKRVDFSART 356
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPRSIAQN+TFPEIVTPFN D
Sbjct: 357 VITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNFD 391
>gi|324120578|dbj|BAJ78680.1| RNA polymerase II largest subunit [Chrysoperla nipponensis]
Length = 1705
Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust.
Identities = 300/395 (75%), Positives = 332/395 (84%), Gaps = 6/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAPLR VKKVQFGILSPDEIRRMSVT+GGI+FPETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MAASDSKAPLRFVKKVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGNM+ECPGHFGHIDL+KPVFHVGF+TKTIKILRCVCFYCSKLLVSP++PK
Sbjct: 61 DRNSRCQTCAGNMSECPGHFGHIDLSKPVFHVGFITKTIKILRCVCFYCSKLLVSPTNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
++++V+K+KGQ R+R AF+YDLCKGKNICEGGDEMDINK+ +D + KQ HGGCGR
Sbjct: 121 IKEIVMKSKGQPRKRLAFVYDLCKGKNICEGGDEMDINKE--DDGRGISTAKQTHGGCGR 178
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSG 237
YQPNIRR+GLDLTAEWKHVNEDSQEKKIPL+ + V + K C P R
Sbjct: 179 YQPNIRRAGLDLTAEWKHVNEDSQEKKIPLSAERVWEILKHITDEECFILGMDPKFARPD 238
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V + + G DDLTHKL+DIIK NNEL RNE +GAA HVI+E
Sbjct: 239 W-MIVTVLPVPPLPVRPAVVMYGSAKNQDDLTHKLSDIIKSNNELARNEQAGAAAHVISE 297
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 298 NIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPRSIAQN+TFPEIVTPFN+D
Sbjct: 358 VITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNID 392
>gi|324120540|dbj|BAJ78661.1| RNA polymerase II largest subunit [Teleogryllus emma]
Length = 1909
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 299/396 (75%), Positives = 331/396 (83%), Gaps = 5/396 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA DSKAPLR VK+VQFGIL+PDEIRRMSVTEGGI+FPETMEGGRPKLGGLMDPRQGV+
Sbjct: 1 MATNDSKAPLRSVKRVQFGILAPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVM 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGN TECPGHFGHIDLAKPVFHVGF+TKTIKILRCVCFYCSKLLVSP++PK
Sbjct: 61 DRNSRCQTCAGNQTECPGHFGHIDLAKPVFHVGFLTKTIKILRCVCFYCSKLLVSPTNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDG-AEDPNSLQNKKQGHGGCG 179
++++V+K+KGQ R+R F+YDLCKGKNICEGGDEMDI K+ DPN Q++K GHGGCG
Sbjct: 121 IKEIVMKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKENDPNDPNQQQSRKAGHGGCG 180
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRS 236
RYQP+IRRSGLDLTAEWKHVNEDSQEKKI L+ + V + K C P R
Sbjct: 181 RYQPSIRRSGLDLTAEWKHVNEDSQEKKISLSAERVWEILKHITDEECFILGMDPKFARP 240
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ V S + + G DD+THK +DIIK NNELIRNE +GAA HVI+
Sbjct: 241 DWMIVTVLP-VPPLSVRPAVVMYGSARNQDDITHKTSDIIKSNNELIRNEQAGAAAHVIS 299
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
ENIKMLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 300 ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 359
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN+D
Sbjct: 360 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNID 395
>gi|380029407|ref|XP_003698365.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Apis florea]
Length = 1893
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 298/395 (75%), Positives = 330/395 (83%), Gaps = 6/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAPLR VK+VQFGILSPDEIRRMSVT+GGI+FPETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGNMTECPGHFGHIDLAKPVFHVGF+TKTIKILRCVCFYCSKLLVSP +PK
Sbjct: 61 DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
++++V+KTKGQ R+R F+YDLCK KNICEGGDEMDINK+ E S++ +K GHGGCGR
Sbjct: 121 IKEIVMKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKENQEQ-QSIE-RKPGHGGCGR 178
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK---GVLLNKKQGHGGCGRYQPNIRRSG 237
YQPN+RRSGLD+TAEW HVNEDSQEKK+ LT + +L + P R
Sbjct: 179 YQPNLRRSGLDVTAEWTHVNEDSQEKKMALTAERAWEILKHITDEESFILGMDPKFARPD 238
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V S + + G DDLTHKLADIIK NNELIRNE +GAA HVI+E
Sbjct: 239 W-MVVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKANNELIRNEQAGAAAHVISE 297
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 298 NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPRSIAQN+TFPEIVTPFN+D
Sbjct: 358 VITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNID 392
>gi|328793442|ref|XP_623281.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Apis mellifera]
Length = 1883
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 298/395 (75%), Positives = 330/395 (83%), Gaps = 6/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAPLR VK+VQFGILSPDEIRRMSVT+GGI+FPETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGNMTECPGHFGHIDLAKPVFHVGF+TKTIKILRCVCFYCSKLLVSP +PK
Sbjct: 61 DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
++++V+KTKGQ R+R F+YDLCK KNICEGGDEMDINK+ E S++ +K GHGGCGR
Sbjct: 121 IKEIVMKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKENQEQ-QSIE-RKPGHGGCGR 178
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK---GVLLNKKQGHGGCGRYQPNIRRSG 237
YQPN+RRSGLD+TAEW HVNEDSQEKK+ LT + +L + P R
Sbjct: 179 YQPNLRRSGLDVTAEWTHVNEDSQEKKMALTAERAWEILKHITDEESFILGMDPKFARPD 238
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V S + + G DDLTHKLADIIK NNELIRNE +GAA HVI+E
Sbjct: 239 W-MVVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKANNELIRNEQAGAAAHVISE 297
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 298 NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPRSIAQN+TFPEIVTPFN+D
Sbjct: 358 VITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNID 392
>gi|324120582|dbj|BAJ78682.1| RNA polymerase II largest subunit [Eretes sticticus]
Length = 1677
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 300/395 (75%), Positives = 330/395 (83%), Gaps = 7/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA+ DSKAPLR VK+VQFGILSPDEIRRMSVTEGGI+FPETME GRPKLGGLMDPRQGVI
Sbjct: 1 MAVNDSKAPLRYVKRVQFGILSPDEIRRMSVTEGGIRFPETMEAGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSP++PK
Sbjct: 61 DRHSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPNNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+++VV+K+KGQ R+R AF+YDLCKGKNICEGGDEMD+NK+ E+ + KKQGHGGCGR
Sbjct: 121 IKEVVMKSKGQPRKRLAFVYDLCKGKNICEGGDEMDVNKENEEN---VPGKKQGHGGCGR 177
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSG 237
YQPNI+R+GLDL AEWKH+NEDSQEKKI L+ + V + K C P R
Sbjct: 178 YQPNIKRTGLDLVAEWKHINEDSQEKKISLSAERVWEILKHITDEECFILGMDPKFARPD 237
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V + + G DDLTHKLADIIK NNEL RNE++GAA HVI+E
Sbjct: 238 W-MIVTVLPVPPLPVRPAVVMYGSAKNQDDLTHKLADIIKANNELQRNEAAGAAAHVISE 296
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 297 NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 356
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPRSIAQN+TFPEIVTPFN D
Sbjct: 357 VITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNFD 391
>gi|91085731|ref|XP_973470.1| PREDICTED: similar to GA13798-PA [Tribolium castaneum]
Length = 2007
Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust.
Identities = 299/398 (75%), Positives = 331/398 (83%), Gaps = 8/398 (2%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAPLR VK+VQFGILSPDEIRRMSVTEGGI+FPETME GRPK+GGLMDPRQGVI
Sbjct: 1 MAASDSKAPLRTVKRVQFGILSPDEIRRMSVTEGGIRFPETMEAGRPKMGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR SRCQTCAGNMTECPGHFGHIDLAKPVFHVGF+TKTIK LRCVCFYCSKLLVSP++PK
Sbjct: 61 DRHSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKTLRCVCFYCSKLLVSPNNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNS---LQNKKQGHGG 177
+++VV+K+KGQ R+R AF+YDLCKGKNICEGGDEMD+ K+G EDPN KKQGHGG
Sbjct: 121 IKEVVMKSKGQPRKRLAFVYDLCKGKNICEGGDEMDVGKEG-EDPNQEFGFLAKKQGHGG 179
Query: 178 CGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIR 234
CGRYQPNIRR+GLDLTAEWKH+NEDSQE+KI L+ + V + K C P
Sbjct: 180 CGRYQPNIRRTGLDLTAEWKHLNEDSQERKIALSAERVWEILKHITDEECFILGMDPKFA 239
Query: 235 RSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
R + V + + G DDLTHKLADIIK NNEL +NE++GAA HV
Sbjct: 240 RPDW-MIVTVLPVPPLPVRPAVVMYGSARNQDDLTHKLADIIKANNELQKNEAAGAAAHV 298
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I+ENIKMLQFHVATL DNDMPG+PRAMQKSGKPLKAIK+RLKGKEGRIRGNLMGKRVDFS
Sbjct: 299 ISENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKSRLKGKEGRIRGNLMGKRVDFS 358
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNLRIDQVGVPRSIAQN+TFPEIVTPFN D
Sbjct: 359 ARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNFD 396
>gi|324120584|dbj|BAJ78683.1| RNA polymerase II largest subunit [Lucidina biplagiata]
Length = 1685
Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust.
Identities = 301/395 (76%), Positives = 330/395 (83%), Gaps = 9/395 (2%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA DSKAPLR VK+VQFGILSPDEIRRMSVTEGGI+FPETME GRPKLGGLMDPRQGVI
Sbjct: 1 MAANDSKAPLRYVKRVQFGILSPDEIRRMSVTEGGIRFPETMEAGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGNMTECPGHFGHIDL+KPVFHVGF+TKTIKILRCVCFYCSKLLVSP++PK
Sbjct: 61 DRNSRCQTCAGNMTECPGHFGHIDLSKPVFHVGFITKTIKILRCVCFYCSKLLVSPNNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+++VV+K+KGQ R+R F+YDLCKGKNICEGGDEMD+ K+G EDP K+QGHGGCGR
Sbjct: 121 IKEVVMKSKGQPRKRLTFVYDLCKGKNICEGGDEMDVGKEG-EDP----GKRQGHGGCGR 175
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSG 237
YQPNIRR+GLDLTAEWKHVNEDSQEKKIPL+ + V + K C P R
Sbjct: 176 YQPNIRRAGLDLTAEWKHVNEDSQEKKIPLSAERVWEILKHITDEECFILGMDPKFARPD 235
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V + + G DDLTHKLADIIK NNEL RNES+GA HVI+E
Sbjct: 236 W-MIVTVLPVPPLPVRPAVVMYGSAKNQDDLTHKLADIIKSNNELQRNESTGAPAHVISE 294
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPG+PRAMQKSGKPLKA+KARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 295 NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKALKARLKGKEGRIRGNLMGKRVDFSART 354
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPRSIAQN+TFPEIVTPFN D
Sbjct: 355 VITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNFD 389
>gi|328722767|ref|XP_001943949.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1958
Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust.
Identities = 299/395 (75%), Positives = 327/395 (82%), Gaps = 5/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAP+R VK+VQFGILS DE RRMSVTEGGI+F ETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MAASDSKAPIRTVKRVQFGILSADECRRMSVTEGGIRFAETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR SRCQTCAGNMTEC GHFGHI+LAKPVFH+GF+TK IKILRCVCFYCSKLLVSP+HPK
Sbjct: 61 DRFSRCQTCAGNMTECCGHFGHIELAKPVFHIGFLTKAIKILRCVCFYCSKLLVSPTHPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
V+++V+K+KGQ R+R AF+YDLCKGKNICEGGDE+DINKD D N + KKQGHGGCGR
Sbjct: 121 VKEIVMKSKGQQRKRLAFVYDLCKGKNICEGGDELDINKDNINDSN-MPPKKQGHGGCGR 179
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV---LLNKKQGHGGCGRYQPNIRRSG 237
YQP IRR GLDLTAEWKHVNEDSQEKKIPLT + V L + P R
Sbjct: 180 YQPTIRRVGLDLTAEWKHVNEDSQEKKIPLTAERVYEILKHITDEEVVIMGMDPKFARPD 239
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V I + G DDLTHKL+DIIKCNNELIRNE SGAATH+IAE
Sbjct: 240 W-MVLTVLPVPPLPVRPAIVMFGSMRNQDDLTHKLSDIIKCNNELIRNEQSGAATHIIAE 298
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NI+MLQ+HVATL DND PGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 299 NIRMLQYHVATLVDNDSPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 358
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRID+VGVPR+IAQNMTFPEIVTPFN+D
Sbjct: 359 VITPDPNLRIDEVGVPRTIAQNMTFPEIVTPFNID 393
>gi|324120542|dbj|BAJ78662.1| RNA polymerase II largest subunit [Oyamia lugubris]
Length = 1742
Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust.
Identities = 298/402 (74%), Positives = 336/402 (83%), Gaps = 17/402 (4%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGG-IKFPETMEGGRPKLGGLMDPRQGV 59
MA +DSKAPLR VKKVQFGILSPDEIRRMSVT+GG I+FPET EGGRPK+GGLMDPRQGV
Sbjct: 1 MATSDSKAPLRMVKKVQFGILSPDEIRRMSVTDGGGIRFPETYEGGRPKIGGLMDPRQGV 60
Query: 60 IDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHP 119
+DR+SRCQTCAGN TECPGHFGHI+L KPVFH+GF+TKTIKILRCVCFYCSK+LVSP++P
Sbjct: 61 MDRNSRCQTCAGNQTECPGHFGHIELGKPVFHIGFITKTIKILRCVCFYCSKMLVSPNNP 120
Query: 120 KVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCG 179
K+R+VV K+KGQ+R+R A++YDLCKG+NICEGGDEMDI KD +DP+ +N+KQGHGGCG
Sbjct: 121 KIREVVQKSKGQNRKRLAYVYDLCKGRNICEGGDEMDIQKDNPDDPSLQKNQKQGHGGCG 180
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGL 238
RYQP+IRRSGLDLTAEWKHVNEDSQEKKI L+ + V + K C R G+
Sbjct: 181 RYQPSIRRSGLDLTAEWKHVNEDSQEKKIVLSAERVWEILKHITDEEC-------RTLGM 233
Query: 239 D---LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGA 290
D +W V S + + G DDLTHKLADIIK NNELIRNE +GA
Sbjct: 234 DPQFARPDWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIIKSNNELIRNEQAGA 293
Query: 291 ATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
A H+++EN+KMLQFHVATL DNDMPGLPRAMQKSGKPLKAIK+RLKGKEGRIRGNLMGKR
Sbjct: 294 AAHILSENVKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKSRLKGKEGRIRGNLMGKR 353
Query: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN D
Sbjct: 354 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNFD 395
>gi|242011894|ref|XP_002426678.1| predicted protein [Pediculus humanus corporis]
gi|212510849|gb|EEB13940.1| predicted protein [Pediculus humanus corporis]
Length = 1885
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 293/395 (74%), Positives = 332/395 (84%), Gaps = 4/395 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAPLR VK+VQFGILSPDEIRRMSVT+GGIK+PET EGGRPK+GGLMDPRQGV+
Sbjct: 1 MATSDSKAPLRSVKRVQFGILSPDEIRRMSVTDGGIKYPETYEGGRPKIGGLMDPRQGVV 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR SRCQTCAGNMTECPGHFGHIDLAKPVFHVGF+TKTIKILRCVCF+CSKLLVSP++ K
Sbjct: 61 DRMSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFLTKTIKILRCVCFFCSKLLVSPNNAK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
++++V K++GQ R+R F+YDLCKGKNICEGGDEMDI KD A++P++ ++KK GHGGCGR
Sbjct: 121 IKEIVTKSRGQPRKRLTFVYDLCKGKNICEGGDEMDITKDNADNPDNSKDKKGGHGGCGR 180
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSG 237
YQPNIRR+GLDLTAEWKH NED+QEKKI L+ + V + K C P R
Sbjct: 181 YQPNIRRTGLDLTAEWKHTNEDNQEKKIALSAERVWEILKHITDEECLILGMDPKFARPD 240
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
L V S + + G DDLTHKLADIIK NNELIRNE +GAA H+I+E
Sbjct: 241 WMLVTVLP-VPPLSVRPAVVMYGSARNQDDLTHKLADIIKANNELIRNEQAGAAAHIISE 299
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPG+PRAMQKSGKPLKA+KARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 300 NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKALKARLKGKEGRIRGNLMGKRVDFSART 359
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPRSIAQN+TFPEI+TPFN+D
Sbjct: 360 VITPDPNLRIDQVGVPRSIAQNLTFPEIITPFNID 394
>gi|324120516|dbj|BAJ78649.1| RNA polymerase II largest subunit [Thermobia domestica]
Length = 1699
Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust.
Identities = 292/390 (74%), Positives = 331/390 (84%), Gaps = 3/390 (0%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DSKAPLR VK+VQFGILSPDEIRRMSVTEGGI+FPETMEGGRPKLGGLMDPRQGV+DR S
Sbjct: 6 DSKAPLRTVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVMDRMS 65
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHIDLAKPV+H+GF+TKTIKILRCVCFYCSKLLVSP++PK++++
Sbjct: 66 RCQTCAGNMTECPGHFGHIDLAKPVYHIGFITKTIKILRCVCFYCSKLLVSPNNPKIKEI 125
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPN 184
V+K+KGQ R+R AF+YDLCKGKNICEGGDEMD+ K+ +DP+S Q K+ GHGGCGRYQP+
Sbjct: 126 VMKSKGQPRKRFAFVYDLCKGKNICEGGDEMDVQKENPDDPSS-QAKRSGHGGCGRYQPS 184
Query: 185 IRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTA 242
IRR+GLDLTAEWKHVNEDSQEKKI L+ + V + K C + + + D +
Sbjct: 185 IRRAGLDLTAEWKHVNEDSQEKKISLSAERVWEIFKHISDEECFILGMDPKYARPDWMIV 244
Query: 243 EWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKML 302
V + + G DDLTHKLADIIK NNEL RNE +GAA HVIAENIKML
Sbjct: 245 TVLPVPPLPVRPAVVMYGSARNQDDLTHKLADIIKANNELTRNEQAGAAAHVIAENIKML 304
Query: 303 QFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD 362
QFHVATL DNDMPG+P+AMQKSGKP+KAIK RLKGKEGRIRGNLMGKRVDFSARTVITPD
Sbjct: 305 QFHVATLVDNDMPGMPKAMQKSGKPIKAIKGRLKGKEGRIRGNLMGKRVDFSARTVITPD 364
Query: 363 PNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PNLRIDQVGVPRS+AQN+TFPEIVTPFN+D
Sbjct: 365 PNLRIDQVGVPRSVAQNLTFPEIVTPFNID 394
>gi|324120544|dbj|BAJ78663.1| RNA polymerase II largest subunit [Euborellia plebeja]
Length = 1812
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 298/396 (75%), Positives = 330/396 (83%), Gaps = 7/396 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAPLR VK+VQFGILSPDE+RRMSVTEGGIK+ ET EGGRPKLGGLMDPRQGV+
Sbjct: 1 MAASDSKAPLRTVKRVQFGILSPDEVRRMSVTEGGIKYSETYEGGRPKLGGLMDPRQGVM 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DRS+RCQTCAGN ECPGHFGHIDLAKPVFH+G++ K IKILRCVCFYCSKLLVSP++PK
Sbjct: 61 DRSTRCQTCAGNQVECPGHFGHIDLAKPVFHIGYLVKAIKILRCVCFYCSKLLVSPTNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+++VV+KTKGQ R+R ++YDLCKGKNICEGGDEMDI K+G +DPN Q KK GHGGCGR
Sbjct: 121 IKEVVMKTKGQPRKRLVYVYDLCKGKNICEGGDEMDIPKEGQDDPNG-QGKKVGHGGCGR 179
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGC---GRYQPNIRRS 236
YQPNIRRSGLDLTAEWKHVNEDSQEKKI LT + V + K C G R
Sbjct: 180 YQPNIRRSGLDLTAEWKHVNEDSQEKKIVLTAQRVWEIFKHITDEECFILGMDPKFARPD 239
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ LT V + + + G DDLTHKLADIIK NNEL+ NE +GAA HV+A
Sbjct: 240 WMILTV--LPVPPLAVRPAVVMYGSARNQDDLTHKLADIIKANNELVHNEQAGAAAHVLA 297
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
ENIK+LQFHVATL DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 298 ENIKLLQFHVATLIDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 357
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN++
Sbjct: 358 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNLE 393
>gi|324120522|dbj|BAJ78652.1| RNA polymerase II largest subunit [Mnais pruinosa pruinosa]
Length = 1557
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 296/396 (74%), Positives = 334/396 (84%), Gaps = 4/396 (1%)
Query: 1 MAM-ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGV 59
MA+ DSKA +R VK+VQFGI+SPDEIRRMSVT+GGI+F ETMEGGRPKLGGLMDPRQGV
Sbjct: 1 MALCTDSKATIRTVKRVQFGIISPDEIRRMSVTDGGIRFSETMEGGRPKLGGLMDPRQGV 60
Query: 60 IDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHP 119
IDR SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSKLLVSP++P
Sbjct: 61 IDRLSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPNNP 120
Query: 120 KVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDP-NSLQNKKQGHGGC 178
K++++V+K+KGQ R+R F+YDLCKGKNICEGGDEMDI KDG +DP QN+K GHGGC
Sbjct: 121 KIKEIVMKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKDGVDDPGGGQQNRKAGHGGC 180
Query: 179 GRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSG 237
GRYQP+IRR+GLDLTAEWKHVNEDSQEKKI L+ + V + K C + + +
Sbjct: 181 GRYQPSIRRAGLDLTAEWKHVNEDSQEKKIALSAERVWEIFKHITDEECFIMGMDPKYAR 240
Query: 238 LD-LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
D + V S + + G DDLTHKL+DIIK NNEL+RNE +GAA HV++
Sbjct: 241 PDWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKLSDIIKSNNELLRNEQAGAAAHVLS 300
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
ENIKMLQFHVATL DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 301 ENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 360
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVITPDPNLRIDQVGVPRSIAQN+TFPEIVTPFN+D
Sbjct: 361 TVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNID 396
>gi|324120518|dbj|BAJ78650.1| RNA polymerase II largest subunit [Isolepisma japonica]
Length = 1775
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 297/396 (75%), Positives = 330/396 (83%), Gaps = 6/396 (1%)
Query: 1 MAM-ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGV 59
MA+ DSKAPLR VK+VQFGILSPDEIRRMSVTEGGI+FPETMEGGRPKLGGLMDPRQGV
Sbjct: 1 MALCTDSKAPLRTVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGV 60
Query: 60 IDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHP 119
+DR SRCQTCAGNMTECPGHFGHIDLAKPV+H+GF+TKTIKILRCVCFYCSKLLVSPS+P
Sbjct: 61 MDRLSRCQTCAGNMTECPGHFGHIDLAKPVYHIGFITKTIKILRCVCFYCSKLLVSPSNP 120
Query: 120 KVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCG 179
K++++V+K+KGQ R+R AF+YDLCKGKNICEGGDEMDI KD +DP + Q K+ GHGGCG
Sbjct: 121 KIKEIVMKSKGQPRKRFAFVYDLCKGKNICEGGDEMDIQKDNPDDPAN-QPKRSGHGGCG 179
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRS 236
RYQP+IRR GLDLTAEWKHVNEDSQEKKI L+ + V + K C P R
Sbjct: 180 RYQPSIRRIGLDLTAEWKHVNEDSQEKKINLSAERVWEIFKHISDEECFILGMDPKFARP 239
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ V + + G DDLTHKLADIIK NNEL RNE +GAA HVIA
Sbjct: 240 DW-MIVTVLPVPPLPVRPAVVMYGSARNQDDLTHKLADIIKANNELTRNEQAGAAAHVIA 298
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
ENIKMLQFHVATL DNDMPG+P+AMQKSGKP+KAIK RLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 299 ENIKMLQFHVATLVDNDMPGMPKAMQKSGKPIKAIKNRLKGKEGRIRGNLMGKRVDFSAR 358
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVITPDPNLRIDQVGVPRS+AQN+TFPEIVTPFN+D
Sbjct: 359 TVITPDPNLRIDQVGVPRSVAQNLTFPEIVTPFNID 394
>gi|345487216|ref|XP_003425653.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Nasonia vitripennis]
Length = 1907
Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust.
Identities = 295/396 (74%), Positives = 329/396 (83%), Gaps = 9/396 (2%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKA +R VK+VQFGILSPDEIRRMSVTEGGI+F ETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MATSDSKAMIRTVKRVQFGILSPDEIRRMSVTEGGIRFAETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGNMTECPGHFGHIDLAKPVFH GF+TKTIKILRCVCFYCSK+LVSP +PK
Sbjct: 61 DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHCGFITKTIKILRCVCFYCSKMLVSPHNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCG 179
++++++KTKGQ R+R F+YDLCK KNICEGGDEMDI K+G E DP NKK GHGGCG
Sbjct: 121 IKEIIMKTKGQPRKRLTFVYDLCKSKNICEGGDEMDITKEGQEQDP----NKKPGHGGCG 176
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK---GVLLNKKQGHGGCGRYQPNIRRS 236
RYQPN+RRSGLD+TAEWKHVNEDSQEKKI LT + +L + P R
Sbjct: 177 RYQPNLRRSGLDVTAEWKHVNEDSQEKKIALTAERAWEILKHITDEESFILGMDPKFARP 236
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ V + + + G DDLTHKL+DIIK NNEL+RNE +GAATHVI+
Sbjct: 237 DWMIVTVLP-VPPLAVRPAVVMYGSAKNQDDLTHKLSDIIKSNNELLRNEQAGAATHVIS 295
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
ENIKMLQFHVATL DNDMPG+P+AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 296 ENIKMLQFHVATLVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 355
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVITPDPNLRIDQVGVPRSIAQN+TFPEIVTPFN+D
Sbjct: 356 TVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNID 391
>gi|324120524|dbj|BAJ78653.1| RNA polymerase II largest subunit [Ephemera japonica]
Length = 1660
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 290/397 (73%), Positives = 331/397 (83%), Gaps = 5/397 (1%)
Query: 1 MAM-ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGV 59
MA+ DSKAPLR V++VQFGILSPDEIRRMSVTEGGI+FPET EGGRPKLGGLMDPRQGV
Sbjct: 1 MALCTDSKAPLRPVRRVQFGILSPDEIRRMSVTEGGIRFPETYEGGRPKLGGLMDPRQGV 60
Query: 60 IDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHP 119
IDR+SRCQTCAGNMTECPGHFGHI+L+KPVFHVGF+ +TIKILRCVCFYCSK+LVSP++P
Sbjct: 61 IDRNSRCQTCAGNMTECPGHFGHIELSKPVFHVGFIKQTIKILRCVCFYCSKMLVSPTNP 120
Query: 120 KVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSL--QNKKQGHGG 177
K++++V+KTKGQ R+R F+YDLCKGKNICEGGDEMD+ KD +P+ NKKQGHGG
Sbjct: 121 KIKEIVMKTKGQPRKRLTFVYDLCKGKNICEGGDEMDLAKDPERNPDDPGGPNKKQGHGG 180
Query: 178 CGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRS 236
CGRYQPNIRR+GLDL+AEWKH NED+QEKKI L+ + V + K C + + +
Sbjct: 181 CGRYQPNIRRAGLDLSAEWKHANEDTQEKKIALSAERVYEIFKHISDEECFIMGMDPKYA 240
Query: 237 GLD-LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVI 295
D + A V + + G DDLTHKLADIIK NNEL RNE +GAA HV+
Sbjct: 241 RPDWMVATVLPVPPLCVRPAVVMYGSARNQDDLTHKLADIIKSNNELARNEQAGAAAHVL 300
Query: 296 AENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 355
+EN KMLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA
Sbjct: 301 SENTKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 360
Query: 356 RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
RTVITPDPNLRIDQVGVPRSIAQN+TFPEIVTPFN++
Sbjct: 361 RTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNLE 397
>gi|324120592|dbj|BAJ78687.1| RNA polymerase II largest subunit [Ctenocephalides felis]
Length = 1749
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 288/396 (72%), Positives = 329/396 (83%), Gaps = 9/396 (2%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAPLR VKKVQFGIL+PDEIRRMSVTEGGI+F ETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MAASDSKAPLRTVKKVQFGILAPDEIRRMSVTEGGIRFSETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGNMTECPGHFGHIDLAKPVFH+GFVTKT+KILRCVCFYCSK+LVSP +PK
Sbjct: 61 DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFVTKTLKILRCVCFYCSKMLVSPQNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGA-EDPNSLQNKKQGHGGCG 179
+++VV K+KGQ R+R A++YDLCKGK ICEGG++MD+ K+GA DP NKK GHGGCG
Sbjct: 121 IKEVVSKSKGQPRKRLAYVYDLCKGKKICEGGEDMDLTKEGAPADP----NKKAGHGGCG 176
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRS 236
YQP++RR+GLD+TAEWKHVN++SQEKKI ++ + V + K C P R
Sbjct: 177 HYQPSLRRTGLDITAEWKHVNDESQEKKIFVSAERVWEILKHITDEECFVLGMDPKFARP 236
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ V + + + G DDLTHKL+DIIK NNEL+RNE+SGAA HVI
Sbjct: 237 DW-MIITVMPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELMRNEASGAAAHVIT 295
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
ENIKMLQFHVAT DNDMPG+PRAMQKSGKPLKA+KARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 296 ENIKMLQFHVATFVDNDMPGMPRAMQKSGKPLKAVKARLKGKEGRIRGNLMGKRVDFSAR 355
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVITPDPNLRIDQVGVPRSIAQNMTFPE+VTPFN++
Sbjct: 356 TVITPDPNLRIDQVGVPRSIAQNMTFPELVTPFNIE 391
>gi|324120576|dbj|BAJ78679.1| RNA polymerase II largest subunit [Inocellia japonica]
Length = 1913
Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust.
Identities = 289/391 (73%), Positives = 326/391 (83%), Gaps = 6/391 (1%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DSKA +R VK+VQFGILSPDEIRRMSVT+GGI+FPETMEGG+PK+GGLMDPRQGVIDR+S
Sbjct: 6 DSKATVRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGQPKMGGLMDPRQGVIDRNS 65
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
C+TC GNMT+CPGHFGHIDL+KPVFHVGFVTKTIKILRCVCFYCSKLLVSPS+PK++++
Sbjct: 66 CCKTCTGNMTQCPGHFGHIDLSKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSNPKIKEI 125
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPN 184
V+K+KGQ R+R AF+YDLCKGK+ICEGGDEMDI K+ +D S+ K HGGCGRYQPN
Sbjct: 126 VMKSKGQPRKRLAFVYDLCKGKHICEGGDEMDIGKE--DDGRSISTAKNTHGGCGRYQPN 183
Query: 185 IRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLDLT 241
IRR+GLDLTAEWKHVNEDSQEKKI L+ + V + K C P R +
Sbjct: 184 IRRTGLDLTAEWKHVNEDSQEKKIALSAERVWEIFKHITDEECFILGMDPKFARPDWMIV 243
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V S + + G DDLTHKLADI+K NNEL RNE+SGAA HVI+ENIKM
Sbjct: 244 TVLP-VPPLSVRPAVVMYGSARNQDDLTHKLADIVKSNNELARNEASGAAAHVISENIKM 302
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQFHVATL DNDMPGLPRAMQKSGKPLKA+KARLKGKEGRIRGNLMGKRVDFSARTVITP
Sbjct: 303 LQFHVATLVDNDMPGLPRAMQKSGKPLKAVKARLKGKEGRIRGNLMGKRVDFSARTVITP 362
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPNLRIDQVGVPRSIAQN+TFPEIVTPFN++
Sbjct: 363 DPNLRIDQVGVPRSIAQNLTFPEIVTPFNIE 393
>gi|195133818|ref|XP_002011336.1| GI16472 [Drosophila mojavensis]
gi|193907311|gb|EDW06178.1| GI16472 [Drosophila mojavensis]
Length = 1889
Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust.
Identities = 287/392 (73%), Positives = 328/392 (83%), Gaps = 7/392 (1%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DSKAPLR VK+VQFGILSPDEIRRMSVTEGG++F ET+EGGRPKLGGLMDPRQGVIDR+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK+++
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQ 182
+V+K+KGQ R+R A++YDLCKGK ICEGG++MD+ KD + DP NKK GHGGCG YQ
Sbjct: 125 IVMKSKGQPRKRLAYVYDLCKGKTICEGGEDMDMTKDNQQVDP----NKKPGHGGCGHYQ 180
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-L 240
P+IRR+GLDLTAEWKHVNEDSQEKKI ++ + V + K C + + + D +
Sbjct: 181 PSIRRTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKHITDEECFILGMDPKYARPDWM 240
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + + + G DDLTHKLADIIK NNEL +NE+SGAA HVI ENIK
Sbjct: 241 IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENIK 300
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
MLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 301 MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PDPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 361 PDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 392
>gi|427777531|gb|JAA54217.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
Length = 1941
Score = 585 bits (1509), Expect = e-165, Method: Compositional matrix adjust.
Identities = 287/394 (72%), Positives = 324/394 (82%), Gaps = 2/394 (0%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
+ +DSKAPLR VK+VQFGILSPDEIRRMSVTEGGIK+PE EGGRPKLGGLMDPRQGVI
Sbjct: 4 IVTSDSKAPLREVKRVQFGILSPDEIRRMSVTEGGIKYPEIYEGGRPKLGGLMDPRQGVI 63
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGNMTECPGHFGHIDLAKPVFH GF+TKTIKILRCVCFYCSKLLV+P++PK
Sbjct: 64 DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHCGFLTKTIKILRCVCFYCSKLLVNPNNPK 123
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
++++V KTKGQ R+R A +YDLCKGKNICEGGDE+D NKKQGHGGCGR
Sbjct: 124 IKEIVGKTKGQPRKRLAHVYDLCKGKNICEGGDEIDTKLGPDSQVQEDTNKKQGHGGCGR 183
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD 239
YQP+IRRSGLDLTAEWKH+NEDSQEKKI LT + V + K C + R + D
Sbjct: 184 YQPSIRRSGLDLTAEWKHINEDSQEKKIALTAERVWEILKHVSEEECMILGMDPRYAKPD 243
Query: 240 -LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
+ V + + + G DDLTHKLADI+K NNEL+RNE+SGAA H+IAEN
Sbjct: 244 WMLVTVLPVPPLAVRPAVVMFGSARNQDDLTHKLADIVKANNELLRNEASGAAAHIIAEN 303
Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
IKMLQFHVATL DN+MPGLPRAMQKSG+PLK+IK RLK KEGRIRGNLMGKRVDFSARTV
Sbjct: 304 IKMLQFHVATLVDNEMPGLPRAMQKSGRPLKSIKQRLKSKEGRIRGNLMGKRVDFSARTV 363
Query: 359 ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ITPDPNLRI++VGVPRSIAQN+TFPEIVTPFN+D
Sbjct: 364 ITPDPNLRINEVGVPRSIAQNLTFPEIVTPFNID 397
>gi|357628227|gb|EHJ77617.1| largest subunit of the RNA polymerase II complex [Danaus plexippus]
Length = 1895
Score = 585 bits (1509), Expect = e-165, Method: Compositional matrix adjust.
Identities = 283/391 (72%), Positives = 321/391 (82%), Gaps = 9/391 (2%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DSKAPLR VK+VQFGILSPDEIRRMSVTEGGI+FPETMEGGRPKLGGLMDPRQGVIDRSS
Sbjct: 6 DSKAPLRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRSS 65
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIK+LRCVCFYCSKLLVSP++PK+++V
Sbjct: 66 RCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKVLRCVCFYCSKLLVSPTNPKIKEV 125
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPN 184
V+K+KGQ R+R ++YDLCKGKNICEGG++MDI K+G E + GHGGCG YQP+
Sbjct: 126 VMKSKGQPRKRLTYVYDLCKGKNICEGGEDMDIGKEGEEG-----KRGTGHGGCGHYQPS 180
Query: 185 IRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV---LLNKKQGHGGCGRYQPNIRRSGLDLT 241
IRR GLDLTAEWKH NED+Q+KKI +T + V L + P R +
Sbjct: 181 IRRQGLDLTAEWKHANEDTQDKKIIITAERVYEILKHITDEDSFILGMDPKFARPDWMIV 240
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + + + G DDLTHKLADIIK NNEL+RNE SGAA HV+ +NI+M
Sbjct: 241 TVLP-VPPLAVRPAVVMFGSAKNQDDLTHKLADIIKANNELMRNEQSGAAAHVLTDNIRM 299
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQFHVAT DNDMPG+P+AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP
Sbjct: 300 LQFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 359
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 360 DPNLRIDQVGVPRSIAQNLTFPELVTPFNID 390
>gi|195059969|ref|XP_001995730.1| GH17604 [Drosophila grimshawi]
gi|193896516|gb|EDV95382.1| GH17604 [Drosophila grimshawi]
Length = 1889
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 287/392 (73%), Positives = 328/392 (83%), Gaps = 7/392 (1%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DSKAPLR VK+VQFGILSPDEIRRMSVTEGG++F ET+EGGRPKLGGLMDPRQGVIDR+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP++PK+++
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPNNPKIKE 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQ 182
+V+K+KGQ R+R A++YDLCKGK ICEGG++MD+ KD + DP NKK GHGGCG YQ
Sbjct: 125 IVMKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLAKDNQQVDP----NKKPGHGGCGHYQ 180
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-L 240
P+IRR+GLDLTAEWKHVNEDSQEKKI ++ + V + K C + + + D +
Sbjct: 181 PSIRRTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKHITDEECFILGMDPKYARPDWM 240
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + + + G DDLTHKLADIIK NNEL +NE SGAA HVI ENIK
Sbjct: 241 IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEGSGAAAHVIQENIK 300
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
MLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 301 MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PDPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 361 PDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 392
>gi|403182441|gb|EJY57389.1| AAEL017363-PA [Aedes aegypti]
Length = 1887
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 286/392 (72%), Positives = 328/392 (83%), Gaps = 9/392 (2%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DSKAPLR VKKVQFGILSPDEIRRMSVTEGGI++ ETMEGGRPKL GLMDPRQGVI+R+S
Sbjct: 4 DSKAPLRTVKKVQFGILSPDEIRRMSVTEGGIQYAETMEGGRPKLCGLMDPRQGVIERTS 63
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHIDLAKPVFH+GFVTKTIKILRCVCFYCSK+LV+PS+PK++++
Sbjct: 64 RCQTCAGNMTECPGHFGHIDLAKPVFHIGFVTKTIKILRCVCFYCSKMLVAPSNPKIKEI 123
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQP 183
V+K+KGQ R+R A++YDLCKGK ICEGG++MDI KDGA DP NKKQGHGGCG YQP
Sbjct: 124 VMKSKGQPRKRLAYVYDLCKGKKICEGGEDMDITKDGAAPDP----NKKQGHGGCGHYQP 179
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLDL 240
++RR+GLD+ AEWKHVNEDSQEKKI +T + V + K C P R +
Sbjct: 180 SLRRTGLDVIAEWKHVNEDSQEKKIAVTAERVWEILKHITDEECYVLGMDPKFARPDWMI 239
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + + + G DDLTHKL+DIIK NNEL +NE++GAA HVIAENIK
Sbjct: 240 ITVLP-VPPLAVRPAVVMFGATKNQDDLTHKLSDIIKANNELKKNEATGAAAHVIAENIK 298
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
MLQFHVATL DNDMPG+P+AMQKSGKPLK++K+RLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 299 MLQFHVATLVDNDMPGMPKAMQKSGKPLKSVKSRLKGKEGRIRGNLMGKRVDFSARTVIT 358
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PDPNLRIDQVGVPRS+AQNMTFPE+VTPFN+D
Sbjct: 359 PDPNLRIDQVGVPRSVAQNMTFPELVTPFNID 390
>gi|195399163|ref|XP_002058190.1| GJ15949 [Drosophila virilis]
gi|194150614|gb|EDW66298.1| GJ15949 [Drosophila virilis]
Length = 1889
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 286/392 (72%), Positives = 327/392 (83%), Gaps = 7/392 (1%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DSKAPLR VK+VQFGILSPDEIRRMSVTEGG++F ET+EGGRPKLGGLMDPRQGVIDR+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNMTECPGHFGHIDL KPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK+++
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLVKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQ 182
+V+K+KGQ R+R A++YDLCKGK ICEGG++MD+ KD + DP NKK GHGGCG YQ
Sbjct: 125 IVVKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQVDP----NKKPGHGGCGHYQ 180
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-L 240
P+IRR+GLDLTAEWKHVNEDSQEKKI ++ + V + K C + + + D +
Sbjct: 181 PSIRRTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKHITDEECFILGMDPKYARPDWM 240
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + + + G DDLTHKLADIIK NNEL +NE+SGAA HVI ENIK
Sbjct: 241 IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENIK 300
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
MLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 301 MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PDPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 361 PDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 392
>gi|324120586|dbj|BAJ78684.1| RNA polymerase II largest subunit [Papilio polytes]
Length = 1518
Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust.
Identities = 284/391 (72%), Positives = 321/391 (82%), Gaps = 9/391 (2%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DSKAPLR VK+VQFGILSPDEIRRMSVTEGGI+FPETMEGGRPKLGGLMDPRQGVIDR++
Sbjct: 1 DSKAPLRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRNA 60
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSKLLVSP++PK+++V
Sbjct: 61 RCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPTNPKIKEV 120
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPN 184
V+K+KGQ R+R ++YDLCKGKNICEGG++MDI K+G E + GHGGCG YQP+
Sbjct: 121 VMKSKGQPRKRLTYVYDLCKGKNICEGGEDMDIGKEGEEG-----KRGSGHGGCGHYQPS 175
Query: 185 IRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV---LLNKKQGHGGCGRYQPNIRRSGLDLT 241
IRR GLDLTAEWKH NED+QEKKI +T + V L + P R +
Sbjct: 176 IRRQGLDLTAEWKHANEDTQEKKIIITAERVWEILKHITDEESFILGMDPKFARPDWMIV 235
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V S + + G DDLTHKLADIIK NNEL+RNE GAA HV+AENI++
Sbjct: 236 TVLP-VPPLSVRPAVVMFGAAKNQDDLTHKLADIIKANNELMRNEQLGAAAHVLAENIRL 294
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQFHVAT DNDMPG+P+AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP
Sbjct: 295 LQFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 354
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 355 DPNLRIDQVGVPRSIAQNLTFPELVTPFNID 385
>gi|194889556|ref|XP_001977109.1| RNA polymerase II 215kD subunit [Drosophila erecta]
gi|190648758|gb|EDV46036.1| RNA polymerase II 215kD subunit [Drosophila erecta]
Length = 1889
Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust.
Identities = 286/391 (73%), Positives = 327/391 (83%), Gaps = 5/391 (1%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DSKAPLR VK+VQFGILSPDEIRRMSVTEGG++F ETMEGGRPKLGGLMDPRQGVIDR+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK+++
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+V+K+KGQ R+R A++YDLCKGK ICEGG++MDI K G + P+ NKK GHGGCG YQP
Sbjct: 125 IVMKSKGQPRKRLAYVYDLCKGKTICEGGEDMDITK-GNQQPDP--NKKPGHGGCGHYQP 181
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LT 241
+IRR+GLDLTAEWKH NEDSQEKKI ++ + V + K C + + + D +
Sbjct: 182 SIRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWMI 241
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + + + G DDLTHKL+DIIK NNEL +NE+SGAA HVI ENIKM
Sbjct: 242 VTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKM 301
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP
Sbjct: 302 LQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 362 DPNLRIDQVGVPRSIAQNLTFPELVTPFNID 392
>gi|195168657|ref|XP_002025147.1| GL26742 [Drosophila persimilis]
gi|194108592|gb|EDW30635.1| GL26742 [Drosophila persimilis]
Length = 1804
Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust.
Identities = 285/392 (72%), Positives = 327/392 (83%), Gaps = 7/392 (1%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DSKAPLR VK+VQFGILSPDEIRRMSVTEGG++F ETMEGGRPKLGGLMDPRQGVIDR+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK+++
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQ 182
+V+K+KGQ R+R A++YDLCKGK ICEGG++MD+ KD + DP NKK GHGGCG YQ
Sbjct: 125 IVVKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQPDP----NKKPGHGGCGHYQ 180
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-L 240
P+IRR+GLDL+AEWKH NEDSQEKKI ++ + V + K C + + + D +
Sbjct: 181 PSIRRTGLDLSAEWKHPNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWM 240
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + + + G DDLTHKL+DIIK NNEL +NE+SGAA HVI ENIK
Sbjct: 241 IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIK 300
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
MLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 301 MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PDPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 361 PDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 392
>gi|308229954|gb|ADO24384.1| RNA polymerase II large subunit, partial [Drosophila nigromaculata]
Length = 1872
Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust.
Identities = 285/389 (73%), Positives = 326/389 (83%), Gaps = 7/389 (1%)
Query: 7 KAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRC 66
KAPLR VK+VQFGILSPDEIRRMSVTEGG++F ET+EGGRPKLGGLMDPRQGVIDR+SRC
Sbjct: 1 KAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRC 60
Query: 67 QTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVL 126
QTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK++++V+
Sbjct: 61 QTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVM 120
Query: 127 KTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQPNI 185
K+KGQ R+R A++YDLCKGK ICEGG++MD+ KD + DP NKK GHGGCG YQP+I
Sbjct: 121 KSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQVDP----NKKPGHGGCGHYQPSI 176
Query: 186 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAE 243
RR+GLDLTAEWKHVNEDSQEKKI ++ + V + K C + + + D +
Sbjct: 177 RRTGLDLTAEWKHVNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWMIVT 236
Query: 244 WKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
V + + + G DDLTHKLADIIK NNEL +NE+SGAA HVI ENIKMLQ
Sbjct: 237 VLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQ 296
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
FHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP
Sbjct: 297 FHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 356
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
NLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 357 NLRIDQVGVPRSIAQNLTFPELVTPFNID 385
>gi|9587179|gb|AAF89193.1|AF272643_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587181|gb|AAF89194.1|AF272644_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587183|gb|AAF89195.1|AF272645_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587185|gb|AAF89196.1|AF272646_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587187|gb|AAF89197.1|AF272647_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587189|gb|AAF89198.1|AF272648_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587191|gb|AAF89199.1|AF272649_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587193|gb|AAF89200.1|AF272650_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587195|gb|AAF89201.1|AF272651_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587197|gb|AAF89202.1|AF272652_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587199|gb|AAF89203.1|AF272653_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|4808177|emb|CAB42800.1| largest subunit of the RNA polymerase II complex [Drosophila
subobscura]
Length = 1889
Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust.
Identities = 285/392 (72%), Positives = 327/392 (83%), Gaps = 7/392 (1%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DSKAPLR VK+VQFGILSPDEIRRMSVTEGG++F ETMEGGRPKLGGLMDPRQGVIDR+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK+++
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQ 182
+V+K+KGQ R+R A++YDLCKGK ICEGG++MD+ KD + DP NKK GHGGCG YQ
Sbjct: 125 IVVKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQPDP----NKKPGHGGCGHYQ 180
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-L 240
P+IRR+GLDL+AEWKH NEDSQEKKI ++ + V + K C + + + D +
Sbjct: 181 PSIRRTGLDLSAEWKHPNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWM 240
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + + + G DDLTHKL+DIIK NNEL +NE+SGAA HVI ENIK
Sbjct: 241 IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIK 300
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
MLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 301 MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PDPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 361 PDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 392
>gi|4808162|emb|CAB42796.1| largest subunit of the RNA polymerase II complex [Drosophila
madeirensis]
Length = 1889
Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust.
Identities = 285/392 (72%), Positives = 327/392 (83%), Gaps = 7/392 (1%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DSKAPLR VK+VQFGILSPDEIRRMSVTEGG++F ETMEGGRPKLGGLMDPRQGVIDR+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK+++
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQ 182
+V+K+KGQ R+R A++YDLCKGK ICEGG++MD+ KD + DP NKK GHGGCG YQ
Sbjct: 125 IVVKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQPDP----NKKPGHGGCGHYQ 180
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-L 240
P+IRR+GLDL+AEWKH NEDSQEKKI ++ + V + K C + + + D +
Sbjct: 181 PSIRRTGLDLSAEWKHPNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWM 240
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + + + G DDLTHKL+DIIK NNEL +NE+SGAA HVI ENIK
Sbjct: 241 IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIK 300
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
MLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 301 MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PDPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 361 PDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 392
>gi|125983594|ref|XP_001355562.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
gi|54643878|gb|EAL32621.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
Length = 1889
Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust.
Identities = 285/392 (72%), Positives = 327/392 (83%), Gaps = 7/392 (1%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DSKAPLR VK+VQFGILSPDEIRRMSVTEGG++F ETMEGGRPKLGGLMDPRQGVIDR+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK+++
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQ 182
+V+K+KGQ R+R A++YDLCKGK ICEGG++MD+ KD + DP NKK GHGGCG YQ
Sbjct: 125 IVVKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQPDP----NKKPGHGGCGHYQ 180
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-L 240
P+IRR+GLDL+AEWKH NEDSQEKKI ++ + V + K C + + + D +
Sbjct: 181 PSIRRTGLDLSAEWKHPNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWM 240
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + + + G DDLTHKL+DIIK NNEL +NE+SGAA HVI ENIK
Sbjct: 241 IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIK 300
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
MLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 301 MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PDPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 361 PDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 392
>gi|195479340|ref|XP_002100852.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
gi|194188376|gb|EDX01960.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
Length = 1889
Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust.
Identities = 285/392 (72%), Positives = 327/392 (83%), Gaps = 7/392 (1%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DSKAPLR VK+VQFGILSPDEIRRMSVTEGG++F ETMEGGRPKLGGLMDPRQGVIDR+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK+++
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQ 182
+V+K+KGQ R+R A++YDLCKGK ICEGG++MD+ K+ + DP NKK GHGGCG YQ
Sbjct: 125 IVMKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDP----NKKPGHGGCGHYQ 180
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-L 240
P+IRR+GLDLTAEWKH NEDSQEKKI ++ + V + K C + + + D +
Sbjct: 181 PSIRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWM 240
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + + + G DDLTHKL+DIIK NNEL +NE+SGAA HVI ENIK
Sbjct: 241 IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIK 300
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
MLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 301 MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PDPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 361 PDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 392
>gi|194762514|ref|XP_001963379.1| GF20366 [Drosophila ananassae]
gi|190629038|gb|EDV44455.1| GF20366 [Drosophila ananassae]
Length = 1889
Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust.
Identities = 285/392 (72%), Positives = 327/392 (83%), Gaps = 7/392 (1%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DSKAPLR VK+VQFGILSPDEIRRMSVTEGG++F ETMEGGRPKLGGLMDPRQGVIDR+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK+++
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQ 182
+V+K+KGQ R+R A++YDLCKGK ICEGG++MD+ K+ + DP NKK GHGGCG YQ
Sbjct: 125 IVMKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDP----NKKPGHGGCGHYQ 180
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-L 240
P+IRR+GLDLTAEWKH NEDSQEKKI ++ + V + K C + + + D +
Sbjct: 181 PSIRRTGLDLTAEWKHPNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWM 240
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + + + G DDLTHKL+DIIK NNEL +NE+SGAA HVI ENIK
Sbjct: 241 IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIK 300
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
MLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 301 MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PDPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 361 PDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 392
>gi|4808164|emb|CAB42795.1| largest subunit of the RNA polymerase II complex [Drosophila
guanche]
gi|40217263|emb|CAD68001.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217265|emb|CAD70679.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217267|emb|CAD70680.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217269|emb|CAD70681.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217271|emb|CAD70682.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217273|emb|CAD70683.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217275|emb|CAD70684.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217277|emb|CAD70685.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217279|emb|CAD70686.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217281|emb|CAD70687.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217283|emb|CAD70688.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217285|emb|CAD70689.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217287|emb|CAD70690.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217289|emb|CAD70691.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217291|emb|CAD70692.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217293|emb|CAD70693.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217295|emb|CAD70694.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217297|emb|CAD70695.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217299|emb|CAD70696.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217301|emb|CAD70697.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217303|emb|CAD70698.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217305|emb|CAD70699.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217307|emb|CAD70700.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217309|emb|CAD70701.1| RNA polymerase II large subunit [Drosophila guanche]
Length = 1889
Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust.
Identities = 285/392 (72%), Positives = 327/392 (83%), Gaps = 7/392 (1%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DSKAPLR VK+VQFGILSPDEIRRMSVTEGG++F ETMEGGRPKLGGLMDPRQGVIDR+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK+++
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQ 182
+V+K+KGQ R+R A++YDLCKGK ICEGG++MD+ KD + DP NKK GHGGCG YQ
Sbjct: 125 IVVKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQPDP----NKKPGHGGCGHYQ 180
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-L 240
P+IRR+GLDL+AEWKH NEDSQEKKI ++ + V + K C + + + D +
Sbjct: 181 PSIRRTGLDLSAEWKHPNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWM 240
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + + + G DDLTHKL+DIIK NNEL +NE+SGAA HVI ENIK
Sbjct: 241 IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIK 300
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
MLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 301 MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PDPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 361 PDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 392
>gi|324120556|dbj|BAJ78669.1| RNA polymerase II largest subunit [Thrips palmi]
Length = 1708
Score = 582 bits (1500), Expect = e-164, Method: Compositional matrix adjust.
Identities = 283/375 (75%), Positives = 315/375 (84%), Gaps = 4/375 (1%)
Query: 21 LSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHF 80
LSPDEIRRMSVTEGGIK+ ETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHF
Sbjct: 1 LSPDEIRRMSVTEGGIKYAETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHF 60
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIY 140
GHIDLAKPVFHVGF+TKTIKILRCVCFYCSKLLVSP++PK++++V+K+KGQ R+R F+Y
Sbjct: 61 GHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPNNPKIKEIVMKSKGQPRKRLTFVY 120
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
DLCKGK+ICEGGDEMD+NKD +DP Q +KQGHGGCGRYQPN+RR GLD++AEWKH+N
Sbjct: 121 DLCKGKHICEGGDEMDMNKDNPDDPGKEQQRKQGHGGCGRYQPNLRRVGLDVSAEWKHIN 180
Query: 201 EDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLDLTAEWKHVNEDSQEKKIP 257
EDSQEKKI LT + V + K C P R + V +
Sbjct: 181 EDSQEKKIALTAERVWEILKHITDEECFILGMDPKFARPDW-MIVTCLPVPPLCVRPAVV 239
Query: 258 LTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGL 317
+ G DDLTHKL+DI+K NNEL+RNE +GAATHV+AENIKMLQFHVATL DNDMPGL
Sbjct: 240 MYGSARNQDDLTHKLSDILKANNELLRNEQAGAATHVLAENIKMLQFHVATLVDNDMPGL 299
Query: 318 PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 377
PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA
Sbjct: 300 PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 359
Query: 378 QNMTFPEIVTPFNMD 392
QN+TFPEIVTPFN+D
Sbjct: 360 QNLTFPEIVTPFNID 374
>gi|17530899|ref|NP_511124.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|14286163|sp|P04052.4|RPB1_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|7292659|gb|AAF48057.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|269954742|gb|ACZ54678.1| FI12846p [Drosophila melanogaster]
Length = 1887
Score = 582 bits (1500), Expect = e-164, Method: Compositional matrix adjust.
Identities = 284/392 (72%), Positives = 327/392 (83%), Gaps = 7/392 (1%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DSKAPLR VK+VQFGILSPDEIRRMSVTEGG++F ETMEGGRPKLGGLMDPRQGVIDR+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK+++
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQ 182
+V+K++GQ R+R A++YDLCKGK ICEGG++MD+ K+ + DP NKK GHGGCG YQ
Sbjct: 125 IVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDP----NKKPGHGGCGHYQ 180
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-L 240
P+IRR+GLDLTAEWKH NEDSQEKKI ++ + V + K C + + + D +
Sbjct: 181 PSIRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWM 240
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + + + G DDLTHKL+DIIK NNEL +NE+SGAA HVI ENIK
Sbjct: 241 IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIK 300
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
MLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 301 MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PDPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 361 PDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 392
>gi|308229948|gb|ADO24381.1| RNA polymerase II large subunit, partial [Drosophila cardini]
Length = 1870
Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust.
Identities = 285/389 (73%), Positives = 326/389 (83%), Gaps = 7/389 (1%)
Query: 7 KAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRC 66
KAPLR VK+VQFGILSPDEIRRMSVTEGG++F ET+EGGRPKLGGLMDPRQGVIDR+SRC
Sbjct: 1 KAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRC 60
Query: 67 QTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVL 126
QTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK++++V+
Sbjct: 61 QTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPRNPKIKEIVM 120
Query: 127 KTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQPNI 185
K+KGQ R+R A++YDLCKGK ICEGG++MD+ KD + DP NKK GHGGCG YQP+I
Sbjct: 121 KSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQVDP----NKKPGHGGCGHYQPSI 176
Query: 186 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAE 243
RR+GLDLTAEWKHVNEDSQEKKI ++ + V + K C + + + D +
Sbjct: 177 RRTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKHITDEECFILGMDPKYARPDWMIVT 236
Query: 244 WKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
V + + + G DDLTHKLADIIK NNEL +NE+SGAA HVI ENIKMLQ
Sbjct: 237 VLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQ 296
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
FHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP
Sbjct: 297 FHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 356
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
NLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 357 NLRIDQVGVPRSIAQNLTFPELVTPFNID 385
>gi|162951789|gb|ABY21756.1| RE30267p [Drosophila melanogaster]
Length = 1887
Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust.
Identities = 284/392 (72%), Positives = 327/392 (83%), Gaps = 7/392 (1%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DSKAPLR VK+VQFGILSPDEIRRMSVTEGG++F ETMEGGRPKLGGLMDPRQGVIDR+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK+++
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQ 182
+V+K++GQ R+R A++YDLCKGK ICEGG++MD+ K+ + DP NKK GHGGCG YQ
Sbjct: 125 IVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDP----NKKPGHGGCGHYQ 180
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-L 240
P+IRR+GLDLTAEWKH NEDSQEKKI ++ + V + K C + + + D +
Sbjct: 181 PSIRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWM 240
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + + + G DDLTHKL+DIIK NNEL +NE+SGAA HVI ENIK
Sbjct: 241 IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIK 300
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
MLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 301 MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PDPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 361 PDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 392
>gi|158332|gb|AAA28868.1| RNA polymerase II [Drosophila melanogaster]
Length = 1896
Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust.
Identities = 284/392 (72%), Positives = 327/392 (83%), Gaps = 7/392 (1%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DSKAPLR VK+VQFGILSPDEIRRMSVTEGG++F ETMEGGRPKLGGLMDPRQGVIDR+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK+++
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQ 182
+V+K++GQ R+R A++YDLCKGK ICEGG++MD+ K+ + DP NKK GHGGCG YQ
Sbjct: 125 IVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDP----NKKPGHGGCGHYQ 180
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-L 240
P+IRR+GLDLTAEWKH NEDSQEKKI ++ + V + K C + + + D +
Sbjct: 181 PSIRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWM 240
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + + + G DDLTHKL+DIIK NNEL +NE+SGAA HVI ENIK
Sbjct: 241 IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIK 300
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
MLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 301 MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PDPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 361 PDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 392
>gi|195355215|ref|XP_002044088.1| GM13065 [Drosophila sechellia]
gi|194129357|gb|EDW51400.1| GM13065 [Drosophila sechellia]
Length = 1887
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 284/392 (72%), Positives = 327/392 (83%), Gaps = 7/392 (1%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DSKAPLR VK+VQFGILSPDEIRRMSVTEGG++F ETMEGGRPKLGGLMDPRQGVIDR+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK+++
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQ 182
+V+K++GQ R+R A++YDLCKGK ICEGG++MD+ K+ + DP NKK GHGGCG YQ
Sbjct: 125 IVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDP----NKKPGHGGCGHYQ 180
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-L 240
P+IRR+GLDLTAEWKH NEDSQEKKI ++ + V + K C + + + D +
Sbjct: 181 PSIRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWM 240
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + + + G DDLTHKL+DIIK NNEL +NE+SGAA HVI ENIK
Sbjct: 241 IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIK 300
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
MLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 301 MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PDPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 361 PDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 392
>gi|308229952|gb|ADO24383.1| RNA polymerase II large subunit, partial [Drosophila guttifera]
Length = 1872
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 285/389 (73%), Positives = 326/389 (83%), Gaps = 7/389 (1%)
Query: 7 KAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRC 66
KAPLR VK+VQFGILSPDEIRRMSVTEGG++F ET+EGGRPKLGGLMDPRQGVIDR+SRC
Sbjct: 1 KAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRC 60
Query: 67 QTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVL 126
QTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK++++V+
Sbjct: 61 QTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVV 120
Query: 127 KTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQPNI 185
K+KGQ R+R A++YDLCKGK ICEGG++MD+ KD + DP NKK GHGGCG YQP+I
Sbjct: 121 KSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQVDP----NKKPGHGGCGHYQPSI 176
Query: 186 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAE 243
RR+GLDLTAEWKHVNEDSQEKKI ++ + V + K C + + + D +
Sbjct: 177 RRTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKHITDEECFILGMDPKYARPDWMIVT 236
Query: 244 WKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
V + + + G DDLTHKLADIIK NNEL +NE+SGAA HVI ENIKMLQ
Sbjct: 237 VLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQ 296
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
FHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP
Sbjct: 297 FHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 356
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
NLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 357 NLRIDQVGVPRSIAQNLTFPELVTPFNID 385
>gi|170062578|ref|XP_001866731.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
gi|167880465|gb|EDS43848.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
Length = 1874
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 283/392 (72%), Positives = 327/392 (83%), Gaps = 9/392 (2%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DSKAP+R VK+VQFGILSPDEIRRMSVTEGGI++ ETMEGGRPKL GLMDPRQGVI+R+S
Sbjct: 4 DSKAPIRTVKRVQFGILSPDEIRRMSVTEGGIQYAETMEGGRPKLCGLMDPRQGVIERTS 63
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHIDLAKPVFH+GFVTKTIKILRCVCFYCSK+LVSPS+PK++++
Sbjct: 64 RCQTCAGNMTECPGHFGHIDLAKPVFHIGFVTKTIKILRCVCFYCSKMLVSPSNPKIKEI 123
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGA-EDPNSLQNKKQGHGGCGRYQP 183
V+K+KGQ R+R A++YDLCKGK ICEGG++MDI KDGA DP NKKQGHGGCG YQP
Sbjct: 124 VIKSKGQPRKRLAYVYDLCKGKKICEGGEDMDITKDGAPPDP----NKKQGHGGCGHYQP 179
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLDL 240
++RR+GLD+ AEWK VNEDSQEKKI +T + V + K C P R +
Sbjct: 180 SLRRTGLDVIAEWKTVNEDSQEKKIAVTAERVWEILKHITDEECYVLGMDPKFARPDWMI 239
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + + + G DDLTHKL+DI+K NNEL +NE++GAA HVIAENIK
Sbjct: 240 ITVLP-VPPLAVRPAVVMFGATKNQDDLTHKLSDIVKSNNELKKNEATGAAAHVIAENIK 298
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
MLQFHVATL DNDMPG+P+AMQKSGKPLK++K+RLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 299 MLQFHVATLVDNDMPGMPKAMQKSGKPLKSVKSRLKGKEGRIRGNLMGKRVDFSARTVIT 358
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PDPNLRIDQVGVPRS+AQNMTFPE+VTPFN+D
Sbjct: 359 PDPNLRIDQVGVPRSVAQNMTFPELVTPFNID 390
>gi|324120530|dbj|BAJ78656.1| RNA polymerase II largest subunit [Aposthonia japonica]
Length = 1697
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 284/375 (75%), Positives = 314/375 (83%), Gaps = 7/375 (1%)
Query: 21 LSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHF 80
+SPDEIRRMSVTEGGI+FPETMEGGRPKLGGLMDPRQGVIDR+SRCQTCAGN TECPGHF
Sbjct: 1 ISPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTCAGNQTECPGHF 60
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIY 140
GHIDLAKPVFH+GF+TKTIKILRCVCFYCSKLLVSP+HPK++++V+K+KGQ R+R F+Y
Sbjct: 61 GHIDLAKPVFHIGFLTKTIKILRCVCFYCSKLLVSPTHPKIKEIVMKSKGQPRKRLTFVY 120
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
DLCKGKNICEGGDEMDINK+ +D Q +K GHGGCGRYQPNIRR+GLDLTAEWKHVN
Sbjct: 121 DLCKGKNICEGGDEMDINKENIDDQ---QPRKAGHGGCGRYQPNIRRAGLDLTAEWKHVN 177
Query: 201 EDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLDLTAEWKHVNEDSQEKKIP 257
EDSQEKKI L+ + V + K C P R + V S +
Sbjct: 178 EDSQEKKINLSAERVWEILKHITDEECFILGMDPKFARPDWMIVTVLP-VPPLSVRPAVV 236
Query: 258 LTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGL 317
+ G DDLTHKL+DIIK NNEL+RNE +GAA HVIAENIKMLQFHVATL DNDMPGL
Sbjct: 237 MYGSARNQDDLTHKLSDIIKSNNELVRNEQAGAAAHVIAENIKMLQFHVATLVDNDMPGL 296
Query: 318 PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 377
PRAMQKSGKPLKAIK+RLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA
Sbjct: 297 PRAMQKSGKPLKAIKSRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 356
Query: 378 QNMTFPEIVTPFNMD 392
QN+TFPEIVTPFN+D
Sbjct: 357 QNLTFPEIVTPFNID 371
>gi|324120510|dbj|BAJ78646.1| RNA polymerase II largest subunit [Pedetontus unimaculatus]
Length = 1549
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 280/374 (74%), Positives = 313/374 (83%), Gaps = 2/374 (0%)
Query: 21 LSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHF 80
LSPDEIRRMSVTEGGI+F E EGGRPKLGGLMDPRQGVIDR SRCQTCAGNMTECPGHF
Sbjct: 1 LSPDEIRRMSVTEGGIRFSEIYEGGRPKLGGLMDPRQGVIDRQSRCQTCAGNMTECPGHF 60
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIY 140
GHIDL KPVFH+GF+TKTIKILRCVCFYCSK+LV+P++PK++++V+K+KGQ R+R A +Y
Sbjct: 61 GHIDLGKPVFHIGFITKTIKILRCVCFYCSKMLVNPTNPKIKEIVMKSKGQPRKRLAHVY 120
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
DLCKGKNICEGGDEMDI KD +DP+ +Q KKQGHGGCGRYQPNIRR LDLTAEWKHVN
Sbjct: 121 DLCKGKNICEGGDEMDIQKDNPDDPSGMQGKKQGHGGCGRYQPNIRRIALDLTAEWKHVN 180
Query: 201 EDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDSQEKKIPL 258
EDSQEKKI LT + V + K C + + + D + V + + +
Sbjct: 181 EDSQEKKIVLTAERVWEIFKHISDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVM 240
Query: 259 TGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
G DDLTHKLADIIK NNEL+RNE +GAA HVIAENIKMLQFHVATL DNDMPGLP
Sbjct: 241 YGSARNQDDLTHKLADIIKANNELLRNEQAGAAAHVIAENIKMLQFHVATLVDNDMPGLP 300
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
RAMQKSG+PLKA+KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ
Sbjct: 301 RAMQKSGRPLKALKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 360
Query: 379 NMTFPEIVTPFNMD 392
N+TFPEIVTPFN+D
Sbjct: 361 NLTFPEIVTPFNID 374
>gi|324120520|dbj|BAJ78651.1| RNA polymerase II largest subunit [Epiophlebia superstes]
Length = 1922
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 281/375 (74%), Positives = 316/375 (84%), Gaps = 3/375 (0%)
Query: 21 LSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHF 80
+SPDEIRRMSVTEGGI+F ETMEGGRPKLGGLMDPRQGV+DR SRCQTCAGNMTECPGHF
Sbjct: 1 ISPDEIRRMSVTEGGIRFSETMEGGRPKLGGLMDPRQGVMDRHSRCQTCAGNMTECPGHF 60
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIY 140
GHIDLAKPVFH+GF+TKTIKILRCVCFYCSKLLVSP++PK++++V+K+KGQ R+R F+Y
Sbjct: 61 GHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPNNPKIKEIVMKSKGQPRKRLTFVY 120
Query: 141 DLCKGKNICEGGDEMDINKDGAEDP-NSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHV 199
DLCKGKNICEGGDEMDI KDGA+DP QN+K GHGGCGRYQP+I+R+GLDLTAEWKHV
Sbjct: 121 DLCKGKNICEGGDEMDIQKDGADDPGGGAQNRKAGHGGCGRYQPSIQRTGLDLTAEWKHV 180
Query: 200 NEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDSQEKKIP 257
NEDSQEKKI L+ + V + K C + + + D + V +
Sbjct: 181 NEDSQEKKISLSAERVWEIFKHISDEECFIMGMDPKYARPDWMIVTVLPVPPLPVRPAVV 240
Query: 258 LTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGL 317
+ G DDLTHKLADIIK NNEL+RNE +GAA HV++ENIKMLQFH ATL DNDMPGL
Sbjct: 241 MYGSARNQDDLTHKLADIIKSNNELLRNEQAGAAAHVLSENIKMLQFHAATLVDNDMPGL 300
Query: 318 PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 377
PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA
Sbjct: 301 PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 360
Query: 378 QNMTFPEIVTPFNMD 392
QN+TFPEIVTPFN+D
Sbjct: 361 QNLTFPEIVTPFNID 375
>gi|324120590|dbj|BAJ78686.1| RNA polymerase II largest subunit [Panorpa takenouchii]
Length = 1725
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 284/396 (71%), Positives = 326/396 (82%), Gaps = 9/396 (2%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAPLR VKKVQFGIL+PDEIRRMSVTEGG++F ETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MASSDSKAPLRTVKKVQFGILAPDEIRRMSVTEGGVRFSETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGNMTECPGHFGHIDLAKPVFH+GFVTKT+KILRCVCF CSKLLVSP +PK
Sbjct: 61 DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFVTKTLKILRCVCFNCSKLLVSPQNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGA-EDPNSLQNKKQGHGGCG 179
+++VV+K+KGQ R+R A++YDLCKGK ICEGG++MD+ KDG DP +KK GHGGCG
Sbjct: 121 IKEVVVKSKGQPRKRLAYVYDLCKGKKICEGGEDMDMTKDGIPTDP----SKKTGHGGCG 176
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRS 236
YQP I+R+GLD+TAEWKHVNED+QEKKI ++ + V + K C P R
Sbjct: 177 HYQPQIKRTGLDITAEWKHVNEDTQEKKIVVSAERVWEILKHITDEECFVLGMDPKFARP 236
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ V + + + G DDLTHKL+DIIK NNEL RNE++GAA HVI
Sbjct: 237 DW-MIITVMPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELKRNEAAGAAAHVIT 295
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
ENIKMLQFHVAT DNDMPG+PRAMQKSGKPLKA+K+RLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 296 ENIKMLQFHVATFVDNDMPGMPRAMQKSGKPLKAVKSRLKGKEGRIRGNLMGKRVDFSAR 355
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVITPDPNLRIDQVGVPRSIAQN+TFPE+VTPFN++
Sbjct: 356 TVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNLE 391
>gi|324120512|dbj|BAJ78647.1| RNA polymerase II largest subunit [Petrobiellus takunagae]
Length = 1882
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 279/374 (74%), Positives = 313/374 (83%), Gaps = 2/374 (0%)
Query: 21 LSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHF 80
LSPDEIRRMSVTEGGI+F E EGGRPKLGGLMDPRQGVIDR SRCQTCAGNMTECPGHF
Sbjct: 1 LSPDEIRRMSVTEGGIRFSEIYEGGRPKLGGLMDPRQGVIDRQSRCQTCAGNMTECPGHF 60
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIY 140
GHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP++PK+++VV+K+KGQ R+R A +Y
Sbjct: 61 GHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPTNPKIKEVVMKSKGQPRKRLAHVY 120
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
DLCKGKNICEGGDE+D+ KD +DP+ +QNKKQGHGGCGRYQPNIRR LDLTAEWKHVN
Sbjct: 121 DLCKGKNICEGGDELDLGKDIPDDPSGMQNKKQGHGGCGRYQPNIRRIALDLTAEWKHVN 180
Query: 201 EDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDSQEKKIPL 258
EDSQEKKI LT + V + K C + + + D + V + + +
Sbjct: 181 EDSQEKKIVLTAERVWEIFKHISDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVM 240
Query: 259 TGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
G DDLTHKLADIIK NNEL+RNE +G A HVIAEN+KMLQFH ATL DNDMPGLP
Sbjct: 241 YGSARNQDDLTHKLADIIKANNELLRNEQAGGAAHVIAENVKMLQFHAATLVDNDMPGLP 300
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
RAMQKSG+PLKA+KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ
Sbjct: 301 RAMQKSGRPLKALKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 360
Query: 379 NMTFPEIVTPFNMD 392
N+TFPEIVTPFN+D
Sbjct: 361 NLTFPEIVTPFNID 374
>gi|324120514|dbj|BAJ78648.1| RNA polymerase II largest subunit [Nipponatelura sp. 66-1]
Length = 1718
Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust.
Identities = 279/375 (74%), Positives = 317/375 (84%), Gaps = 5/375 (1%)
Query: 21 LSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHF 80
+SPDEIRRMSV+EGGI++PETMEGGRPKLGGLMDPRQGV+DR SRCQTCAGNMTECPGHF
Sbjct: 1 ISPDEIRRMSVSEGGIRYPETMEGGRPKLGGLMDPRQGVMDRHSRCQTCAGNMTECPGHF 60
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIY 140
GHIDLAKPVFHVGF+TK IK+LRCVCFYCSKLLVSPS+PK++++V+K+KGQ R+R AF+Y
Sbjct: 61 GHIDLAKPVFHVGFLTKVIKVLRCVCFYCSKLLVSPSNPKIKEIVMKSKGQPRKRLAFVY 120
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
DLCKGKNICEGGDEMD++KD +DP S QN+K GHGGCGRYQP+IRR+GLD+TAEWKH+N
Sbjct: 121 DLCKGKNICEGGDEMDLHKDMPDDP-SQQNRKAGHGGCGRYQPSIRRAGLDMTAEWKHIN 179
Query: 201 EDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLDLTAEWKHVNEDSQEKKIP 257
EDSQEKKI L+ + V + K+ C P R + V +
Sbjct: 180 EDSQEKKISLSAERVWEIFKQISEEECFILGMDPKFARPDW-MICTVLPVPPLPVRPAVV 238
Query: 258 LTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGL 317
+ G DDLTHKL+DIIK NNEL+RNE +GAA HVIAENIKMLQFHVATL DNDMPGL
Sbjct: 239 MYGSARNQDDLTHKLSDIIKSNNELMRNEQAGAAAHVIAENIKMLQFHVATLVDNDMPGL 298
Query: 318 PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 377
PRAMQKSGKPLKA+K+RLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA
Sbjct: 299 PRAMQKSGKPLKALKSRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 358
Query: 378 QNMTFPEIVTPFNMD 392
QN+TFPEIVTPFN+D
Sbjct: 359 QNLTFPEIVTPFNID 373
>gi|195446609|ref|XP_002070845.1| GK25468 [Drosophila willistoni]
gi|194166930|gb|EDW81831.1| GK25468 [Drosophila willistoni]
Length = 1890
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 283/392 (72%), Positives = 325/392 (82%), Gaps = 7/392 (1%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DSKAPLR VK+VQFGILSPDEIRRMSVTEGG++F ETMEGGRPKLGGLMDPRQGVIDR+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK+++
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQ 182
+V+K+KGQ R+R A++YDLCKGK ICEGG++MD+ K+ + DP NKK GHGGCG +Q
Sbjct: 125 IVMKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDP----NKKPGHGGCGHFQ 180
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-L 240
P+IRR+GLDLTAEWK V E SQEKKI ++ + V + K C + + + D +
Sbjct: 181 PSIRRTGLDLTAEWKQVAEASQEKKIIVSAERVWEILKHITDEECFILGMDPKYARPDWM 240
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + + + G DDLTHKLADIIK NNEL +NE+SGAA HVI ENIK
Sbjct: 241 IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENIK 300
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
MLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 301 MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PDPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 361 PDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 392
>gi|195566227|ref|XP_002105705.1| GD15986 [Drosophila simulans]
gi|194204074|gb|EDX17650.1| GD15986 [Drosophila simulans]
Length = 1150
Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust.
Identities = 284/392 (72%), Positives = 327/392 (83%), Gaps = 7/392 (1%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DSKAPLR VK+VQFGILSPDEIRRMSVTEGG++F ETMEGGRPKLGGLMDPRQGVIDR+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK+++
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQ 182
+V+K++GQ R+R A++YDLCKGK ICEGG++MD+ K+ + DP NKK GHGGCG YQ
Sbjct: 125 IVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDP----NKKPGHGGCGHYQ 180
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-L 240
P+IRR+GLDLTAEWKH NEDSQEKKI ++ + V + K C + + + D +
Sbjct: 181 PSIRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWM 240
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + + + G DDLTHKL+DIIK NNEL +NE+SGAA HVI ENIK
Sbjct: 241 IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIK 300
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
MLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 301 MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PDPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 361 PDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 392
>gi|241301792|ref|XP_002407502.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
gi|215497181|gb|EEC06675.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
Length = 1937
Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust.
Identities = 284/399 (71%), Positives = 327/399 (81%), Gaps = 11/399 (2%)
Query: 1 MAMADSKAPLRCVKKVQFGILS-PDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGV 59
+ +DSKA LR VK+VQFGILS PDEIRRMSVT+GGIK+PE EGGRPKLGGLMDPRQGV
Sbjct: 6 IVTSDSKATLREVKRVQFGILSKPDEIRRMSVTDGGIKYPEIYEGGRPKLGGLMDPRQGV 65
Query: 60 IDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHP 119
IDR+SRCQTCAG+MTECPGHFGHI+LAKPVFH GF+TKTIKILRCVCFYCSKLLVSP++P
Sbjct: 66 IDRTSRCQTCAGSMTECPGHFGHIELAKPVFHCGFLTKTIKILRCVCFYCSKLLVSPNNP 125
Query: 120 KVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMD----INKDGAEDPNSLQNKKQGH 175
K++++V KT+GQ R++ +F+YDLCKGKNICEGGDE+D + GAE+ KKQGH
Sbjct: 126 KIKEIVAKTRGQPRKQLSFVYDLCKGKNICEGGDEIDTKMGVENQGAEE----AAKKQGH 181
Query: 176 GGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIR 234
GGCGRYQP+IRRSGLDLTAEWKHVNEDSQEKK+ LT + V + ++ C + R
Sbjct: 182 GGCGRYQPSIRRSGLDLTAEWKHVNEDSQEKKVVLTAERVWEIFRQVSEEECQILGMDPR 241
Query: 235 RSGLD-LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATH 293
+ D + V + + + G DDLTHKLADI+K NNELIRNE SGAA H
Sbjct: 242 FTKPDWMLITVLPVPPLAVRPAVVMFGSARNQDDLTHKLADIVKANNELIRNEQSGAAAH 301
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
+IAE +KMLQFHVATL DN+MPGLPRAMQKSG+PLK+IK RLK KEGRIRGNLMGKRVDF
Sbjct: 302 IIAETLKMLQFHVATLVDNEMPGLPRAMQKSGRPLKSIKQRLKSKEGRIRGNLMGKRVDF 361
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
SARTVITPDPNLRID+VGVPRSIAQN+TFPEIVTPFNMD
Sbjct: 362 SARTVITPDPNLRIDEVGVPRSIAQNLTFPEIVTPFNMD 400
>gi|324120546|dbj|BAJ78664.1| RNA polymerase II largest subunit [Forficula hiromasai]
Length = 1744
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 288/396 (72%), Positives = 325/396 (82%), Gaps = 8/396 (2%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVT-EGGIKFPETMEGGRPKLGGLMDPRQGV 59
MA +DSKAP+R VK+VQFGILSPDE+RRMSVT EGGI+F ET EGGRPKLGGLMDPRQGV
Sbjct: 1 MAASDSKAPIRTVKRVQFGILSPDEVRRMSVTTEGGIRFSETYEGGRPKLGGLMDPRQGV 60
Query: 60 IDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHP 119
+DR +RCQTCAGN ECPGHFGHI+LAKPVFH+GF+ K IKILRCVCFYCSKLLVSP++P
Sbjct: 61 MDRITRCQTCAGNQVECPGHFGHIELAKPVFHIGFLVKAIKILRCVCFYCSKLLVSPTNP 120
Query: 120 KVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCG 179
K+++VV+KTKGQ R+R ++YDLCKGKNICEGGDE+D+ K+ E+ + + KK GHGGCG
Sbjct: 121 KIKEVVMKTKGQPRKRLVYVYDLCKGKNICEGGDEIDMPKENQEEALA-RGKKVGHGGCG 179
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGC---GRYQPNIRR 235
RYQP+IRRSGLDLTAEWKHVNEDSQEKKI LT + V + K C G R
Sbjct: 180 RYQPSIRRSGLDLTAEWKHVNEDSQEKKIVLTAQRVWEIFKHITDEECFILGMDPKFARP 239
Query: 236 SGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVI 295
+ LT V + + + G DDLTHKL+DIIK NNEL NE +G ATHV+
Sbjct: 240 DWMILTV--LPVPPLAVRPAVVMYGSARNQDDLTHKLSDIIKANNELQHNEQAGGATHVL 297
Query: 296 AENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 355
AENIK+LQFHVATL DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA
Sbjct: 298 AENIKLLQFHVATLIDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 357
Query: 356 RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN+
Sbjct: 358 RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNL 393
>gi|324120580|dbj|BAJ78681.1| RNA polymerase II largest subunit [Stichotrema asahinai]
Length = 1696
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 281/390 (72%), Positives = 319/390 (81%), Gaps = 8/390 (2%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DSKAP+R VKKVQFGILSPD IR MSVTEGGI+FPETME GRPK+ GLMDPRQGV DR+S
Sbjct: 4 DSKAPVRTVKKVQFGILSPDAIRGMSVTEGGIRFPETMEAGRPKINGLMDPRQGVNDRNS 63
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHIDL KPVFH+GF++KTIK+LRCVCFYCSKLLVSP HPK++++
Sbjct: 64 RCQTCAGNMTECPGHFGHIDLVKPVFHIGFLSKTIKVLRCVCFYCSKLLVSPMHPKIKEI 123
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPN 184
V+KTKGQ R+R ++YDLCK K ICEGGDEMDINK+ +++++ K+GHGGCGRYQP
Sbjct: 124 VIKTKGQPRKRLLYVYDLCKSKTICEGGDEMDINKES----DTIKSGKKGHGGCGRYQPV 179
Query: 185 IRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGR--YQPNIRRSGLDLT 241
IRRSGLDL+AEWKHVNE+SQEKKI LT + + K C P R +
Sbjct: 180 IRRSGLDLSAEWKHVNEESQEKKISLTAERAWEIMKHITDEECYIMGMDPKFARPDWMIV 239
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
+ V S + + G DDLTHKLADIIK NNEL RNE+SGAA HV+AENIKM
Sbjct: 240 SAIP-VPPLSVRPAVVMYGSTRNQDDLTHKLADIIKANNELQRNETSGAAVHVLAENIKM 298
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+HVAT DND+PGLP+AMQKSGKPLKA+KARLKGKEGRIRGNLMGKRVDFSARTVITP
Sbjct: 299 LQYHVATFIDNDIPGLPKAMQKSGKPLKALKARLKGKEGRIRGNLMGKRVDFSARTVITP 358
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DPNLRIDQVGVPRSIAQN+TFPEIVTPFN
Sbjct: 359 DPNLRIDQVGVPRSIAQNLTFPEIVTPFNF 388
>gi|312375441|gb|EFR22815.1| hypothetical protein AND_14157 [Anopheles darlingi]
Length = 1880
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 281/393 (71%), Positives = 326/393 (82%), Gaps = 9/393 (2%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
+DSKAPLR VK+VQFGILSPDEIRRMSVTEGGI+F ETMEGGRPKL GLMDPRQGVI+R+
Sbjct: 3 SDSKAPLRTVKRVQFGILSPDEIRRMSVTEGGIQFAETMEGGRPKLCGLMDPRQGVIERT 62
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP++PK+++
Sbjct: 63 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPTNPKIKE 122
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKD-GAEDPNSLQNKKQGHGGCGRYQ 182
+V+K+KGQ R+R A++YDLCKGK ICEGG++MD+ KD G DP +KKQGHGGCG YQ
Sbjct: 123 IVMKSKGQPRKRLAYVYDLCKGKKICEGGEDMDLTKDGGVADP----SKKQGHGGCGHYQ 178
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P+IRR+GLDL AEWK VN+++QEKK+ ++ + V + K C P R
Sbjct: 179 PSIRRTGLDLMAEWKEVNDENQEKKMQVSAERVYEILKHITDEECYVLGMDPKFARPDWM 238
Query: 240 LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENI 299
+ V + + + G DDLTHKL+DIIK NNEL +NE +GAA HVIAENI
Sbjct: 239 IITVLP-VPPLAVRPAVVMFGATKNQDDLTHKLSDIIKANNELKKNEQTGAAAHVIAENI 297
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
KMLQFHVATL DNDMPG+P+AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI
Sbjct: 298 KMLQFHVATLVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 357
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TPDPNLRIDQVGVPRS+AQNMTFPE+VTPFN+D
Sbjct: 358 TPDPNLRIDQVGVPRSVAQNMTFPELVTPFNID 390
>gi|324120568|dbj|BAJ78675.1| RNA polymerase II largest subunit [Metylophorus sp. E-43]
Length = 1792
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 287/396 (72%), Positives = 327/396 (82%), Gaps = 5/396 (1%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAPLR VK+VQFGILSPDEIRRMSVTEGGIK+PET EGGRPK+GGLMDPRQGV+
Sbjct: 1 MAASDSKAPLRTVKRVQFGILSPDEIRRMSVTEGGIKYPETYEGGRPKIGGLMDPRQGVM 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR SRCQTCAGNM+ECPGHFGHIDLAKPV+HVGF+TKTIKILRCVCF+CSK+LVSPS+ K
Sbjct: 61 DRMSRCQTCAGNMSECPGHFGHIDLAKPVYHVGFLTKTIKILRCVCFFCSKMLVSPSNAK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDP-NSLQNKKQGHGGCG 179
+++++ K++GQ R+R F+YDLCKGKNICEGGDEMDI K+ ++P ++KK GHGGCG
Sbjct: 121 IKEIITKSRGQPRKRLTFVYDLCKGKNICEGGDEMDITKENPDNPGGGGKDKKPGHGGCG 180
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRS 236
RYQPNIRR+GLDLTAEWKH NED+QEKKI L+ + V + K C P R
Sbjct: 181 RYQPNIRRAGLDLTAEWKHTNEDNQEKKISLSAERVWEILKHITDEECLILGMDPKFARP 240
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
L V S + + G DDLTHKLADIIK NNEL RNE +GAA H+I+
Sbjct: 241 DWMLVTVLP-VPPLSVRPAVVMYGSARNQDDLTHKLADIIKSNNELTRNEQAGAAAHIIS 299
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
EN+KMLQFHVAT DNDMPGLPRAMQKSGKPLKA+KARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 300 ENMKMLQFHVATFIDNDMPGLPRAMQKSGKPLKAVKARLKGKEGRIRGNLMGKRVDFSAR 359
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVITPDPNLRIDQVGVPRSIAQN+TFPEI+TPFN+D
Sbjct: 360 TVITPDPNLRIDQVGVPRSIAQNLTFPEIITPFNID 395
>gi|324120508|dbj|BAJ78645.1| RNA polymerase II largest subunit [Lepidocampa weberi]
Length = 1558
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 278/392 (70%), Positives = 320/392 (81%), Gaps = 6/392 (1%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
+DSKAP+R VKKVQFGILSPDEIRRMS TEGGI++PE MEGGRPKLGGLMDPRQGV+DR
Sbjct: 5 SDSKAPIRQVKKVQFGILSPDEIRRMSATEGGIRYPEVMEGGRPKLGGLMDPRQGVVDRL 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNMTECPGHFGHIDLAKPV+H GF+TK +K LRCVCFYCSKLLVSP+ P++++
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVYHSGFLTKIVKTLRCVCFYCSKLLVSPTTPRIKE 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
++ K+KGQ R+R A +YDLCKGK ICEGGDEMD+ ++ +DP+ Q K+ GHGGCGRYQP
Sbjct: 125 ILQKSKGQPRKRLAAVYDLCKGKTICEGGDEMDLQRE--DDPSVQQPKRAGHGGCGRYQP 182
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLDL 240
IRR+ L+LTAEWKH+NEDSQEKKI LT + V + + C P R +
Sbjct: 183 KIRRAALELTAEWKHLNEDSQEKKIALTAERVHEIFRHISDEECYILGMDPKFARPDWMI 242
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + + G DDLTHKL+DIIK NNEL RNE +GAATH+++EN+K
Sbjct: 243 VTVLP-VPPLCVRPAVVMFGSARNQDDLTHKLSDIIKANNELKRNEETGAATHILSENVK 301
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
MLQFHVATL DNDMPGLPRAMQKSG+PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 302 MLQFHVATLVDNDMPGLPRAMQKSGRPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 361
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PDPNLRIDQVGVPRSIAQN+TFPEIVTPFN+D
Sbjct: 362 PDPNLRIDQVGVPRSIAQNLTFPEIVTPFNID 393
>gi|324120528|dbj|BAJ78655.1| RNA polymerase II largest subunit [Phraortes illepidus]
Length = 1563
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 282/375 (75%), Positives = 312/375 (83%), Gaps = 6/375 (1%)
Query: 21 LSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHF 80
+SPDEIRRMSVTEGGI+F ETMEGGRPKLGGLMDPRQGVIDR+SRCQTCAGN TEC GHF
Sbjct: 1 ISPDEIRRMSVTEGGIRFSETMEGGRPKLGGLMDPRQGVIDRNSRCQTCAGNQTECAGHF 60
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIY 140
GHI+LAKPVFHVGF+TKTIKILRCVCFYCSKLLVSP++PK+++VV+K+KGQ R+R F+Y
Sbjct: 61 GHINLAKPVFHVGFLTKTIKILRCVCFYCSKLLVSPTNPKIKEVVMKSKGQPRKRLTFVY 120
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
DLCKGKNICEGGDEMDI K+ +DPNS Q +K GHGGCGRYQP+IRR+GLDLTAEWKHVN
Sbjct: 121 DLCKGKNICEGGDEMDIQKE--DDPNSQQPRKAGHGGCGRYQPSIRRAGLDLTAEWKHVN 178
Query: 201 EDSQEKKIPLTGKGV---LLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIP 257
EDSQEKKI L+ + V L + P R + V +
Sbjct: 179 EDSQEKKISLSAERVWEILRHITDEECFILGMDPKFARPDWMIVTVLP-VPPLCVRPAVV 237
Query: 258 LTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGL 317
+ G DDLTHKLADIIK NNEL+RNE +GAA HV+A+NIKMLQFHVATL DNDMPGL
Sbjct: 238 MYGSARNQDDLTHKLADIIKSNNELVRNEQAGAAAHVVADNIKMLQFHVATLVDNDMPGL 297
Query: 318 PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 377
PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA
Sbjct: 298 PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 357
Query: 378 QNMTFPEIVTPFNMD 392
QNMTFPEIVTPFN+D
Sbjct: 358 QNMTFPEIVTPFNID 372
>gi|324120574|dbj|BAJ78678.1| RNA polymerase II largest subunit [Protohermes grandis]
Length = 1633
Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust.
Identities = 284/395 (71%), Positives = 326/395 (82%), Gaps = 7/395 (1%)
Query: 2 AMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVID 61
+ +DSKAP+R VKKVQFGILSPDEIRRMSVTEGGI++ ETMEGGRPKLGGLMDPRQGVID
Sbjct: 1 STSDSKAPIRSVKKVQFGILSPDEIRRMSVTEGGIRYAETMEGGRPKLGGLMDPRQGVID 60
Query: 62 RSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKV 121
R+SRCQTCAGNM+ECPGHFGHIDL KPVFH+GF+ KTIKILRCVCFYCSKLLVSP++PK+
Sbjct: 61 RNSRCQTCAGNMSECPGHFGHIDLCKPVFHIGFIVKTIKILRCVCFYCSKLLVSPTNPKI 120
Query: 122 RDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN-KKQGHGGCGR 180
+++V+K+KGQ R+R F+YDLCKGKNICEGGDEMDI K+ ED + ++ + HGGCGR
Sbjct: 121 KEIVMKSKGQPRKRLVFVYDLCKGKNICEGGDEMDIAKE--EDAAAGRSAARPTHGGCGR 178
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSG 237
YQP+IRR+GLDL+AEWKH+NEDSQEKKI LT + V + K C P R
Sbjct: 179 YQPSIRRTGLDLSAEWKHINEDSQEKKISLTAERVWEILKHISDEECFILGMDPKFARPD 238
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V + + G DDLTHKL+DI+K N +L RNE++GAA HVIAE
Sbjct: 239 WMIITV-LPVPPLPVRPAVVMYGSAKNQDDLTHKLSDIVKANADLARNEAAGAAAHVIAE 297
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
NIKMLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 298 NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNLRIDQVGVPRSIAQN+TFPEIVTPFN++
Sbjct: 358 VITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIE 392
>gi|321464303|gb|EFX75312.1| hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex]
Length = 1895
Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust.
Identities = 277/391 (70%), Positives = 320/391 (81%), Gaps = 4/391 (1%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
+DSKA +R VK+VQFGILSPDEIRRMSVTEGGIK+PE EGG+PKLGGLMDPRQGVIDRS
Sbjct: 6 SDSKATIRLVKRVQFGILSPDEIRRMSVTEGGIKYPEIYEGGKPKLGGLMDPRQGVIDRS 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+RCQTCAGNM ECPGHFGHIDLAKPV+H+GF+ KT+KILRCVCFYCSKLLVSP++PK+++
Sbjct: 66 ARCQTCAGNMNECPGHFGHIDLAKPVYHIGFIQKTMKILRCVCFYCSKLLVSPNNPKIKE 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+++K+KGQ R+R A +YDLCKGKNICEGGDE+DI KD ED + K GHGGCGRYQP
Sbjct: 126 ILVKSKGQPRKRMAHVYDLCKGKNICEGGDEIDIGKD--EDISKEGKKGIGHGGCGRYQP 183
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LT 241
IRR GL++T EWKHVNEDSQEKKI LT + V + K C + + + D +
Sbjct: 184 TIRRQGLEMTGEWKHVNEDSQEKKIVLTAERVWEIFKHISDEECAILGMDPKYARPDWMI 243
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + + + G DDLTHKLADI+K NNEL RNE SGAA H+IAENIKM
Sbjct: 244 VTCLPVPPLAVRPAVVMHGSARNQDDLTHKLADIVKANNELQRNEQSGAAAHIIAENIKM 303
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQFHVAT+ DND PGLPRA QKSG+P+K++KARLKGKEGRIRGNLMGKRVDFSARTVITP
Sbjct: 304 LQFHVATMVDNDSPGLPRAQQKSGRPIKSVKARLKGKEGRIRGNLMGKRVDFSARTVITP 363
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPNLRIDQVGVPRSIAQNMTFPEIVTPFN++
Sbjct: 364 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNIE 394
>gi|119112579|ref|XP_317690.3| AGAP007810-PA [Anopheles gambiae str. PEST]
gi|116123421|gb|EAA12308.3| AGAP007810-PA [Anopheles gambiae str. PEST]
Length = 1878
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 278/391 (71%), Positives = 324/391 (82%), Gaps = 8/391 (2%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
+SKAPLR VK+VQFGILSPDEIRRMSVTEGGI++ ETMEGGRPKL GLMDPRQGVI+R+S
Sbjct: 5 ESKAPLRLVKRVQFGILSPDEIRRMSVTEGGIQYAETMEGGRPKLCGLMDPRQGVIERTS 64
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK++++
Sbjct: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPQNPKIKEI 124
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPN 184
VLK+KGQ R+R A++YDLCKGK ICEGG++MD++K +P + KKQGHGGCG YQP+
Sbjct: 125 VLKSKGQPRKRLAYVYDLCKGKKICEGGEDMDMSK----EPTADGAKKQGHGGCGHYQPS 180
Query: 185 IRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLDLT 241
IRR+GLDL AEWK VN+++QEKKI ++ + V + K C P R +
Sbjct: 181 IRRTGLDLMAEWKDVNDENQEKKIQVSAERVYEILKHITDEECFVLGMDPKFARPDWMII 240
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + + + G DDLTHKL+DIIK NNEL +NE++GAA HVIAENIKM
Sbjct: 241 TVLP-VPPLAVRPAVVMFGATKNQDDLTHKLSDIIKANNELKKNEATGAAAHVIAENIKM 299
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQFHVATL DNDMPG+P+AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP
Sbjct: 300 LQFHVATLVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 359
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPNLRIDQVGVPRS+AQNMTFPE+VTPFN+D
Sbjct: 360 DPNLRIDQVGVPRSVAQNMTFPELVTPFNID 390
>gi|324120588|dbj|BAJ78685.1| RNA polymerase II largest subunit [Stenopsyche marmorata]
Length = 1754
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 287/397 (72%), Positives = 327/397 (82%), Gaps = 9/397 (2%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA DSKAPLR VK+VQFGIL+PDEIRRMSVTEGGI+FPETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MATNDSKAPLRQVKRVQFGILAPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIK+LRCVCFYCSKLLV+P++PK
Sbjct: 61 DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKVLRCVCFYCSKLLVTPTNPK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDI-NKDGAEDPNSLQNKKQGHGGCG 179
+++VV+K+KGQ R+R A++YDLCKGKNICEGG++MD+ DG E+ + GHGGCG
Sbjct: 121 IKEVVMKSKGQPRKRLAYVYDLCKGKNICEGGEDMDLGGGDGTEE--GAKKGAAGHGGCG 178
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGC---GRYQPNIRR 235
YQP+I RSGLDLTAEWKHVNEDSQEKKI ++ + V + K C G R
Sbjct: 179 HYQPSIHRSGLDLTAEWKHVNEDSQEKKIVISAERVWEILKHITDEECFILGMDPKFARP 238
Query: 236 SGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVI 295
+ +T V + + G DDLTHKL+DIIK NNELIRNE +GAA HVI
Sbjct: 239 DWMIITV--MPVPPLCVRPAVVMFGAAKNQDDLTHKLSDIIKTNNELIRNEQAGAAAHVI 296
Query: 296 AENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 355
ENIKMLQFHVAT DNDMPG+PRA+QKSGKPLKA+KARLKGKEGRIRGNLMGKRVDFSA
Sbjct: 297 QENIKMLQFHVATFVDNDMPGMPRAVQKSGKPLKAVKARLKGKEGRIRGNLMGKRVDFSA 356
Query: 356 RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
RTVITPDPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 357 RTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 393
>gi|324120526|dbj|BAJ78654.1| RNA polymerase II largest subunit [Isonychia japonica]
Length = 1530
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 276/376 (73%), Positives = 313/376 (83%), Gaps = 4/376 (1%)
Query: 21 LSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHF 80
LSPDEIRRMSVTEGGI+FPET EGGRPKLGGLMDPRQGV+DR+SRCQTCAGNMTECPGHF
Sbjct: 1 LSPDEIRRMSVTEGGIRFPETYEGGRPKLGGLMDPRQGVMDRNSRCQTCAGNMTECPGHF 60
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIY 140
GHI+LAKPVFHVGF+ +TIKILRCVCFYCSK+LVSP++PK++++V+KTKGQ R+R F+Y
Sbjct: 61 GHIELAKPVFHVGFIKQTIKILRCVCFYCSKMLVSPTNPKIKEIVMKTKGQPRKRLTFVY 120
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSL--QNKKQGHGGCGRYQPNIRRSGLDLTAEWKH 198
DLCKGKNICEGGDEMD+ KD +P+ Q+KKQGHGGCGRYQPNIRRSGLDL+AEWKH
Sbjct: 121 DLCKGKNICEGGDEMDLAKDPDRNPDDPGGQSKKQGHGGCGRYQPNIRRSGLDLSAEWKH 180
Query: 199 VNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDSQEKKI 256
NED+QEKKI L+ + V + K C + + + D + A V S +
Sbjct: 181 ANEDTQEKKIALSAERVYEIFKHISDEECFIMGMDPKYARPDWMIATVLPVPPLSVRPAV 240
Query: 257 PLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
+ G DDLTHKLADIIK NNEL RNE +GAA HV+ EN KMLQFHVATL DNDMPG
Sbjct: 241 VMYGSARNQDDLTHKLADIIKANNELARNEMAGAAAHVLCENTKMLQFHVATLVDNDMPG 300
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNL IDQVGVPRSI
Sbjct: 301 MPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLHIDQVGVPRSI 360
Query: 377 AQNMTFPEIVTPFNMD 392
AQN+TFPEIVTPFN++
Sbjct: 361 AQNLTFPEIVTPFNLE 376
>gi|308229956|gb|ADO24385.1| RNA polymerase II large subunit, partial [Drosophila phalerata]
Length = 1849
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 275/377 (72%), Positives = 315/377 (83%), Gaps = 7/377 (1%)
Query: 19 GILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPG 78
GILSPDEIRRMSVTEGG++F ET+EGGRPKLGGLMDPRQGVIDR+SRCQTCAGNMTECPG
Sbjct: 1 GILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPG 60
Query: 79 HFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAF 138
HFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK++++V+K+KGQ R+R A+
Sbjct: 61 HFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSKGQPRKRLAY 120
Query: 139 IYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK 197
+YDLCKGK ICEGG++MD+ KD + DP NKK GHGGCG YQP+IRR+GLDLTAEWK
Sbjct: 121 VYDLCKGKTICEGGEDMDLTKDNQQVDP----NKKPGHGGCGHYQPSIRRTGLDLTAEWK 176
Query: 198 HVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDSQEKK 255
HVNEDSQEKKI ++ + V + K C + + + D + V +
Sbjct: 177 HVNEDSQEKKIIVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPA 236
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+ + G DDLTHKLADIIK NNEL +NE+SGAA HVI ENIKMLQFHVATL DNDMP
Sbjct: 237 VVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMP 296
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS
Sbjct: 297 GMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 356
Query: 376 IAQNMTFPEIVTPFNMD 392
IAQN+TFPE+VTPFN+D
Sbjct: 357 IAQNLTFPELVTPFNID 373
>gi|308229946|gb|ADO24380.1| RNA polymerase II large subunit, partial [Drosophila brachynephros]
Length = 1847
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 275/377 (72%), Positives = 315/377 (83%), Gaps = 7/377 (1%)
Query: 19 GILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPG 78
GILSPDEIRRMSVTEGG++F ET+EGGRPKLGGLMDPRQGVIDR+SRCQTCAGNMTECPG
Sbjct: 1 GILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPG 60
Query: 79 HFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAF 138
HFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK++++V+K+KGQ R+R A+
Sbjct: 61 HFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSKGQPRKRLAY 120
Query: 139 IYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK 197
+YDLCKGK ICEGG++MD+ KD + DP NKK GHGGCG YQP+IRR+GLDLTAEWK
Sbjct: 121 VYDLCKGKTICEGGEDMDLTKDNQQVDP----NKKPGHGGCGHYQPSIRRTGLDLTAEWK 176
Query: 198 HVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDSQEKK 255
HVNEDSQEKKI ++ + V + K C + + + D + V +
Sbjct: 177 HVNEDSQEKKIIVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPA 236
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+ + G DDLTHKLADIIK NNEL +NE+SGAA HVI ENIKMLQFHVATL DNDMP
Sbjct: 237 VVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMP 296
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS
Sbjct: 297 GMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 356
Query: 376 IAQNMTFPEIVTPFNMD 392
IAQN+TFPE+VTPFN+D
Sbjct: 357 IAQNLTFPELVTPFNID 373
>gi|308229958|gb|ADO24386.1| RNA polymerase II large subunit, partial [Drosophila quinaria]
Length = 1847
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 275/377 (72%), Positives = 315/377 (83%), Gaps = 7/377 (1%)
Query: 19 GILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPG 78
GILSPDEIRRMSVTEGG++F ET+EGGRPKLGGLMDPRQGVIDR+SRCQTCAGNMTECPG
Sbjct: 1 GILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPG 60
Query: 79 HFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAF 138
HFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK++++V+K+KGQ R+R A+
Sbjct: 61 HFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVVKSKGQPRKRLAY 120
Query: 139 IYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK 197
+YDLCKGK ICEGG++MD+ KD + DP NKK GHGGCG YQP+IRR+GLDLTAEWK
Sbjct: 121 VYDLCKGKTICEGGEDMDLTKDNQQVDP----NKKPGHGGCGHYQPSIRRTGLDLTAEWK 176
Query: 198 HVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDSQEKK 255
HVNEDSQEKKI ++ + V + K C + + + D + V +
Sbjct: 177 HVNEDSQEKKIIVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPA 236
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+ + G DDLTHKLADIIK NNEL +NE+SGAA HVI ENIKMLQFHVATL DNDMP
Sbjct: 237 VVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMP 296
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS
Sbjct: 297 GMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 356
Query: 376 IAQNMTFPEIVTPFNMD 392
IAQN+TFPE+VTPFN+D
Sbjct: 357 IAQNLTFPELVTPFNID 373
>gi|308229942|gb|ADO24378.1| RNA polymerase II large subunit, partial [Drosophila acutilabella]
Length = 1845
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 274/377 (72%), Positives = 315/377 (83%), Gaps = 7/377 (1%)
Query: 19 GILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPG 78
G+LSPDEIRRMSVTEGG++F ET+EGGRPKLGGLMDPRQGVIDR+SRCQTCAGNMTECPG
Sbjct: 1 GMLSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPG 60
Query: 79 HFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAF 138
HFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK++++V+K+KGQ R+R A+
Sbjct: 61 HFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSKGQPRKRLAY 120
Query: 139 IYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK 197
+YDLCKGK ICEGG++MD+ KD + DP NKK GHGGCG YQP+IRR+GLDLTAEWK
Sbjct: 121 VYDLCKGKTICEGGEDMDLTKDNQQVDP----NKKPGHGGCGHYQPSIRRTGLDLTAEWK 176
Query: 198 HVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDSQEKK 255
HVNEDSQEKKI ++ + V + K C + + + D + V +
Sbjct: 177 HVNEDSQEKKIIVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPA 236
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+ + G DDLTHKLADIIK NNEL +NE+SGAA HVI ENIKMLQFHVATL DNDMP
Sbjct: 237 VVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMP 296
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS
Sbjct: 297 GMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 356
Query: 376 IAQNMTFPEIVTPFNMD 392
IAQN+TFPE+VTPFN+D
Sbjct: 357 IAQNLTFPELVTPFNID 373
>gi|308229950|gb|ADO24382.1| RNA polymerase II large subunit, partial [Drosophila falleni]
Length = 1847
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 274/377 (72%), Positives = 315/377 (83%), Gaps = 7/377 (1%)
Query: 19 GILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPG 78
G+LSPDEIRRMSVTEGG++F ET+EGGRPKLGGLMDPRQGVIDR+SRCQTCAGNMTECPG
Sbjct: 1 GMLSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPG 60
Query: 79 HFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAF 138
HFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK++++V+K+KGQ R+R A+
Sbjct: 61 HFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSKGQPRKRLAY 120
Query: 139 IYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK 197
+YDLCKGK ICEGG++MD+ KD + DP NKK GHGGCG YQP+IRR+GLDLTAEWK
Sbjct: 121 VYDLCKGKTICEGGEDMDLTKDNQQVDP----NKKPGHGGCGHYQPSIRRTGLDLTAEWK 176
Query: 198 HVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDSQEKK 255
HVNEDSQEKKI ++ + V + K C + + + D + V +
Sbjct: 177 HVNEDSQEKKIIVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPA 236
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+ + G DDLTHKLADIIK NNEL +NE+SGAA HVI ENIKMLQFHVATL DNDMP
Sbjct: 237 VVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMP 296
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS
Sbjct: 297 GMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 356
Query: 376 IAQNMTFPEIVTPFNMD 392
IAQN+TFPE+VTPFN+D
Sbjct: 357 IAQNLTFPELVTPFNID 373
>gi|308229944|gb|ADO24379.1| RNA polymerase II large subunit, partial [Drosophila angularis]
Length = 1847
Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust.
Identities = 273/377 (72%), Positives = 315/377 (83%), Gaps = 7/377 (1%)
Query: 19 GILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPG 78
G+LSPDEIRRMSVTEGG++F ET+EGGRPKLGGLMDPRQGVIDR+SRCQTCAGNMTECPG
Sbjct: 1 GMLSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPG 60
Query: 79 HFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAF 138
HFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK++++V+K+KGQ R+R A+
Sbjct: 61 HFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSKGQPRKRLAY 120
Query: 139 IYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK 197
+YDLCKGK ICEGG++MD+ KD + DP NKK GHGGCG YQP+IRR+GLDLTAEWK
Sbjct: 121 VYDLCKGKTICEGGEDMDLTKDNQQVDP----NKKPGHGGCGHYQPSIRRTGLDLTAEWK 176
Query: 198 HVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDSQEKK 255
HVNED+QEKKI ++ + V + K C + + + D + V +
Sbjct: 177 HVNEDTQEKKIIVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPA 236
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+ + G DDLTHKLADIIK NNEL +NE+SGAA HVI ENIKMLQFHVATL DNDMP
Sbjct: 237 VVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMP 296
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS
Sbjct: 297 GMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 356
Query: 376 IAQNMTFPEIVTPFNMD 392
IAQN+TFPE+VTPFN+D
Sbjct: 357 IAQNLTFPELVTPFNID 373
>gi|158321|gb|AAA28863.1| large subunit of RNA polymerase II, partial [Drosophila
melanogaster]
Length = 471
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 279/392 (71%), Positives = 322/392 (82%), Gaps = 8/392 (2%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DSKAPLR VK+VQFGILSPDEIRRMSVTEGG++F ETMEGGRPKLGGLMDPRQGVIDR+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK+++
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQ 182
+V+K++GQ R+R A++YDLCKGK ICEGG++MD+ K+ + DP NKK GHGGCG YQ
Sbjct: 125 IVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDP----NKKPGHGGCGHYQ 180
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-L 240
P+IRR+GLDLTAEWKH NEDSQEKKI ++ + V + K C + + + D +
Sbjct: 181 PSIRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWM 240
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + + + G DDLTHKL+DIIK NNEL +NE+SGAA HVI ENIK
Sbjct: 241 IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIK 300
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
MLQFHVATL DNDMPG+P K GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 301 MLQFHVATLVDNDMPGMP-GYAKVGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 359
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PDPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 360 PDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 391
>gi|326672374|ref|XP_003199653.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Danio
rerio]
Length = 1921
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 274/400 (68%), Positives = 322/400 (80%), Gaps = 20/400 (5%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
+DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+RS
Sbjct: 7 SDSACPLRLIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERS 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+TK +K+LRCVCF+CSKLLV ++PK++D
Sbjct: 67 GRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDANNPKIKD 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQ-NKKQGHGGCGRYQ 182
++ K+KGQ R+R +YDLCKGKNICEGG+EMD NK G E P S K++GHGGCGRYQ
Sbjct: 127 ILTKSKGQPRKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPESEDITKEKGHGGCGRYQ 185
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD- 239
P IRRSGL+L AEWKHVNEDSQEKKI LL+ ++ H R + +I G+D
Sbjct: 186 PRIRRSGLELYAEWKHVNEDSQEKKI-------LLSPERVHEIFKRIADEEDIIL-GMDP 237
Query: 240 --LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAAT 292
EW V + + + G DDLTHKLADI+K NN+L RNE SGAA
Sbjct: 238 KYARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLKRNEQSGAAA 297
Query: 293 HVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 352
HVIAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK+IK RLKGKEGR+RGNLMGKRVD
Sbjct: 298 HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVD 357
Query: 353 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
FSARTVITPDPNL+IDQVGVPRSIA NMTFPEIVTPFN+D
Sbjct: 358 FSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNID 397
>gi|68370162|ref|XP_682682.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Danio rerio]
Length = 1972
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 274/400 (68%), Positives = 322/400 (80%), Gaps = 20/400 (5%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
+DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+RS
Sbjct: 7 SDSACPLRLIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERS 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+TK +K+LRCVCF+CSKLLV ++PK++D
Sbjct: 67 GRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDANNPKIKD 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQ-NKKQGHGGCGRYQ 182
++ K+KGQ R+R +YDLCKGKNICEGG+EMD NK G E P S K++GHGGCGRYQ
Sbjct: 127 ILTKSKGQPRKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPESEDITKEKGHGGCGRYQ 185
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD- 239
P IRRSGL+L AEWKHVNEDSQEKKI LL+ ++ H R + +I G+D
Sbjct: 186 PRIRRSGLELYAEWKHVNEDSQEKKI-------LLSPERVHEIFKRIADEEDIIL-GMDP 237
Query: 240 --LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAAT 292
EW V + + + G DDLTHKLADI+K NN+L RNE SGAA
Sbjct: 238 KYARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLKRNEQSGAAA 297
Query: 293 HVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 352
HVIAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK+IK RLKGKEGR+RGNLMGKRVD
Sbjct: 298 HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVD 357
Query: 353 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
FSARTVITPDPNL+IDQVGVPRSIA NMTFPEIVTPFN+D
Sbjct: 358 FSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNID 397
>gi|324120506|dbj|BAJ78644.1| RNA polymerase II largest subunit [Metriocampa sp. 44]
Length = 1738
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 269/375 (71%), Positives = 311/375 (82%), Gaps = 5/375 (1%)
Query: 21 LSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHF 80
LSPDEIRRMSVTEGGI++ ET EGGRPKLGGLMDPRQGV+DR SRCQTCAGNMTECPGHF
Sbjct: 1 LSPDEIRRMSVTEGGIRYAETQEGGRPKLGGLMDPRQGVVDRLSRCQTCAGNMTECPGHF 60
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIY 140
GHIDLAKPVFH GF+ K+IKILRCVCFYCSKLLV+P+ P+++D++ K+KGQ R+R A +Y
Sbjct: 61 GHIDLAKPVFHSGFLVKSIKILRCVCFYCSKLLVNPTTPRIKDILQKSKGQPRKRLAAVY 120
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSLQN-KKQGHGGCGRYQPNIRRSGLDLTAEWKHV 199
DLCKGK ICEGGDE+D+ ++ +DPN+ Q KKQGHGGCGRYQP I+R+GLDLTAEWKHV
Sbjct: 121 DLCKGKTICEGGDEIDLQRE--DDPNAGQQPKKQGHGGCGRYQPKIKRAGLDLTAEWKHV 178
Query: 200 NEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDSQEKKIP 257
NED+QEKKIPLT + V + + C + + + D + V + +
Sbjct: 179 NEDAQEKKIPLTAERVWEIFRHISDEECYIMGMDPKYARPDWMIVTVLPVPPLAVRPAVV 238
Query: 258 LTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGL 317
+ G DDLTHKL+DIIK NNEL RNE SGAATH++ EN+KMLQFHVATL DNDMPGL
Sbjct: 239 MFGSARNQDDLTHKLSDIIKANNELQRNEQSGAATHILLENVKMLQFHVATLVDNDMPGL 298
Query: 318 PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 377
P+AMQKSG+PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA
Sbjct: 299 PKAMQKSGRPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 358
Query: 378 QNMTFPEIVTPFNMD 392
QN+TFPEIVTPFN+D
Sbjct: 359 QNLTFPEIVTPFNID 373
>gi|410979885|ref|XP_003996311.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Felis
catus]
Length = 1817
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLAKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRFAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSAXXQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|351701567|gb|EHB04486.1| DNA-directed RNA polymerase II subunit RPB1 [Heterocephalus glaber]
gi|417406836|gb|JAA50059.1| Putative rna polymerase i large subunit [Desmodus rotundus]
Length = 1970
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 269/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFGILSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGILSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|395836506|ref|XP_003791195.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Otolemur
garnettii]
Length = 1970
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|293340189|ref|XP_002724554.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Rattus norvegicus]
gi|293351610|ref|XP_002727769.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Rattus norvegicus]
Length = 1932
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|109488292|ref|XP_343923.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Rattus norvegicus]
gi|109491096|ref|XP_001079162.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Rattus norvegicus]
Length = 1970
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|281352199|gb|EFB27783.1| hypothetical protein PANDA_013866 [Ailuropoda melanoleuca]
Length = 1989
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|2145091|gb|AAB58418.1| RNA polymerase II largest subunit [Mus musculus]
Length = 1966
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|431894008|gb|ELK03814.1| DNA-directed RNA polymerase II subunit RPB1 [Pteropus alecto]
Length = 1975
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|6677795|ref|NP_033115.1| DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]
gi|200794|gb|AAA40071.1| RNA polymerase II [Mus musculus]
Length = 1932
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|2443334|dbj|BAA22376.1| RNA polymerase II largest subunit [Cricetulus griseus]
Length = 1970
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|444722932|gb|ELW63604.1| DNA-directed RNA polymerase II subunit RPB1 [Tupaia chinensis]
Length = 1801
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|395748505|ref|XP_002827010.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Pongo abelii]
Length = 1967
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|332847192|ref|XP_511300.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Pan
troglodytes]
Length = 1907
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|825713|emb|CAA52862.1| RNA polymerase II largest subunit [Homo sapiens]
Length = 1970
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|345800197|ref|XP_857844.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 isoform 3 [Canis lupus familiaris]
Length = 1970
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|301778185|ref|XP_002924473.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Ailuropoda melanoleuca]
Length = 1970
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|133327|sp|P08775.3|RPB1_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase II subunit A; AltName:
Full=DNA-directed RNA polymerase III largest subunit
Length = 1970
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|344290440|ref|XP_003416946.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Loxodonta
africana]
Length = 1970
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|281185484|sp|P24928.2|RPB1_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase II subunit A; AltName:
Full=DNA-directed RNA polymerase III largest subunit;
AltName: Full=RNA-directed RNA polymerase II subunit
RPB1
Length = 1970
Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|4505939|ref|NP_000928.1| DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]
gi|345842509|ref|NP_001230931.1| polymerase (RNA) II (DNA directed) polypeptide A [Cricetulus
griseus]
gi|332251063|ref|XP_003274666.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Nomascus
leucogenys]
gi|403274932|ref|XP_003929214.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Saimiri
boliviensis boliviensis]
gi|36124|emb|CAA45125.1| RNA polymerase II largest subunit [Homo sapiens]
gi|2443336|dbj|BAA22377.1| RNA polymerase II largest subunit [Cricetulus griseus]
gi|14328881|dbj|BAB60684.1| RNA polymerase II largest subunit [Cricetulus griseus]
gi|119610587|gb|EAW90181.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
CRA_a [Homo sapiens]
gi|223460954|gb|AAI37232.1| Polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Homo
sapiens]
Length = 1970
Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|432105605|gb|ELK31799.1| DNA-directed RNA polymerase II subunit RPB1 [Myotis davidii]
Length = 1970
Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|329663165|ref|NP_001193242.1| DNA-directed RNA polymerase II subunit RPB1 [Bos taurus]
Length = 1970
Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|426383941|ref|XP_004058535.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Gorilla gorilla gorilla]
Length = 1883
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|402898581|ref|XP_003912299.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Papio
anubis]
Length = 1970
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LSKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|410906965|ref|XP_003966962.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like,
partial [Takifugu rubripes]
Length = 1628
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 270/400 (67%), Positives = 323/400 (80%), Gaps = 21/400 (5%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFGI+SPDE++RMSVTEGGI++PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 8 DSACPLRTIKRVQFGIISPDELKRMSVTEGGIRYPETTEGGRPKLGGLMDPRQGVIERTG 67
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGFVTK +K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 68 RCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDANNPKIKDI 127
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
++K+KGQ R+R +Y+LCKGKNICEGG+EMD NK G E + ++ K++GHGGCGRYQ
Sbjct: 128 LVKSKGQPRKRLTHVYELCKGKNICEGGEEMD-NKFGMEQQETEEDITKEKGHGGCGRYQ 186
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD- 239
P IRRSGL+L AEWKHVNEDSQEKKI LL+ ++ H R + +I G+D
Sbjct: 187 PRIRRSGLELYAEWKHVNEDSQEKKI-------LLSPERVHEIFKRISDEEDIIL-GMDS 238
Query: 240 --LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAAT 292
EW V + + + G DDLTHKLADI+K NN+L RNE SGAA
Sbjct: 239 KFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAA 298
Query: 293 HVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 352
HVIAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK+IK RLKGKEGR+RGNLMGKRVD
Sbjct: 299 HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVD 358
Query: 353 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
FSARTVITPDPNL+IDQVGVPRSIA NMTFPEIVTPFN+D
Sbjct: 359 FSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNID 398
>gi|426383939|ref|XP_004058534.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Gorilla gorilla gorilla]
Length = 1921
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|296476824|tpg|DAA18939.1| TPA: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Bos
taurus]
Length = 1323
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|426238812|ref|XP_004013338.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Ovis aries]
Length = 1897
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|194217622|ref|XP_001918406.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Equus caballus]
Length = 1834
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|397477903|ref|XP_003846225.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Pan paniscus]
Length = 1719
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|380793277|gb|AFE68514.1| DNA-directed RNA polymerase II subunit RPB1, partial [Macaca
mulatta]
Length = 1658
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LSKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|355568192|gb|EHH24473.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca mulatta]
gi|355753712|gb|EHH57677.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca fascicularis]
Length = 1629
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LSKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|350590849|ref|XP_003483150.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sus scrofa]
Length = 1092
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|126309152|ref|XP_001364837.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Monodelphis domestica]
Length = 1970
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 267/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LGKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRR+GL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|126309154|ref|XP_001364909.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Monodelphis domestica]
Length = 1932
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 267/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LGKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRR+GL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|395533542|ref|XP_003768816.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sarcophilus
harrisii]
Length = 1921
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 267/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LGKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRR+GL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|348523738|ref|XP_003449380.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Oreochromis niloticus]
Length = 1966
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 267/405 (65%), Positives = 318/405 (78%), Gaps = 31/405 (7%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFGI+SPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 8 DSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 67
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF++K +K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 68 RCQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKVLRCVCFFCSKLLVDSNNPKIKDI 127
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ R+R +Y+LCKGKNICEGG+EMD NK G E + ++ K++GHGGCGRYQ
Sbjct: 128 LAKSKGQPRKRLTHVYELCKGKNICEGGEEMD-NKFGMEQQETEEDLTKEKGHGGCGRYQ 186
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQ----------PN 232
P I+RSGL+L AEWKHVNEDSQEKKI LL+ ++ H R P
Sbjct: 187 PRIKRSGLELYAEWKHVNEDSQEKKI-------LLSPERVHEIFKRISDEEDIILGMDPK 239
Query: 233 IRRSGLDLTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNES 287
R EW V + + + G DDLTHKLADI+K NN+L RNE
Sbjct: 240 FAR------PEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQ 293
Query: 288 SGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLM 347
SGAA HVIAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK+IK RLKGKEGR+RGNLM
Sbjct: 294 SGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLM 353
Query: 348 GKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
GKRVDFSARTVITPDPNL+IDQVGVPRSIA NMTFPEIVTPFN+D
Sbjct: 354 GKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNID 398
>gi|297271809|ref|XP_001118060.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Macaca
mulatta]
Length = 1097
Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LSKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|443728942|gb|ELU15060.1| hypothetical protein CAPTEDRAFT_170227 [Capitella teleta]
Length = 1916
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 266/402 (66%), Positives = 314/402 (78%), Gaps = 20/402 (4%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDR 62
++DS APL+ V ++QFGILSPDEIRRMSVTEGGIK+PET EGGRPK+GGLMDPRQGVIDR
Sbjct: 5 VSDSSAPLKEVHRMQFGILSPDEIRRMSVTEGGIKYPETTEGGRPKVGGLMDPRQGVIDR 64
Query: 63 SSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVR 122
SRCQTCAGNM+ECPGHFGH+DLAKPV+HVGF+TKTIK+LRC CF+CSKLLV P+HPK+R
Sbjct: 65 VSRCQTCAGNMSECPGHFGHVDLAKPVYHVGFLTKTIKVLRCFCFFCSKLLVDPAHPKIR 124
Query: 123 DVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKD--GAEDPNSLQNKKQGHGGCGR 180
D+V K+KG+ R+R A +YDLCKGKNICEGGDE+D + GAE+ + + HGGCGR
Sbjct: 125 DIVSKSKGKGRQRLAHVYDLCKGKNICEGGDEIDKEQSEPGAEEKKVRKQQASSHGGCGR 184
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDL 240
YQP IRR+GL L AEWKHVNEDSQ+KKI L+ + L K+ + NI + +
Sbjct: 185 YQPKIRRTGLTLMAEWKHVNEDSQDKKIVLSAERALEIFKR----ISDEESNI----IGM 236
Query: 241 TAEWKH----------VNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGA 290
+W V S + + G DDLTHKLADIIK NN+L RNE +GA
Sbjct: 237 DPKWARPDWMIIQVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIIKINNQLKRNELNGA 296
Query: 291 ATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
A H++ E+ KMLQFHVATL DN+MPGLPRA+QKSG+PLK++K RLKGKEGRIRGNLMGKR
Sbjct: 297 AAHILDEDTKMLQFHVATLVDNEMPGLPRAVQKSGRPLKSLKQRLKGKEGRIRGNLMGKR 356
Query: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VDFS RTVITPDP L I QVGVPRSIAQN+TFPEIVTPFN+D
Sbjct: 357 VDFSGRTVITPDPMLAITQVGVPRSIAQNLTFPEIVTPFNID 398
>gi|344237791|gb|EGV93894.1| DNA-directed RNA polymerase II subunit RPB1 [Cricetulus griseus]
Length = 617
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|405965007|gb|EKC30438.1| DNA-directed RNA polymerase II subunit RPB1 [Crassostrea gigas]
Length = 3055
Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust.
Identities = 260/391 (66%), Positives = 313/391 (80%), Gaps = 4/391 (1%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
ADS APLR VKKVQFGILSPDEIRRMSVT+GGI++ E EGGRPKLGGLMDPRQG IDRS
Sbjct: 5 ADSNAPLRDVKKVQFGILSPDEIRRMSVTDGGIRYSEVTEGGRPKLGGLMDPRQGTIDRS 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+RCQTCAGN++ECPGHFGHI+LAKPVFH+GF+ KTIKILRCVCF+CSKLLV P++PK+++
Sbjct: 65 ARCQTCAGNISECPGHFGHIELAKPVFHIGFLVKTIKILRCVCFFCSKLLVDPTNPKIKE 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
++ K+K R+R +YDLCK + +CEGGDEMD K G E ++K+GHGGCGRYQP
Sbjct: 125 ILSKSKAYPRKRLVAVYDLCKSRKVCEGGDEMDNAKLGEETQEG--DQKKGHGGCGRYQP 182
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV-LLNKKQGHGGCGRYQPNIRRSGLD-LT 241
I+R+GL+L AEWK NEDSQEKKI LT V + K+ C + R S D +
Sbjct: 183 KIKRTGLELIAEWKDTNEDSQEKKIVLTADRVHEIFKRISDDECQVLGMDHRYSRPDWMI 242
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + + + G DDLTHKLADIIK NN+L RNE +GAA+H+I+E++KM
Sbjct: 243 VTVMPVPPLAVRPAVVMFGSARNQDDLTHKLADIIKANNQLRRNEQNGAASHIISEDMKM 302
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+HVAT TDN++PGLP+A+QKSG+PLK++K RLKGKEGR+RGNLMGKRVDFSARTVITP
Sbjct: 303 LQYHVATFTDNELPGLPKAVQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFSARTVITP 362
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPNLRIDQVGVPRSIAQNMTFPE+VTPFN+D
Sbjct: 363 DPNLRIDQVGVPRSIAQNMTFPELVTPFNID 393
>gi|45501363|gb|AAH67295.1| POLR2A protein [Homo sapiens]
Length = 566
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 268/399 (67%), Positives = 318/399 (79%), Gaps = 17/399 (4%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 9 GDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERT 68
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D
Sbjct: 69 GRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKD 128
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRY 181
++ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRY
Sbjct: 129 ILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRY 187
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGL 238
QP IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 188 QPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR--- 244
Query: 239 DLTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATH 293
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA H
Sbjct: 245 ---PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
VIAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
SARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>gi|260796451|ref|XP_002593218.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
gi|229278442|gb|EEN49229.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
Length = 1934
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 261/395 (66%), Positives = 317/395 (80%), Gaps = 11/395 (2%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDR 62
++D+ APLR VK+VQFGILSPDEI+RMSVTEGGI++ E MEGGRPKL GLMDPRQGVIDR
Sbjct: 8 LSDTSAPLRPVKRVQFGILSPDEIKRMSVTEGGIRYSEMMEGGRPKLCGLMDPRQGVIDR 67
Query: 63 SSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVR 122
S+RCQTCAGNM ECPGHFGHI+LAKPV+H+GF+TKTIKI+RCVCF+CSKLLVSP P+++
Sbjct: 68 SARCQTCAGNMAECPGHFGHIELAKPVYHIGFLTKTIKIMRCVCFFCSKLLVSPDDPRIK 127
Query: 123 DVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDIN---KDGAEDPNSLQNKKQGHGGCG 179
D+V K+KGQ ++R +YDLCKGK ICEGGDE+D + ++G E+ K +GHGGCG
Sbjct: 128 DIVNKSKGQPKKRLTHVYDLCKGKMICEGGDEVDADVGPEEGKEE------KPKGHGGCG 181
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGL 238
RYQP IRR+GLDLTAEWKHVNEDSQE+KI L+ + VL + K+ C + R +
Sbjct: 182 RYQPQIRRAGLDLTAEWKHVNEDSQERKIQLSAERVLEIFKRISDEECSIMGMDPRFARP 241
Query: 239 D-LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
D + V + + G DDLTHKLADI+K NN+L RNE +GAA H+IAE
Sbjct: 242 DWMVCTVLPVAPLQVRPSVVMFGAARGQDDLTHKLADIVKINNQLKRNEMNGAAAHIIAE 301
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
+ KMLQFHV TL DN++PG+PRA+QKSG+PLK++K RLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 302 DTKMLQFHVTTLVDNEVPGMPRAVQKSGRPLKSVKQRLKGKEGRIRGNLMGKRVDFSARA 361
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNL+IDQVG PR++AQN+TFPEIVTPFN+D
Sbjct: 362 VITPDPNLQIDQVGCPRTVAQNLTFPEIVTPFNID 396
>gi|432920271|ref|XP_004079921.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Oryzias latipes]
Length = 1599
Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust.
Identities = 266/405 (65%), Positives = 316/405 (78%), Gaps = 31/405 (7%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFGI+SPDE++RMSVT GIK+PET EGGRPKL GLMDPRQGVI+RS
Sbjct: 8 DSACPLRTIKRVQFGIISPDELKRMSVTTEGIKYPETTEGGRPKLCGLMDPRQGVIERSG 67
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF++K +K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 68 RCQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKVLRCVCFFCSKLLVDSNNPKIKDI 127
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ R+R +Y+LCKGKNICEGG+EMD NK G E ++ ++ K++GHGGCGRYQ
Sbjct: 128 LTKSKGQPRKRLTHVYELCKGKNICEGGEEMD-NKFGVEQQDTEEDITKEKGHGGCGRYQ 186
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQ----------PN 232
P IRRSGL+L AEWKHVNEDSQEKKI LL+ ++ H R P
Sbjct: 187 PRIRRSGLELFAEWKHVNEDSQEKKI-------LLSPERVHEIFKRISDEEDLILGMDPK 239
Query: 233 IRRSGLDLTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNES 287
R EW V + + + G DDLTHKLADI+K NN+L RNE
Sbjct: 240 FAR------PEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQ 293
Query: 288 SGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLM 347
SGAA HVIAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK+IK RLKGKEGR+RGNLM
Sbjct: 294 SGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLM 353
Query: 348 GKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
GKRVDFSARTVITPDPNL+IDQVGVPRSIA NMTFPEIVTPFN+D
Sbjct: 354 GKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNID 398
>gi|291220940|ref|XP_002730482.1| PREDICTED: DNA-directed RNA polymerase II A-like [Saccoglossus
kowalevskii]
Length = 1932
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 255/395 (64%), Positives = 304/395 (76%), Gaps = 8/395 (2%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DSKAPLR V +VQF ILSPDEI+RMSVTEGGI++ ET EGGRPKL GLMDPRQGV+DR S
Sbjct: 8 DSKAPLREVVRVQFSILSPDEIKRMSVTEGGIRYSETTEGGRPKLQGLMDPRQGVVDRLS 67
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNM +CPGHFGHI+L+KPVFHVGF+ K +K+LRC CFYCSKLLV +HPK++++
Sbjct: 68 RCQTCAGNMHDCPGHFGHIELSKPVFHVGFIAKVVKVLRCFCFYCSKLLVDNNHPKIKEI 127
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDG----AEDPNSLQNKKQGHGGCGR 180
++K+KG R+R +Y+LCKGK +CEGG+EMD D ED K +GHGGCGR
Sbjct: 128 LIKSKGLPRKRLGHVYELCKGKKVCEGGEEMDHKFDADLAQREDEADQPAKPKGHGGCGR 187
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQ---GHGGCGRYQPNIRRSG 237
YQP+IRR+GL+LTAEWK+VNEDSQEKKI LT + VL K+ P R
Sbjct: 188 YQPSIRRAGLELTAEWKNVNEDSQEKKIILTAERVLEIFKRISDEESLIIGMDPQYTRPD 247
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V + + + G DDLTHKLADI+K +N+L RNE +GAA H+IAE
Sbjct: 248 WMIVTVLP-VPPLAVRPAVVMNGSAKNQDDLTHKLADIVKASNQLKRNEQNGAAAHIIAE 306
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
+ KMLQFHV T+ DN+ PGLPRAMQKSG+PLK+IK RLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 307 DTKMLQFHVCTMVDNEQPGLPRAMQKSGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARA 366
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VITPDPNL IDQVGVPR+IAQN+TFPE+VTPFN+D
Sbjct: 367 VITPDPNLSIDQVGVPRTIAQNLTFPELVTPFNID 401
>gi|327287678|ref|XP_003228555.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Anolis
carolinensis]
Length = 1969
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 262/438 (59%), Positives = 308/438 (70%), Gaps = 97/438 (22%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFGILSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 9 DSACPLRTIKRVQFGILSPDEMKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 68
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 69 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLGKTMKVLRCVCFFCSKLLVDSNNPKIKDI 128
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPN 184
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P
Sbjct: 129 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEG----------------- 170
Query: 185 IRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEW 244
+ED + K++GHGGCGRYQP IRRSGL+L AEW
Sbjct: 171 ---------------DED--------------ITKEKGHGGCGRYQPRIRRSGLELYAEW 201
Query: 245 KHVNEDSQEKKI------------------------------------------PLTGKG 262
KHVNEDSQEKKI PL+ +
Sbjct: 202 KHVNEDSQEKKILLSPERVHEIFKRISDEECFILGMDPKFARPEWMICTVLPVPPLSVRP 261
Query: 263 VLL--------DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM 314
++ DDLTHKLADI+K NN+L RNE +GAA HVIAE++K+LQFHVAT+ DN++
Sbjct: 262 AVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNEL 321
Query: 315 PGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFSARTVITPDPNL IDQVGVPR
Sbjct: 322 PGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPR 381
Query: 375 SIAQNMTFPEIVTPFNMD 392
SIA NMTF EIVTPFN+D
Sbjct: 382 SIAANMTFAEIVTPFNID 399
>gi|449680520|ref|XP_004209607.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Hydra
magnipapillata]
Length = 576
Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust.
Identities = 257/389 (66%), Positives = 301/389 (77%), Gaps = 2/389 (0%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S APLR VKKVQFG+LSPDEIRRMSVT+GGI + ETME G+PKL GLMDPRQG IDR +R
Sbjct: 10 SSAPLRLVKKVQFGVLSPDEIRRMSVTDGGICYAETMEAGKPKLCGLMDPRQGTIDRMTR 69
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
CQTCAGNMTECPGHFGHI+L+KPVFH+GF+T TIKI+RC CFYCSKLLV +HPK+ +++
Sbjct: 70 CQTCAGNMTECPGHFGHIELSKPVFHIGFLTMTIKIMRCFCFYCSKLLVDKNHPKLLEIL 129
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
KTK Q ++R +YDLCKGK+ICEGGD MD D N Q +K+GHGGCGRYQP I
Sbjct: 130 SKTKSQPKKRFQHVYDLCKGKSICEGGDIMDQQFDANLANNEEQAEKKGHGGCGRYQPQI 189
Query: 186 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAE 243
RR LDLTAEWK+VNEDSQEKKI LT + V + K+ C + + D L
Sbjct: 190 RRQALDLTAEWKNVNEDSQEKKISLTAERVHEIFKRITDEECDILGMDAKFCRPDWLIVT 249
Query: 244 WKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
V S + + G DDLTHKLADIIK NN+L RNE +GAA HVIA+++ MLQ
Sbjct: 250 VLPVPPLSVRPAVVMNGSARNQDDLTHKLADIIKANNQLKRNEMNGAAAHVIAQDLMMLQ 309
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
FHVATLTDN++PGLPRA QKSG+PLK+IK RLK KEGR+RGNLMGKRVDFSAR VITPDP
Sbjct: 310 FHVATLTDNELPGLPRAQQKSGRPLKSIKQRLKSKEGRLRGNLMGKRVDFSARAVITPDP 369
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
NL IDQVG P++IA N+T+PEIVTPFN+D
Sbjct: 370 NLDIDQVGTPKTIAMNLTYPEIVTPFNID 398
>gi|391335740|ref|XP_003742247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1842
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 249/391 (63%), Positives = 305/391 (78%), Gaps = 6/391 (1%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
+DSKA LR V++VQFGIL PDEIRRMSVTEGGI++ E EG RPKLGGLMDPRQGVIDR+
Sbjct: 7 SDSKATLREVREVQFGILDPDEIRRMSVTEGGIRYAEIYEGNRPKLGGLMDPRQGVIDRT 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRC TC+GNMTECPGHFGH++LAKPVFHVGF+TKT+K+LRCVC+YCS+LLVSP+HP++R+
Sbjct: 67 SRCLTCSGNMTECPGHFGHLELAKPVFHVGFLTKTLKVLRCVCYYCSRLLVSPNHPRMRE 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
++ KT+ R+R +Y++CK K +CE E D + G +P + KK H GCGR+QP
Sbjct: 127 ILTKTRTMQRQRLDKVYEVCKAKRMCE---ESDTSDKGQGEPTE-EEKKTMHVGCGRFQP 182
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LT 241
N RRSGLD++AEWKH NED+QEKK LT + V + K C + R + D +
Sbjct: 183 NYRRSGLDISAEWKHTNEDNQEKKQVLTAERVYEIFKHISEEECFCLGMDERYAKPDWMV 242
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + + G DDLTHKL+DI+K NNE+IRNE SGAA H++ EN+KM
Sbjct: 243 LTVLAVPPLCVRPAVVMFGSARNQDDLTHKLSDIVKANNEIIRNEQSGAAPHILTENVKM 302
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQFHVATL DN++PGLPRAMQKSG+PLK++K RLK KEGRIRGNLMGKRVDFSARTVITP
Sbjct: 303 LQFHVATLYDNELPGLPRAMQKSGRPLKSLKQRLKAKEGRIRGNLMGKRVDFSARTVITP 362
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPNL+ID+VGVPRSIAQN+TFPEIVTPFN++
Sbjct: 363 DPNLKIDEVGVPRSIAQNLTFPEIVTPFNIE 393
>gi|390462987|ref|XP_003732945.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Callithrix jacchus]
Length = 1899
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 252/374 (67%), Positives = 297/374 (79%), Gaps = 17/374 (4%)
Query: 29 MSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHFGHIDLAKP 88
MSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+ RCQTCAGNMTECPGHFGHI+LAKP
Sbjct: 1 MSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKP 60
Query: 89 VFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNI 148
VFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D++ K+KGQ ++R +YDLCKGKNI
Sbjct: 61 VFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNI 120
Query: 149 CEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEK 206
CEGG+EMD NK G E P ++ K++GHGGCGRYQP IRRSGL+L AEWKHVNEDSQEK
Sbjct: 121 CEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEK 179
Query: 207 KIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLDLTAEWKHVN-----EDSQEKKIPL 258
KI L+ + V + K+ C +P R EW V S + +
Sbjct: 180 KILLSPERVHEIFKRISDEECFVLGMEPRYAR------PEWMIVTVLPVPPLSVRPAVVM 233
Query: 259 TGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
G DDLTHKLADI+K NN+L RNE +GAA HVIAE++K+LQFHVAT+ DN++PGLP
Sbjct: 234 QGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLP 293
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
RAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFSARTVITPDPNL IDQVGVPRSIA
Sbjct: 294 RAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAA 353
Query: 379 NMTFPEIVTPFNMD 392
NMTF EIVTPFN+D
Sbjct: 354 NMTFAEIVTPFNID 367
>gi|296201388|ref|XP_002748007.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Callithrix jacchus]
Length = 1937
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 252/374 (67%), Positives = 297/374 (79%), Gaps = 17/374 (4%)
Query: 29 MSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHFGHIDLAKP 88
MSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+ RCQTCAGNMTECPGHFGHI+LAKP
Sbjct: 1 MSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKP 60
Query: 89 VFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNI 148
VFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D++ K+KGQ ++R +YDLCKGKNI
Sbjct: 61 VFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNI 120
Query: 149 CEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEK 206
CEGG+EMD NK G E P ++ K++GHGGCGRYQP IRRSGL+L AEWKHVNEDSQEK
Sbjct: 121 CEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEK 179
Query: 207 KIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLDLTAEWKHVN-----EDSQEKKIPL 258
KI L+ + V + K+ C +P R EW V S + +
Sbjct: 180 KILLSPERVHEIFKRISDEECFVLGMEPRYAR------PEWMIVTVLPVPPLSVRPAVVM 233
Query: 259 TGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
G DDLTHKLADI+K NN+L RNE +GAA HVIAE++K+LQFHVAT+ DN++PGLP
Sbjct: 234 QGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLP 293
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
RAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFSARTVITPDPNL IDQVGVPRSIA
Sbjct: 294 RAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAA 353
Query: 379 NMTFPEIVTPFNMD 392
NMTF EIVTPFN+D
Sbjct: 354 NMTFAEIVTPFNID 367
>gi|156380969|ref|XP_001632039.1| predicted protein [Nematostella vectensis]
gi|156219089|gb|EDO39976.1| predicted protein [Nematostella vectensis]
Length = 1929
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 257/402 (63%), Positives = 308/402 (76%), Gaps = 12/402 (2%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVT-EGGIKFPETMEGGRPKLGGLMDPRQGVID 61
++ S APLR VK+VQFGILSPDEI++MSVT +GG+K+ ETMEGGRPKL GLMDPRQG ID
Sbjct: 4 VSGSPAPLRDVKRVQFGILSPDEIKQMSVTTDGGVKYSETMEGGRPKLNGLMDPRQGTID 63
Query: 62 RSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKV 121
R SRCQTCAGNMTECPGHFGHI+LAKPVFHVGF+TK +K LRCVCFYCSKLLV ++P+V
Sbjct: 64 RFSRCQTCAGNMTECPGHFGHIELAKPVFHVGFMTKIVKTLRCVCFYCSKLLVDLNNPRV 123
Query: 122 RDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNS---------LQNKK 172
++++ K+ GQ R+R +YDLCKGKNICEGGDE+D ++PN L N
Sbjct: 124 KEILSKSHGQPRKRMMHMYDLCKGKNICEGGDEVDAGVLAQDNPNEAEKKLVRIYLPNAY 183
Query: 173 QGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQP 231
HGGCGRYQP R++ L+LTAEWKHVNED+ EKKI LT + V + K+ C
Sbjct: 184 CNHGGCGRYQPKFRKTALELTAEWKHVNEDANEKKITLTAERVYEIFKRISDEECNALGM 243
Query: 232 NIRRSGLD-LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGA 290
+ + + D + V I L+G DDLTHKLADI+K NN L RNE +GA
Sbjct: 244 DPKNARPDWMIVTVLPVPPLPVRPSIVLSGTARSQDDLTHKLADIVKANNNLRRNELNGA 303
Query: 291 ATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
A H+IAE+ ++LQ+HVATLTDN++PGLPRAMQKSG+PLK++K RLK KEGRIRGNLMGKR
Sbjct: 304 AAHIIAEDTRLLQYHVATLTDNEIPGLPRAMQKSGRPLKSVKQRLKSKEGRIRGNLMGKR 363
Query: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VDFSAR VITPDPNL IDQVGVPR+IAQN+TFPEIVTPFN+D
Sbjct: 364 VDFSARAVITPDPNLSIDQVGVPRTIAQNLTFPEIVTPFNID 405
>gi|345309516|ref|XP_003428845.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1, partial
[Ornithorhynchus anatinus]
Length = 988
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 251/374 (67%), Positives = 297/374 (79%), Gaps = 17/374 (4%)
Query: 29 MSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHFGHIDLAKP 88
MSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+ RCQTCAGNMTECPGHFGHI+LAKP
Sbjct: 1 MSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKP 60
Query: 89 VFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNI 148
VFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D++ K+KGQ ++R +YDLCKGKNI
Sbjct: 61 VFHVGFLVKTMKVLRCVCFFCSKLLVDANNPKIKDILGKSKGQPKKRLTHVYDLCKGKNI 120
Query: 149 CEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEK 206
CEGG+EMD NK G E P ++ K++GHGGCGRYQP IRR+GL+L AEWKHVNEDSQEK
Sbjct: 121 CEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRTGLELYAEWKHVNEDSQEK 179
Query: 207 KIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLDLTAEWKHVN-----EDSQEKKIPL 258
KI L+ + V + K+ C +P R EW V S + +
Sbjct: 180 KILLSPERVHEIFKRISDEECFVLGMEPRYAR------PEWMIVTVLPVPPLSVRPAVVM 233
Query: 259 TGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
G DDLTHKLADI+K NN+L RNE +GAA HVIAE++K+LQFHVAT+ DN++PGLP
Sbjct: 234 QGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLP 293
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
RAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFSARTVITPDPNL IDQVGVPRSIA
Sbjct: 294 RAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAA 353
Query: 379 NMTFPEIVTPFNMD 392
NMTF EIVTPFN+D
Sbjct: 354 NMTFAEIVTPFNID 367
>gi|390363773|ref|XP_003730447.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Strongylocentrotus purpuratus]
Length = 1880
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 246/393 (62%), Positives = 299/393 (76%), Gaps = 7/393 (1%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DSKAP+R V++VQFG+LSPDE+RR SVTEGGI++ E ME G+PKLGGLMDPRQG IDR+S
Sbjct: 8 DSKAPMRNVRRVQFGVLSPDEMRRNSVTEGGIRYSEIMEAGKPKLGGLMDPRQGAIDRTS 67
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCA N T+CPGHFGH++LAK VFH+GF+TKTIK+LRCVCF+CSKLLV +HPK++++
Sbjct: 68 RCQTCACNQTDCPGHFGHMELAKAVFHIGFLTKTIKVLRCVCFFCSKLLVDANHPKIKEI 127
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKD---GAEDPNSLQNKKQGHGGCGRY 181
++KTKGQ R+R +Y C+ K +CEGG+EMD D + + KK HGGCGRY
Sbjct: 128 LIKTKGQPRKRLLHVYTECRKKKMCEGGEEMDQTFDANLAQREGEEMPEKKVSHGGCGRY 187
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV--LLNKKQGHGGCGR-YQPNIRRSGL 238
QP IRRSGLDL+AEWKHVNEDSQEKKI LT + V + + P R
Sbjct: 188 QPQIRRSGLDLSAEWKHVNEDSQEKKIVLTAERVHEIFKRISDEESIALGMDPKFTRPDW 247
Query: 239 DLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
+ V + + G DDLTHKLADI+K NN+L RNE +GAA H+IAE+
Sbjct: 248 MIITVLP-VPPLCVRPAVVMFGSTRNQDDLTHKLADIMKINNQLKRNEQNGAAAHIIAED 306
Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
+MLQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLK KEGRIRGNLMGKRVDFSAR V
Sbjct: 307 TRMLQFHVATIIDNELPGLPRAMQKSGRPLKSLKQRLKAKEGRIRGNLMGKRVDFSARAV 366
Query: 359 ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
ITPDPNL IDQVGVPR+IA N+T+PEIVTPFN+
Sbjct: 367 ITPDPNLMIDQVGVPRTIATNLTYPEIVTPFNI 399
>gi|115910670|ref|XP_788781.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
3 [Strongylocentrotus purpuratus]
Length = 1921
Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust.
Identities = 246/393 (62%), Positives = 299/393 (76%), Gaps = 7/393 (1%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DSKAP+R V++VQFG+LSPDE+RR SVTEGGI++ E ME G+PKLGGLMDPRQG IDR+S
Sbjct: 8 DSKAPMRNVRRVQFGVLSPDEMRRNSVTEGGIRYSEIMEAGKPKLGGLMDPRQGAIDRTS 67
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCA N T+CPGHFGH++LAK VFH+GF+TKTIK+LRCVCF+CSKLLV +HPK++++
Sbjct: 68 RCQTCACNQTDCPGHFGHMELAKAVFHIGFLTKTIKVLRCVCFFCSKLLVDANHPKIKEI 127
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKD---GAEDPNSLQNKKQGHGGCGRY 181
++KTKGQ R+R +Y C+ K +CEGG+EMD D + + KK HGGCGRY
Sbjct: 128 LIKTKGQPRKRLLHVYTECRKKKMCEGGEEMDQTFDANLAQREGEEMPEKKVSHGGCGRY 187
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV--LLNKKQGHGGCGR-YQPNIRRSGL 238
QP IRRSGLDL+AEWKHVNEDSQEKKI LT + V + + P R
Sbjct: 188 QPQIRRSGLDLSAEWKHVNEDSQEKKIVLTAERVHEIFKRISDEESIALGMDPKFTRPDW 247
Query: 239 DLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
+ V + + G DDLTHKLADI+K NN+L RNE +GAA H+IAE+
Sbjct: 248 MIITVLP-VPPLCVRPAVVMFGSTRNQDDLTHKLADIMKINNQLKRNEQNGAAAHIIAED 306
Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
+MLQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLK KEGRIRGNLMGKRVDFSAR V
Sbjct: 307 TRMLQFHVATIIDNELPGLPRAMQKSGRPLKSLKQRLKAKEGRIRGNLMGKRVDFSARAV 366
Query: 359 ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
ITPDPNL IDQVGVPR+IA N+T+PEIVTPFN+
Sbjct: 367 ITPDPNLMIDQVGVPRTIATNLTYPEIVTPFNI 399
>gi|301628367|ref|XP_002943327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like,
partial [Xenopus (Silurana) tropicalis]
Length = 1946
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 252/425 (59%), Positives = 297/425 (69%), Gaps = 99/425 (23%)
Query: 18 FGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECP 77
FG LSP +RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+ RCQTCAGNMTECP
Sbjct: 1 FGCLSPQ--KRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECP 58
Query: 78 GHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQA 137
GHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+++K+KGQ ++R
Sbjct: 59 GHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDANNPKIKDILIKSKGQPKKRLT 118
Query: 138 FIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK 197
+Y+LCKGKNICEGG+EMD NK G E Q G
Sbjct: 119 HVYELCKGKNICEGGEEMD-NKFGVE---------QTEG--------------------- 147
Query: 198 HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKI- 256
+ED Q K++GHGGCGRYQP IRR+GL+L AEWKHVNEDSQEKKI
Sbjct: 148 --DEDIQ--------------KEKGHGGCGRYQPRIRRTGLELYAEWKHVNEDSQEKKIL 191
Query: 257 -----------------------------------------PLTGKGVLL--------DD 267
PL+ + ++ DD
Sbjct: 192 LSPERVHEIFKRITDEECFILGMDPRFARPEWLIVTVLPVPPLSVRPAVVMQGSARNQDD 251
Query: 268 LTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKP 327
LTHKLADI+K NN+L RNE +GAA HVIAE++K+LQFHVAT+ DN++PGLPRAMQKSG+P
Sbjct: 252 LTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRP 311
Query: 328 LKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVT 387
LK++K RLKGKEGR+RGNLMGKRVDFSARTVITPDPNL IDQVGVPRSIA NMTFPEIVT
Sbjct: 312 LKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFPEIVT 371
Query: 388 PFNMD 392
PFN+D
Sbjct: 372 PFNID 376
>gi|391332786|ref|XP_003740810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1851
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 248/440 (56%), Positives = 299/440 (67%), Gaps = 103/440 (23%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
+DSKA LR V++VQFGIL PDEIRRMSVTEGGI++ E EG RPKLGGLMDPRQGVIDR+
Sbjct: 7 SDSKAILREVREVQFGILDPDEIRRMSVTEGGIRYAEIYEGNRPKLGGLMDPRQGVIDRT 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRC TC+GNMTECPGHFGH++LAKPVFHVGF+TKT+K+LRCVC+YCS+LLVSP+HP++R+
Sbjct: 67 SRCLTCSGNMTECPGHFGHLELAKPVFHVGFLTKTLKVLRCVCYYCSRLLVSPNHPRMRE 126
Query: 124 VVLKTKG-QSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQ 182
++ KTK Q ++R +Y++CK K++CE D D K QG
Sbjct: 127 ILSKTKTTQRQQRLDKVYEICKTKSMCEESDTSD--------------KGQG-------- 164
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA 242
E ++E++ K H GCGRYQPN RRSGLD++A
Sbjct: 165 ------------------EPTEEER------------KMMHVGCGRYQPNYRRSGLDISA 194
Query: 243 EWKHVNEDSQEKKIPLTGKGVL-------------------------------------- 264
EWKH NE++QEKK LT + V
Sbjct: 195 EWKHTNEENQEKKQVLTAERVYEIFKHISEEECFCLGMDERYAKPSWMVLTVLAVPPLCV 254
Query: 265 ------------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDN 312
DDLTHKL+DI+K NNELIRNE SGAA H++AEN+KMLQFHVATL DN
Sbjct: 255 RPAVVMFGSARNQDDLTHKLSDIVKANNELIRNEQSGAAPHILAENVKMLQFHVATLYDN 314
Query: 313 DMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGV 372
++PGLPRAMQKSG+PLK+IK RLK KEGRIRGNLMGKRVDFSARTVITPDPNL+I++VGV
Sbjct: 315 ELPGLPRAMQKSGRPLKSIKQRLKAKEGRIRGNLMGKRVDFSARTVITPDPNLKINEVGV 374
Query: 373 PRSIAQNMTFPEIVTPFNMD 392
PRSIAQN+TFPEIVTPFN++
Sbjct: 375 PRSIAQNLTFPEIVTPFNIE 394
>gi|195996443|ref|XP_002108090.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
gi|190588866|gb|EDV28888.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
Length = 1784
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 246/394 (62%), Positives = 292/394 (74%), Gaps = 21/394 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S AP+R + +VQFGILSPDEI+RMSVT GGI++ ET E G+PKL GL+DPRQG +DRSSR
Sbjct: 9 STAPIRNINRVQFGILSPDEIKRMSVTPGGIRYAETYEAGKPKLCGLLDPRQGPVDRSSR 68
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
CQTCAG + ECPGHFGHI+LA+PVFH+GF+ K+IKILRCVCFYCSKLL+ S PKV D++
Sbjct: 69 CQTCAGTVNECPGHFGHIELARPVFHIGFLVKSIKILRCVCFYCSKLLIKKSDPKVIDII 128
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
KT+G+ R R IYDLCK KNIC+ N DG ED L KK+ H GCGR+QP I
Sbjct: 129 SKTRGRLRVRLQHIYDLCKSKNICQ-------NDDG-EDAEGLDEKKE-HSGCGRHQPII 179
Query: 186 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD----- 239
RR+GL+LTAEWK +NEDSQE+KI LT + V + K+ + R + D
Sbjct: 180 RRNGLELTAEWKKINEDSQERKINLTAERVYEIFKRISDEDSEVLGMDPRFARPDWMIIT 239
Query: 240 -LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
L HV + + G DDLTHKLADIIK NN L RNES GA HVI E+
Sbjct: 240 CLPVPPLHV-----RPSVVMHGSARSQDDLTHKLADIIKANNNLQRNESCGAPAHVITED 294
Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
+MLQFHV TLTDN++PG+P+AMQKSG+PLK+IK RLKGKEGRIRGNLMGKRVDFSARTV
Sbjct: 295 TRMLQFHVTTLTDNEVPGMPKAMQKSGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV 354
Query: 359 ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ITPD NL IDQVGVPRSIAQ +++PEIVTP N+D
Sbjct: 355 ITPDSNLEIDQVGVPRSIAQTLSYPEIVTPLNID 388
>gi|321459276|gb|EFX70331.1| hypothetical protein DAPPUDRAFT_328199 [Daphnia pulex]
Length = 1457
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 232/391 (59%), Positives = 286/391 (73%), Gaps = 23/391 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
++ +R VK++Q GILSP EIR+MSVTEGGIK+PE EGG+PKLGGLMDPRQG I +S+
Sbjct: 11 TQPTIRQVKRIQLGILSPKEIRKMSVTEGGIKYPEIYEGGKPKLGGLMDPRQGAIHQSAS 70
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
CQTC NM ECPGHFGHIDLAKP+FH+GF+ KTIKILRCVCFYCSKLLVSPS+PK++ ++
Sbjct: 71 CQTCDRNMNECPGHFGHIDLAKPIFHIGFLMKTIKILRCVCFYCSKLLVSPSNPKIKKIL 130
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
+ +KGQ R R A ++DLCKG NIC E+DI + GH GCGRYQP I
Sbjct: 131 VISKGQPRTRMALVHDLCKGINIC----EIDI-------------ETTGHVGCGRYQPKI 173
Query: 186 RRSGLDLTAEWKHVNEDSQEKKIPLT-GKGVLLNKKQGHGGC---GRYQPNIRRSGLDLT 241
RR GL+L EWKHV+ED QE + LT G+ + K C G R + +T
Sbjct: 174 RRQGLELIGEWKHVDEDWQETNLVLTAGRVWEIFKHISDEDCLILGMDPKYARPDWMIIT 233
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V+ + + + G +DLT KLAD++K N EL+RN SGAA H+IAENI++
Sbjct: 234 C--LPVSPPAVRPAVVMHGSASKQNDLTRKLADVVKANEELLRNVQSGAAAHIIAENIEL 291
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQFHVAT+ ND+ GLP A +SG+P+ +IKARL+G++GRIRGNLMGKRVDFSARTVITP
Sbjct: 292 LQFHVATMMINDLEGLPVAQLESGRPIVSIKARLEGRDGRIRGNLMGKRVDFSARTVITP 351
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPNLRIDQVGVPRSIAQN+TFPEIVT FN++
Sbjct: 352 DPNLRIDQVGVPRSIAQNITFPEIVTSFNIE 382
>gi|308468219|ref|XP_003096353.1| CRE-AMA-1 protein [Caenorhabditis remanei]
gi|308243268|gb|EFO87220.1| CRE-AMA-1 protein [Caenorhabditis remanei]
Length = 1853
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/399 (58%), Positives = 292/399 (73%), Gaps = 20/399 (5%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
D +APLR V +VQFGIL P+EI+RMSV ++FPE E G+PKLGGLMDPRQGVIDR
Sbjct: 6 VDFQAPLRTVCRVQFGILGPEEIKRMSVAH--VEFPEIYENGKPKLGGLMDPRQGVIDRR 63
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TCAGN+T+CPGHF H++LAKPVFH+GF+TK++KILRCVCFYC +LL+ S+P+V D
Sbjct: 64 GRCMTCAGNLTDCPGHFAHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLIDKSNPRVID 123
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDIN-KDGAEDPNSLQNKKQGHGGCGRYQ 182
++ KT G +++R A IYDLCK K++CEG E + D +DP + +K+ GCGRYQ
Sbjct: 124 ILKKTSGNAKKRLALIYDLCKSKSVCEGAAEKEEGLPDDVDDP--MSGEKKIPAGCGRYQ 181
Query: 183 PNIRRSGLDLTAEW-KHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD-- 239
P+ RR G+D+ AEW K+VNED+QE+KI LT + VL KQ +I G+D
Sbjct: 182 PSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFKQ------ITDEDILVIGMDPQ 235
Query: 240 -LTAEWK-----HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATH 293
EW V + + G DDLTHKL+DIIK N +L RNE++GAA H
Sbjct: 236 FARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAH 295
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
V+ +++++LQ+HVATL DN +PGLP A QK G+PLK+IK RLKGKEGRIRGNLMGKRVDF
Sbjct: 296 VLTDDVRLLQYHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDF 355
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
SARTVIT DPNL ID VGVPR+IAQN+TFPEIVTPFN+D
Sbjct: 356 SARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVD 394
>gi|268553547|ref|XP_002634760.1| C. briggsae CBR-RPB-1 protein [Caenorhabditis briggsae]
gi|60393735|sp|P35074.2|RPB1_CAEBR RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
Length = 1853
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/399 (58%), Positives = 291/399 (72%), Gaps = 20/399 (5%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
D +APLR V +VQFGIL P+EI+RMSV ++FPE E G+PK+GGLMDPRQGVIDR
Sbjct: 6 VDFQAPLRTVCRVQFGILGPEEIKRMSVAH--VEFPEVYENGKPKMGGLMDPRQGVIDRR 63
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TCAGN+T+CPGHFGH++LAKPVFH+GF+TK++KILRCVCFYC +LL+ ++P+V D
Sbjct: 64 GRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLIDKTNPRVMD 123
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEM-DINKDGAEDPNSLQNKKQGHGGCGRYQ 182
++ KT G ++R A IYDLCK K++CEG E D D +DP + K+ GCGRYQ
Sbjct: 124 ILKKTSGNPKKRLALIYDLCKSKSVCEGAAEKEDGLPDDMDDP--MNEGKKVPAGCGRYQ 181
Query: 183 PNIRRSGLDLTAEW-KHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD-- 239
P+ RR G+D+ AEW K+VNED+QE+KI LT + VL KQ +I G+D
Sbjct: 182 PSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFKQ------ITDEDILVIGMDPQ 235
Query: 240 -LTAEWK-----HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATH 293
EW V + + G DDLTHKL+DIIK N +L RNE++GAA H
Sbjct: 236 FARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAH 295
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
V+ +++++LQ+HVATL DN +PGLP A QK G+PLK+IK RLKGKEGRIRGNLMGKRVDF
Sbjct: 296 VLTDDVRLLQYHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDF 355
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
SARTVIT DPNL ID VGVPR+IAQN+TFPEIVTPFN+D
Sbjct: 356 SARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVD 394
>gi|341894670|gb|EGT50605.1| hypothetical protein CAEBREN_32550 [Caenorhabditis brenneri]
Length = 1713
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 233/398 (58%), Positives = 288/398 (72%), Gaps = 18/398 (4%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
D +APLR V +VQFGIL P+EI+RMSV ++FPE E G+PKLGGLMDPRQGVIDR
Sbjct: 6 VDFQAPLRTVCRVQFGILGPEEIKRMSVAH--VEFPEIYENGKPKLGGLMDPRQGVIDRR 63
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TCAGN+T+CPGHFGH++LAKPVFH+GF+TK++KILRCVCFYC +LL+ S+P+V D
Sbjct: 64 GRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLIDKSNPRVMD 123
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
++ KT G ++R A IYDLCK K++CEG E+ D +KK GCGRYQP
Sbjct: 124 ILKKTTGNPKKRLALIYDLCKSKSVCEGAAELKDEMPDDPDDPMNDSKKIP-SGCGRYQP 182
Query: 184 NIRRSGLDLTAEW-KHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD--- 239
+ RR G+D+ AEW K+VNED+QE+KI LT + VL KQ +I G+D
Sbjct: 183 SYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLETFKQ------ITDEDILVIGMDPQF 236
Query: 240 LTAEWK-----HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V + + G DDLTHKL+DIIK N +L RNE++GAA HV
Sbjct: 237 ARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHV 296
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
+ +++++LQ+HVATL DN +PGLP A QK G+PLK+IK RLKGKEGRIRGNLMGKRVDFS
Sbjct: 297 LTDDVRLLQYHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFS 356
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVIT DPNL ID VGVPR+IAQN+TFPEIVTPFN+D
Sbjct: 357 ARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVD 394
>gi|392898787|ref|NP_500523.4| Protein AMA-1 [Caenorhabditis elegans]
gi|380865455|sp|P16356.3|RPB1_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|351061691|emb|CCD69532.1| Protein AMA-1 [Caenorhabditis elegans]
Length = 1856
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 232/398 (58%), Positives = 289/398 (72%), Gaps = 18/398 (4%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
D +APLR V +VQFGIL P+EI+RMSV ++FPE E G+PKLGGLMDPRQGVIDR
Sbjct: 6 VDFQAPLRIVSRVQFGILGPEEIKRMSVAH--VEFPEVYENGKPKLGGLMDPRQGVIDRR 63
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TCAGN+T+CPGHFGH++LAKPVFH+GF+TKT+KILRCVCFYC +LL+ S P+V +
Sbjct: 64 GRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLE 123
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
++ KT S++R IYDLCK K++CEG E + D + + + K+ GGCGRYQP
Sbjct: 124 ILKKTGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPD-DPMNDGKKVAGGCGRYQP 182
Query: 184 NIRRSGLDLTAEW-KHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD--- 239
+ RR G+D+ AEW K+VNED+QE+KI LT + VL +Q +I G+D
Sbjct: 183 SYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQ------ITDEDILVIGMDPQF 236
Query: 240 LTAEWK-----HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V + + G DDLTHKL+DIIK N +L RNE++GAA HV
Sbjct: 237 ARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHV 296
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
+ +++++LQFHVATL DN +PGLP A QK G+PLK+IK RLKGKEGRIRGNLMGKRVDFS
Sbjct: 297 LTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFS 356
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVIT DPNL ID VGVPR+IAQN+TFPEIVTPFN+D
Sbjct: 357 ARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVD 394
>gi|156405|gb|AAA28126.1| RNA polymerase II [Caenorhabditis elegans]
Length = 1859
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 231/398 (58%), Positives = 288/398 (72%), Gaps = 18/398 (4%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
D +APLR V +VQFGIL P+EI+RMSV ++FPE E G+PKLGGLMDPRQGVIDR
Sbjct: 6 VDFQAPLRIVSRVQFGILGPEEIKRMSVAH--VEFPEVYENGKPKLGGLMDPRQGVIDRR 63
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TCAGN+T+CPGHFGH++LAKPVFH+GF+TKT+KILRCVCFYC +LL+ S P+V +
Sbjct: 64 GRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLE 123
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
++ KT S++R IYDLCK K++CEG E + D + + + K+ GGCGRYQP
Sbjct: 124 ILKKTGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPD-DPMNDGKKVAGGCGRYQP 182
Query: 184 NIRRSGLDLTAEW-KHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD--- 239
+ RR G+D+ AEW K+VNED+QE+KI LT + L +Q +I G+D
Sbjct: 183 SYRRVGIDINAEWKKNVNEDTQERKIMLTAERDLEVFQQ------ITDEDILVIGMDPQF 236
Query: 240 LTAEWK-----HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V + + G DDLTHKL+DIIK N +L RNE++GAA HV
Sbjct: 237 ARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHV 296
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
+ +++++LQFHVATL DN +PGLP A QK G+PLK+IK RLKGKEGRIRGNLMGKRVDFS
Sbjct: 297 LTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFS 356
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVIT DPNL ID VGVPR+IAQN+TFPEIVTPFN+D
Sbjct: 357 ARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVD 394
>gi|312076520|ref|XP_003140898.1| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1875
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 230/439 (52%), Positives = 285/439 (64%), Gaps = 104/439 (23%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
D +APLR VK+VQFGILSPDEI+RMS+ G I+F E E G+PKLGGLMDPRQGV+DR
Sbjct: 7 DFRAPLRTVKRVQFGILSPDEIKRMSI--GEIEFSEIYENGKPKLGGLMDPRQGVVDRRG 64
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RC TCAG++ +CPGHF HI+LAKPVFH+GF++KT+K+LRCVCFYCS+L+V P+V+++
Sbjct: 65 RCMTCAGSLADCPGHFAHIELAKPVFHIGFLSKTLKLLRCVCFYCSRLMVDKDSPRVKEL 124
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPN 184
+ KT G +RRR IY++CK K +CEGGDE+ + G ED
Sbjct: 125 LKKTAGNARRRLTVIYEICKSKTVCEGGDEL--HTVGGED-------------------- 162
Query: 185 IRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEW 244
E+S+ K+ GGCGRYQP+ +R G+D+ AEW
Sbjct: 163 ---------------GEESE--------------KEIKSGGCGRYQPSYKRVGIDIIAEW 193
Query: 245 K-HVNEDSQEKKIPLTGKGVL--------------------------------------- 264
K H+NED+QE+KI LT + L
Sbjct: 194 KKHINEDTQERKIVLTAERALEIFKSISDSDCLILGMDPRYARPDWMIAQVIPVPPLTVR 253
Query: 265 -----------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDND 313
DDLTHKL+DI+K NN+L RNE++GAA HV+AE++K+LQ+HVATL DN
Sbjct: 254 PAVVTFGSARNQDDLTHKLSDIVKTNNQLKRNEANGAAAHVLAEDVKLLQYHVATLIDNS 313
Query: 314 MPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVP 373
+PGLP A QK G+PLK+IK RLKGKEGRIRGNLMGKRVDFSARTVITPDPNL ID VGVP
Sbjct: 314 IPGLPAATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLPIDTVGVP 373
Query: 374 RSIAQNMTFPEIVTPFNMD 392
R+IAQNMTFPEIVTPFN+D
Sbjct: 374 RTIAQNMTFPEIVTPFNID 392
>gi|393905343|gb|EFO23174.2| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1870
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 230/439 (52%), Positives = 284/439 (64%), Gaps = 104/439 (23%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
D +APLR VK+VQFGILSPDEI+RMS+ G I+F E E G+PKLGGLMDPRQGV+DR
Sbjct: 7 DFRAPLRTVKRVQFGILSPDEIKRMSI--GEIEFSEIYENGKPKLGGLMDPRQGVVDRRG 64
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RC TCAG++ +CPGHF HI+LAKPVFH+GF++KT+K+LRCVCFYCS+L+V P+V+++
Sbjct: 65 RCMTCAGSLADCPGHFAHIELAKPVFHIGFLSKTLKLLRCVCFYCSRLMVDKDSPRVKEL 124
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPN 184
+ KT G +RRR IY++CK K +CEGGDE+ GG
Sbjct: 125 LKKTAGNARRRLTVIYEICKSKTVCEGGDEL-----------------HTVGG------- 160
Query: 185 IRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEW 244
ED +E + K+ GGCGRYQP+ +R G+D+ AEW
Sbjct: 161 ----------------EDGEESE-----------KEIKSGGCGRYQPSYKRVGIDIIAEW 193
Query: 245 K-HVNEDSQEKKIPLTGKGVL--------------------------------------- 264
K H+NED+QE+KI LT + L
Sbjct: 194 KKHINEDTQERKIVLTAERALEIFKSISDSDCLILGMDPRYARPDWMIAQVIPVPPLTVR 253
Query: 265 -----------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDND 313
DDLTHKL+DI+K NN+L RNE++GAA HV+AE++K+LQ+HVATL DN
Sbjct: 254 PAVVTFGSARNQDDLTHKLSDIVKTNNQLKRNEANGAAAHVLAEDVKLLQYHVATLIDNS 313
Query: 314 MPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVP 373
+PGLP A QK G+PLK+IK RLKGKEGRIRGNLMGKRVDFSARTVITPDPNL ID VGVP
Sbjct: 314 IPGLPAATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLPIDTVGVP 373
Query: 374 RSIAQNMTFPEIVTPFNMD 392
R+IAQNMTFPEIVTPFN+D
Sbjct: 374 RTIAQNMTFPEIVTPFNID 392
>gi|170587086|ref|XP_001898310.1| DNA-directed RNA polymerase II largest subunit [Brugia malayi]
gi|158594705|gb|EDP33289.1| DNA-directed RNA polymerase II largest subunit, putative [Brugia
malayi]
Length = 1943
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 228/439 (51%), Positives = 285/439 (64%), Gaps = 104/439 (23%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
D +APLR VK+VQFGILSPDEI+RMS+ G I+F E E G+PKLGGLMDPRQGV+DR
Sbjct: 80 DFRAPLRTVKRVQFGILSPDEIKRMSI--GEIEFSEIYENGKPKLGGLMDPRQGVVDRRG 137
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RC TCAG++ +CPGHF HI+LAKPVFH+GF++KT+K+LRCVCFYCS+L+V P+V+++
Sbjct: 138 RCMTCAGSLADCPGHFAHIELAKPVFHIGFLSKTLKLLRCVCFYCSRLMVDKDSPRVKEL 197
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPN 184
+ KT G +RRR A IY++CK K +CEGG+E+ GG
Sbjct: 198 LRKTAGNARRRLAVIYEICKSKTVCEGGNEL-----------------HAVGG------- 233
Query: 185 IRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEW 244
ED +E + ++ GGCGRYQP+ +R G+D+ AEW
Sbjct: 234 ----------------EDGEESE-----------REIKSGGCGRYQPSYKRVGIDIIAEW 266
Query: 245 K-HVNEDSQEKKIPLTGKGVL--------------------------------------- 264
K H+NED+QE+KI LT + L
Sbjct: 267 KKHINEDTQERKIVLTAERALEIFKSISDSDCLILGMDPRYARPDWMIAQVIPVPPLAVR 326
Query: 265 -----------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDND 313
DDLTHKL+D++K NN+L RNE++GAA HV+AE++K+LQ+HVATL DN
Sbjct: 327 PAVVTFGSARNQDDLTHKLSDVVKTNNQLKRNEANGAAAHVLAEDVKLLQYHVATLIDNS 386
Query: 314 MPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVP 373
+PGLP A QK G+PLK+IK RLKGKEGRIRGNLMGKRVDFSARTVITPDPNL ID VGVP
Sbjct: 387 IPGLPAATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLPIDTVGVP 446
Query: 374 RSIAQNMTFPEIVTPFNMD 392
R+IAQNMTFPEIVTPFN+D
Sbjct: 447 RTIAQNMTFPEIVTPFNID 465
>gi|340368153|ref|XP_003382617.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Amphimedon queenslandica]
Length = 1933
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 228/439 (51%), Positives = 283/439 (64%), Gaps = 102/439 (23%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVT-EGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DS APL+ VKKVQFGILS +EI+R SVT GI++P TMEGG+PK+GGLMDPRQGVIDR+
Sbjct: 6 DSSAPLKRVKKVQFGILSAEEIKRRSVTVPDGIRYPYTMEGGKPKMGGLMDPRQGVIDRA 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNM CPGHFGHI L KPVFHV F+TK +KI+RCVCFYCS+LL+ PKV+D
Sbjct: 66 SRCQTCAGNMNTCPGHFGHISLTKPVFHVCFMTKIVKIMRCVCFYCSRLLIDSDDPKVKD 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
++LKT+ +R +IY L + K IC+GG GAED N+
Sbjct: 126 ILLKTRTVPHKRLQYIYTLARVKRICDGGG------GGAEDKNTT--------------- 164
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAE 243
+ +D K GGCGRYQP +R+ GL++TAE
Sbjct: 165 ---------------MMDDP---------------KMMARGGCGRYQPKLRKIGLEITAE 194
Query: 244 WKHVNEDSQEKKIPLTGKGVL--------------------------------------- 264
WK +NE+SQE+KI ++ + VL
Sbjct: 195 WKEINEESQERKIVVSAERVLEIFKNMSDDDCRIIGIDPNYSRPDSMIITVLPVPPLPVR 254
Query: 265 -----------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDND 313
DDLTHKL+DI+K N +LI+NE +GAA+H+I E++KMLQFHVATL DN+
Sbjct: 255 PAVVMHGSARNQDDLTHKLSDIVKANEQLIKNEQNGAASHIIEEDLKMLQFHVATLKDNE 314
Query: 314 MPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVP 373
+PG+P+A+Q+ G+PLK+IK RLK KEGRIRGNLMGKRVDFSAR VITPDPNL IDQVGVP
Sbjct: 315 LPGMPKAVQRGGRPLKSIKQRLKSKEGRIRGNLMGKRVDFSARAVITPDPNLSIDQVGVP 374
Query: 374 RSIAQNMTFPEIVTPFNMD 392
R+IAQN+TFPE+VTPFN+D
Sbjct: 375 RTIAQNLTFPEVVTPFNID 393
>gi|402586258|gb|EJW80196.1| DNA-directed RNA polymerase [Wuchereria bancrofti]
Length = 400
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 229/440 (52%), Positives = 285/440 (64%), Gaps = 104/440 (23%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
D +APLR VK+VQFGILSPDEI+RMS+ G I+F E E G+PKLGGLMDPRQGV+DR
Sbjct: 6 VDFRAPLRTVKRVQFGILSPDEIKRMSI--GEIEFSEIYENGKPKLGGLMDPRQGVVDRR 63
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TCAG++ +CPGHF HI+LAKPVFH+GF++KT+K+LRCVCFYCS+L+V P+V++
Sbjct: 64 GRCMTCAGSLADCPGHFAHIELAKPVFHIGFLSKTLKLLRCVCFYCSRLMVDKDSPRVKE 123
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
++ KT G +RRR A IY++CK K +CEGG+E+ GG
Sbjct: 124 LLRKTAGNARRRLAVIYEICKSKTVCEGGNEL-----------------HAIGG------ 160
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAE 243
ED +E + K+ GGCGRYQP+ +R G+D+ AE
Sbjct: 161 -----------------EDGEESE-----------KEIKSGGCGRYQPSYKRIGIDIIAE 192
Query: 244 WK-HVNEDSQEKKIPLTGKGVL-------------------------------------- 264
WK H+NED+QE+KI LT + L
Sbjct: 193 WKKHINEDTQERKIVLTAERALEIFKSISDSDCLILGMDPRYARPDWMIAQVIPVPPLAV 252
Query: 265 ------------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDN 312
DDLTHKL+D++K NN+L RNE++GAA HV+AE++K+LQ+HVATL DN
Sbjct: 253 RPAVVTFGSARNQDDLTHKLSDVVKTNNQLKRNEANGAAAHVLAEDVKLLQYHVATLIDN 312
Query: 313 DMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGV 372
+PGLP A QK G+PLK+IK RLKGKEGRIRGNLMGKRVDFSARTVITPDPNL ID VGV
Sbjct: 313 SIPGLPAATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLPIDTVGV 372
Query: 373 PRSIAQNMTFPEIVTPFNMD 392
PR+IAQNMTFPEIVTPFN+D
Sbjct: 373 PRTIAQNMTFPEIVTPFNID 392
>gi|321451593|gb|EFX63195.1| hypothetical protein DAPPUDRAFT_335810 [Daphnia pulex]
Length = 713
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 232/394 (58%), Positives = 279/394 (70%), Gaps = 24/394 (6%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDR 62
+++K +R VK+VQFGILSPDEI R SVTEGGI PE EGG+ KLGGLMDPRQGVI+R
Sbjct: 6 SETKQTIRVVKRVQFGILSPDEIERQSVTEGGIIHPEIYDEGGKRKLGGLMDPRQGVINR 65
Query: 63 SSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVR 122
S+RC TC ++ ECPGHFGHIDLAKPV+H+GF+ KTIKILRCVCFYCSKLLVSP++P ++
Sbjct: 66 SARCTTCKRSINECPGHFGHIDLAKPVYHIGFLMKTIKILRCVCFYCSKLLVSPNNPSIK 125
Query: 123 DVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQ 182
+++ +KGQ R R A ++DLCKG NIC E+DI + GH GCGRYQ
Sbjct: 126 KILVISKGQPRTRMAHVHDLCKGINIC----EIDI-------------ETTGHVGCGRYQ 168
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLT-GKGVLLNKKQGHGGC---GRYQPNIRRSGL 238
P IRR GL+L EWKHV+ED QE + LT G+ + K C G R +
Sbjct: 169 PKIRRQGLELIGEWKHVDEDWQETNLVLTAGRVWEIFKHISDEDCLILGMDPKYARPEWM 228
Query: 239 DLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
+T +P G DDLT KLADI+K NNEL RN SGA H+I +N
Sbjct: 229 IITRLPVPPPAVRPAVAMP--GSARKQDDLTRKLADIVKANNELKRNVESGAVVHIIDKN 286
Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
I+MLQFHVAT+ +N + GLP A +SG+P+ +I ARL+GKEGRIRGNLMGKRVDFSARTV
Sbjct: 287 IEMLQFHVATMMNNGLKGLPVAQLESGQPIVSITARLEGKEGRIRGNLMGKRVDFSARTV 346
Query: 359 ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ITPDPNL IDQVGVPRSIAQNMTFPEIVT FN++
Sbjct: 347 ITPDPNLPIDQVGVPRSIAQNMTFPEIVTSFNIE 380
>gi|353231921|emb|CCD79276.1| putative dna-directed RNA polymerase II largest subunit
[Schistosoma mansoni]
Length = 1900
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 227/437 (51%), Positives = 288/437 (65%), Gaps = 93/437 (21%)
Query: 9 PLRCVKKVQFGILSPDEIRRMSVT-EGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQ 67
PLR V+ +QFGILSPDEI+ +SVT +GGIK+ ETMEGG+PKLGGLMDPRQG +DRSS CQ
Sbjct: 10 PLREVRALQFGILSPDEIKELSVTPDGGIKYAETMEGGKPKLGGLMDPRQGCVDRSSICQ 69
Query: 68 TCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLK 127
TC+G+++ CPGHFGH++LAKPVFH+GF+ KT+K+LRCVCFYCSK+LV ++++++ K
Sbjct: 70 TCSGSVSSCPGHFGHVELAKPVFHIGFLKKTMKVLRCVCFYCSKILVDVQSSRIQEILRK 129
Query: 128 TKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQG--HGGCGRYQPNI 185
TKG +RRR +F+Y+ CK ++ C D+ + +E+ SL +K H + +
Sbjct: 130 TKGDNRRRMSFMYEECKTRSECISNDD----QVQSENDVSLSSKVSFGVHKPLFFFVTTV 185
Query: 186 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK 245
+RSG CGRYQP RR+GL+LTAEWK
Sbjct: 186 KRSG------------------------------------CGRYQPRFRRNGLELTAEWK 209
Query: 246 HVNEDSQEKKIPLTGKGVL----------------------------------------- 264
VNE+SQE+KI LT + VL
Sbjct: 210 KVNEESQERKINLTAERVLEVFKRMSDEDCLSLGFDPRYARPDWMIATVLPVPPLCVRPA 269
Query: 265 ---------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
DDLTHKLADIIK NN+L R+E +GAA H+IAE+IKMLQFHV T+ DN++P
Sbjct: 270 VVMYGATRNQDDLTHKLADIIKANNQLRRDEQNGAAAHIIAEDIKMLQFHVTTMVDNEVP 329
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
GLP+A+QKSG+PLK+IK RLKGK GRIRGNLMGKRVDFSARTVIT DPNL +DQVGVPR+
Sbjct: 330 GLPKAIQKSGRPLKSIKQRLKGKAGRIRGNLMGKRVDFSARTVITADPNLNLDQVGVPRT 389
Query: 376 IAQNMTFPEIVTPFNMD 392
IAQN+T+PEIVT FN+D
Sbjct: 390 IAQNLTYPEIVTQFNID 406
>gi|324500036|gb|ADY40031.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 1840
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 222/391 (56%), Positives = 275/391 (70%), Gaps = 20/391 (5%)
Query: 7 KAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRC 66
+APLR +K+VQFGILSPDEI+ MSV E I+F +T E G PK GGLMDPRQGV+DR RC
Sbjct: 38 RAPLREIKRVQFGILSPDEIKDMSVCE--IEFSQTYEDGVPKRGGLMDPRQGVVDRRGRC 95
Query: 67 QTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVL 126
TC G +CPGHF HI LAKPVFHVG V+KT+K+LRCVCFYCS++LVS ++ +VR ++
Sbjct: 96 TTCCGGQADCPGHFAHITLAKPVFHVGLVSKTLKVLRCVCFYCSRVLVSKNNERVRRILS 155
Query: 127 KTKGQSRRRQAFIYDLCKGKNICEGGD-EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
KT G RRR IY LCK K C+ D E+DI ++ A+ CGRYQP+
Sbjct: 156 KTTGNPRRRFELIYALCKTKTACDDADEEVDIIEEYAK------------SACGRYQPSY 203
Query: 186 RRSGLDLTAEWK-HVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLDLT 241
RR+G+++TAEWK N++ QE K+ L+ + VL + K+ C P R +
Sbjct: 204 RRTGIEITAEWKRRANDEQQEHKLVLSAERVLEIFKRIADEDCIVLGMDPRFARPDWMII 263
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
E V + + G DDLTHKL+DI+ NN+L RNE +GAA HVIA+++K+
Sbjct: 264 QELP-VPPLAVRPAVATFGSARNQDDLTHKLSDIVNANNQLKRNERNGAAAHVIADDLKL 322
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+HVAT DN +PGLP A QK G+PLK++K RLKGKEGRIRGNLMGKRVDFSARTVITP
Sbjct: 323 LQYHVATFIDNSVPGLPTATQKGGRPLKSLKQRLKGKEGRIRGNLMGKRVDFSARTVITP 382
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPNL ID VGVPR+IAQNMTFPEIVTPFN+D
Sbjct: 383 DPNLPIDTVGVPRTIAQNMTFPEIVTPFNID 413
>gi|358337430|dbj|GAA28785.2| DNA-directed RNA polymerase II subunit RPB1 [Clonorchis sinensis]
Length = 1877
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/368 (57%), Positives = 278/368 (75%), Gaps = 11/368 (2%)
Query: 29 MSVT-EGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHFGHIDLAK 87
MSVT +GGIK+ ETMEGG+PK+GGLMDPRQG +DR S CQTC+GN++ CPGHFGH++LAK
Sbjct: 1 MSVTNDGGIKYAETMEGGKPKIGGLMDPRQGCVDRGSICQTCSGNVSNCPGHFGHVELAK 60
Query: 88 PVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKN 147
PVFH+GF+ KT+K+LRCVCF+CSK+LV P++++++ KTK +RRR F+Y+ CK +
Sbjct: 61 PVFHIGFMKKTLKLLRCVCFHCSKILVDVQSPQIQEILRKTKNDNRRRMMFMYEECKSRT 120
Query: 148 ICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKK 207
C ++ + G E+ ++L+NK + GCGRYQP RR GL+LTAEWK +NE+SQE+K
Sbjct: 121 ECLSNED----QIGGEN-DTLENKTK-RAGCGRYQPRFRRIGLELTAEWKKINEESQERK 174
Query: 208 IPLTGKGVL-LNKKQGHGGCGR--YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL 264
I LT + VL + K+ C + P R + V + + + G
Sbjct: 175 ITLTAERVLEVFKRISDEDCLSLGFDPRYARPDWMIITVLP-VPPLAVRPAVVMYGATRN 233
Query: 265 LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKS 324
DDLTHKLADIIK NN+L R+E +GAA+H++AE+I+MLQFHV T+TDND+PGLP+A+QKS
Sbjct: 234 QDDLTHKLADIIKANNQLRRDEQNGAASHILAEDIRMLQFHVTTMTDNDVPGLPKAIQKS 293
Query: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPE 384
G+PLK+IK RLKGK GRIRGNLMGKRVDFSARTVIT DPNL +DQVGVPR+IAQN+T+PE
Sbjct: 294 GRPLKSIKTRLKGKAGRIRGNLMGKRVDFSARTVITADPNLNLDQVGVPRTIAQNLTYPE 353
Query: 385 IVTPFNMD 392
VT FN+D
Sbjct: 354 NVTQFNID 361
>gi|321468698|gb|EFX79682.1| hypothetical protein DAPPUDRAFT_52186 [Daphnia pulex]
Length = 1047
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/394 (56%), Positives = 274/394 (69%), Gaps = 36/394 (9%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
+++K +R VKKVQ GILSPDEIR+ SVT GGIK+PE EGG+PKLGG+MDPRQGV +RS
Sbjct: 6 SETKPTIRVVKKVQLGILSPDEIRKQSVTAGGIKYPEIYEGGKPKLGGIMDPRQGVTNRS 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+RCQTC GNM ECPGHFGHIDLAKPVFHVGF KTI+ILRCVC+YCSKLLVSP++PK+++
Sbjct: 66 ARCQTCDGNMNECPGHFGHIDLAKPVFHVGFFEKTIEILRCVCYYCSKLLVSPNNPKLQE 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ LK++ Q +R A +++LCKGKNICEGGD++ G ++P + GHGGCGR QP
Sbjct: 126 IFLKSEDQPGKRMALVHELCKGKNICEGGDQI-----GEDEP--ITEDMVGHGGCGRSQP 178
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLDL 240
+I L++ A+WK+++ S KK+ LT + VL + K+ C P R
Sbjct: 179 SISNRQLEIIAKWKNLDIVSGAKKLVLTAEHVLAIFKRISDEECAILGMDPKYAR----- 233
Query: 241 TAEWKHVN--EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
EW ++ P G D LT KL DI+K NNEL RNE SGA +IA N
Sbjct: 234 -PEWMIISCLPVPPPNTRPPVMNGSEHDYLTRKLVDIVKVNNELQRNEQSGAEDPIIANN 292
Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
IKMLQF++A L++ +IK RL+GK+GRIRGNLMGK VDFSARTV
Sbjct: 293 IKMLQFNIAMLSN------------------SIKNRLEGKKGRIRGNLMGKLVDFSARTV 334
Query: 359 ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ITPDPNLRIDQVGVPR IAQNMTFPEIVT FN++
Sbjct: 335 ITPDPNLRIDQVGVPRIIAQNMTFPEIVTSFNIE 368
>gi|321468694|gb|EFX79678.1| hypothetical protein DAPPUDRAFT_304478 [Daphnia pulex]
Length = 1441
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/394 (56%), Positives = 274/394 (69%), Gaps = 36/394 (9%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
+++K +R VKKVQ GILSPDEIR+ SVT GGIK+PE EGG+PKLGG+MDPRQGV +RS
Sbjct: 6 SETKPTIRVVKKVQLGILSPDEIRKQSVTAGGIKYPEIYEGGKPKLGGIMDPRQGVTNRS 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+RCQTC GNM ECPGHFGHIDLAKPVFHVGF KTI+ILRCVC+YCSKLLVSP++PK+++
Sbjct: 66 ARCQTCDGNMNECPGHFGHIDLAKPVFHVGFFEKTIEILRCVCYYCSKLLVSPNNPKLQE 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ LK++ Q +R A +++LCKGKNICEGGD++ G ++P + GHGGCGR QP
Sbjct: 126 IFLKSEDQPGKRMALVHELCKGKNICEGGDQI-----GEDEP--ITEDMVGHGGCGRSQP 178
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLDL 240
+I L++ A+WK+++ S KK+ LT + VL + K+ C P R
Sbjct: 179 SISNRQLEIIAKWKNLDIVSGAKKLVLTAEHVLAIFKRISDEECAILGMDPKYAR----- 233
Query: 241 TAEWKHVN--EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
EW ++ P G D LT KL DI+K NNEL RNE SGA +IA N
Sbjct: 234 -PEWMIISCLPVPPPNTRPPVMNGSEHDYLTRKLVDIVKVNNELQRNEQSGAEDPIIANN 292
Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
IKMLQF++A L++ +IK RL+GK+GRIRGNLMGK VDFSARTV
Sbjct: 293 IKMLQFNIAMLSN------------------SIKNRLEGKKGRIRGNLMGKLVDFSARTV 334
Query: 359 ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ITPDPNLRIDQVGVPR IAQNMTFPEIVT FN++
Sbjct: 335 ITPDPNLRIDQVGVPRIIAQNMTFPEIVTSFNIE 368
>gi|321468525|gb|EFX79509.1| hypothetical protein DAPPUDRAFT_319347 [Daphnia pulex]
Length = 1459
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/393 (54%), Positives = 267/393 (67%), Gaps = 21/393 (5%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
++++ +R VK+VQFGILSP EI RMSVTEGGIK+P+ EGG+PKLGGLMDPRQG ++RS
Sbjct: 6 SETQPTIRKVKRVQFGILSPHEILRMSVTEGGIKYPDIYEGGKPKLGGLMDPRQGAVNRS 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+RC+TC + ECPGHFGHI L KPVFH+GF+ KTIKIL CVC+YCSKLLVSP++P++R+
Sbjct: 66 ARCETCHRTINECPGHFGHIKLVKPVFHIGFLMKTIKILGCVCYYCSKLLVSPNNPEIRE 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
++ K++G R+R A +YD+CK NICE N + + GH GCGRYQP
Sbjct: 126 ILDKSEGHPRKRMAHVYDICKRINICE---------------NDIGEEITGHIGCGRYQP 170
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLN-KKQGHGGC---GRYQPNIRRSGLD 239
IRR GL + EWKHV+EDSQE I LT VL N K+ C G R +
Sbjct: 171 RIRRQGLGMIGEWKHVDEDSQETTIVLTADRVLENFKRISDEDCAILGMDPKYARPDWMI 230
Query: 240 LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENI 299
LT V S + + DD+T KL DI+K NNEL SG +I + I
Sbjct: 231 LTC--LPVPPPSVRPAVVTRDFSIRQDDITDKLVDIVKANNELELAIRSGENDEIIDQKI 288
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
+LQ H+ T+ N P + KSG+ +K+IK RL+G+EGRIRGNLMGKRVDFSART+I
Sbjct: 289 NLLQSHIGTMMMNHSKRFPFSHHKSGQIIKSIKTRLEGREGRIRGNLMGKRVDFSARTII 348
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TPDPNLRIDQVGVPR IAQNMTFPEIVTP N++
Sbjct: 349 TPDPNLRIDQVGVPRIIAQNMTFPEIVTPVNIE 381
>gi|4808166|emb|CAB42797.1| largest subunit of the RNA polymerase II complex [Drosophila
pseudoobscura]
Length = 1811
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/366 (58%), Positives = 243/366 (66%), Gaps = 103/366 (28%)
Query: 78 GHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQA 137
GHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK++++V+K+KGQ R+R A
Sbjct: 1 GHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVVKSKGQPRKRLA 60
Query: 138 FIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEW 196
++YDLCKGK ICEGG++MD+ KD + DP
Sbjct: 61 YVYDLCKGKTICEGGEDMDLTKDNQQPDP------------------------------- 89
Query: 197 KHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKI 256
NKK GHGGCG YQP+IRR+GLDL+AEWKH NEDSQEKKI
Sbjct: 90 ---------------------NKKPGHGGCGHYQPSIRRTGLDLSAEWKHPNEDSQEKKI 128
Query: 257 PLTGKGVL--------------------------------------------------LD 266
++ + V D
Sbjct: 129 VVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQD 188
Query: 267 DLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGK 326
DLTHKL+DIIK NNEL +NE+SGAA HVI ENIKMLQFHVATL DNDMPG+PRAMQKSGK
Sbjct: 189 DLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKSGK 248
Query: 327 PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIV 386
PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN+TFPE+V
Sbjct: 249 PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELV 308
Query: 387 TPFNMD 392
TPFN+D
Sbjct: 309 TPFNID 314
>gi|321468524|gb|EFX79508.1| hypothetical protein DAPPUDRAFT_319346 [Daphnia pulex]
Length = 878
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/391 (53%), Positives = 267/391 (68%), Gaps = 17/391 (4%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
++++ +R VK+VQFGILSP EI RMSVTEGGIK+P+ EGG+PKLGGLMDPRQG ++RS
Sbjct: 6 SETQPTIRKVKRVQFGILSPHEILRMSVTEGGIKYPDIYEGGKPKLGGLMDPRQGAVNRS 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+RC+TC + ECPGHFGHI L KPVFH+GF+ KTIKIL CVC+YCSKLLVSP++P++R+
Sbjct: 66 ARCETCHRTINECPGHFGHIKLVKPVFHIGFLMKTIKILGCVCYYCSKLLVSPNNPEIRE 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
++ K++G R+R A +YD+CK NICE N + + GH GCGRYQP
Sbjct: 126 ILDKSEGHPRKRMAHVYDICKRINICE---------------NDIGEEITGHIGCGRYQP 170
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLN-KKQGHGGCGRYQPNIRRSGLD-LT 241
IRR GL + EWKHV+EDSQE I LT VL N K+ C + + + D +
Sbjct: 171 RIRRQGLGMIGEWKHVDEDSQETTIVLTADRVLENFKRISDEDCAILGMDPKYARPDWMI 230
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V S + + DD+T KL DI+K NNEL SG +I + I +
Sbjct: 231 LTCLPVPPPSVRPAVVTRDFSIRQDDITDKLVDIVKANNELELAIRSGENDEIIDQKINL 290
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ H+ T+ N P + KSG+ +K+IK RL+G+EGRIRGNLMGKRVDFSART+ITP
Sbjct: 291 LQSHIGTMMMNHSKRFPFSHHKSGQIIKSIKTRLEGREGRIRGNLMGKRVDFSARTIITP 350
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPNLRIDQVGVPR IAQNMTFPEIVTP N++
Sbjct: 351 DPNLRIDQVGVPRIIAQNMTFPEIVTPVNIE 381
>gi|321450862|gb|EFX62718.1| hypothetical protein DAPPUDRAFT_67765 [Daphnia pulex]
Length = 1138
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/391 (53%), Positives = 265/391 (67%), Gaps = 27/391 (6%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
+DSKA +R VKKVQ GILSPDEIRRMSVTEGGI P EGG+ KLGGLMDPRQGV+ R
Sbjct: 6 SDSKATIRLVKKVQLGILSPDEIRRMSVTEGGIIHPYIYEGGKRKLGGLMDPRQGVVIRK 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
++CQTC G + ECPGHFGHI+LAKPV+HVGF KTI+ILRCVC+YCSKLLV+P++PK ++
Sbjct: 66 AKCQTCDGTINECPGHFGHINLAKPVYHVGFFEKTIEILRCVCYYCSKLLVNPNNPKFKE 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+++K+K Q + A +YDLCKG NICE G+ GGCGRY P
Sbjct: 126 ILVKSKDQPLKCMAHVYDLCKGINICEVGN----------------------GGCGRYLP 163
Query: 184 NIRR-SGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLDLT 241
IRR G + EWKHV+EDSQEKKI LT + V + K+ C + + + D
Sbjct: 164 KIRRLKGFKINGEWKHVDEDSQEKKIVLTAERVWEIFKRISDEDCAILGMDPKYARPDWM 223
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
+ + G + +DLT KLADI++ NN+L+ SG +++ KM
Sbjct: 224 IVTCLPVPPPAVRPAQIIGMDQIENDLTMKLADIVRANNKLLGAVQSG---EILSGKTKM 280
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ H+A++ D+ LP +S P ++IK RL+G++GRIRGNLMGKRVDF+ARTVITP
Sbjct: 281 LQLHIASMMDSKSTLLPAYYHESTLPTQSIKDRLEGRDGRIRGNLMGKRVDFAARTVITP 340
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPNLRIDQVG+PRSIAQNMTFPE V PFN++
Sbjct: 341 DPNLRIDQVGIPRSIAQNMTFPERVAPFNIE 371
>gi|339252982|ref|XP_003371714.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
gi|316967997|gb|EFV52341.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
Length = 1816
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 202/388 (52%), Positives = 270/388 (69%), Gaps = 27/388 (6%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
VK +QFGILSP+E R MSV E I +PE E G+PKLGGLMDPRQGVIDR SRCQTCAG
Sbjct: 14 VKSIQFGILSPEECRAMSVCE--ILYPEINENGKPKLGGLMDPRQGVIDRRSRCQTCAGT 71
Query: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQS 132
+ +CPGHFGH++L+KPV+HVGF+ K +K+LRCVCFYCS+LLV+ + KV + KTK
Sbjct: 72 IADCPGHFGHLELSKPVYHVGFLPKVLKVLRCVCFYCSRLLVNKNSTKVEAALAKTKYSC 131
Query: 133 RRRQAFIYDLCKGKNICEG----GDEMDINK-DGAEDPNSLQNKKQGHGGCGRYQPNIRR 187
R+R IYDLCK K ICEG +++ +++ + E+ + + GCGRYQP+ +R
Sbjct: 132 RKRLTTIYDLCKVKRICEGIEKSPEQLAVDRGELVEENGEDSQQAKAPTGCGRYQPSYKR 191
Query: 188 SGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKK---QGHGGCGRYQPNIRRSGLDLTAEW 244
GL++ AEWK NE+ QEKK+ L+ + VL K + P R +W
Sbjct: 192 VGLEVIAEWKKTNEEMQEKKMTLSAERVLEILKGISDEDAITLGFHPKYSR------PDW 245
Query: 245 KHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQF 304
+ + +P+ V +T A N+L +NE +G+ATH++AE++++LQ+
Sbjct: 246 MII------QVLPVPPLSVRPAVVTFGNA-----RNQLRQNEQTGSATHIVAEDLRLLQY 294
Query: 305 HVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
HVATL DN++PGLP+A KSG+PLK++K RLKGKEGRIRGNLMGKRVDFS RTVITPDPN
Sbjct: 295 HVATLFDNEIPGLPKATHKSGRPLKSLKQRLKGKEGRIRGNLMGKRVDFSGRTVITPDPN 354
Query: 365 LRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
L +D++GVP++IAQN+T PE+VTPFN+D
Sbjct: 355 LALDELGVPKTIAQNLTVPELVTPFNLD 382
>gi|330795314|ref|XP_003285719.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
gi|325084350|gb|EGC37780.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
Length = 1755
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 211/391 (53%), Positives = 260/391 (66%), Gaps = 10/391 (2%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A LR VKKVQFGILSPDEIR MSV I+ PET E G+PK+GGL+DP G ID++ R
Sbjct: 8 SSAELRKVKKVQFGILSPDEIRNMSVAR--IEHPETYENGKPKIGGLLDPAMGTIDKTQR 65
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
CQTC+G M ECPGHFGHI+LAKPVFH+GF+ +KILRCVCF+CSKLL S R
Sbjct: 66 CQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCFHCSKLLTDTSEYSFRQ-A 124
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICE-GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPN 184
LK K Q R A + ++CK K +C GG+E + D ++ L +K HGGCG P
Sbjct: 125 LKIKNQKHRLNAVV-EICKNKKVCAIGGNEEEEEHDLSKTDEEL-DKAVKHGGCGNVLPK 182
Query: 185 IRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL--LNKKQGHGGCGR-YQPNIRRSGLDLT 241
I + L + E+K V ++S EKK L+ + VL L + + P+ ++ +
Sbjct: 183 ITKEDLKIIVEFKDVTDESIEKKSVLSAERVLNILKRIKDEDSIAMGINPDWAKADW-MV 241
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
A V I + DDLTHKLADI+K N EL R E +GA H+I E +
Sbjct: 242 ATVLPVPPPPVRPSIMMDTSTRGEDDLTHKLADIVKANKELQRQEKNGAPAHIITEATQF 301
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQFHVAT DN++PGLP+A Q+SG+PLK+I+ RLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 302 LQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITA 361
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPNL IDQVGVPRSIA N+T+PE VTPFN+D
Sbjct: 362 DPNLSIDQVGVPRSIALNLTYPETVTPFNID 392
>gi|520503|gb|AAC83397.1| RNA polymerase II, largest subunit, partial [Artemia salina]
Length = 1341
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/359 (58%), Positives = 239/359 (66%), Gaps = 99/359 (27%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPVFHVGF+TKTIKI+RCVCFYCSKLLVSP++PK+++V+LKTKGQ R+R A IYD
Sbjct: 1 HIELAKPVFHVGFLTKTIKIIRCVCFYCSKLLVSPNNPKIKEVILKTKGQPRKRLAAIYD 60
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
LCKGKNICEGGDEMD+ +D DL+
Sbjct: 61 LCKGKNICEGGDEMDMARDQE----------------------------DLSL------- 85
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 261
SQ KK+ GHGGCGRYQP IRR GLDLTAEWKHVNEDSQE+K+ LT +
Sbjct: 86 -SQAKKV-------------GHGGCGRYQPKIRRIGLDLTAEWKHVNEDSQERKLTLTAE 131
Query: 262 -------------------------------------------GVLL-------DDLTHK 271
V++ DDLT+K
Sbjct: 132 RVHEIFKHISDEECHILGMDPKFARPDWMILTVIPVPPLNVRPTVIMFGSAKGHDDLTYK 191
Query: 272 LADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAI 331
L DIIK NNELIRNE SGAA H+I ENI+MLQFHVAT+ DNDMPGL RAMQKSG+P+K+I
Sbjct: 192 LGDIIKANNELIRNEESGAAAHIIHENIRMLQFHVATMVDNDMPGLQRAMQKSGRPVKSI 251
Query: 332 KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN 390
K+RLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN+TFPE+VTP N
Sbjct: 252 KSRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEMVTPLN 310
>gi|66815437|ref|XP_641735.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
gi|166202448|sp|P35084.2|RPB1_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III subunit A
gi|60469758|gb|EAL67745.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
Length = 1727
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 209/390 (53%), Positives = 257/390 (65%), Gaps = 9/390 (2%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A LR VK+VQFGILSPDEIR MSV ++ PET E G+PK GGL+DP G ID++ R
Sbjct: 8 SSAELRKVKRVQFGILSPDEIRNMSVAR--VEHPETYENGKPKAGGLLDPAMGTIDKTQR 65
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
CQTC+G M ECPGHFGHI+LAKPVFH+GF+ +KILRCVC++CSKLL + R
Sbjct: 66 CQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDTNEHSFRQ-A 124
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
LK + Q R A + D CK K +C G E + D ++ L +K HGGCG P I
Sbjct: 125 LKIRNQKHRLNAVV-DCCKNKKVCAIGGEEEEEHDLSKTDEEL-DKPVKHGGCGNVLPKI 182
Query: 186 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGR---YQPNIRRSGLDLTA 242
+ L + E+K V ++S EKK L+ + VL K+ R P+ R+ + A
Sbjct: 183 TKEDLKIIVEFKDVTDESIEKKSVLSAERVLNILKRIKDEDSRAMGINPDWARADW-MIA 241
Query: 243 EWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKML 302
V I + DDLTHKLADI+K N EL R E +GA H+IAE + L
Sbjct: 242 TVLPVPPPPVRPSIMMDTSTRGEDDLTHKLADIVKANRELQRQEKNGAPAHIIAEATQFL 301
Query: 303 QFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD 362
QFHVAT DN++PGLP+A Q+SG+PLK+I+ RLKGKEGRIRGNLMGKRVDFSARTVIT D
Sbjct: 302 QFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITAD 361
Query: 363 PNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PNL IDQVGVPRSIA N+T+PE VTPFN+D
Sbjct: 362 PNLSIDQVGVPRSIALNLTYPETVTPFNID 391
>gi|313247739|emb|CBY15868.1| unnamed protein product [Oikopleura dioica]
Length = 523
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/398 (49%), Positives = 256/398 (64%), Gaps = 44/398 (11%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
+S LR ++ VQFGILSPDEI+RMS + K RPK+ G++DPRQGV+DR
Sbjct: 5 TESSVTLRRIRHVQFGILSPDEIKRMSERDDYGK-----ASNRPKMDGILDPRQGVVDRF 59
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNM +CPGHF HI+LAKPVFH+GF KT++ LRCVCF+CSK+LV ++ K+
Sbjct: 60 SRCQTCAGNMNDCPGHFAHIELAKPVFHIGFFNKTLRALRCVCFFCSKMLVHKNNQKMAS 119
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
++ +TK Q R+R +Y LC+G+ + H GCGR+QP
Sbjct: 120 ILARTKSQPRKRLDGVYVLCRGEGVIP------------------------HNGCGRFQP 155
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---L 240
+ RR GL +TA WK VN+D+QEK + +T + VL K G I G+D
Sbjct: 156 SYRRDGLTITATWKKVNDDAQEKTVEMTAEKVLEIFK------GISDEEIEMLGMDPEYA 209
Query: 241 TAEWK-----HVNEDSQEKKIPLTGKGV-LLDDLTHKLADIIKCNNELIRNESSGAATHV 294
W V + + + G G+ DD+THK DIIK NN + +NE+ GAA HV
Sbjct: 210 RPAWMIITVLPVAPLAVRPSVVMGGSGLRSQDDVTHKYCDIIKINNSIRKNEAHGAAPHV 269
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
IA+ +K+LQFH T+ DN P P+A QKSG+PLK+I RLK KEGR+RGNLMGKRVDFS
Sbjct: 270 IADEVKLLQFHCITIMDNTSPSFPKACQKSGRPLKSISERLKAKEGRVRGNLMGKRVDFS 329
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVIT DPNL ++QVG+PR+IA N+T+PEIVT FN+D
Sbjct: 330 ARTVITGDPNLNVNQVGIPRTIASNLTYPEIVTAFNID 367
>gi|281203888|gb|EFA78084.1| RNA polymerase II largest subunit [Polysphondylium pallidum PN500]
Length = 2159
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/403 (49%), Positives = 257/403 (63%), Gaps = 25/403 (6%)
Query: 2 AMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVID 61
++ S A +R VK+VQFGILSP++IR MSV ++ PET E G+PK+GGL+DP G ID
Sbjct: 3 SVQHSTAEVRKVKRVQFGILSPEDIRDMSV--ALVEHPETYENGKPKIGGLVDPHMGTID 60
Query: 62 RSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKV 121
++ +C TC+G M ECPGHFGHI+LAKPVFH+GF+ +KIL+CVC++CSKLLV
Sbjct: 61 KTQKCATCSGTMAECPGHFGHIELAKPVFHIGFINTVLKILKCVCYHCSKLLVDTDDIHF 120
Query: 122 RDVVLKTKGQSRRRQAFIYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCG 179
R LK K RR A + D+CK K +C G++ D D ++ L K + GCG
Sbjct: 121 RQA-LKIKNPKRRLNAVV-DICKNKKVCAVAKGNQEDQVDDLSKTDEELDRKPKA-DGCG 177
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD 239
P I + L E+K V +D+ EKK L+ + V H R + + R+ +
Sbjct: 178 NVLPKITKEELKFVVEFKDVQDDTVEKKSVLSAERV-------HSILKRIRDDDARA-MG 229
Query: 240 LTAEWKHVN----------EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSG 289
L EW + I + DDLTHKLADI+K N EL + E +G
Sbjct: 230 LNPEWARPDWMVITVLPVPPPPVRPSIMMDTASRGEDDLTHKLADIVKANRELRKQEKNG 289
Query: 290 AATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGK 349
A H+I E + LQFHVAT DN++PGLP+A Q+SG+PLK+I+ RLKGKEGRIRGNLMGK
Sbjct: 290 APAHIITEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGK 349
Query: 350 RVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
RVDFSARTVIT DPNL IDQVGVPRSIA N+T+PE VTPFN+D
Sbjct: 350 RVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNID 392
>gi|77176709|gb|ABA64469.1| DNA-dependent RNA polymerase II largest subunit [Glaucocystis
nostochinearum]
Length = 1852
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/436 (47%), Positives = 258/436 (59%), Gaps = 104/436 (23%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A LR V VQFGIL PDEIRRMSV + I++PE E GRPKLGGLMDPR G IDR +
Sbjct: 10 SSAELRKVSVVQFGILGPDEIRRMSVAK--IEYPECFENGRPKLGGLMDPRMGSIDRQFK 67
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
CQTCAG+M+ECPGHFGH++LAKPV H+GF+T +KILRCVCF+CSKLL S + R+ +
Sbjct: 68 CQTCAGSMSECPGHFGHLELAKPVLHIGFMTTILKILRCVCFHCSKLLCDKSDIRFRNAL 127
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
K ++R R + D+C+GK+ CEGGDE+D N
Sbjct: 128 RLKKPETRLRA--VMDICRGKSQCEGGDELDENA-------------------------- 159
Query: 186 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK 245
EK+I G+ KK HGGCG + P I R GL LTAE+
Sbjct: 160 -------------------EKEIGPDGE-----KKSRHGGCGNFVPKIIREGLKLTAEFT 195
Query: 246 HVNEDSQEKKIPLTGK-------------------------------------------G 262
V +++ EK+ L+ +
Sbjct: 196 KVQDETIEKRQVLSAEKVHQIFKRISDEDCRSMGLRPEWARPDWMIVTILPVPPPPVRPS 255
Query: 263 VLLD-------DLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+++D DLTHKLADI+K N L R E +GA H+I+E ++LQFHVAT DN++P
Sbjct: 256 IMMDSTARGEDDLTHKLADIVKANMNLKRQEMNGAPAHIISEFQQLLQFHVATYVDNEIP 315
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G P+A Q+SG+PLK+I RLKGKEGRIRGNLMGKRVDFSARTVIT DPNL IDQVG PRS
Sbjct: 316 GQPQACQRSGRPLKSISQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLGIDQVGCPRS 375
Query: 376 IAQNMTFPEIVTPFNM 391
IA N+T+PEIVT FNM
Sbjct: 376 IALNLTYPEIVTKFNM 391
>gi|321468705|gb|EFX79689.1| hypothetical protein DAPPUDRAFT_244676 [Daphnia pulex]
Length = 392
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 205/376 (54%), Positives = 251/376 (66%), Gaps = 33/376 (8%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDR 62
+++K +R VK+VQFGILSPDEI R SVTEGGI PE EGG+ KLGGLMDPRQGVI+R
Sbjct: 37 SETKQTIRVVKRVQFGILSPDEIERQSVTEGGIIHPEIYDEGGKRKLGGLMDPRQGVINR 96
Query: 63 SSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVR 122
S+RC TC ++ ECPGHFGHIDLAKPV+H+GF+ KTIKILRC VSP++P ++
Sbjct: 97 SARCTTCKRSINECPGHFGHIDLAKPVYHIGFLMKTIKILRC---------VSPNNPSIK 147
Query: 123 DVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQ 182
+++ +KGQ R R A ++DLCKG NIC E+DI + GH GCGRYQ
Sbjct: 148 KILVISKGQPRTRMAHVHDLCKGINIC----EIDI-------------ETTGHVGCGRYQ 190
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLT-GKGVLLNKKQGHGGC---GRYQPNIRRSGL 238
P IRR GL+L EWKHV+ED QE + LT G+ + K C G R +
Sbjct: 191 PKIRRQGLELIGEWKHVDEDWQETNLVLTAGRVWEIFKHISDEDCLILGMDPKYARPEWM 250
Query: 239 DLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
+T +P G DDLT KLADI+K NNEL RN SGA H+I +N
Sbjct: 251 IITRLPVPPPAVRPAVAMP--GSARKQDDLTRKLADIVKANNELKRNVESGAVVHIIDKN 308
Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
I+MLQFHVAT+ +N + GLP A +SG+P+ +I ARL+GKEGRIRGNLMGKRVDFSARTV
Sbjct: 309 IEMLQFHVATMMNNGLKGLPVAQLESGQPIVSITARLEGKEGRIRGNLMGKRVDFSARTV 368
Query: 359 ITPDPNLRIDQVGVPR 374
ITPDPNL IDQVG +
Sbjct: 369 ITPDPNLPIDQVGATK 384
>gi|68300854|gb|AAY89364.1| RNA polymerase IV largest subunit [Glaucocystis nostochinearum]
Length = 526
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 210/436 (48%), Positives = 259/436 (59%), Gaps = 104/436 (23%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A LR V VQFGIL PDEIRRMSV + I++PE E GRPKLGGLMDPR G IDR +
Sbjct: 10 SSAELRKVSVVQFGILGPDEIRRMSVAK--IEYPECFENGRPKLGGLMDPRMGSIDRQFK 67
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
CQTCAG+M+ECPGHFGH++LAKPVFH+GF+T +KILRCVCF+CSKLL S + R+ +
Sbjct: 68 CQTCAGSMSECPGHFGHLELAKPVFHIGFMTTILKILRCVCFHCSKLLCDKSDIRFRNAL 127
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
K ++R R + D+C+GK+ CEGGDE+D N
Sbjct: 128 RLKKPETRLRA--VMDICRGKSQCEGGDELDENA-------------------------- 159
Query: 186 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK 245
EK+I G+ KK HGGCG + P I R GL LTAE+
Sbjct: 160 -------------------EKEIGPDGE-----KKSRHGGCGNFVPKIIREGLKLTAEFT 195
Query: 246 HVNEDSQEKKIPLTGK-------------------------------------------G 262
V +++ EK+ L+ +
Sbjct: 196 KVQDETIEKRQVLSAEKVHQIFKRISDEDCRSMGLRPEWARPDWMIVTILPVPPPPVRPS 255
Query: 263 VLLD-------DLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+++D DLTHKLADI+K N L R E +GA H+I+E ++LQFHVAT DN++P
Sbjct: 256 IMMDSTARGEDDLTHKLADIVKANMNLKRQEMNGAPAHIISEFQQLLQFHVATYVDNEIP 315
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G P+A Q+SG+PLK+I RLKGKEGRIRGNLMGKRVDFSARTVIT DPNL IDQVG PRS
Sbjct: 316 GQPQACQRSGRPLKSISQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLGIDQVGCPRS 375
Query: 376 IAQNMTFPEIVTPFNM 391
IA N+T+PEIVT FNM
Sbjct: 376 IALNLTYPEIVTKFNM 391
>gi|520509|gb|AAA50225.1| RNA polymerase II, largest subunit, partial [Crassostrea gigas]
Length = 1340
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 190/361 (52%), Positives = 234/361 (64%), Gaps = 100/361 (27%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPVFH+GF+ KTIKILRCVCF+CSKLLV P++PK+++++ K+K R+R +YD
Sbjct: 1 HIELAKPVFHIGFLVKTIKILRCVCFFCSKLLVDPTNPKIKEILSKSKAYPRKRLVAVYD 60
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
LCK + +CEGGDEMD N K G E
Sbjct: 61 LCKSRKVCEGGDEMD-------------NAKLG--------------------------E 81
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 261
++QE ++K+GHGGCGRYQP I+R+GL+L AEWK NEDSQEKKI LT
Sbjct: 82 ETQEG-----------DQKKGHGGCGRYQPKIKRTGLELIAEWKDTNEDSQEKKIVLTAD 130
Query: 262 -------------------------------------------GVLL-------DDLTHK 271
V++ DDLTHK
Sbjct: 131 RVHEIFKRISDDECQVLGMDHRYSRPDWMIVTVMPVPPLAVRPAVVMFGSARNQDDLTHK 190
Query: 272 LADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAI 331
LADIIK NN+L RNE +GAA+H+I+E++KMLQ+HVAT TDN++PGLP+A+QKSG+PLK++
Sbjct: 191 LADIIKANNQLRRNEQNGAASHIISEDMKMLQYHVATFTDNELPGLPKAVQKSGRPLKSV 250
Query: 332 KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
K RLKGKEGR+RGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPE+VTPFN+
Sbjct: 251 KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPELVTPFNI 310
Query: 392 D 392
D
Sbjct: 311 D 311
>gi|74221116|dbj|BAE42062.1| unnamed protein product [Mus musculus]
Length = 321
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 187/306 (61%), Positives = 229/306 (74%), Gaps = 17/306 (5%)
Query: 8 APLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQ 67
PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+ RCQ
Sbjct: 2 CPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQ 61
Query: 68 TCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLK 127
TCAGNMTECPGHFGHI+LA+PVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D++ K
Sbjct: 62 TCAGNMTECPGHFGHIELAEPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAK 121
Query: 128 TKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQPNI 185
+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCG+YQP I
Sbjct: 122 SKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGQYQPRI 180
Query: 186 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLDLTA 242
RRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 181 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR------P 234
Query: 243 EWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
EW V S + + G DDLTHKLADI+K NN+L RNE +GAA HVIAE
Sbjct: 235 EWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAE 294
Query: 298 NIKMLQ 303
+ LQ
Sbjct: 295 KLLNLQ 300
>gi|19112465|ref|NP_595673.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe
972h-]
gi|548817|sp|P36594.1|RPB1_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|256599715|pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599727|pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|5055|emb|CAA39916.1| RNA polymerase II large subunit [Schizosaccharomyces pombe]
gi|6018696|emb|CAB57941.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe]
Length = 1752
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 192/398 (48%), Positives = 256/398 (64%), Gaps = 27/398 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S PLR V++VQFGILSP+EIR MSV + I+FPETM+ G RP++GGL+DPR G IDR
Sbjct: 9 SSVPLRRVEEVQFGILSPEEIRSMSVAK--IEFPETMDESGQRPRVGGLLDPRLGTIDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M +CPGHFGHI+LAKPVFH+GF++K KIL CVC+ C KL + S+PK D
Sbjct: 67 FKCQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPKFND 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICE-----GGDEMDINKDGAEDPNSLQNKKQGHGGC 178
+ + R ++++CK K +C+ G D D++ A GHGGC
Sbjct: 127 T--QRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSA---------NMGHGGC 175
Query: 179 GRYQPNIRRSGLDLTAEWKHVNEDSQ--EKKI--PLTGKGVLLN-KKQGHGGCGRYQPNI 233
G QP IR+ GL L WK ++S EK++ PL + + + G +
Sbjct: 176 GAAQPTIRKDGLRLWGSWKRGKDESDLPEKRLLSPLEVHTIFTHISSEDLAHLGLNEQYA 235
Query: 234 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATH 293
R + +T + T +G DDLTHKL+DIIK N + R E GA H
Sbjct: 236 RPDWMIITVLPVPPPSVRPSISVDGTSRGE--DDLTHKLSDIIKANANVRRCEQEGAPAH 293
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
+++E ++LQFHVAT DN++ G P+A+QKSG+PLK+I+ARLKGKEGR+RGNLMGKRVDF
Sbjct: 294 IVSEYEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDF 353
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
SARTVIT DPNL +D++GVPRSIA+ +T+PE VTP+N+
Sbjct: 354 SARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNI 391
>gi|194389262|dbj|BAG65619.1| unnamed protein product [Homo sapiens]
Length = 1935
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 194/381 (50%), Positives = 235/381 (61%), Gaps = 104/381 (27%)
Query: 62 RSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKV 121
R QT + + PG+ + HVGF+ KT+K+LRCVCF+CSKLLV ++PK+
Sbjct: 39 RKGERQTAVTSAVQEPGYLF-------IRHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKI 91
Query: 122 RDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRY 181
+D++ K+KGQ ++R +YDLCKG NICEGG+EMD NK G E P
Sbjct: 92 KDILAKSKGQPKKRLTHVYDLCKGNNICEGGEEMD-NKFGVEQPEG-------------- 136
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
+ED L K++GHGGCGRYQP IRRSGL+L
Sbjct: 137 ------------------DED--------------LTKEKGHGGCGRYQPRIRRSGLELY 164
Query: 242 AEWKHVNEDSQEKKI------------------------------------------PLT 259
AEWKHVNEDSQEKKI PL+
Sbjct: 165 AEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLS 224
Query: 260 GKGVLL--------DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
+ ++ DDLTHKLADI+K NN+L RNE +GAA HVIAE++K+LQFHVAT+ D
Sbjct: 225 VRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVD 284
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
N++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFSARTVITPDPNL IDQVG
Sbjct: 285 NELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVG 344
Query: 372 VPRSIAQNMTFPEIVTPFNMD 392
VPRSIA NMTF EIVTPFN+D
Sbjct: 345 VPRSIAANMTFAEIVTPFNID 365
>gi|392596906|gb|EIW86228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coniophora puteana RWD-64-598 SS2]
Length = 1746
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 200/402 (49%), Positives = 254/402 (63%), Gaps = 25/402 (6%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVI 60
A S AP+R VK+VQFG+LSP+EI+ SV + I+ PE M+ RPKLGGLMDPR G I
Sbjct: 6 FAYSAAPVRRVKEVQFGVLSPEEIKAYSVAK--IEHPEVMDEATHRPKLGGLMDPRMGTI 63
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+ +CQTC M+ECPGHFGHI+LA+PVFH GF+ K KIL C+C C KL S P
Sbjct: 64 DRNFKCQTCGEGMSECPGHFGHIELARPVFHPGFINKVKKILECICVNCGKLKADISDPT 123
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
D + + ++R A ++ CK KN+CE + + D AE+P K+GHGGCG
Sbjct: 124 FADRIRHIR-DPKKRFAAVWAFCKAKNVCESDEPKEEGNDDAEEP------KKGHGGCGH 176
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEK-----KIPLTGKGVLLNKK----QGHGGCGRYQP 231
QP +R+ GL L +K +D + K K T V K Q G
Sbjct: 177 KQPQVRKEGLKLFVNYKADKDDGEGKSQQIDKRLFTPSEVYTTFKKMVDQDLHLVGLSDE 236
Query: 232 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLL--DDLTHKLADIIKCNNELIRNESSG 289
R + LT V I + G GV+ DDLT+KL DIIK + + R E G
Sbjct: 237 YARPEWMILTV--MPVPPPPVRPSIAVDG-GVMRSEDDLTYKLGDIIKASANVRRCEQEG 293
Query: 290 AATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGK 349
A HVI E ++LQFHVAT DND+ G+P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGK
Sbjct: 294 APAHVITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGK 353
Query: 350 RVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RVDFSARTVIT DPNL++D+VGVPRSIA N+T+PE VTP+N+
Sbjct: 354 RVDFSARTVITGDPNLQLDEVGVPRSIAMNLTYPERVTPYNI 395
>gi|328867419|gb|EGG15801.1| RNA polymerase II largest subunit [Dictyostelium fasciculatum]
Length = 1701
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 185/368 (50%), Positives = 235/368 (63%), Gaps = 21/368 (5%)
Query: 36 IKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFV 95
I+ PET E G+PKLGGL+DP G ID+ +C TC+G M ECPGHFGH++LAKPVFH+GF+
Sbjct: 6 IEHPETYENGKPKLGGLVDPHMGTIDKHQKCATCSGTMAECPGHFGHLELAKPVFHIGFI 65
Query: 96 TKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICE-GGDE 154
+KI+RCVCF+CSKLL + R LK + RR A I D+CK K +C+ G +E
Sbjct: 66 DTVLKIVRCVCFHCSKLLTDTNDSHFRQA-LKIRNPKRRLNA-ILDICKTKKVCDIGQEE 123
Query: 155 MDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKG 214
D D ++ L K HGGCG QP I + L E+K V +++ EKK L+ +
Sbjct: 124 KDREHDLSKTDEELDRKPHSHGGCGNLQPKITKEELKFIVEFKDVADETVEKKSILSAER 183
Query: 215 VLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKH---VNEDSQEKKIPLTGKGVLLD----- 266
V H R + RS + L +W + P +++D
Sbjct: 184 V-------HNILKRISDDDARS-MGLNPDWARPDWMVVTVLPVPPPPVRPSIMMDTASRG 235
Query: 267 --DLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKS 324
DLTHKLADI+K N EL + E +G H+I E + LQFHVAT DN++PGLP+A Q+S
Sbjct: 236 EDDLTHKLADIVKANRELKKQEKNGVPAHIITEATQFLQFHVATYVDNEIPGLPQAQQRS 295
Query: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPE 384
G+PLK+I+ RLKGKEGRIRGNLMGKRVDFSARTVIT DPNL IDQVGVPRSIA N+T+PE
Sbjct: 296 GRPLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPE 355
Query: 385 IVTPFNMD 392
VTPFN+D
Sbjct: 356 TVTPFNID 363
>gi|344303415|gb|EGW33664.1| hypothetical protein SPAPADRAFT_134208 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1748
Score = 356 bits (914), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 197/396 (49%), Positives = 257/396 (64%), Gaps = 20/396 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+LSP+EIR +SV + I++PETM+ +P+ GGL DPR G IDR+
Sbjct: 8 SSAPLRSVKEVQFGLLSPEEIRAISVAK--IEYPETMDQTTKKPREGGLNDPRLGSIDRN 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RCQTC +M ECPGHFGHIDLAKPVFH+GF+ K K+ CVC +C KLL+ S+P +
Sbjct: 66 FRCQTCGEDMAECPGHFGHIDLAKPVFHIGFIAKIKKVCECVCMHCGKLLLDESNPAMAQ 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGG-DEMDINKDGAEDPNSLQNKKQGHGGCGRYQ 182
+ K + RR A ++ +CK K +CE E D+ DG PN Q K GGCG Q
Sbjct: 126 AI-KIRDPKRRFNA-VWSVCKTKMVCETDVTEEDMQVDGK--PN--QQKPTTRGGCGHTQ 179
Query: 183 PNIRRSGLDLTAEWKH---VNEDSQEKKIPLTGKGVL-LNKKQGHGGC---GRYQPNIRR 235
P IRR GL L WKH +E+ Q ++ L+ +L + K C G + R
Sbjct: 180 PTIRRDGLKLWGTWKHNKNFDENEQPERRLLSPSEILNVFKHINSEDCYKLGFNEDYARP 239
Query: 236 SGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVI 295
+ +T T +G DDLT KLAD+IK N + R E+ G+ HVI
Sbjct: 240 EWMLITVLPVPPPPVRPSIAFNDTARGE--DDLTFKLADVIKANINVQRLETDGSPQHVI 297
Query: 296 AENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 355
+E +LQFHVAT DND+ G P+A+QK+G+P+K+I+ARLKGKEGR+RGNLMGKRVDFSA
Sbjct: 298 SEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSA 357
Query: 356 RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RTVI+ DPNL +DQVGVP SIA+ +++PEIVTP+N+
Sbjct: 358 RTVISGDPNLDLDQVGVPISIAKTLSYPEIVTPYNI 393
>gi|449524332|ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Cucumis sativus]
Length = 1853
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 189/398 (47%), Positives = 256/398 (64%), Gaps = 20/398 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A + V+ VQFGILSPDEIR+MSV + I+ ET E G+PK+ GL DPR G IDR +
Sbjct: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKVAGLSDPRLGTIDRKMK 65
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+TC NM ECPGHFGH++LAKP+FH+GF+ + I+R VCF CSK+LV PK + +
Sbjct: 66 CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQAL 125
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
++R R+ I D CK K CEGGDE+D+ ++ P K+ GGCG QP I
Sbjct: 126 RIKNPKNRLRK--ILDACKNKTKCEGGDEIDVQGQDSDQP-----VKKSRGGCGAQQPKI 178
Query: 186 RRSGLDLTAEWKHV---NEDSQ------EKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRR 235
G+ +TAE+K N+D + E+K LT + VL + K+ C N +
Sbjct: 179 SIEGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKY 238
Query: 236 SGLD-LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
+ D + + + + + DDLTH+LA II+ N L R E +G+ H+
Sbjct: 239 ARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHI 298
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I+E ++LQFH+AT DN++PGLPRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFS
Sbjct: 299 ISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 358
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDP + ID++GVP SIA N+T+PE VTP+N++
Sbjct: 359 ARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIE 396
>gi|449456849|ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 189/398 (47%), Positives = 256/398 (64%), Gaps = 20/398 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A + V+ VQFGILSPDEIR+MSV + I+ ET E G+PK+ GL DPR G IDR +
Sbjct: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKVAGLSDPRLGTIDRKMK 65
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+TC NM ECPGHFGH++LAKP+FH+GF+ + I+R VCF CSK+LV PK + +
Sbjct: 66 CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQAL 125
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
++R R+ I D CK K CEGGDE+D+ ++ P K+ GGCG QP I
Sbjct: 126 RIKNPKNRLRK--ILDACKNKTKCEGGDEIDVQGQDSDQP-----VKKSRGGCGAQQPKI 178
Query: 186 RRSGLDLTAEWKHV---NEDSQ------EKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRR 235
G+ +TAE+K N+D + E+K LT + VL + K+ C N +
Sbjct: 179 SIEGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKY 238
Query: 236 SGLD-LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
+ D + + + + + DDLTH+LA II+ N L R E +G+ H+
Sbjct: 239 ARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHI 298
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I+E ++LQFH+AT DN++PGLPRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFS
Sbjct: 299 ISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 358
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDP + ID++GVP SIA N+T+PE VTP+N++
Sbjct: 359 ARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIE 396
>gi|210075525|ref|XP_501909.2| YALI0C16566p [Yarrowia lipolytica]
gi|199425290|emb|CAG82229.2| YALI0C16566p [Yarrowia lipolytica CLIB122]
Length = 1750
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 193/396 (48%), Positives = 250/396 (63%), Gaps = 24/396 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APLR V++VQFG+LSP+E++ MSV + I+FPETM+ R P++GGL DPR G IDR+
Sbjct: 9 SSAPLRTVEEVQFGLLSPEEVKAMSVAK--IEFPETMDETRQRPRVGGLNDPRLGTIDRN 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M ECPGHFGHI+LAKPVFH+GF+ K KI VCF+C K+L+ ++ +
Sbjct: 67 FKCQTCGEGMAECPGHFGHIELAKPVFHIGFIAKIKKICESVCFHCGKVLLDENNKQFAQ 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + + RR A ++ LCK K +CE + + G K HGGCG QP
Sbjct: 127 AI-RIRDPKRRFNA-VWSLCKTKMVCETDVPTEDDGSGV--------VKHSHGGCGNIQP 176
Query: 184 NIRRSGLDLTAEWKHVNE-----DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPN---IRR 235
+RR GL L WK DS EK++ + + + K C R N R
Sbjct: 177 TVRRDGLKLWGTWKRGKNGDDMGDSPEKRLLTPAEILNVFKHISSEDCQRLGLNEDYARP 236
Query: 236 SGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVI 295
L +T I T +G DDLT+KLADI+K N + R E GA HV+
Sbjct: 237 EWLIITTLPVPPPPVRPSIAINDTARGE--DDLTYKLADILKANANVQRCEQEGAPAHVV 294
Query: 296 AENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 355
E +LQ+HVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSA
Sbjct: 295 NEFESLLQYHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSA 354
Query: 356 RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RTVIT DPNL +DQVGVPRSIA+ +T+PEIVTPFN+
Sbjct: 355 RTVITGDPNLELDQVGVPRSIARTLTYPEIVTPFNI 390
>gi|393247601|gb|EJD55108.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Auricularia delicata TFB-10046 SS5]
Length = 1775
Score = 353 bits (906), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 198/399 (49%), Positives = 257/399 (64%), Gaps = 18/399 (4%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVI 60
A S AP+R VK+VQFGILSP+EI+ SV + I+FPE M+ G RPK GGLMDPR G I
Sbjct: 6 FAFSAAPVRQVKEVQFGILSPEEIKAYSVAK--IEFPEVMDETGQRPKQGGLMDPRMGTI 63
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+ +CQTC M ECPGHFGHI+LA+PVFHVGF+ K KIL C+C C KL S P
Sbjct: 64 DRNFKCQTCGEGMAECPGHFGHIELARPVFHVGFLVKVKKILECICVNCGKLKADTSDPN 123
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNS-LQNKKQGHGGCG 179
D V + ++R A +++ CK K +C E D KD ++ N+ L K+GHGGCG
Sbjct: 124 FADKVRHVR-DPKQRMAIVWNHCKSKMVC----ETDEPKDEDQEANAELAEIKKGHGGCG 178
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDS--QEKKIPLTGKGVLLNKK---QGHGGCGRYQPNIR 234
QP IR+ GL L +K ++ Q+K++ + + KK G + R
Sbjct: 179 HVQPLIRKEGLKLFLVYKKSKDEDEMQDKRMFMPAEVHNTLKKIPDSDLALLGLSEAYAR 238
Query: 235 RSGLDLTAEWKHVNEDSQEKKIPLTGKGVLL-DDLTHKLADIIKCNNELIRNESSGAATH 293
+ LT V I + G + DDLT+KL DI+K + + R E GA H
Sbjct: 239 PDWMILTV--LPVPPPPVRPSIAVDGGAMRSEDDLTYKLGDILKASMAVRRCEQEGAPAH 296
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
VI ++ ++LQFHVAT DND+ G+P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDF
Sbjct: 297 VITDHEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 356
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
SARTVIT DPNL +DQVGVPRSIA +T+PE VTP+N++
Sbjct: 357 SARTVITGDPNLELDQVGVPRSIAMTLTYPERVTPYNIE 395
>gi|409051067|gb|EKM60543.1| hypothetical protein PHACADRAFT_246551 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1753
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 195/402 (48%), Positives = 249/402 (61%), Gaps = 23/402 (5%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVI 60
A S AP+R VK+VQFGILSP+EI+ SV + I+ PE M+ +PK+GGLMDPR G I
Sbjct: 6 FAYSAAPIRKVKEVQFGILSPEEIKAYSVAK--IEHPEVMDETTHKPKIGGLMDPRLGTI 63
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+ +CQTC M+ECPGHFGHI+LA+PVFH GFV K KIL C+C C +L S P
Sbjct: 64 DRNFKCQTCGEGMSECPGHFGHIELARPVFHPGFVVKVKKILECICVNCGRLKADISDPT 123
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
D + + R Q +++ CKGK ICE + D N + D K+GHGGCG
Sbjct: 124 FADRIRHVRDPKARMQV-VWNYCKGKMICEPDEPRDENDNMEND-----EPKRGHGGCGA 177
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDL 240
QP IR+ GL L ++K ++ +E K L L + + + P+ L L
Sbjct: 178 AQPQIRKEGLKLFVQYKRSKDEDEEVKT-LQPDKRLFPPHEVYNALKKI-PDSDLHLLGL 235
Query: 241 T-----AEWKHVNEDSQEKKIPLTGKGV------LLDDLTHKLADIIKCNNELIRNESSG 289
+ EW + V DDLT+KL DIIK + + R E G
Sbjct: 236 SDEYARPEWMILTVLPVPPPPVRPSIAVDGGTMRSEDDLTYKLGDIIKASANVRRCEQEG 295
Query: 290 AATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGK 349
A HVI E ++LQFHVAT DND+ G+P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGK
Sbjct: 296 APAHVINEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGK 355
Query: 350 RVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RVDFSARTVIT DPNL +D+VGVPRSIA N+TFPE VTP+N+
Sbjct: 356 RVDFSARTVITGDPNLELDEVGVPRSIAMNLTFPERVTPYNI 397
>gi|302696011|ref|XP_003037684.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
gi|300111381|gb|EFJ02782.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
Length = 1750
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 196/402 (48%), Positives = 254/402 (63%), Gaps = 29/402 (7%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVI 60
A S AP+R VK+VQFGILSP+EI+ SV + I+FPE + G R K GG+ DPR G I
Sbjct: 6 FAYSAAPVRKVKEVQFGILSPEEIKANSVAK--IEFPEINDEGTHRLKTGGVNDPRMGTI 63
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+ +CQTC M+ECPGHFGHI+LA+PVFH GF+ K KIL C+C C KL S P
Sbjct: 64 DRNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADISDPS 123
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
D + + + R A ++ CKGK +CE D ++G ED +K+GHGGCG
Sbjct: 124 FADRIRHVR-DPKHRLAAVWAYCKGKMMCETDDP---KEEGQED----HEEKKGHGGCGH 175
Query: 181 YQPNIRRSGLDLTAEWKHV-NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD 239
QP IR+ GL + ++K ++D EK++ + + KK + ++R GL
Sbjct: 176 IQPVIRKEGLKMFVQYKKAKDDDDSEKRLIMPSEVYTTFKKMS-------EDDLRLLGLS 228
Query: 240 ---LTAEWKHVNEDSQEK-----KIPLTGKGV-LLDDLTHKLADIIKCNNELIRNESSGA 290
EW + I + G DDLT+KL +IIK + + R E GA
Sbjct: 229 EEYARPEWMILTVLPVPPPPVRPSIAMDGGAQKSEDDLTYKLIEIIKASGNVRRCEQEGA 288
Query: 291 ATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
HV+ E ++LQFHVAT DND+ G+P+AMQKSG+P+KAI+ARLKGKEGR+RGNLMGKR
Sbjct: 289 PAHVVNEFEQLLQFHVATYMDNDIAGIPQAMQKSGRPIKAIRARLKGKEGRLRGNLMGKR 348
Query: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VDFSARTVIT DPNL +DQVGVPRSIA N+TFPE VTP+N+D
Sbjct: 349 VDFSARTVITGDPNLELDQVGVPRSIAMNLTFPERVTPYNID 390
>gi|386683448|gb|AFJ19492.1| DNA-directed RNA polymerase II subunit [Peltigera malacea]
Length = 1737
Score = 351 bits (900), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 195/407 (47%), Positives = 260/407 (63%), Gaps = 33/407 (8%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQG 58
+ S APLR ++++QFG+LSP+EI+ MSV I++PETM+ RP+ GL DPR G
Sbjct: 4 LTFQPSSAPLRSIQEIQFGLLSPEEIKNMSVAP--IEYPETMDEANQRPRHMGLADPRLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
IDR+ +C TC NM+ECPGHFGHI+LA PVFHVGF+TK K+L VC C K+L+ S+
Sbjct: 62 SIDRAIKCGTCDENMSECPGHFGHIELAVPVFHVGFMTKKKKLLETVCHNCGKILLDESN 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGC 178
++ L+ + RR A I+ CK K +C D M + DG P+ Q K HGGC
Sbjct: 122 ADFKN-ALRFRDPKRRFDA-IWKACKPKMVC---DMMPVADDGI--PDKSQEPKHDHGGC 174
Query: 179 GRYQPNIRRSGLDLTAEWK--HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY--QPNIR 234
G QP IR+ GL LT WK +ED Q++K P+T + L R+ I+
Sbjct: 175 GNIQPEIRKEGLKLTGTWKARKEDEDPQDEKRPITPQNAL--------NIFRHISSEEIQ 226
Query: 235 RSGLDLT---AEWKHVN-----EDSQEKKIPLTGKGVLL--DDLTHKLADIIKCNNELIR 284
R GL++ EW + I + G + DDLT+KL DII+ N +
Sbjct: 227 RMGLNVDYARPEWMIITVLPVPPPPVRPSIAVDGGNGMRGEDDLTYKLGDIIRANGNVRT 286
Query: 285 NESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRG 344
E+ G+ HV+AE ++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RG
Sbjct: 287 CEAEGSPAHVVAEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRG 346
Query: 345 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 347 NLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 393
>gi|367011663|ref|XP_003680332.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
gi|359747991|emb|CCE91121.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
Length = 1727
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 196/401 (48%), Positives = 252/401 (62%), Gaps = 25/401 (6%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQG 58
+A S APLR VK+VQFG+ SP+E+R +SV + I+FPETM+ R K+GGL DPR G
Sbjct: 2 VAQQYSSAPLRTVKEVQFGLFSPEEVRAISVAK--IRFPETMDETQTRAKIGGLNDPRLG 59
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
IDR+ +CQTC M ECPGHFGHIDLAKPVFH+GF+TK K+ CVC +C KLL+ +
Sbjct: 60 SIDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHIGFITKIKKVCECVCMHCGKLLLDDHN 119
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGC 178
++R K K +R A I+ LCK K ICE D+ + EDP L ++ GGC
Sbjct: 120 EQMRQAC-KIKDSKKRFNA-IWTLCKTKMICES----DVPSE--EDPTKLISR----GGC 167
Query: 179 GRYQPNIRRSGLDLTAEWKHVNE--DSQEKKIPLTGKGVLLN-----KKQGHGGCGRYQP 231
G QP +R+ GL L WK D +E + + +LN K+ G +
Sbjct: 168 GNAQPTVRKDGLKLVGSWKKEKNTGDPEEPEQRILTMEEILNIFKHISKEDSNRLGFNEE 227
Query: 232 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAA 291
R + LT + +G DDLT KLADI+K N L E +GA
Sbjct: 228 FARPEWMILTVLPVPPPPVRPSISFNESQRGE--DDLTFKLADILKANISLETLEHNGAP 285
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
H I E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRV
Sbjct: 286 HHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRV 345
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DFSARTVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 346 DFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNID 386
>gi|321468709|gb|EFX79693.1| hypothetical protein DAPPUDRAFT_244672 [Daphnia pulex]
Length = 920
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 191/391 (48%), Positives = 245/391 (62%), Gaps = 49/391 (12%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
+DSKA +R VKKVQ GILSPDEIRRMSVTEGGI P EGG+ KLGGLMDPRQGV+ R
Sbjct: 45 SDSKATIRLVKKVQLGILSPDEIRRMSVTEGGIIHPYIYEGGKRKLGGLMDPRQGVVIRK 104
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
++CQTC G + ECPGHFGHI+LAKPV+H V+P++PK ++
Sbjct: 105 AKCQTCDGTINECPGHFGHINLAKPVYH----------------------VNPNNPKFKE 142
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+++K+K Q + A +YDLCKG NICE G+ GGCGRY P
Sbjct: 143 ILVKSKDQPLKCMAHVYDLCKGINICEVGN----------------------GGCGRYLP 180
Query: 184 NIRR-SGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLDLT 241
IRR G + EWKHV+EDSQEKKI LT + V + K+ C + + + D
Sbjct: 181 KIRRLKGFKINGEWKHVDEDSQEKKIVLTAERVWEIFKRISDEDCAILGMDPKYARPDWM 240
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
+ + G + +DLT KLADI++ NN+L+ SG +++ KM
Sbjct: 241 IVTCLPVPPPAVRPAQIIGMDQIENDLTMKLADIVRANNKLLGAVQSG---EILSGKTKM 297
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ H+A++ D+ LP +S P ++IK RL+G++GRIRGNLMGKRVDF+ARTVITP
Sbjct: 298 LQLHIASMMDSKSTLLPAYYHESTLPTQSIKDRLEGRDGRIRGNLMGKRVDFAARTVITP 357
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPNLRIDQVG+PRSIAQNMTFPE V PFN++
Sbjct: 358 DPNLRIDQVGIPRSIAQNMTFPERVAPFNIE 388
>gi|255579596|ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis]
gi|223529812|gb|EEF31747.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 191/404 (47%), Positives = 253/404 (62%), Gaps = 22/404 (5%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
M S A + V+ VQFGILSPDEIR+MSV + I+F ET E G+PK GGL D R G I
Sbjct: 3 MRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEFSETTERGKPKPGGLSDLRLGTI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR +C+TC NM ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+ LK K R + I D CK K CEGGD++D++ ++P K+ GGCG
Sbjct: 121 FKQ-ALKIKNPKNRLKK-ILDACKNKTKCEGGDDIDVHSQDTDEP-----VKKSRGGCGA 173
Query: 181 YQPNIRRSGLDLTAEWK---HVNEDSQ------EKKIPLTGKGVL-LNKKQGHGGCGR-- 228
QP + G+ + AE+K N+D + E+K LT + VL + K+ C
Sbjct: 174 QQPRMTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLG 233
Query: 229 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESS 288
+ P R + + + + + DDLTH+LA II+ N L + E
Sbjct: 234 FNPKYARPDW-MILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKG 292
Query: 289 GAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMG 348
GA H+I+E ++LQFHVAT DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMG
Sbjct: 293 GAPAHIISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 352
Query: 349 KRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
KRVDFSARTVITPDPN+ IDQ+GVP SIA N+T+PE VTP+N++
Sbjct: 353 KRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIE 396
>gi|448082723|ref|XP_004195204.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
gi|359376626|emb|CCE87208.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
Length = 1758
Score = 350 bits (898), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 194/397 (48%), Positives = 255/397 (64%), Gaps = 25/397 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+LSP+E+R +SV + I+FPET++ RP+ GGL DPR G IDR+
Sbjct: 8 SSAPLRAVKEVQFGLLSPEEVRAISVAK--IEFPETIDQTTKRPREGGLNDPRLGSIDRN 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC+ +MTECPGHFGHI+LAKPVFH+GF+ K K+ C+C +C KLL+ ++P +
Sbjct: 66 FKCQTCSEDMTECPGHFGHIELAKPVFHIGFIAKIKKVCECICMHCGKLLLDETNPAMAQ 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ K + +R A ++ LCK K ICE + N DPNS QG GGCG QP
Sbjct: 126 AI-KIRDPKKRFNA-VWSLCKAKMICEADVLSNEN-----DPNSAP-VTQGRGGCGHTQP 177
Query: 184 NIRRSGLDLTAEW---KHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD 239
IRR GL L W K+ E+ Q ++ LT +L + K C R N +
Sbjct: 178 TIRRDGLKLWGTWKQNKNFEENEQPERRLLTPSEILSVFKHISPEDCFRLGFNEDYA--- 234
Query: 240 LTAEWKHVNEDS-----QEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW + + I DDLT KLADI+K N + R E G+ HV
Sbjct: 235 -RPEWMLITVLAVPPPPVRPSIAFNDTARGEDDLTFKLADILKANINVQRLEMDGSPQHV 293
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I+E +LQFHVAT DND+ G P+A+QK+G+P+K+I+ARLKGKEGR+RGNLMGKRVDFS
Sbjct: 294 ISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFS 353
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
ARTVI+ DPNL +DQVGVP SIA+ +++PEIVTP+N+
Sbjct: 354 ARTVISGDPNLDLDQVGVPISIAKTLSYPEIVTPYNI 390
>gi|395326417|gb|EJF58827.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Dichomitus squalens LYAD-421 SS1]
Length = 1749
Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 191/401 (47%), Positives = 250/401 (62%), Gaps = 24/401 (5%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVI 60
A S AP+R V++VQFGILSP+EI+ SV + I+ PE M+ +PK+GGLMDPR G I
Sbjct: 6 FAYSAAPVRKVREVQFGILSPEEIKAYSVAK--IEHPEVMDETTHKPKMGGLMDPRMGTI 63
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+ +CQTC M+ECPGHFGHI+LA+PVFH GF+ K KIL C+C C +L S P
Sbjct: 64 DRNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGRLKADSSDPA 123
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
D + + R QA +++ CK K ICE + D N+ G +D K+GHGGCG
Sbjct: 124 FADRIRHVRDPKARMQA-VWNYCKSKMICEPDEPKDENEGGDQD-----EPKKGHGGCGA 177
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD 239
QP IR+ GL L ++K ++ + L L + + + + ++ GL
Sbjct: 178 QQPLIRKEGLKLFVQYKRGKDEDES----LQPDKRLFPPHEVYTALKKISESDLHLLGLS 233
Query: 240 LT---AEWKHVNEDSQEKKIPLTGKGV------LLDDLTHKLADIIKCNNELIRNESSGA 290
+ EW + V DDLT+KL DIIK + + R E GA
Sbjct: 234 VDYARPEWMILTVLPVPPPPVRPSIAVDGGTMRSEDDLTYKLGDIIKASANVRRCEQEGA 293
Query: 291 ATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
HVI E ++LQFHVAT DND+ G+P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKR
Sbjct: 294 PAHVINEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKR 353
Query: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
VDFSARTVIT DPNL +D+VGVPRSIA N+TFPE VTP+N+
Sbjct: 354 VDFSARTVITGDPNLELDEVGVPRSIAMNLTFPERVTPYNI 394
>gi|168053159|ref|XP_001779005.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669567|gb|EDQ56151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1646
Score = 350 bits (897), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 192/404 (47%), Positives = 254/404 (62%), Gaps = 23/404 (5%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDR 62
A S A L VK VQFGI+SPDEIR+MSV I+ ET + G+PK+GGL DPR G IDR
Sbjct: 5 FAFSPADLARVKTVQFGIISPDEIRQMSVCL--IESSETYDRGKPKMGGLSDPRLGTIDR 62
Query: 63 SSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVR 122
++C+TCAG+M ECPGHFGH++LAKP+FH+GF+ + ILRCVC CS+ L + +
Sbjct: 63 HTKCETCAGSMAECPGHFGHLELAKPMFHIGFLKTVLSILRCVCHNCSRCLADEEDHRFK 122
Query: 123 DVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDIN--KDGAEDPNSLQNKKQGHGGCGR 180
+ + R + D CK K C+ GDE+D N + G E KK+ HGGCG
Sbjct: 123 QA--RKVRNPKHRLKKVLDCCKSKTKCDAGDELDENDTRYGEE-----TEKKKSHGGCGA 175
Query: 181 YQPNIRRSGLDLTAEWKHVNE--DSQEKKIP--------LTGKGVL-LNKKQGHGGCGRY 229
QP G+ L AE+K + D Q++ +P LT + VL + K+ C
Sbjct: 176 QQPKTTIDGMKLVAEFKASRKKGDEQDQHMPEPVERKQQLTAEKVLSILKRISDEDCAIL 235
Query: 230 QPNIRRSGLD-LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESS 288
N + + D + + + + + DDLTH+LA II+ NN L + E +
Sbjct: 236 GLNPKFARPDWMILQALPIPPPPVRPSVMMDSSARSEDDLTHQLAMIIRHNNNLKKQEQN 295
Query: 289 GAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMG 348
GA TH+I E ++LQFH+AT DND+PG PRA Q+SG+P+K+I ARLK KEGRIRGNLMG
Sbjct: 296 GAPTHIINEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICARLKAKEGRIRGNLMG 355
Query: 349 KRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
KRVDFSARTVITPDPN+ ID++GVP SIA N+T+PE VTP+NM+
Sbjct: 356 KRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNME 399
>gi|152060506|sp|A5DCV3.2|RPB1_PICGU RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
Length = 1579
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 192/395 (48%), Positives = 256/395 (64%), Gaps = 22/395 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+LSP+E+R +SV + I++PETM+ RP+ GGL DPR G IDR+
Sbjct: 8 SSAPLRSVKEVQFGLLSPEEVRAISVAK--IEYPETMDQATKRPREGGLNDPRLGSIDRN 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC +M ECPGHFGHI+LAKPVFH+GF+ K K+ CVC +C KLL+ S+P +
Sbjct: 66 FKCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDESNPAMAQ 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + + +R A +++LCKGK ICE D+ +D E + K+ GGCG QP
Sbjct: 126 AI-RIRDPKKRFNA-VWNLCKGKMICEA----DVLQDDGE---GNEPKRTSRGGCGHTQP 176
Query: 184 NIRRSGLDLTAEW---KHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPN---IRRS 236
+R+ GL L W K+ +E Q ++ LT +L + K C R N R
Sbjct: 177 VVRKDGLKLWGTWKQNKNYDETEQPERRLLTPSEILNVFKHINSEDCVRLGFNEDYARPE 236
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ +T T +G DDLT KLAD+IK N + R E G+ HVI+
Sbjct: 237 WMLITVLPVPPPPVRPSIAFNDTARGE--DDLTFKLADVIKANINVQRLELDGSPQHVIS 294
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFHVAT DND+ G P+A+QK+G+P+K+I+ARLKGKEGR+RGNLMGKRVDFSAR
Sbjct: 295 EFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSAR 354
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
TVI+ DPNL +DQVGVP SIA+ +T+PEIVTP+N+
Sbjct: 355 TVISGDPNLDLDQVGVPISIARTLTYPEIVTPYNI 389
>gi|409082995|gb|EKM83352.1| hypothetical protein AGABI1DRAFT_65857 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1785
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 197/396 (49%), Positives = 254/396 (64%), Gaps = 17/396 (4%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVI 60
A S AP+R VK+VQFGILSP+EI+ SV + I+ PE M+ +PK+GGLMDPR G I
Sbjct: 6 FAYSSAPIRKVKEVQFGILSPEEIKATSVAK--IEHPEVMDEATHKPKMGGLMDPRMGTI 63
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+ +CQTC M+ECPGHFGHI+LA+PVFH GF+ K KIL C+C C KL S P
Sbjct: 64 DRNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADTSDPN 123
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
D + + +S+ R A ++ CK K +CE DI +DG DP + + KK GHGGCG
Sbjct: 124 FADKIRHIR-ESKARLAVVWAHCKAKTVCEPD---DIKEDGV-DPEADEPKK-GHGGCGH 177
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGG----CGRYQPNIRRS 236
QP +R+ GL L ++K +D K +T V K+ G R
Sbjct: 178 IQPQVRKEGLKLFVQYKKTKDDDDPDKRLITPSEVYTVFKKMTDSDLHLLGLSDEYARPE 237
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLL-DDLTHKLADIIKCNNELIRNESSGAATHVI 295
+ LT V I + G + DDLT+KL DIIK + + R E GA HVI
Sbjct: 238 WMILTV--MPVPPPPVRPSIAVDGGAMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVI 295
Query: 296 AENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 355
+E ++LQFHVAT DND+ G+P+A+QKSG+P+KA++ARLKGKEGR+RGNLMGKRVDFSA
Sbjct: 296 SEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKALRARLKGKEGRLRGNLMGKRVDFSA 355
Query: 356 RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RTVIT DPNL +D+VGVP+SIA N+TFPE VTP+N+
Sbjct: 356 RTVITGDPNLELDEVGVPKSIAMNLTFPERVTPYNI 391
>gi|413917378|gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
Length = 1850
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 188/398 (47%), Positives = 254/398 (63%), Gaps = 21/398 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A + V+ VQFGILSPDEIR+MSV + I+ ETME G+PK GGL DPR G IDR +
Sbjct: 8 SPAEVAKVEFVQFGILSPDEIRQMSVIQ--IEHAETMERGKPKPGGLSDPRLGTIDRKIK 65
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+TC M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L K + +
Sbjct: 66 CETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETKFKQAL 125
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
++R ++ IYD CK K +C GGD++D+ + ++P + GGCG QPNI
Sbjct: 126 KIRNPKNRLKR--IYDACKSKKVCAGGDDLDVQEQDTDEP------IKKRGGCGAQQPNI 177
Query: 186 RRSGLDLTAEWKHVNE--DSQ-------EKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRR 235
G+ + AE+K + D Q E+K L+ + VL + K+ C N +
Sbjct: 178 TVDGMKMVAEFKAPKKKTDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKY 237
Query: 236 SGLD-LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
+ D + + V + + DDLTH+LA II+ N L R E +GA H+
Sbjct: 238 ARPDWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHI 297
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I E ++LQFH+AT DND+PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFS
Sbjct: 298 ITEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 357
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPN+ ID++GVP SIA N+T+PE VTP+N++
Sbjct: 358 ARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIE 395
>gi|444321244|ref|XP_004181278.1| hypothetical protein TBLA_0F02170 [Tetrapisispora blattae CBS 6284]
gi|387514322|emb|CCH61759.1| hypothetical protein TBLA_0F02170 [Tetrapisispora blattae CBS 6284]
Length = 1726
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 192/396 (48%), Positives = 251/396 (63%), Gaps = 25/396 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S APLR +K+VQFG+ SP+EIR +SV + I+FPETM+ R K+GGL DPR G IDR+
Sbjct: 7 SSAPLRTIKEVQFGLFSPEEIRAISVAK--IRFPETMDETQTRAKIGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M ECPGHFGHIDLAKPVFH+GF++K K+ C+C +C KLL+ + ++R
Sbjct: 65 LKCQTCQEGMNECPGHFGHIDLAKPVFHIGFISKIKKVCECICMHCGKLLLDEHNEQMRQ 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+LK K +R A I+ LCK K IC D + DP L ++ GGCG QP
Sbjct: 125 -ILKIKDSKKRFNA-IWSLCKTKMIC------DTDVPSEHDPTQLVSR----GGCGNAQP 172
Query: 184 NIRRSGLDLTAEWKH----VNEDSQEKKIPLTGKGVLLNKK---QGHGGCGRYQPNIRRS 236
+R+ GL L WK + D E++I T + + + K + G + R
Sbjct: 173 TVRKDGLKLVGSWKKEKNTSDGDEPEQRILSTEEILNIFKHISPEDSIAMGFNEEFSRPE 232
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ LT + +G DDLT KLADI+K N L E +GA H I
Sbjct: 233 WMFLTVLPVPPPPVRPSISFNESQRGE--DDLTFKLADILKANISLETLEHNGAPHHAIE 290
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 291 EAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSAR 350
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 351 TVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNID 386
>gi|168066799|ref|XP_001785319.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663074|gb|EDQ49860.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1742
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 192/405 (47%), Positives = 257/405 (63%), Gaps = 25/405 (6%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDR 62
A S A L VK VQFGILSPDEIR+M+V + I+ ET + G+PK+GGL DPR G IDR
Sbjct: 5 FAFSPADLARVKTVQFGILSPDEIRQMAVCK--IESSETYDRGKPKIGGLSDPRLGTIDR 62
Query: 63 SSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVR 122
++C+TCAG+MTECPGHFG+++LAKP+FH+GF+ + ILRCVC+ CS+ L + +
Sbjct: 63 HTKCETCAGSMTECPGHFGYLELAKPMFHIGFLKTVLSILRCVCYNCSRCLADEEDHRFK 122
Query: 123 DVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINK--DGAEDPNSLQNKKQGHGGCGR 180
K + R + D CK K C+ GD++D N +G E+ KK+ HGGCG
Sbjct: 123 QA--KKVRNPKHRLKKVLDCCKSKTKCDTGDDIDENDVMNGEEN-----EKKKSHGGCGA 175
Query: 181 YQPNIRRSGLDLTAEWK-----------HVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGR 228
QP I G+ + AE+K H+ E E+K L+ + VL + K+ C
Sbjct: 176 QQPKISIDGMKIVAEFKPSRKKGEEPEQHMPE-PVERKQQLSAEKVLSILKRISDEECTL 234
Query: 229 YQPNIRRSGLD-LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNES 287
N + + D + + + + + DDLTH+LA II+ NN L R E
Sbjct: 235 LGLNPKYARPDWMILQVLPIPPPPVRPSVMMDSSARSEDDLTHQLAMIIRHNNNLKRQEQ 294
Query: 288 SGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLM 347
+GA TH+I E ++LQFH+AT DND+PG PRA Q+SG+P+K+I RLK KEGRIRGNLM
Sbjct: 295 NGAPTHIINEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICQRLKAKEGRIRGNLM 354
Query: 348 GKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
GKRVDFSARTVITPDPN+ ID++GVP SIA N+T+PE VTP+NM+
Sbjct: 355 GKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNME 399
>gi|390603892|gb|EIN13283.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Punctularia strigosozonata HHB-11173 SS5]
Length = 1729
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 190/402 (47%), Positives = 250/402 (62%), Gaps = 22/402 (5%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVI 60
A S AP++ V +VQFGILSP+EI+ SV + I+FPE M+ +PK+GGLMDPR G I
Sbjct: 6 FAYSAAPIKRVAEVQFGILSPEEIKAYSVAK--IEFPEVMDETTHKPKMGGLMDPRMGTI 63
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+ +CQTC M+ECPGHFGHI+LA+PVFH GF+ K KIL C+C C KL S P
Sbjct: 64 DRNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADTSDPN 123
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD--EMDINKDGAEDPNSLQNKKQGHGGC 178
D + + ++R A ++ CKGK +CE D E +DG E+P K+GHGGC
Sbjct: 124 FADKIRHVR-DPKKRMAVVWGHCKGKMVCEADDPKEEGDGQDG-EEP-----VKKGHGGC 176
Query: 179 GRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGL 238
G +QP IR+ GL L ++K +D ++ K K + L + ++ GL
Sbjct: 177 GHHQPLIRKEGLKLFVQYKKSKDDDEDLKAHQPDKRLFLPSEVYTTFKKMTDSDLHLLGL 236
Query: 239 D---LTAEWKHVNEDSQEKKIPLTGKGV------LLDDLTHKLADIIKCNNELIRNESSG 289
EW + V DDLT+KL DIIK + + ++E G
Sbjct: 237 SDEYARPEWMILTVLPVPPPPVRPSIAVDGGTMRSEDDLTYKLGDIIKASANVRKHEQEG 296
Query: 290 AATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGK 349
HV E ++LQFHVAT DND+ G+P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGK
Sbjct: 297 VPAHVTMEYEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGK 356
Query: 350 RVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RVDFSARTVIT DPNL +D+VGVPRSIA +T+PE VTP+N+
Sbjct: 357 RVDFSARTVITGDPNLMLDEVGVPRSIAMTLTYPERVTPYNI 398
>gi|356538329|ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Glycine max]
Length = 1827
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 186/398 (46%), Positives = 255/398 (64%), Gaps = 20/398 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A + V+ VQFGILSPDEIR+MSV + I+ ET E G+PK+GGL DPR G IDR +
Sbjct: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKVGGLSDPRLGTIDRKLK 65
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+TC +M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L + K + +
Sbjct: 66 CETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHKFKQAL 125
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
++R ++ I D CK K+ CEGGDE+DI ++P K+ GGCG QP I
Sbjct: 126 RIRNPKNRLKK--ILDACKNKSKCEGGDEIDIPGQDTDEP-----VKKSRGGCGAQQPKI 178
Query: 186 RRSGLDLTAEWKHVNEDSQ---------EKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRR 235
G+ + AE+K + S E+K L+ + VL + K+ C N +
Sbjct: 179 TIEGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKY 238
Query: 236 SGLD-LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
+ D + + + + + DDLTH+LA II+ N L R E +G+ H+
Sbjct: 239 ARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHI 298
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I+E ++LQFH+AT DN++PGLPRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFS
Sbjct: 299 ISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 358
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDP + IDQ+GVP SIA N+T+PE VTP+N++
Sbjct: 359 ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIE 396
>gi|448087303|ref|XP_004196296.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
gi|359377718|emb|CCE86101.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
Length = 1772
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 193/397 (48%), Positives = 255/397 (64%), Gaps = 25/397 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+LSP+E+R +SV + ++FPET++ RP+ GGL DPR G IDR+
Sbjct: 8 SSAPLRAVKEVQFGLLSPEEVRAISVAK--VEFPETIDQTTKRPREGGLNDPRLGSIDRN 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC+ +MTECPGHFGHI+LAKPVFH+GF+ K K+ C+C +C KLL+ ++P +
Sbjct: 66 FKCQTCSEDMTECPGHFGHIELAKPVFHIGFIAKIKKVCECICMHCGKLLLDETNPAMAQ 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ K + +R A ++ LCK K ICE + N DPNS QG GGCG QP
Sbjct: 126 AI-KIRDPKKRFNA-VWSLCKSKMICEADVLSNEN-----DPNS-APVTQGRGGCGHTQP 177
Query: 184 NIRRSGLDLTAEW---KHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD 239
IRR GL L W K+ E+ Q ++ LT +L + K C R N +
Sbjct: 178 TIRRDGLKLWGTWKQNKNFEENEQPERRLLTPSEILSVFKHISPEDCFRLGFNEDYA--- 234
Query: 240 LTAEWKHVNEDS-----QEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW + + I DDLT KLADI+K N + R E G+ HV
Sbjct: 235 -RPEWMLITVLAVPPPPVRPSIAFNDTARGEDDLTFKLADILKANINVQRLEMDGSPQHV 293
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I+E +LQFHVAT DND+ G P+A+QK+G+P+K+I+ARLKGKEGR+RGNLMGKRVDFS
Sbjct: 294 ISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFS 353
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
ARTVI+ DPNL +DQVGVP SIA+ +++PEIVTP+N+
Sbjct: 354 ARTVISGDPNLDLDQVGVPISIAKTLSYPEIVTPYNI 390
>gi|336378579|gb|EGO19737.1| DNA-directed RNA polymerase II, subunit 1 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1744
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 194/400 (48%), Positives = 249/400 (62%), Gaps = 19/400 (4%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVI 60
A S AP+R VK+VQFGILSP+EI+ SV + I+ PE M+ +PKLGGLMDPR G I
Sbjct: 6 FAYSAAPIRKVKEVQFGILSPEEIKAYSVAK--IEHPEVMDEATHKPKLGGLMDPRMGTI 63
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+ +CQTC M+ECPGHFGHI+LA+PVFH GF+ K KIL C+C C KL S P
Sbjct: 64 DRNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADISDPS 123
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
D + + + R A ++ CK K CE DE +GAE+ K+GHGGCG
Sbjct: 124 FADKIRHVR-DPKARMAVVWAHCKTKMTCE-TDEPKEEGEGAEN----DEPKKGHGGCGH 177
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD- 239
QP +R+ GL L ++K +D +E K K + + ++ GL
Sbjct: 178 QQPLVRKEGLKLFVQYKKPKDDDEEVKSLQPDKRLFTPSEVYTTFKKMSDSDLHLIGLSD 237
Query: 240 --LTAEWKHVN-----EDSQEKKIPLTGKGVLL-DDLTHKLADIIKCNNELIRNESSGAA 291
EW + I + G + DDLT+KL DIIK + + R E GA
Sbjct: 238 EYARPEWMILTVMPVPPPPVRPSIAVDGGAMRSEDDLTYKLGDIIKASVNVRRCEQEGAP 297
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
HVI E ++LQFHVAT DND+ G+P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRV
Sbjct: 298 AHVITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DFSARTVIT DPNL +D+VGVPRSIA N+T+PE VTP+N+
Sbjct: 358 DFSARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNI 397
>gi|366998165|ref|XP_003683819.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
gi|357522114|emb|CCE61385.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
Length = 1719
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 190/396 (47%), Positives = 250/396 (63%), Gaps = 25/396 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+ SP+E+R +SV + IKFPETM+ R K+GGL DPR G IDR+
Sbjct: 7 SSAPLRTVKEVQFGLFSPEEVRSISVAK--IKFPETMDETQTRAKIGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M ECPGHFGHIDLAKPVFH+GF++K K+ C+C +C KLL+ ++ ++R
Sbjct: 65 LKCQTCQEGMNECPGHFGHIDLAKPVFHIGFISKIKKVCECICMHCGKLLLDENNEQMRQ 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
V+ + S++R I+ LCK K +C E D+ + +DP L ++ GGCG QP
Sbjct: 125 VM--SIKDSKKRFNAIWTLCKTKTVC----ETDVPSE--DDPTQLISR----GGCGNAQP 172
Query: 184 NIRRSGLDLTAEWK--HVNEDSQEKKIPLTGKGVLLN-----KKQGHGGCGRYQPNIRRS 236
IR+ GL L WK D E + + +LN G + R
Sbjct: 173 TIRKDGLKLVGSWKKDKATNDGDEPEQRVLNTEEILNIFKHISVHDSNTLGFNEQFARPD 232
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ LT + +G DDLT KLADI+K N L E +GA H I
Sbjct: 233 WMILTVLPVPPPPVRPSISFNESQRGE--DDLTFKLADILKANISLETLEHNGAPHHAIE 290
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFH+AT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 291 EAESLLQFHIATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSAR 350
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 351 TVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNID 386
>gi|388855841|emb|CCF50625.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Ustilago hordei]
Length = 1784
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 186/405 (45%), Positives = 254/405 (62%), Gaps = 29/405 (7%)
Query: 2 AMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVI 60
+ A S AP+R V++VQFGILSP+EIR +SV + I+ PE E G+P++GGL DPR G +
Sbjct: 8 SFAHSTAPIRAVREVQFGILSPEEIRAISVCK--IEVPEIKDESGKPRIGGLSDPRLGTL 65
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+ +CQTC ECPGHFGHIDLAKPVFH+G++ K KIL CVC++C KL
Sbjct: 66 DRNYKCQTCGEGHQECPGHFGHIDLAKPVFHIGYLGKVKKILECVCYHCGKLKADVVTDP 125
Query: 121 VRDVVLK-TKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCG 179
V D ++K T+G +RR +++ C K +CE D + ++ G E + K GHGGCG
Sbjct: 126 VFDQIVKATRGSRKRRFQRVWEYCSKKMVCEADDPKEEDEMGFE-----EQAKPGHGGCG 180
Query: 180 RYQPNIRRSGLDLTAEWKHVN------------EDSQEKKIPLTGKGVLLNKKQGH--GG 225
R QPNIRR GL L +WK ++++ +P + +L K
Sbjct: 181 RVQPNIRREGLKLFTQWKKGKGEDEEGEETSGIAQAEKRPLPASEAHTILKKMSSEDIAV 240
Query: 226 CGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRN 285
G + N R + LT + G+ DDLT+KLAD+I+ N L +
Sbjct: 241 LGLSEENARPDWMILTVMPVPPPPVRPSVQD--GGE----DDLTYKLADVIRANATLKKM 294
Query: 286 ESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGN 345
E G H++A+ ++LQFH AT DND+ G P+AMQ SG+P+K+++ARLKGKEGR+RGN
Sbjct: 295 EQEGTPAHILADFEQLLQFHCATFMDNDIAGQPQAMQSSGRPIKSVRARLKGKEGRLRGN 354
Query: 346 LMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN 390
LMGKRV+FSARTVIT DP L +D+VGVP+SIA+N+T+PE VTP+N
Sbjct: 355 LMGKRVNFSARTVITGDPLLELDEVGVPKSIARNLTYPERVTPYN 399
>gi|426201955|gb|EKV51878.1| hypothetical protein AGABI2DRAFT_215454, partial [Agaricus bisporus
var. bisporus H97]
Length = 1800
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 197/396 (49%), Positives = 254/396 (64%), Gaps = 17/396 (4%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVI 60
A S AP+R VK+VQFGILSP+EI+ SV + I+ PE M+ +PK+GGLMDPR G I
Sbjct: 6 FAYSSAPIRKVKEVQFGILSPEEIKATSVAK--IEHPEVMDEATHKPKMGGLMDPRMGTI 63
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+ +CQTC M+ECPGHFGHI+LA+PVFH GF+ K KIL C+C C KL S P
Sbjct: 64 DRNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADTSDPN 123
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
D + + +S+ R A ++ CK K +CE DI +DG DP + + KK GHGGCG
Sbjct: 124 FADKIRHIR-ESKARLAVVWAHCKAKTVCEPD---DIKEDGV-DPEADEPKK-GHGGCGH 177
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGG----CGRYQPNIRRS 236
QP +R+ GL L ++K +D K +T V K+ G R
Sbjct: 178 IQPQVRKEGLKLFVQYKKTKDDDDPDKRLITPSEVYTVFKKMTDSDLHLLGLSDEYARPE 237
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLL-DDLTHKLADIIKCNNELIRNESSGAATHVI 295
+ LT V I + G + DDLT+KL DIIK + + R E GA HVI
Sbjct: 238 WMILTV--MPVPPPPVRPSIAVDGGAMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVI 295
Query: 296 AENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 355
+E ++LQFHVAT DND+ G+P+A+QKSG+P+KA++ARLKGKEGR+RGNLMGKRVDFSA
Sbjct: 296 SEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKALRARLKGKEGRLRGNLMGKRVDFSA 355
Query: 356 RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RTVIT DPNL +D+VGVP+SIA N+TFPE VTP+N+
Sbjct: 356 RTVITGDPNLELDEVGVPKSIAMNLTFPERVTPYNI 391
>gi|357144975|ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Brachypodium distachyon]
Length = 1862
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 187/398 (46%), Positives = 250/398 (62%), Gaps = 19/398 (4%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A + V+ VQFGILSPDEIR+MSV I++ ETME G+ K GGL DPR G IDR +
Sbjct: 8 SPAEVAKVQLVQFGILSPDEIRQMSVVV--IEYAETMEKGKAKPGGLSDPRLGTIDRKVK 65
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C TC M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L K + +
Sbjct: 66 CDTCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDAKFKQAL 125
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
+++ R+ IYD CK K IC GGD++++ D + K+ GGCG QPNI
Sbjct: 126 KIRNPKNKLRR--IYDACKSKKICAGGDDLEVEDQQDTD----EPVKKKRGGCGAQQPNI 179
Query: 186 RRSGLDLTAEWKHV---NEDSQEKKIPLTGKGVL-----LN--KKQGHGGCGRYQPNIRR 235
G+ + AE+K N+D + P+ K +L LN K+ C N +
Sbjct: 180 TVDGMKMVAEFKQTKKKNDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKF 239
Query: 236 SGLD-LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
+ D + + + + + DDLTH+LA II+ N L R E +GA H+
Sbjct: 240 ARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHI 299
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I E ++LQFH+AT DND+PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFS
Sbjct: 300 ITEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 359
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPN+ ID++GVP SIA N+T+PE VTP+N++
Sbjct: 360 ARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIE 397
>gi|242078217|ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
gi|241940227|gb|EES13372.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
Length = 1857
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 186/398 (46%), Positives = 253/398 (63%), Gaps = 21/398 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A + V+ VQFGILSPDEIR+MSV + I+ ETME G+PK GGL DPR G IDR +
Sbjct: 8 SPAEVAKVELVQFGILSPDEIRQMSVVQ--IEHAETMERGKPKPGGLSDPRLGTIDRKIK 65
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+TC M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L K + +
Sbjct: 66 CETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETKFKQAL 125
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
++R ++ IYD CK K +C GGD++D+ + ++P + GGCG QPNI
Sbjct: 126 KIRNPKNRLKR--IYDACKSKKVCAGGDDLDVQEQDTDEP------VKKRGGCGAQQPNI 177
Query: 186 RRSGLDLTAEWKHVNEDSQ---------EKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRR 235
G+ + AE+K + S E+K L+ + VL + K+ C N +
Sbjct: 178 TVDGMKMVAEFKAPKKKSDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKY 237
Query: 236 SGLD-LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
+ D + + V + + DDLTH+LA II+ N L R E +GA H+
Sbjct: 238 ARPDWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHI 297
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I E ++LQFH+AT DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFS
Sbjct: 298 ITEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 357
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPN+ ID++GVP SIA N+T+PE VTP+N++
Sbjct: 358 ARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIE 395
>gi|254583772|ref|XP_002497454.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
gi|238940347|emb|CAR28521.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
Length = 1744
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 195/396 (49%), Positives = 250/396 (63%), Gaps = 25/396 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+ SP+EI +SV + IKFPETM+ R K+GGL DPR G IDRS
Sbjct: 7 SSAPLRTVKEVQFGLFSPEEICAISVAK--IKFPETMDETQTRAKIGGLNDPRLGSIDRS 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M ECPGHFGHI+LAKPVFH+GF++K K+ CVC +C KLL+ + ++R
Sbjct: 65 LKCQTCQEGMNECPGHFGHIELAKPVFHIGFISKIKKVCECVCMHCGKLLLDEHNEQMRQ 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ K K +R A ++ LCK K IC + D+ D EDP L ++ GGCG QP
Sbjct: 125 AI-KIKDSKKRFNA-VWSLCKAKMIC----DTDVPSD--EDPTQLISR----GGCGNAQP 172
Query: 184 NIRRSGLDLTAEWKHVNE--DSQEKKIPLTGKGVLLN-----KKQGHGGCGRYQPNIRRS 236
IRR GL L WK D++E + + +LN + G + R
Sbjct: 173 TIRRDGLKLVGSWKKDKNSGDNEEPEQRVLNMEEILNIFKHISPEDSWKLGFNEEFARPE 232
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ LT + +G DDLT KLADI+K N L E +GA H I
Sbjct: 233 WMILTVLPVPPPPVRPSISFNESQRGE--DDLTFKLADILKANISLETLEHNGAPHHTIE 290
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 291 EAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSAR 350
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 351 TVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNID 386
>gi|356496595|ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Glycine max]
Length = 1827
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 186/398 (46%), Positives = 255/398 (64%), Gaps = 20/398 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A + V+ VQFGILSPDEIR+MSV + I+ ET E G+PK+GGL DPR G IDR +
Sbjct: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKVGGLSDPRLGTIDRKLK 65
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+TC +M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L + K + +
Sbjct: 66 CETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHKFKQAL 125
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
++R ++ I D CK K+ CEGGDE+DI E ++ K+ GGCG QP I
Sbjct: 126 RIRNPKNRLKK--ILDACKNKSKCEGGDEIDIPGQDTE-----ESVKKSRGGCGAQQPKI 178
Query: 186 RRSGLDLTAEWKHVNEDSQ---------EKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRR 235
G+ + AE+K + S E+K L+ + VL + K+ C N +
Sbjct: 179 TIEGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKY 238
Query: 236 SGLD-LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
+ D + + + + + DDLTH+LA II+ N L R E +G+ H+
Sbjct: 239 ARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHI 298
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I+E ++LQFH+AT DN++PGLPRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFS
Sbjct: 299 ISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 358
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDP + IDQ+GVP SIA N+T+PE VTP+N++
Sbjct: 359 ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIE 396
>gi|6320061|ref|NP_010141.1| Rpo21p [Saccharomyces cerevisiae S288c]
gi|2507347|sp|P04050.2|RPB1_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit; AltName: Full=RNA polymerase II
subunit B220
gi|14278324|pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278335|pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278365|pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
gi|20150713|pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749616|pdb|1NIK|A Chain A, Wild Type Rna Polymerase Ii
gi|30749737|pdb|1NT9|A Chain A, Complete 12-Subunit Rna Polymerase Ii
gi|34810553|pdb|1PQV|A Chain A, Rna Polymerase Ii-Tfiis Complex
gi|46015415|pdb|1R5U|A Chain A, Rna Polymerase Ii Tfiib Complex
gi|46015780|pdb|1SFO|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965911|pdb|1R9S|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965923|pdb|1R9T|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966107|pdb|1TWA|A Chain A, Rna Polymerase Ii Complexed With Atp
gi|56966121|pdb|1TWC|A Chain A, Rna Polymerase Ii Complexed With Gtp
gi|56966131|pdb|1TWF|A Chain A, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966141|pdb|1TWG|A Chain A, Rna Polymerase Ii Complexed With Ctp
gi|56966151|pdb|1TWH|A Chain A, Rna Polymerase Ii Complexed With 2'datp
gi|58177164|pdb|1WCM|A Chain A, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679444|pdb|1Y1W|A Chain A, Complete Rna Polymerase Ii Elongation Complex
gi|61679461|pdb|1Y77|A Chain A, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679502|pdb|1Y1V|A Chain A, Refined Rna Polymerase Ii-tfiis Complex
gi|61679515|pdb|1Y1Y|A Chain A, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754243|pdb|2B63|A Chain A, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590854|pdb|2B8K|A Chain A, 12-Subunit Rna Polymerase Ii
gi|122920061|pdb|2E2H|A Chain A, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920076|pdb|2E2I|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920091|pdb|2E2J|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921030|pdb|2NVQ|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921066|pdb|2NVT|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921082|pdb|2NVX|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921097|pdb|2NVY|A Chain A, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921109|pdb|2NVZ|A Chain A, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104674|pdb|2JA5|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104689|pdb|2JA6|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104710|pdb|2JA7|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104722|pdb|2JA7|M Chain M, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104734|pdb|2JA8|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387184|pdb|2YU9|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877773|pdb|2R7Z|A Chain A, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172227|pdb|2R92|A Chain A, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172240|pdb|2R93|A Chain A, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613462|pdb|2VUM|A Chain A, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368734|pdb|3CQZ|A Chain A, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983590|pdb|3FKI|A Chain A, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781916|pdb|3GTG|A Chain A, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781929|pdb|3GTJ|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781942|pdb|3GTK|A Chain A, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781955|pdb|3GTL|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781968|pdb|3GTM|A Chain A, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781982|pdb|3GTO|A Chain A, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781995|pdb|3GTP|A Chain A, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782008|pdb|3GTQ|A Chain A, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104511|pdb|3H3V|B Chain B, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839441|pdb|3HOU|A Chain A, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839456|pdb|3HOU|M Chain M, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839471|pdb|3HOV|A Chain A, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839486|pdb|3HOW|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839501|pdb|3HOX|A Chain A, Complete Rna Polymerase Ii Elongation Complex V
gi|254839516|pdb|3HOY|A Chain A, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839531|pdb|3HOZ|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471946|pdb|3I4M|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471961|pdb|3I4N|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618765|pdb|3K1F|A Chain A, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914552|pdb|3K7A|A Chain A, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982475|pdb|3M3Y|A Chain A, Rna Polymerase Ii Elongation Complex C
gi|295982488|pdb|3M4O|A Chain A, Rna Polymerase Ii Elongation Complex B
gi|325053963|pdb|3PO2|A Chain A, Arrested Rna Polymerase Ii Elongation Complex
gi|325053978|pdb|3PO3|A Chain A, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634538|pdb|3QT1|A Chain A, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197456|pdb|3RZD|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197468|pdb|3RZO|A Chain A, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197480|pdb|3S14|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197492|pdb|3S15|A Chain A, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197504|pdb|3S16|A Chain A, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197516|pdb|3S17|A Chain A, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197528|pdb|3S1M|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197540|pdb|3S1N|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197552|pdb|3S1Q|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197564|pdb|3S1R|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197576|pdb|3S2D|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781197|pdb|3S2H|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|414145446|pdb|4BBR|A Chain A, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145459|pdb|4BBS|A Chain A, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|1419221|emb|CAA65619.1| RPB1 [Saccharomyces cerevisiae]
gi|1431217|emb|CAA98713.1| RPO21 [Saccharomyces cerevisiae]
gi|151941861|gb|EDN60217.1| RNA polymerase [Saccharomyces cerevisiae YJM789]
gi|285810894|tpg|DAA11718.1| TPA: Rpo21p [Saccharomyces cerevisiae S288c]
gi|349576938|dbj|GAA22107.1| K7_Rpo21p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300684|gb|EIW11775.1| Rpo21p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1733
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 194/396 (48%), Positives = 250/396 (63%), Gaps = 25/396 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+ SP+E+R +SV + I+FPETM+ R K+GGL DPR G IDR+
Sbjct: 7 SSAPLRTVKEVQFGLFSPEEVRAISVAK--IRFPETMDETQTRAKIGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M ECPGHFGHIDLAKPVFHVGF+ K K+ CVC +C KLL+ H ++
Sbjct: 65 LKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLD-EHNELMR 123
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L K S++R A I+ LCK K +C E D+ + +DP L ++ GGCG QP
Sbjct: 124 QALAIK-DSKKRFAAIWTLCKTKMVC----ETDVPSE--DDPTQLVSR----GGCGNTQP 172
Query: 184 NIRRSGLDLTAEWK--HVNEDSQEKKIPLTGKGVLLN-----KKQGHGGCGRYQPNIRRS 236
IR+ GL L WK D+ E ++ + +LN + G + R
Sbjct: 173 TIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPE 232
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ LT + +G DDLT KLADI+K N L E +GA H I
Sbjct: 233 WMILTCLPVPPPPVRPSISFNESQRGE--DDLTFKLADILKANISLETLEHNGAPHHAIE 290
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 291 EAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSAR 350
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 351 TVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNID 386
>gi|357380836|pdb|4A3C|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546290|pdb|4A3B|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546308|pdb|4A3D|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546325|pdb|4A3E|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546342|pdb|4A3F|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546359|pdb|4A3J|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546376|pdb|4A3K|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546392|pdb|4A3L|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546409|pdb|4A3M|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977879|pdb|4A3G|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977894|pdb|4A3I|A Chain A, Rna Polymerase Ii Binary Complex With Dna
gi|380764979|pdb|4A93|A Chain A, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
Length = 1732
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 194/396 (48%), Positives = 250/396 (63%), Gaps = 25/396 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+ SP+E+R +SV + I+FPETM+ R K+GGL DPR G IDR+
Sbjct: 7 SSAPLRTVKEVQFGLFSPEEVRAISVAK--IRFPETMDETQTRAKIGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M ECPGHFGHIDLAKPVFHVGF+ K K+ CVC +C KLL+ H ++
Sbjct: 65 LKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLD-EHNELMR 123
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L K S++R A I+ LCK K +C E D+ + +DP L ++ GGCG QP
Sbjct: 124 QALAIK-DSKKRFAAIWTLCKTKMVC----ETDVPSE--DDPTQLVSR----GGCGNTQP 172
Query: 184 NIRRSGLDLTAEWK--HVNEDSQEKKIPLTGKGVLLN-----KKQGHGGCGRYQPNIRRS 236
IR+ GL L WK D+ E ++ + +LN + G + R
Sbjct: 173 TIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPE 232
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ LT + +G DDLT KLADI+K N L E +GA H I
Sbjct: 233 WMILTCLPVPPPPVRPSISFNESQRGE--DDLTFKLADILKANISLETLEHNGAPHHAIE 290
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 291 EAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSAR 350
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 351 TVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNID 386
>gi|259145103|emb|CAY78367.1| Rpo21p [Saccharomyces cerevisiae EC1118]
Length = 1733
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 194/396 (48%), Positives = 250/396 (63%), Gaps = 25/396 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+ SP+E+R +SV + I+FPETM+ R K+GGL DPR G IDR+
Sbjct: 7 SSAPLRTVKEVQFGLFSPEEVRAISVAK--IRFPETMDETQTRAKIGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M ECPGHFGHIDLAKPVFHVGF+ K K+ CVC +C KLL+ H ++
Sbjct: 65 LKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLD-EHNELMR 123
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L K S++R A I+ LCK K +C E D+ + +DP L ++ GGCG QP
Sbjct: 124 QALAIK-DSKKRFAAIWTLCKTKMVC----ETDVPSE--DDPTQLVSR----GGCGNTQP 172
Query: 184 NIRRSGLDLTAEWK--HVNEDSQEKKIPLTGKGVLLN-----KKQGHGGCGRYQPNIRRS 236
IR+ GL L WK D+ E ++ + +LN + G + R
Sbjct: 173 TIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPE 232
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ LT + +G DDLT KLADI+K N L E +GA H I
Sbjct: 233 WMILTCLPVPPPPVRPSISFNESQRGE--DDLTFKLADILKANISLETLEHNGAPHHAIE 290
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 291 EAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSAR 350
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 351 TVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNID 386
>gi|4398|emb|CAA26904.1| put. RNA polymerase II largest subunit [Saccharomyces cerevisiae]
Length = 1726
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 194/396 (48%), Positives = 250/396 (63%), Gaps = 25/396 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+ SP+E+R +SV + I+FPETM+ R K+GGL DPR G IDR+
Sbjct: 7 SSAPLRTVKEVQFGLFSPEEVRAISVAK--IRFPETMDETQTRAKIGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M ECPGHFGHIDLAKPVFHVGF+ K K+ CVC +C KLL+ H ++
Sbjct: 65 LKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLD-EHNELMR 123
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L K S++R A I+ LCK K +C E D+ + +DP L ++ GGCG QP
Sbjct: 124 QALAIK-DSKKRFAAIWTLCKTKMVC----ETDVPSE--DDPTQLVSR----GGCGNTQP 172
Query: 184 NIRRSGLDLTAEWK--HVNEDSQEKKIPLTGKGVLLN-----KKQGHGGCGRYQPNIRRS 236
IR+ GL L WK D+ E ++ + +LN + G + R
Sbjct: 173 TIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPE 232
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ LT + +G DDLT KLADI+K N L E +GA H I
Sbjct: 233 WMILTCLPVPPPPVRPSISFNESQRGE--DDLTFKLADILKANISLETLEHNGAPHHAIE 290
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 291 EAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSAR 350
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 351 TVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNID 386
>gi|353251633|pdb|3J0K|A Chain A, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 1455
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 194/396 (48%), Positives = 250/396 (63%), Gaps = 25/396 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+ SP+E+R +SV + I+FPETM+ R K+GGL DPR G IDR+
Sbjct: 7 SSAPLRTVKEVQFGLFSPEEVRAISVAK--IRFPETMDETQTRAKIGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M ECPGHFGHIDLAKPVFHVGF+ K K+ CVC +C KLL+ H ++
Sbjct: 65 LKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLD-EHNELMR 123
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L K S++R A I+ LCK K +C E D+ + +DP L ++ GGCG QP
Sbjct: 124 QALAIK-DSKKRFAAIWTLCKTKMVC----ETDVPSE--DDPTQLVSR----GGCGNTQP 172
Query: 184 NIRRSGLDLTAEWK--HVNEDSQEKKIPLTGKGVLLN-----KKQGHGGCGRYQPNIRRS 236
IR+ GL L WK D+ E ++ + +LN + G + R
Sbjct: 173 TIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPE 232
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ LT + +G DDLT KLADI+K N L E +GA H I
Sbjct: 233 WMILTCLPVPPPPVRPSISFNESQRGE--DDLTFKLADILKANISLETLEHNGAPHHAIE 290
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 291 EAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSAR 350
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 351 TVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNID 386
>gi|190405143|gb|EDV08410.1| RNA polymerase II core subunit [Saccharomyces cerevisiae RM11-1a]
Length = 1733
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 194/396 (48%), Positives = 250/396 (63%), Gaps = 25/396 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+ SP+E+R +SV + I+FPETM+ R K+GGL DPR G IDR+
Sbjct: 7 SSAPLRTVKEVQFGLFSPEEVRAISVAK--IRFPETMDETQTRAKIGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M ECPGHFGHIDLAKPVFHVGF+ K K+ CVC +C KLL+ H ++
Sbjct: 65 LKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLD-EHNELMR 123
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L K S++R A I+ LCK K +C E D+ + +DP L ++ GGCG QP
Sbjct: 124 QALAIK-DSKKRFAAIWTLCKTKMVC----ETDVPSE--DDPTQLVSR----GGCGNTQP 172
Query: 184 NIRRSGLDLTAEWK--HVNEDSQEKKIPLTGKGVLLN-----KKQGHGGCGRYQPNIRRS 236
IR+ GL L WK D+ E ++ + +LN + G + R
Sbjct: 173 TIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPE 232
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ LT + +G DDLT KLADI+K N L E +GA H I
Sbjct: 233 WMILTCLPVPPPPVRPSISFNESQRGE--DDLTFKLADILKANISLETLEHNGAPHHAIE 290
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 291 EAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSAR 350
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 351 TVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNID 386
>gi|401626472|gb|EJS44418.1| rpo21p [Saccharomyces arboricola H-6]
Length = 1726
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 194/396 (48%), Positives = 249/396 (62%), Gaps = 25/396 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+ SP+E+R +SV + I+FPETM+ R K+GGL DPR G IDR+
Sbjct: 7 SSAPLRTVKEVQFGLFSPEEVRAISVAK--IRFPETMDETQTRAKIGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M ECPGHFGHIDLAKPVFHVGF+ K K+ CVC +C KLL+ H ++
Sbjct: 65 LKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLD-EHNELMR 123
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L K S++R A I+ LCK K +C E D+ + DP L ++ GGCG QP
Sbjct: 124 QALAIK-DSKKRFAAIWTLCKTKMVC----ETDVPSEN--DPTQLVSR----GGCGNTQP 172
Query: 184 NIRRSGLDLTAEWK--HVNEDSQEKKIPLTGKGVLLN-----KKQGHGGCGRYQPNIRRS 236
+R+ GL L WK D+ E ++ + +LN + G + R
Sbjct: 173 TVRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPE 232
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ LT + +G DDLT KLADI+K N L E +GA H I
Sbjct: 233 WMILTCLPVPPPPVRPSISFNESQRGE--DDLTFKLADILKANISLETLEHNGAPHHAIE 290
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 291 EAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSAR 350
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVI+ DPNL +DQVGVPRSIA+ +T+PE+VTP+N+D
Sbjct: 351 TVISGDPNLELDQVGVPRSIAKTLTYPEVVTPYNID 386
>gi|256273567|gb|EEU08500.1| Rpo21p [Saccharomyces cerevisiae JAY291]
Length = 1733
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 194/396 (48%), Positives = 250/396 (63%), Gaps = 25/396 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+ SP+E+R +SV + I+FPETM+ R K+GGL DPR G IDR+
Sbjct: 7 SSAPLRTVKEVQFGLFSPEEVRAISVAK--IRFPETMDETQTRAKIGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M ECPGHFGHIDLAKPVFHVGF+ K K+ CVC +C KLL+ H ++
Sbjct: 65 LKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLD-EHNELMR 123
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L K S++R A I+ LCK K +C E D+ + +DP L ++ GGCG QP
Sbjct: 124 HALAIK-DSKKRFAAIWTLCKTKMVC----ETDVPSE--DDPTQLVSR----GGCGNTQP 172
Query: 184 NIRRSGLDLTAEWK--HVNEDSQEKKIPLTGKGVLLN-----KKQGHGGCGRYQPNIRRS 236
IR+ GL L WK D+ E ++ + +LN + G + R
Sbjct: 173 TIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPE 232
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ LT + +G DDLT KLADI+K N L E +GA H I
Sbjct: 233 WMILTCLPVPPPPVRPSISFNESQRGE--DDLTFKLADILKANISLETLEHNGAPHHAIE 290
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 291 EAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSAR 350
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 351 TVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNID 386
>gi|297603848|ref|NP_001054670.2| Os05g0151000 [Oryza sativa Japonica Group]
gi|222630225|gb|EEE62357.1| hypothetical protein OsJ_17146 [Oryza sativa Japonica Group]
gi|255676030|dbj|BAF16584.2| Os05g0151000 [Oryza sativa Japonica Group]
Length = 1834
Score = 347 bits (891), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 186/399 (46%), Positives = 252/399 (63%), Gaps = 22/399 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A + V+ VQFG+LSPDEIR+MSV I+ ETME G+PK GGL DPR G IDR +
Sbjct: 9 SPAEVAKVEAVQFGVLSPDEIRQMSVVH--IEHAETMEKGKPKPGGLSDPRMGTIDRKIK 66
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+TC M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L K + +
Sbjct: 67 CETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDIKFKQAL 126
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDIN-KDGAEDPNSLQNKKQGHGGCGRYQPN 184
+++ ++ IYD CK + IC GGD +D+ + G +DP + GGCG QPN
Sbjct: 127 KIRNPKNKLKR--IYDACKNRKICAGGDNLDVQEQQGTDDP------VKKRGGCGAQQPN 178
Query: 185 IRRSGLDLTAEW---KHVNEDSQEKKIPLTGKGVL-----LN--KKQGHGGCGRYQPNIR 234
I G+ + AE+ K N+D ++ P+ K +L LN K C N +
Sbjct: 179 ITVDGMKMVAEYKAPKKKNDDQEQLPEPVDRKQILSAERVLNVLKHISDEDCLLLGLNPK 238
Query: 235 RSGLD-LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATH 293
+ D + + + + + DDLTH+LA II+ N L R E +GA H
Sbjct: 239 FARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAH 298
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
+I E ++LQFH+AT DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDF
Sbjct: 299 IITEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 358
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
SARTVITPDPN+ ID++GVP SIA N+T+PE VTP+N++
Sbjct: 359 SARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIE 397
>gi|213404374|ref|XP_002172959.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
gi|212001006|gb|EEB06666.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
Length = 1748
Score = 347 bits (890), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 194/393 (49%), Positives = 255/393 (64%), Gaps = 17/393 (4%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S PLR V++VQFGILSP+EIR MSV + I+FPETM+ G RP++ GL+DPR G IDR
Sbjct: 9 SSVPLRRVEEVQFGILSPEEIRSMSVAK--IEFPETMDETGLRPRVAGLLDPRLGTIDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M ECPGHFGHI+LAKPVFH+GF+TK KIL CVC+ C KL + PS+PK +
Sbjct: 67 FKCQTCGETMAECPGHFGHIELAKPVFHIGFLTKIKKILECVCWNCGKLKIDPSNPKFAE 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + R I+++CK K +CE G + D A DPN + + G QP
Sbjct: 127 T--QRFRDPKNRLNAIWNICKAKMVCETG--VSAGSD-AFDPNRVGGELGHGGCGNA-QP 180
Query: 184 NIRRSGLDLTAEWKHVNEDSQ--EKKI--PLTGKGVLLN-KKQGHGGCGRYQPNIRRSGL 238
IR+ GL L WK +DS EK++ PL + + + G + R +
Sbjct: 181 TIRKEGLKLWGSWKKGKDDSDLPEKRLLNPLEVHTIFKHISSEDLVYMGLNEQYARPDWM 240
Query: 239 DLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
+T V S I + G DDLTHKL+DIIK N + R E GA H+++E
Sbjct: 241 IITV--LPVPPPSVRPSISVDGSSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSEY 298
Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
++LQFHVAT DN++ G P+A+QKSG+PLK+I+ARLKGKEGR+RGNLMGKRVDFSARTV
Sbjct: 299 EQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTV 358
Query: 359 ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
IT DPNL +D++GVPR+IA+ +T+PE VTP+N+
Sbjct: 359 ITGDPNLSLDELGVPRTIAKTLTYPETVTPYNI 391
>gi|449550549|gb|EMD41513.1| hypothetical protein CERSUDRAFT_110068 [Ceriporiopsis subvermispora
B]
Length = 1749
Score = 347 bits (890), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 194/401 (48%), Positives = 248/401 (61%), Gaps = 21/401 (5%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVI 60
A S AP+R VK+VQFGILSP+EI+ SV + I+ PE M+ +PKLGGLMDPR G I
Sbjct: 6 FAYSAAPIRKVKEVQFGILSPEEIKAYSVAK--IEHPEVMDETTHKPKLGGLMDPRMGTI 63
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+ +CQTC M+ECPGHFGHI+LA+PVFH GF+ K KIL C+C C KL S
Sbjct: 64 DRNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADSSDVN 123
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
D + + R QA +++ CK K +CE DE DG E+ K+GHGGCG
Sbjct: 124 FADRIRHIRDPKARMQA-VWNFCKTKMVCE-PDEPKDEHDGMEN----DEPKKGHGGCGA 177
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQ-PNIRRSGLD 239
QP +R+ GL L ++K ++ +E K L L + + + ++ GL
Sbjct: 178 AQPLVRKEGLKLFVQYKRSKDEDEEVK-SLQPDKRLFPPHEVYTALKKISDTDLHLLGLS 236
Query: 240 ---LTAEWKHVNEDSQEKKIPLTGKGV------LLDDLTHKLADIIKCNNELIRNESSGA 290
EW + V DDLT+KL DIIK + + R E GA
Sbjct: 237 DEYARPEWMILTVLPVPPPPVRPSIAVDGGTMRSEDDLTYKLGDIIKASANVRRCEQEGA 296
Query: 291 ATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
HVI E ++LQFHVAT DND+ G+P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKR
Sbjct: 297 PAHVITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKR 356
Query: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
VDFSARTVIT DPNL +D+VGVPRSIA N+TFPE VTP+N+
Sbjct: 357 VDFSARTVITGDPNLDLDEVGVPRSIAMNLTFPERVTPYNI 397
>gi|410075914|ref|XP_003955539.1| hypothetical protein KAFR_0B01060 [Kazachstania africana CBS 2517]
gi|372462122|emb|CCF56404.1| hypothetical protein KAFR_0B01060 [Kazachstania africana CBS 2517]
Length = 1685
Score = 347 bits (890), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 193/396 (48%), Positives = 250/396 (63%), Gaps = 25/396 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+ SP+E+R +SV + ++FPETM+ R K+GGL DPR G IDR+
Sbjct: 7 SSAPLRTVKEVQFGLFSPEEVRAISVAK--VRFPETMDETQTRAKIGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M ECPGHFGHIDLAKPVFHVGF++K K+ VC +C KLL+ + ++R
Sbjct: 65 LKCQTCQEGMNECPGHFGHIDLAKPVFHVGFISKIKKVCESVCMHCGKLLLDEHNEQMRQ 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
VLK K +R A ++ LCK K IC E D+ + DP L ++ GGCG QP
Sbjct: 125 -VLKIKDPKKRFNA-VWSLCKTKMIC----ETDVPSEN--DPTQLISR----GGCGNAQP 172
Query: 184 NIRRSGLDLTAEWK--HVNEDSQEKKIPLTGKGVLLN-----KKQGHGGCGRYQPNIRRS 236
+R+ GL L WK D +E + + G +LN + G + R
Sbjct: 173 TVRKDGLKLVGSWKKDKATSDGEEPEQRVLGVEEILNIFKHISPEDSTKLGFDEEFARPE 232
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ LT + +G DDLT KLADI+K N L E +GA H I
Sbjct: 233 WMILTVLPVPPPPVRPSISFNESQRGE--DDLTFKLADILKANISLETLEHNGAPHHAIE 290
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 291 EAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSAR 350
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 351 TVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNID 386
>gi|336364350|gb|EGN92710.1| hypothetical protein SERLA73DRAFT_98944 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1741
Score = 347 bits (890), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 195/399 (48%), Positives = 250/399 (62%), Gaps = 20/399 (5%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVI 60
A S AP+R VK+VQFGILSP+EI+ SV + I+ PE M+ +PKLGGLMDPR G I
Sbjct: 6 FAYSAAPIRKVKEVQFGILSPEEIKAYSVAK--IEHPEVMDEATHKPKLGGLMDPRMGTI 63
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+ +CQTC M+ECPGHFGHI+LA+PVFH GF+ K KIL C+C C KL S P
Sbjct: 64 DRNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADISDPS 123
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
D + + + R A ++ CK K CE DE +GAE+ K+GHGGCG
Sbjct: 124 FADKIRHVR-DPKARMAVVWAHCKTKMTCE-TDEPKEEGEGAEN----DEPKKGHGGCGH 177
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQ----EKKIPLTGKGVLLNKKQGHGG---CGRYQPNI 233
QP +R+ GL L ++K +D + +K++ + KK G
Sbjct: 178 QQPLVRKEGLKLFVQYKKPKDDDESLQPDKRLFTPSEVYTTFKKMSDSDLHLIGLSDEYA 237
Query: 234 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLL-DDLTHKLADIIKCNNELIRNESSGAAT 292
R + LT V I + G + DDLT+KL DIIK + + R E GA
Sbjct: 238 RPEWMILTV--MPVPPPPVRPSIAVDGGAMRSEDDLTYKLGDIIKASVNVRRCEQEGAPA 295
Query: 293 HVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 352
HVI E ++LQFHVAT DND+ G+P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVD
Sbjct: 296 HVITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVD 355
Query: 353 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
FSARTVIT DPNL +D+VGVPRSIA N+T+PE VTP+N+
Sbjct: 356 FSARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNI 394
>gi|328772047|gb|EGF82086.1| hypothetical protein BATDEDRAFT_86817 [Batrachochytrium
dendrobatidis JAM81]
Length = 1797
Score = 347 bits (889), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 204/400 (51%), Positives = 258/400 (64%), Gaps = 28/400 (7%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S APLR VK VQFGILSP+E + MSV + I+ E M+ RPKLGGL+DPR G IDR+ +
Sbjct: 13 SSAPLRKVKTVQFGILSPEETKAMSVAK--IEHFELMDNDRPKLGGLLDPRLGTIDRNFK 70
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
CQTC NMT+CPGHFGHI+LAKPVFH GF+ K+L CVC YC KL V S+ R V+
Sbjct: 71 CQTCGENMTDCPGHFGHIELAKPVFHQGFLKIIKKVLECVCHYCGKLKVDESNE--RFVL 128
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
+ RRR ++ LCK K +CEGG+E ++ G + PN +KK HGGCG+ QP
Sbjct: 129 FRRIKSRRRRFHEVWQLCKTKTVCEGGEEQ--SEGGQQKPNGHPHKKP-HGGCGQKQPVY 185
Query: 186 RRSGLDLTAEWKHVNEDS---QEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA 242
R + L + A +K ++ + + I +T + L R + + + L+A
Sbjct: 186 RSAILKIMANFKATKDEDGKHEAQTIEMTPEKTL--------TLLRSISDQDATDMGLSA 237
Query: 243 EWKH----------VNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAAT 292
+W V I + G G DDLTHKL DIIK N L R+E+ GA
Sbjct: 238 DWARPEWMIITTLPVPPMPVRPSISMDGAGRGEDDLTHKLMDIIKANISLKRHETEGAPA 297
Query: 293 HVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 352
H++ E +LQFHVAT +ND+ LP+AMQKSG+PLK+I ARLKGKEGR+RGNLMGKRVD
Sbjct: 298 HIVNEFENLLQFHVATYMNNDIANLPQAMQKSGRPLKSIAARLKGKEGRLRGNLMGKRVD 357
Query: 353 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
FSARTVIT DPNL IDQVGVPRSIA+N+TFPE VTP+N+D
Sbjct: 358 FSARTVITGDPNLSIDQVGVPRSIARNLTFPETVTPYNID 397
>gi|308198333|ref|XP_001386996.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
gi|149388976|gb|EAZ62973.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
Length = 1739
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 189/395 (47%), Positives = 253/395 (64%), Gaps = 26/395 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+LSP+E+R +SV + I++PETM+ P+ GGL DPR G IDR+
Sbjct: 8 SSAPLRSVKEVQFGLLSPEEVRAISVAK--IEYPETMDQTTKTPREGGLNDPRLGSIDRN 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RCQTC +M ECPGHFGHI+LAKPVFH+GF+ K K+ CVC +C KLL+ ++P +
Sbjct: 66 FRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDENNPAMAQ 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ K + +R A ++ LCK K +C E DI ++GA + + GGCG QP
Sbjct: 126 AI-KIRDPKKRFNA-VWQLCKAKMVC----ETDIIEEGATETTT-------RGGCGHTQP 172
Query: 184 NIRRSGLDLTAEWKH---VNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPN---IRRS 236
IRR GL L W+H E+ Q ++ LT +L + K C R N R
Sbjct: 173 TIRRDGLKLWGTWRHNKNFEENEQPERRLLTPSEILNVLKHISSLDCLRLGFNEDYARPE 232
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ +T T +G DDLT KLAD++K N + R E G+ HVI+
Sbjct: 233 WMLITVLPVPPPPVRPSIAFNDTARGE--DDLTFKLADVLKANINVQRLEMDGSPQHVIS 290
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFHVAT DND+ G P+A+QK+G+P+K+I+ARLKGKEGR+RGNLMGKRVDFSAR
Sbjct: 291 EFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSAR 350
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
TVI+ DPNL +DQVGVP SIA+ +++PE+VTP+N+
Sbjct: 351 TVISGDPNLDLDQVGVPISIARTLSYPEVVTPYNI 385
>gi|403215001|emb|CCK69501.1| hypothetical protein KNAG_0C03970 [Kazachstania naganishii CBS
8797]
Length = 1721
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 192/395 (48%), Positives = 253/395 (64%), Gaps = 24/395 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+ SP+E+R +SV + IKFPETM+ R K+GGL DPR G IDR+
Sbjct: 7 SSAPLRTVKEVQFGLFSPEEVRAISVAK--IKFPETMDETQTRAKIGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M+ECPGHFGHIDLAKPVFHVGF+TK K+ CVC +C KLL+ ++ ++R
Sbjct: 65 LKCQTCQEGMSECPGHFGHIDLAKPVFHVGFITKIKKVCECVCMHCGKLLLDENNEQMRQ 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
V+ K +R A + LCK K +C E D+ + DP L ++ GGCG QP
Sbjct: 125 -VMAIKDPKKRFNA-TWALCKTKMVC----ETDVPSEN--DPTKLVSR----GGCGNTQP 172
Query: 184 NIRRSGLDLTAEWKH---VNEDSQEKKIPLTGKGVLLNK---KQGHGGCGRYQPNIRRSG 237
+R+ GL L WK + + E+++ T + + + K + G + R
Sbjct: 173 TVRKDGLKLVGSWKRKKTIEGEEPEQRVLSTEEILNIFKHISTEDFIRLGFNEEFSRPEW 232
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ LT + +G DDLT KLADI+K N L E +GA H I E
Sbjct: 233 MILTVLPVPPPPVRPSISFNESQRGE--DDLTFKLADILKANISLETLEHNGAPHHAIEE 290
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
+LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFSART
Sbjct: 291 AESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSART 350
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 351 VISGDPNLELDQVGVPKSIARTLTYPEVVTPYNID 385
>gi|372292153|gb|AEX91899.1| RNA polymerase II largest subunit [Peltigera membranacea]
Length = 1737
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 192/407 (47%), Positives = 262/407 (64%), Gaps = 33/407 (8%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQG 58
+ S APLR ++++QFG+LSP+EI+ MSV I++PETM+ RP+ GL DPR G
Sbjct: 4 LTFQPSSAPLRSIQEIQFGLLSPEEIKNMSVAP--IEYPETMDEANQRPRHMGLADPRLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
IDR+ +C TC NM+ECPGHFGHI+LA PVFHVGF+TK K+L VC C K+L+ S+
Sbjct: 62 SIDRAIKCGTCDENMSECPGHFGHIELAVPVFHVGFMTKIKKLLETVCHNCGKILLDESN 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGC 178
++ L+ + RR A ++ CK K +C D + + D A P+ Q K HGGC
Sbjct: 122 ADFKN-ALRFRDPKRRFDA-MWKACKPKMVC---DMLVLADDDA--PDKSQEPKHDHGGC 174
Query: 179 GRYQPNIRRSGLDLTAEWKHV--NEDSQEKKIPLTGKGVLLNKKQGHGGCGRY--QPNIR 234
G QP IR+ GL LT WK +E+SQ++K P+T + L R+ +I+
Sbjct: 175 GNRQPEIRKEGLKLTGTWKARKDDEESQDEKRPITPQNAL--------NIFRHISSEDIQ 226
Query: 235 RSGLDLT---AEWKHVN-----EDSQEKKIPLTGKGVLL--DDLTHKLADIIKCNNELIR 284
+ GL++ EW + I + G + DDLT+KL DII+ N +
Sbjct: 227 KMGLNVDYARPEWMIITVLPVPPPPVRPSIAVDGGNGMRGEDDLTYKLGDIIRANGNVRT 286
Query: 285 NESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRG 344
E+ G+ HV+AE ++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RG
Sbjct: 287 CEAEGSPAHVVAEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRG 346
Query: 345 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 347 NLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 393
>gi|389750938|gb|EIM92011.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Stereum hirsutum FP-91666 SS1]
Length = 1703
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 192/403 (47%), Positives = 250/403 (62%), Gaps = 28/403 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFGILSP+EI+ SV + ++ PE M+ +PK+GGLMDPR G IDR+
Sbjct: 9 SAAPLRKVKEVQFGILSPEEIKAYSVAK--VEHPEVMDEATHKPKMGGLMDPRMGTIDRN 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M+ECPGHFGHI+LA+PVFH GF+ K KIL +C C KL S P D
Sbjct: 67 FKCQTCGEGMSECPGHFGHIELARPVFHPGFIIKVKKILESICVNCGKLKADISDPHFAD 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + + R A ++ CKGK ICE + + +DGA + K GHGGCG QP
Sbjct: 127 KIRHVR-DPKTRMAVVWGHCKGKMICEADEPKEDGEDGAAQGPA----KPGHGGCGHPQP 181
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA- 242
IR+ GL L ++K +D ++ K L L + + + I S L L
Sbjct: 182 QIRKEGLKLFLQYKKSKDDDEDMK-SLQPDKRLFTASEVYTTLKK----ISESDLHLLGL 236
Query: 243 -------EWKHVN-----EDSQEKKIPLTGKGVLL-DDLTHKLADIIKCNNELIRNESSG 289
EW + I + G + DDLT+KL DIIK + + R E G
Sbjct: 237 SDEYARPEWMILTVMPVPPPPVRPSIAVDGGAMRSEDDLTYKLGDIIKASANVRRCEQEG 296
Query: 290 AATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGK 349
A HVI E ++LQFHVAT DND+ G+P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGK
Sbjct: 297 APAHVITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGK 356
Query: 350 RVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
RVDFSARTVIT DPNL +D+VGVP+SIA +T+PE VTP+N++
Sbjct: 357 RVDFSARTVITGDPNLELDEVGVPKSIAMTLTYPERVTPYNIE 399
>gi|430812931|emb|CCJ29676.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1762
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 191/399 (47%), Positives = 256/399 (64%), Gaps = 22/399 (5%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQG 58
+A A S A LR V++VQFGILSP+EIR MSV + I++PE M+ G RP++GGL+DPR G
Sbjct: 5 LAFAPSSAVLRQVEEVQFGILSPEEIRAMSVAK--IEYPEIMDESGHRPRIGGLLDPRLG 62
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
IDR+ +CQTC +M ECPGHFGHI+LAKPVFH+GF+ K KIL CVC C KL +
Sbjct: 63 TIDRNFKCQTCGESMAECPGHFGHIELAKPVFHIGFLMKIKKILECVCLNCGKLKADENS 122
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGC 178
PK + + + R ++++CK K ICE ++ D E + + GHGGC
Sbjct: 123 PKFLES--QRYRDPKSRLIAVWNICKTKMICEIDQPVN---DHYEAKSMI-----GHGGC 172
Query: 179 GRYQPNIRRSGLDLTAEWKHVNE---DSQEKKI--PLTGKGVLLN-KKQGHGGCGRYQPN 232
G QP IR+ GL L A +K + D ++++ PL V + + G +
Sbjct: 173 GNLQPIIRKDGLKLWATYKRPKDSESDLPDRRLLTPLEVYTVFKHISSEDMAKMGLNEEY 232
Query: 233 IRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAAT 292
R + +T + T +G DDLTHKL+DIIK N + R E GA
Sbjct: 233 ARPDWMIITVLPVPPPSVRPSISVDGTCRGE--DDLTHKLSDIIKANANVRRYEQEGAPM 290
Query: 293 HVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 352
HV++E ++LQFHVAT DND+ G P+A+QK+G+PLK+I+ARLKGKEGR+RGNLMGKRVD
Sbjct: 291 HVVSEYEQLLQFHVATYMDNDIAGQPQALQKTGRPLKSIRARLKGKEGRLRGNLMGKRVD 350
Query: 353 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
FSARTVIT DPNL +D++GVPRSIA+ +T+PE VTP+N+
Sbjct: 351 FSARTVITGDPNLSLDELGVPRSIARILTYPETVTPYNI 389
>gi|326498629|dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1859
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 187/398 (46%), Positives = 246/398 (61%), Gaps = 20/398 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A + V+ VQFGILSPDEIR+MSV I+ ETME G+ K GGL DPR G IDR +
Sbjct: 8 SPAEVAKVQLVQFGILSPDEIRQMSVVV--IEHAETMERGKAKPGGLSDPRLGTIDRKIK 65
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C TC M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L K + +
Sbjct: 66 CDTCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEEETKFKQAL 125
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
+ R R+ IYD CK K IC GGDE+D+ +D + GCG QPNI
Sbjct: 126 KIRNPKHRLRR--IYDACKSKKICAGGDELDV-----QDQQDTDEPVKKRSGCGAQQPNI 178
Query: 186 RRSGLDLTAEWKHVNEDSQ---------EKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRR 235
G+ + AE+K + S E+K L+ + VL + K+ C N +
Sbjct: 179 TVDGMKMVAEFKATKKKSDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKY 238
Query: 236 SGLD-LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
+ D + + + + + DDLTH+LA II+ N L + E +GA H+
Sbjct: 239 ARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRKQERNGAPAHI 298
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I E ++LQFH+AT DND+PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFS
Sbjct: 299 ITEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 358
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDPN+ IDQ+GVP SIA N+T+PE VTP+N++
Sbjct: 359 ARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIE 396
>gi|520517|gb|AAA50229.1| RNA polymerase II, largest subunit, partial [Ilyanassa obsoleta]
Length = 1343
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 178/361 (49%), Positives = 225/361 (62%), Gaps = 97/361 (26%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPVFHV F+ KTIKI+RCVCF+CSKLLV P K++D++ K+KG ++R A +YD
Sbjct: 1 HIELAKPVFHVAFLVKTIKIMRCVCFFCSKLLVDPESNKMKDILGKSKGYPQKRLAHVYD 60
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
LCK + +C+GGDEMD KK N+
Sbjct: 61 LCKTRKVCDGGDEMD--------------KK---------------------------NQ 79
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 261
D P G+ N +GHGGCGRYQP +RR+GL++ AEWK++NE+SQE+K+ ++ +
Sbjct: 80 D------PTAGESTEENAPKGHGGCGRYQPKLRRTGLEIVAEWKNINEESQERKMIVSAE 133
Query: 262 GVL--------------------------------------------------LDDLTHK 271
VL DDLTHK
Sbjct: 134 RVLEIFKRISDEESLMLGMDPRFARPDWMILTVFPVPPLPVRPAVVMFGSARNQDDLTHK 193
Query: 272 LADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAI 331
LADI+K NN+L RNE +GAA H+I E+ KMLQ+H +TL DN+MPGLPRA+QKSG+PLK++
Sbjct: 194 LADIVKANNQLRRNEQNGAAAHIIFEDSKMLQYHCSTLVDNEMPGLPRAVQKSGRPLKSV 253
Query: 332 KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
K RLKGKEGR+RGNLM KRVDFS RTVITPDPNLR+DQVGVPRSIA N+TFPE+VTPFN+
Sbjct: 254 KQRLKGKEGRVRGNLMDKRVDFSGRTVITPDPNLRVDQVGVPRSIAHNLTFPELVTPFNI 313
Query: 392 D 392
D
Sbjct: 314 D 314
>gi|403175763|ref|XP_003334524.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375171744|gb|EFP90105.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 1703
Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 189/408 (46%), Positives = 256/408 (62%), Gaps = 34/408 (8%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S AP R V+ +QFGI+ PDEI+ SV + I+ PET E G PK+GGL DPR G IDR+
Sbjct: 9 SSAPTRRVRTIQFGIMGPDEIKGFSVAK--IEHPETYEEGGIHPKVGGLSDPRMGTIDRN 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC +M+ CPGHF HI+LA+ V+HVGF+ + KIL CVC CSKL +
Sbjct: 67 MKCQTCGEDMSTCPGHFAHIELARAVYHVGFLNRVKKILECVCVQCSKLKSDVVTDPALE 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSL--QNKKQGHGGCGRY 181
++ + ++R ++ LC+GKNICE D+N D E+P+ ++ +GHGGCG
Sbjct: 127 LIARRIKDPKKRFTAVHQLCRGKNICEA----DVNDDKPENPDEPVPDDQPKGHGGCGHL 182
Query: 182 QPNIRRSGLDLTAEW-KHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRR-SGLD 239
QP IR+ GL + ++ K E+ +E G G L ++ + Q +RR S D
Sbjct: 183 QPQIRKEGLKMFLQYTKRKGEEDEE------GVGTLAGTERKPLPASQAQAILRRISDED 236
Query: 240 LTAEWKHVNEDSQE---------------KKIPLTGKGVL-LDDLTHKLADIIKCNNELI 283
L H +E E I + G DDLT+KLA++IK N +
Sbjct: 237 LQILGLHASEARPEWMVLTVLPIPPPPVRPSIAMDGGATRGEDDLTYKLAEVIKANQAVR 296
Query: 284 RNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIR 343
+ ES GA HVI E +LQ+H+AT DND+PG P+A+QKSG+P+K+++ARLKGKEGR+R
Sbjct: 297 KFESEGAPAHVITEFETLLQWHIATYMDNDLPGQPQALQKSGRPIKSLRARLKGKEGRLR 356
Query: 344 GNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
GNLMGKRVDFSARTVIT DPNL++DQVGVP SIA+N+T+PE VTP+N+
Sbjct: 357 GNLMGKRVDFSARTVITGDPNLQLDQVGVPYSIARNLTYPERVTPYNI 404
>gi|363755924|ref|XP_003648178.1| hypothetical protein Ecym_8065 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891378|gb|AET41361.1| Hypothetical protein Ecym_8065 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1743
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 190/397 (47%), Positives = 253/397 (63%), Gaps = 27/397 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APLR +K+VQFG+ SP+E+R +SV + I+FPETM+ R K+GGL DPR G IDR+
Sbjct: 7 SSAPLRTIKEVQFGLFSPEEVRAISVAK--IEFPETMDETQMRAKVGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M +CPGHFGHI+LAKPVFH+GF++K K+ CVC +C KLL+ + +R
Sbjct: 65 YKCQTCGEGMNDCPGHFGHIELAKPVFHIGFISKIKKVCECVCMHCGKLLLDEYNELMRQ 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ K K RR A ++ LCK K +C D +DP +K GGCG QP
Sbjct: 125 AI-KIKDPKRRFNA-VWSLCKSKMVC------DTEVPSEDDP----SKYISRGGCGNAQP 172
Query: 184 NIRRSGLDLTAEWK----HVNEDSQEKKIPLTGKGVLLNKK----QGHGGCGRYQPNIRR 235
+IR+ GL L WK + D EK+I L+ + +L K + G + R
Sbjct: 173 SIRKDGLSLVGTWKKDKNSEDSDQPEKRI-LSAEEILNVFKHITPEDSLRLGFNEDFARP 231
Query: 236 SGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVI 295
+ LT + +G DDLT+KL DI+K N + R E +G+ HVI
Sbjct: 232 EWMILTVLPVPPPPVRPSISFNESQRGE--DDLTYKLGDILKANINVQRLEINGSPQHVI 289
Query: 296 AENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 355
E+ +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFSA
Sbjct: 290 QESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSA 349
Query: 356 RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
RTVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 350 RTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNID 386
>gi|326431524|gb|EGD77094.1| polymerase II polypeptide A [Salpingoeca sp. ATCC 50818]
Length = 1834
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 194/395 (49%), Positives = 247/395 (62%), Gaps = 11/395 (2%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S APLR K+++FGILSPDEI+ SV E I PE E G PK GGL DPR G IDR R
Sbjct: 9 SVAPLRKAKRIKFGILSPDEIKAGSVCE--ITTPEHQENGVPKPGGLSDPRMGPIDRDLR 66
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+TC G +ECPGHFGHIDLAKPV HVG ++K +++LRC+C CSKLLV S +V++++
Sbjct: 67 CETCHGTASECPGHFGHIDLAKPVVHVGMISKIVQVLRCICKSCSKLLVDLSDDEVKEIL 126
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINK-DGAEDPNSLQNKKQGHGGCGRYQP- 183
+TK ++R I C G+ +CE G MD ++ D + + +KQGH GCG QP
Sbjct: 127 RRTKNDPKKRLKAIAKKCAGRKVCEAGTGMDDDRPDDIQLSPEEELEKQGHSGCGAEQPK 186
Query: 184 NIRRS-----GLDLTAEWKHVNEDSQEKKIPLTGKGVLL-NKKQGHGGCGRYQPNIRRSG 237
++RRS L++ E K N + + LL N + P+ R
Sbjct: 187 SVRRSTEPGHTLEIIMETKDDNGLVTARTMSTEEIYELLHNISHADAEALGFDPHHTRPD 246
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
L V + + + G DDLT++ A+I+K NN L NE SGA HVI E
Sbjct: 247 W-LMITCLPVPPLAVRPSVQMGSGGRSHDDLTNQYAEIVKANNGLRENEQSGAPRHVIEE 305
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
N+ LQF VATL DN++P +P +MQKSG+P+KAI RLKGKEGRIRGNLMGKRVDFSART
Sbjct: 306 NVLYLQFKVATLFDNNLPHMPMSMQKSGRPIKAISQRLKGKEGRIRGNLMGKRVDFSART 365
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VI PDPNL IDQVGVP S+A +T PE VT FN++
Sbjct: 366 VINPDPNLEIDQVGVPTSVALTLTVPERVTNFNIN 400
>gi|241959608|ref|XP_002422523.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
gi|223645868|emb|CAX40531.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
Length = 1735
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 192/395 (48%), Positives = 252/395 (63%), Gaps = 26/395 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+LSP+E+R +SV + I++PETM+ RP+ GGL DPR G IDR+
Sbjct: 8 SSAPLRSVKEVQFGLLSPEEVRAISVAK--IEYPETMDQTTKRPREGGLNDPRLGSIDRN 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RCQTC +M ECPGHFGHI+LAKPVFH+GF+ K K VC +C KLL+ ++P +
Sbjct: 66 FRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHCGKLLLDETNPAMAQ 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ K + +R A ++ LCK K +C E D N+D D S GGCG QP
Sbjct: 126 AI-KIRDPKKRFNA-VWSLCKSKMVC----ETDNNEDEMTDQPS-------RGGCGHPQP 172
Query: 184 NIRRSGLDLTAEW---KHVNEDSQEKKIPLTGKGVL-LNKKQGHGGC---GRYQPNIRRS 236
IRR GL L W K+ +++ Q ++ LT +L + K C G + R
Sbjct: 173 TIRRDGLKLWGTWKQNKNYDDNEQPERRLLTPSEILNVFKHISPEDCHKMGFNEDYARPE 232
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ +T T +G DDLT KLADIIK N + R E+ G+ HVI+
Sbjct: 233 WMLITVLPVPPPPVRPSIAFNETARGE--DDLTFKLADIIKANINVQRLETDGSPQHVIS 290
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFHVAT DND+ G P+A+QK+G+P+K+I+ARLKGKEGR+RGNLMGKRVDFSAR
Sbjct: 291 EFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSAR 350
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
TVI+ DPNL +DQVGVP SIA+ +T+PEIVTP+N+
Sbjct: 351 TVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNI 385
>gi|238880428|gb|EEQ44066.1| DNA-directed RNA polymerase II largest subunit [Candida albicans
WO-1]
Length = 1742
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 191/395 (48%), Positives = 252/395 (63%), Gaps = 26/395 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+LSP+E+R +SV + I++PETM+ RP+ GGL DPR G IDR+
Sbjct: 8 SSAPLRSVKEVQFGLLSPEEVRAISVAK--IEYPETMDQTTKRPREGGLNDPRLGSIDRN 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RCQTC +M ECPGHFGHI+LAKPVFH+GF+ K K VC +C KLL+ ++P +
Sbjct: 66 FRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHCGKLLLDETNPAMAQ 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ K + +R A ++ LCK K +C E D N+D D + GGCG QP
Sbjct: 126 AI-KIRDPKKRFNA-VWSLCKTKMVC----ETDNNEDEMTD-------QPSRGGCGHPQP 172
Query: 184 NIRRSGLDLTAEW---KHVNEDSQEKKIPLTGKGVL-LNKKQGHGGC---GRYQPNIRRS 236
IRR GL L W K+ +++ Q ++ LT +L + K C G + R
Sbjct: 173 TIRRDGLKLWGTWKQNKNYDDNDQPERRLLTPSEILNVFKHISPEDCYKMGFNEDYARPE 232
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ +T T +G DDLT KLADIIK N + R E+ G+ HVI+
Sbjct: 233 WMLITVLPVPPPPVRPSIAFNETARGE--DDLTFKLADIIKANINVQRLETDGSPQHVIS 290
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFHVAT DND+ G P+A+QK+G+P+K+I+ARLKGKEGR+RGNLMGKRVDFSAR
Sbjct: 291 EFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSAR 350
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
TVI+ DPNL +DQVGVP SIA+ +T+PEIVTP+N+
Sbjct: 351 TVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNI 385
>gi|354545641|emb|CCE42368.1| hypothetical protein CPAR2_200110 [Candida parapsilosis]
Length = 1746
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 191/398 (47%), Positives = 249/398 (62%), Gaps = 32/398 (8%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+LSP+E+R +SV + I++PETM+ RP+ GGL DPR G IDR+
Sbjct: 8 SNAPLRSVKEVQFGLLSPEEVRAISVAK--IEYPETMDQATKRPREGGLNDPRLGSIDRN 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC +M ECPGHFGHI+LAKPVFH+GF+ K K+ +C +C KLL+ S+P +
Sbjct: 66 FKCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCESICMHCGKLLLDESNPLMAQ 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGG---DEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+ K + +R A ++ +CK K +CE +EM N GGCG
Sbjct: 126 AI-KIRDPKKRFNA-VWSICKSKMVCETATSEEEM--------------NDHNVRGGCGH 169
Query: 181 YQPNIRRSGLDLTAEWKH---VNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPN---I 233
QP IRR GL L WKH E+ Q ++ LT +L + K C R N
Sbjct: 170 TQPTIRRDGLKLWGTWKHNKNFEENDQPERRLLTPSEILNVFKHISPEDCYRLGFNEDYA 229
Query: 234 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATH 293
R + +T T +G DDLT KLADIIK N + R E G+ H
Sbjct: 230 RPEWMLITVLPVPPPPVRPSIAFNDTARGE--DDLTFKLADIIKANINVQRLEIDGSPQH 287
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
VI+E +LQFHVAT DND+ G P+A+QK+G+P+K+I+ARLKGKEGR+RGNLMGKRVDF
Sbjct: 288 VISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDF 347
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
SARTVI+ DPNL +DQVGVP SIA+ +T+PEIVTP+N+
Sbjct: 348 SARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNI 385
>gi|255719376|ref|XP_002555968.1| KLTH0H02046p [Lachancea thermotolerans]
gi|238941934|emb|CAR30106.1| KLTH0H02046p [Lachancea thermotolerans CBS 6340]
Length = 1740
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 188/396 (47%), Positives = 253/396 (63%), Gaps = 25/396 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFGI SP+E+R +SV + I+FPETM+ R K+GGL DPR G IDR+
Sbjct: 7 SSAPLRTVKEVQFGIFSPEEVRAISVAK--IEFPETMDETQMRAKVGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M +CPGHFGHI+LAKPVFH+G+++K K+ CVC +C KLL+ H ++
Sbjct: 65 YKCQTCGEGMNDCPGHFGHIELAKPVFHIGYISKIKKVCECVCMHCGKLLLD-EHSELMR 123
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+K K RR A ++ LCK K +C E ++ D DP ++ GGCG QP
Sbjct: 124 QAIKIKDPKRRFNA-VWSLCKAKMVC----ETEVPSDN--DPAQYVSR----GGCGNTQP 172
Query: 184 NIRRSGLDLTAEWKH---VNEDSQEKKIPLTGKGVLLNKK----QGHGGCGRYQPNIRRS 236
++R+ GL L WK ++ Q ++ ++ VL K + G + R
Sbjct: 173 SVRKDGLSLVGTWKKDKGADDADQPERRVISADEVLNVFKHISPEDSVRLGFNEDFARPE 232
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ LT T +G DDLT+KL DI+K N + R E +G+ HVI
Sbjct: 233 WMILTVLPVPPPPVRPSISFNETQRGE--DDLTYKLGDILKANINVQRLEINGSPQHVIQ 290
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E+ +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 291 ESEALLQFHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSAR 350
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 351 TVISGDPNLDLDQVGVPKSIARTLTYPEVVTPYNID 386
>gi|68473217|ref|XP_719414.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
gi|46441230|gb|EAL00529.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
Length = 1728
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 191/395 (48%), Positives = 252/395 (63%), Gaps = 26/395 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+LSP+E+R +SV + I++PETM+ RP+ GGL DPR G IDR+
Sbjct: 8 SSAPLRSVKEVQFGLLSPEEVRAISVAK--IEYPETMDQTTKRPREGGLNDPRLGSIDRN 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RCQTC +M ECPGHFGHI+LAKPVFH+GF+ K K VC +C KLL+ ++P +
Sbjct: 66 FRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHCGKLLLDETNPAMAQ 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ K + +R A ++ LCK K +C E D N+D D + GGCG QP
Sbjct: 126 AI-KIRDPKKRFNA-VWSLCKTKMVC----ETDNNEDEMTD-------QPSRGGCGHPQP 172
Query: 184 NIRRSGLDLTAEW---KHVNEDSQEKKIPLTGKGVL-LNKKQGHGGC---GRYQPNIRRS 236
IRR GL L W K+ +++ Q ++ LT +L + K C G + R
Sbjct: 173 TIRRDGLKLWGTWKQNKNYDDNDQPERRLLTPSEILNVFKHISPEDCYKMGFNEDYARPE 232
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ +T T +G DDLT KLADIIK N + R E+ G+ HVI+
Sbjct: 233 WMLITVLPVPPPPVRPSIAFNETARGE--DDLTFKLADIIKANINVQRLETDGSPQHVIS 290
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFHVAT DND+ G P+A+QK+G+P+K+I+ARLKGKEGR+RGNLMGKRVDFSAR
Sbjct: 291 EFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSAR 350
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
TVI+ DPNL +DQVGVP SIA+ +T+PEIVTP+N+
Sbjct: 351 TVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNI 385
>gi|225459758|ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 186/403 (46%), Positives = 254/403 (63%), Gaps = 20/403 (4%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
M S A + V+ VQFGILSPDEIR+MSV + I+ ET E G+PK GGL DPR G I
Sbjct: 3 MRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHSETTERGKPKPGGLSDPRLGTI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR +C+TC NM ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+ ++R ++ I D CK K+ CEGGDE++ +++P K+ GGCG
Sbjct: 121 FKQAQKIRNPKNRLKK--ILDACKNKSKCEGGDEIETQALDSDEP-----VKKSRGGCGA 173
Query: 181 YQPNIRRSGLDLTAEWK---HVNEDSQ------EKKIPLTGKGVL-LNKKQGHGGCGRYQ 230
QP + G+ + AE+K N+D + E+K L+ + VL + K+ C
Sbjct: 174 QQPKLTIEGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLG 233
Query: 231 PNIRRSGLD-LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSG 289
N + + D + + + + + DDLTH+LA II+ N L R E +G
Sbjct: 234 LNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG 293
Query: 290 AATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGK 349
A H+I+E ++LQFHVAT DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGK
Sbjct: 294 APAHIISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGK 353
Query: 350 RVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
RVDFSARTVITPDP + ID++GVP SIA N+T+PE VTP+N++
Sbjct: 354 RVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIE 396
>gi|448524734|ref|XP_003869005.1| Rpo21 protein [Candida orthopsilosis Co 90-125]
gi|380353358|emb|CCG22868.1| Rpo21 protein [Candida orthopsilosis]
Length = 1732
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 191/398 (47%), Positives = 249/398 (62%), Gaps = 32/398 (8%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+LSP+E+R +SV + I++PETM+ RP+ GGL DPR G IDR+
Sbjct: 8 SNAPLRSVKEVQFGLLSPEEVRAISVAK--IEYPETMDQATKRPREGGLNDPRLGSIDRN 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC +M ECPGHFGHI+LAKPVFH+GF+ K K+ +C +C KLL+ S+P +
Sbjct: 66 FKCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCESICMHCGKLLLDESNPLMAQ 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGG---DEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+ K + +R A ++ +CK K +CE +EM N GGCG
Sbjct: 126 AI-KIRDPKKRFNA-VWSICKTKMVCETATSEEEM--------------NDHPTRGGCGH 169
Query: 181 YQPNIRRSGLDLTAEWKH---VNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPN---I 233
QP IRR GL L WKH E+ Q ++ LT +L + K C R N
Sbjct: 170 TQPTIRRDGLKLWGTWKHNKNFEENDQPERRLLTPSEILNVFKHISPEDCYRLGFNEDYA 229
Query: 234 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATH 293
R + +T T +G DDLT KLADIIK N + R E G+ H
Sbjct: 230 RPEWMLITVLPVPPPPVRPSIAFNDTARGE--DDLTFKLADIIKANINVQRLEIDGSPQH 287
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
VI+E +LQFHVAT DND+ G P+A+QK+G+P+K+I+ARLKGKEGR+RGNLMGKRVDF
Sbjct: 288 VISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDF 347
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
SARTVI+ DPNL +DQVGVP SIA+ +T+PEIVTP+N+
Sbjct: 348 SARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNI 385
>gi|392572014|gb|EIW65186.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1748
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 188/401 (46%), Positives = 249/401 (62%), Gaps = 25/401 (6%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVI 60
A S AP+R V++VQFGILSP+EI+ SV + I+ PE M+ +PKLGGLMDPR G I
Sbjct: 6 FAYSAAPIRKVREVQFGILSPEEIKAYSVAK--IEHPEVMDETTHKPKLGGLMDPRMGTI 63
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+ +CQTC M+ECPGHFGHI+LA+PVFH GF+ K KIL C+C C +L S P
Sbjct: 64 DRNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGRLKADSSDPT 123
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
D + + R QA +++ CK K ICE ++ ++ N+ K+GHGGCG
Sbjct: 124 FADRIRHIRDPKARMQA-VWNYCKSKMICEP------DEPKDDNDNADDEAKKGHGGCGA 176
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD 239
QP +R+ GL L ++K ++ + L L + + + + ++ GL
Sbjct: 177 TQPQVRKEGLKLFVQYKRGKDEDES----LQPDKRLFPPHEVYTALKKVSESDLHLLGLS 232
Query: 240 LTA---EWKHVNEDSQEKKIPLTGKGV------LLDDLTHKLADIIKCNNELIRNESSGA 290
+ EW + V DDLT+KL DIIK + + R E GA
Sbjct: 233 VEYARPEWMILTVLPVPPPPVRPSIAVDGGTMRSEDDLTYKLGDIIKASANVRRCEQEGA 292
Query: 291 ATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
HVI E ++LQFHVAT DND+ G+P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKR
Sbjct: 293 PAHVINEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKR 352
Query: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
VDFSARTVIT DPNL +D+VGVPRSIA N+TFPE VTP+N+
Sbjct: 353 VDFSARTVITGDPNLELDEVGVPRSIAMNLTFPERVTPYNI 393
>gi|365981561|ref|XP_003667614.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
gi|343766380|emb|CCD22371.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
Length = 1729
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 190/398 (47%), Positives = 250/398 (62%), Gaps = 29/398 (7%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+ SP+E+R +SV + I+FPETM+ R K+GGL DPR G IDR+
Sbjct: 7 SSAPLRTVKEVQFGLFSPEEVRAISVAK--IRFPETMDETQTRAKIGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M ECPGHFGHIDLAKPV HVGF+ K K+ VC +C KLL+ + ++R
Sbjct: 65 LKCQTCQEGMNECPGHFGHIDLAKPVLHVGFIAKIKKVCESVCMHCGKLLLDEHNEQMRQ 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ S++R +++LCK K IC + D+ D +DP L ++ GGCG QP
Sbjct: 125 AI--AIKDSKKRFNAVWNLCKTKMIC----DTDVPSD--DDPTQLISR----GGCGNAQP 172
Query: 184 NIRRSGLDLTAEW---KHVNE-DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD 239
+R+ GL L W K+ N+ D E+++ T + + + K R N +
Sbjct: 173 TVRKDGLKLVGSWKKEKNTNDGDEPEQRVLSTEEILNIFKHISPEDSTRLGFNEEFA--- 229
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW +N I DDLT KLADI+K N L E +GA H
Sbjct: 230 -RPEWMILNVLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHA 288
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFS
Sbjct: 289 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 349 ARTVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNID 386
>gi|366989121|ref|XP_003674328.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
gi|342300191|emb|CCC67948.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
Length = 1716
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 190/396 (47%), Positives = 251/396 (63%), Gaps = 25/396 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+ SP+E+R +SV + I+FPETM+ R K+GGL DPR G IDR+
Sbjct: 7 SSAPLRTVKEVQFGLFSPEEVRGISVAK--IRFPETMDETQTRAKIGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M ECPGHFGHIDLAKPVFHVGF+ K K+ VC +C KLL+ + ++R
Sbjct: 65 LKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCESVCMHCGKLLLDEHNEQMRQ 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ S++R ++ LCK K IC E D+ D +DP +L ++ GGCG QP
Sbjct: 125 AM--AIKDSKKRFNAVWTLCKTKMIC----ETDVPSD--DDPTTLISR----GGCGNAQP 172
Query: 184 NIRRSGLDLTAEWKH----VNEDSQEKKIPLTGKGVLLNKK---QGHGGCGRYQPNIRRS 236
+IR+ GL L WK + D E+++ T + + + K + G + R
Sbjct: 173 SIRKDGLKLVGSWKKEKNTSDGDEPEQRVLSTEEILNIFKHISPEDSTRMGFSEEFARPE 232
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ L + +G DDLT KLADI+K N L E +GA H I
Sbjct: 233 WMILCVLPVPPPPVRPSISFNESQRGE--DDLTFKLADILKANISLETLEHNGAPHHAIE 290
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 291 EAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSAR 350
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 351 TVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNID 386
>gi|406700979|gb|EKD04138.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 8904]
Length = 1771
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 187/402 (46%), Positives = 257/402 (63%), Gaps = 32/402 (7%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSS 64
S AP++ +K++QFG++SP+EI I+ PE M E G+ K+GGLMDP+ G IDR+
Sbjct: 8 SSAPVKRIKEIQFGVMSPEEI---------IEHPEVMDENGKQKVGGLMDPKMGTIDRNF 58
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
+CQTC+ M ECPGHFGHI+LA+PVFH GF+ K KIL CVC+ C KL V P V+++
Sbjct: 59 KCQTCSEGMAECPGHFGHIELARPVFHAGFIVKVKKILECVCYSCGKLKVDMRDPMVQNI 118
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAED---PNSLQNKKQGHGGCGRY 181
V + K Q R + I+DL K KN+CE D ++ N D +D NS K GHGGCG +
Sbjct: 119 VRRIKPQHRLKA--IWDLAKAKNVCE-ADSLEEN-DAEQDEYGENSGPKPKTGHGGCGHH 174
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
QP R+ GL L A +K + +E P ++ + H + P+ + L
Sbjct: 175 QPAYRKEGLKLIAVFKPSKDKQEEGSEPERRN---ISAAECHNILKKI-PDEDLLIMGLN 230
Query: 242 AEWKH----------VNEDSQEKKIPLTGKGVLL-DDLTHKLADIIKCNNELIRNESSGA 290
AE+ V + I + G + DDLT+KL +I+K + ++ + E+ G
Sbjct: 231 AEYARPDWMILTVLPVPPAAVRPSISVDGGAMRSEDDLTYKLGEILKASAQVRKLEAEGV 290
Query: 291 ATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
V+ E+ +LQFHVAT DND+ G+P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKR
Sbjct: 291 PPSVVNEHFDLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKR 350
Query: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VDFSARTVIT DPNL++DQVGVPRSIA +T+PE VTP+N++
Sbjct: 351 VDFSARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTPYNIN 392
>gi|353235719|emb|CCA67728.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Piriformospora indica DSM 11827]
Length = 1796
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 191/402 (47%), Positives = 259/402 (64%), Gaps = 22/402 (5%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVID 61
A S AP+R +K+VQFGILSPDEI+ SV + I+FPE M E + K GGL DPR G ID
Sbjct: 6 FAQSVAPIRQIKEVQFGILSPDEIKAYSVAK--IEFPEVMDEQQKQKEGGLADPRMGTID 63
Query: 62 RSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSP-SHPK 120
R+ +C TC M ECPGHFGHI+LA+PVFH+GF+ K KIL +C C KL V P + P+
Sbjct: 64 RNFKCATCGEGMAECPGHFGHIELARPVFHIGFLGKVKKILESICVNCGKLKVDPYTDPQ 123
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+ + T+ + R A ++ +CKGK CE DE+ ++ P + K+GHGGCG
Sbjct: 124 LASKLKLTRNNPKARMAVVWSVCKGKMTCE-PDEVKEDEQEGGPPVEV---KKGHGGCGH 179
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQ-----EKKIPLTGKGVLLNKKQGHGG----CGRYQP 231
+QP IR+ GL L +K N+D + ++K ++ + V ++ G +
Sbjct: 180 HQPQIRKEGLKLFFNYKKQNDDEESRPTVQEKRQVSAQDVFSVFRKISTTDLEMLGLSEA 239
Query: 232 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLL--DDLTHKLADIIKCNNELIRNESSG 289
R + LT V I + G GV DDLT+KLA+II+ + + R+E G
Sbjct: 240 YARPDWMILTV--LPVPPPPVRPSISVDG-GVRRSEDDLTYKLAEIIRASGNVRRSEQEG 296
Query: 290 AATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGK 349
A H+++E ++LQ+HVAT DND+ G+P+AMQKSG+P+KAI+ARLKGKEGR+RGNLMGK
Sbjct: 297 APPHIVSEYEQLLQYHVATYMDNDIAGVPQAMQKSGRPIKAIRARLKGKEGRLRGNLMGK 356
Query: 350 RVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RVDFSARTVIT DPNL++DQVGVPRSIA +T+PE VT +N+
Sbjct: 357 RVDFSARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTRYNI 398
>gi|409193803|gb|AFV31135.1| RNA polymerase II largest subunit [Amoeboaphelidium protococcarum]
Length = 1767
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 185/405 (45%), Positives = 249/405 (61%), Gaps = 30/405 (7%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDR 62
M +S AP R VK++QFG+LSP+EI+ SV + FPET E GRPKLGGL+DPR G +DR
Sbjct: 1 MDNSSAPQRRVKQLQFGLLSPEEIKAWSVCR--VDFPETYENGRPKLGGLLDPRMGTVDR 58
Query: 63 SSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVR 122
+ +C TC +M +C GHFGH++L + VFH+GF+ + KIL CVC C+KL V +P+
Sbjct: 59 NLKCLTCQESMNDCVGHFGHVELQRAVFHIGFMARIKKILECVCHSCAKLKVDTDNPRFL 118
Query: 123 DVVLKTKGQSRRRQAFIYDLCKGKNICEGG--DEMDINKDGAEDPNSLQNKKQGHGGCGR 180
K S+R +A +++LCKGK +CEG + A+D ++ + Q GCG
Sbjct: 119 QTQF-IKDPSKRLRA-VWELCKGKQMCEGSVIEASGQKAATADDSQNVSSSSQKRSGCGA 176
Query: 181 YQPNIRRSGLDLTAEWKH---VNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRS 236
QP+ ++ GL A +K E ++ K G V + K+ C RR
Sbjct: 177 VQPSYKKEGLKFVATFKQQQQFEESAEPNKDIFNGHKVYNIFKRISDDDC-------RRL 229
Query: 237 GLDLTAEWKHVN----------EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNE 286
GLD EW + I + G DDLT+KLADIIK N L +N
Sbjct: 230 GLD--PEWARPDWMLISVLPVPPPPVRPSIQVDGASRGEDDLTYKLADIIKANQNL-KNH 286
Query: 287 SSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNL 346
+ H+IAE +LQ+HV T +ND+ G+P+A QKSG+P+K+I+ARLKGKEGR+RGNL
Sbjct: 287 VDDSPAHIIAEYEALLQYHVVTYMNNDVSGIPQATQKSGRPIKSIRARLKGKEGRLRGNL 346
Query: 347 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
MGKRVDFSARTVIT DPN+ +D+VGVPR+IA+ +TFPEIVTPFN
Sbjct: 347 MGKRVDFSARTVITGDPNISLDEVGVPRTIAKTLTFPEIVTPFNF 391
>gi|374107397|gb|AEY96305.1| FADR086Cp [Ashbya gossypii FDAG1]
Length = 1738
Score = 340 bits (873), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 190/398 (47%), Positives = 248/398 (62%), Gaps = 29/398 (7%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APLR +K+VQFG+ SP+E+R +SV + I+FPETM+ R K+GGL DPR G IDR+
Sbjct: 7 SSAPLRTIKEVQFGLFSPEEVRAISVAK--IEFPETMDETQMRAKVGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M +CPGHFGHI+LAKPVFH+GF++K K+ CVC +C KLL+ + +R
Sbjct: 65 FKCQTCGEGMNDCPGHFGHIELAKPVFHIGFISKIKKVCECVCMHCGKLLLDEYNELMRQ 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ K K RR A ++ LCK K +C D +DP +K GGCG QP
Sbjct: 125 AI-KIKDPKRRFNA-VWSLCKAKMVC------DTEVPSEDDP----SKYISRGGCGNAQP 172
Query: 184 NIRRSGLDLTAEWKH----VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD 239
+IR+ GL L WK + D EK+I + + + K R N S
Sbjct: 173 SIRKDGLSLVGTWKKDKNAEDADQPEKRIISAEEILNVFKHISPEDSWRLGFNEDFS--- 229
Query: 240 LTAEW-----KHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V I DDLT+KL DI+K N + R E +G+ HV
Sbjct: 230 -RPEWMLLTVLPVPPPPVRPSISFNESQRGEDDLTYKLGDILKANINVQRLEINGSPQHV 288
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I E+ +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFS
Sbjct: 289 IQESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 349 ARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNID 386
>gi|302307500|ref|NP_984182.2| ADR086Cp [Ashbya gossypii ATCC 10895]
gi|442570012|sp|Q75A34.2|RPB1_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|299789031|gb|AAS52006.2| ADR086Cp [Ashbya gossypii ATCC 10895]
Length = 1745
Score = 340 bits (873), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 190/398 (47%), Positives = 248/398 (62%), Gaps = 29/398 (7%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APLR +K+VQFG+ SP+E+R +SV + I+FPETM+ R K+GGL DPR G IDR+
Sbjct: 7 SSAPLRTIKEVQFGLFSPEEVRAISVAK--IEFPETMDETQMRAKVGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M +CPGHFGHI+LAKPVFH+GF++K K+ CVC +C KLL+ + +R
Sbjct: 65 FKCQTCGEGMNDCPGHFGHIELAKPVFHIGFISKIKKVCECVCMHCGKLLLDEYNELMRQ 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ K K RR A ++ LCK K +C D +DP +K GGCG QP
Sbjct: 125 AI-KIKDPKRRFNA-VWSLCKAKMVC------DTEVPSEDDP----SKYISRGGCGNAQP 172
Query: 184 NIRRSGLDLTAEWKH----VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD 239
+IR+ GL L WK + D EK+I + + + K R N S
Sbjct: 173 SIRKDGLSLVGTWKKDKNAEDADQPEKRIISAEEILNVFKHISPEDSWRLGFNEDFS--- 229
Query: 240 LTAEW-----KHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V I DDLT+KL DI+K N + R E +G+ HV
Sbjct: 230 -RPEWMLLTVLPVPPPPVRPSISFNESQRGEDDLTYKLGDILKANINVQRLEINGSPQHV 288
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I E+ +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFS
Sbjct: 289 IQESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 349 ARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNID 386
>gi|401881990|gb|EJT46265.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 2479]
Length = 1787
Score = 340 bits (872), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 187/402 (46%), Positives = 257/402 (63%), Gaps = 32/402 (7%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSS 64
S AP++ +K++QFG++SP+EI I+ PE M E G+ K+GGLMDP+ G IDR+
Sbjct: 8 SSAPVKRIKEIQFGVMSPEEI---------IEHPEVMDENGKQKVGGLMDPKMGTIDRNF 58
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
+CQTC+ M ECPGHFGHI+LA+PVFH GF+ K KIL CVC+ C KL V P V+++
Sbjct: 59 KCQTCSEGMAECPGHFGHIELARPVFHAGFIVKVKKILECVCYSCGKLKVDMRDPMVQNI 118
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAED---PNSLQNKKQGHGGCGRY 181
V + K Q R + I+DL K KN+CE D ++ N D +D NS K GHGGCG +
Sbjct: 119 VRRIKPQHRLKA--IWDLAKAKNVCE-ADSLEEN-DAEQDEYGENSGPKPKTGHGGCGHH 174
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
QP R+ GL L A +K + +E P ++ + H + P+ + L
Sbjct: 175 QPAYRKEGLKLIAVFKPSKDKQEEGSEPERRN---ISAAECHNILKKI-PDEDLLIMGLN 230
Query: 242 AEWKH----------VNEDSQEKKIPLTGKGVLL-DDLTHKLADIIKCNNELIRNESSGA 290
AE+ V + I + G + DDLT+KL +I+K + ++ + E+ G
Sbjct: 231 AEYARPDWMILTVLPVPPAAVRPSISVDGGAMRSEDDLTYKLGEILKASAQVRKLEAEGV 290
Query: 291 ATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
V+ E+ +LQFHVAT DND+ G+P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKR
Sbjct: 291 PPSVVNEHFDLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKR 350
Query: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VDFSARTVIT DPNL++DQVGVPRSIA +T+PE VTP+N++
Sbjct: 351 VDFSARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTPYNIN 392
>gi|294654840|ref|XP_002770038.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
gi|199429189|emb|CAR65414.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
Length = 1749
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 185/395 (46%), Positives = 251/395 (63%), Gaps = 21/395 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+LSP+E+R +SV + I++PET++ +P+ GL DPR G IDR+
Sbjct: 8 SSAPLRSVKEVQFGLLSPEEVRAISVAK--IEYPETIDQSTKKPREAGLNDPRLGSIDRN 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC +M ECPGHFGHI+L KPVFH+GF+ K K+ CVC +C KLL+ ++ +
Sbjct: 66 FKCQTCGEDMAECPGHFGHIELTKPVFHIGFIAKIKKVCECVCMHCGKLLLDETNLAMSQ 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ K + +R A +++LCK K ICE N DPN + + GGCG QP
Sbjct: 126 AI-KIRDPKKRFNA-VWNLCKAKMICEAD-----NVTSENDPN-WKPDQPNKGGCGHTQP 177
Query: 184 NIRRSGLDLTAEW---KHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPN---IRRS 236
+RR GL L W K+ +E+ Q ++ LT +L + K C R N R
Sbjct: 178 TVRRDGLKLWGTWKQNKNFDENEQPERRLLTPSEILSVFKHINSQDCYRLGFNEDYARPE 237
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ +T T +G DDLT KLAD++K N + R E G+ HVI+
Sbjct: 238 WMLITVLPVPPPPVRPSIAFNDTARGE--DDLTFKLADVLKANINVQRLEMDGSPQHVIS 295
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFHVAT DND+ G P+A+QK+G+P+K+I+ARLKGKEGR+RGNLMGKRVDFSAR
Sbjct: 296 EFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSAR 355
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
TVI+ DPNL +DQVGVP SIA+ +++PEIVTP+N+
Sbjct: 356 TVISGDPNLDLDQVGVPISIARTLSYPEIVTPYNI 390
>gi|345565425|gb|EGX48374.1| hypothetical protein AOL_s00080g3 [Arthrobotrys oligospora ATCC
24927]
Length = 1760
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 197/424 (46%), Positives = 253/424 (59%), Gaps = 52/424 (12%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APLR +++VQFG+LSP+EI+ MSV I+FPETM+ RP+ GL DP G IDRS
Sbjct: 10 SSAPLRTIQEVQFGLLSPEEIKGMSVCH--IEFPETMDESKLRPRERGLNDPHMGSIDRS 67
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLL---------- 113
+C TC NM+ECPGHFGHI+LAKPVFH+GF+TK K+L VCF C K+L
Sbjct: 68 FKCATCDENMSECPGHFGHIELAKPVFHIGFITKIKKVLETVCFNCGKILLDENTLANIC 127
Query: 114 -----VSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSL 168
+S S+P+ D ++ + R A ++ +C+ KN+CE D N+ E PN
Sbjct: 128 ILRCVISKSNPQFVD-AMRIRDPKARFNA-VWRICRAKNVCES----DANEGEEEGPNDA 181
Query: 169 -----QNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIP----LTGKGVLLNK 219
+ +K HGGCG QP IR+ GL L WK ++ +E P LT + VL
Sbjct: 182 LPGEEKARKHKHGGCGNAQPTIRKDGLKLIGTWKPSKDEDEENPQPTKRNLTPQMVLNIF 241
Query: 220 KQGHGGCGRYQPNIRRSGLD---LTAEWKHVN---------EDSQEKKIPLTGKGVLLDD 267
K I + GL+ EW + S G DD
Sbjct: 242 KH------ITDDEITKMGLNKDYARPEWMVITVLAVPPPPVRPSISVDGMGGGGMRGEDD 295
Query: 268 LTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKP 327
LT KL DIIK NN L R E G+ HV+ E +LQFHVAT DND+ G P+A+QKSG+P
Sbjct: 296 LTFKLGDIIKANNNLQRCEQEGSPAHVVNEFESLLQFHVATFMDNDIAGQPQAVQKSGRP 355
Query: 328 LKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVT 387
+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRS A+ +T+PE VT
Sbjct: 356 IKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSTARILTYPETVT 415
Query: 388 PFNM 391
P+N+
Sbjct: 416 PYNI 419
>gi|50310581|ref|XP_455310.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644446|emb|CAG98018.1| KLLA0F05071p [Kluyveromyces lactis]
Length = 1720
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 184/397 (46%), Positives = 255/397 (64%), Gaps = 27/397 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APLR +K+VQFG+ SP+E+R +SV + I+FPETM+ + K+GGL DPR G IDR+
Sbjct: 7 SSAPLRTIKEVQFGLFSPEEVRGISVAK--IEFPETMDESQMKAKIGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M ECPGHFGHI+LAKPVFH+GF++K K+ VC +C KLL+ + ++R
Sbjct: 65 YKCQTCGEGMAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKLLLDEYNEQMRQ 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ K K RR A ++ LCK K +CE +DP ++ GGCG QP
Sbjct: 125 AI-KIKDPKRRFNA-VWTLCKAKMVCE------TEVPSPDDPTVFLSR----GGCGHIQP 172
Query: 184 NIRRSGLDLTAEWK---HVNEDSQEKKIPLTGKGVL-----LNKKQGHGGCGRYQPNIRR 235
+IR+ GL L WK + ++ Q +K ++ + +L ++ + G G + R
Sbjct: 173 SIRKDGLSLVGTWKKDKNADDSDQPEKRIISAEEILNVFKHISPEDGWR-LGFNEDFSRP 231
Query: 236 SGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVI 295
+ LT + +G DDLT+KL DI+K N + + E +G+ HVI
Sbjct: 232 EWMILTVLPVPPPPVRPSISFNESQRGE--DDLTYKLGDILKANINVQKLEINGSPQHVI 289
Query: 296 AENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 355
E+ +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFSA
Sbjct: 290 QESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSA 349
Query: 356 RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
RTVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 350 RTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNID 386
>gi|50289967|ref|XP_447415.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526725|emb|CAG60352.1| unnamed protein product [Candida glabrata]
Length = 1715
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 188/396 (47%), Positives = 251/396 (63%), Gaps = 25/396 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+ SP+EIR +SV + I+ PETM+ R K+GGL DPR G IDR+
Sbjct: 7 SSAPLRTVKEVQFGLFSPEEIRAISVAK--IRLPETMDETQTRAKIGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M ECPGHFGHIDLAKPVFH+GF+TK K+ +C +C KLL+ + ++R
Sbjct: 65 LKCQTCQEGMNECPGHFGHIDLAKPVFHIGFITKIKKVCESLCMHCGKLLLDEHNEQMRQ 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + K +R A ++ LCK K +C E D+ + +DP L ++ GGCG QP
Sbjct: 125 AI-QIKDPKKRFNA-VWSLCKTKMVC----ETDVPSE--DDPTKLISR----GGCGNTQP 172
Query: 184 NIRRSGLDLTAEWKHV----NEDSQEKKIPLTGKGVLLNKK---QGHGGCGRYQPNIRRS 236
IR+ GL L WK + D E+++ T + + + K + G + R
Sbjct: 173 TIRKDGLKLVGSWKKDKSTGDADEPEQRVLSTEEILNIFKHISPEDSYRLGFNEEFARPE 232
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ LT + +G DDLT KLADI+K N L E +GA H +
Sbjct: 233 WMILTVLPVPPPPVRPSISFNESQRGE--DDLTFKLADILKANISLETLEHNGAPHHAVE 290
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 291 EAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSAR 350
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 351 TVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNID 386
>gi|299755292|ref|XP_001828577.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
gi|298411158|gb|EAU93247.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
Length = 1745
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 190/405 (46%), Positives = 249/405 (61%), Gaps = 26/405 (6%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVI 60
A S AP+R VK+VQFGILSP+EI+ +SV + I++PE M+ +PKL GLMDPR G I
Sbjct: 6 FAFSAAPVRKVKEVQFGILSPEEIKAVSVVK--IEYPEVMDETTHKPKLQGLMDPRMGTI 63
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+ +CQTC M ECPGHFGHI+LA+PVFH GF K KIL C+C C KL + P
Sbjct: 64 DRNFKCQTCGEGMAECPGHFGHIELARPVFHPGFFNKVKKILECICVNCGKLKADITDPA 123
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+ + + ++R A ++D CK K ICE + + +G D K+GHGGCG
Sbjct: 124 FAEKIRHIR-NPKQRMAVVWDHCKTKTICEADEPREEGAEGDGD-----EPKKGHGGCGH 177
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKK--------IPLTGKGVLLNKKQGHG--GCGRYQ 230
QP IR+ GL + ++K +D E K I + + K H G
Sbjct: 178 QQPQIRKEGLKMFVQYKKSKDDDDEMKSLQPDKRLITPSEILTVFKKISDHDLHLLGLSD 237
Query: 231 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLL-DDLTHKLADIIKCNNELIRNESSG 289
R + LT V I + G + DDLT+KL DIIK ++ + R E G
Sbjct: 238 EYARPEWMILTV--LPVPPPPVRPSIAVDGGTMRSEDDLTYKLGDIIKASSNVKRCEEEG 295
Query: 290 AATHVIAENIKMLQ---FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNL 346
H+I+E ++LQ FHVAT DND G+P+A+QKSG+P+KAI+ARLKGKEGR+RGNL
Sbjct: 296 VPAHIISEFEQLLQASIFHVATYMDNDFAGIPQALQKSGRPVKAIRARLKGKEGRLRGNL 355
Query: 347 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
MGKRVDFSARTVIT DPNL +D+VGVP+SIA N+T+PE VTP+N+
Sbjct: 356 MGKRVDFSARTVITGDPNLELDEVGVPKSIAMNLTYPERVTPYNI 400
>gi|170100352|ref|XP_001881394.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644073|gb|EDR08324.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1742
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 193/396 (48%), Positives = 245/396 (61%), Gaps = 17/396 (4%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVI 60
A S AP+R VK+VQFGILSP+EI+ +SV + I+ PE M+ +PK+GGLMDPR G I
Sbjct: 6 FAYSAAPIRKVKEVQFGILSPEEIKAISVAK--IEHPEVMDEATHKPKMGGLMDPRMGTI 63
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+ +CQTC M+ECPGHFGHI+LA+PVFH GF+ K KIL +C C KL P
Sbjct: 64 DRNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIIKVKKILESICVNCGKLKADILDPN 123
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
D + + + R A ++ CK K CE D + D D K+GHGGCG
Sbjct: 124 FADKIRHIR-DPKTRMAVVWAHCKTKTTCETDDPKEEGADAEND-----EPKKGHGGCGH 177
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV--LLNKKQGHG--GCGRYQPNIRRS 236
QP IR+ GL L ++K +D K +T V + K H G R
Sbjct: 178 SQPQIRKEGLKLFLQYKKPKDDDDPDKRLITPSEVYTVFKKMSDHDLHLLGLSDEYARPE 237
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLL-DDLTHKLADIIKCNNELIRNESSGAATHVI 295
+ LT V I + G + DDLT+KL DIIK + + R E GA HVI
Sbjct: 238 WMILTV--MPVPPPPVRPSIAVDGGAMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVI 295
Query: 296 AENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 355
E ++LQFHVAT DND+ G+P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSA
Sbjct: 296 TEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSA 355
Query: 356 RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RTVIT DPNL +D+VGVPRSIA N+T+PE VTP+N+
Sbjct: 356 RTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNI 391
>gi|388580196|gb|EIM20513.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1752
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 186/408 (45%), Positives = 258/408 (63%), Gaps = 37/408 (9%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVI 60
+ S AP++ +K+VQFG++SP+E++ +SV + I PE ++ GRP+ GGLMDPR G I
Sbjct: 7 FSHSAAPVKGIKEVQFGLMSPEEMKSLSVAQ--IIHPEVIDESTGRPRQGGLMDPRMGTI 64
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+ +CQTC M ECPGHFGHI+LA+P FH+GF+TK KI+ +C C +LL + P+
Sbjct: 65 DRNFKCQTCGEGMAECPGHFGHIELARPAFHIGFLTKIKKIIESICVNCGRLLADENDPE 124
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+ +V +T +RR ++ C +IC+ + N++G + P S + GHGGCGR
Sbjct: 125 LAKIV-RTVPVGKRRFEAVHAYCTKISICKPDEP---NENGEDAPPS----QPGHGGCGR 176
Query: 181 YQPNIRRSGLDLTA---EWKHVNED---SQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIR 234
QP IRR L L + + KH ED +Q+ K L+ V K+ P+
Sbjct: 177 LQPAIRREALKLFSVNKQQKHDEEDDTKAQQDKRQLSAAEVYTLFKK--------IPDSD 228
Query: 235 RSGLDLTAE-----WKHVNEDSQEKKIPLTGKGV------LLDDLTHKLADIIKCNNELI 283
+ + L+AE W + V DDLT+KLADI+K L
Sbjct: 229 ITLMGLSAEFARPDWMIITVLPVPPPPVRPSIAVDGGATRSEDDLTYKLADILKYTATLR 288
Query: 284 RNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIR 343
R ES GA H+I+EN +++QFHVAT DND+ G+P+AMQKSG+P+K+I+ARLKGKEGR+R
Sbjct: 289 RFESEGAPAHIISENEQLVQFHVATYMDNDIAGIPQAMQKSGRPIKSIRARLKGKEGRLR 348
Query: 344 GNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
GNLMGKRVDFSARTVIT DPNL +D+VGVP SIA+ +T+PE VTP+N+
Sbjct: 349 GNLMGKRVDFSARTVITGDPNLELDEVGVPFSIARTLTYPERVTPYNI 396
>gi|302813666|ref|XP_002988518.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
gi|300143625|gb|EFJ10314.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
Length = 1797
Score = 336 bits (862), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 189/417 (45%), Positives = 258/417 (61%), Gaps = 47/417 (11%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A L VK+VQFG++SPDEIR+MSV + I+ ET + G+PK GGL DPR G IDR ++
Sbjct: 8 SPAELARVKRVQFGLMSPDEIRQMSVCK--IESSETYDRGKPKSGGLSDPRLGTIDRQTK 65
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+TC G+M ECPGHFGH++LAKP+FH+GF+ + +LRCVC+ CS +L + R+ +
Sbjct: 66 CETCGGSMAECPGHFGHLELAKPMFHIGFLKTVLALLRCVCYNCSHIL---ALEVCRETL 122
Query: 126 L-----------KTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQG 174
L K ++R + + CK K CEG + + DG +D + +++G
Sbjct: 123 LLCFIFGLFKLAKKAKNPKQRLKKVLECCKNKQKCEGNNN---DMDGEQDDQ--EGEQKG 177
Query: 175 HGGCGRYQPNIRRSGLDLTAEWKHVNE--DSQEKKIP--------LTGKGVL-LNKKQGH 223
HGGCG QP I G+ + AE+K + D Q++ +P LT + VL + K+
Sbjct: 178 HGGCGAQQPKITIDGMKIIAEFKVPKKKGDDQDQYLPEPVERKQQLTAERVLGILKRISD 237
Query: 224 GGCGRYQPNIRRSGLD---LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADI 275
C R GLD +W + + + DDLTH+LA I
Sbjct: 238 EEC-------RILGLDPQFARPDWMILQVLPIPPPPVRPSVMMDSSARSEDDLTHQLAMI 290
Query: 276 IKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARL 335
I+ NN L R E +GA TH+I E ++LQFH+AT DND+PG PRA Q+SG+P+K+I RL
Sbjct: 291 IRHNNNLKRQEQNGAPTHIINEFTQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICQRL 350
Query: 336 KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
K KEGRIRGNLMGKRVDFSARTVITPDPN+ ID++GVP SIA N+T+PE VTP+N++
Sbjct: 351 KAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNLE 407
>gi|320580596|gb|EFW94818.1| RNA polymerase II largest subunit [Ogataea parapolymorpha DL-1]
Length = 1730
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 185/397 (46%), Positives = 249/397 (62%), Gaps = 27/397 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S APLR V++VQFG+LSP+EIR +SV + I++PE M+ +P+ GL DPR G IDR+
Sbjct: 7 SSAPLRTVQEVQFGLLSPEEIRAISVAK--IEYPEIMDPTTNKPRENGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RCQTC+ +M ECPGHFGHI+LAKPVFH+GFV++ K+ CVC C K+L+ +
Sbjct: 65 FRCQTCSEDMQECPGHFGHIELAKPVFHIGFVSRIKKVCECVCMNCGKILLDEATNPQFA 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+K + +R A ++ LCK K +CE +D DG+ L+ GGCG QP
Sbjct: 125 AAIKIRDPKKRFNA-VWSLCKTKMVCEVDQPVD---DGSGRTQHLR------GGCGASQP 174
Query: 184 NIRRSGLDLTAEWKHVNED---SQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD 239
IRR GL L WK N D Q ++ ++ VL + K C + N +
Sbjct: 175 TIRRDGLKLWGSWKKSNSDDDGEQAERRQISAAEVLNIFKHISPEDCHKLGFNEDYA--- 231
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW + + T DDLT+KLADI+K N + R E G+ HV
Sbjct: 232 -RPEWMLITVLPVPPPPVRPSVAFTDSKRSEDDLTYKLADILKANINVQRFEMDGSPQHV 290
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I+E +LQ+HVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFS
Sbjct: 291 ISEFEALLQYHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFS 350
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
ARTVI+ DPNL +DQVGVP+SIA+ +++PEIVTP+N+
Sbjct: 351 ARTVISGDPNLDLDQVGVPKSIAKVLSYPEIVTPYNI 387
>gi|384491453|gb|EIE82649.1| RNA polymerase I [Rhizopus delemar RA 99-880]
Length = 651
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 192/376 (51%), Positives = 244/376 (64%), Gaps = 24/376 (6%)
Query: 29 MSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHFGHIDLA 86
MSV++ I+FPE E G +P++GGL+DPR G IDR+ +CQTC M ECPGHFGHIDLA
Sbjct: 1 MSVSK--IEFPELYEEGTQKPRVGGLLDPRMGTIDRNYKCQTCGEGMAECPGHFGHIDLA 58
Query: 87 KPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGK 146
KPVFH+GF+TK KIL CVCF+CSKL V S+P+ + + R R ++D+ K K
Sbjct: 59 KPVFHIGFLTKIKKILECVCFHCSKLKVDQSNPRFERARRISDRKVRLRA--VWDIAKTK 116
Query: 147 NICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHV--NEDSQ 204
CEGGDE D ++ E + +K HGGCG QP IR+ GL L A+++ ++
Sbjct: 117 MTCEGGDEEDGLEEKEEFNSG--KRKSNHGGCGYKQPLIRKDGLKLYAQFRSSPGDDSGN 174
Query: 205 EKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVN-----EDSQEKKI 256
E K LT VL K +IR GL EW + I
Sbjct: 175 EGKQQLTAAKVLQILKNIP------DQDIRDMGLSEEYARPEWMMITVLPVPPPQVRPSI 228
Query: 257 PLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
+ G DDLTHKL+DI+K N + R ES GA HV+ E ++LQFH+AT DND+ G
Sbjct: 229 QMDGTSKGEDDLTHKLSDILKANANVKRCESEGAPVHVVNEFEQLLQFHIATYMDNDIAG 288
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P+A+QKSG+PLK+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +DQVGVPRSI
Sbjct: 289 QPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLALDQVGVPRSI 348
Query: 377 AQNMTFPEIVTPFNMD 392
A+N+T+PEIVTP+N+D
Sbjct: 349 ARNLTYPEIVTPYNID 364
>gi|297798336|ref|XP_002867052.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata]
gi|297312888|gb|EFH43311.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata]
Length = 1839
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 179/399 (44%), Positives = 246/399 (61%), Gaps = 20/399 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A + V+ VQFGILSPDEIR+MSV ++ ET E G+PK+GGL D R G IDR +
Sbjct: 8 SPAEVSKVRVVQFGILSPDEIRQMSVIH--VEHSETTEKGKPKVGGLSDIRLGTIDRKVK 65
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+TC NM ECPGHFGH++LAKP++HVGF+ + I+RCVCF CSK+L +
Sbjct: 66 CETCMANMAECPGHFGHLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEVCRNLSRQA 125
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
+K K R + I D CK K CEGGD++ D ++ ++ + K+ GGCG QP +
Sbjct: 126 MKIKNPKNRLKK-ILDACKNKTKCEGGDDI----DDVQNQDTDEPVKKSRGGCGAQQPKL 180
Query: 186 RRSGLDLTAEWK----------HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGR--YQPNI 233
G+ + AE+K + E ++ K+ + + + K+ C + P
Sbjct: 181 TIEGMKMIAEYKIPRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDEDCQLLGFNPKF 240
Query: 234 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATH 293
R + E + + + DDLTH+LA II+ N L R E +GA H
Sbjct: 241 ARPDW-MILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAH 299
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
+I+E ++LQFH+AT DN++PG PRA QKSG+P+K+I +RLK KEGRIRGNLMGKRVDF
Sbjct: 300 IISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 359
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
SARTVITPDP + ID++GVP SIA N+T+PE VTP+N++
Sbjct: 360 SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIE 398
>gi|334187204|ref|NP_195305.2| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
gi|322510106|sp|P18616.3|RPB1_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|332661173|gb|AEE86573.1| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
Length = 1839
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 179/399 (44%), Positives = 246/399 (61%), Gaps = 21/399 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A + V+ VQFGILSPDEIR+MSV ++ ET E G+PK+GGL D R G IDR +
Sbjct: 8 SPAEVSKVRVVQFGILSPDEIRQMSVIH--VEHSETTEKGKPKVGGLSDTRLGTIDRKVK 65
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+TC NM ECPGHFG+++LAKP++HVGF+ + I+RCVCF CSK+L K +
Sbjct: 66 CETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHKFKQ-A 124
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
+K K R + I D CK K C+GGD++D + + D + K+ GGCG QP +
Sbjct: 125 MKIKNPKNRLKK-ILDACKNKTKCDGGDDIDDVQSHSTD----EPVKKSRGGCGAQQPKL 179
Query: 186 RRSGLDLTAEWK----------HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGR--YQPNI 233
G+ + AE+K + E ++ K+ + + + K+ C + P
Sbjct: 180 TIEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKF 239
Query: 234 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATH 293
R + E + + + DDLTH+LA II+ N L R E +GA H
Sbjct: 240 ARPDW-MILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAH 298
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
+I+E ++LQFH+AT DN++PG PRA QKSG+P+K+I +RLK KEGRIRGNLMGKRVDF
Sbjct: 299 IISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 358
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
SARTVITPDP + ID++GVP SIA N+T+PE VTP+N++
Sbjct: 359 SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIE 397
>gi|16494|emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 1860
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 182/399 (45%), Positives = 246/399 (61%), Gaps = 28/399 (7%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A + V+ VQFGILSPDEIR+MSV ++ ET E G+PK+GGL D R G IDR +
Sbjct: 8 SPAEVSKVRVVQFGILSPDEIRQMSVIH--VEHSETTEKGKPKVGGLSDTRLGTIDRKVK 65
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+TC NM ECPGHFG+++LAKP++HVGF+ + I+RCVCF CSK+L D
Sbjct: 66 CETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILA--------DEA 117
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
+K K R + I D CK K C+GGD++D + + D + K+ GGCG QP +
Sbjct: 118 MKIKNPKNRLKK-ILDACKNKTKCDGGDDIDDVQSHSTD----EPVKKSRGGCGAQQPKL 172
Query: 186 RRSGLDLTAEWKHVNEDSQ---------EKKIPLTGKGVL-LNKKQGHGGCGR--YQPNI 233
G+ + AE+K+ E++ E+K L VL + K+ C + P
Sbjct: 173 TIEGMKMIAEYKNSKEENDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKF 232
Query: 234 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATH 293
R + E + + + DDLTH+LA II+ N L R E +GA H
Sbjct: 233 ARPDW-MILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPRH 291
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
+I+ ++LQFH+AT DN++PG PRA QKSG+P+K+I +RLK KEGRIRGNLMGKRVDF
Sbjct: 292 IISRFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 351
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
SARTVITPDP + ID++GVP SIA N+T+PE VTP+N++
Sbjct: 352 SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIE 390
>gi|302794771|ref|XP_002979149.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
gi|300152917|gb|EFJ19557.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
Length = 1764
Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 189/425 (44%), Positives = 258/425 (60%), Gaps = 55/425 (12%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A L VK+VQFG++SPDEIR+MSV + I+ ET + G+PK GGL DPR G IDR ++
Sbjct: 8 SPAELARVKRVQFGLMSPDEIRQMSVCK--IESSETYDRGKPKSGGLSDPRLGTIDRQTK 65
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+TC G+M ECPGHFGH++LAKP+FH+GF+ + +LRCVC+ CS +L + R+ +
Sbjct: 66 CETCGGSMAECPGHFGHLELAKPMFHIGFLKTVLALLRCVCYNCSHIL---ALEVCRETL 122
Query: 126 L-------------------KTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPN 166
L K ++R + + CK K CEG + + DG +D
Sbjct: 123 LLCFIFGLVCWQNDHKFKLAKKAKNPKQRLKKVLECCKNKQKCEGNNN---DMDGEQDDQ 179
Query: 167 SLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE--DSQEKKIP--------LTGKGVL 216
+ +++GHGGCG QP I G+ + AE+K + D Q++ +P LT + VL
Sbjct: 180 --EGEQKGHGGCGAQQPKITIDGMKIIAEFKVPKKKGDDQDQYLPEPVERKQQLTAERVL 237
Query: 217 -LNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVN-----EDSQEKKIPLTGKGVLLDD 267
+ K+ C R GLD +W + + + DD
Sbjct: 238 GILKRISDEEC-------RILGLDPQFARPDWMILQVLPIPPPPVRPSVMMDSSARSEDD 290
Query: 268 LTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKP 327
LTH+LA II+ NN L R E +GA TH+I E ++LQFH+AT DND+PG PRA Q+SG+P
Sbjct: 291 LTHQLAMIIRHNNNLKRQEQNGAPTHIINEFTQLLQFHIATYFDNDLPGQPRATQRSGRP 350
Query: 328 LKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVT 387
+K+I RLK KEGRIRGNLMGKRVDFSARTVITPDPN+ ID++GVP SIA N+T+PE VT
Sbjct: 351 IKSICQRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVT 410
Query: 388 PFNMD 392
P+N++
Sbjct: 411 PYNLE 415
>gi|313225877|emb|CBY21020.1| unnamed protein product [Oikopleura dioica]
Length = 399
Score = 333 bits (855), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 184/399 (46%), Positives = 244/399 (61%), Gaps = 89/399 (22%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVT----EGGIKFPETMEGGRPKLGGLMDPRQGV 59
++S LR +K+VQFGIL PDEI+RMSVT GI +PE+ E G+PKLGG+MDPRQGV
Sbjct: 3 SESSVTLRKIKRVQFGILGPDEIKRMSVTVPPHSDGIMYPESTENGKPKLGGIMDPRQGV 62
Query: 60 IDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHP 119
DR SRCQTCAGNM +CPGHFGHI+LAKPVFHVGF K+++ILRC+CFYCSK+LV ++P
Sbjct: 63 SDRFSRCQTCAGNMNDCPGHFGHIELAKPVFHVGFFNKSLRILRCICFYCSKVLVDKNNP 122
Query: 120 KVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCG 179
K++ ++ +T G +++ + G+ D +NKK HGGC
Sbjct: 123 KMQSILARTAGTPKKK--------------DNGEPTD------------ENKKPSHGGC- 155
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD 239
+ +K+++++ +I + G C +P
Sbjct: 156 ------------VMEIFKNISDE----EIEILGM-----------DCKYARP-------- 180
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGV-LLDDLTHKLADIIKCNNELIRNESSGAATH 293
EW ++ + + G G+ DD+THK +DIIK N EL RNE+SGAA H
Sbjct: 181 ---EWMIISVLPVAPLCVRPSVVMGGSGLRCQDDVTHKYSDIIKVNTELRRNEASGAAAH 237
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
++ + + LQFHVAT+ DN +PGLPRAMQKSG+PLK+I RLK KEGR+RGNLMGKRVDF
Sbjct: 238 ILEQGVLELQFHVATMMDNTLPGLPRAMQKSGRPLKSISERLKAKEGRVRGNLMGKRVDF 297
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
SA +GVPRSIA N+T+PEIVTPFN+D
Sbjct: 298 SA--------------LGVPRSIASNLTYPEIVTPFNID 322
>gi|16505|emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana]
Length = 1841
Score = 333 bits (855), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 178/399 (44%), Positives = 245/399 (61%), Gaps = 20/399 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A + V+ VQFGILSPDEIR+MSV ++ ET E G+PK+GGL D R G IDR +
Sbjct: 8 SPAEVSKVRVVQFGILSPDEIRQMSVIH--VEHSETTEKGKPKVGGLSDTRLGTIDRKVK 65
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+TC NM ECPGHFG+++LAKP++HVGF+ + I+RCVCF CSK+L +
Sbjct: 66 CETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEVCRSLFRQA 125
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
+K K R + I D CK K C+GGD++D + + D + K+ GGCG QP +
Sbjct: 126 MKIKNPKNRLKK-ILDACKNKTKCDGGDDIDDVQSHSTD----EPVKKSRGGCGAQQPKL 180
Query: 186 RRSGLDLTAEWK----------HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGR--YQPNI 233
G+ + AE+K + E ++ K+ + + + K+ C + P
Sbjct: 181 TIEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKF 240
Query: 234 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATH 293
R + E + + + DDLTH+LA II+ N L R E +GA H
Sbjct: 241 ARPDW-MILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAH 299
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
+I+E ++LQFH+AT DN++PG PRA QKSG+P+K+I +RLK KEGRIRGNLMGKRVDF
Sbjct: 300 IISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 359
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
SARTVITPDP + ID++GVP SIA N+T+PE VTP+N++
Sbjct: 360 SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIE 398
>gi|4883421|emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana]
gi|7270532|emb|CAB81489.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana]
Length = 1840
Score = 333 bits (854), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 178/399 (44%), Positives = 245/399 (61%), Gaps = 20/399 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A + V+ VQFGILSPDEIR+MSV ++ ET E G+PK+GGL D R G IDR +
Sbjct: 8 SPAEVSKVRVVQFGILSPDEIRQMSVIH--VEHSETTEKGKPKVGGLSDTRLGTIDRKVK 65
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+TC NM ECPGHFG+++LAKP++HVGF+ + I+RCVCF CSK+L +
Sbjct: 66 CETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEVCRSLFRQA 125
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
+K K R + I D CK K C+GGD++D + + D + K+ GGCG QP +
Sbjct: 126 MKIKNPKNRLKK-ILDACKNKTKCDGGDDIDDVQSHSTD----EPVKKSRGGCGAQQPKL 180
Query: 186 RRSGLDLTAEWK----------HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGR--YQPNI 233
G+ + AE+K + E ++ K+ + + + K+ C + P
Sbjct: 181 TIEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKF 240
Query: 234 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATH 293
R + E + + + DDLTH+LA II+ N L R E +GA H
Sbjct: 241 ARPDW-MILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAH 299
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
+I+E ++LQFH+AT DN++PG PRA QKSG+P+K+I +RLK KEGRIRGNLMGKRVDF
Sbjct: 300 IISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 359
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
SARTVITPDP + ID++GVP SIA N+T+PE VTP+N++
Sbjct: 360 SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIE 398
>gi|149235017|ref|XP_001523387.1| DNA-directed RNA polymerase II largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
gi|146452796|gb|EDK47052.1| DNA-directed RNA polymerase II largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1745
Score = 333 bits (854), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 184/395 (46%), Positives = 248/395 (62%), Gaps = 32/395 (8%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APL+ +K+VQFG++SP+EIR +SV + I +PET + R K GGL DPR G IDR+
Sbjct: 8 SSAPLKSIKEVQFGLMSPEEIRAISVAK--IVYPETFDQATKRFKEGGLNDPRLGSIDRN 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC +M+ECPGHFGHI+L +PVFH+GF+ K K+L +CF+C KLL+ +P +
Sbjct: 66 YKCQTCGEDMSECPGHFGHIELTRPVFHIGFIAKIKKVLESICFHCGKLLLDEENPLMAQ 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ K + +R A ++ LCK K ICE + ++ K+ GGCG QP
Sbjct: 126 AI-KIRDPKKRFNA-VWGLCKSKMICETSE--------------IEGKR---GGCGHTQP 166
Query: 184 NIRRSGLDLTAEWK---HVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPN---IRRS 236
IRR GL L WK + ++ Q ++ LT +L + K C R N R
Sbjct: 167 TIRRDGLKLWGTWKSNKNFEDNDQPERRQLTPTEILQIFKHITSEDCYRLGFNEDYARPE 226
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ +T T +G DDLT KLAD+IK N + R E G+ HVI+
Sbjct: 227 WMLITVLPVPPPPVRPSIAFNDTARGE--DDLTFKLADVIKANMNVQRLEMDGSPQHVIS 284
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFHVAT DND+ G P+A+QK+G+P+K+I+ARLKGKEGR+RGNLMGKRVDFSAR
Sbjct: 285 EFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSAR 344
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
TVI+ DPNL +DQVGVP SIA+ +T+PEIVTP+N+
Sbjct: 345 TVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNI 379
>gi|453086034|gb|EMF14076.1| DNA-dependent RNA polymerase II largest subunit [Mycosphaerella
populorum SO2202]
Length = 1780
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 189/407 (46%), Positives = 250/407 (61%), Gaps = 30/407 (7%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG--GRPKLGGLMDPRQGVI 60
A S APL+ VK++QFG+ SP+EI+ MSV I++PETM+ RP+ GL DP+ G I
Sbjct: 4 FAHSDAPLKTVKEIQFGLFSPEEIKNMSVCH--IEYPETMDEQRNRPRERGLNDPKLGTI 61
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DRS C TC + ECPGHFGHI+LA PV+HVG++TK KIL VC C KLL +P
Sbjct: 62 DRSQMCATCGESQQECPGHFGHIELAVPVYHVGYITKIKKILESVCNNCGKLLEDERNPT 121
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+ +K + RR +A + LCK K C+ + D + +DP + K GHGGCG
Sbjct: 122 FA-LAIKLRDPKRRFEA-VTRLCKPKMDCQTDEPSDEDGQFGDDPK--KPKLAGHGGCGN 177
Query: 181 YQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRR 235
QP IR+ GL L WK ED+ +K P+T L + ++ R
Sbjct: 178 MQPTIRKDGLKLIGTWKMPKNEDTGEDNSPEKKPITPTDALRVFRNIS------DEDLYR 231
Query: 236 SGLDLT---AEWK-----HVNEDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIR 284
GL++ EW V + I + G + DDLT+KL+DII+ N+ + R
Sbjct: 232 LGLNVDYARPEWMILTVLPVPPPAVRPSISVDGTSQGMRSEDDLTYKLSDIIRANSNVRR 291
Query: 285 NESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRG 344
E G+ H+ E ++LQ+HVAT DND+ GLP+++QKSG+PLKAI+ARLK KEGR+RG
Sbjct: 292 AEQEGSPAHITEEFTQLLQYHVATYMDNDIAGLPKSIQKSGRPLKAIRARLKSKEGRLRG 351
Query: 345 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
NLMGKRVDFSARTVIT DPNL +DQVGVPRS A+ +TFPE VTP+N+
Sbjct: 352 NLMGKRVDFSARTVITGDPNLDLDQVGVPRSTARVLTFPERVTPYNI 398
>gi|171695074|ref|XP_001912461.1| hypothetical protein [Podospora anserina S mat+]
gi|170947779|emb|CAP59942.1| unnamed protein product [Podospora anserina S mat+]
Length = 1748
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 181/407 (44%), Positives = 256/407 (62%), Gaps = 27/407 (6%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ A S APLR ++++QFG+LSPDEI+ MSV I +PETM+ R P+ GGL DP G
Sbjct: 4 LIFAHSSAPLRTIQEIQFGLLSPDEIKAMSVAH--IVYPETMDETRTKPRDGGLNDPLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
+DR +C+TC NM+ECPGHFGHI+LA+PV+H GF+ +T K+L VC CSK+L S
Sbjct: 62 SVDRQFKCKTCTENMSECPGHFGHIELARPVYHPGFIKRTKKLLEIVCHNCSKVLADRSD 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINK--DGAEDPNSLQNKKQGHG 176
P + ++R ++ ++D+CK K +C D + K DG+ DPN+ GHG
Sbjct: 122 PAYAAAMKIRDPKTRFKR--VWDICKAKRVC---DNLAPQKPEDGSYDPNA-GPADGGHG 175
Query: 177 GCGRYQPNIRRSGLDLTAEWKHVNED---SQEKKIPLTGKGVLLNKKQGHGGCGRYQPNI 233
GCG QP +R+ L L A +H +++ ++EKK+ + + ++ NI
Sbjct: 176 GCGNTQPVVRQQALTLYAMVEHKDDEGVKTKEKKVLTPEMTLNIFRRMSEDEMVDIGLNI 235
Query: 234 RRSGLDLTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRN 285
++ EW + I + G G + DDLT+KL DII+ N + +
Sbjct: 236 SQA----RPEWMIITVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVRQA 291
Query: 286 ESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGN 345
S G+ H+I + +LQ+HVAT DND+ G P+A+QKSG+P+KAI+ARLKGKEGR+RGN
Sbjct: 292 ISEGSPQHIITDYENLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGN 351
Query: 346 LMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
LMGKRVDFSARTVIT D N+ +D+VGVPRSIA+ +TFPE VTP+N++
Sbjct: 352 LMGKRVDFSARTVITGDANISLDEVGVPRSIARTLTFPETVTPYNIE 398
>gi|406865480|gb|EKD18522.1| DNA-directed RNA polymerase 2 largest subunit [Marssonina brunnea
f. sp. 'multigermtubi' MB_m1]
Length = 1738
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 184/402 (45%), Positives = 250/402 (62%), Gaps = 18/402 (4%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ S APLR +++VQFG+LSP+EI+ MSV I +PETM+ R P+ GL DPR G
Sbjct: 4 LIFTHSDAPLRTIQEVQFGLLSPEEIKNMSVCH--ILYPETMDETRTKPRDQGLNDPRLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
IDR +C TC NM+ECPGHFGHI+LAKPV+H GF+ KT K+L VC C ++L+ S+
Sbjct: 62 SIDRQFKCATCDQNMSECPGHFGHIELAKPVYHPGFLKKTKKLLEMVCHNCGRVLLDRSN 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGC 178
P + V +RR I+ LCK K IC+ D DG+ DP L K+ HGGC
Sbjct: 122 PAYKAAV--NIRDPKRRFDTIWRLCKPKMICD-SDASQEGADGSVDPKDL--AKRAHGGC 176
Query: 179 GRYQPNIRRSGLDLTAEWK----HVNEDSQEKKIPLTGKGVLLNKKQGHGG----CGRYQ 230
G QP +R+ L+L WK NE +Q +K +T + L + G
Sbjct: 177 GNTQPEVRQVALELFGTWKVPKDEDNEGAQPEKRAITPEMALNVFRSISTSEIFDLGLSN 236
Query: 231 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LDDLTHKLADIIKCNNELIRNESSG 289
R + +T + T +G+ DDLT+KL DII+ N + + + G
Sbjct: 237 DYARPEWMIITVLPVPPPPVRPSISMDGTSQGMRGEDDLTYKLGDIIRANGNVRQAQQEG 296
Query: 290 AATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGK 349
+ H++++ K+LQ+HVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGK
Sbjct: 297 SPAHILSDFEKLLQYHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGK 356
Query: 350 RVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 357 RVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 398
>gi|357483939|ref|XP_003612256.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355513591|gb|AES95214.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 1864
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 186/416 (44%), Positives = 255/416 (61%), Gaps = 38/416 (9%)
Query: 6 SKAPLRCVKKVQFGILSPDEI------RRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGV 59
S A + V+ VQFGILSPDEI R+M+V + I+ ET E G+PK+GGL DPR G
Sbjct: 8 SPAEVAKVRMVQFGILSPDEIVIFSILRQMAVVQ--IEHGETTERGKPKIGGLSDPRLGT 65
Query: 60 IDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVS---- 115
IDR +C+TC +M ECPGHFG+++LAKP+FH+GF+ + I+RCVCF CSK+L
Sbjct: 66 IDRKMKCETCTASMAECPGHFGYLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEVLS 125
Query: 116 -PSHP-------KVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNS 167
P P K + + + R R+ I D CK K CEGGD++D+ + ++P
Sbjct: 126 RPFKPVLLINDHKFKQAMRIKNPKHRLRK--ILDACKNKTKCEGGDDIDLPEHDTKEP-- 181
Query: 168 LQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQ---------EKKIPLTGKGVL-L 217
K+ GGCG QP I G+ + AE+K + S E+K L+ + VL +
Sbjct: 182 ---LKKSRGGCGAQQPKITIEGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGV 238
Query: 218 NKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADII 276
K+ C N + + D L + + + + DDLTH+LA II
Sbjct: 239 LKRISDEDCQLLGLNPKYARPDWLILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMII 298
Query: 277 KCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLK 336
+ N L R E +G+ H+I+E ++LQFH+AT DN++PGLPRA Q+SG+P+K+I +RLK
Sbjct: 299 RHNENLKRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLK 358
Query: 337 GKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
KEGRIRGNLMGKRVDFSARTVITPDP + IDQ+GVP SIA N+T+PE VTP+N++
Sbjct: 359 AKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIE 414
>gi|452844541|gb|EME46475.1| hypothetical protein DOTSEDRAFT_70470 [Dothistroma septosporum
NZE10]
Length = 1773
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 192/403 (47%), Positives = 250/403 (62%), Gaps = 30/403 (7%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG--GRPKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG+ SP+EI+ MSV I++PETM+ RP+ GL DP+ G IDR+
Sbjct: 7 SLAPLKTVQEIQFGLFSPEEIKNMSVCH--IEYPETMDEQRNRPREKGLNDPKLGTIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRC TC ECPGHFGHI+LA PVFHVGF+TK KIL VC C KLL
Sbjct: 65 SRCGTCGEEQLECPGHFGHIELAIPVFHVGFITKIKKILESVCHNCGKLL-EDERSTAFA 123
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ LK + RR + I LCKGK C + + + EDP + K+ GHGGCG QP
Sbjct: 124 MALKLRDPKRRFEQ-ITRLCKGKTDCAADEPEKDDGNFGEDPK--KPKQAGHGGCGNVQP 180
Query: 184 NIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGL 238
IR+ L L WK +D+ +K P+T + + LN + + ++ R GL
Sbjct: 181 TIRKEQLKLIGTWKMAKNEETGDDAGIEKRPITPQ-MALNIFRNIS-----EEDLARLGL 234
Query: 239 DLT---AEWK-----HVNEDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNES 287
++ EW V + I + G + DDLT+KL+DII+ N+ + R E
Sbjct: 235 NVDYARPEWMVLTVLPVPPPAVRPSISVDGTSQGMRSEDDLTYKLSDIIRANSNVRRCEQ 294
Query: 288 SGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLM 347
G+ H++ E +LQ+HVAT DND+ GLPRA QK+G+PLKAI+ARLK KEGR+RGNLM
Sbjct: 295 EGSPQHILEEFTTLLQYHVATYMDNDIAGLPRAQQKTGRPLKAIRARLKSKEGRLRGNLM 354
Query: 348 GKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN 390
GKRVDFSARTVIT DPNL +DQVGVPRSIA+ +TFPE VTP+N
Sbjct: 355 GKRVDFSARTVITGDPNLDLDQVGVPRSIARVLTFPERVTPYN 397
>gi|302141712|emb|CBI18915.3| unnamed protein product [Vitis vinifera]
Length = 1565
Score = 330 bits (847), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 194/449 (43%), Positives = 253/449 (56%), Gaps = 64/449 (14%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
M S A + V+ VQFGILSPDEIR+MSV + I+ ET E G+PK GGL DPR G I
Sbjct: 3 MRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHSETTERGKPKPGGLSDPRLGTI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLV------ 114
DR +C+TC NM ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADELTEN 120
Query: 115 -------------------SPSHPKVRDVVLKTKGQSR---RRQAFIYDLCKGKNICEGG 152
S H K D K + R R I D CK K+ CEGG
Sbjct: 121 VKWISKSKFANMKSLKLGHSLLHCKSEDHKFKQAQKIRNPKNRLKKILDACKNKSKCEGG 180
Query: 153 DEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK---HVNEDSQ----- 204
DE++ +++P K+ GGCG QP + G+ + AE+K N+D +
Sbjct: 181 DEIETQALDSDEP-----VKKSRGGCGAQQPKLTIEGMKMIAEYKIQRKKNDDPEQLPEP 235
Query: 205 -EKKIPLTGKGVL---------------LNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 248
E+K L+ + VL LN K Q + +
Sbjct: 236 VERKQQLSAERVLNVLKRISDEDCILLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 295
Query: 249 EDSQEKKIPLTGKGV-----LLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
S+ L + L DDLTH+LA II+ N L R E +GA H+I+E ++LQ
Sbjct: 296 SRSEASLSVLVNDRLKLSMWLWDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQ 355
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
FHVAT DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP
Sbjct: 356 FHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 415
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+ ID++GVP SIA N+T+PE VTP+N++
Sbjct: 416 TINIDELGVPWSIALNLTYPETVTPYNIE 444
>gi|71019559|ref|XP_760010.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
gi|46099536|gb|EAK84769.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
Length = 1774
Score = 330 bits (846), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 186/446 (41%), Positives = 245/446 (54%), Gaps = 112/446 (25%)
Query: 2 AMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVI 60
+ A S AP+R V++VQFGILSP+EIR +SV + ++ PE E G+P++GGL DPR G +
Sbjct: 8 SFAHSTAPIRPVREVQFGILSPEEIRAISVCK--VEIPEIKDEAGKPRIGGLSDPRLGTL 65
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+ +CQTC ECPGHFGHIDLAKPVFH+G++ K KIL CVCF+C KL
Sbjct: 66 DRNYKCQTCGEGHQECPGHFGHIDLAKPVFHIGYLGKVKKILECVCFHCGKLKADTVTDP 125
Query: 121 VRDVVLK-TKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCG 179
V D ++K T+G +RR +++ C K ICE D D ++ G ++ N
Sbjct: 126 VFDQIVKATRGSKKRRFQRVWEYCSKKMICEADDPKDEDEMGFDEQN------------- 172
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD 239
K GHGGCGR QPNIRR GL
Sbjct: 173 ----------------------------------------KPGHGGCGRVQPNIRREGLK 192
Query: 240 LTAEWKH---VNEDSQEKKI--------PLTGKGVLL----------------------- 265
L +WK +ED +E I P + +L
Sbjct: 193 LFTQWKKGKGEDEDGEENAIAQAEKRPLPASEAHTILKKMSSHDIAVLGLSEENARPDWM 252
Query: 266 ---------------------DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQF 304
DDLT+KLAD+I+ N L + E G H++A+ ++LQF
Sbjct: 253 VLTVLPVPPPPVRPSVQDGGEDDLTYKLADVIRANATLKKMEQEGTPAHILADFEQLLQF 312
Query: 305 HVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
H AT DND+ G P+AMQ SG+P+K+I+ARLKGKEGR+RGNLMGKRV+FSARTVIT DP
Sbjct: 313 HCATFMDNDIAGQPQAMQSSGRPIKSIRARLKGKEGRLRGNLMGKRVNFSARTVITGDPL 372
Query: 365 LRIDQVGVPRSIAQNMTFPEIVTPFN 390
L +D+VGVP+SIA+N+T+PE VTP+N
Sbjct: 373 LELDEVGVPKSIARNLTYPERVTPYN 398
>gi|340924320|gb|EGS19223.1| hypothetical protein CTHT_0058480 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1756
Score = 330 bits (845), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 187/416 (44%), Positives = 258/416 (62%), Gaps = 42/416 (10%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ A S APLR +K++QFG+LSP+EI+ MSV I +PETM+ R P+ GGL DP G
Sbjct: 4 LIFAHSSAPLRTIKEIQFGLLSPEEIKAMSVCH--ILYPETMDETRTKPRDGGLNDPLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
+DR +C+TC NM+ECPGHFGHI+LA+PV+H GF+ +T K+L VC CS++L S
Sbjct: 62 SVDRQFKCKTCTENMSECPGHFGHIELARPVYHPGFIKRTKKLLEIVCHNCSRVLADRSD 121
Query: 119 P------KVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINK---DGAEDP--NS 167
P K+RD ++ K ++D+CK K CE DI K DG +P N+
Sbjct: 122 PQYAAAMKIRDPKIRFKR--------VWDICKSKRRCEN----DIPKQAEDGDYNPNGNA 169
Query: 168 LQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNED---SQEKKIPLTGKGVLLNKKQGHG 224
+ GHGGCG QP IR+ L L A ++H ++D ++EKKI + + ++
Sbjct: 170 QEAPVGGHGGCGNAQPVIRQQALTLWAHYEHRDDDGVKTKEKKIITPEMALNIFRRMRDE 229
Query: 225 GCGRYQPNIRRSGLDLTAEWKHVN-----EDSQEKKIPLTGKGVLL---DDLTHKLADII 276
NI ++ EW + I + G G L DDLT+KL DII
Sbjct: 230 EMIDIGLNISQA----RPEWMIITVLPVPPPPVRPSISMDGTGTGLRNEDDLTYKLGDII 285
Query: 277 KCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLK 336
+ N + + + G+ H+I + +LQ+HVAT DND+ G P+A+QKSG+P+KAI+ARLK
Sbjct: 286 RANGNVRQAIAEGSPQHIINDFENLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLK 345
Query: 337 GKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
GKEGR+RGNLMGKRVDFSARTVIT D N+ +D+VGVPRSIA+ +T+PE VTPFN++
Sbjct: 346 GKEGRLRGNLMGKRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPFNIE 401
>gi|346321728|gb|EGX91327.1| DNA-directed RNA polymerase II largest subunit [Cordyceps militaris
CM01]
Length = 1757
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 181/400 (45%), Positives = 249/400 (62%), Gaps = 23/400 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG+LSP+EI+ MSV I +PETME + P+ GGL DP G IDR
Sbjct: 9 SSAPLKTVEEIQFGMLSPEEIKNMSVAH--ILYPETMEENKTTPRDGGLNDPLLGSIDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C+TCA M+ECPGHFGHI+LAKPV+H GF+ K K+L VC CSK+L S P+
Sbjct: 67 FKCKTCAQPMSECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADESDPEFVA 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
V + R ++ I+ +CK K CE + D NKD P +GHGGCG QP
Sbjct: 127 AVRTRDSKVRFKR--IWAVCKKKRKCENEERQDKNKDEEFAPGVKNTVLEGHGGCGNMQP 184
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD--- 239
+R++ L L A ++ +E+ ++K + V ++ + HG R + ++ GL+
Sbjct: 185 QVRQAALQLKAAFEVNSEEGPKRK-----ETVNISAEMAHGILRRISERDLHNMGLNSDY 239
Query: 240 LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAA 291
EW + I + G G DDLT+KL DII+ N + + G+
Sbjct: 240 ARPEWMIITVLPVPPPPVRPSISMDGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSP 299
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRV
Sbjct: 300 QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 359
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 360 DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 399
>gi|358387637|gb|EHK25231.1| hypothetical protein TRIVIDRAFT_85034 [Trichoderma virens Gv29-8]
Length = 1757
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 179/405 (44%), Positives = 245/405 (60%), Gaps = 23/405 (5%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQG 58
+ S APL+ V+++QFG++SP+EI+ MSV I +PETME G +P+ GGL DP G
Sbjct: 4 LYFTHSSAPLKTVQEIQFGLMSPEEIKSMSVAH--ILYPETMEEGGTKPRDGGLNDPLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
IDR +C+TC M ECPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L S
Sbjct: 62 SIDRQFKCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADESD 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGC 178
P+ + + R ++ ++ +CK K CE D D NKD P + HGGC
Sbjct: 122 PEFVAAINTRDAKLRFKR--VWAVCKKKRRCENEDRTDKNKDEEFAPGMKPTLVESHGGC 179
Query: 179 GRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSG 237
G QP +R+ L L A ++ ED ++K + + + H R + ++R G
Sbjct: 180 GNVQPQVRQVALQLKAAFEVAQEDGPKRK-----ETAPITPEMAHSILRRISESDLRNMG 234
Query: 238 LD---LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNE 286
L+ EW + I + G G + DDLT+KL DII+ N + +
Sbjct: 235 LNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAI 294
Query: 287 SSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNL 346
G+ H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNL
Sbjct: 295 REGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNL 354
Query: 347 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
MGKRVDFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 355 MGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 399
>gi|242071129|ref|XP_002450841.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
gi|241936684|gb|EES09829.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
Length = 1874
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 183/399 (45%), Positives = 250/399 (62%), Gaps = 22/399 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A + V+ VQFGILSPDEIR+MSV + I++ ETME G+PK GGL DPR G +DR +
Sbjct: 8 SPAEVAKVELVQFGILSPDEIRQMSVAQ--IEYAETMEKGKPKAGGLSDPRMGTVDRKIK 65
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
CQTC M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+LV + K + +
Sbjct: 66 CQTCMSGMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDNTKFKQAL 125
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
++R ++ IYD CK K +C G+ D++ +D + N++ GGCG QP I
Sbjct: 126 KIRNPKNRLKR--IYDACKTKKVC--GEGDDLDVQQQQDTDEHVNRR---GGCGAQQPII 178
Query: 186 RRSGLDLTAEWKHV---NEDSQ------EKKIPLTGK---GVLLNKKQGHGGCGRYQPNI 233
G+ + E+K N+D + E K L+ + VL N P +
Sbjct: 179 TVDGVKMLVEFKAPKKKNDDQEQLSELVEPKQILSAERVLNVLKNISDKESLLLGLHPKL 238
Query: 234 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATH 293
R + + + + + DDLTH+LA II+ N L R E +GA H
Sbjct: 239 ARPDW-MILQVLPIPPPPVRPSVMMGTSSKSEDDLTHQLAMIIRHNENLRRQERNGAPAH 297
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
+I E ++LQFH+AT DN++PG PRA Q+SG+P+K+I +RLK KEGR+RGNLMGKRVDF
Sbjct: 298 IIEEFSQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRVRGNLMGKRVDF 357
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
SARTVITPDPN+ ID+VGVP SIA N+T+PE VTP+N++
Sbjct: 358 SARTVITPDPNINIDEVGVPWSIALNLTYPETVTPYNIE 396
>gi|321259651|ref|XP_003194546.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus gattii
WM276]
gi|317461017|gb|ADV22759.1| DNA-directed RNA polymerase II largest subunit, putative
[Cryptococcus gattii WM276]
Length = 1786
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 188/402 (46%), Positives = 249/402 (61%), Gaps = 24/402 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSS 64
S AP++ VK++QFGI+SP+EI+ SV + I+ E + E G+ K+GGLMDP+ G IDR+
Sbjct: 8 SSAPVKQVKEIQFGIMSPEEIKAFSVAK--IESTEVLDENGKQKVGGLMDPKMGTIDRNF 65
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
+CQTC M+ECPGHFGHI+LA+PVFH GF+ K KIL CVC+ C KL V P V +
Sbjct: 66 KCQTCLEGMSECPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDPMVANA 125
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDI--NKDGAEDPNSLQNKK---QGHGGCG 179
V + K Q R + I+ L K K ICE DE+D N D + LQ KK +GHGGCG
Sbjct: 126 VRRIKAQHRLKA--IWALAKDKKICE-PDELDEKDNGDATFEDEYLQEKKATMKGHGGCG 182
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQP-NIRRSGL 238
QP R+ GL L WK ++ E P ++ + + + P ++ GL
Sbjct: 183 HEQPVWRKKGLKLLGVWKPTDKGEDEATEPEERN---VSPGEVYNILKKITPEDLHIMGL 239
Query: 239 DLTA---EWK-----HVNEDSQEKKIPLTGKGVLL-DDLTHKLADIIKCNNELIRNESSG 289
+ +W V + I + G + DDLT+KL+ IIK N + R E+ G
Sbjct: 240 NADYARPDWMILTVLPVPPAAVRPSIAVDGGAMRSEDDLTYKLSQIIKFNGVVRRMEAEG 299
Query: 290 AATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGK 349
V+ E +LQ+HV T DND+ GLPR QK G+ +KAI+ARLKGKEGR+RGNLMGK
Sbjct: 300 VPPSVVNEQFDLLQYHVCTYMDNDIAGLPRDQQKGGRAIKAIRARLKGKEGRMRGNLMGK 359
Query: 350 RVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RVDFSARTVIT DPNL++DQVGVP+SIA +T+PE VTP+N+
Sbjct: 360 RVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNI 401
>gi|320166366|gb|EFW43265.1| polymerase II polypeptide A [Capsaspora owczarzaki ATCC 30864]
Length = 1792
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 187/421 (44%), Positives = 254/421 (60%), Gaps = 37/421 (8%)
Query: 2 AMADSKAPLRCVKKVQFGILSPDEI-------------RRMSVTEGGIKFPETMEGGRPK 48
A+A S AP+R +++VQFGILSPDEI ++ +++ I+FP+ ME G K
Sbjct: 3 ALAHSVAPVRDIERVQFGILSPDEILGFLMLPSTIVQNKQKAMSVAKIEFPDAMENGMQK 62
Query: 49 LGGLMDPRQGVIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFY 108
GGL DPR G ++R +CQTC G+M +CPGHFGHI+L KPVF+V +TK K L+ VC++
Sbjct: 63 RGGLSDPRMGTVERQFKCQTCTGSMGDCPGHFGHIELVKPVFNVTMMTKIQKTLKSVCYH 122
Query: 109 CSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSL 168
CS+LLVSP + R R+ + C GK C GG ++D A+ S+
Sbjct: 123 CSRLLVSPEDMAYKHAQRTNNMSERFRR--LSTACFGKTRCGGGTDVD-----ADMKPSI 175
Query: 169 QNKKQGHGGCGRYQPNIRRSGLDLTAEWKHV--NEDSQEKKIPLTGKGVLLNKKQGHGGC 226
+ GCG QP +R GL LT E++ +DS+ +G G L Q
Sbjct: 176 DLTAKARTGCGNVQPKYKRDGLSLTYEFRLTGAKKDSESTAGGGSGGGALPTGTQTLSPE 235
Query: 227 GRYQPNIRRSGLDLTAEWKHVNEDSQEKKI-------PLTGKGVL--------LDDLTHK 271
++ R S D A + + + I P+T + + +DDLTHK
Sbjct: 236 KAHEILKRISDEDCRALGFNPEQGRPDWMIITVLPVPPMTVRPSVVMDSVARGIDDLTHK 295
Query: 272 LADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAI 331
LADIIK N+ L + E G+ H++ E K+LQ+HVAT DN++PG+ A QKSG+PLK+I
Sbjct: 296 LADIIKANHNLRQQELRGSPAHIMEEYTKLLQYHVATYADNEIPGVATAQQKSGRPLKSI 355
Query: 332 KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
+ R+KGKEGRIRGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA N+TFPE+VTP+N+
Sbjct: 356 RQRMKGKEGRIRGNLMGKRVDFSARTVITADPNLSLDEVGVPRSIALNLTFPEMVTPYNI 415
Query: 392 D 392
D
Sbjct: 416 D 416
>gi|328849370|gb|EGF98552.1| hypothetical protein MELLADRAFT_50989 [Melampsora larici-populina
98AG31]
Length = 1786
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 181/410 (44%), Positives = 252/410 (61%), Gaps = 36/410 (8%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S AP R V+ +QFGI+SPDEI+ SV + I+ PET E G PK+GGL DPR G IDR+
Sbjct: 9 SSAPTRRVRTIQFGIMSPDEIKGFSVAK--IEHPETYEEGGVHPKVGGLSDPRMGTIDRN 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC +M+ CPGHF HI+LA+PV+HVGF+ + KIL CVC C KL + V
Sbjct: 67 MKCQTCGEDMSTCPGHFAHIELARPVYHVGFLNRVKKILECVCVQCGKLKSDLNTDPVLA 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+++ +RR ++ C+GKNICE + ++ E P + +GHGGCG QP
Sbjct: 127 QMVRRARDPKRRFVMVHKHCRGKNICEADANDEKPENPEEPPRPEDEQPKGHGGCGHAQP 186
Query: 184 NIRRSGLDLTAEWK-----------HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPN 232
IR+ GL + ++ H ++ + +P + +L + +
Sbjct: 187 QIRKEGLKMFLQYTRRKGEEDDEGGHSLAGTERRPLPASDALSILRRISDE--------D 238
Query: 233 IRRSGL---DLTAEWKHVN-----EDSQEKKIPL---TGKGVLLDDLTHKLADIIKCNNE 281
+R GL + EW + I + T +G DDLT+KLA++IK N
Sbjct: 239 LRILGLHAEEARPEWMVLTVLPIPPPPVRPSIAMDGGTSRGE--DDLTYKLAEVIKANQA 296
Query: 282 LIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGR 341
+ + ES GA HVI E +LQ+H+AT DND+PG P+A+QKSG+P+K++++RLKGKEGR
Sbjct: 297 VRKFESEGAPAHVITEFETLLQWHIATYMDNDLPGQPQALQKSGRPVKSLRSRLKGKEGR 356
Query: 342 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
+RGNLMGKRVDFSARTVIT DPNL++DQVGVP SIA+N+T+PE VTP+N+
Sbjct: 357 LRGNLMGKRVDFSARTVITGDPNLQLDQVGVPYSIARNLTYPERVTPYNI 406
>gi|440636420|gb|ELR06339.1| DNA-directed RNA polymerase II subunit A [Geomyces destructans
20631-21]
Length = 1728
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 181/402 (45%), Positives = 249/402 (61%), Gaps = 17/402 (4%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ A S APLR ++++QFG+LSP+EI+ MSV I +PETM+ G+ P+ GL DPR G
Sbjct: 4 LHFAHSDAPLRTIQEIQFGLLSPEEIKNMSVAH--ILYPETMDEGKMKPRDQGLNDPRLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
IDR +C TC M ECPGHFGHI+LAKPV+H GF+ K K+L C C K+L+ S+
Sbjct: 62 SIDRGFKCATCDAGMAECPGHFGHIELAKPVYHPGFLKKIKKLLEIACHNCGKILLDRSN 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGC 178
P+ + V + +RR I+ LCK K IC+ +D + + A DP + K+ HGGC
Sbjct: 122 PQFKAAV--SMRDPKRRFEAIWRLCKPKMICDADISVD-DDEFAADPKAAA-KRPSHGGC 177
Query: 179 GRYQPNIRRSGLDLTAEWK----HVNEDSQEKKIPLTGKGVL----LNKKQGHGGCGRYQ 230
G QP +R++ L L WK NE+ Q +K +T + L G
Sbjct: 178 GNTQPEVRQTALQLWGTWKVPKDEDNENGQPEKKLITPEMALQVFRTISTDDIYDLGLNS 237
Query: 231 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LDDLTHKLADIIKCNNELIRNESSG 289
R + +T + TG+G+ DDLT+KLA+II+ N + + +S G
Sbjct: 238 DYARPEWMIITVLPVPPPPVRPSISMDGTGQGMRGEDDLTYKLAEIIRANGNVRQAQSEG 297
Query: 290 AATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGK 349
+ HV E +LQ+HVAT DND+ G P+++QKSG+P+K+I+ARLKGKEGR+R NLMGK
Sbjct: 298 SPAHVALEFESLLQYHVATYMDNDIAGQPQSLQKSGRPVKSIRARLKGKEGRLRSNLMGK 357
Query: 350 RVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 358 RVDFSARTVITGDPNLELDEVGVPRSIARILTYPETVTPYNI 399
>gi|385302705|gb|EIF46824.1| rna polymerase ii largest subunit, partial [Dekkera bruxellensis
AWRI1499]
Length = 1699
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 247/402 (61%), Gaps = 29/402 (7%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S APLR V+++QFG+LSP+EIR +SV + +++PE M+ +P++GGL DPR G IDR+
Sbjct: 7 SSAPLRTVQEIQFGLLSPEEIRAISVAK--VEYPEIMDPVTMKPRMGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC +M ECPGHFGHI+LAKPVFH+GF+ K K+ CVC C KLL+
Sbjct: 65 FKCQTCGEDMKECPGHFGHIELAKPVFHIGFMPKIKKLCECVCMNCGKLLLDEHTNPHFA 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+K + +R QA +++LCK K +CE D + ++ E + GGCG QP
Sbjct: 125 AAIKIRDPKKRFQA-VWNLCKTKMVCEV-DPGEEGEEEEEGNGQXASSHFHRGGCGSIQP 182
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHG----GCGRYQPNIRRSGLD 239
IR+ GL L W+ + D ++I ++Q H G R+ L
Sbjct: 183 TIRKDGLKLWGTWRRASVDDDTEQI---------ERRQVHAEEVLGVFRHISAADCEKLG 233
Query: 240 LTAEWKH----------VNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSG 289
+ EW V + T DDLT+KLADI+K N + + + G
Sbjct: 234 FSNEWARPEWMILTVLPVPPPPVRPSVAFTDSKRSEDDLTYKLADILKANINVQKFQMDG 293
Query: 290 AATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGK 349
+ HVI E +LQ+HVAT DND+ G P+A+QKSG+P+K+I+ARL+GKEGR+RGNLMGK
Sbjct: 294 SPQHVINEFEALLQYHVATYMDNDIAGQPQALQKSGRPIKSIRARLRGKEGRLRGNLMGK 353
Query: 350 RVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RVDFSAR+VI+ DPN+ +DQVGVPR++AQ +T+PE+VTP+N+
Sbjct: 354 RVDFSARSVISGDPNIELDQVGVPRTVAQTLTYPEVVTPYNI 395
>gi|340517293|gb|EGR47538.1| predicted protein [Trichoderma reesei QM6a]
Length = 1755
Score = 327 bits (839), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 179/405 (44%), Positives = 246/405 (60%), Gaps = 23/405 (5%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQG 58
+ S APL+ V+++QFG++SP+EI+ MSV I +PETME G +P+ GGL DP G
Sbjct: 4 LYFTHSSAPLKTVQEIQFGLMSPEEIKSMSVAH--ILYPETMEEGGTKPRDGGLNDPLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
IDR +C+TC M ECPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L S
Sbjct: 62 SIDRQFKCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADESD 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGC 178
P+ + + R ++ ++ +CK K CE D + NKD P + HGGC
Sbjct: 122 PEFVAAINTRDAKLRFKR--VWAVCKKKRRCENDDRSEKNKDEEFAPGMKPAVVESHGGC 179
Query: 179 GRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSG 237
G QP +R+ L L A ++ V ED ++K + + + H R + ++R G
Sbjct: 180 GNVQPQVRQVALQLKAAFEVVQEDGPKRK-----ETAPITPEMAHSILRRISEKDLRNMG 234
Query: 238 LD---LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNE 286
L+ EW + I + G G + DDLT+KL DII+ N + +
Sbjct: 235 LNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAI 294
Query: 287 SSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNL 346
G+ H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNL
Sbjct: 295 REGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNL 354
Query: 347 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
MGKRVDFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 355 MGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 399
>gi|392574154|gb|EIW67291.1| hypothetical protein TREMEDRAFT_40446 [Tremella mesenterica DSM
1558]
Length = 1808
Score = 327 bits (839), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 187/407 (45%), Positives = 245/407 (60%), Gaps = 33/407 (8%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSS 64
S AP R VK++QFG++SP+EI+ SV + I+ PE M E R K+GGLMDPR G IDR+
Sbjct: 8 SSAPTRQVKEIQFGVMSPEEIKAFSVAK--IEHPEVMDENNRQKVGGLMDPRMGTIDRNF 65
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
+CQTC M ECPGHFGHI+LA+PVFH GF+ K KIL C+CF C KL V P V ++
Sbjct: 66 KCQTCLEGMAECPGHFGHIELARPVFHGGFMVKVKKILECICFSCGKLRVDVRDPMVANI 125
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKK----QGHGGCGR 180
V + K Q R + I+ + + CE + D N D + K+ +GHGGCG
Sbjct: 126 VRRVKPQHRLKA--IWAIASKRTSCETDERDDENGDATNEAEFQAEKELGVPKGHGGCGA 183
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV-------LLNKKQGHGGCGRYQPNI 233
QP R+ L L A+ K D E L + V +L K ++
Sbjct: 184 DQPLWRKEALKLMAKSKPSTTDKDESGSELEIRSVSPGEIYNVLRKIPAE--------DL 235
Query: 234 RRSGLDLT---AEW-----KHVNEDSQEKKIPLTGKGVLL-DDLTHKLADIIKCNNELIR 284
GL++ EW V + I + G + DDLT+KLA I+K + + R
Sbjct: 236 HVMGLNIDYARPEWMILTVMPVPPAAVRPSISIDGGAMRSEDDLTYKLAQILKTSATVRR 295
Query: 285 NESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRG 344
E+ G V+ E +LQFHVAT DN++ GLP+ MQKSG+P+KAI+ARLKGKEGR+RG
Sbjct: 296 LEAEGVPPSVVDEQFDLLQFHVATYMDNEIAGLPQDMQKSGRPIKAIRARLKGKEGRMRG 355
Query: 345 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
NLMGKRVDFSARTVIT DPNL++DQVGVP+SIA +T+PE VTP+N+
Sbjct: 356 NLMGKRVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNI 402
>gi|405120884|gb|AFR95654.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus
neoformans var. grubii H99]
Length = 1786
Score = 327 bits (839), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 187/402 (46%), Positives = 249/402 (61%), Gaps = 24/402 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSS 64
S AP++ VK++QFGI+SP+EI+ SV + I+ E + E G+ K+GGLMDP+ G IDR+
Sbjct: 8 SSAPVKQVKEIQFGIMSPEEIKAFSVAK--IESTEVLDENGKQKVGGLMDPKMGTIDRNF 65
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
+CQTC M+ECPGHFGHI+LA+PVFH GF+ K KIL CVC+ C KL V P V +
Sbjct: 66 KCQTCLEGMSECPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDPMVANA 125
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDI--NKDGAEDPNSLQNKK---QGHGGCG 179
V + K Q R + I+ L K K ICE DE+D N D + LQ +K +GHGGCG
Sbjct: 126 VRRIKAQHRLKA--IWALAKDKKICE-PDELDEKDNGDATFEDEYLQEQKAALKGHGGCG 182
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQP-NIRRSGL 238
QP R+ GL L WK ++ E P ++ + + + P ++ GL
Sbjct: 183 HEQPVWRKKGLKLMGVWKPTDKGEDEAAEPEERN---VSPGEVYNILKKITPEDLHIMGL 239
Query: 239 DLTA---EWK-----HVNEDSQEKKIPLTGKGVLL-DDLTHKLADIIKCNNELIRNESSG 289
+ +W V + I + G + DDLT+KL+ IIK N + R E+ G
Sbjct: 240 NADYARPDWMILTVLPVPPAAVRPSIAVDGGAMRSEDDLTYKLSQIIKFNGVVRRMEAEG 299
Query: 290 AATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGK 349
V+ E +LQ+HV T DND+ GLPR QK G+ +KAI+ARLKGKEGR+RGNLMGK
Sbjct: 300 VPPSVVNEQFDLLQYHVCTYMDNDIAGLPRDQQKGGRAIKAIRARLKGKEGRMRGNLMGK 359
Query: 350 RVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RVDFSARTVIT DPNL++DQVGVP+SIA +T+PE VTP+N+
Sbjct: 360 RVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNI 401
>gi|54291834|gb|AAV32202.1| putative RNA polymerase II [Oryza sativa Japonica Group]
Length = 1741
Score = 327 bits (838), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 181/393 (46%), Positives = 239/393 (60%), Gaps = 63/393 (16%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A + V+ VQFG+LSPDEIR+MSV I+ ETME G+PK GGL DPR G IDR +
Sbjct: 9 SPAEVAKVEAVQFGVLSPDEIRQMSVVH--IEHAETMEKGKPKPGGLSDPRMGTIDRKIK 66
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+TC M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L K + +
Sbjct: 67 CETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDIKFKQAL 126
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
+++ ++ IYD CK N+K GG
Sbjct: 127 KIRNPKNKLKR--IYDACK-------------------------NRKICAGGD------- 152
Query: 186 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK 245
N D QE++ G + K+ GGCG QPNI G+ + AE+K
Sbjct: 153 --------------NLDVQEQQ----GTDDPVKKR---GGCGAQQPNITVDGMKMVAEYK 191
Query: 246 HV---NEDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENI 299
N+D ++ P+ K +L DDLTH+LA II+ N L R E +GA H+I E
Sbjct: 192 APKKKNDDQEQLPEPVDRKQILSAERDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFA 251
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
++LQFH+AT DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVI
Sbjct: 252 QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 311
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TPDPN+ ID++GVP SIA N+T+PE VTP+N++
Sbjct: 312 TPDPNINIDELGVPWSIALNLTYPETVTPYNIE 344
>gi|29539342|dbj|BAC67672.1| DNA-directed RNA polymerase II largest subunit [Cyanidioschyzon
merolae]
gi|449019055|dbj|BAM82457.1| RNA polymerase II largest subunit [Cyanidioschyzon merolae strain
10D]
Length = 1819
Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats.
Identities = 182/409 (44%), Positives = 245/409 (59%), Gaps = 44/409 (10%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A L+ V VQFG+LSPDE+RR+SV +++ E G PK GG++DPR G IDR+
Sbjct: 9 SSAELKAVGAVQFGLLSPDELRRLSVVR--VEYDVAFERGVPKAGGVLDPRLGAIDRNFP 66
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C TC G+ +CPGHFGHI+L KPVF+V ++ +K LRCVC+YCS+LLV S ++
Sbjct: 67 CATCEGSSIDCPGHFGHIELVKPVFNVLMLSTVLKTLRCVCYYCSRLLVDGSDSRMLRAA 126
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHG----GCGRY 181
+ K +R QA ++ LC G +C GG D +++ P ++ ++ G GCG
Sbjct: 127 -RIKDPVKRFQA-VFQLCNGTRVCGGG--ADSSEEQLMLPAAVLEARERIGKPREGCGNL 182
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
QP++ R GL + AE+ + E+K L + V + +IR L+L
Sbjct: 183 QPHVTRDGLRILAEFPDAEAFAAERKQELAAERV-----------QQIFRHIRDEDLELL 231
Query: 242 A--------EW----------KHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELI 283
EW HV Q + +G DDLT KL DIIK NN L
Sbjct: 232 GFHPRFSRPEWMVLSVLPVPPPHVRPSIQMDAV---SRGE--DDLTFKLGDIIKANNALQ 286
Query: 284 RNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIR 343
R E+ GA HVI E +LQFHVAT +ND+PG+PRA +SG+PLK+I RLKGKEGR+R
Sbjct: 287 RLEAEGAPAHVIREQYVLLQFHVATFMNNDLPGMPRATLRSGRPLKSIAQRLKGKEGRVR 346
Query: 344 GNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
NLMGKRV+FSARTVIT DP L +D+VGVPRS+A +T+PE+VTP+N+D
Sbjct: 347 NNLMGKRVNFSARTVITADPQLALDEVGVPRSVAMTLTYPEVVTPYNID 395
>gi|398398966|ref|XP_003852940.1| DNA-directed RNA polymerase II subunit RPB1 [Zymoseptoria tritici
IPO323]
gi|339472822|gb|EGP87916.1| hypothetical protein MYCGRDRAFT_99873 [Zymoseptoria tritici IPO323]
Length = 1773
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 196/408 (48%), Positives = 250/408 (61%), Gaps = 32/408 (7%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG--GRPKLGGLMDPRQGVI 60
A S+APLR V+++QFG+ SP+EI+ MSV I++PETM+ RP+ GL DP+ G I
Sbjct: 4 FAHSQAPLRTVQEIQFGLFSPEEIKNMSVCH--IEYPETMDEQRNRPREKGLNDPKLGTI 61
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR++ C TC + ECPGHFGHI+LA PVFHVGF+TK KIL VC C KLL +P+
Sbjct: 62 DRNTMCATCGESQQECPGHFGHIELAAPVFHVGFITKIKKILESVCNNCGKLLEDERNPQ 121
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
V K + RR + I LCK K C + D N EDP + K GHGGCG
Sbjct: 122 FAQAV-KIRDPKRRFEQ-IAKLCKSKMDCAMDEPADANDGFGEDPK--KPKIAGHGGCGN 177
Query: 181 YQPNIRRSGLDLTAEWKHV-----NEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIR 234
QP IR+ L LTA K NE+ +K +T + L L KK + ++
Sbjct: 178 VQPTIRKVQLTLTASTKVAKSEDGNEEGGVEKKTITPQVALDLFKK-------LREEDLH 230
Query: 235 RSGLDLT---AEWK-----HVNEDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELI 283
R GL++ EW V + I + G + DDLT+KL+DII+ N+ +
Sbjct: 231 RLGLNVDYARPEWMIMTVLPVPPPAVRPSISVDGTSQGMRSEDDLTYKLSDIIRANSNVR 290
Query: 284 RNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIR 343
R E G HV E +LQ+HVAT DND+ GLPR++QKSG+PLKAI+ARLK KEGR+R
Sbjct: 291 RCEQEGLPAHVREEFFGLLQYHVATYMDNDIAGLPRSIQKSGRPLKAIRARLKSKEGRLR 350
Query: 344 GNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
GNLMGKRVDFSARTVIT DPNL +DQVGVPRS A+ +TFPE VT +N+
Sbjct: 351 GNLMGKRVDFSARTVITGDPNLDLDQVGVPRSTARVLTFPERVTVYNI 398
>gi|400603032|gb|EJP70630.1| RNA polymerase Rpb1 [Beauveria bassiana ARSEF 2860]
Length = 1759
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 178/400 (44%), Positives = 249/400 (62%), Gaps = 23/400 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG+LSP+EI+ MSV I +PETME + P+ GGL DP G IDR
Sbjct: 9 SSAPLKTVEEIQFGMLSPEEIKNMSVAH--ILYPETMEENKTTPRDGGLNDPLLGSIDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C+TC+ M+ECPGHFGHI+LAKPV+H GF+ K K+L VC CSK+L S P+
Sbjct: 67 FKCKTCSQPMSECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADESDPEFVT 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + R ++ ++ +CK K CE + D NKD P +GHGGCG QP
Sbjct: 127 AIHTRDPKLRFKR--VWAVCKKKRKCENEERQDKNKDEEFAPGVKNVVLEGHGGCGNMQP 184
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD--- 239
+R++ L L A ++ +E+ ++K + V ++ + HG R + ++ GL+
Sbjct: 185 QVRQAALQLKAAFEVTSEEGPKRK-----ETVNISAEMAHGILRRISERDLHNIGLNSDY 239
Query: 240 LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAA 291
EW + I + G G DDLT+KL DII+ N + + G+
Sbjct: 240 ARPEWMIITVLPVPPPPVRPSISMDGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSP 299
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRV
Sbjct: 300 QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 359
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 360 DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 399
>gi|254571371|ref|XP_002492795.1| RNA polymerase II largest subunit B220 [Komagataella pastoris
GS115]
gi|238032593|emb|CAY70616.1| RNA polymerase II largest subunit B220 [Komagataella pastoris
GS115]
gi|328353197|emb|CCA39595.1| DNA-directed RNA polymerase II subunit A [Komagataella pastoris CBS
7435]
Length = 1743
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 182/397 (45%), Positives = 247/397 (62%), Gaps = 28/397 (7%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+LSP+EIR +SV + I++PE M+ R P+ GGL DP+ G IDR+
Sbjct: 7 SSAPLRSVKEVQFGLLSPEEIRAISVVK--IEYPEIMDESRQRPREGGLNDPKLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M ECPGHFGH++LAKPVFH+GF+ K K+ C+C C KLL+ ++P +
Sbjct: 65 FKCQTCGEGMAECPGHFGHMELAKPVFHIGFIPKIKKVCECICMNCGKLLLDETNPTMAQ 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + + +R A ++ LCK K +CE D D S Q K GGCG QP
Sbjct: 125 AI-RIRDPKKRFNA-VWQLCKTKMVCEA--------DAPVDEYSEQ-KVVSRGGCGNTQP 173
Query: 184 NIRRSGLDLTAEWK---HVNEDSQ-EKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD 239
+R+ G+ L WK + D+Q E+K+ G+ + + K C R N +
Sbjct: 174 VVRKDGMKLWGTWKKSGFSDRDAQPERKLLTPGEILNVFKHISPEDCFRLGFNEDYA--- 230
Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW + I + DDLTHKL+DI+K N + + E G+ H+
Sbjct: 231 -RPEWMIITVLPVPPPQVRPSIAMDETTQGQDDLTHKLSDILKANINVQKLEMDGSPQHI 289
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I E ++LQFHVAT DND+ G P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFS
Sbjct: 290 INEVEQLLQFHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFS 349
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
ARTVI+ DPNL +DQVGVP SIA+ +++PE VT +N+
Sbjct: 350 ARTVISGDPNLELDQVGVPISIAKTLSYPETVTQYNI 386
>gi|407925500|gb|EKG18511.1| RNA polymerase II heptapeptide repeat eukaryotic [Macrophomina
phaseolina MS6]
Length = 1756
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 188/405 (46%), Positives = 247/405 (60%), Gaps = 23/405 (5%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQG 58
+ A S APL+ ++++QFG+L P EI+ MSV I +PETM+ RP+ GGL DP+ G
Sbjct: 4 LHFAASSAPLKSIQEIQFGLLDPAEIQEMSVAH--IIYPETMDEAKQRPREGGLNDPKLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
IDR+ C TC NM ECPGHFGHI+L PVFHVGF+ K K+L CVC C K+L S
Sbjct: 62 SIDRAYSCATCGENMQECPGHFGHIELHTPVFHVGFINKIKKLLECVCHNCGKILGDESE 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQ--GHG 176
+ +D L+ + +R +A I+ +CK K +C+ D + GA +NKK HG
Sbjct: 122 HQFKD-ALRLRDPKKRFEA-IWKVCKPKAVCQMDQPSDDFEGGAP-----KNKKPQIQHG 174
Query: 177 GCGRYQPNIRRSGLDLTAEWK-HVNEDSQEKKIP----LTGKGVL----LNKKQGHGGCG 227
GCG QP +R+ GL L WK ED +E + P + + VL L + G
Sbjct: 175 GCGNRQPELRKDGLKLVGTWKPQKGEDEEEARQPEKRVIKPQDVLNIFKLITDESLVTLG 234
Query: 228 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LDDLTHKLADIIKCNNELIRNE 286
R + LT + TG+G+ DDLT+KLADII+ N + R
Sbjct: 235 LNVNFARPEWMILTMLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLADIIRANASIKRCH 294
Query: 287 SSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNL 346
+ GAA HVI + +LQ+HVAT DND+ G P+A QKSG+ LK I+ RLKGK+GR+RGNL
Sbjct: 295 TEGAAQHVIDDFEVLLQWHVATYMDNDLAGQPQAQQKSGRALKTIRGRLKGKDGRLRGNL 354
Query: 347 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
MGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTPFN+
Sbjct: 355 MGKRVDFSARTVITGDPNLDLDEVGVPRSIARTLTYPETVTPFNI 399
>gi|343424938|emb|CBQ68476.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Sporisorium reilianum SRZ2]
Length = 1785
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 183/446 (41%), Positives = 244/446 (54%), Gaps = 112/446 (25%)
Query: 2 AMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVI 60
+ A S AP+R V++VQFGILSP+EIR +SV + ++ PE E G+P++GGL DPR G +
Sbjct: 8 SFAHSTAPIRPVREVQFGILSPEEIRAISVCK--VEVPEIKDEAGKPRIGGLSDPRLGTL 65
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
DR+ +CQTC ECPGHFGHIDLAKPVFH+G++ K KIL CVCF+C KL
Sbjct: 66 DRNYKCQTCGEGHQECPGHFGHIDLAKPVFHIGYLGKVKKILECVCFHCGKLKADVVTDP 125
Query: 121 VRDVVLK-TKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCG 179
V D ++K T+G +RR +++ C K +CE + + ++ G E+
Sbjct: 126 VFDQIVKATRGSRKRRFQRVWEYCSKKMVCEADEPKEDDEMGFEE--------------- 170
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD 239
K GHGGCGR QPNIRR GL
Sbjct: 171 --------------------------------------QAKPGHGGCGRIQPNIRREGLK 192
Query: 240 LTAEWKH---VNEDSQEKKI--------PLTGKGVLL----------------------- 265
L +WK +ED +E I P + +L
Sbjct: 193 LFTQWKKGKGEDEDGEENAIAQAEKRPLPASEAHTILKKMSSEDIAVLGLSEENARPDWM 252
Query: 266 ---------------------DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQF 304
DDLT+KLAD+I+ N L + E G H++A+ ++LQF
Sbjct: 253 VLTVLPVPPPPVRPSVQDGGEDDLTYKLADVIRANATLKKMEQEGTPAHILADFEQLLQF 312
Query: 305 HVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
H AT DND+ G P+AMQ SG+P+K+I+ARLKGKEGR+RGNLMGKRV+FSARTVIT DP
Sbjct: 313 HCATFMDNDIAGQPQAMQSSGRPIKSIRARLKGKEGRLRGNLMGKRVNFSARTVITGDPL 372
Query: 365 LRIDQVGVPRSIAQNMTFPEIVTPFN 390
L +D+VGVP+SIA+N+T+PE VTP+N
Sbjct: 373 LELDEVGVPKSIARNLTYPERVTPYN 398
>gi|358390960|gb|EHK40365.1| hypothetical protein TRIATDRAFT_89498 [Trichoderma atroviride IMI
206040]
Length = 1756
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 179/405 (44%), Positives = 244/405 (60%), Gaps = 23/405 (5%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQG 58
+ S APL+ V+++QFG+LSP+EI+ MSV I +PETME G +P+ GGL DP G
Sbjct: 4 LYFTHSSAPLKTVQEIQFGLLSPEEIKSMSVAH--ILYPETMEEGGTKPRDGGLNDPLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
IDR +C+TC M ECPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L S
Sbjct: 62 SIDRQFKCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADESD 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGC 178
P+ + + R ++ ++ +CK K CE D D NKD P + HGGC
Sbjct: 122 PEFVAAINTRDAKLRFKR--VWAVCKKKRRCENEDRTDKNKDEEFAPGIKPALVESHGGC 179
Query: 179 GRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSG 237
G QP +R+ L L A ++ ED ++K + + + H R + ++ G
Sbjct: 180 GNVQPQVRQVALQLKAAFEVAQEDGPKRK-----ETAPITPEMAHSILRRISERDLVNMG 234
Query: 238 LD---LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNE 286
L+ EW + I + G G + DDLT+KL DII+ N + +
Sbjct: 235 LNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAI 294
Query: 287 SSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNL 346
G+ H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNL
Sbjct: 295 REGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNL 354
Query: 347 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
MGKRVDFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 355 MGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 399
>gi|58267574|ref|XP_570943.1| DNA-directed RNA polymerase ii largest subunit [Cryptococcus
neoformans var. neoformans JEC21]
gi|134112243|ref|XP_775097.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257749|gb|EAL20450.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227177|gb|AAW43636.1| DNA-directed RNA polymerase ii largest subunit, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1786
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 186/402 (46%), Positives = 248/402 (61%), Gaps = 24/402 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSS 64
S AP++ VK++QFGI+SP+EI+ SV + I+ E + E G+ K+GGLMDP+ G IDR+
Sbjct: 8 SSAPVKQVKEIQFGIMSPEEIKAFSVAK--IESTEVLDENGKQKVGGLMDPKMGTIDRNF 65
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
+CQTC M+ECPGHFGHI+LA+PVFH GF+ K KIL CVC+ C KL V P V +
Sbjct: 66 KCQTCLEGMSECPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDPMVANA 125
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDI--NKDGAEDPNSLQNKK---QGHGGCG 179
V + K Q R + I+ L K K CE DE+D N D + LQ +K +GHGGCG
Sbjct: 126 VRRIKAQHRLKA--IWALAKDKKHCE-PDELDEKDNGDATFEDEYLQEQKAAMKGHGGCG 182
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQP-NIRRSGL 238
QP R+ GL L WK ++ E P ++ + + + P ++ GL
Sbjct: 183 HEQPVWRKKGLKLMGVWKPTDKGEDEAAEPEERN---ISPGEVYNILKKITPEDLHIMGL 239
Query: 239 DLTA---EWK-----HVNEDSQEKKIPLTGKGVLL-DDLTHKLADIIKCNNELIRNESSG 289
+ +W V + I + G + DDLT+KL+ IIK N + R E+ G
Sbjct: 240 NADYARPDWMILTVLPVPPAAVRPSIAVDGGAMRSEDDLTYKLSQIIKFNGVVRRMEAEG 299
Query: 290 AATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGK 349
V+ E +LQ+HV T DND+ GLPR QK G+ +KAI+ARLKGKEGR+RGNLMGK
Sbjct: 300 VPPSVVNEQFDLLQYHVCTYMDNDIAGLPRDQQKGGRAIKAIRARLKGKEGRMRGNLMGK 359
Query: 350 RVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RVDFSARTVIT DPNL++DQVGVP+SIA +T+PE VTP+N+
Sbjct: 360 RVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNI 401
>gi|361124608|gb|EHK96688.1| putative DNA-directed RNA polymerase II subunit rpb1 [Glarea
lozoyensis 74030]
Length = 1727
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 181/399 (45%), Positives = 245/399 (61%), Gaps = 22/399 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ ++++QFG+LSP+EI+ MSV I +PETM+ R P+ GL DPR G IDR
Sbjct: 9 SDAPLKTIQEIQFGLLSPEEIKNMSVVH--ILYPETMDESRMKPRDQGLNDPRLGSIDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C TC M+ECPGHFGHI+LAKPVFH GF+ K KIL VC C K+L+ S+P +
Sbjct: 67 FKCGTCDQQMSECPGHFGHIELAKPVFHPGFIKKIKKILEMVCHNCGKILLDRSNPAYKA 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGG-DEMDINKDGAEDPNSLQNKKQGHGGCGRYQ 182
V + +RR I+ LCK K IC+ + N +G E S+ HGGCG Q
Sbjct: 127 AV--SIRDPKRRFDTIWRLCKPKMICDSDVSNEEGNSEGKEQAVSI------HGGCGNLQ 178
Query: 183 PNIRRSGLDLTAEWK----HVNEDSQEKKIPLTGKGVLLNKKQGHGG----CGRYQPNIR 234
P +R+ L LT WK E +Q +K +T + L K G R
Sbjct: 179 PEVRQQSLTLTGTWKVPKDEDGETAQPEKRNITPEMALAVFKSISSSEIRDLGLSNDYAR 238
Query: 235 RSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATH 293
+ +T + TG+G+ DDLT KL DII+ N + + + G+ H
Sbjct: 239 PEWMIITVLPVPPPPVRPSVSMDGTGQGMRGEDDLTFKLGDIIRANGNVRQAQQEGSPAH 298
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
++++ +LQ+HVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDF
Sbjct: 299 ILSDFEALLQYHVATYMDNDIAGTPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 358
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
SARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N++
Sbjct: 359 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIN 397
>gi|393219057|gb|EJD04545.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Fomitiporia mediterranea MF3/22]
Length = 1782
Score = 323 bits (829), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 196/435 (45%), Positives = 251/435 (57%), Gaps = 56/435 (12%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKL--GGLMDPRQGVI 60
A S AP+R VK+VQFGILSP+EI+ SV + I+ PE ++ KL GGL DPR G
Sbjct: 6 FAHSAAPIRKVKEVQFGILSPEEIKAYSVAK--IEHPEVIDEATHKLKVGGLNDPRMGTT 63
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPS--- 117
DR+ +CQTC M ECPGHFGHI+LA+PVFH GF+ K KIL C+C C KL S
Sbjct: 64 DRNFKCQTCGEGMAECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADTSSIT 123
Query: 118 -HPKVRDVVLKTKGQ--------------------------SRRRQAFIYDLCKGKNICE 150
R V++ G+ +RR A ++ CKGK C+
Sbjct: 124 GRSSSRAWVVRVIGRLTAALTIAHASQTDPAFADRIRLARDPKRRMAAVWSYCKGKMTCQ 183
Query: 151 GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN-------EDS 203
DE + +G E+ L K+GHGGCG QP IR+ GL L +K + +
Sbjct: 184 P-DEDQGDAEGMENVEPL---KKGHGGCGHQQPQIRKEGLKLLLHYKKNKNEEEEEFKAA 239
Query: 204 QEKKIPLTGKGVL--LNK--KQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLT 259
Q K P T V L K + G G + R + LT + ++
Sbjct: 240 QPDKRPFTPAEVFNVLRKISDEDLGLLGLSEEYARPDWMILTVL----PVPPPPVRPSIS 295
Query: 260 GKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
G L DDLT+KL DIIK + + R E GA HVI+E ++LQFHVAT DND+ G
Sbjct: 296 ADGGALRSEDDLTYKLGDIIKASANVRRCEEEGAPAHVISEFEQLLQFHVATYMDNDIAG 355
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
+P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 356 IPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSI 415
Query: 377 AQNMTFPEIVTPFNM 391
A +T+PE VTP+N+
Sbjct: 416 AMTLTYPERVTPYNI 430
>gi|156054160|ref|XP_001593006.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980]
gi|154703708|gb|EDO03447.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1746
Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 181/408 (44%), Positives = 248/408 (60%), Gaps = 28/408 (6%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ A S APLR ++++QFG+ SP+EI+ MSV I +PETM+ + P+ GL DPR G
Sbjct: 4 LNFAHSDAPLRTIQEIQFGLFSPEEIKNMSVAH--ILYPETMDESKMKPREQGLNDPRLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
IDR +C TC NM+ECPGHFGHI+LAKPV+H GF+ KT K+L VC C K+ + S+
Sbjct: 62 SIDRQFKCATCDQNMSECPGHFGHIELAKPVYHPGFLKKTKKLLEMVCHNCGKVKLDRSN 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGC 178
P + V + +RR I+ LCK K IC+ +M+ + A DP + K+ HGGC
Sbjct: 122 PAYKAAV--SIRDPKRRFEAIWKLCKTKMICDSDVQMNEEEFNA-DPK--EAAKKSHGGC 176
Query: 179 GRYQPNIRRSGLDLTAEWKHVNEDSQEKKIP---LTGKGVLLNKKQGHGGCGRYQPNIRR 235
G QP +R++ L L WK ++ E P + LN + I+
Sbjct: 177 GNIQPEVRQTALALWGTWKAPKDEDGEAVQPDKRQITPDMALNVFRSMSTA-----EIQD 231
Query: 236 SGLDLTA---EWKHVN-----EDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIR 284
GL+ EW + I + G G + DDLT+KL DII+ N + +
Sbjct: 232 VGLNADYARPEWMIITVLPVPPPPVRPSISMDGTGQGMRGEDDLTYKLGDIIRANGNVRQ 291
Query: 285 NESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRG 344
+ G+ H++ + +LQ+HVAT DND+ G P A+QKSG+P+K+I+ARLKGKEGR+RG
Sbjct: 292 AQQEGSPQHILQDFETLLQYHVATYMDNDIAGQPPALQKSGRPVKSIRARLKGKEGRLRG 351
Query: 345 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP N+D
Sbjct: 352 NLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARILTYPETVTPLNID 399
>gi|367018612|ref|XP_003658591.1| hypothetical protein MYCTH_2294525 [Myceliophthora thermophila ATCC
42464]
gi|347005858|gb|AEO53346.1| hypothetical protein MYCTH_2294525 [Myceliophthora thermophila ATCC
42464]
Length = 1754
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 180/405 (44%), Positives = 252/405 (62%), Gaps = 23/405 (5%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ A S AP+R +K++QFG+LSP+EI+ MSV I +PETM+ R P+ GGL DP G
Sbjct: 4 LIFAHSSAPIREIKEIQFGLLSPEEIKGMSVCH--IVYPETMDETRTKPRDGGLNDPLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
+DR +C+TC NMTECPGHFGHI+LA+PVFH GF+ +T K+L VC CSK+L S
Sbjct: 62 SVDRQFKCKTCTENMTECPGHFGHIELARPVFHPGFIRRTKKLLEMVCHNCSKVLADRSD 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKK-QGHGG 177
P+ + + R ++ ++D+CK K C+ D +DG + N ++ +GHGG
Sbjct: 122 PQYAAAMRIRDPKVRFKR--VWDICKSKRRCDN-DPPKQAEDGEYNLNGTGDRPVEGHGG 178
Query: 178 CGRYQPNIRRSGLDLTAEWKHVNED---SQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIR 234
CG QP IR+ L L + +ED ++EKKI + + ++ NI
Sbjct: 179 CGNIQPVIRQQALTLWGSIETKDEDGVKTKEKKIITPEMALNIFRRMSDEEMIDIGINIS 238
Query: 235 RSGLDLTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNE 286
++ EW + I + G G L DDLT+KL DII+ N + +
Sbjct: 239 QA----RPEWMIITVLPVPPPPVRPSISMDGTGTGLRNEDDLTYKLGDIIRANGNVRQAI 294
Query: 287 SSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNL 346
+ G+ H+I + +LQ+HVAT DND+ G P+A+QKSG+P+KAI+ARLKGKEGR+RGNL
Sbjct: 295 AEGSPQHIITDFENLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNL 354
Query: 347 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
MGKRVDFSARTVIT D N+ +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 355 MGKRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNI 399
>gi|402218945|gb|EJT99020.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731
SS1]
Length = 1770
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 179/398 (44%), Positives = 251/398 (63%), Gaps = 20/398 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S AP+ V++VQFGI+SP+EI+ SV + I+ E M+ G RP++GGLMDPR G IDR+
Sbjct: 11 SAAPVHKVREVQFGIMSPEEIKAYSVAK--IEHSEVMDESGYRPRVGGLMDPRMGTIDRN 68
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC +CPGHFGHI+LA+PV+H GF+ K KIL C+C C KL R
Sbjct: 69 YKCQTCGEGPGDCPGHFGHIELARPVYHAGFLVKVKKILECICVNCGKLKADIGDDTFR- 127
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
V++K +RR +++ CKGK +CE D + + + + +K HGGCG QP
Sbjct: 128 VLVKRADNPKRRLQIVWEYCKGKMLCESDDMKEEEE------DPEKPQKPSHGGCGHIQP 181
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTG-KGVLLNKKQGHGGCGRY-QPNIRRSGLD-- 239
IR+ GL L +K D ++ + L + LL + H + ++R GL
Sbjct: 182 LIRKDGLKLFLVYKKRKGDDDDEDVKLAQPEKRLLTAAEAHSILRKIPTSDLRLMGLSER 241
Query: 240 -LTAEWKHVN----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW ++ Q + ++ DDLT+KLADI+K + L ++++ GA HV
Sbjct: 242 YARPEWMILSVIPVPPPQVRPSIMSDSLRSEDDLTYKLADILKTSATLRKHDAEGAPAHV 301
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
++E ++LQFHVAT DN++ G PRAMQKSG+P+KAI++RLKGKEGR+RGNLMGKRVDFS
Sbjct: 302 VSEIEQLLQFHVATYMDNEIAGQPRAMQKSGRPVKAIRSRLKGKEGRLRGNLMGKRVDFS 361
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVIT DPN+ +D+VGVPRSIA +T+PE VT +N++
Sbjct: 362 ARTVITGDPNIALDEVGVPRSIAMTLTYPERVTKYNLE 399
>gi|154297219|ref|XP_001549037.1| hypothetical protein BC1G_12445 [Botryotinia fuckeliana B05.10]
gi|347440865|emb|CCD33786.1| similar to DNA-directed RNA polymerase ii largest subunit
[Botryotinia fuckeliana]
Length = 1742
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 179/405 (44%), Positives = 248/405 (61%), Gaps = 22/405 (5%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ A S APLR ++++QFG+ SP+EI+ MSV I +PETM+ + P+ GL DPR G
Sbjct: 4 LNFAHSDAPLRTIQEIQFGLFSPEEIKNMSVCH--ILYPETMDESKMKPREQGLNDPRLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
IDR +C TC NM+ECPGHFGHI+LAKPV+H GF+ KT K+L VC C K+ + S+
Sbjct: 62 SIDRQFKCATCDQNMSECPGHFGHIELAKPVYHPGFLKKTKKLLEMVCHNCGKVKLDRSN 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGC 178
P + V + +RR I+ LCK K +CE +M+ ++ DP + K+ HGGC
Sbjct: 122 PAYKAAV--SIRDPKRRFEAIWKLCKVKMVCESDVQMN-EEEFNGDPK--EAAKKSHGGC 176
Query: 179 GRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGL 238
G QP +R++ L L WK ++ E P K + + + I+ GL
Sbjct: 177 GNIQPEVRQTALALWGTWKAPKDEDGEAVQP--DKRQITPEMALNVFRSMTTAEIQDVGL 234
Query: 239 DLTA---EWKHVN-----EDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNES 287
+ EW + I + G G + DDLT+KL DII+ N + + +
Sbjct: 235 NADYARPEWMVITVLPVPPPPVRPSISMDGTGQGMRGEDDLTYKLGDIIRANGNVRQAQQ 294
Query: 288 SGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLM 347
G+ H++ + +LQ+HVAT DND+ G P A+QKSG+P+K+I+ARLKGKEGR+RGNLM
Sbjct: 295 EGSPQHILQDFETLLQYHVATYMDNDIAGQPPALQKSGRPVKSIRARLKGKEGRLRGNLM 354
Query: 348 GKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
GKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP N+D
Sbjct: 355 GKRVDFSARTVITGDPNLSLDEVGVPRSIARILTYPETVTPLNID 399
>gi|322712011|gb|EFZ03584.1| DNA-directed RNA polymerase II largest subunit [Metarhizium
anisopliae ARSEF 23]
Length = 1755
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 177/400 (44%), Positives = 246/400 (61%), Gaps = 25/400 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG++SP+EI+ MSV I +PETM+ R P+ GGL DP G IDR
Sbjct: 9 SSAPLKTVEEIQFGLMSPEEIKNMSVCH--ILYPETMDESRTKPRDGGLNDPLLGSIDRG 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C+TC +M++CPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L S P+
Sbjct: 67 FKCKTCTQSMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEF-- 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
V ++ R ++ +CK K CE D + N D E ++ HGGCG QP
Sbjct: 125 VTAINTRDAKLRFNRVWAVCKKKRRCENEDRNEKNDD--EFAPGMKPVAHNHGGCGNVQP 182
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD--- 239
+R++ L L A + ED +++ + V + + HG R + ++R GL+
Sbjct: 183 QVRQAALQLKAAFDVAQEDGPKRR-----ETVPITPEMAHGILRRISEEDLRHMGLNSDY 237
Query: 240 LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAA 291
EW + I + G G + DDLT+KL DII+ N + + G+
Sbjct: 238 ARPEWMILTVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRV
Sbjct: 298 QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 358 DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 397
>gi|358057836|dbj|GAA96338.1| hypothetical protein E5Q_03004 [Mixia osmundae IAM 14324]
Length = 2471
Score = 320 bits (821), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 182/437 (41%), Positives = 252/437 (57%), Gaps = 66/437 (15%)
Query: 2 AMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME----------GGRPKLGG 51
A S+AP+R V+++QFGILSP+E R +SV + I PE + GGRPK GG
Sbjct: 4 AFTYSQAPIRRVRQIQFGILSPEETRALSVAK--IDSPEIYQDVGLGAGSSVGGRPKAGG 61
Query: 52 LMDPRQGVIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSK 111
L DPR G IDR+ +CQTC M ECPGHFGHI+L +PV+HVGF+TK KIL CVC C
Sbjct: 62 LADPRMGTIDRNFKCQTCGEGMAECPGHFGHIELGRPVYHVGFMTKVKKILECVCVQCGT 121
Query: 112 LLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNK 171
L S + D V T+ +RR ++++ K C D DI +D L+ +
Sbjct: 122 LKSDLSELPLADAVRHTQN-PKRRLKLVHEVAAKKRQC-SRDAPDIQIIKDDDLTGLERR 179
Query: 172 KQG-------------HGGCGRYQPNIRRSGLDLTAEWKHVN------EDSQEKKIPLTG 212
+G HGGCG QP IR+ GL L + +D ++K+PL+
Sbjct: 180 DEGRASRLAQEYYAGRHGGCGSIQPVIRKEGLKLFLVYDKSTTDDDGGKDKSQEKVPLSA 239
Query: 213 KGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLT------------- 259
+ L I RS + ++ +++D + +
Sbjct: 240 RRCL---------------EILRSIPERDLDFMGLSKDEARPEYMILQILPVPPPPVRPS 284
Query: 260 -----GKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM 314
G DDLT+KL +I++ N +L++ E+ GA H++ E ++LQ+H+AT DND+
Sbjct: 285 VSVDGGAMRSEDDLTYKLIEILRTNQQLVKLEAEGAGAHILDEFEQLLQWHIATYMDNDL 344
Query: 315 PGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
PG P+AMQKSG+ +K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVP
Sbjct: 345 PGQPQAMQKSGRAVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPE 404
Query: 375 SIAQNMTFPEIVTPFNM 391
SIA+N+T+PE VTP+N+
Sbjct: 405 SIAKNLTYPERVTPYNI 421
>gi|116182152|ref|XP_001220925.1| DNA-directed RNA polymerase II largest subunit [Chaetomium globosum
CBS 148.51]
gi|88186001|gb|EAQ93469.1| DNA-directed RNA polymerase II largest subunit [Chaetomium globosum
CBS 148.51]
Length = 1756
Score = 320 bits (821), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 178/405 (43%), Positives = 250/405 (61%), Gaps = 24/405 (5%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ S AP+R +K++QFG+LSP+EI+ MSV I +PETM+ R P+ GGL DP G
Sbjct: 4 LIFTHSSAPIRTIKEIQFGLLSPEEIKGMSVCH--IVYPETMDESRTKPRDGGLNDPLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
+DR +C+TC NMTECPGHFGHI+L++PVFH GF+ + K+L VC CSK+L
Sbjct: 62 SVDRQFKCKTCTENMTECPGHFGHIELSRPVFHPGFIRRVKKLLEMVCHNCSKVLADRED 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSL-QNKKQGHGG 177
+ + + R ++ ++D+CK K CE +E+ KDG P+S Q + GHGG
Sbjct: 122 EQYAAAMRIRDPKVRFKR--VWDICKSKKRCE--NEVRKGKDGEFKPDSENQAAEGGHGG 177
Query: 178 CGRYQPNIRRSGLDLTAEWKHVNED---SQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIR 234
CG QP IR+ L L + +ED ++EKK+ + + ++ NI
Sbjct: 178 CGNTQPVIRQQALTLWGSVETKDEDGVKTKEKKVITPEMALNIFRRMSDDEMIDIGLNIS 237
Query: 235 RSGLDLTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNE 286
++ EW + I + G G L DDLT+KL DII+ N + +
Sbjct: 238 QA----RPEWMIITVLPVPPPPVRPSISMDGTGTGLRNEDDLTYKLGDIIRANGNVRQAI 293
Query: 287 SSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNL 346
+ G+ H+I + +LQ+HVAT DND+ G P+A+QKSG+P+KAI+ARLKGKEGR+RGNL
Sbjct: 294 AEGSPQHIITDFENLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNL 353
Query: 347 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
MGKRVDFSARTVIT D N+ +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 354 MGKRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNI 398
>gi|413915230|gb|AFW21477.1| RNA polymerase II largest subunit [Epichloe festucae]
Length = 1756
Score = 320 bits (820), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 246/400 (61%), Gaps = 25/400 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG++SP+EI+ MSV I +PETM+ R P+ GGL DP G IDR
Sbjct: 9 SSAPLKTVEEIQFGLMSPEEIKNMSVCH--ILYPETMDETRTKPRDGGLNDPLLGSIDRG 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C+TC M++CPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L S P+
Sbjct: 67 LKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + R + ++ +CK K CE D + N + E ++ HGGCG QP
Sbjct: 127 AIQTRDAKLRFNR--VWAVCKKKRRCENEDRTEKNDE--EFAPGMKPLVNNHGGCGNVQP 182
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD--- 239
+R++ L L A + V ED +++ + V + + HG R + ++RR GL+
Sbjct: 183 QVRQAALQLKAAFDVVQEDGPKRR-----ETVPITPEMAHGILKRISEEDLRRMGLNSDY 237
Query: 240 LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAA 291
EW + I + G + DDLT+KL DII+ N + + G+
Sbjct: 238 ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRV
Sbjct: 298 QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 358 DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 397
>gi|443896740|dbj|GAC74083.1| ngg1-interacting factor 3 protein NIF3L1 [Pseudozyma antarctica
T-34]
Length = 1947
Score = 320 bits (820), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 177/390 (45%), Positives = 238/390 (61%), Gaps = 28/390 (7%)
Query: 16 VQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMT 74
V I+ P + R +SV + I+ PE E G+P++GGL DPR G +DR+ +CQTC
Sbjct: 185 VPIDIILPGDCRAISVCK--IEVPEVKDEAGKPRIGGLSDPRLGTLDRNYKCQTCGEGHQ 242
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLK-TKGQSR 133
ECPGHFGHIDLAKPVFH+G++ K KIL CVCF+C KL V D ++K T+G +
Sbjct: 243 ECPGHFGHIDLAKPVFHIGYLGKVKKILECVCFHCGKLKADVLTDPVFDQIVKATRGSRK 302
Query: 134 RRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLT 193
RR +++ C K +CE D D ++ G E + K GHGGCGR QPNIRR GL L
Sbjct: 303 RRFQRVWEYCSKKMVCEADDPKDEDEMGFE-----EQAKPGHGGCGRVQPNIRREGLKLF 357
Query: 194 AEWKH---VNEDSQEKKI--------PLTGKGVLLNKKQGH--GGCGRYQPNIRRSGLDL 240
+WK +ED +E I P + +L K G + + R + L
Sbjct: 358 TQWKKGKGEDEDGEESAIAQPEKRPLPASEAHTVLKKMSSEDIAVLGLSEEHARPDWMIL 417
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
T + G+ DDLT+KLAD+I+ N L + E G H++A+ +
Sbjct: 418 TVMPVPPPPVRPSVQD--GGE----DDLTYKLADVIRANATLKKMEQEGTPAHILADFEQ 471
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
+LQFH AT DND+ G P+AMQ SG+P+K+++ARLKGKEGR+RGNLMGKRV+FSARTVIT
Sbjct: 472 LLQFHCATFMDNDIAGQPQAMQSSGRPIKSVRARLKGKEGRLRGNLMGKRVNFSARTVIT 531
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFN 390
DP L +D+VGVP+SIA+N+T+PE VT +N
Sbjct: 532 GDPLLELDEVGVPKSIARNLTYPERVTAYN 561
>gi|119494984|ref|XP_001264289.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
gi|119412451|gb|EAW22392.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
Length = 1750
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 183/409 (44%), Positives = 244/409 (59%), Gaps = 38/409 (9%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKAPLR +K++QFG+ SP+EI+RMSV +++PETM+ R P+ GL DPR G IDR
Sbjct: 9 SKAPLRTIKEIQFGLFSPEEIKRMSVVH--VEYPETMDEQRMRPRTKGLNDPRLGTIDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
C+TC ECPGHFGHI+LA PVFH+GF+TK K+L VC C K+ S K +
Sbjct: 67 WNCETCEEGQKECPGHFGHIELATPVFHIGFLTKVKKLLETVCHNCGKIKADTSDSKFLE 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKK--QGHGGCGRY 181
L+ + +RR I+ L K ICE D ++P S ++ K + HGGCG
Sbjct: 127 A-LRMR-DPKRRFDHIWRLSKDVLICEADPPPD-----EDEPFSKESSKPLRRHGGCGNA 179
Query: 182 QPNIRRSGLDLTAEWK----HVNEDSQ---EKKIPLTGKGVLLNKKQGHGGCGRYQPNIR 234
QP IR+ G+ L WK ++ED EKK+ + + + H ++R
Sbjct: 180 QPTIRKEGITLVGTWKPNKSMMDEDEMQQPEKKVITPQMALNVFRNISHE-------DVR 232
Query: 235 RSGLD---LTAEWKHVNEDSQEKKIPL--------TGKGVLLDDLTHKLADIIKCNNELI 283
GL EW + T DDLT+KLA+II+ N +
Sbjct: 233 IMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIIRANQNVQ 292
Query: 284 RNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIR 343
R E GA HV+ E +LQ+HVAT DND+ G P+AMQKS +P+KAI++RLKGKEGR+R
Sbjct: 293 RCEQEGAPEHVVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLR 352
Query: 344 GNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE+VTP+N++
Sbjct: 353 QNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIE 401
>gi|218200495|gb|EEC82922.1| hypothetical protein OsI_27866 [Oryza sativa Indica Group]
Length = 1449
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 170/375 (45%), Positives = 234/375 (62%), Gaps = 20/375 (5%)
Query: 29 MSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHFGHIDLAKP 88
MSV + I+ ETME G+PK GGL DPR G ID+ +C+TC M ECPGHFGH++LAKP
Sbjct: 1 MSVVQ--IEHAETMERGKPKPGGLSDPRLGTIDQKIKCETCMAGMAECPGHFGHLELAKP 58
Query: 89 VFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNI 148
+FH+GF+ + I+RCVCF CSK+L K + + ++R ++ IYD CK K +
Sbjct: 59 MFHIGFIKTVLSIMRCVCFNCSKILADEDDTKFKQALKIRNPKNRLKR--IYDACKSKKV 116
Query: 149 CEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK---HVNEDSQE 205
C GGD++D+ + D + GGCG QPNI G+ + AE+K N+D ++
Sbjct: 117 CAGGDDLDVQEQQDTD-----EPVKKRGGCGAQQPNITVDGMKMVAEFKAPKKKNDDQEQ 171
Query: 206 KKIPLTGKGVL-----LN--KKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDSQEKKIP 257
P+ K +L LN K+ C N + + D + + + +
Sbjct: 172 LPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFARPDWMILQVLPIPPPPVRPSVM 231
Query: 258 LTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGL 317
+ DDLTH+LA II+ N L R E +GA H+I E ++LQFH+AT DN++PG
Sbjct: 232 MDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNELPGQ 291
Query: 318 PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 377
PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDPN+ ID++GVP SIA
Sbjct: 292 PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIA 351
Query: 378 QNMTFPEIVTPFNMD 392
N+T+PE VTP+N++
Sbjct: 352 LNLTYPETVTPYNIE 366
>gi|413915222|gb|AFW21473.1| RNA polymerase II largest subunit [Epichloe glyceriae]
Length = 1761
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 174/400 (43%), Positives = 247/400 (61%), Gaps = 25/400 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG++SP+EI+ MSV I +PETM+ R P+ GGL DP G IDR
Sbjct: 9 SSAPLKTVEEIQFGLMSPEEIKNMSVCH--ILYPETMDETRTKPRDGGLNDPLLGSIDRG 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C+TC M++CPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L S P+
Sbjct: 67 LKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + R + ++ +CK K CE D + N + E +++ HGGCG QP
Sbjct: 127 AIQTRDAKLRFNR--VWAVCKKKRRCENEDRTEKNDE--EFAPGMKSVVNNHGGCGNVQP 182
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD--- 239
+R++ L L A + V ED +++ + V + + HG R + ++R+ GL+
Sbjct: 183 QVRQAALQLKAAFDVVQEDGPKRR-----ETVPITPEMAHGILKRISEEDLRQMGLNSDY 237
Query: 240 LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAA 291
EW + I + G + DDLT+KL DII+ N + + G+
Sbjct: 238 ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRV
Sbjct: 298 QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DFSARTVIT D N+ + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 358 DFSARTVITGDANISLHEVGVPRSIARTLTYPETVTPYNI 397
>gi|70996164|ref|XP_752837.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus
fumigatus Af293]
gi|66850472|gb|EAL90799.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus Af293]
gi|159131590|gb|EDP56703.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus A1163]
Length = 1750
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 183/409 (44%), Positives = 244/409 (59%), Gaps = 38/409 (9%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKAPLR +K++QFG+ SP+EI+RMSV +++PETM+ R P+ GL DPR G IDR
Sbjct: 9 SKAPLRTIKEIQFGLFSPEEIKRMSVVH--VEYPETMDEQRMRPRTKGLNDPRLGTIDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
C+TC ECPGHFGHI+LA PVFH+GF+TK K+L VC C K+ S K +
Sbjct: 67 WNCETCEEGQKECPGHFGHIELATPVFHIGFLTKVKKLLETVCHNCGKIKADTSDSKFLE 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKK--QGHGGCGRY 181
L+ + +RR I+ L K ICE D ++P S ++ K + HGGCG
Sbjct: 127 A-LRMR-DPKRRFDHIWRLSKDVLICEADPPPD-----EDEPFSKESSKPLRRHGGCGNA 179
Query: 182 QPNIRRSGLDLTAEWK----HVNEDSQ---EKKIPLTGKGVLLNKKQGHGGCGRYQPNIR 234
QP IR+ G+ L WK ++ED EKK+ + + + H ++R
Sbjct: 180 QPTIRKEGITLVGTWKPNKSMMDEDEMQQPEKKVITPQMALNVFRNISHE-------DVR 232
Query: 235 RSGLD---LTAEWKHVNEDSQEKKIPL--------TGKGVLLDDLTHKLADIIKCNNELI 283
GL EW + T DDLT+KLA+II+ N +
Sbjct: 233 IMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIIRANQNVQ 292
Query: 284 RNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIR 343
R E GA HV+ E +LQ+HVAT DND+ G P+AMQKS +P+KAI++RLKGKEGR+R
Sbjct: 293 RCEQEGAPEHVVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLR 352
Query: 344 GNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE+VTP+N++
Sbjct: 353 QNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIE 401
>gi|413915248|gb|AFW21486.1| RNA polymerase II largest subunit [Neotyphodium aotearoae]
Length = 1737
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 175/400 (43%), Positives = 246/400 (61%), Gaps = 25/400 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG++SP+EI+ MSV I +PETM+ R P+ GGL DP G IDR
Sbjct: 9 SSAPLKTVEEIQFGLMSPEEIKNMSVCH--ILYPETMDETRTKPRDGGLNDPLLGSIDRG 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C+TC M++CPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L S P+
Sbjct: 67 LKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + R + ++ +CK K CE D + N + E ++ HGGCG QP
Sbjct: 127 AIQTRDAKLRFNR--VWAVCKKKRRCENEDRTEKNDE--EFAPGMKPVVNNHGGCGNVQP 182
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD--- 239
+R++ L L A + V ED +++ + V + + HG R + ++R+ GL+
Sbjct: 183 QVRQAALQLKAAFDVVQEDGPKRR-----ETVPITPEMAHGILKRISEEDLRQMGLNSDY 237
Query: 240 LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAA 291
EW + I + G + DDLT+KL DII+ N + + G+
Sbjct: 238 ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRV
Sbjct: 298 QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 358 DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 397
>gi|413915220|gb|AFW21472.1| RNA polymerase II largest subunit [Epichloe elymi]
Length = 1754
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 175/400 (43%), Positives = 246/400 (61%), Gaps = 25/400 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG++SP+EI+ MSV I +PETM+ R P+ GGL DP G IDR
Sbjct: 9 SSAPLKTVEEIQFGLMSPEEIKNMSVCH--ILYPETMDETRTKPRDGGLNDPLLGSIDRG 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C+TC M++CPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L S P+
Sbjct: 67 LKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + R + ++ +CK K CE D + N + E ++ HGGCG QP
Sbjct: 127 AIQTRDAKLRFNR--VWAVCKKKRRCENEDRTEKNDE--EFAPGMKPVVNNHGGCGNVQP 182
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD--- 239
+R++ L L A + V ED +++ + V + + HG R + ++R+ GL+
Sbjct: 183 QVRQAALQLKAAFDVVQEDGPKRR-----ETVPITPEMAHGILKRISEEDLRQMGLNSDY 237
Query: 240 LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAA 291
EW + I + G + DDLT+KL DII+ N + + G+
Sbjct: 238 ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRV
Sbjct: 298 QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 358 DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 397
>gi|337263096|gb|AEI69259.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
romaleae]
gi|396081019|gb|AFN82638.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
romaleae SJ-2008]
Length = 1515
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 183/386 (47%), Positives = 233/386 (60%), Gaps = 44/386 (11%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
+K +QFG+ SP+EIR S I PE MEGG PK+GGL+D R G DR CQ+C G+
Sbjct: 10 IKSIQFGLFSPEEIRNGSA--ALIVHPEVMEGGVPKVGGLIDLRMGTTDRMYLCQSCGGD 67
Query: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQS 132
CPGHFGHI+L KP+FHVG+++K K+L CVCFYCSK+ V PK R V
Sbjct: 68 NFSCPGHFGHIELTKPIFHVGYISKIKKVLECVCFYCSKIKV----PK-RGV-------- 114
Query: 133 RRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDL 192
R ++ + KGK++CEG D G GCG QP +++ GL L
Sbjct: 115 RSTLNNVWSMSKGKSVCEGEVVGD-----------------GRSGCGNRQPVVKKEGLTL 157
Query: 193 TAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----H 246
A K E+S E K+ L G+ V + KK C +++ S EW
Sbjct: 158 VAFMK--GEESNEGKVMLNGERVYSIFKKISDEDCVYMGFDLKYS----RPEWMIFTVLL 211
Query: 247 VNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHV 306
V S I + G DDLTHKLADIIK N L + E GA H++ + ++LQFHV
Sbjct: 212 VPPPSVRPSIVMEGSLRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLLQFHV 271
Query: 307 ATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLR 366
ATL DND+ G P+A+QKSG+PLK++ ARLKGKEGRIRGNLMGKRVDFSARTVITPDPN+
Sbjct: 272 ATLIDNDIGGQPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPDPNIS 331
Query: 367 IDQVGVPRSIAQNMTFPEIVTPFNMD 392
+++VGVP +A+ TFPE VT FN+D
Sbjct: 332 LEEVGVPLEVAKVHTFPEKVTSFNID 357
>gi|413915228|gb|AFW21476.1| RNA polymerase II largest subunit [Epichloe festucae]
Length = 1756
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 175/400 (43%), Positives = 246/400 (61%), Gaps = 25/400 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG++SP+EI+ MSV I +PETM+ R P+ GGL DP G IDR
Sbjct: 9 SSAPLKTVEEIQFGLMSPEEIKNMSVCH--ILYPETMDETRTKPRDGGLNDPLLGSIDRG 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C+TC M++CPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L S P+
Sbjct: 67 LKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + R + ++ +CK K CE D + N + E ++ HGGCG QP
Sbjct: 127 AIQTRDAKLRFNR--VWAVCKKKRRCENEDRTEKNDE--EFAPGMKPLVNNHGGCGNVQP 182
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD--- 239
+R++ L L A + V ED +++ + V + + HG R + ++R+ GL+
Sbjct: 183 QVRQAALQLKAAFDVVQEDGPKRR-----ETVPITPEMAHGILKRISEEDLRQMGLNSDY 237
Query: 240 LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAA 291
EW + I + G + DDLT+KL DII+ N + + G+
Sbjct: 238 ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRV
Sbjct: 298 QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 358 DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 397
>gi|413915244|gb|AFW21484.1| RNA polymerase II largest subunit [Claviceps paspali]
Length = 1764
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 175/400 (43%), Positives = 245/400 (61%), Gaps = 25/400 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG++SP+EI+ MSV I +PETM+ R P+ GGL DP G IDR
Sbjct: 9 SSAPLKTVEEIQFGLMSPEEIKNMSVCH--ILYPETMDETRTKPRDGGLNDPLLGSIDRG 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C+TC M++CPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L S P+
Sbjct: 67 FKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + R + ++ +CK K CE D + N D + ++ HGGCG QP
Sbjct: 127 AINTRDAKLRFNR--VWAVCKKKRRCENEDRTEKNDD--DFAPGMKAVVNNHGGCGNVQP 182
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD--- 239
+R++ L L A + V ED +++ + V + + HG R + ++R GL+
Sbjct: 183 QVRQAALQLKAAFDVVQEDGPKRR-----ETVPITPEMAHGILKRISEEDLRHMGLNSDY 237
Query: 240 LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAA 291
EW + I + G + DDLT+KL DII+ N + + G+
Sbjct: 238 ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRV
Sbjct: 298 QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 358 DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 397
>gi|413915226|gb|AFW21475.1| RNA polymerase II largest subunit [Epichloe amarillans]
Length = 1752
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 175/400 (43%), Positives = 246/400 (61%), Gaps = 25/400 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG++SP+EI+ MSV I +PETM+ R P+ GGL DP G IDR
Sbjct: 9 SSAPLKTVEEIQFGLMSPEEIKNMSVCH--ILYPETMDETRTKPRDGGLNDPLLGSIDRG 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C+TC M++CPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L S P+
Sbjct: 67 LKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + R + ++ +CK K CE D + N + E ++ HGGCG QP
Sbjct: 127 AIQTRDAKLRFNR--VWAVCKKKRRCENEDRTEKNDE--EFAPGMKPVVNNHGGCGNVQP 182
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD--- 239
+R++ L L A + V ED +++ + V + + HG R + ++R+ GL+
Sbjct: 183 QVRQAALQLKAAFDVVQEDGPKRR-----ETVPITPEMAHGILKRISEEDLRQMGLNSDY 237
Query: 240 LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAA 291
EW + I + G + DDLT+KL DII+ N + + G+
Sbjct: 238 ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRV
Sbjct: 298 QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 358 DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 397
>gi|19172989|ref|NP_597540.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
gi|51702033|sp|Q8SSC4.1|RPB1_ENCCU RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|19168656|emb|CAD26175.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
Length = 1599
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 184/388 (47%), Positives = 233/388 (60%), Gaps = 48/388 (12%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
+K +QFG+ SPDE+R SV I PE MEGG PK GGL+D R G DR CQ+C G+
Sbjct: 10 IKSIQFGLFSPDEVRNGSV--ALIVHPEVMEGGVPKTGGLIDLRMGTTDRMYLCQSCGGD 67
Query: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQS 132
CPGHFGHI+L KP+FHVG+++K K+L CVCFYCSK+ + P+ KG
Sbjct: 68 NFSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKI----PR--------KG-I 114
Query: 133 RRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDL 192
+ + ++ + KG+++CEG L N G GCG QP I+R GL L
Sbjct: 115 KSTLSNVWGMSKGRSVCEG--------------EVLDN---GRSGCGNKQPVIKREGLTL 157
Query: 193 TAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWK---- 245
A K E+S E K+ L G+ V K+ Y G DL EW
Sbjct: 158 VAFMK--GEESNEGKVMLNGERVYSIFKKISDEDSVYM------GFDLKYSRPEWMILTV 209
Query: 246 -HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQF 304
V + I + G DDLTHKLADIIK N L + E GA H++ + ++LQF
Sbjct: 210 LLVPPPAVRPSIVMEGSLRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLLQF 269
Query: 305 HVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
HVAT DND+ GLP+A+QKSG+PLK++ ARLKGKEGRIRGNLMGKRVDFSARTVITPDPN
Sbjct: 270 HVATFIDNDIGGLPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 329
Query: 365 LRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+ +++VGVP IA+ TFPE VT FN+D
Sbjct: 330 ISLEEVGVPLEIAKIHTFPEKVTSFNID 357
>gi|449303065|gb|EMC99073.1| hypothetical protein BAUCODRAFT_85149 [Baudoinia compniacensis UAMH
10762]
Length = 1789
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 183/408 (44%), Positives = 247/408 (60%), Gaps = 35/408 (8%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG+ SP+EI+ MSV I++PETM+ R P+ GL DP+ G IDR
Sbjct: 9 SDAPLKTVQEIQFGLFSPEEIKNMSVCH--IEYPETMDEQRHRPREKGLNDPKLGSIDRG 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
++C TC CPGHFGHI+LA+PVFHVGF+ K KIL VC C K+L S+P
Sbjct: 67 TQCATCKEVPEICPGHFGHIELAQPVFHVGFIIKIKKILESVCHNCGKILADESNPAFAQ 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + + RR +A ++ +CKG +IC+ + + DP + K +GHGGCG QP
Sbjct: 127 AI-RLRDPKRRFEA-VHKICKGISICQVDAPPEDDGGYGPDPKAAL-KVKGHGGCGNAQP 183
Query: 184 NIRRSGLDLTAEWKHVNEDSQEK-------KIPLTGKGVLLNKKQGHGGCGRYQPNIRRS 236
IR+ L L K D EK KIP+T + L R + +
Sbjct: 184 IIRKEQLRLNGTIKVAKSDEDEKGSKAESEKIPITPQYAL--------NVFRAISDEELA 235
Query: 237 GLDLTAEWKH----------VNEDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELI 283
L L A++ V + I + G + DDLT+KL+DII+ N+ +
Sbjct: 236 RLGLNADYARPEWMVLTVLPVPPPAVRPSISVDGTSQGMRSEDDLTYKLSDIIRANSNVR 295
Query: 284 RNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIR 343
R E G+ HV E +++LQFHVAT DND+ G+PRA+QKSG+P+K+I+ARLK KEGR+R
Sbjct: 296 RCEMEGSPQHVTEEFVQLLQFHVATYMDNDIAGVPRALQKSGRPVKSIRARLKSKEGRLR 355
Query: 344 GNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
GNLMGKRVDFSARTVIT DPNL +DQVGVPRSIA+ +TFPE V +N+
Sbjct: 356 GNLMGKRVDFSARTVITGDPNLDLDQVGVPRSIAKTLTFPETVNAYNI 403
>gi|413915218|gb|AFW21471.1| RNA polymerase II largest subunit [Epichloe typhina]
Length = 1746
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 175/400 (43%), Positives = 246/400 (61%), Gaps = 25/400 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG++SP+EI+ MSV I +PETM+ R P+ GGL DP G IDR
Sbjct: 9 SSAPLKTVEEIQFGLMSPEEIKNMSVCH--ILYPETMDETRTKPRDGGLNDPLLGSIDRG 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C+TC M++CPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L S P+
Sbjct: 67 LKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + R + ++ +CK K CE D + N + E ++ HGGCG QP
Sbjct: 127 AIQTRDAKLRFNR--VWAVCKKKRRCENEDRTEKNDE--EFAPGMKPVVNNHGGCGNVQP 182
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD--- 239
+R++ L L A + V ED +++ + V + + HG R + ++R+ GL+
Sbjct: 183 QVRQAALQLKAAFDVVQEDGPKRR-----ETVPITPEMAHGILKRISEEDLRQMGLNSDY 237
Query: 240 LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAA 291
EW + I + G + DDLT+KL DII+ N + + G+
Sbjct: 238 ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRV
Sbjct: 298 QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 358 DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 397
>gi|413915224|gb|AFW21474.1| RNA polymerase II largest subunit [Epichloe typhina]
Length = 1746
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/400 (43%), Positives = 246/400 (61%), Gaps = 25/400 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG++SP+EI+ MSV I +PETM+ R P+ GGL DP G IDR
Sbjct: 9 SSAPLKTVEEIQFGLMSPEEIKNMSVCH--ILYPETMDETRTKPRDGGLNDPLLGSIDRG 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C+TC M++CPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L S P+
Sbjct: 67 LKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + R + ++ +CK K CE D + N + E ++ HGGCG QP
Sbjct: 127 AIQTRDAKLRFNR--VWAVCKKKRRCENEDRTEKNDE--EFAPGMKPVVNNHGGCGNVQP 182
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD--- 239
+R++ L L A + V ED +++ + V + + HG R + ++R+ GL+
Sbjct: 183 QVRQAALQLKAAFDVVQEDGPKRR-----ETVPITPEMAHGILKRISEEDLRQMGLNSDY 237
Query: 240 LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAA 291
EW + I + G + DDLT+KL DII+ N + + G+
Sbjct: 238 ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRV
Sbjct: 298 QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 358 DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 397
>gi|449329642|gb|AGE95912.1| DNA-directed RNA polymerase II, partial [Encephalitozoon cuniculi]
Length = 1487
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 184/388 (47%), Positives = 233/388 (60%), Gaps = 48/388 (12%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
+K +QFG+ SPDE+R SV I PE MEGG PK GGL+D R G DR CQ+C G+
Sbjct: 10 IKSIQFGLFSPDEVRNGSV--ALIVHPEVMEGGVPKTGGLIDLRMGTTDRMYLCQSCGGD 67
Query: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQS 132
CPGHFGHI+L KP+FHVG+++K K+L CVCFYCSK+ + P+ KG
Sbjct: 68 NFSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKI----PR--------KG-I 114
Query: 133 RRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDL 192
+ + ++ + KG+++CEG L N G GCG QP I+R GL L
Sbjct: 115 KSTLSNVWGMSKGRSVCEG--------------EVLDN---GRSGCGNKQPVIKREGLTL 157
Query: 193 TAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWK---- 245
A K E+S E K+ L G+ V K+ Y G DL EW
Sbjct: 158 VAFMK--GEESNEGKVMLNGERVYSIFKKISDEDSVYM------GFDLKYSRPEWMILTV 209
Query: 246 -HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQF 304
V + I + G DDLTHKLADIIK N L + E GA H++ + ++LQF
Sbjct: 210 LLVPPPAVRPSIVMEGSLRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLLQF 269
Query: 305 HVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
HVAT DND+ GLP+A+QKSG+PLK++ ARLKGKEGRIRGNLMGKRVDFSARTVITPDPN
Sbjct: 270 HVATFIDNDIGGLPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 329
Query: 365 LRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+ +++VGVP IA+ TFPE VT FN+D
Sbjct: 330 ISLEEVGVPLEIAKIHTFPEKVTSFNID 357
>gi|429851276|gb|ELA26479.1| DNA-dependent RNA polymerase ii largest [Colletotrichum
gloeosporioides Nara gc5]
Length = 1754
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 177/405 (43%), Positives = 246/405 (60%), Gaps = 24/405 (5%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ S AP++ V+++QFG+++P+EI+ MSV + +PETM+ R P+ GGL DP G
Sbjct: 4 LYFTHSSAPIKTVEEIQFGLMAPEEIKNMSVCH--VLYPETMDETRTKPRDGGLNDPMLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
IDR +C+TC M ECPGHFGHI+LAKPV+H GF+ K K+L VC CSK+L S
Sbjct: 62 SIDRQFKCKTCNQAMGECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADRSD 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGC 178
P+ V + R + I+++CK K CE + ++ D E ++ HGGC
Sbjct: 122 PEFLQAVNTRDPKVRFNR--IWNICKKKTRCEN-ETKEVKNDDGEYSLGMKQAPVNHGGC 178
Query: 179 GRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPN-IRRSG 237
G QP +R L L A+++ ED +KK + + + H R + +R G
Sbjct: 179 GNIQPRVRHKALQLIAKYESSGEDGVKKK-----EEPQITPEMAHNILRRISDDDLRDMG 233
Query: 238 LDLTA---EW-----KHVNEDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNE 286
L+L EW V I + G G L DDLT+KL DII+ N+ + +
Sbjct: 234 LNLEYARPEWMIVTVLPVPPPPVRPSISMDGTGQGLRNEDDLTYKLGDIIRANSNVKQAI 293
Query: 287 SSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNL 346
G+ H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNL
Sbjct: 294 REGSPAHIAQDFEQLLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNL 353
Query: 347 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
MGKRVDFSARTVIT D NL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 354 MGKRVDFSARTVITGDANLSLDEVGVPRSIARTLTYPETVTPYNI 398
>gi|326472846|gb|EGD96855.1| DNA-dependent RNA polymerase II largest subunit [Trichophyton
tonsurans CBS 112818]
Length = 1657
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 183/409 (44%), Positives = 246/409 (60%), Gaps = 39/409 (9%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKA LR +K++QFG+LSP+EI+RMSV +++PETM+ R P+ GL DPR G IDR+
Sbjct: 9 SKAQLRTIKEIQFGLLSPEEIKRMSVCH--VEYPETMDDQRQRPREKGLNDPRLGTIDRN 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TC + +CPGHFGHI+L+ PVFH+GF+TK K+L VC C K+ + S K D
Sbjct: 67 WRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQKYLD 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKK--QGHGGCGRY 181
L+ + +R A I+ L K ICE + +DP + ++ K QGHGGCG
Sbjct: 127 A-LRFRDPKKRFDA-IWRLSKDILICEA------DPPEEDDPFAKESSKPVQGHGGCGNV 178
Query: 182 QPNIRRSGLDLTAEWKHV--------NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNI 233
QP +R+ G+ L WK NE Q +K +T + L + + ++
Sbjct: 179 QPQVRKEGITLMGTWKPSKMRDMMDDNEIQQPEKKQITPQMALTIFRNIS------EEDV 232
Query: 234 RRSGLD---LTAEWKHVNEDSQEKKIPLT-----GKGVLL---DDLTHKLADIIKCNNEL 282
R GL EW + G G DDLT+KLA+II+ N +
Sbjct: 233 RLMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGTGQRGEDDLTYKLAEIIRANQNV 292
Query: 283 IRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRI 342
R E G+ HV+ E +LQ+HVAT DND+ G+P+AMQKS +P+KAI+ RLKGKEGR+
Sbjct: 293 TRCEQEGSPEHVVREFESLLQYHVATYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRL 352
Query: 343 RGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
R NLMGKRVDFSARTVIT DPNL +D+VGVP SIAQ +T+PE+VTP+N+
Sbjct: 353 RQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNI 401
>gi|413915234|gb|AFW21479.1| RNA polymerase II largest subunit [Neotyphodium gansuense var.
inebrians]
Length = 1761
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/400 (43%), Positives = 245/400 (61%), Gaps = 25/400 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG++SP+EI+ MSV I +PETM+ R P+ GGL DP G IDR
Sbjct: 9 SSAPLKTVEEIQFGLMSPEEIKNMSVCH--ILYPETMDETRTKPRDGGLNDPLLGSIDRG 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C+TC M++CPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L S P+
Sbjct: 67 FKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + R + ++ +CK K CE D + N + E ++ HGGCG QP
Sbjct: 127 AIHTRDAKLRFNR--VWAVCKKKRRCENEDHTEKNDE--EFAPGMKPVVNNHGGCGNVQP 182
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD--- 239
+R++ L L A + V ED +++ + V + + HG R + ++R GL+
Sbjct: 183 QVRQAALQLKAAFDVVQEDGPKRR-----ETVPITPEMAHGILKRISEEDLRHMGLNSDY 237
Query: 240 LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAA 291
EW + I + G + DDLT+KL DII+ N + + G+
Sbjct: 238 ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRV
Sbjct: 298 QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 358 DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 397
>gi|413915232|gb|AFW21478.1| RNA polymerase II largest subunit [Neotyphodium gansuense]
Length = 1761
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/400 (43%), Positives = 245/400 (61%), Gaps = 25/400 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG++SP+EI+ MSV I +PETM+ R P+ GGL DP G IDR
Sbjct: 9 SSAPLKTVEEIQFGLMSPEEIKNMSVCH--ILYPETMDETRTKPRDGGLNDPLLGSIDRG 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C+TC M++CPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L S P+
Sbjct: 67 FKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + R + ++ +CK K CE D + N + E ++ HGGCG QP
Sbjct: 127 AIHTRDAKLRFNR--VWAVCKKKRRCENEDRTEKNDE--EFAPGMKPVVNNHGGCGNVQP 182
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD--- 239
+R++ L L A + V ED +++ + V + + HG R + ++R GL+
Sbjct: 183 QVRQAALQLKAAFDVVQEDGPKRR-----ETVPITPEMAHGILKRISEEDLRHMGLNSDY 237
Query: 240 LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAA 291
EW + I + G + DDLT+KL DII+ N + + G+
Sbjct: 238 ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRV
Sbjct: 298 QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 358 DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 397
>gi|302662921|ref|XP_003023110.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
gi|291187089|gb|EFE42492.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
Length = 1744
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 183/409 (44%), Positives = 246/409 (60%), Gaps = 39/409 (9%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKA LR +K++QFG+LSP+EI+RMSV +++PETM+ R P+ GL DPR G IDR+
Sbjct: 9 SKAQLRTIKEIQFGLLSPEEIKRMSVCH--VEYPETMDDQRQRPREKGLNDPRLGTIDRN 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TC + +CPGHFGHI+L+ PVFH+GF+TK K+L VC C K+ + S K D
Sbjct: 67 WRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQKYLD 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKK--QGHGGCGRY 181
L+ + +R A I+ L K ICE + +DP + ++ K QGHGGCG
Sbjct: 127 A-LRFRDPKKRFDA-IWRLSKDILICEA------DPPEEDDPFAKESSKPVQGHGGCGNV 178
Query: 182 QPNIRRSGLDLTAEWKHV--------NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNI 233
QP +R+ G+ L WK NE Q +K +T + L + + ++
Sbjct: 179 QPQVRKEGITLMGTWKPSKMRDMMDDNEIQQPEKKQITPQMALTIFRNIS------EEDV 232
Query: 234 RRSGLD---LTAEWKHVNEDSQEKKIPLT-----GKGVLL---DDLTHKLADIIKCNNEL 282
R GL EW + G G DDLT+KLA+II+ N +
Sbjct: 233 RLMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGTGQRGEDDLTYKLAEIIRANQNV 292
Query: 283 IRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRI 342
R E G+ HV+ E +LQ+HVAT DND+ G+P+AMQKS +P+KAI+ RLKGKEGR+
Sbjct: 293 TRCEQEGSPEHVVREFESLLQYHVATYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRL 352
Query: 343 RGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
R NLMGKRVDFSARTVIT DPNL +D+VGVP SIAQ +T+PE+VTP+N+
Sbjct: 353 RQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNI 401
>gi|327294163|ref|XP_003231777.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
CBS 118892]
gi|326465722|gb|EGD91175.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
CBS 118892]
Length = 1744
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 183/409 (44%), Positives = 246/409 (60%), Gaps = 39/409 (9%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKA LR +K++QFG+LSP+EI+RMSV +++PETM+ R P+ GL DPR G IDR+
Sbjct: 9 SKAQLRTIKEIQFGLLSPEEIKRMSVCH--VEYPETMDDQRQRPREKGLNDPRLGTIDRN 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TC + +CPGHFGHI+L+ PVFH+GF+TK K+L VC C K+ + S K D
Sbjct: 67 WRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQKYLD 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKK--QGHGGCGRY 181
L+ + +R A I+ L K ICE + +DP + ++ K QGHGGCG
Sbjct: 127 A-LRFRDPKKRFDA-IWRLSKDILICEA------DPPEEDDPFAKESSKPVQGHGGCGNV 178
Query: 182 QPNIRRSGLDLTAEWKHV--------NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNI 233
QP +R+ G+ L WK NE Q +K +T + L + + ++
Sbjct: 179 QPQVRKEGITLMGTWKPSKMRDMMDDNEIQQPEKKQITPQMALTIFRNIS------EEDV 232
Query: 234 RRSGLD---LTAEWKHVNEDSQEKKIPLT-----GKGVLL---DDLTHKLADIIKCNNEL 282
R GL EW + G G DDLT+KLA+II+ N +
Sbjct: 233 RLMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGTGQRGEDDLTYKLAEIIRANQNV 292
Query: 283 IRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRI 342
R E G+ HV+ E +LQ+HVAT DND+ G+P+AMQKS +P+KAI+ RLKGKEGR+
Sbjct: 293 TRCEQEGSPEHVVREFESLLQYHVATYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRL 352
Query: 343 RGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
R NLMGKRVDFSARTVIT DPNL +D+VGVP SIAQ +T+PE+VTP+N+
Sbjct: 353 RQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNI 401
>gi|296822712|ref|XP_002850330.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
113480]
gi|238837884|gb|EEQ27546.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
113480]
Length = 1748
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 183/409 (44%), Positives = 247/409 (60%), Gaps = 39/409 (9%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKA LR +K++QFG+LSP+EI+RMSV +++PETM+ R P+ GL DPR G IDR+
Sbjct: 9 SKAQLRTIKEIQFGLLSPEEIKRMSVCH--VEYPETMDDQRQRPREKGLNDPRLGTIDRN 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TC + +CPGHFGHI+L+ PVFH+GF+TK K+L VC C K+ + S K D
Sbjct: 67 WRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQKYLD 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKK--QGHGGCGRY 181
L+ + +R A I+ L K ICE + +DP + ++ K QGHGGCG
Sbjct: 127 A-LRFRDPKKRFDA-IWRLSKDILICEA------DPPEEDDPFAKESSKPVQGHGGCGNV 178
Query: 182 QPNIRRSGLDLTAEWKHV--------NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNI 233
QP +R+ G+ L WK NE Q +K +T + L + + ++
Sbjct: 179 QPQVRKEGITLMGTWKPSKMRDMMDDNEIQQPEKKQITPQMALTIFRNIS------EEDV 232
Query: 234 RRSGLD---LTAEWKHVNEDSQEKKIPL-------TGKGVL-LDDLTHKLADIIKCNNEL 282
R GL EW + +G G DDLT+KLA+II+ N +
Sbjct: 233 RLMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGTGQRGEDDLTYKLAEIIRANQNV 292
Query: 283 IRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRI 342
R E G+ HV+ E +LQ+HVAT DND+ G+P+AMQKS +P+KAI+ RLKGKEGR+
Sbjct: 293 TRCEQEGSPEHVVREFESLLQYHVATYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRL 352
Query: 343 RGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
R NLMGKRVDFSARTVIT DPNL +D+VGVP SIAQ +T+PE+VTP+N+
Sbjct: 353 RQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNI 401
>gi|413915236|gb|AFW21480.1| RNA polymerase II largest subunit [Periglandula ipomoeae]
Length = 1760
Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/400 (43%), Positives = 246/400 (61%), Gaps = 25/400 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG+++P+EI+ MSV I +PETM+ R P+ GGL DP G IDR
Sbjct: 9 SSAPLKTVEEIQFGLMAPEEIKNMSVCH--ILYPETMDESRTKPRDGGLNDPLLGSIDRG 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C+TC M++CPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L S P+
Sbjct: 67 FKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEF-- 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
V + ++ R ++ +CK K CE D + N + E ++ HGGCG QP
Sbjct: 125 VAAISTRDAKLRFNRVWAVCKKKQRCENEDRTEKNDE--EFAPGMKPMLNNHGGCGNVQP 182
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD--- 239
+R++ L L A + V ED +++ + V + + HG R + ++R GL+
Sbjct: 183 QVRQAALQLKAAFDVVQEDGPKRR-----ETVPITPEMAHGILRRISEEDLRHMGLNSDY 237
Query: 240 LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAA 291
EW + I + G + DDLT+KL DII+ N + + G+
Sbjct: 238 ARPEWMIITVLPVPPPLVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRV
Sbjct: 298 QHIARDFEELLQYHVATYMDNDIVGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 358 DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 397
>gi|67517057|ref|XP_658413.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
gi|40746483|gb|EAA65639.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
gi|259488909|tpe|CBF88741.1| TPA: DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q873Q6] [Aspergillus
nidulans FGSC A4]
Length = 1745
Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 240/400 (60%), Gaps = 21/400 (5%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKAPLR + ++QFG+ SP+EI+RMSV +++PETM+ R P+ GL DPR G IDR
Sbjct: 9 SKAPLRTIAEIQFGLFSPEEIKRMSVVH--VEYPETMDDQRQRPRTKGLNDPRLGTIDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
C+TC ECPGHFGHI+LA PVFH+GF+TK K+L VC C K+ + S PK D
Sbjct: 67 WNCETCEEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKANTSDPKFLD 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L+ + +RR I+ L K ICE + ++ G E ++ HGGCG QP
Sbjct: 127 A-LRIR-DPKRRFDHIWRLSKDILICEADPPPEDDEYGKESSKPVRL----HGGCGNAQP 180
Query: 184 NIRRSGLDLTAEWK-------HVNEDSQEKKIPLTGKGVLLNKKQGHGGC---GRYQPNI 233
+R+ G+ L WK ++ EKKI + + + H G
Sbjct: 181 TVRKEGITLVGTWKPSKSMMDEMDMQQPEKKIITPQMALNIFRNISHEDVRIMGLSNDYA 240
Query: 234 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LDDLTHKLADIIKCNNELIRNESSGAAT 292
R + LT + + G DDLT+KLA+I++ N + R E GA
Sbjct: 241 RPEWMILTVLPVPPPPVRPSVVVGGSTSGQRGEDDLTYKLAEIVRANQNVQRCEQEGAPE 300
Query: 293 HVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 352
HV+ E +LQ+H+AT DND+ G P+AMQKS +P+KAI++RLKGKEGR+R NLMGKRVD
Sbjct: 301 HVVREFESLLQYHIATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVD 360
Query: 353 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
FSARTVIT DPNL +D+VGVP+SIA+ +T+PE+VTP+N++
Sbjct: 361 FSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIE 400
>gi|315056155|ref|XP_003177452.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum
CBS 118893]
gi|311339298|gb|EFQ98500.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum
CBS 118893]
Length = 1748
Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 183/409 (44%), Positives = 247/409 (60%), Gaps = 39/409 (9%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKA LR +K++QFG+LSP+EI+RMSV +++PETM+ R P+ GL DPR G IDR+
Sbjct: 9 SKAQLRTIKEIQFGLLSPEEIKRMSVCH--VEYPETMDDQRQRPREKGLNDPRLGTIDRN 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TC + +CPGHFGHI+L+ PVFH+GF+TK K+L VC C K+ + S K D
Sbjct: 67 WRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQKYLD 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKK--QGHGGCGRY 181
L+ + +R A I+ L K +CE D +DP + ++ K QGHGGCG
Sbjct: 127 A-LRFRDPKKRFDA-IWRLSKDILVCEADPPED------DDPFAKESSKPVQGHGGCGNV 178
Query: 182 QPNIRRSGLDLTAEWKHV--------NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNI 233
QP +R+ G+ L WK NE Q +K +T + L + + ++
Sbjct: 179 QPQVRKEGITLMGTWKPSKMRDMMDDNEIQQPEKKQITPQMALTIFRNIS------EEDV 232
Query: 234 RRSGLD---LTAEWKHVNEDSQEKKIPL-------TGKGVL-LDDLTHKLADIIKCNNEL 282
R GL EW + +G G DDLT+KLA+II+ N +
Sbjct: 233 RLMGLSNDYARPEWMVITVLPVPPPPVRPSVLVGGSGTGQRGEDDLTYKLAEIIRANQNV 292
Query: 283 IRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRI 342
R E G+ HV+ E +LQ+HVAT DND+ G+P+AMQKS +P+KAI+ RLKGKEGR+
Sbjct: 293 TRCEQEGSPEHVVREFESLLQYHVATYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRL 352
Query: 343 RGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
R NLMGKRVDFSARTVIT DPNL +D+VGVP SIAQ +T+PE+VTP+N+
Sbjct: 353 RQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNI 401
>gi|389631979|ref|XP_003713642.1| DNA-directed RNA polymerase II largest subunit [Magnaporthe oryzae
70-15]
gi|351645975|gb|EHA53835.1| DNA-directed RNA polymerase II largest subunit [Magnaporthe oryzae
70-15]
Length = 1757
Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 174/410 (42%), Positives = 252/410 (61%), Gaps = 31/410 (7%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ A S APL+ ++++QFG+L+P+EI+ MSV +++P+TM+ R P+ GGL DP G
Sbjct: 4 LIFAPSSAPLKTIEEIQFGVLAPEEIKNMSVVH--VQYPDTMDETRTKPREGGLNDPLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
DR +C+TC +M CPGHFGHI+LAKPV+H GF+ KT KIL VC CSKLL ++
Sbjct: 62 TTDRQYKCKTCNNDMNNCPGHFGHIELAKPVYHPGFINKTKKILEMVCHQCSKLLCDENN 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN----KKQG 174
+ L+ + + R A ++ CKGK +CE I G ++ +S+ +K
Sbjct: 122 DEQFAQALRLR-DPKARFAMVWKACKGKKVCE------IETGGKDEKDSIDTATGIEKVP 174
Query: 175 HGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNI 233
HGGCG P+IR+ L L A+ + E+ +K++ K L+ +Q H + ++
Sbjct: 175 HGGCGSTHPDIRKKALQLYAKVEEAREEGMKKEV----KDKLITPEQAHHILKHIPEDDL 230
Query: 234 RRSGLD---LTAEW-----KHVNEDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNEL 282
+ GL+ EW V I + G + DDLT+KL DII+ N +
Sbjct: 231 WKMGLNKDYARPEWLIVTVLPVPPPPVRPSISVDGTSQGMRSEDDLTYKLGDIIRANGNV 290
Query: 283 IRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRI 342
+ + GA H+ E ++LQ+HVAT DND+ +PR++QKSG+P+K+I+ARLKGKEGR+
Sbjct: 291 KQAHAEGAPNHICTEFEELLQYHVATYMDNDIASIPRSLQKSGRPIKSIRARLKGKEGRL 350
Query: 343 RGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
RGNLMGKRVDFSARTVIT D N+ + +VGVPRSIA+ +T+PE VTP N+D
Sbjct: 351 RGNLMGKRVDFSARTVITGDANISLHEVGVPRSIARTLTYPETVTPHNID 400
>gi|326480447|gb|EGE04457.1| DNA-directed RNA polymerase II largest subunit [Trichophyton
equinum CBS 127.97]
Length = 1712
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 183/409 (44%), Positives = 246/409 (60%), Gaps = 39/409 (9%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKA LR +K++QFG+LSP+EI+RMSV +++PETM+ R P+ GL DPR G IDR+
Sbjct: 9 SKAQLRTIKEIQFGLLSPEEIKRMSVCH--VEYPETMDDQRQRPREKGLNDPRLGTIDRN 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TC + +CPGHFGHI+L+ PVFH+GF+TK K+L VC C K+ + S K D
Sbjct: 67 WRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQKYLD 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKK--QGHGGCGRY 181
L+ + +R A I+ L K ICE + +DP + ++ K QGHGGCG
Sbjct: 127 A-LRFRDPKKRFDA-IWRLSKDILICEA------DPPEEDDPFAKESSKPVQGHGGCGNV 178
Query: 182 QPNIRRSGLDLTAEWKHV--------NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNI 233
QP +R+ G+ L WK NE Q +K +T + L + + ++
Sbjct: 179 QPQVRKEGITLMGTWKPSKMRDMMDDNEIQQPEKKQITPQMALTIFRNIS------EEDV 232
Query: 234 RRSGLD---LTAEWKHVNEDSQEKKIPLT-----GKGVLL---DDLTHKLADIIKCNNEL 282
R GL EW + G G DDLT+KLA+II+ N +
Sbjct: 233 RLMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGTGQRGEDDLTYKLAEIIRANQNV 292
Query: 283 IRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRI 342
R E G+ HV+ E +LQ+HVAT DND+ G+P+AMQKS +P+KAI+ RLKGKEGR+
Sbjct: 293 TRCEQEGSPEHVVREFESLLQYHVATYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRL 352
Query: 343 RGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
R NLMGKRVDFSARTVIT DPNL +D+VGVP SIAQ +T+PE+VTP+N+
Sbjct: 353 RQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNI 401
>gi|322694724|gb|EFY86546.1| DNA-directed RNA polymerase II largest subunit [Metarhizium acridum
CQMa 102]
Length = 1746
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 245/400 (61%), Gaps = 25/400 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG++SP+EI+ MSV I +PETM+ R P+ GGL DP G IDR
Sbjct: 9 SSAPLKTVEEIQFGLMSPEEIKNMSVCH--ILYPETMDESRTKPRDGGLNDPLLGSIDRG 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C+TC +M++CPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L S +
Sbjct: 67 FKCKTCTQSMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDSEF-- 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
V ++ R ++ +CK K CE D + N D E ++ HGGCG QP
Sbjct: 125 VTAINTRDAKLRFNRVWAVCKKKRRCENEDRNEKNDD--EFAPGMKPVAHNHGGCGNVQP 182
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD--- 239
+R++ L L A + ED +++ + V + + HG R + ++R GL+
Sbjct: 183 QVRQAALQLKAAFDVAQEDGPKRR-----ETVPITPEMAHGILRRISEEDLRHMGLNSDY 237
Query: 240 LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAA 291
EW + I + G G + DDLT+KL DII+ N + + G+
Sbjct: 238 ARPEWMILTVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRV
Sbjct: 298 QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 358 DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 397
>gi|452983085|gb|EME82843.1| hypothetical protein MYCFIDRAFT_58269 [Pseudocercospora fijiensis
CIRAD86]
Length = 1753
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 195/408 (47%), Positives = 252/408 (61%), Gaps = 38/408 (9%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG+ SPDEI+ MSV I++ ETM+ R P+ GL DP+ G IDRS
Sbjct: 7 SSAPLKTVQEIQFGLFSPDEIKSMSVCH--IEYAETMDEQRHRPREKGLNDPKLGTIDRS 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKV-R 122
C TC + ECPGHFGHI+LA PVFHVGF+TK KIL VC C KLL S+P R
Sbjct: 65 QMCATCGESQQECPGHFGHIELAVPVFHVGFITKIKKILESVCHNCGKLLEDESNPLFKR 124
Query: 123 DVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDI-NKDGAED--PNSLQNKKQGHGGCG 179
V L+ +RR + LCK K C ++D N D ED N + K+ GHGGCG
Sbjct: 125 AVGLR---DPKRRFEAVTRLCKPKMTC----DLDAKNDDEQEDFGSNPKKEKRPGHGGCG 177
Query: 180 RYQPNIRRSGLDLTAEWK-HVNEDSQ----EKKIPLTGKGVLLNKKQGHGGCGRYQPNIR 234
QP IR+ L L WK NED + EKKI +T + VL + G + ++
Sbjct: 178 NIQPTIRKEQLKLNGTWKLGKNEDGEDNGVEKKI-ITPQEVL----RVFGLIS--EDDLL 230
Query: 235 RSGLDLTA---EWK-----HVNEDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELI 283
R GL++ EW V + I + G + DDLT+KL+DII+ N+ +
Sbjct: 231 RLGLNVDYARPEWMVLTVLPVPPPAVRPSISVDGTSQGMRSEDDLTYKLSDIIRANSNVR 290
Query: 284 RNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIR 343
R E G+ H+ E +LQ+HVAT DND+ G+P+++QKSG+PLKAI+ARLK KEGR+R
Sbjct: 291 RAEQEGSPQHITDEFTSLLQYHVATYMDNDIAGMPKSIQKSGRPLKAIRARLKSKEGRLR 350
Query: 344 GNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
GNLMGKRVDFSARTVIT DPNL +DQVG PRS A+ +TFPE VT +N+
Sbjct: 351 GNLMGKRVDFSARTVITGDPNLDLDQVGCPRSTARILTFPERVTLYNI 398
>gi|12642612|gb|AAK00310.1|AF315820_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Glaucosphaera
vacuolata]
Length = 1746
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 181/403 (44%), Positives = 237/403 (58%), Gaps = 56/403 (13%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A ++ VK VQFG+LSPDEIRRMSV E IKF E G+PK GLMDPR G I R
Sbjct: 10 SSAEVKKVKAVQFGVLSPDEIRRMSVCE--IKFETAFEMGKPKTEGLMDPRLGAIGRDLP 67
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVR--- 122
C+TC + CPGHFGHI+L KP+F++GF T+++LRCVCF+CSKLL+ P PK
Sbjct: 68 CKTCHCDEKNCPGHFGHIELVKPMFNIGFFGMTLRVLRCVCFFCSKLLIDPRDPKADFEV 127
Query: 123 DVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQ 182
VL+ K + R + + +LC IC+ C Q
Sbjct: 128 KKVLRIKNRINRLKK-VQNLCSKVKICKH--------------------------CSNEQ 160
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD--- 239
P + GL AE+K +D+ EKK ++ + VL K +I GL
Sbjct: 161 PKFAKEGLQFRAEFKGSADDTMEKKQIVSAEKVLSIFKHISDD------DIEIMGLSPQH 214
Query: 240 LTAEW----------KHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSG 289
EW H+ S + G+ DDLT+KL DI++ NN L E +G
Sbjct: 215 SRPEWFILTLFPVPPPHIRP-SVMMDASMRGE----DDLTYKLGDIVRNNNALREMERTG 269
Query: 290 AATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGK 349
A H + E I +LQ H+ T+ +ND+PG+PRA QKSG+P+K+I RLKGKEGR+RGNLMGK
Sbjct: 270 APAHRLNEQIHVLQAHIITIMNNDLPGMPRAHQKSGRPIKSISQRLKGKEGRVRGNLMGK 329
Query: 350 RVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
RVDFS RTVI+PDPNLR+DQVGVP++IA N+T+PE+VTPFN++
Sbjct: 330 RVDFSGRTVISPDPNLRLDQVGVPQTIAMNLTYPEVVTPFNVE 372
>gi|301090036|ref|XP_002895253.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
gi|262101000|gb|EEY59052.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
Length = 1858
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 191/418 (45%), Positives = 251/418 (60%), Gaps = 34/418 (8%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTE----------GGIKFPETMEGGRPKLGGLMDP 55
S A LR VK +QFG+ SP+EIR MSVT+ GI PET G P +GG+ DP
Sbjct: 9 SSARLRRVKYLQFGVFSPEEIRAMSVTKQTKVNDRIIPDGISRPETYLNGHPVIGGIGDP 68
Query: 56 RQGVIDRSSRCQTC-------AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFY 108
R G D +RC+TC G + +CPGHFGH++LA+P++H+GF+ + +KILRCVCF+
Sbjct: 69 RMGTCDFRARCKTCDCTYSGSGGKVNDCPGHFGHVELARPMYHMGFIKEVLKILRCVCFH 128
Query: 109 CSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINK--------- 159
CSK+L + R +K K RR +A +Y++C K++CE G+E D+ K
Sbjct: 129 CSKVLSDERDHRFRSA-MKIKNGKRRLKA-VYEICSNKSMCEYGEEADMEKMREDLNIGL 186
Query: 160 DGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNED---SQEKKIPLTGKGVL 216
G D S + K+ GHGGCG QP R+ G+ L E+ ED S ++K L VL
Sbjct: 187 QGGLDDKS-KPKEGGHGGCGGLQPKYRKQGIKLLVEFPEQMEDVPGSGDRKQNLPAAKVL 245
Query: 217 -LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLAD 274
+ K C + R + D L V + + G DDLTH LA
Sbjct: 246 SIFKNISDEDCFALGLDPRWARPDWLVMTLMPVPPPHVRPSVAIDGMARGEDDLTHNLAS 305
Query: 275 IIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKAR 334
I+K N L+ G +H+I + ++LQFH+AT +N+ PGLP+A Q+SGKPLK ++ R
Sbjct: 306 IVKANLALLNCVRKGEPSHIIEQFEQLLQFHLATFLNNEQPGLPQAQQRSGKPLKTLRQR 365
Query: 335 LKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
L+GKEGRIRGNLMGKRVDFSARTVIT DPNL IDQVGVPRSIA N+T PE VTPFNM+
Sbjct: 366 LRGKEGRIRGNLMGKRVDFSARTVITADPNLAIDQVGVPRSIAMNLTVPERVTPFNMN 423
>gi|413915240|gb|AFW21482.1| RNA polymerase II largest subunit [Balansia obtecta]
Length = 1760
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 175/400 (43%), Positives = 245/400 (61%), Gaps = 25/400 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG+LSP+EI+ MSV I +PETM+ R P+ GGL DP G IDR
Sbjct: 9 SSAPLKTVEEIQFGLLSPEEIKNMSVCH--ILYPETMDESRTKPRDGGLNDPLLGSIDRG 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C+TC M++CPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L S P+
Sbjct: 67 FKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + R + ++ +CK K CE D + N + E ++ HGGCG QP
Sbjct: 127 AINTRDAKLRFNR--VWAVCKKKRRCENEDRSEKNDE--EFSPGMKPMVNNHGGCGNVQP 182
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD--- 239
+R++ L L A + V ED +++ + V + + HG R + +++ GL+
Sbjct: 183 QVRQAALQLKAAFDVVQEDGPKRR-----ETVPITPEMAHGILRRISEEDLQHMGLNSDY 237
Query: 240 LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAA 291
EW + I + G + DDLT+KL DII+ N + + G+
Sbjct: 238 ARPEWMIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRV
Sbjct: 298 QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 358 DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 397
>gi|4001824|gb|AAD12604.1| largest subunit of RNA polymerase II [Vairimorpha necatrix]
Length = 1605
Score = 317 bits (812), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 174/384 (45%), Positives = 234/384 (60%), Gaps = 40/384 (10%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
+ +QFG+ SP+EIR+ SV + I PETME G PK GGL+D + G +R+ C +C +
Sbjct: 10 ISSIQFGLFSPEEIRKSSVVQ--IIHPETMENGFPKSGGLIDLKMGTTERAFLCSSCEKD 67
Query: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQS 132
CPGHFGHI+L KP+FHVG++TK KIL CVCFYCS+L +S + K
Sbjct: 68 NFSCPGHFGHIELTKPMFHVGYMTKIKKILECVCFYCSRLKISTKNLK------------ 115
Query: 133 RRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDL 192
+ F++++ K K++CEG + + G GCG QP I++ G+ L
Sbjct: 116 -KDLNFVWNISKTKSVCEG-----------------EIGENGFTGCGNKQPVIKKEGMSL 157
Query: 193 TAEWKHVNEDSQEKKIPLTGKGV--LLNKKQGHGGC--GRYQPNIRRSGLDLTAEWKHVN 248
A K E+ + K+ L G+ V +L K G Q + L LT V
Sbjct: 158 IAFMK--GEEESDGKVILNGERVHNILKKIVNEDAVFLGFDQKFTKPEWLILTVLL--VP 213
Query: 249 EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVAT 308
S I + G DDLTHKLADI+K N L + E GA HV+ + ++LQFH+AT
Sbjct: 214 PPSVRPSIVMEGMLRAEDDLTHKLADIVKANTYLKKYELEGAPGHVVRDYEQLLQFHIAT 273
Query: 309 LTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
+ DND+ G P+A+QKSG+PLK+I ARLKGKEGR+RGNLMGKRVDFSAR+VITPDPN+ ++
Sbjct: 274 MIDNDISGQPQALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITPDPNISVE 333
Query: 369 QVGVPRSIAQNMTFPEIVTPFNMD 392
+VGVP IA+ TFPEI+TPFN+D
Sbjct: 334 EVGVPSEIAKIHTFPEIITPFNID 357
>gi|413915246|gb|AFW21485.1| RNA polymerase II largest subunit [Claviceps purpurea]
Length = 1756
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 181/407 (44%), Positives = 245/407 (60%), Gaps = 37/407 (9%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG++SP+EI+ MSV I +PETM+ R P+ GGL DP G IDR
Sbjct: 9 SSAPLKTVEEIQFGLMSPEEIKSMSVCH--ILYPETMDETRTKPRDGGLNDPLLGSIDRG 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C+TC M++CPGHFGHI+LAKPV+H GF+ K KIL VC CSKL V S +
Sbjct: 67 LKCKTCTQTMSDCPGHFGHIELAKPVYHPGFIRKVKKILEMVCHNCSKLRVDASDAEFAS 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKK---QGHGGCGR 180
+ ++R + ++ LCK K CE D D N D D + L KK HGGCG
Sbjct: 127 AINIRDAKARFNR--VWALCKTKTKCENEDRSDKNDD---DFDFLPVKKPVITNHGGCGN 181
Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKK-----IPLTGKGVLLNKKQGHGGCGRYQPNIRR 235
QP +R++ L L A ++ ED ++K P T G+L + ++R
Sbjct: 182 VQPQVRQAALQLKAVFELEQEDGPKRKETTPITPETALGILKRISEQ---------DLRH 232
Query: 236 SGLDLTA---EWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIR 284
GL+ EW + I + G + DDLT+KL DII+ N + +
Sbjct: 233 MGLNADYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQ 292
Query: 285 NESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRG 344
G+ H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RG
Sbjct: 293 AIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRG 352
Query: 345 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
NLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 353 NLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 399
>gi|413915242|gb|AFW21483.1| RNA polymerase II largest subunit [Claviceps fusiformis]
Length = 1761
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 174/400 (43%), Positives = 244/400 (61%), Gaps = 25/400 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG++SP+EI+ MSV I +PETM+ R P+ GGL DP G IDR
Sbjct: 9 SSAPLKTVEEIQFGLMSPEEIKNMSVCH--ILYPETMDETRTKPRDGGLNDPLLGSIDRG 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C+TC M++CPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L S P+
Sbjct: 67 FKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + R + ++ +CK K CE D + N + E ++ HGGCG QP
Sbjct: 127 AINTRDAKLRFNR--VWTVCKKKRRCENEDRTEKNDE--EFAPGMKPVVNNHGGCGNVQP 182
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD--- 239
+R++ L L A + ED +++ + V + + HG R + ++R GL+
Sbjct: 183 QVRQAALQLKAAFDVAQEDGPKRR-----ETVPITPEMAHGILKRISEEDLRHMGLNSDY 237
Query: 240 LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAA 291
EW + I + G + DDLT+KL DII+ N + + G+
Sbjct: 238 ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRV
Sbjct: 298 QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 358 DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 397
>gi|9955855|dbj|BAB12227.1| RNA polymerase II largest subunit [Aspergillus oryzae]
gi|83767526|dbj|BAE57665.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867452|gb|EIT76698.1| RNA polymerase II, large subunit [Aspergillus oryzae 3.042]
Length = 1748
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 178/407 (43%), Positives = 241/407 (59%), Gaps = 34/407 (8%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKAPLR +K++QFG+ SP+EI+RMSV +++PETM+ R P+ GL DPR G IDR
Sbjct: 9 SKAPLRTIKEIQFGLFSPEEIKRMSVVH--VEYPETMDEQRQRPRTKGLNDPRLGTIDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
C+TC ECPGHFGHI+LA PVFH+GF+TK K+L VC C K+ + S K +
Sbjct: 67 WNCETCEEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKANTSDSKFLE 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L+ + +RR I+ L K ICE D ++ A++ + + HGGCG QP
Sbjct: 127 A-LRMR-DPKRRFDHIWRLSKDITICEADPPPDEDEPYAKESS---KPTRMHGGCGNAQP 181
Query: 184 NIRRSGLDLTAEWK-------HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRS 236
IR+ G+ L WK ++ EKK + + + H ++R
Sbjct: 182 TIRKEGITLVGTWKPSKSMMDEMDMQQPEKKTITPQMALNIFRNISHE-------DVRIM 234
Query: 237 GLD---LTAEWKHVNEDSQEKKIPL--------TGKGVLLDDLTHKLADIIKCNNELIRN 285
GL EW + T DDLT+KLA+I++ N + R
Sbjct: 235 GLSNDYARPEWMVLTVLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIVRANQNVQRC 294
Query: 286 ESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGN 345
E GA HV+ E +LQ+HVAT DND+ G P+AMQKS +P+KAI++RLKGKEGR+R N
Sbjct: 295 EQEGAPEHVVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQN 354
Query: 346 LMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
LMGKRVDFSARTVIT DPNL +D+VGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 355 LMGKRVDFSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNID 401
>gi|119186393|ref|XP_001243803.1| hypothetical protein CIMG_03244 [Coccidioides immitis RS]
gi|392870516|gb|EAS32326.2| DNA-directed RNA polymerase II largest subunit [Coccidioides
immitis RS]
Length = 1750
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 178/411 (43%), Positives = 243/411 (59%), Gaps = 40/411 (9%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKAPLR +K++QFG+LSP+EI+RMSV +++PETM+ R P+ GL DPR G IDR+
Sbjct: 9 SKAPLRTIKEIQFGLLSPEEIKRMSVVH--VEYPETMDEARQRPREKGLNDPRLGTIDRN 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TC + +CPGHFGHI+L+ PVFH+GF+TK K+L VC C K+ + S K D
Sbjct: 67 WRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTSDQKYLD 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L+ + RR A I+ L K ICE D + ++ + + +GHGGCG QP
Sbjct: 127 -ALRFRDPKRRFDA-IWRLSKDVLICEADPPPDDDDPFGKESSKI---VKGHGGCGNAQP 181
Query: 184 NIRRSGLDLTAEWK-----------HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPN 232
IR+ G+ L WK + + +++ P + N + +
Sbjct: 182 QIRKEGISLVGTWKPNKMRDMMDDTDIQQPEKKQITPQMALNIFRNVS---------EED 232
Query: 233 IRRSGLD---LTAEWKHVNEDSQEKKIPL--------TGKGVLLDDLTHKLADIIKCNNE 281
+R GL EW + +G DDLT+KLA+II+ N
Sbjct: 233 VRILGLSNDYARPEWMVITVLPVPPPPVRPSVLVGGSSGGQRGEDDLTYKLAEIIRANQN 292
Query: 282 LIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGR 341
+ R E G+ HV+ E +LQ+HVAT DND+ G P+AMQKS +P+KAI+ RLKGKEGR
Sbjct: 293 VTRCEQEGSPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRLKGKEGR 352
Query: 342 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+R NLMGKRVDFSARTVIT DPNL +D+VGVP SIAQ +T+PE+VTP+N++
Sbjct: 353 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNIN 403
>gi|320038943|gb|EFW20878.1| DNA-directed RNA polymerase II largest subunit [Coccidioides
posadasii str. Silveira]
Length = 1750
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 178/411 (43%), Positives = 243/411 (59%), Gaps = 40/411 (9%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKAPLR +K++QFG+LSP+EI+RMSV +++PETM+ R P+ GL DPR G IDR+
Sbjct: 9 SKAPLRTIKEIQFGLLSPEEIKRMSVVH--VEYPETMDEARQRPREKGLNDPRLGTIDRN 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TC + +CPGHFGHI+L+ PVFH+GF+TK K+L VC C K+ + S K D
Sbjct: 67 WRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTSDQKYLD 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L+ + RR A I+ L K ICE D + ++ + + +GHGGCG QP
Sbjct: 127 -ALRFRDPKRRFDA-IWRLSKDVLICEADPPPDDDDPFGKESSKI---VKGHGGCGNAQP 181
Query: 184 NIRRSGLDLTAEWK-----------HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPN 232
IR+ G+ L WK + + +++ P + N + +
Sbjct: 182 QIRKEGISLVGTWKPNKMRDMMDDTDIQQPEKKQITPQMALNIFRNVS---------EED 232
Query: 233 IRRSGLD---LTAEWKHVNEDSQEKKIPL--------TGKGVLLDDLTHKLADIIKCNNE 281
+R GL EW + +G DDLT+KLA+II+ N
Sbjct: 233 VRILGLSNDYARPEWMVITVLPVPPPPVRPSVLVGGSSGGQRGEDDLTYKLAEIIRANQN 292
Query: 282 LIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGR 341
+ R E G+ HV+ E +LQ+HVAT DND+ G P+AMQKS +P+KAI+ RLKGKEGR
Sbjct: 293 VTRCEQEGSPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRLKGKEGR 352
Query: 342 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+R NLMGKRVDFSARTVIT DPNL +D+VGVP SIAQ +T+PE+VTP+N++
Sbjct: 353 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNIN 403
>gi|238487198|ref|XP_002374837.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
gi|317143741|ref|XP_001819667.2| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus oryzae
RIB40]
gi|220699716|gb|EED56055.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
Length = 1744
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 178/407 (43%), Positives = 241/407 (59%), Gaps = 34/407 (8%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKAPLR +K++QFG+ SP+EI+RMSV +++PETM+ R P+ GL DPR G IDR
Sbjct: 9 SKAPLRTIKEIQFGLFSPEEIKRMSVVH--VEYPETMDEQRQRPRTKGLNDPRLGTIDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
C+TC ECPGHFGHI+LA PVFH+GF+TK K+L VC C K+ + S K +
Sbjct: 67 WNCETCEEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKANTSDSKFLE 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L+ + +RR I+ L K ICE D ++ A++ + + HGGCG QP
Sbjct: 127 A-LRMR-DPKRRFDHIWRLSKDITICEADPPPDEDEPYAKESS---KPTRMHGGCGNAQP 181
Query: 184 NIRRSGLDLTAEWK-------HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRS 236
IR+ G+ L WK ++ EKK + + + H ++R
Sbjct: 182 TIRKEGITLVGTWKPSKSMMDEMDMQQPEKKTITPQMALNIFRNISHE-------DVRIM 234
Query: 237 GLD---LTAEWKHVNEDSQEKKIPL--------TGKGVLLDDLTHKLADIIKCNNELIRN 285
GL EW + T DDLT+KLA+I++ N + R
Sbjct: 235 GLSNDYARPEWMVLTVLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIVRANQNVQRC 294
Query: 286 ESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGN 345
E GA HV+ E +LQ+HVAT DND+ G P+AMQKS +P+KAI++RLKGKEGR+R N
Sbjct: 295 EQEGAPEHVVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQN 354
Query: 346 LMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
LMGKRVDFSARTVIT DPNL +D+VGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 355 LMGKRVDFSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNID 401
>gi|303317798|ref|XP_003068901.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240108582|gb|EER26756.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 1746
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 178/411 (43%), Positives = 243/411 (59%), Gaps = 40/411 (9%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKAPLR +K++QFG+LSP+EI+RMSV +++PETM+ R P+ GL DPR G IDR+
Sbjct: 9 SKAPLRTIKEIQFGLLSPEEIKRMSVVH--VEYPETMDEARQRPREKGLNDPRLGTIDRN 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TC + +CPGHFGHI+L+ PVFH+GF+TK K+L VC C K+ + S K D
Sbjct: 67 WRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTSDQKYLD 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L+ + RR A I+ L K ICE D + ++ + + +GHGGCG QP
Sbjct: 127 -ALRFRDPKRRFDA-IWRLSKDVLICEADPPPDDDDPFGKESSKI---VKGHGGCGNAQP 181
Query: 184 NIRRSGLDLTAEWK-----------HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPN 232
IR+ G+ L WK + + +++ P + N + +
Sbjct: 182 QIRKEGISLVGTWKPNKMRDMMDDTDIQQPEKKQITPQMALNIFRNVS---------EED 232
Query: 233 IRRSGLD---LTAEWKHVNEDSQEKKIPL--------TGKGVLLDDLTHKLADIIKCNNE 281
+R GL EW + +G DDLT+KLA+II+ N
Sbjct: 233 VRILGLSNDYARPEWMVITVLPVPPPPVRPSVLVGGSSGGQRGEDDLTYKLAEIIRANQN 292
Query: 282 LIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGR 341
+ R E G+ HV+ E +LQ+HVAT DND+ G P+AMQKS +P+KAI+ RLKGKEGR
Sbjct: 293 VTRCEQEGSPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRLKGKEGR 352
Query: 342 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+R NLMGKRVDFSARTVIT DPNL +D+VGVP SIAQ +T+PE+VTP+N++
Sbjct: 353 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNIN 403
>gi|413915238|gb|AFW21481.1| RNA polymerase II largest subunit [Aciculosporium take]
Length = 1761
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 174/400 (43%), Positives = 244/400 (61%), Gaps = 25/400 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ V+++QFG++SP+EI+ MSV I +PETM+ R P+ GGL DP G IDR
Sbjct: 9 SSAPLKTVEEIQFGLMSPEEIKNMSVCH--ILYPETMDETRTKPRDGGLNDPLLGSIDRG 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C+TC M++CPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L S P+
Sbjct: 67 FKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFAS 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + R + ++ +CK K CE D + N + E ++ HGGCG QP
Sbjct: 127 AIGTRDAKLRFNR--VWAVCKKKRRCENEDRTEKNDE--EFTPGMKPVVNNHGGCGNVQP 182
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD--- 239
+R++ L L A + ED +++ + V + + HG R + ++R GL+
Sbjct: 183 QVRQTALQLKAAFDVAQEDGPKRR-----ETVPITPEMAHGILKRISEEDLRNMGLNSDY 237
Query: 240 LTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAA 291
EW + I + G + DDLT+KL DII+ N + + G+
Sbjct: 238 ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRV
Sbjct: 298 QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 358 DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 397
>gi|302927295|ref|XP_003054466.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735407|gb|EEU48753.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1750
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 177/405 (43%), Positives = 244/405 (60%), Gaps = 25/405 (6%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ S APL+ V+++QFG++SP+EI+ MSV I +PETME + P+ GGL DP G
Sbjct: 4 LIFTHSSAPLKTVEEIQFGLMSPEEIKNMSVCH--ILYPETMEENKTKPRDGGLNDPLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
IDR RC+TC M ECPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L
Sbjct: 62 SIDRQFRCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTRD 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGC 178
P+ + + R + ++++CK K C+ +E KD P +GHGGC
Sbjct: 122 PEFAAAIATRDPKVRFSR--VWEVCKKKRRCD--NEEPKQKDEEFAPGMKLGPVEGHGGC 177
Query: 179 GRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSG 237
G QPN+R++ L L A + V E +++ + + + H R + ++R G
Sbjct: 178 GNVQPNVRQAALQLKAAFDVVEEGGGKRR-----ETTPITPEMAHNILRRITEEDLRDMG 232
Query: 238 LD---LTAEW-----KHVNEDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNE 286
L+ EW V I + G G + DDLT+KL DII+ N + +
Sbjct: 233 LNSDYARPEWMVLTVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAI 292
Query: 287 SSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNL 346
G+ H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RGNL
Sbjct: 293 REGSPAHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNL 352
Query: 347 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
MGKRVDFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 353 MGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 397
>gi|303388581|ref|XP_003072524.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
intestinalis ATCC 50506]
gi|303301665|gb|ADM11164.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
intestinalis ATCC 50506]
Length = 1543
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 181/386 (46%), Positives = 230/386 (59%), Gaps = 44/386 (11%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
+K +QFG+ SP+EIR SV I PE MEGG PK GGL+D R G DR CQ+C G+
Sbjct: 10 IKSIQFGLFSPEEIRNGSV--ALIVHPEVMEGGVPKTGGLIDLRMGTTDRMYLCQSCGGD 67
Query: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQS 132
CPGHFGHI+L KP+FHVG+++K K+L CVCFYCSK+ VS K
Sbjct: 68 NFSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKVS-------------KRGV 114
Query: 133 RRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDL 192
R ++ + K K +CEG L N G GCG QP I++ GL L
Sbjct: 115 RSTLNNVWSMSKSKLVCEG--------------EILDN---GKSGCGNRQPVIKKEGLTL 157
Query: 193 TAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----H 246
A K E+S E K+ L G+ V + KK C +++ S EW
Sbjct: 158 VAFMK--GEESNEGKVMLNGERVYSIFKKISDEDCVYMGFDLKYS----RPEWMILTVLL 211
Query: 247 VNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHV 306
V + I + G DDLTHKLADIIK N L + E GA H++ + ++LQFHV
Sbjct: 212 VPPPAVRPSIVMEGSLRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLLQFHV 271
Query: 307 ATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLR 366
ATL DN++ G P+A+QKSG+PLK++ ARLKGKEGRIRGNLMGKRVDFSARTVITPDPN+
Sbjct: 272 ATLIDNELGGQPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPDPNIS 331
Query: 367 IDQVGVPRSIAQNMTFPEIVTPFNMD 392
+++VGVP +A+ TFPE VT FN+D
Sbjct: 332 LEEVGVPLEVAKIHTFPERVTSFNID 357
>gi|154282795|ref|XP_001542193.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
capsulatus NAm1]
gi|150410373|gb|EDN05761.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
capsulatus NAm1]
Length = 1747
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 183/407 (44%), Positives = 246/407 (60%), Gaps = 34/407 (8%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKA LR +K++QFG+LSP+EI+RMSV +++PETM+ R P+ GL DPR G IDR+
Sbjct: 9 SKAQLRTIKEIQFGLLSPEEIKRMSVVH--VEYPETMDEQRQRPREKGLNDPRLGTIDRN 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TC + +CPGHFGHI+L+ PVFH+GF+TK K+L VC C K+ + + K +
Sbjct: 67 WRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTTDQKYLE 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L+ + RR A I+ L K ICE D ++ A++P+ + HGGCG QP
Sbjct: 127 A-LRFRDPKRRFDA-IWRLSKDVLICEADPSPDDDEPFAKEPS---KPVRSHGGCGNIQP 181
Query: 184 NIRRSGLDLTAEWK-HVNED-------SQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRR 235
IR+ G+ L WK N D Q +K +T + L K + ++R
Sbjct: 182 QIRKEGISLVGTWKPSKNRDMMDDMDVQQPEKRQITPQMALNIFKTIS------EEDVRL 235
Query: 236 SGLD---LTAEWKHVNEDSQEKK-------IPLTGKGVL-LDDLTHKLADIIKCNNELIR 284
GL EW + I +G G DDLT+KLA+I++ N + R
Sbjct: 236 MGLSNDYARPEWMIITVLPVPPPPVRPSVLIGGSGSGQRGEDDLTYKLAEIVRANQNVTR 295
Query: 285 NESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRG 344
E G+ HV+ E +LQ+HVAT DND+ G P+AMQKS +P+KAI+ RLKGKEGR+R
Sbjct: 296 CEQEGSPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRLKGKEGRLRQ 355
Query: 345 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
NLMGKRVDFSARTVIT DPNL +D+VGVP SIAQ +T+PE+VTPFN+
Sbjct: 356 NLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNI 402
>gi|325090959|gb|EGC44269.1| RNA polymerase II largest subunit [Ajellomyces capsulatus H88]
Length = 1747
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 183/407 (44%), Positives = 246/407 (60%), Gaps = 34/407 (8%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKA LR +K++QFG+LSP+EI+RMSV +++PETM+ R P+ GL DPR G IDR+
Sbjct: 9 SKAQLRTIKEIQFGLLSPEEIKRMSVVH--VEYPETMDEQRQRPREKGLNDPRLGTIDRN 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TC + +CPGHFGHI+L+ PVFH+GF+TK K+L VC C K+ + + K +
Sbjct: 67 WRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTTDQKYLE 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L+ + RR A I+ L K ICE D ++ A++P+ + HGGCG QP
Sbjct: 127 A-LRFRDPKRRFDA-IWRLSKDVLICEADPSPDDDEPFAKEPS---KPVRSHGGCGNIQP 181
Query: 184 NIRRSGLDLTAEWK-HVNED-------SQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRR 235
IR+ G+ L WK N D Q +K +T + L K + ++R
Sbjct: 182 QIRKEGISLVGTWKPSKNRDMMDDMDVQQPEKRQITPQMALNIFKTIS------EEDVRL 235
Query: 236 SGLD---LTAEWKHVNEDSQEKK-------IPLTGKGVL-LDDLTHKLADIIKCNNELIR 284
GL EW + I +G G DDLT+KLA+I++ N + R
Sbjct: 236 MGLSNDYARPEWMIITVLPVPPPPVRPSVLIGGSGSGQRGEDDLTYKLAEIVRANQNVTR 295
Query: 285 NESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRG 344
E G+ HV+ E +LQ+HVAT DND+ G P+AMQKS +P+KAI+ RLKGKEGR+R
Sbjct: 296 CEQEGSPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRLKGKEGRLRQ 355
Query: 345 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
NLMGKRVDFSARTVIT DPNL +D+VGVP SIAQ +T+PE+VTPFN+
Sbjct: 356 NLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNI 402
>gi|401825605|ref|XP_003886897.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
50504]
gi|392998054|gb|AFM97916.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
50504]
Length = 1557
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 181/389 (46%), Positives = 232/389 (59%), Gaps = 50/389 (12%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
+K +QFG+ SP+EIR S I PE ME G PK+GGL+D R G DR CQ+C G+
Sbjct: 10 IKSIQFGLFSPEEIRNGSA--ALIVHPEVMESGVPKVGGLIDLRMGTTDRMYLCQSCGGD 67
Query: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQS 132
CPGHFGHI+L KP+FHVG+++K K+L CVCFYCSK+ + PK +G
Sbjct: 68 NFSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKI----PK--------RGAK 115
Query: 133 RRRQAFIYDLCKGKNICEG---GDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSG 189
+ ++ + KGK +CEG GDE GCG QP +++ G
Sbjct: 116 STLNS-VWSMSKGKTVCEGEAVGDE--------------------RSGCGNRQPVVKKEG 154
Query: 190 LDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLDLTAEWK--- 245
L L A K E+S E K+ L G+ V + KK C +++ S EW
Sbjct: 155 LTLVAFMK--GEESNEGKVMLNGERVYSIFKKISDEDCVYMGFDLKYS----RPEWMILT 208
Query: 246 --HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
V S I + G DDLTHKLADIIK N L + E GA H++ + ++LQ
Sbjct: 209 VLLVPPPSVRPSIVMEGSLRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLLQ 268
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
FHVATL DND+ G P+A+QKSG+PLK++ ARLKGKEGRIRGNLMGKRVDFSARTVITPDP
Sbjct: 269 FHVATLIDNDIGGQPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPDP 328
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
NL +++VGVP +A+ TFPE VT FN+D
Sbjct: 329 NLSLEEVGVPLEVAKIHTFPEKVTSFNID 357
>gi|342878262|gb|EGU79617.1| hypothetical protein FOXB_09900 [Fusarium oxysporum Fo5176]
Length = 1751
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 179/407 (43%), Positives = 246/407 (60%), Gaps = 27/407 (6%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ S APL+ V+++QFG++SP+EI+ MSV I +PETME + P+ GGL DP G
Sbjct: 4 LYFTHSSAPLKTVEEIQFGLMSPEEIKNMSVCH--ITYPETMEENKTKPRDGGLNDPLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
IDR RC+TC M ECPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L
Sbjct: 62 SIDRQFRCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADDRD 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGC 178
P+ + + + R + ++++CK K CE D K ++ + +GHGGC
Sbjct: 122 PEFVNAINTRDPKVRFNR--VWEVCKKKRRCEN----DEAKQKDDEFGTKTGPPRGHGGC 175
Query: 179 GRYQPNIRRSGLDLTAEWKHV--NEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRR 235
G QPN+R++ L L A + V +ED Q+ K T + + H R + ++
Sbjct: 176 GNMQPNVRQAALQLKAAFDEVTVDEDGQKSKKKETTP---ITPEMAHSILRRITEDDLVN 232
Query: 236 SGLD---LTAEW-----KHVNEDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIR 284
GL+ EW V I + G G + DDLT+KL DII+ N + +
Sbjct: 233 MGLNSDYARPEWMVLTVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQ 292
Query: 285 NESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRG 344
G+ H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+RG
Sbjct: 293 AIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRG 352
Query: 345 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
NLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N+
Sbjct: 353 NLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNI 399
>gi|212533501|ref|XP_002146907.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces marneffei ATCC 18224]
gi|210072271|gb|EEA26360.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces marneffei ATCC 18224]
Length = 1744
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 183/415 (44%), Positives = 245/415 (59%), Gaps = 48/415 (11%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKAPLR +K++QFG+LSP+EI+R+SV +++PETM+ R P+ G DPR G +DR
Sbjct: 9 SKAPLRTIKEIQFGLLSPEEIKRLSVVH--VEYPETMDEQRMRPRTKGPNDPRLGTLDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
C+TC ECPGH+GHI+LA PV+H+GF+TKT K+L VC C K+ S PK +D
Sbjct: 67 YYCETCEEGQKECPGHYGHIELATPVYHIGFLTKTKKLLETVCHNCGKIKADMSDPKFQD 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKK--QGHGGCGRY 181
L+ + +RR I+ L K NICE I +D EDP S + K +GHGGCG
Sbjct: 127 -ALRIR-DPKRRFDIIWRLSKDVNICEAD---PIPED--EDPFSKEASKPHKGHGGCGNA 179
Query: 182 QPNIRRSGLDLTAEWK--HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD 239
QP IR+ GL L WK N + +P K + + ++R GL
Sbjct: 180 QPTIRKEGLSLVGTWKPNKANMMDDDVDMPQPEKRTITPSMAYNIFRSISHEDVRIMGLS 239
Query: 240 LTAEWKHVNEDSQEKKIPLTGKGVLL----------------------DDLTHKLADIIK 277
N+ ++ + + LT VL+ DDLT KLA+II+
Sbjct: 240 --------NDYARPEWMILT---VLIVPPPVVRPSVVSGKSSSGQRAEDDLTFKLAEIIR 288
Query: 278 CNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKG 337
N L R E GA HV+ E +LQ+HVAT DND+ G P+AM KS +P+KAI+ RLKG
Sbjct: 289 ANQNLQRCEQEGAPEHVVREFEALLQYHVATYMDNDIAGQPKAMTKSNRPVKAIRGRLKG 348
Query: 338 KEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
KEGR+R NLMGKRVDFSARTVI DPNL +++VG PRS A +T+PE+VTP+N++
Sbjct: 349 KEGRLRQNLMGKRVDFSARTVICGDPNLSLEEVGTPRSTAMILTYPEVVTPYNIE 403
>gi|310789907|gb|EFQ25440.1| RNA polymerase Rpb1 [Glomerella graminicola M1.001]
Length = 1753
Score = 313 bits (803), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 180/410 (43%), Positives = 248/410 (60%), Gaps = 34/410 (8%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ S AP++ V+++QFG+++P+EI+ MSV +PETM+ R P+ GGL DP G
Sbjct: 4 LYFTHSSAPIKTVEEIQFGLMAPEEIKNMSVCH--CVYPETMDETRTKPRDGGLNDPLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
IDR +C+TC+ M ECPGHFGHI+LAKPV+H GF+ K K+L VC CSK+L S
Sbjct: 62 SIDRQFKCKTCSQAMGECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADRSD 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQG---H 175
P+ V + R + ++++CK K CE ++ + +D N KQ H
Sbjct: 122 PEFLQAVNTRDPKVRFNR--VWNICKKKTRCEN----EVKEQKPDDGEYGLNMKQAPVNH 175
Query: 176 GGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKK--IPLTGKGVLLNKKQGHGGCGRYQPN- 232
GGCG QP +R L L A+++ ED +KK P+T + H R +
Sbjct: 176 GGCGNIQPRVRHKALQLIAKFEAQGEDGVKKKEEPPIT-------PEMAHNILRRISDDD 228
Query: 233 IRRSGLDLTA---EW-----KHVNEDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNE 281
+R GL+L EW V I + G G L DDLT+KL DII+ N+
Sbjct: 229 LRDMGLNLEYARPEWMIVTVLPVPPPPVRPSISMDGTGQGLRNEDDLTYKLGDIIRANSN 288
Query: 282 LIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGR 341
+ + G+ H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR
Sbjct: 289 VKQAIREGSPAHIAQDFEQLLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGR 348
Query: 342 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
+RGNLMGKRVDFSARTVIT D NL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 349 LRGNLMGKRVDFSARTVITGDANLSLDEVGVPRSIARTLTYPETVTPYNI 398
>gi|348676924|gb|EGZ16741.1| RNA polymerase II large subunit [Phytophthora sojae]
Length = 1852
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 190/418 (45%), Positives = 250/418 (59%), Gaps = 34/418 (8%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTE----------GGIKFPETMEGGRPKLGGLMDP 55
S A LR VK +QFG+ SP+EIR MSVT+ GI PET G P +GG+ DP
Sbjct: 9 SSARLRRVKYLQFGVFSPEEIRAMSVTKQTKVNDRIIPDGISRPETYLNGHPVIGGIGDP 68
Query: 56 RQGVIDRSSRCQTC-------AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFY 108
R G D +RC+TC G + +CPGHFGHI+LA+P++H+GF+ + +KILR VCF+
Sbjct: 69 RMGTCDFRARCKTCDCTYSGSGGKVNDCPGHFGHIELARPMYHMGFIKEVLKILRSVCFH 128
Query: 109 CSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINK--------- 159
CSK+L + R +K K RR +A +Y++C K++CE G+E D+ K
Sbjct: 129 CSKVLSDERDHRFRSA-MKIKNGKRRLKA-VYEICSNKSMCEYGEEADMEKMREDLNIGL 186
Query: 160 DGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNED---SQEKKIPLTGKGVL 216
G D S + K+ GHGGCG QP R+ G+ L E+ ED S ++K L VL
Sbjct: 187 QGGLDDKS-KPKEGGHGGCGGLQPKYRKQGIKLLVEFPEQMEDVPGSGDRKQNLPAAKVL 245
Query: 217 -LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLAD 274
+ K C + R + D L V + + G DDLTH LA
Sbjct: 246 SIFKNISDEDCFALGLDPRWARPDWLVMTLMPVPPPHVRPSVAIDGMARGEDDLTHNLAS 305
Query: 275 IIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKAR 334
I+K N L+ G +H+I + ++LQFH+AT +N+ PGLP+A Q+SGKPLK ++ R
Sbjct: 306 IVKANLALLNCVRKGEPSHIIEQFEQLLQFHLATFLNNEQPGLPQAQQRSGKPLKTLRQR 365
Query: 335 LKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
L+GKEGRIRGNLMGKRVDFSARTVIT DPN+ IDQVGVPRSIA N+T PE VTPFNM+
Sbjct: 366 LRGKEGRIRGNLMGKRVDFSARTVITADPNIAIDQVGVPRSIAMNLTVPERVTPFNMN 423
>gi|336276273|ref|XP_003352890.1| hypothetical protein SMAC_05005 [Sordaria macrospora k-hell]
gi|380093009|emb|CCC09246.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1761
Score = 313 bits (802), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 183/418 (43%), Positives = 252/418 (60%), Gaps = 49/418 (11%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ A S APLR VK++QFG+LSP+EI+ MSV I +PETM+ R P+ GGL DP G
Sbjct: 4 LYFAHSSAPLRTVKEIQFGLLSPEEIKSMSVAH--IVYPETMDETRTKPRDGGLNDPLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVS--- 115
+DR +C+TC NM+ECPGHFGHI+LA+PV+H GF+ + KIL VC CSK+L
Sbjct: 62 SVDRQFKCKTCTENMSECPGHFGHIELARPVYHPGFIKRVKKILEIVCHNCSKVLADRND 121
Query: 116 ---PSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKK 172
+ K+RD + R ++ +CK K C D I K ++ N L + K
Sbjct: 122 KEFAAAMKIRD--------PKVRFNRVWAVCKKKRRC---DNEVIKKSDDDEFNPLADAK 170
Query: 173 ---QGHGGCGRYQPNIRRSGLDLTAEWKHVNED---SQEKKI--PLTGKGVLLNKKQGHG 224
GHGGCG P +R+ L L A++ +E+ ++EKKI P +L N +
Sbjct: 171 GELPGHGGCGNDHPTVRQQALTLYAQFDTKDEEGVKTKEKKIITPEMALTILHNMSES-- 228
Query: 225 GCGRYQPNIRRSGLDLTA---EW-----KHVNEDSQEKKIPLTGKGVLL---DDLTHKLA 273
++ G++++ EW V I + G G L DDLT+KL
Sbjct: 229 -------DMIDIGVNISQARPEWMIVTVLPVPPPPVRPSISMDGTGTGLRNEDDLTYKLG 281
Query: 274 DIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKA 333
DII+ N + + G+ H+I + +LQ+HVAT DND+ G P+A+QKSG+P+KAI+A
Sbjct: 282 DIIRANGNVRQAIQEGSPAHIIHDFEGLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRA 341
Query: 334 RLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RLKGKEGR+RGNLMGKRVDFSARTVIT D N+ +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 342 RLKGKEGRLRGNLMGKRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNI 399
>gi|337263122|gb|AEI69272.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
hellem]
Length = 1478
Score = 313 bits (802), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 180/389 (46%), Positives = 232/389 (59%), Gaps = 50/389 (12%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
+K +QFG+ SP+EIR S I PE ME G PK+GGL+D R G DR CQ+C G+
Sbjct: 10 IKSIQFGLFSPEEIRNGSA--ALIVHPEVMESGVPKVGGLIDLRMGTTDRMYLCQSCGGD 67
Query: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQS 132
CPGHFGHI+L KP+FHVG+++K K+L CVCFYCSK+ + PK +G
Sbjct: 68 NFSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKI----PK--------RGAK 115
Query: 133 RRRQAFIYDLCKGKNICEG---GDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSG 189
+ ++ + KGK +CEG GDE GCG QP +++ G
Sbjct: 116 STLNS-VWSMSKGKAVCEGEVVGDE--------------------RSGCGNRQPVVKKEG 154
Query: 190 LDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLDLTAEWK--- 245
L L A K E+S E K+ L G+ V + KK C +++ S EW
Sbjct: 155 LTLVAFMK--GEESNEGKVMLNGERVYSIFKKISDEDCVYMGFDLKYS----RPEWMILT 208
Query: 246 --HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
V S I + G DDLTHKLADIIK N L + E GA H++ + ++LQ
Sbjct: 209 VLLVPPPSVRPSIVMEGSLRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLLQ 268
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
FHVATL DND+ G P+A+QKSG+PLK++ ARLKGKEGRIRGNLMGKRVDFSARTVITPDP
Sbjct: 269 FHVATLIDNDIGGQPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPDP 328
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
N+ +++VGVP +A+ TFPE VT FN+D
Sbjct: 329 NISLEEVGVPLEVAKIHTFPEKVTSFNID 357
>gi|120561176|gb|ABM26983.1| RNA polymerase II largest subunit [Vairimorpha necatrix]
Length = 1255
Score = 313 bits (802), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 173/384 (45%), Positives = 233/384 (60%), Gaps = 40/384 (10%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
+ +QFG+ SP+EIR+ SV + I PETME G PK GGL+D + G +R+ C +C +
Sbjct: 10 ISSIQFGLFSPEEIRKSSVVQ--IIHPETMENGFPKSGGLIDLKMGTTERAFLCSSCEKD 67
Query: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQS 132
CPGHFGHI+L KP+FHVG++TK KIL CVCFYCS+L +S + K
Sbjct: 68 NFSCPGHFGHIELTKPMFHVGYMTKIKKILECVCFYCSRLKISTKNLK------------ 115
Query: 133 RRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDL 192
+ F++++ K K++CEG + + G GCG QP I++ + L
Sbjct: 116 -KDLNFVWNISKTKSVCEG-----------------EIGENGFTGCGNKQPVIKKELMSL 157
Query: 193 TAEWKHVNEDSQEKKIPLTGKGV--LLNKKQGHGGC--GRYQPNIRRSGLDLTAEWKHVN 248
A K E+ + K+ L G+ V +L K G Q + L LT V
Sbjct: 158 IAFMK--GEEESDGKVILNGERVHNILKKIVNXDAVFLGFDQKFTKPEWLILTVLL--VP 213
Query: 249 EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVAT 308
S I + G DDLTHKLADI+K N L + E GA HV+ + ++LQFH+AT
Sbjct: 214 PPSVRPSIVMEGMLRAEDDLTHKLADIVKANTYLKKYELEGAPGHVVRDYEQLLQFHIAT 273
Query: 309 LTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
+ DND+ G P+A+QKSG+PLK+I ARLKGKEGR+RGNLMGKRVDFSAR+VITPDPN+ ++
Sbjct: 274 MIDNDISGQPQALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITPDPNISVE 333
Query: 369 QVGVPRSIAQNMTFPEIVTPFNMD 392
+VGVP IA+ TFPEI+TPFN+D
Sbjct: 334 EVGVPSEIAKIHTFPEIITPFNID 357
>gi|358370099|dbj|GAA86711.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus
kawachii IFO 4308]
Length = 1747
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 180/410 (43%), Positives = 245/410 (59%), Gaps = 41/410 (10%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKAPLR +K++QFG+ SP+EI+RMSV +++PETM+ R P+ GL DPR G IDR
Sbjct: 9 SKAPLRTIKEIQFGLFSPEEIKRMSVVH--VEYPETMDDQRQRPRTKGLNDPRLGTIDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
C+TC ECPGHFGHI+LA PV+H+GF+TK K+L VC C K+ + S PK +
Sbjct: 67 WNCETCEEGQKECPGHFGHIELATPVYHIGFLTKIKKLLETVCHNCGKIKANTSDPKFLE 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKK--QGHGGCGRY 181
L+ + +RR I+ L K ICE D ++ ++ +N K + HGGCG
Sbjct: 127 A-LRMR-DPKRRFDHIWRLSKDVLICEADPPPDDDEPFSK-----ENSKPVRMHGGCGNA 179
Query: 182 QPNIRRSGLDLTAEWK------HVNEDSQEKKI--PLTGKGVLLNKKQGHGGCGRYQPNI 233
QP IR+ G+ L WK ++ EKK+ P V N Y+ ++
Sbjct: 180 QPQIRKEGITLVGTWKPNKMMDEMDMQQPEKKVITPQVALNVFRNIS--------YE-DV 230
Query: 234 RRSGLD---LTAEWKHVNEDSQEKKIPL--------TGKGVLLDDLTHKLADIIKCNNEL 282
R GL EW + T DDLT+KLA+I++ N +
Sbjct: 231 RIMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIVRANQNV 290
Query: 283 IRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRI 342
R E GA HV+ E +LQ+HVAT DND+ G P+AMQKS +P+KAI++RLKGKEGR+
Sbjct: 291 QRCEQEGAPEHVVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRL 350
Query: 343 RGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
R NLMGKRVDFSARTVIT DPNL +++VGVP+SIA+ +T+PE+VTP+N++
Sbjct: 351 RQNLMGKRVDFSARTVITGDPNLSLEEVGVPKSIARTLTYPEVVTPYNIE 400
>gi|145230824|ref|XP_001389676.1| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus niger CBS
513.88]
gi|134055799|emb|CAK37321.1| unnamed protein product [Aspergillus niger]
Length = 1747
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 180/410 (43%), Positives = 245/410 (59%), Gaps = 41/410 (10%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKAPLR +K++QFG+ SP+EI+RMSV +++PETM+ R P+ GL DPR G IDR
Sbjct: 9 SKAPLRTIKEIQFGLFSPEEIKRMSVVH--VEYPETMDDQRQRPRTKGLNDPRLGTIDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
C+TC ECPGHFGHI+LA PV+H+GF+TK K+L VC C K+ + S PK +
Sbjct: 67 WNCETCEEGQKECPGHFGHIELATPVYHIGFLTKIKKLLETVCHNCGKIKANTSDPKFLE 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKK--QGHGGCGRY 181
L+ + +RR I+ L K ICE D ++ ++ +N K + HGGCG
Sbjct: 127 A-LRMR-DPKRRFDHIWRLSKDVLICEADPPPDDDEPFSK-----ENAKPVRMHGGCGNA 179
Query: 182 QPNIRRSGLDLTAEWK------HVNEDSQEKKI--PLTGKGVLLNKKQGHGGCGRYQPNI 233
QP IR+ G+ L WK ++ EKK+ P V N Y+ ++
Sbjct: 180 QPQIRKEGITLVGTWKPNKMMDEMDMQQPEKKVITPQVALNVFRNIS--------YE-DV 230
Query: 234 RRSGLD---LTAEWKHVNEDSQEKKIPL--------TGKGVLLDDLTHKLADIIKCNNEL 282
R GL EW + T DDLT+KLA+I++ N +
Sbjct: 231 RIMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIVRANQNV 290
Query: 283 IRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRI 342
R E GA HV+ E +LQ+HVAT DND+ G P+AMQKS +P+KAI++RLKGKEGR+
Sbjct: 291 QRCEQEGAPEHVVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRL 350
Query: 343 RGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
R NLMGKRVDFSARTVIT DPNL +++VGVP+SIA+ +T+PE+VTP+N++
Sbjct: 351 RQNLMGKRVDFSARTVITGDPNLSLEEVGVPKSIARTLTYPEVVTPYNIE 400
>gi|350638666|gb|EHA27022.1| DNA-directed RNA polymerase II, largest subunit [Aspergillus niger
ATCC 1015]
Length = 1743
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 180/410 (43%), Positives = 245/410 (59%), Gaps = 41/410 (10%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKAPLR +K++QFG+ SP+EI+RMSV +++PETM+ R P+ GL DPR G IDR
Sbjct: 9 SKAPLRTIKEIQFGLFSPEEIKRMSVVH--VEYPETMDDQRQRPRTKGLNDPRLGTIDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
C+TC ECPGHFGHI+LA PV+H+GF+TK K+L VC C K+ + S PK +
Sbjct: 67 WNCETCEEGQKECPGHFGHIELATPVYHIGFLTKIKKLLETVCHNCGKIKANTSDPKFLE 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKK--QGHGGCGRY 181
L+ + +RR I+ L K ICE D ++ ++ +N K + HGGCG
Sbjct: 127 A-LRMR-DPKRRFDHIWRLSKDVLICEADPPPDDDEPFSK-----ENAKPVRMHGGCGNA 179
Query: 182 QPNIRRSGLDLTAEWK------HVNEDSQEKKI--PLTGKGVLLNKKQGHGGCGRYQPNI 233
QP IR+ G+ L WK ++ EKK+ P V N Y+ ++
Sbjct: 180 QPQIRKEGITLVGTWKPNKMMDEMDMQQPEKKVITPQVALNVFRNIS--------YE-DV 230
Query: 234 RRSGLD---LTAEWKHVNEDSQEKKIPL--------TGKGVLLDDLTHKLADIIKCNNEL 282
R GL EW + T DDLT+KLA+I++ N +
Sbjct: 231 RIMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIVRANQNV 290
Query: 283 IRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRI 342
R E GA HV+ E +LQ+HVAT DND+ G P+AMQKS +P+KAI++RLKGKEGR+
Sbjct: 291 QRCEQEGAPEHVVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRL 350
Query: 343 RGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
R NLMGKRVDFSARTVIT DPNL +++VGVP+SIA+ +T+PE+VTP+N++
Sbjct: 351 RQNLMGKRVDFSARTVITGDPNLSLEEVGVPKSIARTLTYPEVVTPYNIE 400
>gi|85111774|ref|XP_964097.1| DNA-directed RNA polymerase II largest subunit [Neurospora crassa
OR74A]
gi|28925863|gb|EAA34861.1| DNA-directed RNA polymerase II largest subunit [Neurospora crassa
OR74A]
Length = 1752
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 177/412 (42%), Positives = 254/412 (61%), Gaps = 37/412 (8%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ A S APLR +K++QFG+LSP+EI+ MSV I +PETM+ R P+ GGL DP G
Sbjct: 4 LYFAHSSAPLRTIKEIQFGLLSPEEIKGMSVAH--IVYPETMDETRTKPRDGGLNDPLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
+DR +C+TC NM+ECPGHFGHI+LA+PV+H GF+ + K+L VC CSK+L +
Sbjct: 62 SVDRQFKCKTCGENMSECPGHFGHIELARPVYHPGFIKRVKKMLEIVCHNCSKVLADRND 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKK---QGH 175
+ + + R + ++ +CK K CE +E+ + K ++ N L + K GH
Sbjct: 122 KEFAAAMRIRDPKVRFNR--VWAVCKKKRRCE--NEV-VKKSDDDEFNPLADAKGELPGH 176
Query: 176 GGCGRYQPNIRRSGLDLTAEWKHVNED---SQEKKI--PLTGKGVLLNKKQGHGGCGRYQ 230
GGCG P +R+ L L A++ +E+ S+EKKI P +L N +
Sbjct: 177 GGCGNDHPTVRQQALTLYAQFDTKDEEGVKSKEKKIITPEMALNILHNMTES-------- 228
Query: 231 PNIRRSGLDLTA---EWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCN 279
++ G++++ EW + I + G G + DDLT+KL DII+ N
Sbjct: 229 -DMIDIGINISQARPEWMIITVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRAN 287
Query: 280 NELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKE 339
+ + G+ H+I + +LQ+HVAT DND+ G P+A+QKSG+P+KAI+ARLKGKE
Sbjct: 288 GNVRQAIQEGSPAHIINDFENLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKE 347
Query: 340 GRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
GR+RGNLMGKRVDFSARTVIT D N+ +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 348 GRLRGNLMGKRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNI 399
>gi|336463398|gb|EGO51638.1| DNA-directed RNA polymerase II largest subunit [Neurospora
tetrasperma FGSC 2508]
gi|350297387|gb|EGZ78364.1| DNA-directed RNA polymerase II largest subunit [Neurospora
tetrasperma FGSC 2509]
Length = 1761
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 177/412 (42%), Positives = 254/412 (61%), Gaps = 37/412 (8%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ A S APLR +K++QFG+LSP+EI+ MSV I +PETM+ R P+ GGL DP G
Sbjct: 4 LYFAHSSAPLRTIKEIQFGLLSPEEIKGMSVAH--IVYPETMDETRTKPRDGGLNDPLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
+DR +C+TC NM+ECPGHFGHI+LA+PV+H GF+ + K+L VC CSK+L +
Sbjct: 62 SVDRQFKCKTCGENMSECPGHFGHIELARPVYHPGFIKRVKKMLEIVCHNCSKVLADRND 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKK---QGH 175
+ + + R + ++ +CK K CE +E+ + K ++ N L + K GH
Sbjct: 122 KEFAAAMRIRDPKVRFNR--VWAVCKKKRRCE--NEV-VKKSDDDEFNPLADAKGELPGH 176
Query: 176 GGCGRYQPNIRRSGLDLTAEWKHVNED---SQEKKI--PLTGKGVLLNKKQGHGGCGRYQ 230
GGCG P +R+ L L A++ +E+ S+EKKI P +L N +
Sbjct: 177 GGCGNDHPTVRQQALTLYAQFDTKDEEGVKSKEKKIITPDMALNILHNMTES-------- 228
Query: 231 PNIRRSGLDLTA---EWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCN 279
++ G++++ EW + I + G G + DDLT+KL DII+ N
Sbjct: 229 -DMIDIGINISQARPEWMIITVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRAN 287
Query: 280 NELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKE 339
+ + G+ H+I + +LQ+HVAT DND+ G P+A+QKSG+P+KAI+ARLKGKE
Sbjct: 288 GNVRQAIQEGSPAHIINDFENLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKE 347
Query: 340 GRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
GR+RGNLMGKRVDFSARTVIT D N+ +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 348 GRLRGNLMGKRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNI 399
>gi|402086759|gb|EJT81657.1| hypothetical protein GGTG_01635 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 1765
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 181/405 (44%), Positives = 248/405 (61%), Gaps = 28/405 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APL+ ++++QFG+LSP+E + MSV I++PE M+ R P+ GGL DP G +DR
Sbjct: 9 SSAPLKTIEEIQFGVLSPEETKNMSVAH--IQYPEAMDDTRTKPREGGLNDPLLGSVDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C+TC +M+ECPGHFGHI+LAKPV+H GF+ KT KIL VC C KLL + +
Sbjct: 67 FKCKTCNNSMSECPGHFGHIELAKPVYHPGFIKKTKKILEMVCHECGKLLCDKDNDEGFL 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICE------GGDEMDINKDGAEDPNSLQNKKQGHGG 177
++T+ + R A ++ +CK K CE GGD KDG E + Q K HGG
Sbjct: 127 DAIRTR-DPKVRFARVWAMCKDKKFCENETTKKGGD-----KDGFES-SKPQVTKVPHGG 179
Query: 178 CGRYQPNIRRSGLDLTAEWK---HVNEDSQEKKI------PLTGKGVLLN-KKQGHGGCG 227
CG PNIR+ L L A K + E +Q+K+I P T VL ++ G
Sbjct: 180 CGSAHPNIRQKALALFARVKGETNDEETAQKKEIKDKPITPETAHAVLKKISEEDMWNMG 239
Query: 228 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LDDLTHKLADIIKCNNELIRNE 286
+ R L +T + TG G+ DDLT+KL DII+ N + +
Sbjct: 240 LNKDYARPEWLIVTVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAI 299
Query: 287 SSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNL 346
GA H+ E ++LQ+HVAT DND+ +PR++QKSG+P+K+I+ARLKGKEGR+RGNL
Sbjct: 300 QDGAPAHICLEFEELLQYHVATYMDNDIASVPRSLQKSGRPVKSIRARLKGKEGRLRGNL 359
Query: 347 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
MGKRVDFSARTVIT D N+ +D+VGVPRSIA+ +++PE VTP+N+
Sbjct: 360 MGKRVDFSARTVITGDANISLDEVGVPRSIARTLSYPETVTPYNI 404
>gi|261189983|ref|XP_002621402.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis SLH14081]
gi|239591638|gb|EEQ74219.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis SLH14081]
gi|239612830|gb|EEQ89817.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis ER-3]
gi|327351995|gb|EGE80852.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1746
Score = 310 bits (794), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 181/407 (44%), Positives = 242/407 (59%), Gaps = 34/407 (8%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKA LR +K++QFG+LSP+EI+RMSV +++PETM+ R P+ GL DPR G IDR+
Sbjct: 9 SKAQLRTIKEIQFGLLSPEEIKRMSVVH--VEYPETMDEQRQRPREKGLNDPRLGTIDRN 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TC + +CPGHFGHI+L+ PVFH+GF+TK K+L VC C K+ + + K +
Sbjct: 67 WRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTTDQKYLE 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L+ + RR A I+ L K ICE D + ++P+ HGGCG QP
Sbjct: 127 A-LRFRDPKRRFDA-IWRLSKDVLICEADPSPDDDDPFGKEPS---KPVHSHGGCGNIQP 181
Query: 184 NIRRSGLDLTAEWK-HVNED-------SQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRR 235
IR+ G+ L WK N D Q +K +T + L K + ++R
Sbjct: 182 QIRKEGISLVGTWKPSKNRDMMDDMDVQQPEKRQITPQMALNIFKTIS------EEDVRL 235
Query: 236 SGLD---LTAEWKHVNEDSQEKKIPL-------TGKGVL-LDDLTHKLADIIKCNNELIR 284
GL EW + +G G DDLT+KLA+I++ N + R
Sbjct: 236 MGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGSGQRGEDDLTYKLAEIVRANQNVTR 295
Query: 285 NESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRG 344
E G+ HV+ E +LQ+HVAT DND+ G P+AMQKS +P+KAI+ RLKGKEGR+R
Sbjct: 296 CEQEGSPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRLKGKEGRLRQ 355
Query: 345 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
NLMGKRVDFSARTVIT DPNL +D+VGVP SIAQ +T+PE+VTPFN+
Sbjct: 356 NLMGKRVDFSARTVITGDPNLSLDEVGVPLSIAQTLTYPEVVTPFNI 402
>gi|378756428|gb|EHY66452.1| DNA-directed RNA polymerase II subunit RPB1 [Nematocida sp. 1
ERTm2]
Length = 1609
Score = 310 bits (794), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 182/397 (45%), Positives = 245/397 (61%), Gaps = 36/397 (9%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S +R V+ ++FGILSP++I MSV + I+ PETME G PK GGL+D R G +R
Sbjct: 3 SDISIRRVESIEFGILSPEDIIAMSVCK--IEHPETMESGVPKEGGLVDLRLGTSERGFL 60
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH---PKVR 122
C TC C GHFG+I+LAKPVFH+G++ K K+L VCF+CSKL V S PK R
Sbjct: 61 CSTCGHRSDSCVGHFGYIELAKPVFHIGYIGKIKKVLESVCFFCSKLRVEKSSLPSPKPR 120
Query: 123 DVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQ 182
T+ + +RR +I++L K + IC G E+ N+D E+ +L+ GC Q
Sbjct: 121 -----TQKERKRRLNYIWNLAKNRAICMG--EVVSNEDNPEE--TLRT------GCENRQ 165
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA 242
P IR+ GL L A K E+S E K L+ + VL ++ + +I G DL
Sbjct: 166 PTIRKEGLHLLAFQK--GEESSEGKTMLSAEKVLEILRRIP------EEDIEALGFDLEK 217
Query: 243 ---EWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW + I + G DDLTHKLADIIK +N L R E G A H+
Sbjct: 218 ARPEWMVIRILPVPPPQVRPSIVMEGSLRCEDDLTHKLADIIKASNNLKRYEQEGVAGHI 277
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I + ++LQFH+ATL +ND+ G P+++QK+G+PLKAI+ARL+GKEGR+RGNLMGKRVDFS
Sbjct: 278 IRDYEQLLQFHIATLMNNDISGQPQSLQKNGRPLKAIRARLRGKEGRVRGNLMGKRVDFS 337
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
ARTVIT DPN+ +++VGVP IA+ +TFPE VT +N+
Sbjct: 338 ARTVITADPNISMNEVGVPEEIAKMLTFPERVTEYNI 374
>gi|242778248|ref|XP_002479200.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722819|gb|EED22237.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
Length = 1755
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 183/415 (44%), Positives = 242/415 (58%), Gaps = 48/415 (11%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKAPLR +K++QFG+ SP+EI+R+SV +++PETM+ R P+ G DPR G +DR
Sbjct: 9 SKAPLRTIKEIQFGLFSPEEIKRLSVVH--VEYPETMDEQRMRPRTKGPNDPRLGTLDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
C+TC ECPGHFGHI+LA PVFH+GF+TKT K+L VC C K+ S PK +D
Sbjct: 67 YYCETCEEGQKECPGHFGHIELATPVFHIGFLTKTKKLLETVCHNCGKIKADMSDPKFQD 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKK--QGHGGCGRY 181
L+ + +RR I+ L K ICE + +D EDP S + K +GHGGCG
Sbjct: 127 -ALRIR-DPKRRFDIIWRLSKDVAICEAD---PLPED--EDPFSKEGSKPHKGHGGCGNA 179
Query: 182 QPNIRRSGLDLTAEWK--HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD 239
QP IR+ GL L WK N + IP K + + ++R GL
Sbjct: 180 QPTIRKEGLSLVGTWKPNKANMMEDDIDIPQPEKRTITPAMAYNIFRSISHEDVRIMGLS 239
Query: 240 LTAEWKHVNEDSQEKKIPLTGKGVLL----------------------DDLTHKLADIIK 277
N+ ++ + + LT VL+ DDLT KLA+II+
Sbjct: 240 --------NDYARPEWMILT---VLIVPPPVVRPSVVSGKSSSGQRAEDDLTFKLAEIIR 288
Query: 278 CNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKG 337
N L R E GA HV+ E +LQ+HVAT DND+ G P+AM KS +P+KAI+ RLKG
Sbjct: 289 ANQNLQRCEQEGAPEHVVREFEALLQYHVATYMDNDIAGQPKAMTKSNRPVKAIRGRLKG 348
Query: 338 KEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
KEGR+R NLMGKRVDFSARTVI DPNL + +VG PRS A +T+PE+VTP+N++
Sbjct: 349 KEGRLRQNLMGKRVDFSARTVICGDPNLSLFEVGTPRSSAMILTYPEVVTPYNIE 403
>gi|320586791|gb|EFW99454.1| DNA-directed RNA polymerase 2 largest subunit [Grosmannia clavigera
kw1407]
Length = 1745
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 176/411 (42%), Positives = 251/411 (61%), Gaps = 35/411 (8%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQG 58
+ A S APL+ ++++QF ++SP+EI+ +SV I +PE M+ +P+ GG+ DP G
Sbjct: 4 LYFAHSSAPLKTIEEIQFSMMSPEEIKNLSVAH--IVYPEAMDETKTKPRDGGVNDPLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
+DR +C+TC NM+ECPGHFGHI+LAKPV+H GF+ KT K+L VC CS +L S
Sbjct: 62 SVDRQFKCKTCTENMSECPGHFGHIELAKPVYHPGFIKKTKKVLEIVCHNCSMVLADRSD 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQ---GH 175
P+ V ++R ++ +++ CK K CE ++ DPN + KQ H
Sbjct: 122 PEFVAAVNTRDPKARFQR--VWECCKKKRRCE---NEAKAEEEEFDPNPSKIAKQQPHNH 176
Query: 176 GGCGRYQPNIRRSGLDLTAEWKHV----NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQP 231
GGCG QP +R++GL L W H +E + K+ L V LN +
Sbjct: 177 GGCGNMQPAVRQTGLQL---WSHFEVERDEGGKTKEKKLLTAEVALNILRRISTA----- 228
Query: 232 NIRRSGLDLTA---EW-----KHVNEDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNN 280
+IR GL++ EW V I + G G + DDLT KL DII+ NN
Sbjct: 229 DIRDMGLNVDYARPEWMVLTVLPVPPPPVRPSISMDGTGTGMRNEDDLTFKLGDIIRANN 288
Query: 281 ELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEG 340
+ + + G+ H+ ++ ++LQ+HVAT DND+ +PRA+QKSG+P+K+I+ARLKGKEG
Sbjct: 289 NVRQAINEGSPAHISSDFEQLLQYHVATYMDNDIAAIPRALQKSGRPVKSIRARLKGKEG 348
Query: 341 RIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
R+RGNLMGKRVDFSARTVIT D N+ +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 349 RLRGNLMGKRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNI 399
>gi|408388091|gb|EKJ67784.1| hypothetical protein FPSE_12056 [Fusarium pseudograminearum CS3096]
Length = 1758
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 180/411 (43%), Positives = 245/411 (59%), Gaps = 32/411 (7%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ S APL+ V+++QFG++SP+EI+ MSV I +PETM+ + P+ GGL D G
Sbjct: 4 LYFTHSSAPLKTVEEIQFGLMSPEEIKNMSVCH--IVYPETMDENKTKPRDGGLNDLLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
IDRS RC+TC M ECPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L
Sbjct: 62 SIDRSFRCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADSRD 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGC 178
P+ + + R + +++ CK K CE + KD +GHGGC
Sbjct: 122 PEFAAAINTRDPKVRFHR--VWEACKKKKRCENDEPK--QKDDEFAATLKTGPMEGHGGC 177
Query: 179 GRYQPNIRRSGLDLTAEWK-HVNEDSQEKK----IPLTGKGVLLNKKQGHGGCGRY-QPN 232
G QP +R+ L L A ++ V+ED Q+ K IP+T + HG R + +
Sbjct: 178 GNVQPAVRQGALQLKAAFEVTVDEDGQKTKKKETIPIT-------PETAHGILRRISEED 230
Query: 233 IRRSGLD---LTAEW-----KHVNEDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNE 281
+ GL+ EW V I + G G + DDLT+KL DII+ N
Sbjct: 231 LVNMGLNSDYARPEWMVLTVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGN 290
Query: 282 LIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGR 341
+ + G+ H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR
Sbjct: 291 VKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGR 350
Query: 342 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N++
Sbjct: 351 LRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIE 401
>gi|387596460|gb|EIJ94081.1| DNA-directed RNA polymerase II subunit RPB1 [Nematocida parisii
ERTm1]
Length = 1612
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 180/398 (45%), Positives = 244/398 (61%), Gaps = 36/398 (9%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S +R V+ ++FGILSP++I MSV + I+ PETME G PK GGL+D R G +R
Sbjct: 3 SDISIRRVESIEFGILSPEDIIAMSVCK--IEHPETMESGVPKEGGLVDLRLGTSERGFL 60
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPS---HPKVR 122
C TC C GHFG+I+LAKPVFH+G++ K K+L VCF+CSKL V S PK R
Sbjct: 61 CSTCGHRSDSCVGHFGYIELAKPVFHIGYIGKIKKVLESVCFFCSKLRVEKSILHSPKPR 120
Query: 123 DVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQ 182
T+ + +RR +I++L K + +C G E+ ++D E+ + GC Q
Sbjct: 121 -----TQKERKRRLNYIWNLAKNRAVCMG--ELVESEDNPEE--------KQRTGCENRQ 165
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA 242
P IR+ GL L A K E+S E K L+ + VL ++ + +I G DL
Sbjct: 166 PTIRKEGLHLLAFQK--GEESSEGKTMLSAEKVLEILRRIP------EDDIEALGFDLEK 217
Query: 243 ---EWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW + I + G DDLTHKLADIIK +N L R E G A H+
Sbjct: 218 ARPEWMIIRVLPVPPPQVRPSIVMEGSLRCEDDLTHKLADIIKASNNLKRYEQEGVAGHI 277
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I + ++LQFH+ATL +ND+ G P+++QK+G+PLKAI+ARL+GKEGR+RGNLMGKRVDFS
Sbjct: 278 IRDYEQLLQFHIATLMNNDISGQPQSLQKNGRPLKAIRARLRGKEGRVRGNLMGKRVDFS 337
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVIT DPN+ +++VGVP IA+ +TFPE VT +N+D
Sbjct: 338 ARTVITADPNISMNEVGVPEEIARMLTFPERVTEYNID 375
>gi|387594692|gb|EIJ89716.1| DNA-directed RNA polymerase II subunit RPB1 [Nematocida parisii
ERTm3]
Length = 1612
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 180/398 (45%), Positives = 244/398 (61%), Gaps = 36/398 (9%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S +R V+ ++FGILSP++I MSV + I+ PETME G PK GGL+D R G +R
Sbjct: 3 SDISIRRVESIEFGILSPEDIIAMSVCK--IEHPETMESGVPKEGGLVDLRLGTSERGFL 60
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPS---HPKVR 122
C TC C GHFG+I+LAKPVFH+G++ K K+L VCF+CSKL V S PK R
Sbjct: 61 CSTCGHRSDSCVGHFGYIELAKPVFHIGYIGKIKKVLESVCFFCSKLRVEKSILHSPKPR 120
Query: 123 DVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQ 182
T+ + +RR +I++L K + +C G E+ ++D E+ + GC Q
Sbjct: 121 -----TQKERKRRLNYIWNLAKNRAVCMG--ELVESEDNPEE--------KQRTGCENRQ 165
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA 242
P IR+ GL L A K E+S E K L+ + VL ++ + +I G DL
Sbjct: 166 PTIRKEGLHLLAFQK--GEESSEGKTMLSAEKVLEILRRIP------EDDIEALGFDLEK 217
Query: 243 ---EWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW + I + G DDLTHKLADIIK +N L R E G A H+
Sbjct: 218 ARPEWMIIRVLPVPPPQVRPSIVMEGSLRCEDDLTHKLADIIKASNNLKRYEQEGVAGHI 277
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I + ++LQFH+ATL +ND+ G P+++QK+G+PLKAI+ARL+GKEGR+RGNLMGKRVDFS
Sbjct: 278 IRDYEQLLQFHIATLMNNDISGQPQSLQKNGRPLKAIRARLRGKEGRVRGNLMGKRVDFS 337
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVIT DPN+ +++VGVP IA+ +TFPE VT +N+D
Sbjct: 338 ARTVITADPNISMNEVGVPEEIARMLTFPERVTEYNID 375
>gi|46108068|ref|XP_381092.1| hypothetical protein FG00916.1 [Gibberella zeae PH-1]
Length = 1758
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 180/411 (43%), Positives = 245/411 (59%), Gaps = 32/411 (7%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ S APL+ V+++QFG++SP+EI+ MSV I +PETM+ + P+ GGL D G
Sbjct: 4 LYFTHSSAPLKTVEEIQFGLMSPEEIKNMSVCH--IVYPETMDENKTKPRDGGLNDLLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
IDRS RC+TC M ECPGHFGHI+LAKPV+H GF+ K KIL VC CSK+L
Sbjct: 62 SIDRSFRCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADSRD 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGC 178
P+ + + R + +++ CK K CE + KD +GHGGC
Sbjct: 122 PEFAAAINTRDPKVRFHR--VWEACKKKKRCENDEPK--QKDDEFAATLKTGPLEGHGGC 177
Query: 179 GRYQPNIRRSGLDLTAEWK-HVNEDSQEKK----IPLTGKGVLLNKKQGHGGCGRY-QPN 232
G QP +R+ L L A ++ V+ED Q+ K IP+T + HG R + +
Sbjct: 178 GNVQPAVRQGALQLKAAFEVTVDEDGQKTKKKETIPIT-------PETAHGILRRISEED 230
Query: 233 IRRSGLD---LTAEW-----KHVNEDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNE 281
+ GL+ EW V I + G G + DDLT+KL DII+ N
Sbjct: 231 LVNMGLNSDYARPEWMVLTVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGN 290
Query: 282 LIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGR 341
+ + G+ H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR
Sbjct: 291 VKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGR 350
Query: 342 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T+PE VTP+N++
Sbjct: 351 LRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIE 401
>gi|380488223|emb|CCF37524.1| DNA-directed RNA polymerase II subunit RPB1, partial
[Colletotrichum higginsianum]
Length = 565
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 179/410 (43%), Positives = 248/410 (60%), Gaps = 34/410 (8%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ S AP++ V+++QFG+++P++I+ MSV +PETM+ R P+ GGL DP G
Sbjct: 4 LYFTHSSAPIKTVEEIQFGLMAPEDIKNMSVCH--CVYPETMDETRTKPRDGGLNDPLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
IDR +C+TC+ M ECPGHFGHI+LAKPV+H GF+ K K+L VC CSK+L S
Sbjct: 62 SIDRQFKCKTCSQAMGECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADRSD 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQG---H 175
P+ V + R + ++++CK K CE ++ + +D N KQ H
Sbjct: 122 PEFLQAVNTRDPKVRFNR--VWNICKKKTRCEN----EVKEQKPDDGEYGLNMKQAPVNH 175
Query: 176 GGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKK--IPLTGKGVLLNKKQGHGGCGRYQPN- 232
GGCG QP +R L L A+++ ED +KK P+T + H R +
Sbjct: 176 GGCGNIQPRVRHKALQLIAKFEAQGEDGVKKKEEPPIT-------PEMAHNILRRISDDD 228
Query: 233 IRRSGLDLTA---EW-----KHVNEDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNE 281
+R GL+L EW V I + G G L DDLT+KL DII+ N+
Sbjct: 229 LRDMGLNLEYARPEWMIVTVLPVPPPPVRPSISMDGTGQGLRNEDDLTYKLGDIIRANSN 288
Query: 282 LIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGR 341
+ + G+ H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR
Sbjct: 289 VKQAIREGSPAHIAQDFEQLLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGR 348
Query: 342 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
+RGNLMGKRVDFSARTVIT D NL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 349 LRGNLMGKRVDFSARTVITGDANLSLDEVGVPRSIARTLTYPETVTPYNI 398
>gi|189197231|ref|XP_001934953.1| DNA-directed RNA polymerase II subunit RPB1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187980901|gb|EDU47527.1| DNA-directed RNA polymerase II subunit RPB1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1742
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 180/403 (44%), Positives = 241/403 (59%), Gaps = 31/403 (7%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM--EGGRPKLGGLMDPRQGVID 61
A SK PLR +K++QFG+LSP+EI+ MSV I +PETM + +P+ GL DP+ G ID
Sbjct: 7 AVSKCPLRTIKEIQFGLLSPEEIKAMSVVH--IIYPETMDEQKQKPREQGLNDPKLGTID 64
Query: 62 RSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKV 121
R C TC ++ CPGHFGHI+L PVFHVGFV K K+L VC C + +HP
Sbjct: 65 RMYHCSTCKEDIQVCPGHFGHIELHTPVFHVGFVVKIKKLLETVCHTCGLIKADFNHP-- 122
Query: 122 RDVVLKTKGQ-SRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNK--KQGHGGC 178
D + TK + +++R I+ + + K+ C+ A+ P+S ++K K HGGC
Sbjct: 123 -DWIAATKTKDAKKRFDKIWRMSRTKSTCD-----------ADGPDSGKDKIPKIPHGGC 170
Query: 179 GRYQPN-IRRSGLDLTAEWKHVNE-------DSQEKKIPLTGKGVL-LNKKQGHGGCGRY 229
G QP+ IR+ GL LTA WK + D +E P + + L + G
Sbjct: 171 GSAQPDTIRKDGLKLTATWKQKKKEDDDGSGDRKEVITPKQAQTIFKLMTENTLALLGLN 230
Query: 230 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LDDLTHKLADIIKCNNELIRNESS 288
R + L + TG+G+ DDLT+KL DII+ N + +
Sbjct: 231 ADYARPEWMILDVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANGRVAECQQE 290
Query: 289 GAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMG 348
G+ HV AE ++Q+HVAT DND G+P+AMQKSG+PLK I+ RLKGKEGR+RGNLMG
Sbjct: 291 GSPQHVTAEFEALVQYHVATYMDNDANGVPQAMQKSGRPLKTIRGRLKGKEGRLRGNLMG 350
Query: 349 KRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
KRVDFSARTVIT DPNL +DQVGVPRSIA+ +T+PE+VT FN+
Sbjct: 351 KRVDFSARTVITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNI 393
>gi|260943858|ref|XP_002616227.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
gi|238849876|gb|EEQ39340.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
Length = 1402
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 169/353 (47%), Positives = 220/353 (62%), Gaps = 22/353 (6%)
Query: 46 RPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCV 105
RP+ GGL DPR G IDR+ +CQTC +M ECPGHFGHI+LAKPVFH+GF+ K K+ CV
Sbjct: 7 RPRDGGLNDPRLGSIDRNFKCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCECV 66
Query: 106 CFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDP 165
C +C KLLV ++P + + K + +R A ++++CK K +CE IN++G
Sbjct: 67 CMHCGKLLVDDTNPLMAQAI-KIRDPKKRFNA-VWNVCKTKMVCEADI---INEEG---- 117
Query: 166 NSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKH---VNEDSQEKKIPLTGKGVL-LNKKQ 221
G GGCG QP +RR GL L WK +E Q ++ LT +L + K
Sbjct: 118 ----EVTSGRGGCGHTQPTVRRDGLKLWGTWKQNKSFDESEQPERRLLTPSEILSVFKHI 173
Query: 222 GHGGCGRYQPN---IRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKC 278
C R N R + +T T +G DDLT KLADIIK
Sbjct: 174 SSEDCHRLGFNEDYARPEWMLITVLPVPPPPVRPSIAFNDTARGE--DDLTFKLADIIKA 231
Query: 279 NNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGK 338
N + R E G+ HVI+E +LQFHVAT DND+ G P+A+QK+G+P+K+I+ARLKGK
Sbjct: 232 NINVQRLEMDGSPQHVISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGK 291
Query: 339 EGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
EGR+RGNLMGKRVDFSARTVI+ DPNL +DQVGVP SIA+ +T+PEIVTP+N+
Sbjct: 292 EGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPLSIARTLTYPEIVTPYNI 344
>gi|226295248|gb|EEH50668.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides
brasiliensis Pb18]
Length = 1746
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 175/410 (42%), Positives = 240/410 (58%), Gaps = 40/410 (9%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKA LR +K++QFG+LSP+EI+RMSV +++PETM+ R P+ GL DPR G IDR+
Sbjct: 9 SKAQLRTIKEIQFGLLSPEEIKRMSVVH--VEYPETMDEQRQRPREKGLNDPRLGTIDRN 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TC + +CPGHFGHI+L+ PVFH+GF+TK K+L VC C K+ + + K +
Sbjct: 67 WRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTNDQKYLE 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L+ + RR A I+ L K ICE D + +++ + + HGGCG QP
Sbjct: 127 A-LRFRDPKRRFDA-IWRLSKDVLICEADPTPDDDDPFSKEAS---KPVRSHGGCGNMQP 181
Query: 184 NIRRSGLDLTAEWK-----------HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPN 232
IR+ G+ L WK + + + + P + N + +
Sbjct: 182 QIRKEGISLVGTWKPNKNRDMMDDMDIQQPEKRQITPQMALNIFRNISE---------ED 232
Query: 233 IRRSGLD---LTAEWKHVNEDSQEKKIPL-------TGKGVL-LDDLTHKLADIIKCNNE 281
+R GL EW + +G G DDLT+KLA+I++ N
Sbjct: 233 VRLMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGSGQRGEDDLTYKLAEIVRANQN 292
Query: 282 LIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGR 341
+ R E G+ HV+ E +LQ+HVAT DND+ G P+AMQKS +P+KAI+ RLKGKEGR
Sbjct: 293 VTRCEQEGSPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRLKGKEGR 352
Query: 342 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
+R NLMGKRVDFSARTVIT DPNL +D+VGVP SIAQ +T+PE+VTPFN+
Sbjct: 353 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNI 402
>gi|225677609|gb|EEH15893.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides
brasiliensis Pb03]
Length = 2106
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 175/410 (42%), Positives = 240/410 (58%), Gaps = 40/410 (9%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKA LR +K++QFG+LSP+EI+RMSV +++PETM+ R P+ GL DPR G IDR+
Sbjct: 9 SKAQLRTIKEIQFGLLSPEEIKRMSVVH--VEYPETMDEQRQRPREKGLNDPRLGTIDRN 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TC + +CPGHFGHI+L+ PVFH+GF+TK K+L VC C K+ + + K +
Sbjct: 67 WRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTNDQKYLE 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L+ + RR A I+ L K ICE D + +++ + + HGGCG QP
Sbjct: 127 A-LRFRDPKRRFDA-IWRLSKDVLICEADPTPDDDDPFSKEAS---KPVRSHGGCGNMQP 181
Query: 184 NIRRSGLDLTAEWK-----------HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPN 232
IR+ G+ L WK + + + + P + N + +
Sbjct: 182 QIRKEGISLVGTWKPNKNRDMMDDMDIQQPEKRQITPQMALNIFRNISE---------ED 232
Query: 233 IRRSGLD---LTAEWKHVNEDSQEKKIPL-------TGKGVL-LDDLTHKLADIIKCNNE 281
+R GL EW + +G G DDLT+KLA+I++ N
Sbjct: 233 VRLMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGSGQRGEDDLTYKLAEIVRANQN 292
Query: 282 LIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGR 341
+ R E G+ HV+ E +LQ+HVAT DND+ G P+AMQKS +P+KAI+ RLKGKEGR
Sbjct: 293 VTRCEQEGSPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRLKGKEGR 352
Query: 342 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
+R NLMGKRVDFSARTVIT DPNL +D+VGVP SIAQ +T+PE+VTPFN+
Sbjct: 353 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNI 402
>gi|330931381|ref|XP_003303389.1| hypothetical protein PTT_15561 [Pyrenophora teres f. teres 0-1]
gi|311320680|gb|EFQ88526.1| hypothetical protein PTT_15561 [Pyrenophora teres f. teres 0-1]
Length = 1738
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 180/401 (44%), Positives = 238/401 (59%), Gaps = 27/401 (6%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM--EGGRPKLGGLMDPRQGVID 61
A SK PLR +K++QFG+LSP+EI+ MSV I +PETM + +P+ GL DP+ G ID
Sbjct: 7 AVSKCPLRTIKEIQFGLLSPEEIKAMSVVH--IIYPETMDEQKQKPREQGLNDPKLGTID 64
Query: 62 RSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKV 121
R C TC ++ CPGHFGHI+L PVFHVGFV K K+L VC C + +HP
Sbjct: 65 RMYHCSTCKEDIQVCPGHFGHIELHTPVFHVGFVVKIKKLLETVCHTCGLIKADFNHP-- 122
Query: 122 RDVVLKTKGQ-SRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
D + TK + +++R I+ + + K+ C+ D D KD + K HGGCG
Sbjct: 123 -DWIAATKTKDAKKRFDKIWRMSRTKSTCDA-DGPDAGKD--------KIPKIPHGGCGS 172
Query: 181 YQPN-IRRSGLDLTAEWKHVNE-------DSQEKKIPLTGKGVL-LNKKQGHGGCGRYQP 231
QP+ IR+ GL LTA WK + D +E P + + L + G
Sbjct: 173 AQPDTIRKDGLKLTATWKQKKKEDDDGSGDRKEVITPKQAQTIFKLMTENTLALLGLNAD 232
Query: 232 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LDDLTHKLADIIKCNNELIRNESSGA 290
R + L + TG+G+ DDLT+KL DII+ N + + G+
Sbjct: 233 YARPEWMILDVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANGRVAECQQEGS 292
Query: 291 ATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
HV AE ++Q+HVAT DND G+P+AMQKSG+PLK I+ RLKGKEGR+RGNLMGKR
Sbjct: 293 PQHVTAEFEALVQYHVATYMDNDANGVPQAMQKSGRPLKTIRGRLKGKEGRLRGNLMGKR 352
Query: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
VDFSARTVIT DPNL +DQVGVPRSIA+ +T+PE+VT FN+
Sbjct: 353 VDFSARTVITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNI 393
>gi|396481989|ref|XP_003841371.1| similar to DNA-directed RNA polymerase ii largest subunit
[Leptosphaeria maculans JN3]
gi|312217945|emb|CBX97892.1| similar to DNA-directed RNA polymerase ii largest subunit
[Leptosphaeria maculans JN3]
Length = 1875
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 186/405 (45%), Positives = 241/405 (59%), Gaps = 31/405 (7%)
Query: 2 AMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM--EGGRPKLGGLMDPRQGV 59
A A SK LR +K++QFG+LSP+EI+ MSV I +PETM + +P+ GL DPR G
Sbjct: 143 APAVSKCSLRTIKEIQFGLLSPEEIKAMSVVH--IIYPETMDEQKQKPRDQGLNDPRLGT 200
Query: 60 IDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHP 119
IDR C TC ++ CPGHFGHI+LA PVFHVGFV K KIL VC C +L + P
Sbjct: 201 IDRMYSCATCKEDIQVCPGHFGHIELATPVFHVGFVIKIKKILETVCHNCGLILADFNRP 260
Query: 120 KVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCG 179
+ + +KTK +R + I+ L K + CE AED + + K HGGCG
Sbjct: 261 EWQ-AAIKTKDAKKRFEK-IWRLSKIRTRCE---------QTAEDDDPKKAPKIPHGGCG 309
Query: 180 RYQPN-IRRSGLDLTAEWKHVNEDSQE----KKIPLTGKGVLL-------NKKQGHGGCG 227
P+ IR+ GL LTA +K +D + +K P+T + L N Q G
Sbjct: 310 SDAPDAIRKEGLKLTATYKSKKKDEDDGTGDRKEPITPQLALNIFKLLSDNTLQLLGLNA 369
Query: 228 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LDDLTHKLADIIKCNNELIRNE 286
Y R + LT + TG+G+ DDLT+KL DII+ N +
Sbjct: 370 DYA---RPEWMILTVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANGRVQECI 426
Query: 287 SSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNL 346
G+ HV+ E ++Q+HVAT DND G+P+AMQKSG+PLK I+ RLKGKEGR+RGNL
Sbjct: 427 QEGSPQHVLNEFEALVQYHVATYMDNDANGVPQAMQKSGRPLKTIRGRLKGKEGRLRGNL 486
Query: 347 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
MGKRVDFSARTVIT DPNL +DQVGVPRSIA+ +T+PE+VT FN+
Sbjct: 487 MGKRVDFSARTVITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNI 531
>gi|115492277|ref|XP_001210766.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
NIH2624]
gi|114197626|gb|EAU39326.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
NIH2624]
Length = 1742
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 177/408 (43%), Positives = 242/408 (59%), Gaps = 35/408 (8%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKAPLR +K++QFG+ SP+EI+RMSV +++PETM+ R P+ GL DPR G IDR
Sbjct: 9 SKAPLRTIKEIQFGLFSPEEIKRMSVVH--VEYPETMDEQRQRPRTKGLNDPRLGTIDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSP--SHPKV 121
C+TC ECPGHFGHI+LA PVFH+GF+TK K+L VC C K+ S PK
Sbjct: 67 WNCETCEEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKADSIQSDPKF 126
Query: 122 RDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRY 181
+ L+ + +RR I+ + K IC+ D + +++ + + HGGCG
Sbjct: 127 LEA-LRMR-DPKRRFDHIWRISKDILICQADPPPDDDDPFSKESS---KPVRHHGGCGNS 181
Query: 182 QPNIRRSGLDLTAEWK---HVNEDSQ---EKKIPLTGKGVLLNKKQGHGGCGRYQPNIRR 235
QP IR+ G+ L WK ++ED EKK + + + H ++R
Sbjct: 182 QPTIRKEGITLVGTWKPNKMLDEDDMQQPEKKTITPQMALNVFRNISH-------EDVRI 234
Query: 236 SGLD---LTAEWKHVNEDSQEKKIPL--------TGKGVLLDDLTHKLADIIKCNNELIR 284
GL EW + T DDLT+KLA+I++ N + R
Sbjct: 235 MGLSNDYARPEWMVITVLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIVRANQNVQR 294
Query: 285 NESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRG 344
E GA HV+ E +LQ+HVAT DND+ G P+AMQKS +P+KAI++RLKGKEGR+R
Sbjct: 295 CEQEGAPEHVVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQ 354
Query: 345 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
NLMGKRVDFSARTVIT DPNL +D+VGVP+SIA+ +T+PE+VTP+N++
Sbjct: 355 NLMGKRVDFSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIE 402
>gi|295664232|ref|XP_002792668.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226278782|gb|EEH34348.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1748
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 176/416 (42%), Positives = 239/416 (57%), Gaps = 46/416 (11%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--------RPKLGGLMDPRQ 57
SKA LR +K++QFG+LSP+EI+RMSV +++PETM G RP+ GL DPR
Sbjct: 9 SKAQLRTIKEIQFGLLSPEEIKRMSVVH--VEYPETMVGAPANDEQRQRPREKGLNDPRL 66
Query: 58 GVIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPS 117
G IDR+ RC TC + CPGHFGHI+L+ PVFH+GF+TK K+L VC C K+ + +
Sbjct: 67 GTIDRNWRCATCEEGINGCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTN 126
Query: 118 HPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGG 177
K + L+ + RR A I+ L K ICE D + +++ + + HGG
Sbjct: 127 DQKYLEA-LRFRDPKRRFDA-IWRLSKDVLICEADPTPDDDDPFSKEAS---KPVRSHGG 181
Query: 178 CGRYQPNIRRSGLDLTAEWK-----------HVNEDSQEKKIPLTGKGVLLNKKQGHGGC 226
CG QP IR+ G+ L WK + + + + P + N +
Sbjct: 182 CGNMQPQIRKEGISLVGTWKPNKNRDMMDDMDIQQPEKRQITPQMALNIFRNISEE---- 237
Query: 227 GRYQPNIRRSGLD---LTAEWKHVNEDSQEKKIPL-------TGKGVL-LDDLTHKLADI 275
++R GL EW + +G G DDLT+KLA+I
Sbjct: 238 -----DVRLMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGSGQRGEDDLTYKLAEI 292
Query: 276 IKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARL 335
++ N + R E G+ HV+ E +LQ+HVAT DND+ G P+AMQKS +P+KAI+ RL
Sbjct: 293 VRANQNVTRCEQEGSPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRL 352
Query: 336 KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
KGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVP SIAQ +T+PE+VTPFN+
Sbjct: 353 KGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNI 408
>gi|300706227|ref|XP_002995402.1| hypothetical protein NCER_101719 [Nosema ceranae BRL01]
gi|239604482|gb|EEQ81731.1| hypothetical protein NCER_101719 [Nosema ceranae BRL01]
Length = 1612
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 166/382 (43%), Positives = 230/382 (60%), Gaps = 36/382 (9%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
+ +QFG+ SP+EIR+ SV + + PETME G PK GGL+D + G +R+ C +C +
Sbjct: 10 ITSIQFGLFSPEEIRKASVVQ--VIHPETMENGFPKPGGLIDLKMGTTERAFLCSSCEKD 67
Query: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQS 132
CPGHFGHI+L KP+FHVG+++K KIL CVC+YCSK+ + H K
Sbjct: 68 NFSCPGHFGHIELTKPMFHVGYMSKIKKILECVCYYCSKIKIDKKHLK------------ 115
Query: 133 RRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDL 192
+ F+++ CK K++CEG + + G GCG QP I++ G+ L
Sbjct: 116 -KDLNFVWNSCKTKSVCEG-----------------ELTEAGFSGCGNKQPVIKKEGMGL 157
Query: 193 TAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNED 250
A K E+ + K+ L G+ V + KK + + S D L V
Sbjct: 158 VAFMK--GEEDSDGKVILNGERVHNILKKISDEDSTYLGFDTKYSKPDWLVITVLLVPPP 215
Query: 251 SQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
S I + G DDLTHKLADI+K N L + E GA HVI + ++LQFH+AT+
Sbjct: 216 SVRPSIVMEGMLRAEDDLTHKLADIVKANTYLKKYELEGAPGHVIRDYEQLLQFHIATMI 275
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DND+ G P+A+QKSG+P+K+I ARLKGKEGR+RGNLMGKRVDFSAR+VITPD N+ +++V
Sbjct: 276 DNDLSGQPQALQKSGRPIKSISARLKGKEGRVRGNLMGKRVDFSARSVITPDANISLEEV 335
Query: 371 GVPRSIAQNMTFPEIVTPFNMD 392
GVP IA+ TFPE +TP+N++
Sbjct: 336 GVPLEIAKIHTFPETITPYNIE 357
>gi|3063677|gb|AAC14137.1| RNA polymerase II largest subunit [Dictyostelium discoideum]
Length = 757
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 167/321 (52%), Positives = 206/321 (64%), Gaps = 7/321 (2%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LAKPVFH+GF+ +KILRCVC++CSKLL + R LK + Q R
Sbjct: 1 ECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDTNEHSFRQA-LKIRNQKHR 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
A + D CK K +C G E + D ++ L +K HGGCG P I + L +
Sbjct: 60 LNAVV-DCCKNKKVCAIGGEEEEEHDLSKTDEEL-DKPVKHGGCGNVLPKITKEDLKIIV 117
Query: 195 EWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGR---YQPNIRRSGLDLTAEWKHVNEDS 251
E+K V + S EKK L+ + VL K+ R P+ R+ + A V
Sbjct: 118 EFKDVTDGSIEKKSVLSAERVLNILKRIKDEDSRAMGINPDWARADW-MIATVLPVPPPP 176
Query: 252 QEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
I + DDLTHKLADI+K N EL R E +GA H+IAE I+ LQFHVAT D
Sbjct: 177 VRPSIMMDTSTRGEDDLTHKLADIVKANRELQRQEKNGAPAHIIAEAIQFLQFHVATYVD 236
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
N++PGLP+A Q+SG+PLK+I+ RLKGKEGRIRGNLMGKRVDFSARTVIT DPNL IDQVG
Sbjct: 237 NEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQVG 296
Query: 372 VPRSIAQNMTFPEIVTPFNMD 392
VPRSIA N+T+PE VTPFN+D
Sbjct: 297 VPRSIALNLTYPETVTPFNID 317
>gi|451994492|gb|EMD86962.1| hypothetical protein COCHEDRAFT_1217961 [Cochliobolus
heterostrophus C5]
Length = 1737
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 177/398 (44%), Positives = 236/398 (59%), Gaps = 24/398 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM--EGGRPKLGGLMDPRQGVIDRS 63
SK PLR +K++QFG+LSP+EI+ MSV I +PETM + +P+ GL DP+ G IDR
Sbjct: 9 SKCPLRTIKEIQFGLLSPEEIKAMSVVH--IIYPETMDEQKQKPREQGLNDPKLGTIDRM 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
C TC ++ CPGHFGHI+L PVFHVGFV K K+L VC C + +HP +
Sbjct: 67 YSCATCKEDIQVCPGHFGHIELHTPVFHVGFVVKIKKLLETVCHTCGMIKADFNHPDWQ- 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+TK +++R I+ + + KN+C D+ + G E+ + K HGGCG QP
Sbjct: 126 AAARTK-DAKKRFDKIWRMSRTKNVCV----QDVEESGKEN----KIPKIPHGGCGSRQP 176
Query: 184 N-IRRSGLDLTAEWKHVNEDS-------QEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIR 234
+ IR+ GL LT WK +D +E P + + L G R
Sbjct: 177 DTIRKEGLKLTGTWKQSKKDDDDGQGDRKEVITPKQAQTIFKLLSDNTLALLGLNADYAR 236
Query: 235 RSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATH 293
+ L + TG+G+ DDLT+KL DII+ N + + G+ H
Sbjct: 237 PEWMILDVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANQRVAECQQEGSPQH 296
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
V AE ++Q+HVAT DND G+P+AMQKSG+PLK I+ RLKGKEGR+RGNLMGKRVDF
Sbjct: 297 VTAEFEALVQYHVATYMDNDANGVPQAMQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDF 356
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
SARTVIT DPNL +DQVGVPRSIA+ +T+PE+VT FN+
Sbjct: 357 SARTVITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNI 394
>gi|451846374|gb|EMD59684.1| hypothetical protein COCSADRAFT_164565 [Cochliobolus sativus
ND90Pr]
Length = 1737
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 177/398 (44%), Positives = 236/398 (59%), Gaps = 24/398 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM--EGGRPKLGGLMDPRQGVIDRS 63
SK PLR +K++QFG+LSP+EI+ MSV I +PETM + +P+ GL DP+ G IDR
Sbjct: 9 SKCPLRTIKEIQFGLLSPEEIKAMSVVH--IIYPETMDEQKQKPREQGLNDPKLGTIDRM 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
C TC ++ CPGHFGHI+L PVFHVGFV K K+L VC C + +HP +
Sbjct: 67 YSCATCKEDIQVCPGHFGHIELHTPVFHVGFVVKIKKLLETVCHTCGMIKADFNHPDWQ- 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+TK +++R I+ + + KN+C D+ + G E+ + K HGGCG QP
Sbjct: 126 AAARTK-DAKKRFDKIWRMSRTKNVCV----QDVEESGKEN----KIPKIPHGGCGSRQP 176
Query: 184 N-IRRSGLDLTAEWKHVNEDS-------QEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIR 234
+ IR+ GL LT WK +D +E P + + L G R
Sbjct: 177 DTIRKEGLKLTGTWKQSKKDDDDGQGDRKEVITPKQAQTIFKLLSDNTLALLGLNADYAR 236
Query: 235 RSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATH 293
+ L + TG+G+ DDLT+KL DII+ N + + G+ H
Sbjct: 237 PEWMILDVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANQRVAECQQEGSPQH 296
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
V AE ++Q+HVAT DND G+P+AMQKSG+PLK I+ RLKGKEGR+RGNLMGKRVDF
Sbjct: 297 VTAEFEALVQYHVATYMDNDANGVPQAMQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDF 356
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
SARTVIT DPNL +DQVGVPRSIA+ +T+PE+VT FN+
Sbjct: 357 SARTVITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNI 394
>gi|378729993|gb|EHY56452.1| DNA-directed RNA polymerase II subunit A [Exophiala dermatitidis
NIH/UT8656]
Length = 1762
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 175/402 (43%), Positives = 231/402 (57%), Gaps = 30/402 (7%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
S APLR V+++QFG+ S E R++V E I++PETM+ R P+ G DP G IDR+
Sbjct: 9 SSAPLRTVEEIQFGLFSAKETERLAVIE--IEYPETMDEQRLRPREKGPNDPHLGTIDRN 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+C TC NM+ECPGHFG I LA PV+H GF+ K KIL VC C K+ +
Sbjct: 67 FKCSTCEENMSECPGHFGVIKLATPVYHYGFMGKVKKILETVCLNCGKIKALDNEEFRHA 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRY 181
+ L+ + +RR ++ L K +N+CE D EDP+ HGGCG
Sbjct: 127 ISLRDR---KRRFDAVWRLSKPRNVCEA--------DPPEDPDQPLKGPAPPKHGGCGNM 175
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
QP IRRSGL L A WK + +E P K + + + + GL L
Sbjct: 176 QPEIRRSGLQLWATWKARKGEDEEDTTP--DKKRIFPQDALNTFRTLTDETLEMMGLSLD 233
Query: 242 A---EWKHVNE-----DSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGA 290
EW ++ I + G G DDLT KL DII+ N ++R E G
Sbjct: 234 YARPEWMILSALPVPPPPVRPSISVDGSGQGQRGEDDLTFKLGDIIRANQAVLRTEVDGT 293
Query: 291 ATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
H+ + +LQ+H+AT DN++ GL RA KSG+P+K+I+ARLKGKEGR+R NLMGKR
Sbjct: 294 PDHIKVDLCDLLQYHIATYMDNEIAGLERAQHKSGRPIKSIRARLKGKEGRLRQNLMGKR 353
Query: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTPFN+D
Sbjct: 354 VDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNLD 395
>gi|367052355|ref|XP_003656556.1| hypothetical protein THITE_2121340 [Thielavia terrestris NRRL 8126]
gi|347003821|gb|AEO70220.1| hypothetical protein THITE_2121340 [Thielavia terrestris NRRL 8126]
Length = 1751
Score = 303 bits (777), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 177/404 (43%), Positives = 252/404 (62%), Gaps = 26/404 (6%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ A S AP+R +K++QFG+LSP+EI+ MSV + +PETM+ R P+ GGL DP G
Sbjct: 4 LIFAHSSAPIRTIKEIQFGLLSPEEIKGMSVCH--VLYPETMDETRTKPRDGGLNDPLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
+DR +C+TC NM+ECPGHFGHI+LA+PV+H GF+ +T K+L VC CS++L S
Sbjct: 62 SVDRQFKCKTCTENMSECPGHFGHIELARPVYHPGFIRRTKKLLEIVCHNCSRVLADRSD 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGC 178
P+ + + R ++ ++D+CK K C+ D K+ AED +S GHGGC
Sbjct: 122 PQYAAAMRIRDPKVRFKR--VWDICKSKRRCDN----DPPKN-AEDGDSAGGLLGGHGGC 174
Query: 179 GRYQPNIRRSGLDLTAEWKHVNED---SQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRR 235
G QP IR+ L L ++ +E+ ++EKKI + + ++ NI +
Sbjct: 175 GNIQPVIRQQALTLWGHFETKDEEGAKNKEKKIITPEMALNIFRRMSDQEMVDIGLNISQ 234
Query: 236 SGLDLTAEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNES 287
+ EW + I + G G L DDLT+KL DII+ N + + +
Sbjct: 235 A----RPEWMIITVLPVPPPPVRPSISMDGTGTGLRNEDDLTYKLGDIIRANGNVRQAIA 290
Query: 288 SGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLM 347
G+ H+I + +LQ+HVAT DND+ G P+A+QKSG+P+KAI+ARLKGKEGR+RGNLM
Sbjct: 291 EGSPQHIITDFENLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLM 350
Query: 348 GKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
GKRVDFSARTVIT D N+ +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 351 GKRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNI 394
>gi|452823901|gb|EME30907.1| DNA-directed RNA polymerase II subunit A, partial [Galdieria
sulphuraria]
Length = 741
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 176/397 (44%), Positives = 238/397 (59%), Gaps = 41/397 (10%)
Query: 2 AMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVID 61
A+ S L+ V +QFGILSP+EIRR SV I+ E GRPK GGLMD R G ID
Sbjct: 3 ALTVSSVELKKVSALQFGILSPEEIRRYSVAP--IQREIAFEQGRPKEGGLMDQRLGAID 60
Query: 62 RSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKV 121
R C+TC + +CPGHFGHI+LA+PV++ GF+ T+K+LRC+C+YCSKLL++ +
Sbjct: 61 RDFPCRTCHSSFLDCPGHFGHIELAQPVYNPGFLASTLKVLRCICYYCSKLLINTEDSSI 120
Query: 122 RDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRY 181
SR +Q + I +G + + SL K+ CG
Sbjct: 121 ---------ASRLKQI--------EQIKKGTKRLGLFL-------SLPRLKECRF-CGNA 155
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV------LLNKKQGHGGCGRYQ--PNI 233
QP + R L + AE+ E EK+ +T + + ++ G R Q P+
Sbjct: 156 QPKLLRDALSIVAEFPDPPEGGGEKRQQITAEKAYNILKHMSDEDADILGFSREQSRPDW 215
Query: 234 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATH 293
+ L+ HV + T +G DDLTHKL DI+K NN L R E GA H
Sbjct: 216 MIITI-LSVPPPHVRPSIM---MDATSRGE--DDLTHKLGDIVKANNALKRLEREGAPAH 269
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
+ E +++LQ+HVAT +N++PGLPR++Q+SG+PLK+I RLKGKEGRIRGNLMGKRVDF
Sbjct: 270 ALNEQLQLLQYHVATYMNNEIPGLPRSLQRSGRPLKSISQRLKGKEGRIRGNLMGKRVDF 329
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN 390
SARTVITPDPN+R+D+VGVP+SIA N+T+PE+VTP +
Sbjct: 330 SARTVITPDPNIRLDEVGVPKSIAMNLTYPEVVTPLS 366
>gi|418204396|gb|AFX61752.1| RNA polymerase I largest subunit, partial [Ascosphaera aggregata]
Length = 1697
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 177/402 (44%), Positives = 235/402 (58%), Gaps = 43/402 (10%)
Query: 16 VQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRSSRCQTCAGNM 73
+QFG+LSPDEI++MSV + I++PETM+ R P+ GL DPR G IDR+ +C TC +
Sbjct: 1 IQFGLLSPDEIKKMSVAK--IEYPETMDEQRQRPREAGLNDPRLGTIDRTWKCATCEEGI 58
Query: 74 TECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSR 133
ECPGHFGHI+LA PVFH+GF+TK K+L VC C K+ V+ + PK D L+ + R
Sbjct: 59 NECPGHFGHIELASPVFHIGFLTKIKKLLETVCLNCGKIKVNQNDPKYLD-ALRYRDPKR 117
Query: 134 RRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLT 193
R A I+ L K CE +D + AE + GHGGCG QP IRR GL L
Sbjct: 118 RFDA-IWRLSKDITTCEADPVVDEDDPFAER----VERVPGHGGCGNAQPTIRREGLSLV 172
Query: 194 AEWKHV--------NEDSQEKK----IPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD-- 239
WK ++D Q+ + P + V N G ++R GL
Sbjct: 173 GTWKPRRSRDMLGDDDDMQQPEKRTITPREARAVFKNISSG---------DVRLLGLSNE 223
Query: 240 -LTAEWKHVNEDSQEKKIPLT-----GKGVLL---DDLTHKLADIIKCNNELIRNESSGA 290
EW + G G DDLT+KLA+I++ N + R ++ G
Sbjct: 224 YARPEWMIITVLPVPPPPVRPSVLVGGSGTNQRGEDDLTYKLAEIVRANQNVARCQADGM 283
Query: 291 ATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
H + E +LQ+H+AT DND+ G P+AMQKS +P+KAI+ RLKGKEGR+R NLMGKR
Sbjct: 284 G-HGLHEFEALLQYHIATYMDNDIAGQPKAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKR 342
Query: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VDFSARTVIT DPNL +D+VGVP SIA+ +T+ EIVTP+N++
Sbjct: 343 VDFSARTVITGDPNLSLDEVGVPISIAKTLTYTEIVTPYNIN 384
>gi|222639936|gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japonica Group]
Length = 1526
Score = 300 bits (769), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 164/370 (44%), Positives = 226/370 (61%), Gaps = 22/370 (5%)
Query: 22 SPDEI--RRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGH 79
SP E+ R+MSV + I+ ETME G+PK GGL DPR G IDR +C+TC M ECPGH
Sbjct: 8 SPAEVAKRQMSVVQ--IEHAETMERGKPKPGGLSDPRLGTIDRKIKCETCMAGMAECPGH 65
Query: 80 FGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFI 139
FGH++LAKP+FH+GF+ + I+RCVCF CSK+L K + + ++R ++ I
Sbjct: 66 FGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTKFKQALKIRNPKNRLKR--I 123
Query: 140 YDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEW--- 196
YD CK K +C GGD++D+ + D + GGCG QPNI G+ + AE+
Sbjct: 124 YDACKSKKVCAGGDDLDVQEQQDTD-----EPVKKRGGCGAQQPNITVDGMKMVAEFKAP 178
Query: 197 KHVNEDSQEKKIPLTGKGVL-----LN--KKQGHGGCGRYQPNIRRSGLD-LTAEWKHVN 248
K N+D ++ P+ K +L LN K+ C N + + D + + +
Sbjct: 179 KKKNDDQEQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFARPDWMILQVLPIP 238
Query: 249 EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVAT 308
+ + DDLTH+LA II+ N L R E +GA H+I E ++LQFH+AT
Sbjct: 239 PPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIAT 298
Query: 309 LTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDPN+ ID
Sbjct: 299 YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINID 358
Query: 369 QVGVPRSIAQ 378
++GVP + +
Sbjct: 359 ELGVPWKLVE 368
>gi|255079898|ref|XP_002503529.1| predicted protein [Micromonas sp. RCC299]
gi|226518796|gb|ACO64787.1| predicted protein [Micromonas sp. RCC299]
Length = 1720
Score = 300 bits (768), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 170/396 (42%), Positives = 225/396 (56%), Gaps = 40/396 (10%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A LR VK VQFG+LSPDEIR+MSV E I+ ET E GRPK GGL DPR G +DR+
Sbjct: 10 STAELRRVKAVQFGVLSPDEIRKMSVCE--IETAETYEKGRPKRGGLSDPRMGTMDRAMA 67
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+T N T+ PG+FGH++LAKPVFH GF+ + +LRCV F SKL++ + +
Sbjct: 68 CETDGMNSTDTPGYFGHLELAKPVFHYGFIKNVVSVLRCVGFSSSKLMIDKNEDPKFAQI 127
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
++ K +R + F D CK K IC G QP
Sbjct: 128 MRIKNNKQRLRKFT-DACKTKTICPA--------------------------TGTPQPQY 160
Query: 186 RRSGLDLTAEWKHVNEDS------QEKKIPLTGKGVLLNKKQGHGGC---GRYQPNIRRS 236
R G+ +TAE+K + ED + K++ + + + K C G + S
Sbjct: 161 RLEGMKITAEFKKLEEDDYLPDGGERKQVITPERALNILKNISDEDCRILGFDPEHAHPS 220
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
L A V + DDLT KL +I++ N L R E +GA HV+
Sbjct: 221 WFVLQA--LPVPPHPVRPSVAFDSSTRSEDDLTVKLMEIVRTNKNLQRQEQNGAPQHVVQ 278
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E ++LQ+H+ T DN + G PRA+ +SG+P+K+I RLKGK GRIRGNLMGKRVDFSAR
Sbjct: 279 EFTELLQYHIMTFMDNTVAGQPRALTRSGRPIKSISERLKGKAGRIRGNLMGKRVDFSAR 338
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVITPDPNL +D++GVP SIA NMT+PE VTP+N++
Sbjct: 339 TVITPDPNLMLDELGVPWSIALNMTYPETVTPYNIE 374
>gi|302410002|ref|XP_003002835.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium
albo-atrum VaMs.102]
gi|261358868|gb|EEY21296.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium
albo-atrum VaMs.102]
Length = 1756
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 172/408 (42%), Positives = 243/408 (59%), Gaps = 30/408 (7%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ S AP++ ++++QFG++SP++I+ MSV + +PETM+ R P+ GL DP G
Sbjct: 4 LYFTHSSAPVKTIEEIQFGLMSPEQIKTMSVCH--VIYPETMDETRTKPRDSGLNDPLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
IDR +C+TC M ECPGHFGHI+LAK V+H GF+ K KIL VC C K+L +
Sbjct: 62 SIDRQFKCKTCTQAMGECPGHFGHIELAKGVYHPGFIKKVKKILEIVCLECYKVLGDRND 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQ-GHGG 177
P+ V + R + +++ CK K CE +E+ KDG + L+ + Q H G
Sbjct: 122 PEFEQAVNTRDPKQRFHRVWLH--CKKKKRCE--NELKEEKDGPDSFPELRRQNQVPHDG 177
Query: 178 CGRYQPNIRRSGLDLTAEWKHVNEDSQE--KKIPLTGKGVLLNKKQGHGGCGRYQPN-IR 234
CG + +IR L L + ED + K++P+T + HG R + +R
Sbjct: 178 CGNVKHDIRAKALQLIEKVTSTTEDGVKDVKEVPITAD-------RAHGILRRISDDDLR 230
Query: 235 RSGLDLTA---EWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELI 283
GL+L EW + I + G G + DDLT+KL DII+ N +
Sbjct: 231 DMGLNLDYARPEWMIITVLPVPPPPVRPSISMDGTGQGMRNEDDLTYKLGDIIRANGNVR 290
Query: 284 RNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIR 343
+ + H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+R
Sbjct: 291 QAIREASPAHIARDFEQLLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLR 350
Query: 344 GNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
GNLMGKRVDFSARTVIT D NL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 351 GNLMGKRVDFSARTVITGDANLSLDEVGVPRSIARTLTYPETVTPYNI 398
>gi|346971808|gb|EGY15260.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium dahliae
VdLs.17]
Length = 1755
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 172/408 (42%), Positives = 243/408 (59%), Gaps = 30/408 (7%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ S AP++ ++++QFG++SP++I+ MSV + +PETM+ R P+ GL DP G
Sbjct: 4 LYFTHSSAPVKTIEEIQFGLMSPEQIKTMSVCH--VIYPETMDETRTKPRDSGLNDPLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
IDR +C+TC M ECPGHFGHI+LAK V+H GF+ K KIL VC C K+L +
Sbjct: 62 SIDRQFKCKTCTQAMGECPGHFGHIELAKGVYHPGFIKKVKKILEIVCLECYKVLGDRND 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQ-GHGG 177
P+ V + R + +++ CK K CE +E+ KDG + L+ + Q H G
Sbjct: 122 PEFEQAVNTRDPKQRFHRVWLH--CKKKKRCE--NELKEEKDGPDSFPELRRQNQVPHDG 177
Query: 178 CGRYQPNIRRSGLDLTAEWKHVNEDSQE--KKIPLTGKGVLLNKKQGHGGCGRYQPN-IR 234
CG + +IR L L + ED + K++P+T + HG R + +R
Sbjct: 178 CGNVKHDIRAKALQLIEKVTSTTEDGVKDVKEVPITAD-------RAHGILRRISDDDLR 230
Query: 235 RSGLDLTA---EWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELI 283
GL+L EW + I + G G + DDLT+KL DII+ N +
Sbjct: 231 DMGLNLDYARPEWMIITVLPVPPPPVRPSISMDGTGQGMRNEDDLTYKLGDIIRANGNVR 290
Query: 284 RNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIR 343
+ + H+ + ++LQ+HVAT DND+ G PRA+QKSG+P+KAI+ARLKGKEGR+R
Sbjct: 291 QAIREASPAHIARDFEQLLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLR 350
Query: 344 GNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
GNLMGKRVDFSARTVIT D NL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 351 GNLMGKRVDFSARTVITGDANLSLDEVGVPRSIARTLTYPETVTPYNI 398
>gi|121701053|ref|XP_001268791.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
gi|119396934|gb|EAW07365.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
Length = 1765
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 179/448 (39%), Positives = 233/448 (52%), Gaps = 114/448 (25%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKAPLR VK++QFG+ SP+EI+RMSV +++PETM+ R P+ GL DPR G IDR
Sbjct: 9 SKAPLRTVKEIQFGLFSPEEIKRMSVVH--VEYPETMDEQRMRPRTKGLNDPRLGTIDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
C+TC ECPGHFGHI+LA PVFH+GF+TK K+L VC C K+ + +
Sbjct: 67 WNCETCEEGQKECPGHFGHIELATPVFHIGFLTKVKKLLETVCHNCGKIKADTNQSDSKF 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ +RR I+ L K ICE D ++P S ++ K
Sbjct: 127 LEALRMRDPKRRFDHIWRLSKDVLICEADPPAD-----EDEPFSKESSKP---------- 171
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAE 243
+RR HGGCG QP IR+ G+ L
Sbjct: 172 -VRR-----------------------------------HGGCGNAQPTIRKEGITLVGT 195
Query: 244 WK----HVNEDSQ---EKKI--PLTGKGVLL----------------------------- 265
WK ++ED EKK+ PL V
Sbjct: 196 WKPNKSMMDEDDMQQPEKKVITPLMALNVFRTISQEDVRIMGLSNDYARPEWMIITVLPV 255
Query: 266 ---------------------DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQF 304
DDLT+KLA+II+ N + R E GA HV+ E +LQ+
Sbjct: 256 PPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIIRANQNVQRCEQEGAPEHVVREFESLLQY 315
Query: 305 HVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
HVAT DND+ G P+AMQKS +P+KAI++RLKGKEGR+R NLMGKRVDFSARTVIT DPN
Sbjct: 316 HVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDFSARTVITGDPN 375
Query: 365 LRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
L +D+VGVPRSIA+ +T+PE+VTP+N++
Sbjct: 376 LSLDEVGVPRSIARTLTYPEVVTPYNIE 403
>gi|406603917|emb|CCH44586.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 1688
Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 164/360 (45%), Positives = 220/360 (61%), Gaps = 29/360 (8%)
Query: 43 EGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKIL 102
E +P++GGL DPR G IDR+ +CQTC M ECPGHFGHI+LAKPVFH+GF++K K+
Sbjct: 3 EQNKPRVGGLNDPRLGSIDRNFKCQTCGEGMNECPGHFGHIELAKPVFHIGFISKIKKVC 62
Query: 103 RCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGA 162
CVC +C KLL+ ++ + + + K +R A +++L K K ICE
Sbjct: 63 ECVCMHCGKLLLDETNELFKQAI-RIKDPKKRFNA-VWNLSKTKMICE------------ 108
Query: 163 EDPNSLQNKKQGH----GGCGRYQPNIRRSGLDLTAEW---KHVNEDSQEKKIPLTGKGV 215
PN + G GGCG QP +RR GL L W K + ++ Q ++ LT +
Sbjct: 109 --PNYPVEDESGQSVSRGGCGNSQPTVRRDGLKLWGTWRKGKDLEDNEQPERRLLTASEI 166
Query: 216 L-LNKKQGHGGC---GRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHK 271
L + K C G ++ R L L+ T +G DDLT+K
Sbjct: 167 LTVFKHISPEDCRKLGFHEDYARPEWLILSVLPVPPPPVRPSISFNDTQRGE--DDLTYK 224
Query: 272 LADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAI 331
L+DI+K N + + E G+ HVI E +LQFHVAT DND+ G P+A+QKSG+P+K+I
Sbjct: 225 LSDIMKANINVQKLEMDGSPQHVINEFESLLQFHVATYMDNDIAGQPQALQKSGRPIKSI 284
Query: 332 KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
+ARLKGKEGRIRGNLMGKRVDFSARTVI+ DPNL +DQVGVP+SIA+ +T+PE VTP+N+
Sbjct: 285 RARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPETVTPYNI 344
>gi|418204404|gb|AFX61756.1| RNA polymerase I largest subunit, partial [Ascosphaera variegata]
Length = 1683
Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 173/389 (44%), Positives = 228/389 (58%), Gaps = 23/389 (5%)
Query: 16 VQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRSSRCQTCAGNM 73
+QFG+LSPDEI++MSV + I +PETM+ R P+ GL DP+ G IDR+ +C TC +
Sbjct: 1 IQFGLLSPDEIKKMSVVK--IVYPETMDDQRQRPREEGLNDPKLGTIDRAFKCATCEQGI 58
Query: 74 TECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSR 133
+CPGHFGHI+LA PVFH+GF+TK K+L VC C K+ + PK + L+ + R
Sbjct: 59 MDCPGHFGHIELASPVFHIGFLTKIKKLLETVCINCGKIKADMTDPKYAE-ALRYRDPKR 117
Query: 134 RRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLT 193
R A I+ LCK K +CE + + G P + GHGGCG QP IRR GL L
Sbjct: 118 RFDA-IWRLCKDKLLCETTPIIQEDAFGNAPPQIV----YGHGGCGNPQPQIRREGLTLV 172
Query: 194 AEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNED 250
WK Q P K V+ K+ ++R GL EW +
Sbjct: 173 GTWKPEKSVDQSDSAPPV-KRVITPKEAREVFKNISSGDVRLLGLSNEYARPEWMIITVL 231
Query: 251 SQEKKIPLT-----GKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKML 302
G G DDLT+KLA+I++ N + R + G H + E +L
Sbjct: 232 PVPPPPVRPSVLVGGSGTNQRGEDDLTYKLAEIVRANQNVARCQVDGVG-HGLQEFEALL 290
Query: 303 QFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD 362
Q+HVAT DND+ G P+AMQKS +P+KAI+ RLKGKEGR+R NLMGKRVDFSARTVIT D
Sbjct: 291 QYHVATYMDNDIAGQPKAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGD 350
Query: 363 PNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
PNL +D+VGVP SIA+ +T+ E+VTP+N+
Sbjct: 351 PNLSLDEVGVPVSIARTLTYTEVVTPYNI 379
>gi|169616762|ref|XP_001801796.1| hypothetical protein SNOG_11556 [Phaeosphaeria nodorum SN15]
gi|160703256|gb|EAT81264.2| hypothetical protein SNOG_11556 [Phaeosphaeria nodorum SN15]
Length = 1720
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 183/409 (44%), Positives = 239/409 (58%), Gaps = 32/409 (7%)
Query: 2 AMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGV 59
A SK PLR +K++QFG+LSP+EI+ MSV + I FPETM+ +P+ GL DPR G
Sbjct: 5 APVQSKCPLRTIKEIQFGLLSPEEIKAMSVCQ--IMFPETMDESNTKPREHGLNDPRLGT 62
Query: 60 IDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHV-------GFVTKTIKILRCVCFYCSKL 112
IDR C TC ++ CPGHFGHI+LA PVFHV GFV K KIL VC C +
Sbjct: 63 IDRMYSCATCKEDIQVCPGHFGHIELATPVFHVFMVLTALGFVVKIKKILETVCHNCGLI 122
Query: 113 LVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKK 172
+HP + + +TK +++R I+ + + K CE G EDP + K
Sbjct: 123 TADYNHPDWANAI-RTK-DAKKRFDKIWRMSRTKKNCE-------QDTGEEDPK--KAPK 171
Query: 173 QGHGGCGRYQPN-IRRSGLDLTAEWK-HVNEDSQ---EKKIPLTGKGVL----LNKKQGH 223
HGGCG P+ IR+ G+ LTA +K EDS ++K LT + L L
Sbjct: 172 IPHGGCGNTNPDTIRKEGVKLTATYKPKKGEDSDGQGDRKEVLTPQHALNVFKLLSDNTL 231
Query: 224 GGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LDDLTHKLADIIKCNNEL 282
G R + +T + TG+G+ DDLT+KL DII+ N +
Sbjct: 232 ALLGLNADYARPEWMIMTVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANQRV 291
Query: 283 IRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRI 342
S GA H++ E ++Q+HVAT DND G+P + QKSG+PLK I+ RLKGKEGR+
Sbjct: 292 QECISEGAPQHILNEFEALVQYHVATYMDNDANGIPPSNQKSGRPLKTIRGRLKGKEGRL 351
Query: 343 RGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RGNLMGKRVDFSARTVIT DPNL +DQVGVPRSIA+ +T+PE+VT FN+
Sbjct: 352 RGNLMGKRVDFSARTVITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNI 400
>gi|440467914|gb|ELQ37108.1| DNA-directed RNA polymerase II subunit RPB1 [Magnaporthe oryzae
Y34]
gi|440478660|gb|ELQ59479.1| DNA-directed RNA polymerase II subunit RPB1 [Magnaporthe oryzae
P131]
Length = 1745
Score = 297 bits (760), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 245/412 (59%), Gaps = 47/412 (11%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ A S APL+ ++++QFG+L+P+EI+ MSV +++P+TM+ R P+ GGL DP G
Sbjct: 4 LIFAPSSAPLKTIEEIQFGVLAPEEIKNMSVVH--VQYPDTMDETRTKPREGGLNDPLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVC--FYCSKLLVSP 116
DR +C+TC +M CPGHFGHI+LAKPV+H GF+ KT KIL + L
Sbjct: 62 TTDRQYKCKTCNNDMNNCPGHFGHIELAKPVYHPGFINKTKKILEMNNDEQFAQAL---- 117
Query: 117 SHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN----KK 172
++RD + R A ++ CKGK +CE I G ++ +S+ +K
Sbjct: 118 ---RLRD--------PKARFAMVWKACKGKKVCE------IETGGKDEKDSIDTATGIEK 160
Query: 173 QGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QP 231
HGGCG P+IR+ L L A+ + E+ +K++ K L+ +Q H +
Sbjct: 161 VPHGGCGSTHPDIRKKALQLYAKVEEAREEGMKKEV----KDKLITPEQAHHILKHIPED 216
Query: 232 NIRRSGLD---LTAEW-----KHVNEDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNN 280
++ + GL+ EW V I + G + DDLT+KL DII+ N
Sbjct: 217 DLWKMGLNKDYARPEWLIVTVLPVPPPPVRPSISVDGTSQGMRSEDDLTYKLGDIIRANG 276
Query: 281 ELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEG 340
+ + + GA H+ E ++LQ+HVAT DND+ +PR++QKSG+P+K+I+ARLKGKEG
Sbjct: 277 NVKQAHAEGAPNHICTEFEELLQYHVATYMDNDIASIPRSLQKSGRPIKSIRARLKGKEG 336
Query: 341 RIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
R+RGNLMGKRVDFSARTVIT D N+ + +VGVPRSIA+ +T+PE VTP N+D
Sbjct: 337 RLRGNLMGKRVDFSARTVITGDANISLHEVGVPRSIARTLTYPETVTPHNID 388
>gi|429962270|gb|ELA41814.1| hypothetical protein VICG_01166 [Vittaforma corneae ATCC 50505]
Length = 1569
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 177/388 (45%), Positives = 228/388 (58%), Gaps = 48/388 (12%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
V +QFG+ SP+EIR+ SV I PET+E G PK GL+D R G +RS CQTC
Sbjct: 10 VTSIQFGLFSPEEIRKGSVVH--ILHPETVENGIPKENGLIDLRMGTTERSFLCQTCNST 67
Query: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQS 132
EC GH+GHI+L+KP+FH+G++ K K L CVCFYCSK+ KG
Sbjct: 68 SFECVGHYGHIELSKPMFHIGYLAKIKKTLECVCFYCSKI----------------KGSK 111
Query: 133 RRRQAFIYD---LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSG 189
+ + + D + K K+ICEG D +G GCG QP+IR+ G
Sbjct: 112 KNLRPGLEDCWTVLKSKSICEGED-----------------IPEGKSGCGNRQPSIRKDG 154
Query: 190 LDLTAEWKHVNEDSQ-EKKIPLTGKGV--LLNK--KQGHGGCGRYQPNIRRSGLDLTAEW 244
L+L A K ED E K+ L G+ V +L K + G N R + LT
Sbjct: 155 LNLIAFMK---EDVDGEGKVVLNGERVYNILKKIPTEDSMFLGFDPDNCRPEWMMLTTII 211
Query: 245 KHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQF 304
V + I L G DDLTHKLADI+K N L + E GA +H++ + ++LQF
Sbjct: 212 --VPPPAMRPSIVLNGHLRAEDDLTHKLADIVKANAYLKKYEQEGAPSHIVRDYEQLLQF 269
Query: 305 HVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
H+ATL DND+ G P+A+QK+G+PLK+I ARLKGKEGRIRGNLMGKRVDFSAR+VI+PDP
Sbjct: 270 HLATLVDNDIGGQPQALQKNGRPLKSITARLKGKEGRIRGNLMGKRVDFSARSVISPDPL 329
Query: 365 LRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+ + QVGVP SIA+ TFPE V FN+D
Sbjct: 330 ISVGQVGVPISIAKIHTFPEKVNSFNID 357
>gi|418204398|gb|AFX61753.1| RNA polymerase I largest subunit, partial [Ascosphaera cf. larvis
64254]
Length = 1616
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 172/389 (44%), Positives = 227/389 (58%), Gaps = 23/389 (5%)
Query: 16 VQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRSSRCQTCAGNM 73
+QFG+LSPDEI++MSV + I +PETM+ R P+ GL DP+ G IDR+ +C TC +
Sbjct: 1 IQFGLLSPDEIKKMSVVK--IVYPETMDDQRQRPREEGLNDPKLGTIDRAFKCATCEQGI 58
Query: 74 TECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSR 133
+CPGHFGHI+LA PVFH+GF+TK K+L VC C K+ + K + L+ + R
Sbjct: 59 MDCPGHFGHIELASPVFHIGFLTKIKKLLETVCINCGKIKADMTDSKYAEA-LRYRDPKR 117
Query: 134 RRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLT 193
R A I+ LCK K +CE + + P L GHGGCG QP IRR GL L
Sbjct: 118 RFDA-IWRLCKDKLLCETTPIIQDDPFSNAPPQILY----GHGGCGNPQPQIRREGLTLV 172
Query: 194 AEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNED 250
WK Q + P K V+ K+ ++R GL EW +
Sbjct: 173 GTWKPEKSVDQSESAPPV-KRVITPKEAREVFKNISSGDVRLLGLSNEYARPEWMIITVL 231
Query: 251 SQEKKIPLT-----GKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKML 302
G G DDLT+KLA+I++ N + R + G H + E +L
Sbjct: 232 PVPPPPVRPSVLVGGSGTNQRGEDDLTYKLAEIVRANQNVARCQVDGVG-HGLQEFEALL 290
Query: 303 QFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD 362
Q+HVAT DND+ G P+AMQKS +P+KAI+ RLKGKEGR+R NLMGKRVDFSARTVIT D
Sbjct: 291 QYHVATYMDNDIAGQPKAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGD 350
Query: 363 PNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
PNL +D+VGVP SIA+ +T+ E+VTP+N+
Sbjct: 351 PNLSLDEVGVPVSIARTLTYTEVVTPYNI 379
>gi|418204400|gb|AFX61754.1| RNA polymerase I largest subunit, partial [Ascosphaera larvis]
Length = 1627
Score = 293 bits (750), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 172/389 (44%), Positives = 227/389 (58%), Gaps = 23/389 (5%)
Query: 16 VQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRSSRCQTCAGNM 73
+QFG+LSPDEI++MSV + I +PETM+ R P+ GL DP+ G IDR+ +C TC +
Sbjct: 1 IQFGLLSPDEIKKMSVVK--IVYPETMDDQRQRPREEGLNDPKLGTIDRAFKCATCEQGI 58
Query: 74 TECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSR 133
+CPGHFGHI+LA PVFH+GF+TK K+L VC C K+ + K + L+ + R
Sbjct: 59 MDCPGHFGHIELASPVFHIGFLTKIKKLLETVCINCGKIKADMTDSKYAEA-LRYRDPKR 117
Query: 134 RRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLT 193
R A I+ LCK K +CE + + P L GHGGCG QP IRR GL L
Sbjct: 118 RFDA-IWRLCKDKLLCETTPIIQDDPFSNAPPQILY----GHGGCGNPQPQIRREGLTLV 172
Query: 194 AEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNED 250
WK Q + P K V+ K+ ++R GL EW +
Sbjct: 173 GTWKPEKSVDQSESAPPV-KRVITPKEAREVFKNISSGDVRLLGLSNEYARPEWMIITVL 231
Query: 251 SQEKKIPLT-----GKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKML 302
G G DDLT+KLA+I++ N + R + G H + E +L
Sbjct: 232 PVPPPPVRPSVLVGGSGTNQRGEDDLTYKLAEIVRANQNVARCQVDGVG-HGLQEFEALL 290
Query: 303 QFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD 362
Q+HVAT DND+ G P+AMQKS +P+KAI+ RLKGKEGR+R NLMGKRVDFSARTVIT D
Sbjct: 291 QYHVATYMDNDIAGQPKAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGD 350
Query: 363 PNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
PNL +D+VGVP SIA+ +T+ E+VTP+N+
Sbjct: 351 PNLSLDEVGVPVSIARTLTYTEVVTPYNI 379
>gi|4092885|gb|AAD12605.1| RNA polymerase II largest subunit [Antonospora locustae]
Length = 1553
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 164/382 (42%), Positives = 227/382 (59%), Gaps = 39/382 (10%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
VK +QFG+ SP+EIR SV I++PET+E G PK GL+D R G +R C TC +
Sbjct: 11 VKAIQFGLFSPEEIRASSV--ALIRYPETLENGVPKESGLIDLRMGTTERDYLCATCNQD 68
Query: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQS 132
C GHFGHI+L KP+FHVGF+++ K+L CVCFYCSK+ ++ K + + K +S
Sbjct: 69 NYVCAGHFGHIELVKPMFHVGFISRIKKVLECVCFYCSKVRIN----KNKTTITK---ES 121
Query: 133 RRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDL 192
+ + FI+ +CK K +CE C QP I++ GL L
Sbjct: 122 KHKLNFIWGICKNKMVCED--------------------------CNNRQPVIKKEGLSL 155
Query: 193 TAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNED 250
A K E++ E K+ L G+ V + KK + NI+ S + + V
Sbjct: 156 FAYMK--GEENNEGKVMLNGERVYNIFKKINNEDLEFLGFNIKYSRPEYMILSVLLVAPP 213
Query: 251 SQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
+ I + G DDLT+K +DIIK N L + E GA H+I + +++QFHVATL
Sbjct: 214 AVRPSIVMEGTLRGEDDLTYKYSDIIKSNQNLKKYEEEGAPAHIIRDYEQLVQFHVATLI 273
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DN++ G P+A+QK+G+PLKAI ARLKGKEGR+RGNLMGKRVDFSAR+VIT DPN+ ++++
Sbjct: 274 DNEISGQPQALQKNGRPLKAISARLKGKEGRLRGNLMGKRVDFSARSVITADPNISLEEL 333
Query: 371 GVPRSIAQNMTFPEIVTPFNMD 392
GVP +A TFPE VT FN++
Sbjct: 334 GVPMKVAMIHTFPERVTSFNLN 355
>gi|159467413|ref|XP_001691886.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
reinhardtii]
gi|158278613|gb|EDP04376.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
reinhardtii]
Length = 1789
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 166/402 (41%), Positives = 226/402 (56%), Gaps = 52/402 (12%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S AP+R VK +QF + P EI+ SV E I ET E G+PKLGGL DPR G +DR
Sbjct: 10 SSAPVRQVKAIQFSVWDPAEIKAYSVAE--IVTSETYEKGKPKLGGLSDPRMGTMDRGGI 67
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C T N + PG+FGHI LA+PV+H+GF+ +++LRCV ++ S+LLV PK
Sbjct: 68 CTTDGANANDSPGYFGHIALARPVYHIGFIKTVVRVLRCVSYHTSRLLVDKDDPKYA-YG 126
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
L+ +R + F++ LC+GK + E G QP+
Sbjct: 127 LRISDSEKRLRYFVH-LCQGKKMDEA--------------------------TGNPQPSY 159
Query: 186 RRSGLDLTAEWKHV------NEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGL 238
R GL + AE+ + +D+ E+K LT L + K+ C R G
Sbjct: 160 RLDGLKIMAEFPKLKGDEEQEQDNVERKQELTAARALEIMKRIPAEDC-------RALGF 212
Query: 239 D---LTAEWKHVNE-----DSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGA 290
D +W + + + DDLTHKLA+I++ NN + + +++G
Sbjct: 213 DCRFTRPDWMIIQNMPVPPPPVRPSVMMDSSSRCEDDLTHKLAEILRTNNAIKKQDATGT 272
Query: 291 ATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
HVIAE I LQ+H+ T DN PG+P++ QKSG+P+K+I RLKGK GRIRGNLMGKR
Sbjct: 273 PQHVIAEQIMALQYHITTYFDNSSPGIPKSNQKSGRPIKSISERLKGKSGRIRGNLMGKR 332
Query: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VDFSARTVIT DPN+ ID++GVP SIA N+TFPE VTPFN++
Sbjct: 333 VDFSARTVITGDPNIGIDELGVPWSIALNLTFPETVTPFNIE 374
>gi|256082852|ref|XP_002577666.1| DNA-directed RNA polymerase II largest subunit [Schistosoma
mansoni]
Length = 1785
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 159/344 (46%), Positives = 198/344 (57%), Gaps = 103/344 (29%)
Query: 99 IKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDIN 158
+K+LRCVCFYCSK+LV ++++++ KTKG +RRR +F+Y+ CK ++ C N
Sbjct: 1 MKVLRCVCFYCSKILVDVQSSRIQEILRKTKGDNRRRMSFMYEECKTRSECIS------N 54
Query: 159 KDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLN 218
D + N V L+
Sbjct: 55 DDQVQSEND-----------------------------------------------VSLS 67
Query: 219 KKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-------------- 264
K GCGRYQP RR+GL+LTAEWK VNE+SQE+KI LT + VL
Sbjct: 68 SKVKRSGCGRYQPRFRRNGLELTAEWKKVNEESQERKINLTAERVLEVFKRMSDEDCLSL 127
Query: 265 ------------------------------------LDDLTHKLADIIKCNNELIRNESS 288
DDLTHKLADIIK NN+L R+E +
Sbjct: 128 GFDPRYARPDWMIATVLPVPPLCVRPAVVMYGATRNQDDLTHKLADIIKANNQLRRDEQN 187
Query: 289 GAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMG 348
GAA H+IAE+IKMLQFHV T+ DN++PGLP+A+QKSG+PLK+IK RLKGK GRIRGNLMG
Sbjct: 188 GAAAHIIAEDIKMLQFHVTTMVDNEVPGLPKAIQKSGRPLKSIKQRLKGKAGRIRGNLMG 247
Query: 349 KRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
KRVDFSARTVIT DPNL +DQVGVPR+IAQN+T+PEIVT FN+D
Sbjct: 248 KRVDFSARTVITADPNLNLDQVGVPRTIAQNLTYPEIVTQFNID 291
>gi|358030890|dbj|BAL15354.1| RNA polymerase II largest subunit, partial [Basidiobolus
haptosporus]
Length = 976
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 161/325 (49%), Positives = 209/325 (64%), Gaps = 12/325 (3%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LAKPV+HVGF+ K KIL+CVCF+CSKL S+PK + K + R
Sbjct: 1 ECPGHFGHIELAKPVYHVGFIVKVKKILQCVCFFCSKLKADESNPKYSRA-RQIKDRKAR 59
Query: 135 RQAFIYDLCKGKNICEGGDEMD---INKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLD 191
+A ++D+CK K IC+ +E D N++ E+ ++ GHGGCG QP IR+ GL
Sbjct: 60 LKA-VWDVCKSKMICDNEEETDPATTNQEEVEESGEHTFRRNGHGGCGHRQPVIRKVGLR 118
Query: 192 LTAEW----KHVNEDSQEKKIPLTGKGVLLN-KKQGHGGCGRYQPNIRRSGLDLTAEWKH 246
L AE+ K +S++ P +L N + G R + +T
Sbjct: 119 LIAEFKNGIKGAMPESKQPLTPSQVHQILKNISDEDLEAMGLSTEFARPDWMIITVLPVP 178
Query: 247 VNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHV 306
+I + +G DDLTHKLADI+K N + R E+ GA HVI E ++LQFHV
Sbjct: 179 PPSVRPSIQIDGSSRGE--DDLTHKLADILKANVNVKRCEAEGAPAHVIDEFEQLLQFHV 236
Query: 307 ATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLR 366
AT DND+ G P+A+QKSGKPLK+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL
Sbjct: 237 ATYMDNDIVGQPQALQKSGKPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLS 296
Query: 367 IDQVGVPRSIAQNMTFPEIVTPFNM 391
ID+VGVPRSIA+N+T PE+V P+N+
Sbjct: 297 IDEVGVPRSIARNLTVPEMVAPYNI 321
>gi|303272485|ref|XP_003055604.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463578|gb|EEH60856.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1694
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 169/407 (41%), Positives = 228/407 (56%), Gaps = 59/407 (14%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A LR VK VQFG+LSP+EIR+MSV E ++ ET E GRPK GGL DPR G +DRS
Sbjct: 10 STAELRRVKAVQFGVLSPEEIRKMSVCE--VETAETYEKGRPKRGGLSDPRMGTMDRSMT 67
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+T + + PG+FGH++LAKPV+H GF+ +++LRCV + SKLL+ + +
Sbjct: 68 CETDGMDSKDTPGYFGHLELAKPVYHHGFINNVVRVLRCVGYSSSKLLLDKNDDPRFVEI 127
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
+K + R + F D CK K IC G QP
Sbjct: 128 MKIRNPKHRLKKFA-DTCKTKKICPS--------------------------TGTPQPQY 160
Query: 186 RRSGLDLTAEWKHVNEDSQ---------EKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRR 235
R G+ +TAE+K V+ D + E+KI +T + L + K C
Sbjct: 161 RLDGMKITAEFK-VSADEEDSGMMSYGGERKIQVTAEMALKILKNISDEDC--------- 210
Query: 236 SGLDLTAEWKH----------VNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRN 285
L L+ E H V + DDLT KL +I++ N L +
Sbjct: 211 IALGLSPEHAHPSWYILQVLPVPPHPVRPSVAFDASTRSEDDLTVKLMEIVRMNKNLQKQ 270
Query: 286 ESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGN 345
E +GA HVI E ++LQ+H+ T DN + G PR++ +SG+P+K+I RLKGK GRIRGN
Sbjct: 271 EMNGAPQHVIGEFTELLQYHIMTFMDNTVAGQPRSLTRSGRPIKSISERLKGKNGRIRGN 330
Query: 346 LMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
LMGKRVDFSARTVITPDPNL +D++GVP SIA NMT+PE+VTP+N++
Sbjct: 331 LMGKRVDFSARTVITPDPNLMLDELGVPWSIALNMTYPEMVTPYNIE 377
>gi|3172136|gb|AAC18417.1| RNA polymerase II largest subunit [Acanthamoeba castellanii]
Length = 1569
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 157/326 (48%), Positives = 216/326 (66%), Gaps = 19/326 (5%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGH++LAKPVF++GF+T +KILR VCF+CSKLLV + ++++V +
Sbjct: 1 ECPGHFGHLELAKPVFNIGFLTTVLKILRSVCFHCSKLLVDEAQ-ELKNV--------KH 51
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAE--DPNSLQNKKQGHGGCGRYQPNIRRSGLDL 192
R A +Y L K K ICEGG++ +K+ + DP + K+ HGGCG +QP I + G+ +
Sbjct: 52 RFARVYTLAKTKTICEGGEDTGTDKEQGDSTDPKEKKEVKKSHGGCGNFQPKITKDGMKI 111
Query: 193 TAEWKHVNEDSQ-EKKIPLTGKGV-LLNKKQGHGGCGR--YQPNIRR-SGLDLTAEWKHV 247
AE+K+V +D EKK LT + V + K C + P R + +T
Sbjct: 112 MAEFKNVGDDPNVEKKQLLTAEKVHAILKLISDEDCLAMGFDPKWARPDWMIITIMPIPP 171
Query: 248 NEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVA 307
+ +G DDLTHKLADIIK N L + E++GAA H+I++ ++LQ+H+A
Sbjct: 172 PPVRPSITMDSAARGE--DDLTHKLADIIKANANLRKQEANGAAAHIISQFQELLQYHIA 229
Query: 308 TLTDNDMPGLPRAMQKSG-KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLR 366
T DN++PG P+A +SG + LK++K RL+GKEGRIRGNLMGKRVDFSARTVIT DPN+
Sbjct: 230 TFIDNEIPGFPQATVRSGSRALKSLKQRLRGKEGRIRGNLMGKRVDFSARTVITGDPNIS 289
Query: 367 IDQVGVPRSIAQNMTFPEIVTPFNMD 392
ID+VGVPRSIA N+T+PE+VTPFN+D
Sbjct: 290 IDEVGVPRSIALNLTYPELVTPFNID 315
>gi|209880239|ref|XP_002141559.1| DNA-directed RNA polymerase II subunit RPB1 [Cryptosporidium muris
RN66]
gi|209557165|gb|EEA07210.1| DNA-directed RNA polymerase II subunit RPB1, putative
[Cryptosporidium muris RN66]
Length = 1927
Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 164/399 (41%), Positives = 232/399 (58%), Gaps = 43/399 (10%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S L+ + ++FG+LSPD IRR SV E I + E G+PK GGL DP G ID
Sbjct: 12 SNKELKKIYSIEFGVLSPDLIRRYSVLEVTIS--DLYENGKPKSGGLNDPLMGTIDYHVL 69
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+TC ++ CPGHF HI+L KP+FH+GFV+ +KILRCVCF CSKL + P PK + V+
Sbjct: 70 CETCHMDIKTCPGHFAHIELGKPMFHIGFVSVVLKILRCVCFACSKLFIDPMDPKFK-VI 128
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
KT+ R Q + ++ K + C I+ DG+ GCG QP I
Sbjct: 129 QKTRNPHLRLQRLV-EISKTYSRCV------ISSDGS--------------GCGFVQPQI 167
Query: 186 RRSGLDLT----AEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD-- 239
+ G +L E ++++++S + + L+ + VL K+ +++ G D
Sbjct: 168 SKDGYNLYIRQHEESRNMDDESTDSRRMLSAEEVLNIFKRITDE------DMKLLGFDPK 221
Query: 240 ------LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATH 293
+ + + G DDLT KL I+K N L R G+ H
Sbjct: 222 RCNPCWFVTTILPIPPPAVRPYVQF-GSDRSEDDLTLKLQQIVKLNENLKRQIRLGSPDH 280
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
++ E I +LQ+H+ TL +ND+PGLP++ +S +P+K+++ARLKGK+GRIRGNLMGKRVDF
Sbjct: 281 ILNEMIAVLQYHLVTLVNNDLPGLPQSRTRSNRPIKSLRARLKGKDGRIRGNLMGKRVDF 340
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
SARTVIT DPNL +DQVGVP SIA +T+PEIVTP+N++
Sbjct: 341 SARTVITGDPNLSVDQVGVPYSIAMTLTYPEIVTPYNIE 379
>gi|255941856|ref|XP_002561697.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586320|emb|CAP94069.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1733
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 171/446 (38%), Positives = 234/446 (52%), Gaps = 116/446 (26%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKAPLR +K++QFG+ +P+EI+RMSV I++PET++ R P+ G+ DPR G IDR
Sbjct: 9 SKAPLRTIKEIQFGLFAPEEIKRMSVVH--IEYPETLDDQRQRPRTKGINDPRLGTIDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
C+TC ECPGHFGHI+LA PVFH+GF+TK K+L VC C K+ + + K +
Sbjct: 67 YNCETCEEGPKECPGHFGHIELASPVFHIGFLTKIKKLLETVCHNCGKIKANTADSKFTE 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L+ + RR A I+ L K +CE
Sbjct: 127 A-LRFRDPKRRFDA-IWRLSKDVLVCEA-------------------------------- 152
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAE 243
D A+ + +++SQ K + HGGCG QP +R+ G+ L
Sbjct: 153 -------DAPADDEEFSKESQ--------------KGRSHGGCGNAQPTVRKEGICLVGT 191
Query: 244 W---KHVNEDSQ---EKKI----------------------------------------- 256
W K + ED EKK+
Sbjct: 192 WKPSKAMMEDEMAQPEKKVITPTMALNIFRNISVEDVRIMGLSNDYARPEWMILTVLPVP 251
Query: 257 -PLTGKGVLL---------DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHV 306
P V++ DDLT+KLA+I++ N + R E GA HVI E +LQ+H+
Sbjct: 252 PPTVRPSVVMGTTSGARGEDDLTYKLAEIVRANQNVQRCEQEGAPEHVIREFESLLQYHI 311
Query: 307 ATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLR 366
AT DND+ G P AMQK +P+KA+++RLKGKEGR+R NLMGKRVDFSARTVIT DPNLR
Sbjct: 312 ATYMDNDIAGQPTAMQKGNRPVKALRSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLR 371
Query: 367 IDQVGVPRSIAQNMTFPEIVTPFNMD 392
+D+VGVP S A+ +T+PE+VTP+N++
Sbjct: 372 LDEVGVPYSTARILTYPEVVTPYNIE 397
>gi|302835796|ref|XP_002949459.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f.
nagariensis]
gi|300265286|gb|EFJ49478.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f.
nagariensis]
Length = 1879
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 166/395 (42%), Positives = 223/395 (56%), Gaps = 42/395 (10%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S AP+R VK VQF + P EI+ SV E + ET E G+ KLGGL DPR G +DR
Sbjct: 10 SSAPVRQVKAVQFSVWDPAEIKAYSVAE--LVTSETYEKGKAKLGGLSDPRMGTMDRGGI 67
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C T N + PG+FGHI LA+PV+H+GF+ I++LRCV ++ S+LLV +R
Sbjct: 68 CTTDGANANDSPGYFGHIALARPVYHIGFIKTVIRVLRCVSYHTSRLLVDKYAYGLR--- 124
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
S +R + LC+GK + E G QP+
Sbjct: 125 ---ISDSEKRLRYFVHLCQGKKVDET--------------------------TGNPQPSY 155
Query: 186 RRSGLDLTAEWKHV------NEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGL 238
R GL + AE+ V +D+ E+K LT L + K+ + C + R +
Sbjct: 156 RLDGLKIMAEFPKVKGDEEQEQDNVERKQELTAARALEILKRIPNEDCKALGFDCRFTRP 215
Query: 239 D-LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
D + + V + + DDLTHKLA+I++ NN + + +S+G HVIAE
Sbjct: 216 DWMIIQNLPVPPPPVRPSVMMDSSSRCEDDLTHKLAEILRTNNAIKKQDSTGTPQHVIAE 275
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
I LQ+H+ T DN PG+PR+ QKSG+P+K+I RLKGK GRIRGNLMGKRVDFSART
Sbjct: 276 QIMALQYHITTYFDNSSPGIPRSNQKSGRPIKSISERLKGKSGRIRGNLMGKRVDFSART 335
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VIT DPN+ ID++GVP SIA N+TFPE VTPFN++
Sbjct: 336 VITGDPNIGIDELGVPWSIALNLTFPETVTPFNIE 370
>gi|325183802|emb|CCA18261.1| predicted protein putative [Albugo laibachii Nc14]
Length = 1819
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 171/378 (45%), Positives = 227/378 (60%), Gaps = 24/378 (6%)
Query: 35 GIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTC-------AGNMTECPGHFGHIDLAK 87
GI PET G P +GG+ DPR G D +RC+TC G + +CPGHFGHI+LA+
Sbjct: 17 GISRPETYLNGHPVIGGIGDPRMGTCDFRARCKTCDCTYSGSGGKVNDCPGHFGHIELAR 76
Query: 88 PVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKN 147
P++H+GF+ + +KILR VCF+CSK+L + R +K K RR +A ++++C GK
Sbjct: 77 PMYHLGFIKEVLKILRSVCFHCSKILSDERDHRFRSA-MKIKDGKRRLKA-VFEICNGKK 134
Query: 148 ICEGGDEMDINK---------DGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKH 198
+CE G E+D+ K G D + ++K+ GHGGCG QP +R G+ + E+
Sbjct: 135 LCEYGAEVDMEKMREDLNLGLQGGLD-DKTKSKEGGHGGCGGLQPIYKRQGIKILVEFPE 193
Query: 199 VNED---SQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDSQE 253
ED S ++K L VL + K C + R + D L V
Sbjct: 194 QMEDVPGSGDRKQNLPAAKVLSIFKNISDVDCHSLGLDSRWARPDWLILTLMPVPPPHVR 253
Query: 254 KKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDND 313
+ L G DDLTH LA I+K N L+ G +H+I + ++LQFH+AT +N+
Sbjct: 254 PSVALDGMARGEDDLTHNLASIVKANLALLNCVRKGEPSHIIEQFEQLLQFHLATFINNE 313
Query: 314 MPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVP 373
PGLP+A Q+SGKPLK ++ RL+GKEGRIRGNLMGKRVDFSARTVIT DPNL IDQVGVP
Sbjct: 314 QPGLPQAQQRSGKPLKTLRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLEIDQVGVP 373
Query: 374 RSIAQNMTFPEIVTPFNM 391
SIA N+T PE VTPFNM
Sbjct: 374 LSIAMNLTVPERVTPFNM 391
>gi|425770649|gb|EKV09117.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425771955|gb|EKV10383.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1733
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 171/446 (38%), Positives = 233/446 (52%), Gaps = 116/446 (26%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKAPLR +K++QFG+ +P+EI+RMSV I++PET++ R P+ G+ DPR G IDR
Sbjct: 9 SKAPLRTIKEIQFGLFAPEEIKRMSVVH--IEYPETLDDQRQRPRTKGINDPRLGTIDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
C+TC ECPGHFGHI+LA PVFH+GF+TK K+L VC C K+ + + K +
Sbjct: 67 YNCETCEEGPKECPGHFGHIELASPVFHIGFLTKIKKLLETVCHNCGKIKANTADSKFTE 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L+ + RR + I+ L K ICE
Sbjct: 127 A-LRFRDPKRRFDS-IWRLSKDVLICEA-------------------------------- 152
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAE 243
D + + ++DSQ K + HGGCG QP +R+ G+ L
Sbjct: 153 -------DAPVDDEEFSKDSQ--------------KGRSHGGCGNAQPTVRKEGICLVGT 191
Query: 244 W---KHVNEDSQ---EKKI----------------------------------------- 256
W K + ED EKK+
Sbjct: 192 WKPSKAMMEDEMAQPEKKVITPTMALNIFRNISVEDVRIMGLSNDYARPEWMILTVLPVP 251
Query: 257 -PLTGKGVLL---------DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHV 306
P V++ DDLT+KLA+I++ N + R E GA HVI E +LQ+H+
Sbjct: 252 PPTVRPSVVMGATSGARGEDDLTYKLAEIVRANQNVQRCEQEGAPEHVIREFESLLQYHI 311
Query: 307 ATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLR 366
AT DND+ G P AMQK +P+KA+++RLKGKEGR+R NLMGKRVDFSARTVIT DPNLR
Sbjct: 312 ATYMDNDIAGQPTAMQKGNRPVKALRSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLR 371
Query: 367 IDQVGVPRSIAQNMTFPEIVTPFNMD 392
+D+VGVP S A+ +T+PE+VTP+N++
Sbjct: 372 LDEVGVPYSTARILTYPEVVTPWNIE 397
>gi|290983563|ref|XP_002674498.1| RNA polymerase II [Naegleria gruberi]
gi|284088088|gb|EFC41754.1| RNA polymerase II [Naegleria gruberi]
Length = 1757
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 174/387 (44%), Positives = 219/387 (56%), Gaps = 49/387 (12%)
Query: 29 MSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHFGHIDLAKP 88
MSV E + ET E G+PK GLMD R G ID C TC GN TECPGHFGH+ + P
Sbjct: 1 MSVCE--VLHAETQEKGKPKESGLMDLRMGTIDHHLSCLTCGGNATECPGHFGHVRI-HP 57
Query: 89 VFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAF--IYDLC-KG 145
VF+V F+ +K+L+ VC +C KLL S + + K RR+ F + DLC K
Sbjct: 58 VFNVLFINTVVKVLQSVCIHCGKLLADKSSLQFK----KASKFVNRRKRFKEMIDLCRKD 113
Query: 146 KNICEGGD-EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQ 204
K I E G+ E + N++ DP Q GCG QP I R GL + AE+K + S
Sbjct: 114 KCIIETGNKENEQNQEANIDPTF-----QPRNGCGGLQPKISRDGLKIFAEYK--KDTSA 166
Query: 205 EKKIPLTGKGVLLNKK---------QGHGGCGRYQPNIRRSGLDLT----------AEWK 245
E K LT + + + + G + N R + LT
Sbjct: 167 EAKQELTKQELTAERALQIFKRIPAEDLELLGFDKDNARPEWMILTCLPIPPPQVRPSVH 226
Query: 246 HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFH 305
H + D E DDLTHKLADIIK N + +NE SG H + E ++MLQ+H
Sbjct: 227 HGSADRSE------------DDLTHKLADIIKANAAIQKNEKSGTPLHQMEEMVRMLQYH 274
Query: 306 VATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNL 365
AT +N+ PG+P A KSG+PLK+I+ RLKGKEGR+RGNLMGKRVDFSARTVIT DPN+
Sbjct: 275 CATYVNNEYPGVPTATTKSGRPLKSIRQRLKGKEGRVRGNLMGKRVDFSARTVITADPNI 334
Query: 366 RIDQVGVPRSIAQNMTFPEIVTPFNMD 392
IDQVGVPR++A NMT PEIVTPFN +
Sbjct: 335 DIDQVGVPRTVASNMTVPEIVTPFNFE 361
>gi|145351142|ref|XP_001419944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580177|gb|ABO98237.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1646
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 168/401 (41%), Positives = 228/401 (56%), Gaps = 51/401 (12%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A L V VQFG+LSPDEIR+MSV I+ ET E GRPK GGL DPR G +DR +
Sbjct: 10 STAELCRVNAVQFGVLSPDEIRKMSVC--AIETSETYEKGRPKRGGLSDPRMGTMDRGAV 67
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH-PKVRDV 124
C+T + + PG+FGH++LAKPV+H GF+ ++ILRCV + S+LL+ PK +
Sbjct: 68 CETDGCDSVQTPGYFGHLELAKPVYHHGFINVVLRILRCVGYSSSQLLLHKDEDPKFAQL 127
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPN 184
+ ++R ++ + D CK K++C G QP
Sbjct: 128 MRIKNPKNRLKK--LTDACKTKSVCPY--------------------------TGTAQPQ 159
Query: 185 IRRSGLDLTAEWKHVNED----SQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD 239
R G+ +TAE+KH +E+ E+K+ +T + L + K C R GLD
Sbjct: 160 YRLEGMKITAEFKHRDEELLPEGGERKVIVTAERALQILKAISDEDC-------RALGLD 212
Query: 240 ---LTAEW-----KHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAA 291
+W V + DDLT KL +I++ N L R E +GA
Sbjct: 213 PEHARPDWFILQVMPVPPPPVRPSVSFDASTRSEDDLTVKLMEIVRTNKNLERQEQNGAP 272
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
HVI E ++LQ+H+ T DN + G+PRA+ +SG+ +K+I RLKGK GRIRGNLMGKRV
Sbjct: 273 QHVILEFTELLQYHIMTFMDNTVAGMPRALTRSGRSIKSISERLKGKAGRIRGNLMGKRV 332
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DFSARTVITPDPNL +D++GVP SIA NMT+PE VTP+N+D
Sbjct: 333 DFSARTVITPDPNLMLDELGVPWSIALNMTYPETVTPYNID 373
>gi|321447689|gb|EFX61131.1| hypothetical protein DAPPUDRAFT_70163 [Daphnia pulex]
Length = 860
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 130/215 (60%), Positives = 162/215 (75%), Gaps = 15/215 (6%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
++++ +R VK+VQFG+LSPDEIRRMSVTEGGIK+ E + G+P+LG LMDPRQG I +S
Sbjct: 6 SETQPTIRQVKRVQFGLLSPDEIRRMSVTEGGIKYEEIFKDGKPRLGRLMDPRQGAIHQS 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+RCQTC M +CPGHFGHIDLAKPVFHVGF+ KTIKIL CVCFYCSKLLVSP++PK+++
Sbjct: 66 ARCQTCQRTMNDCPGHFGHIDLAKPVFHVGFLIKTIKILNCVCFYCSKLLVSPNNPKIKE 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+++K++GQ R+R A +YD+CK NICE N + + GH GCGRYQP
Sbjct: 126 ILVKSQGQPRKRMAHVYDICKRINICE---------------NDIGEETTGHIGCGRYQP 170
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLN 218
IRR GL + EWKHVNEDSQE I LT + VL N
Sbjct: 171 RIRRQGLGMIGEWKHVNEDSQETTIVLTAERVLEN 205
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 32/43 (74%)
Query: 222 GHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL 264
GH GCGRYQP IRR GL + EWKHVNEDSQE I LT + VL
Sbjct: 161 GHIGCGRYQPRIRRQGLGMIGEWKHVNEDSQETTIVLTAERVL 203
>gi|429964462|gb|ELA46460.1| hypothetical protein VCUG_02055 [Vavraia culicis 'floridensis']
Length = 1583
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 166/387 (42%), Positives = 218/387 (56%), Gaps = 52/387 (13%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
+K +QFG+ SP E+R SV I PET+ PK GGL+D R G +R C TCA +
Sbjct: 8 IKSIQFGLFSPQELRASSVVR--IDHPETLSNQAPKEGGLIDLRLGTTERQYLCATCAQS 65
Query: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQS 132
C GHFGHI+L +PVFHVG++ K K+L VCFYCS++ + + +D VL
Sbjct: 66 NLTCVGHFGHIELTRPVFHVGYMNKIKKLLETVCFYCSRIKAYDVYKEHKDAVL------ 119
Query: 133 RRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDL 192
R+ ++ + LCKGK C C QP I+R GL L
Sbjct: 120 RQGLSYFWGLCKGKTQCMH--------------------------CQSKQPLIKRDGLSL 153
Query: 193 TAEWKHVNEDSQEKKIPLTGKGV-LLNKKQGHGGCGRYQPNIRRSGLD---LTAEWK--- 245
A K ED+ E K+ L G+ V + K+ C G D EW
Sbjct: 154 IAFIK--GEDNTEGKVILNGERVHTVFKRISAEEC-------EVLGFDEKYARPEWMIIS 204
Query: 246 --HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
+V + + L G DDLTHKLADI+K N L + E GA H+I + +LQ
Sbjct: 205 VLNVPPPAVRPSVVLEGMLRGEDDLTHKLADIVKANANLAKYEREGAPGHIIRDYESLLQ 264
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
+HVATL DN++PGLP+++QKSG+PLK++ ARLKGKEGR+RGNLMGKRVDFSAR+VI+PD
Sbjct: 265 YHVATLMDNNIPGLPQSLQKSGRPLKSLSARLKGKEGRVRGNLMGKRVDFSARSVISPDS 324
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFN 390
N+ + +VGVP SIA+ TFPE V FN
Sbjct: 325 NISLCEVGVPESIAKVHTFPEQVMSFN 351
>gi|401409792|ref|XP_003884344.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
caninum Liverpool]
gi|325118762|emb|CBZ54313.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
caninum Liverpool]
Length = 1901
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 164/391 (41%), Positives = 227/391 (58%), Gaps = 21/391 (5%)
Query: 9 PLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQT 68
PL+ V ++QFG+ S ++IR+MSV E + E E G PK GL D R G +D +C+T
Sbjct: 15 PLKRVDQLQFGVFSSEQIRKMSVCE--VTTSELYEHGMPKANGLNDLRLGTLDYRQQCRT 72
Query: 69 CAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKT 128
C ++ CPGHFGH++L KPV+H GF+ +++LRCVC+ C KLLV PK++ V LK
Sbjct: 73 CNMDVKNCPGHFGHLNLVKPVYHYGFLGAVLRVLRCVCYACGKLLVDRRDPKMQQV-LKI 131
Query: 129 KGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRS 188
+ SRR + + D C G+ CEG + + DGA P + ++G GGCG QP +
Sbjct: 132 RSPSRRLK-HVLDACSGRKRCEG--YLPLPTDGAPAPLA----EEGEGGCGCVQPRYFKE 184
Query: 189 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLDLTAEWKHV 247
G ++ + E+ E + + ++ + R + +++ G D
Sbjct: 185 GPNIMVLFPDNREEGDEDVAEDIRR--IFAAEEAYTVLRRISEDDLKMMGFDPERAHPAS 242
Query: 248 NEDSQEKKIPLT-------GKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
S PL G DDLT KL DI+K N L R S + V+ E +
Sbjct: 243 FILSTLPIPPLAVRPSVQYGSARSEDDLTLKLVDIVKTNLSLKRQGDS-VPSAVLQEMVM 301
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
+LQ+HV TL DND+PG+P A + KP+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 302 LLQYHVTTLFDNDIPGMPVATTRGKKPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVIT 361
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DP L ID VGVP+SIA +T+PE VTP N+
Sbjct: 362 GDPMLPIDTVGVPKSIAMTLTYPEFVTPLNI 392
>gi|110669633|gb|ABG81911.1| RNA polymerase II largest subunit [Mycoblastus sanguinarius]
Length = 1016
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 160/334 (47%), Positives = 205/334 (61%), Gaps = 31/334 (9%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA PVFHVGF+TK K+L VC C K+LV S+P D L+ + RR
Sbjct: 1 ECPGHFGHIELAVPVFHVGFMTKIKKLLETVCHNCGKILVDESNPAFAD-ALRYRDPKRR 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
A ++ LCK K ICE M +++D D ++ K HGGCG QP +RR GL L
Sbjct: 60 FDA-VWRLCKPKMICE--TTMTLDEDAPSD--KMKEPKHDHGGCGNIQPEVRREGLRLNG 114
Query: 195 EWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEW 244
WK NE Q +K P+T + L R+ IRR GL EW
Sbjct: 115 TWKAQKGDEENEGQQPEKKPITPQMAL--------NIFRHISTDEIRRMGLSNDYARPEW 166
Query: 245 KHVN-----EDSQEKKIPLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ I + G + DDLT+KL DII+ N + R E+ G+ HV+ E
Sbjct: 167 MIITVLPVPPPPVRPSISVDGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNE 226
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSART
Sbjct: 227 FEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSART 286
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
VIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 287 VITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 320
>gi|120561217|gb|ABM26994.1| RNA polymerase II largest subunit, partial [Mucor hiemalis]
Length = 1009
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 159/323 (49%), Positives = 203/323 (62%), Gaps = 23/323 (7%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPV+H+GF+TK KIL CVCF+CSKL V ++P+ T +++ R ++D
Sbjct: 1 HIELAKPVYHIGFLTKVKKILECVCFHCSKLKVDETNPRFIRAKKITDAKTKLRA--VWD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQPNIRRSGLDLTAEWKHV 199
L K K CEG DE + DG E+ N +K HGGCG QP IR+ GL L A+++
Sbjct: 59 LAKTKMTCEGSDEAE---DGLEEKEEFDNGKRKSTHGGCGYKQPLIRKDGLKLYAQFRAN 115
Query: 200 NEDSQ--EKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWK-----HVNE 249
D E + LT VL K +IR GL EW V
Sbjct: 116 AGDDNGGEGRQQLTAAKVLQILKNIS------DQDIRDMGLSEEFARPEWMITTVLPVPP 169
Query: 250 DSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G DDLTHKL+D++K N + R ES GA HV+ E ++LQFH+AT
Sbjct: 170 PQVRPSIQMDGTSRGEDDLTHKLSDVLKANANVRRCESEGAPVHVVQEFEQLLQFHIATY 229
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND+ G P+A+QKSG+PLK+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +DQ
Sbjct: 230 MDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNLDQ 289
Query: 370 VGVPRSIAQNMTFPEIVTPFNMD 392
VGVPRSIA+N+T+PEIVTP+N+D
Sbjct: 290 VGVPRSIARNLTYPEIVTPYNID 312
>gi|110669637|gb|ABG81913.1| RNA polymerase II largest subunit [Lecanora hybocarpa]
Length = 1016
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 162/334 (48%), Positives = 201/334 (60%), Gaps = 31/334 (9%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA PVFHVGF+TK K+L VC C K+LV S+P D L+ + RR
Sbjct: 1 ECPGHFGHIELAVPVFHVGFMTKIKKLLETVCHNCGKILVDESNPAFVDA-LRYRDPKRR 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
A ++ LCK K ICE MD D A P + K HGGCG QP IRR GL L
Sbjct: 60 FDA-VWRLCKPKMICETTIAMD---DDAP-PEKQKEPKHDHGGCGNIQPEIRREGLRLNG 114
Query: 195 EWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEW 244
WK NE Q +K P+T + L R+ +IRR GL EW
Sbjct: 115 TWKPQKGDEENEVQQPEKKPITPQMAL--------NIFRHITTEDIRRMGLSNDYARPEW 166
Query: 245 KHVNEDSQEKKIPLTGKGVL-------LDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ V DDLT+KL DII+ N + R E+ G+ HV+ E
Sbjct: 167 MIITVLPVPPPPVRPSISVDGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNE 226
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSART
Sbjct: 227 FEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSART 286
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
VIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 287 VITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 320
>gi|120561241|gb|ABM27005.1| RNA polymerase II largest subunit, partial [Neocallimastix
frontalis]
Length = 1004
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 164/326 (50%), Positives = 198/326 (60%), Gaps = 35/326 (10%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PVFH+GF+ K KIL CVCF CSKL V S+ K+ G ++R ++
Sbjct: 1 HIELARPVFHIGFLPKIKKILECVCFQCSKLKVDESNTKLLQARQIKDG--KKRFHAVWS 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
LCKGK CE DE++ D K++GH GCG QP IRR GL L + NE
Sbjct: 59 LCKGKTTCESSDEIENEND---------EKRRGHNGCGFKQPTIRREGLVL---YYKFNE 106
Query: 202 DSQEKKIPL-TGKGVL-------LNKKQGHGGCGR--YQPNIRRSGLDLTAEWKHVN--- 248
S E+ I TGK VL + KK C PN R EW +
Sbjct: 107 KSSEEGIGRDTGKQVLTAERVLNIFKKISDEDCIDMGLNPNWAR------PEWMLITVLP 160
Query: 249 --EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHV 306
+ I + G DDLTHKL DII+ N L +E+ G+ HV+ E +LQFHV
Sbjct: 161 VPPPAVRPSISMGGAARGEDDLTHKLGDIIRANINLRNHEADGSPAHVVNEYEALLQFHV 220
Query: 307 ATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLR 366
AT DND G+P+AMQKSG+PLKAI+ARLKGKEGRIRGNLMGKRVDFSARTVIT DPN+
Sbjct: 221 ATFMDNDTAGIPQAMQKSGRPLKAIRARLKGKEGRIRGNLMGKRVDFSARTVITGDPNIS 280
Query: 367 IDQVGVPRSIAQNMTFPEIVTPFNMD 392
IDQVGVPRSIA+N+TFPE VTPFN+D
Sbjct: 281 IDQVGVPRSIARNLTFPETVTPFNID 306
>gi|221486415|gb|EEE24676.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii GT1]
gi|221508191|gb|EEE33778.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii VEG]
Length = 1892
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 161/391 (41%), Positives = 226/391 (57%), Gaps = 21/391 (5%)
Query: 9 PLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQT 68
PL+ V ++QFG+ S +++R+MSV E + E E G PK GL D R G +D +C+T
Sbjct: 15 PLKRVDQLQFGVFSSEQLRKMSVCE--VTTSELYEHGMPKANGLNDLRLGTLDYRQQCRT 72
Query: 69 CAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKT 128
C ++ CPGHFGH++L KPV+H GF+ +++LRCVC+ C KLLV PK++ + LK
Sbjct: 73 CNMDVKNCPGHFGHLNLVKPVYHYGFLGAVLRVLRCVCYACGKLLVDRRDPKMQHI-LKI 131
Query: 129 KGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRS 188
+ SRR + + D C G+ CEG + + DG P + ++G GGCG QP +
Sbjct: 132 RSPSRRLK-HVLDACAGRKRCEG--YLPLPADGMPVPLA----EEGEGGCGCVQPRYFKE 184
Query: 189 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLDLTAEWKHV 247
G ++ + E+ E + + ++ + R + +++ G D
Sbjct: 185 GPNIMVLFPDNREEGDEDVTEDIRR--IFAAEEAYAVLRRISEEDLKMMGFDPERAHPAS 242
Query: 248 NEDSQEKKIPLT-------GKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
S PL G DDLT KL DI+K N L R S + V+ E +
Sbjct: 243 FILSTLPIPPLAVRPSVQYGSARSEDDLTLKLVDIVKTNLSLKRQGDS-VPSAVLQEMVM 301
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
+LQ+HV TL DND+PG+P A + KP+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 302 LLQYHVTTLFDNDIPGMPVATTRGKKPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVIT 361
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DP L ID VGVP+SIA +T+PE VTP N+
Sbjct: 362 GDPMLPIDTVGVPKSIAMTLTYPEFVTPLNI 392
>gi|47214041|emb|CAG00699.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1745
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 141/221 (63%), Positives = 158/221 (71%), Gaps = 50/221 (22%)
Query: 222 GHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKI------------------------- 256
GHGGCGRYQP IRRSGL+L AEWKHVNEDSQEKKI
Sbjct: 1 GHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDMILGMD 60
Query: 257 -----------------PLTGKGVLL--------DDLTHKLADIIKCNNELIRNESSGAA 291
PL + ++ DDLTHKLADI+K NN+L RNE SGAA
Sbjct: 61 PKFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAA 120
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
HVIAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK+IK RLKGKEGR+RGNLMGKRV
Sbjct: 121 AHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRV 180
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DFSARTVITPDPNL+IDQVGVPRSIA NMTFPEIVTPFN+D
Sbjct: 181 DFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNID 221
>gi|222639938|gb|EEE68070.1| hypothetical protein OsJ_26086 [Oryza sativa Japonica Group]
Length = 804
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/331 (44%), Positives = 208/331 (62%), Gaps = 18/331 (5%)
Query: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQS 132
M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L K + + ++
Sbjct: 4 MAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTKFKQALKIRNPKN 63
Query: 133 RRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDL 192
R ++ IYD CK K +C GGD++D+ + +D + K+ GGCG QPNI G+ +
Sbjct: 64 RLKR--IYDACKSKKVCAGGDDLDVQEQ--QDTDEPVKKR---GGCGAQQPNITVDGMKM 116
Query: 193 TAEWK---HVNEDSQEKKIPLTGKGVL-----LN--KKQGHGGCGRYQPNIRRSGLD-LT 241
AE+K N+D ++ P+ K +L LN K+ C N + + D +
Sbjct: 117 VAEFKAPKKKNDDQEQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFARPDWMI 176
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
+ + + + DDLTH+LA II+ N L R E +GA H+I E ++
Sbjct: 177 LQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQL 236
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQFH+AT DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITP
Sbjct: 237 LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 296
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPN+ ID++GVP SIA N+T+PE VTP+N++
Sbjct: 297 DPNINIDELGVPWSIALNLTYPETVTPYNIE 327
>gi|110669614|gb|ABG81902.1| RNA polymerase II largest subunit [Canoparmelia caroliniana]
Length = 1016
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/336 (46%), Positives = 202/336 (60%), Gaps = 35/336 (10%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA PV+HVGF+TK K+L VC C K+LV S+P D + + ++
Sbjct: 1 ECPGHFGHIELAVPVYHVGFMTKIKKLLETVCHNCGKILVDESNPAFADAIRRR--DPKK 58
Query: 135 RQAFIYDLCKGKNICEGGDEMD--INKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDL 192
R ++ LCK K ICE +D + D ++P K HGGCG QP +RR GL L
Sbjct: 59 RFDMVWRLCKPKMICETTMALDNDVPSDKTKEP------KHDHGGCGNIQPEVRREGLRL 112
Query: 193 TAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTA 242
T WK NE Q +K P+T + L R+ +I+R GL
Sbjct: 113 TGTWKAQKGDEENEGQQPEKKPITPQMAL--------NIFRHISTEDIKRIGLSNDYARP 164
Query: 243 EWKHVNEDSQEKKIPLTGKGVL-------LDDLTHKLADIIKCNNELIRNESSGAATHVI 295
EW + V DDLT+KL DII+ N + R E+ G+ HV+
Sbjct: 165 EWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVV 224
Query: 296 AENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 355
E ++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSA
Sbjct: 225 NEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSA 284
Query: 356 RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 285 RTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 320
>gi|83320434|gb|ABC02844.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
Length = 1015
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 159/331 (48%), Positives = 204/331 (61%), Gaps = 30/331 (9%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPV+HVGF+ K KIL CVCF+CSKL ++PK K + R ++D
Sbjct: 1 HIELAKPVYHVGFIIKVKKILECVCFFCSKLKGDETNPKYARA--KQIKDRKARLKAVWD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQ------NKKQGHGGCGRYQPNIRRSGLDLTAE 195
+CK K IC+ +E D GA++ + N+++GHGGCG QP IR++GL L AE
Sbjct: 59 VCKSKMICDSVEETDPATAGAQEEMEVDENGEPVNRRKGHGGCGHRQPVIRKNGLKLFAE 118
Query: 196 WK----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAE-----WKH 246
+K + E K PLT Q H R + L+AE W
Sbjct: 119 FKNGKSYFKGAMPEDKQPLT-------PSQVHQILKRITDE-DLEDMGLSAEFARPDWMI 170
Query: 247 VNEDSQEK-----KIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
+ I + G DDLTHKLADI+K N + R E+ GA HVI E ++
Sbjct: 171 ITVLPVPPPPVRPSIQMDGSSRGEDDLTHKLADILKANVNVKRCETEGAPVHVIDEFEQL 230
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQFHVAT DND+ G P+A+QKSG+PLK+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 231 LQFHVATYMDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 290
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPNL ID+VGVPRSIA+N+TFPE+VTP+N++
Sbjct: 291 DPNLSIDEVGVPRSIARNLTFPEMVTPYNIE 321
>gi|237833803|ref|XP_002366199.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii ME49]
gi|211963863|gb|EEA99058.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii ME49]
Length = 1892
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 161/391 (41%), Positives = 225/391 (57%), Gaps = 21/391 (5%)
Query: 9 PLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQT 68
PL+ V ++QFG+ S +++R+MSV E + E E G PK GL D R G +D +C+T
Sbjct: 15 PLKRVDQLQFGVFSSEQLRKMSVCE--VTTSELYEHGMPKANGLNDLRLGTLDYRQQCRT 72
Query: 69 CAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKT 128
C ++ CPGHFGH++L KPV+H GF+ +++LRCVC+ C KLLV PK++ + LK
Sbjct: 73 CNMDVKNCPGHFGHLNLVKPVYHYGFLGAVLRVLRCVCYACGKLLVDRRDPKMQHI-LKI 131
Query: 129 KGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRS 188
+ SRR + + D C G+ CEG + + DG P + ++G GGCG QP +
Sbjct: 132 RSPSRRLK-HVLDACAGRKRCEG--YLPLPADGMPVPLA----EEGEGGCGCVQPRYFKE 184
Query: 189 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLDLTAEWKHV 247
G ++ + E+ E + + ++ + R + +++ G D
Sbjct: 185 GPNIMVLFPDNREEGDEDVTEDIRR--IFAAEEAYAVLRRISEEDLKMMGFDPERAHPAS 242
Query: 248 NEDSQEKKIPLT-------GKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
S PL G DDLT KL DI+K N L R S V+ E +
Sbjct: 243 FILSTLPIPPLAVRPSVQYGSARSEDDLTLKLVDIVKTNLSLKRQGDSVPGA-VLQEMVM 301
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
+LQ+HV TL DND+PG+P A + KP+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 302 LLQYHVTTLFDNDIPGMPVATTRGKKPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVIT 361
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DP L ID VGVP+SIA +T+PE VTP N+
Sbjct: 362 GDPMLPIDTVGVPKSIAMTLTYPEFVTPLNI 392
>gi|440494147|gb|ELQ76552.1| RNA polymerase II, large subunit, partial [Trachipleistophora
hominis]
Length = 1748
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 165/387 (42%), Positives = 216/387 (55%), Gaps = 55/387 (14%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
+K +QFG+ SP E+R SV I PET+ PK GGL+D R G +R C TC +
Sbjct: 24 IKSIQFGLFSPQELRASSVVR--IDHPETLSNQAPKEGGLIDLRLGTTERQYLCATCGQS 81
Query: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQS 132
C GHFGHI+L +PVFHVG++ K K+L VCFYCS++ K DV +G
Sbjct: 82 NLTCVGHFGHIELTRPVFHVGYMNKIKKLLETVCFYCSRI-------KAYDV--HKEGVH 132
Query: 133 RRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDL 192
R+ ++ + LCKGK C C QP I+R GL L
Sbjct: 133 RQGLSYFWGLCKGKTQCMH--------------------------CQSKQPLIKRDGLSL 166
Query: 193 TAEWKHVNEDSQEKKIPLTGKGV-LLNKKQGHGGCGRYQPNIRRSGLD---LTAEWK--- 245
A + ED+ E K+ L G+ V + K+ C G D EW
Sbjct: 167 IAFIR--GEDNTEGKVILNGERVHTVFKRISTEEC-------EALGFDEQYARPEWMIIS 217
Query: 246 --HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
+V + + L G DDLTHKLADI+K N L + E GA H+I + +LQ
Sbjct: 218 VLNVPPPAVRPSVVLEGMLRGEDDLTHKLADIVKANANLAKYEREGAPGHIIRDYESLLQ 277
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
+HVATL DN++PGLP+++QKSG+PLK++ ARLKGKEGR+RGNLMGKRVDFSAR+VI+PD
Sbjct: 278 YHVATLMDNNIPGLPQSLQKSGRPLKSLSARLKGKEGRVRGNLMGKRVDFSARSVISPDS 337
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFN 390
N+ + +VGVP IA+ TFPE VT FN
Sbjct: 338 NISLCEVGVPEQIARIHTFPEHVTAFN 364
>gi|110669625|gb|ABG81907.1| RNA polymerase II largest subunit [Echinoplaca strigulacea]
Length = 1017
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 156/332 (46%), Positives = 204/332 (61%), Gaps = 27/332 (8%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA PVFHVGF+TK K+L VC C K+LV S+P D L+ + RR
Sbjct: 1 ECPGHFGHIELAVPVFHVGFITKIKKLLETVCHNCGKILVDESNPAFAD-ALRYRDPKRR 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
A ++ LCK K ICE ++ ++ E + + HGGCG QP IRR GL L
Sbjct: 60 FDA-VWRLCKPKMICETTSMLEDDQANEES----KKTRHDHGGCGNVQPEIRREGLRLNG 114
Query: 195 EWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKH 246
WK NE++Q +K +T + L H + +I+R GL EW
Sbjct: 115 TWKVQKGDEENENAQPEKRQITPQMAL---NVFHHISSQ---DIQRMGLSNDYARPEWMI 168
Query: 247 VNEDSQEKKIPLT------GKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENI 299
+ G GV DDLT+KL DII+ N + R E+ G+ HV+ E
Sbjct: 169 ITVLPVPPPPVRPSVAVDGGNGVRGEDDLTYKLGDIIRANGNVRRCEAEGSPAHVVNEFE 228
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVI
Sbjct: 229 QLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVI 288
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
T DPNL +D+VGVPRS+A+ +T+PE VTP+N+
Sbjct: 289 TGDPNLSLDEVGVPRSVARTLTYPETVTPYNI 320
>gi|110669639|gb|ABG81914.1| RNA polymerase II largest subunit [Bacidia schweinitzii]
Length = 1016
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 159/334 (47%), Positives = 202/334 (60%), Gaps = 31/334 (9%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA PVFHVGF+TK K+L VC C K+LV S+P D + +R
Sbjct: 1 ECPGHFGHIELAAPVFHVGFMTKIKKLLETVCHNCGKILVDESNPAFADA--QRYRDPKR 58
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
R ++ LCK K ICE + + +DP + +K HGGCG QP IRR GL LT
Sbjct: 59 RFDAVWRLCKPKLICEATPAAE-DDAPTDDP---KKQKHDHGGCGNAQPEIRREGLRLTG 114
Query: 195 EWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPN--IRRSGLD---LTAEW 244
WK E Q K P+T + VL R+ N I R GL EW
Sbjct: 115 TWKPQKGDDETEAQQPDKRPITPQMVL--------NIFRHISNEDIERMGLSNDYARPEW 166
Query: 245 KHVNEDSQEK-----KIPLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ I + G L DDLT+KL DII+ N + R ++ G+ HV+ E
Sbjct: 167 MIITVLPVPPPPVRPSISVDGGNGLRGEDDLTYKLGDIIRANGNVQRCDAEGSPAHVVNE 226
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSART
Sbjct: 227 FEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSART 286
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
VIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 287 VITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNI 320
>gi|110669631|gb|ABG81910.1| RNA polymerase II largest subunit [Peltigera degenii]
Length = 1011
Score = 273 bits (699), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 155/330 (46%), Positives = 209/330 (63%), Gaps = 29/330 (8%)
Query: 76 CPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRR 135
CPGHFGHI+LA PVFHVGF+TK K+L VC C K+L+ S+ ++ L+ + RR
Sbjct: 1 CPGHFGHIELAVPVFHVGFMTKIKKLLETVCHNCGKILLDESNADFKNA-LRFRDPKRRF 59
Query: 136 QAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAE 195
A I+ CK K +C D + + D A P+ Q K HGGCG QP IR+ GL LT
Sbjct: 60 DA-IWKACKPKMVC---DMLVLADDDA--PDKSQEPKHDHGGCGNRQPEIRKEGLKLTGT 113
Query: 196 WKHV--NEDSQEKKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLDLTA---EWKHVN 248
WK +E+SQ++K P+T + L R+ +I++ GL++ EW +
Sbjct: 114 WKARKDDEESQDEKRPITPQNAL--------NIFRHISSEDIQKMGLNVDYARPEWMIIT 165
Query: 249 EDSQEK-----KIPLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
I + G + DDLT+KL DII+ N + E+ G+ HV+AE ++
Sbjct: 166 VLPVPPPPVRPSIAVDGGNGMRGEDDLTYKLGDIIRANGNVRTCEAEGSPAHVVAEFEQL 225
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 226 LQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 285
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 286 DPNLSLDEVGVPRSIARTLTYPETVTPYNI 315
>gi|169806355|ref|XP_001827922.1| DNA-directed RNA polymerase II largest subunit [Enterocytozoon
bieneusi H348]
gi|161778990|gb|EDQ31017.1| DNA-directed RNA polymerase II largest subunit [Enterocytozoon
bieneusi H348]
Length = 1541
Score = 273 bits (698), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 161/379 (42%), Positives = 223/379 (58%), Gaps = 35/379 (9%)
Query: 16 VQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTE 75
+ FG+ SP+EI++ SV + PET+E G PK GL+D R G +++ CQTC NM +
Sbjct: 12 INFGLFSPEEIKKTSVVH--VIHPETIENGVPKENGLIDLRMGTTEKNFLCQTCNENMFD 69
Query: 76 CPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV-VLKTKGQSRR 134
C GHFGHI+L KP+FH+G++TK K+L C+CFYCSK ++D +LK K ++
Sbjct: 70 CVGHFGHIELCKPMFHIGYITKIKKLLECICFYCSK---------IKDFKLLKEKTKNYT 120
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
+ +++ K K C+ +N+K GC QP I++ G++L A
Sbjct: 121 LEE-AWNILKTKTFCDS-----------------ENEKGEKIGCCNKQPIIKKEGMNLIA 162
Query: 195 EWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQE 253
K N+D E K+ L G+ V + KK N+ ++ V S
Sbjct: 163 FMKG-NDD--EGKVILNGEKVCNIFKKIDASELKFIGFNVNSRPENMLITVLLVTPPSVR 219
Query: 254 KKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDND 313
I LT DDLTHK ADI+K N L + E GA H+I + ++LQFH++TL +N+
Sbjct: 220 PSI-LTDGLRSEDDLTHKYADIVKSNACLKKYEQDGAPNHIIRDYEQLLQFHLSTLINNE 278
Query: 314 MPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVP 373
+ G P AMQKSG+P+K+I ARLKGKEGRIRGNLMGKRVDFSAR+VITPDP + +D+VGVP
Sbjct: 279 ISGQPIAMQKSGRPIKSISARLKGKEGRIRGNLMGKRVDFSARSVITPDPAIELDEVGVP 338
Query: 374 RSIAQNMTFPEIVTPFNMD 392
IA TFPE V N++
Sbjct: 339 LHIAMIQTFPEKVNSININ 357
>gi|133325|sp|P28364.1|RPB1_EUPOC RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|2673850|emb|CAA47068.1| DNA-directed RNA polymerase II largest subunit [Euplotes
octocarinatus]
Length = 478
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 165/408 (40%), Positives = 237/408 (58%), Gaps = 54/408 (13%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
+S + V+K+QFG+L P EI+ MSV + ++ + + G P GG+ D R G ++++
Sbjct: 8 TESTMDFQKVRKIQFGLLDPKEIQAMSVVQ--VENEKIYDNGIPTDGGINDLRMGTMEKA 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TC G+ ECPGHFGHI+LA+PVFH+GF+ KIL+CVCF C+KLL++ H K
Sbjct: 66 MRCSTCQGDSKECPGHFGHIELAQPVFHIGFIDLVKKILKCVCFNCNKLLITDKHDKYS- 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
LK + + +Y +CK +C D + + G G+ QP
Sbjct: 125 -ALKRVKDPKLKLNKVYKVCKDIKVCGKAD---------------RKSETYTEGSGQKQP 168
Query: 184 NIRRSGLDLTAEWKHVNED---SQEKKIPLTGKGVLLNKKQGHGGCGRYQP-NIRRSGLD 239
+R++GL + AE+ ++ED + + K L+ L GR P + + G D
Sbjct: 169 RLRKTGLKIKAEFP-IDEDDPSTNDNKRDLSASECL-------KILGRISPDDCKFLGFD 220
Query: 240 LTA---EWKHVNEDSQEKKIPLTGKGV-----------LLDDLTHKLADIIKCNNELIRN 285
+ EW ++ ++P+ V DDLTH+ I+K NN+L ++
Sbjct: 221 MVLARPEWLIIS------RLPVAPPPVRPSVCMGSNIRQEDDLTHQYQQILKANNQLRKH 274
Query: 286 ESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKS-GKPLKAIKARLKGKEGRIRG 344
S+ A H+I EN ++LQF+ ATL DN+ G + KS GK +KAI+ARLKGKEGR+RG
Sbjct: 275 LST--ANHIINENYQLLQFYCATLIDNEQAGQMVSRHKSGGKAIKAIRARLKGKEGRLRG 332
Query: 345 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
NLMGKRVDFSARTVIT DP L +DQ+GVPRSIA+N+T PE+VTP N+D
Sbjct: 333 NLMGKRVDFSARTVITCDPTLDLDQLGVPRSIAENITIPEVVTPQNID 380
>gi|402468610|gb|EJW03738.1| hypothetical protein EDEG_01976 [Edhazardia aedis USNM 41457]
Length = 2270
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 170/416 (40%), Positives = 231/416 (55%), Gaps = 62/416 (14%)
Query: 12 CVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAG 71
+K VQFG+ SP +I++ SV ++ PET+E G PK GL DPR GVID C TC
Sbjct: 13 TIKSVQFGLFSPVKIKQHSVLH--VQHPETLENGMPKESGLSDPRMGVIDNQLLCSTCNL 70
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQ 131
N EC GHFGHI+L KPVFHV F+ + K+L VCFYCS + S KT +
Sbjct: 71 NCMECQGHFGHIELCKPVFHVNFLNRIKKVLETVCFYCSSIKNS-----------KTDNE 119
Query: 132 SRRRQAFIYDLCKGKNI-CEGGDEMDINK--DGAEDPNSL-------------------- 168
++ + K K++ G+E I K +G S+
Sbjct: 120 EQKNSD--SQMVKSKSLSTSSGNESTIGKSSNGTSQEESMIRPQCSIPKTSLRNALNKVW 177
Query: 169 -QNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGC 226
NK K CG QP IR+ G++L A K N D++ K V+L ++ +G
Sbjct: 178 AANKTKFTCDVCGNKQPIIRKEGMNLLAFMK--NTDTEGK--------VILTAEKAYGIL 227
Query: 227 GRYQ-PNIRRSGLDLT---AEWKHVNEDSQEKKIPLTGKGVLLD------DLTHKLADII 276
+ +I + G D+ EW + + P V +D DLTHK ADII
Sbjct: 228 KKISDEDIVKLGFDIEHSRPEWMILT--TLLVSPPSCRPAVQMDNLRGEDDLTHKYADII 285
Query: 277 KCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLK 336
K NN L R E+ GA +H++ + ++LQFHVATL DN++ G P+A+QK+G+PLK++ ARLK
Sbjct: 286 KANNNLRRYETEGAPSHILRDYEQLLQFHVATLMDNEISGQPQALQKNGRPLKSLSARLK 345
Query: 337 GKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
GKEGR+R NLMGKRVDFSARTVITPDPN+ +D+VG+P ++A TF E V N+D
Sbjct: 346 GKEGRLRYNLMGKRVDFSARTVITPDPNISLDEVGIPFTVAMTHTFSEHVNLLNID 401
>gi|110669635|gb|ABG81912.1| RNA polymerase II largest subunit [Pertusaria dactylina]
Length = 1015
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 155/338 (45%), Positives = 207/338 (61%), Gaps = 39/338 (11%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA PVFH+GF++KT K+L VC C K+L S P++ + + + +R
Sbjct: 1 ECPGHFGHIELAVPVFHIGFMSKTKKLLEVVCHNCGKILADESEPEMAEAC-RYRDPKKR 59
Query: 135 RQAFIYDLCKGKNICE---GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLD 191
A I+ LC+ K +CE GD D N D ++P K HGGCG QP IRR GL
Sbjct: 60 FNA-IWTLCRKKTVCETTVAGD--DENMDKPKEP------KHDHGGCGNRQPQIRREGLK 110
Query: 192 LTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LT 241
LT WK N+ Q +K P+T + L R+ +I++ GL
Sbjct: 111 LTGTWKAEKGDEENDGQQAEKKPITPQMAL--------NIFRHISTEDIKKMGLSNDYAR 162
Query: 242 AEWKHVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATH 293
EW + I + G G + DDLT+KL DII+ N + R E+ G+ H
Sbjct: 163 PEWMIITVLPVPPPPVRPSISVDGSGQGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAH 222
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
V+ E ++LQ+HVAT DND+ G P+A+Q SG+P+K+I+ARLKGKEGR+RGNLMGKRVDF
Sbjct: 223 VVNEFEQLLQYHVATYMDNDIAGQPQALQSSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 282
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
SARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 283 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 320
>gi|66359288|ref|XP_626822.1| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A''
subunit, long PHYSPTS repeat at
gi|46228363|gb|EAK89262.1| putative DNA-directed RNA polymerase,possible RNA polymerase
A/beta'/A'' subunit, long PHYSPTS repeat at C-terminus
[Cryptosporidium parvum Iowa II]
Length = 1902
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 164/406 (40%), Positives = 227/406 (55%), Gaps = 56/406 (13%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S L+ V ++FG+LSP+ IR+ SV E IK + E GRPK GGL DP G D
Sbjct: 19 SSKELKRVFSIEFGVLSPELIRKYSVLE--IKVSDIYENGRPKSGGLNDPLLGTTDYHIL 76
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+TC ++ CPGHF HI+L KP+FH+GF+T +K+LRCVC+ CSKL V PK + +
Sbjct: 77 CETCHMDIKTCPGHFAHIELGKPMFHIGFITTVLKLLRCVCYACSKLFVDTLDPKFKQI- 135
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
K R R L K + I+ DG+ GCG QP
Sbjct: 136 -KRIKNPRLR------LKKILEMRSSSSRCIISSDGS--------------GCGFVQPTY 174
Query: 186 RRSGLDLTA-----EWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD 239
+ G +L E + ++++S + K L + VL + K+ H +++ G D
Sbjct: 175 SKEGYNLYINQNQDENRIIDDESVDSKRLLAAEEVLTIFKRISHD-------DMKILGFD 227
Query: 240 ---LTAEWKHVNEDSQEKKIPLTGKGV----------LLDDLTHKLADIIKCNNELIRNE 286
W +N IP+ V DDLT KL IIK N L +
Sbjct: 228 PVKCNPSW-FIN-----TVIPIPPPAVRPYVQFGSDRSEDDLTLKLQQIIKLNENLKKQI 281
Query: 287 SSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNL 346
G+ H+I+E +LQ+H+ TL +ND+PGLP++ +S +P+K+++ARLKGK+GRIRGNL
Sbjct: 282 RIGSPEHIISEMSTVLQYHLITLINNDLPGLPQSRTRSNRPIKSLRARLKGKDGRIRGNL 341
Query: 347 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
MGKRVDFSARTVIT DPNL +DQVGVP SIA +T+PE+VTP+N++
Sbjct: 342 MGKRVDFSARTVITGDPNLAVDQVGVPYSIAMTLTYPEVVTPYNIE 387
>gi|67597591|ref|XP_666157.1| DNA-directed RNA polymerase II largest chain [Cryptosporidium
hominis TU502]
gi|54657094|gb|EAL35927.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Cryptosporidium hominis]
Length = 1895
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 164/406 (40%), Positives = 227/406 (55%), Gaps = 56/406 (13%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S L+ V ++FG+LSP+ IR+ SV E IK + E GRPK GGL DP G D
Sbjct: 12 SSKELKRVFSIEFGVLSPELIRKYSVLE--IKVSDIYENGRPKSGGLNDPLLGTTDYHIL 69
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+TC ++ CPGHF HI+L KP+FH+GF+T +K+LRCVC+ CSKL V PK + +
Sbjct: 70 CETCHMDIKTCPGHFAHIELGKPMFHIGFITTVLKLLRCVCYACSKLFVDTLDPKFKQI- 128
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
K R R L K + I+ DG+ GCG QP
Sbjct: 129 -KRIRNPRLR------LKKILEMRSSSSRCIISSDGS--------------GCGFVQPTY 167
Query: 186 RRSGLDLTA-----EWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD 239
+ G +L E + ++++S + K L + VL + K+ H +++ G D
Sbjct: 168 SKEGYNLYINQNQDENRIIDDESVDSKRLLAAEEVLTIFKRISHD-------DMKILGFD 220
Query: 240 ---LTAEWKHVNEDSQEKKIPLT----------GKGVLLDDLTHKLADIIKCNNELIRNE 286
W +N IP+ G DDLT KL IIK N L +
Sbjct: 221 PVKCNPSW-FIN-----TVIPIPPPTVRPYVQFGSDRSEDDLTLKLQQIIKLNENLKKQI 274
Query: 287 SSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNL 346
G+ H+I+E +LQ+H+ TL +ND+PGLP++ +S +P+K+++ARLKGK+GRIRGNL
Sbjct: 275 RIGSPEHIISEMSTVLQYHLITLINNDLPGLPQSRTRSNRPIKSLRARLKGKDGRIRGNL 334
Query: 347 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
MGKRVDFSARTVIT DPNL +DQVGVP SIA +T+PE+VTP+N++
Sbjct: 335 MGKRVDFSARTVITGDPNLAVDQVGVPYSIAMTLTYPEVVTPYNIE 380
>gi|110669647|gb|ABG81918.1| RNA polymerase II largest subunit, partial [Peltula umbilicata]
Length = 388
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 156/332 (46%), Positives = 200/332 (60%), Gaps = 24/332 (7%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA PVFHVGF++K K+L VC C KLLV S+P+ D L+ + RR
Sbjct: 1 ECPGHFGHIELATPVFHVGFMSKIKKLLEMVCHNCGKLLVDESNPQFADA-LRYRDPKRR 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
A ++ LCK K +CE +D G +D KK HGGCG QP +RR GL L
Sbjct: 60 FDA-VWRLCKPKMLCESDTTLD-EDFGGDDMTKPPVKKFNHGGCGNVQPEVRREGLRLWG 117
Query: 195 EWK----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHV 247
WK NE SQ +K +T + L K I++ GL EW +
Sbjct: 118 TWKLPKDEANEGSQTEKKSITPQMALNVFKHISA------EEIKKMGLSNDYARPEWMII 171
Query: 248 NEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENI 299
I + G G DDLT+KL DII+ N + R G+ H++ E
Sbjct: 172 TVLPVPPPPVRPSISIDGSGQGSRGEDDLTYKLGDIIRANGNVRRCHLEGSPAHILNEFE 231
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
+LQFHVAT DND+ G P+A+QKSG+P+K+I++RLKGKEGR+RGNLMGKRVDFSARTVI
Sbjct: 232 SLLQFHVATYMDNDIAGQPQALQKSGRPIKSIRSRLKGKEGRLRGNLMGKRVDFSARTVI 291
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
T DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 292 TGDPNLSLDEVGVPRSIAKVLTYPETVTPYNI 323
>gi|120561221|gb|ABM26996.1| RNA polymerase II largest subunit, partial [Funneliformis mosseae]
Length = 1054
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 159/342 (46%), Positives = 205/342 (59%), Gaps = 36/342 (10%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPVFH+GF+ K KIL C+C +CSKL S+ K V K + RR +A ++D
Sbjct: 1 HIELAKPVFHIGFLPKVKKILECICIHCSKLKTDDSNAKFA-VARKIRDPKRRLRA-VWD 58
Query: 142 LCKGKNICEGGDEMDINKDGAED------PNSLQNK------------------KQGHGG 177
+CK K ICE G+E + + D D PN QNK K+ HGG
Sbjct: 59 ICKSKTICEKGEEQENDPDKTSDYEDDYIPNG-QNKPIPQRTTTPAEDLGLIKVKKPHGG 117
Query: 178 CGRYQPNIRRSGLDLTAEWKHVNEDSQ---EKKIPLTGKGVLLNKKQGHG----GCGRYQ 230
CG QP IR+ GL L +K + + Q E + LT V + K+ G +
Sbjct: 118 CGARQPTIRKDGLKLYMNYKARDSEEQTGQETRQVLTPAQVYIIFKKISSEDLIDLGLNE 177
Query: 231 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGA 290
R + +T ++ T +G DDLTHKLADI+K N L R ES G+
Sbjct: 178 EYARPDWMIITCLPVPPPPVRPSIQMDGTSRGE--DDLTHKLADILKANQNLRRYESDGS 235
Query: 291 ATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
HV++E +LQFH AT DN+M G P+A+QKSG+PLK+I+ARLKGKEGR+RGNLMGKR
Sbjct: 236 PAHVVSEFESLLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKR 295
Query: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VDFSARTVIT DPN+ +D+VGVP+SIA N+TFPEIVTPFN+D
Sbjct: 296 VDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVD 337
>gi|110669629|gb|ABG81909.1| RNA polymerase II largest subunit [Roccella fuciformis]
Length = 1017
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 161/330 (48%), Positives = 199/330 (60%), Gaps = 17/330 (5%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA PVFH GFVTK KIL VC C KLL +P + K RR
Sbjct: 1 ECPGHFGHIELAVPVFHAGFVTKVKKILESVCHNCGKLLDDERNPHFK-AACNIKDPKRR 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
A I+ LCK K +CE + D N D +P + + K +GHGGCG QP IRR L LT
Sbjct: 60 FDA-IHKLCKPKMVCEPDIQDDGNDDFGGNPKA-KLKVKGHGGCGNIQPEIRRDALRLTG 117
Query: 195 EWKHVNEDSQ------EKKI--PLTGKGVLLN-KKQGHGGCGRYQPNIRRSGLDLTAEWK 245
WK + Q EKKI P V N +G G R L LT
Sbjct: 118 TWKLPKGEEQEEDKGPEKKIITPQMALNVFRNITDRGLTLLGSNADYARPEWLILTV--L 175
Query: 246 HVNEDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKML 302
V + I + G + DDLT+KL+DII+ N+ + R E G+ HV+ E + +L
Sbjct: 176 PVPPPAVRPSISVDGTSQGMRSEDDLTYKLSDIIRANSNVKRCEQEGSPQHVVDEFVSLL 235
Query: 303 QFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD 362
Q+HVAT DND+ GLP+A QKSG+P+KAI+ARLK KEGR+RGNLMGKRVDFSARTVIT D
Sbjct: 236 QYHVATYMDNDIAGLPKAQQKSGRPVKAIRARLKSKEGRLRGNLMGKRVDFSARTVITGD 295
Query: 363 PNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PNL +D+VGVPRSIA+ +TFPE V +N++
Sbjct: 296 PNLSLDEVGVPRSIARTLTFPETVNSYNIN 325
>gi|113957446|gb|ABI49112.1| RNA polymerase II largest subunit [Lobaria scrobiculata]
Length = 384
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 156/335 (46%), Positives = 204/335 (60%), Gaps = 34/335 (10%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA PVFHVGF+TK K+L VC C K+LV S+ D L+ + RR
Sbjct: 1 ECPGHFGHIELAVPVFHVGFMTKIKKLLETVCHNCGKILVDESNSAFAD-ALRYRDPKRR 59
Query: 135 RQAFIYDLCKGKNICE-GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLT 193
A I+ LCK K +CE D N D +++P K HGGCG QP +RR G+ L
Sbjct: 60 FDA-IWRLCKTKMVCETAAATEDDNMDKSKEP------KHDHGGCGNVQPEVRREGMKLN 112
Query: 194 AEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAE 243
WK NE Q +K P+T + L R+ + IR+ GL E
Sbjct: 113 GTWKPQKGDEENEGQQPEKKPITPQMAL--------NIFRHISEDEIRKMGLSNDYARPE 164
Query: 244 WKHVN-----EDSQEKKIPLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIA 296
W + I + G + DDLT+KL DII+ + + E+ G+ HV+A
Sbjct: 165 WMIITVLPVPPPPVRPSISVDGGNGMRGEDDLTYKLGDIIRASGNVRTCEAEGSPAHVVA 224
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
+ ++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSAR
Sbjct: 225 DFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSAR 284
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
TVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 285 TVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 319
>gi|428671620|gb|EKX72538.1| DNA-directed RNA polymerase II largest subunit, putative [Babesia
equi]
Length = 1733
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 159/406 (39%), Positives = 220/406 (54%), Gaps = 57/406 (14%)
Query: 10 LRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTC 69
L+ V+ V+FG+L P+ ++RMSV E + E G P+ GGL D R G D C TC
Sbjct: 16 LKKVRMVEFGVLDPELVKRMSVCE--VSLSELYRDGVPQTGGLNDLRMGTTDPRHVCTTC 73
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTK 129
+ C GHFGHI LAKP++H GF+T +KILRCVC+ CS+LL P++R+++ KT+
Sbjct: 74 CMGLQHCNGHFGHIVLAKPMYHYGFLTTVLKILRCVCYNCSRLLCDKDDPRIRNLI-KTR 132
Query: 130 GQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSG 189
S R + D+C C+ + D GCG QP R G
Sbjct: 133 ATSSRLSR-LADVCSSSFRCQNASQSD----------------SKLKGCGYPQPKYTREG 175
Query: 190 LDLTAEW-------------------KHVNEDSQEKKIPLTGKGVLLNKKQGHGGC-GRY 229
+ ++ + +N D K + KG+ + + G R
Sbjct: 176 PGIMIQFSQKQRQILEEVEEECDEIKRTLNADEAFKIL----KGITIEDMRYLGFTPERS 231
Query: 230 QPN---IRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNE 286
QP+ ++ + A +V S + DDLT KL DI+K NN + R++
Sbjct: 232 QPSWLILQVLPVPPPAVRPYVQYGSDRSE----------DDLTLKLLDIVKTNNLIKRHD 281
Query: 287 SSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNL 346
A H++ E ++LQFH+ TL DND+PG+P A +S KP+K+I+ARLKGKEGR+RGNL
Sbjct: 282 KRATAPHIVQEMAQLLQFHITTLFDNDIPGMPIASTRSKKPIKSIRARLKGKEGRLRGNL 341
Query: 347 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
MGKRVDFSARTVIT DPNL ID +GVP+SIA +TF E VTP N +
Sbjct: 342 MGKRVDFSARTVITGDPNLPIDTIGVPKSIAMTLTFSETVTPLNFE 387
>gi|308808522|ref|XP_003081571.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
gi|116060036|emb|CAL56095.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
Length = 1673
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 164/418 (39%), Positives = 232/418 (55%), Gaps = 65/418 (15%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSV---TEGG-IKFP--------------ETMEGGRP 47
S A L V VQFG+LSPDEI+R + T+G + FP +T E GRP
Sbjct: 10 STAELCRVDAVQFGVLSPDEIKRANAGGGTDGSTVIFPRAQRKMSVCAIESSDTYEKGRP 69
Query: 48 KLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCF 107
K GGL DPR G +DR + C+T + + PG+FGH++LAKPV+H GF+ +++LRCV +
Sbjct: 70 KRGGLSDPRMGTMDRGAVCETDGCDSVQTPGYFGHLELAKPVYHHGFINVVLRVLRCVGY 129
Query: 108 YCSKLLVSPSH-PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPN 166
S+LL+ PK ++ ++R ++ + D CK K++C P
Sbjct: 130 SSSQLLLHKDEDPKFAQLMRIKNPKNRLKK--LTDACKTKSVC---------------PY 172
Query: 167 SLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE----DSQEKKIPLTGKGVLLNKKQG 222
+ G QP R G+ +TAE+KH ++ + E+K+ +T + L K
Sbjct: 173 T-----------GTAQPQYRLEGMKITAEFKHRDDELLPEGGERKVVVTAERALQILK-- 219
Query: 223 HGGCGRYQPNIRRSGLD--------LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLAD 274
G + R GLD + + V + DDLT KL +
Sbjct: 220 ----GISDEDCRVLGLDPEHARPDWMILQVMPVPPPPVRPSVSFDASTRSEDDLTVKLME 275
Query: 275 IIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKAR 334
I++ N L R E +GA HVI E ++LQ+H+ T DN + G+PRA+ +SG+ +K+I R
Sbjct: 276 IVRTNKNLERQEQNGAPQHVILEFTELLQYHIMTFMDNTVAGMPRALTRSGRSIKSISER 335
Query: 335 LKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
LKGK GRIRGNLMGKRVDFSARTVITPDPNL +D++GVP SIA NMT+PE VTP+N++
Sbjct: 336 LKGKAGRIRGNLMGKRVDFSARTVITPDPNLMLDELGVPWSIALNMTYPETVTPYNIE 393
>gi|294876122|ref|XP_002767562.1| DNA-directed RNA polymerase II largest subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239869222|gb|EER00280.1| DNA-directed RNA polymerase II largest subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 1667
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 167/420 (39%), Positives = 226/420 (53%), Gaps = 57/420 (13%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A L+ V V+FGILSP + T+ P GGL DPR G +D +
Sbjct: 12 SSAELKKVASVEFGILSPQQ---------------TIAQSEPVRGGLSDPRLGSVDPRTP 56
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C+TC M +CPGHFGH++LAKP++H GF+ T+K LRCVC+YCSKLL P+ ++ V
Sbjct: 57 CETCGMKMRDCPGHFGHLELAKPMYHGGFLKTTLKALRCVCYYCSKLLADPNDLVIKRV- 115
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAED------------------PNS 167
L+ K R QA +CK + +C+ G + K G + P++
Sbjct: 116 LRVKNPKTRLQAMSV-ICKSRKVCDSGGMESVMKSGGKQQDEDIDDEDVAHTGTLVHPST 174
Query: 168 LQNKKQGHGGCGRYQPNIRRSGLDLTAEW-KHVNEDSQE--------KKIPLTGKGV--L 216
GCG QP+ G+ + + NE++++ K PL+ + +
Sbjct: 175 TSLVVLNMLGCGYAQPSYTVQGMQIIVSFPSSANEENEDGVVVDQGDTKRPLSAETAYNI 234
Query: 217 LNKKQ-----GHGGC-GRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTH 270
L++ G GR +P S L LT G DDLT
Sbjct: 235 LSRISVPDMIAMGFTPGRSEP----SWLILTVVPVPPPPVRPSVAFG-GGTDRAEDDLTL 289
Query: 271 KLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKA 330
KL DI+K N L R +GA +H++ E +LQ+H+ TL DN++PG+P A KS K +K+
Sbjct: 290 KLQDIVKVNQMLKRQLETGAGSHIVNEIAALLQWHLYTLQDNNIPGMPEAQTKSKKAIKS 349
Query: 331 IKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN 390
I++RLKGKEGRIRGNLMGKRVDFSARTVIT DPN+ IDQVGVP+SIA N+TF E VTP N
Sbjct: 350 IRSRLKGKEGRIRGNLMGKRVDFSARTVITGDPNIDIDQVGVPKSIAMNLTFAERVTPLN 409
>gi|399218278|emb|CCF75165.1| unnamed protein product [Babesia microti strain RI]
Length = 1801
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 170/428 (39%), Positives = 227/428 (53%), Gaps = 53/428 (12%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S L+ V+ + FGI P+ ++RMSV E + E + G P GL D R G D
Sbjct: 12 SSCELKRVRSIDFGIFEPEFLKRMSVCE--VTSAELYKDGLPNSCGLNDLRMGTTDYRIN 69
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C TC ++ CPGHFGHI LAKP++H GF+T +K+LRCVC+ C +LL+SP P+ +
Sbjct: 70 CSTCNMDVKHCPGHFGHITLAKPMYHYGFITTVMKVLRCVCYNCGRLLISPEDPRAMALK 129
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICE--------------------------GGDE-MDIN 158
+ Q R A +LC CE G DE +D N
Sbjct: 130 NRPGAQKLHRMA---ELCVSHYKCETNIKGQTDGKADGNGLTMGSISGLSNGADEPIDGN 186
Query: 159 KDGAEDPNSLQN----KKQGHG-GCGRYQPNIRRSGLDLTAEWK--------HVNEDSQE 205
G P + QN K G G GCG QP + G +L ++ +E +
Sbjct: 187 PVGG--PKAEQNGSVKKLDGIGMGCGYPQPKYYKEGPNLMIQFSDKQKELLGEADEYIEG 244
Query: 206 KKIPLTGKGVLLNKK---QGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKG 262
K+ + + + K+ + G R S L LT V S + G
Sbjct: 245 KRTLYAEEALEILKRISEEDMKALGFNPARSRPSWLILTV--LPVPPPSVRPYVQF-GSD 301
Query: 263 VLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQ 322
DDLT KL DI+K N++L + E G A H+I E ++LQFH+ TL DN++PG+P A
Sbjct: 302 RSEDDLTLKLMDILKTNSQLKKQEERGVAAHIIQEMCQLLQFHITTLFDNEIPGMPVAST 361
Query: 323 KSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTF 382
+S KP+KAI++RLKGKEGR+RGNLMGKRVDFSARTVIT DPN+ ID +GVP+SIA +TF
Sbjct: 362 RSKKPIKAIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNIPIDTIGVPKSIAMTLTF 421
Query: 383 PEIVTPFN 390
PE VTP N
Sbjct: 422 PETVTPLN 429
>gi|213556958|gb|ACJ53770.1| RNA polymerase II [Plasmodium gallinaceum]
Length = 2200
Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 168/427 (39%), Positives = 234/427 (54%), Gaps = 57/427 (13%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S L+ VK+++ G+L P+ I+++SV E I + + G P+ GGL D R G ID +
Sbjct: 10 SACDLKRVKRLELGVLDPEIIKKISVCE--IVNVDIYKDGLPREGGLNDIRMGTIDYKTL 67
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C TC N+ CPGHFGHI LAKP++H GF+ + +LRCVC++C +LL + ++ KV+ +
Sbjct: 68 CGTCNMNVKYCPGHFGHIQLAKPMYHYGFMNVVLNVLRCVCYHCGRLLCNMNNSKVK-YI 126
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGG---DEMDINKDGAED------------------ 164
K K S R + + +LC +C+ D ++IN + ++
Sbjct: 127 EKIKVNSLRLRK-LSELCSSIKVCDHSVHEDSLNINDNSIDNFYNNDLSNLNVNQKMLLN 185
Query: 165 PNSLQN----KKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE-DSQEKKIPLTGKGVL--L 217
PN+ N + CG QP R G ++ ++ H +E D E K L+ + L L
Sbjct: 186 PNTYSNIFEMVSKEDVDCGCVQPKYTREGPNMFIQFLHSSEEDIDESKRKLSAEEALEIL 245
Query: 218 NK--KQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPL----------TGKGVLL 265
K K+ G G S L LT IP+ G
Sbjct: 246 KKIRKEEMGILGFNSDRCIPSSLILTY-------------IPIPPPCARPYVQYGNQRSE 292
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
DDLT KL DI+K N +L R GA +HV+ + +LQFH+ TL DND+PG+P A +S
Sbjct: 293 DDLTLKLLDIVKTNIQLKRQTDRGAKSHVLQDLCSLLQFHITTLFDNDIPGMPIATTRSK 352
Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
KP+KAI+ RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL ID +GVP+S+A +TF E
Sbjct: 353 KPIKAIRTRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLDIDYIGVPKSVAMTLTFCET 412
Query: 386 VTPFNMD 392
VTP N +
Sbjct: 413 VTPLNYE 419
>gi|113957510|gb|ABI49118.1| RNA polymerase II largest subunit [Diploschistes cinereocaesius]
Length = 385
Score = 267 bits (683), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 152/334 (45%), Positives = 202/334 (60%), Gaps = 31/334 (9%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA PVFHVGF+TK K+L VC C K+L + P ++ + G +R
Sbjct: 1 ECPGHFGHIELATPVFHVGFMTKIKKLLETVCHNCGKILSDENDPTFKEAMRFRDG--KR 58
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
R I+++CK K +CE +++D +D + + +K HGGCG QP IRR GL L
Sbjct: 59 RFDAIWNVCKSKMVCE---NTPLSED--DDSDKPKERKHNHGGCGNTQPTIRRKGLTLMG 113
Query: 195 EWKHVNED-----SQEKKIPLTGKGVLLNKKQGHGGCGRYQP-NIRRSGLD---LTAEWK 245
WK D +Q + P+T H R +I+ GL EW
Sbjct: 114 TWKAQKGDDEAEGTQNETKPIT-------PSTAHSVFRRISTEDIKIMGLSNDYARPEWM 166
Query: 246 HVNEDSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ I + G G + DDLT+KL DII+ N + R E G+ HV+ E
Sbjct: 167 IITVLPVPPPPVRPSISVDGSGTGMQSEDDLTYKLGDIIRANGNVRRCEMDGSPGHVVTE 226
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSART
Sbjct: 227 FEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSART 286
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
VIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 287 VITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 320
>gi|358441939|gb|AEU11320.1| RPB1 [Funneliformis mosseae]
Length = 535
Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 159/342 (46%), Positives = 204/342 (59%), Gaps = 36/342 (10%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPVFH+GF+ K KIL C+C +CSKL S+ K V K + RR +A ++D
Sbjct: 1 HIELAKPVFHIGFLPKVKKILECICIHCSKLKTDDSNAKFA-VARKIRDPKRRLRA-VWD 58
Query: 142 LCKGKNICEGGDEMDINKDGAED------PNSLQNK------------------KQGHGG 177
+CK K ICE G+E + + D D PN QNK K+ HGG
Sbjct: 59 ICKSKTICEKGEEQENDPDKTSDYEDDYIPNG-QNKPIPQRTTTPAEDLGLIKVKKPHGG 117
Query: 178 CGRYQPNIRRSGLDLTAEWKHVNEDSQ---EKKIPLTGKGVLLNKKQGHG----GCGRYQ 230
CG QP IR+ GL L +K + + Q E + LT V K+ G +
Sbjct: 118 CGARQPTIRKDGLKLYMNYKARDSEEQTGQETRQVLTPAQVYTIFKKISSEDLIDLGLNE 177
Query: 231 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGA 290
R + +T ++ T +G DDLTHKLADI+K N L R ES G+
Sbjct: 178 EYARPDWMIITCLPVPPPPVRPSIQMDGTSRGE--DDLTHKLADILKANQNLRRYESDGS 235
Query: 291 ATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
HV++E +LQFH AT DN+M G P+A+QKSG+PLK+I+ARLKGKEGR+RGNLMGKR
Sbjct: 236 PAHVVSEFESLLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKR 295
Query: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VDFSARTVIT DPN+ +D+VGVP+SIA N+TFPEIVTPFN+D
Sbjct: 296 VDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVD 337
>gi|71027119|ref|XP_763203.1| DNA-directed RNA polymerase II largest subunit [Theileria parva
strain Muguga]
gi|68350156|gb|EAN30920.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
parva]
Length = 1681
Score = 267 bits (682), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 161/406 (39%), Positives = 229/406 (56%), Gaps = 49/406 (12%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S L+ ++ ++FG+L P+ ++RMSV E I E G P+ GGL D R G D
Sbjct: 12 SPCELKRIRAIEFGLLDPELVKRMSVCE--ITLTELYREGIPQTGGLNDLRMGTTDPRHI 69
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C TC+ ++ CPGHFGHI LAKP++H GF+ +KILRCVCF CSKLL++ + P+V+ ++
Sbjct: 70 CLTCSMDLKYCPGHFGHIVLAKPMYHYGFMMTVLKILRCVCFNCSKLLLNKNDPRVQ-LI 128
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
LK+ S R + +LC C + + + GCG QP+
Sbjct: 129 LKSPSSSFRLN-HLSELCSASRTCRIDTQTNTKIE----------------GCGYPQPSY 171
Query: 186 RRSGLDLTAEW----KHVNEDSQEK----KIPLTG-------KGVLLNKKQGHGGC-GRY 229
+ G +L ++ + + E+S E+ K PLT +G+ L + G R
Sbjct: 172 TKEGPNLMIQFSQKQREILEESDEQCNDIKRPLTPEEAFKVLRGITLEDMKCLGFVPERS 231
Query: 230 QP---NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNE 286
QP ++ + A +V S + DDLT KL D++K NN + R++
Sbjct: 232 QPCWLILQVLPVPPPAVRPYVQYGSDRSE----------DDLTLKLLDVLKTNNLIKRHD 281
Query: 287 SSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNL 346
A H+I E ++LQFH+ TL DND+PG+P A +S KP+K+I+ARLKGKEGR+RGNL
Sbjct: 282 KRATAPHIIQEMCQLLQFHITTLFDNDIPGMPIASTRSKKPIKSIRARLKGKEGRLRGNL 341
Query: 347 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
MGKRVDFSARTVIT DPN+ ID +GVP+SIA +TF E V N +
Sbjct: 342 MGKRVDFSARTVITGDPNIPIDTIGVPKSIAMTLTFCETVNSLNYE 387
>gi|113707384|gb|ABI36591.1| RNA polymerase II largest subunit [Gyalideopsis vulgaris]
Length = 1015
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 154/332 (46%), Positives = 205/332 (61%), Gaps = 28/332 (8%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA PVFHVGF+TK K+L VC C K+LV S+P + L+++ +R
Sbjct: 1 ECPGHFGHIELAAPVFHVGFLTKIKKLLETVCHNCGKILVDESNPAFLEA-LRSR-DPKR 58
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
R I+ LCK K ICE M ++ D +E + + HGGCG QP +RR L LT
Sbjct: 59 RFDMIWRLCKPKLICE--TSMPLDDDHSE---KTKEPRHDHGGCGNIQPEVRREALKLTG 113
Query: 195 EWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKH 246
WK +E Q +K P+T + + LN + +I+ GL EW
Sbjct: 114 TWKAQKGDDEHEAQQAEKKPITPQ-MALNVFRNIS-----TEDIKTMGLSNDYARPEWMI 167
Query: 247 VNEDSQEK-----KIPLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENI 299
+ I + G + DDLT+KL DII+ N + R + G+ H+I E
Sbjct: 168 ITVLPVPPPPVRPSISMDGGAGMRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLIQEFE 227
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
+LQFHVAT DN++ GLP+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVI
Sbjct: 228 NLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVI 287
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
T DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 288 TGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 319
>gi|358441931|gb|AEU11316.1| RPB1 [Funneliformis mosseae]
gi|358441941|gb|AEU11321.1| RPB1 [Funneliformis mosseae]
Length = 603
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 159/342 (46%), Positives = 204/342 (59%), Gaps = 36/342 (10%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPVFH+GF+ K KIL C+C +CSKL S+ K V K + RR +A ++D
Sbjct: 1 HIELAKPVFHIGFLPKVKKILECICIHCSKLKTDDSNAKFA-VARKIRDPKRRLRA-VWD 58
Query: 142 LCKGKNICEGGDEMDINKDGAED------PNSLQNK------------------KQGHGG 177
+CK K ICE G+E + + D D PN QNK K+ HGG
Sbjct: 59 ICKSKTICEKGEEQENDPDKTSDYEDDYIPNG-QNKPIPQRTTTPAEDLGLIKVKKPHGG 117
Query: 178 CGRYQPNIRRSGLDLTAEWKHVNEDSQ---EKKIPLTGKGVLLNKKQGHG----GCGRYQ 230
CG QP IR+ GL L +K + + Q E + LT V K+ G +
Sbjct: 118 CGARQPTIRKDGLKLYMNYKARDSEEQTGQETRQVLTPAQVYTIFKKISSEDLIDLGLNE 177
Query: 231 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGA 290
R + +T ++ T +G DDLTHKLADI+K N L R ES G+
Sbjct: 178 EYARPDWMIITCLPVPPPPVRPSIQMDGTSRGE--DDLTHKLADILKANQNLRRYESDGS 235
Query: 291 ATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
HV++E +LQFH AT DN+M G P+A+QKSG+PLK+I+ARLKGKEGR+RGNLMGKR
Sbjct: 236 PAHVVSEFESLLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKR 295
Query: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VDFSARTVIT DPN+ +D+VGVP+SIA N+TFPEIVTPFN+D
Sbjct: 296 VDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVD 337
>gi|110669612|gb|ABG81901.1| RNA polymerase II largest subunit [Cladonia caroliniana]
Length = 1016
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 156/336 (46%), Positives = 202/336 (60%), Gaps = 35/336 (10%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA PVFHVGF+TK K+L VC C K+ + S+PK D L+ + +R
Sbjct: 1 ECPGHFGHIELAVPVFHVGFMTKIKKLLETVCHNCGKIKLDESNPKFADA-LRFRDPKKR 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAED--PNSLQNKKQGHGGCGRYQPNIRRSGLDL 192
A I+ CK K +CE +D ED P + K HGGCG QP IRR GL L
Sbjct: 60 FDA-IWRHCKVKMVCETTVALD------EDAPPEKQKEPKHEHGGCGNVQPEIRREGLRL 112
Query: 193 TAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTA 242
T WK E Q +K P+T + L R+ + +I GL
Sbjct: 113 TGTWKPQKGDEETEGQQPEKKPITPQMAL--------NIFRHISEEDIATLGLSKDYARP 164
Query: 243 EWKHVNEDSQEK-----KIPLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVI 295
EW + I + G + DDLT+KL DII+ N + R E+ G+ HV+
Sbjct: 165 EWMIITVLPVPPPPVRPSISVDGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVV 224
Query: 296 AENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 355
E ++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSA
Sbjct: 225 NEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSA 284
Query: 356 RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RTVIT DPNL +D+VGVPRS+A+ +T+PE VTP+N+
Sbjct: 285 RTVITGDPNLSLDEVGVPRSVARTLTYPETVTPYNI 320
>gi|358441933|gb|AEU11317.1| RPB1 [Funneliformis mosseae]
Length = 617
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 159/342 (46%), Positives = 204/342 (59%), Gaps = 36/342 (10%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPVFH+GF+ K KIL C+C +CSKL S+ K V K + RR +A ++D
Sbjct: 1 HIELAKPVFHIGFLPKVKKILECICIHCSKLKTDDSNAKFA-VARKIRDPKRRLRA-VWD 58
Query: 142 LCKGKNICEGGDEMDINKDGAED------PNSLQNK------------------KQGHGG 177
+CK K ICE G+E + + D D PN QNK K+ HGG
Sbjct: 59 ICKSKTICEKGEEQENDPDKTSDYEDDYIPNG-QNKPIPQRTTTPAEDLGLIKVKKPHGG 117
Query: 178 CGRYQPNIRRSGLDLTAEWKHVNEDSQ---EKKIPLTGKGVLLNKKQGHG----GCGRYQ 230
CG QP IR+ GL L +K + + Q E + LT V K+ G +
Sbjct: 118 CGARQPTIRKDGLKLYMNYKARDSEEQTGQETRQVLTPAQVYTIFKKISSEDLIDLGLNE 177
Query: 231 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGA 290
R + +T ++ T +G DDLTHKLADI+K N L R ES G+
Sbjct: 178 EYARPDWMIITCLPVPPPPVRPSIQMDGTSRGE--DDLTHKLADILKANQNLRRYESDGS 235
Query: 291 ATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
HV++E +LQFH AT DN+M G P+A+QKSG+PLK+I+ARLKGKEGR+RGNLMGKR
Sbjct: 236 PAHVVSEFESLLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKR 295
Query: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VDFSARTVIT DPN+ +D+VGVP+SIA N+TFPEIVTPFN+D
Sbjct: 296 VDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVD 337
>gi|40217261|emb|CAD67612.1| largest subunit of RNA polymerase II [Drosophila pseudoobscura]
Length = 147
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 120/143 (83%), Positives = 137/143 (95%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DSKAPLR VK+VQFGILSPDEIRRMSVTEGG++F ETMEGGRPKLGGLMDPRQGVIDR+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK+++
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 124 VVLKTKGQSRRRQAFIYDLCKGK 146
+V+K+KGQ R+R A++YDLCKGK
Sbjct: 125 IVVKSKGQPRKRLAYVYDLCKGK 147
>gi|362412136|gb|AEW12836.1| RPB1 [Smittium simulii]
Length = 419
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 155/332 (46%), Positives = 203/332 (61%), Gaps = 29/332 (8%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PV+H GF+ K K+L CVC+YCSKL V S+P+ V + S RR I+D
Sbjct: 1 HIELARPVYHPGFIVKVKKVLECVCWYCSKLKVDGSNPEF--VAAQKVTNSNRRLKLIWD 58
Query: 142 LCKGKNICEGGDEMD-----INKDGAEDPNSL------QNKKQGHGGCGRYQPNIRRSGL 190
LC+ + +CE + D N + AE +L + +GHGGCG QP IR+ GL
Sbjct: 59 LCQSRTVCEASEPEDRAGNNENLNEAEKSRNLIDGIIGSKRSRGHGGCGHKQPVIRKEGL 118
Query: 191 DLTAEWKHVN--EDSQEKKIPLTGKGVLLNKKQGHGGCGRY---QPNIRRSGLDLTAEW- 244
LTA +KH + E E K L+ VL K+ Y P++ R EW
Sbjct: 119 KLTAAFKHSSGEEGVPEGKHFLSVLQVLQVLKKITDEDAIYMGLNPSLAR------PEWF 172
Query: 245 ----KHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + I + DDLT+KL DI+K N + E GA H+I E
Sbjct: 173 IMTVMPVPPLAVRPSIQMDATRQSEDDLTYKLNDILKANIRVQSCEVEGAPLHIIEEFES 232
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
+LQFHVAT +N++ GLP+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 233 LLQFHVATFMNNEISGLPQALQKSGRPIKSIRARLKGKEGRVRGNLMGKRVDFSARTVIT 292
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPN+ IDQVGVPRSIA+NMTFPE+VTP+N++
Sbjct: 293 GDPNIDIDQVGVPRSIARNMTFPEVVTPYNIE 324
>gi|83320424|gb|ABC02839.1| RNA polymerase II largest subunit, partial [Polychytrium
aggregatum]
Length = 1016
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 158/334 (47%), Positives = 210/334 (62%), Gaps = 36/334 (10%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPVFH GF+ K K+L CVCFYC KL V S+ K + L K ++RR Q +++
Sbjct: 1 HIELAKPVFHCGFIKKIKKVLECVCFYCGKLKVDDSNEKFKKARL-IKDRNRRFQE-VWE 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQN-----------KKQGHGGCGRYQPNIRRSGL 190
LC+ K +CE GD +N+D + + K + HGGCG QP R+ L
Sbjct: 59 LCRAKTVCEVGD---LNEDEHGGDDGHRGDGVSQRADSKPKGKAHGGCGSKQPAFRKLAL 115
Query: 191 DL--TAEWKHVNEDSQE-KKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEW 244
DL T + N+ ++E KK+ LT + V+ K + +I GL EW
Sbjct: 116 DLSYTVVLRDDNDQTKETKKVDLTAEKVVSIFKSIS------EEDINNMGLSQDWARPEW 169
Query: 245 KHVNEDSQEKKIPL-------TGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ + +P+ G GV DDLT+K+ADI+K NN L ++E+ G+ HVI E
Sbjct: 170 MCITVLAV-PPMPVRPAVNMNNGGGVSQDDLTYKIADIVKTNNLLRKHEAEGSPAHVINE 228
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
K+LQ+HVAT +ND+ G+P+A QKSG+PLK+I+ARLKGKEGR+RGNLMGKRVDFSART
Sbjct: 229 FEKLLQYHVATYMNNDISGIPKAQQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSART 288
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
VIT DPNL IDQVGVPRSIA+N+TFPE VTP+N+
Sbjct: 289 VITGDPNLSIDQVGVPRSIARNLTFPENVTPYNI 322
>gi|358441929|gb|AEU11315.1| RPB1 [Funneliformis coronatum]
Length = 534
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 157/341 (46%), Positives = 202/341 (59%), Gaps = 34/341 (9%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPVFH+GF+ K KIL C+C +CSKL S+ K V K + RR +A ++D
Sbjct: 1 HIELAKPVFHIGFLPKVKKILECICIHCSKLKTDDSNAKFA-VARKIRDPKRRLRA-VWD 58
Query: 142 LCKGKNICEGGDEMDINKDGAED------PNS-----------------LQNKKQGHGGC 178
+CK K ICE G+E + + D D PN L K+ HGGC
Sbjct: 59 ICKSKTICEKGEEQENDPDKTSDYEDDYIPNGQHKPIPQRTTTPAEDLGLIKVKKPHGGC 118
Query: 179 GRYQPNIRRSGLDLTAEWKHVNEDSQ---EKKIPLTGKGVLLNKKQGHG----GCGRYQP 231
G QP IR+ GL L +K + + Q E + LT V K+ G +
Sbjct: 119 GARQPTIRKDGLKLYMNYKARDSEEQTGQETRQVLTPAQVYSIFKKISSEDLIDLGLNEE 178
Query: 232 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAA 291
R + +T ++ T +G DDLTHKLADI+K N L R ES G+
Sbjct: 179 YARPDWMIITCLPVPPPPVRPSIQMDGTSRGE--DDLTHKLADILKANQNLRRYESDGSP 236
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
HV++E +LQFH AT DN+M G P+A+QKSG+PLK+I+ARLKGKEGR+RGNLMGKRV
Sbjct: 237 AHVVSEFESLLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRV 296
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DFSARTVIT DPN+ +D+VGVP+SIA N+TFPEIVTPFN+D
Sbjct: 297 DFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVD 337
>gi|362412145|gb|AEW12839.1| RPB1 [Smittium simulii]
gi|362412148|gb|AEW12840.1| RPB1 [Smittium sp. TN-3-12]
Length = 419
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 155/336 (46%), Positives = 202/336 (60%), Gaps = 37/336 (11%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PV+H GF+ K K+L CVC+YCSKL V S+P+ V + S RR I+D
Sbjct: 1 HIELARPVYHPGFIVKVKKVLECVCWYCSKLKVDGSNPEF--VAAQKVTNSNRRLKLIWD 58
Query: 142 LCKGKNICEGGDEMD-----INKDGAEDPNSL------QNKKQGHGGCGRYQPNIRRSGL 190
LC+ + +CE + D N + AE +L + +GHGGCG QP IR+ GL
Sbjct: 59 LCQSRTVCEASEPEDRAGNNENLNEAEKSRNLIDGIIGSKRSRGHGGCGHKQPVIRKEGL 118
Query: 191 DLTAEWKHVNEDSQEKKIPLTGKGVL--------LNKKQGHGGCGR-YQPNIRRSGLDLT 241
LTA +KH S E+ +P GK L L K P++ R
Sbjct: 119 KLTAAFKH---SSGEEGVP-EGKHFLSVLQVLQVLKKITDEDAISMGLNPSLAR------ 168
Query: 242 AEW-----KHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
EW V + I + DDLT+KL DI+K N + E GA H+I
Sbjct: 169 PEWFIMTVMPVPPLAVRPSIQMDATRQSEDDLTYKLNDILKANIRVQSCEVEGAPLHIIE 228
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E +LQFHVAT +N++ GLP+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSAR
Sbjct: 229 EFESLLQFHVATFMNNEISGLPQALQKSGRPIKSIRARLKGKEGRVRGNLMGKRVDFSAR 288
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVIT DPN+ IDQVGVPRSIA+NMTFPE+VTP+N++
Sbjct: 289 TVITGDPNIDIDQVGVPRSIARNMTFPEVVTPYNIE 324
>gi|358441935|gb|AEU11318.1| RPB1 [Funneliformis geosporum]
Length = 617
Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 206/342 (60%), Gaps = 36/342 (10%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPVFH+GF+ K KIL C+C +CSKL S+ K V K + RR +A ++D
Sbjct: 1 HIELAKPVFHIGFLPKVKKILECICIHCSKLKTDDSNAKFA-VARKIRDPKRRLRA-VWD 58
Query: 142 LCKGKNICEGGDEMDINKDGA---ED---PNSLQNK------------------KQGHGG 177
+CK K ICE G+E + + D A ED PN QNK K+ HGG
Sbjct: 59 ICKSKMICEKGEEQENDPDKASYYEDDYIPNG-QNKPIPQRTTTPAEDLGLIKVKKPHGG 117
Query: 178 CGRYQPNIRRSGLDLTAEWKHVNEDSQ---EKKIPLTGKGVLLNKKQGHG----GCGRYQ 230
CG QP +R+ GL L +K + + Q E + LT V K+ G +
Sbjct: 118 CGARQPTVRKDGLKLYTNYKARDSEEQTGQETRQVLTPAQVYSIFKKISSEDLIDLGLNE 177
Query: 231 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGA 290
R + +T ++ T +G DDLTHKLADI+K N L R ES G+
Sbjct: 178 EYARPDWMIVTCLPVPPPPVRPSIQMDGTSRGE--DDLTHKLADILKANQNLRRYESDGS 235
Query: 291 ATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
HV++E +LQFH AT DN+M G P+A+QKSG+PLK+I+ARLKGKEGR+RGNLMGKR
Sbjct: 236 PAHVVSEFESLLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKR 295
Query: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VDFSARTVIT DPN+ +D+VGVP+SIA N+TFPEIVTPFN+D
Sbjct: 296 VDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVD 337
>gi|85000327|ref|XP_954882.1| DNA-directed RNA polymerase II largest subunit [Theileria annulata
strain Ankara]
gi|65303028|emb|CAI75406.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
annulata]
Length = 1678
Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 159/406 (39%), Positives = 225/406 (55%), Gaps = 49/406 (12%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S L+ ++ ++FG+L P+ ++RMSV E I E G P+ GGL D R G D
Sbjct: 12 SPCELKRIRAIEFGLLDPELVKRMSVCE--ITLTELYREGIPQTGGLNDLRMGTTDPRHI 69
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C TC+ ++ CPGHFGHI LAKP++H GF+ +KILRCVCF CSK L++ P+V+ ++
Sbjct: 70 CLTCSMDLKYCPGHFGHIVLAKPMYHYGFMMTVLKILRCVCFNCSKFLLNKEDPRVQ-LI 128
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
LK+ S R + +LC C +D + + GCG QP+
Sbjct: 129 LKSPSSSFRLN-HLSELCSASRTC----RIDTQSNSKIE------------GCGYPQPSY 171
Query: 186 RRSGLDLTAEW--------KHVNEDSQEKKIPLTG-------KGVLLNKKQGHGGC-GRY 229
+ G +L ++ + +E + K PLT +G+ L + G R
Sbjct: 172 TKEGPNLMIQFSQKQRELLEEADEQCNDIKRPLTPEEAFKVLRGITLEDMKCLGFVPERS 231
Query: 230 QP---NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNE 286
QP ++ + A +V S + DDLT KL D++K NN + R++
Sbjct: 232 QPCWLILQVLPVPPPAVRPYVQYGSDRSE----------DDLTLKLLDVLKTNNLIKRHD 281
Query: 287 SSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNL 346
A H+I E ++LQFH+ TL DND+PG+P A +S KP+K+I+ARLKGKEGR+RGNL
Sbjct: 282 KRATAPHIIQEMCQLLQFHITTLFDNDIPGMPIASTRSKKPIKSIRARLKGKEGRLRGNL 341
Query: 347 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
MGKRVDFSARTVIT DPN+ ID +GVP+SIA +TF E V N +
Sbjct: 342 MGKRVDFSARTVITGDPNIPIDTIGVPKSIAMTLTFCETVNSLNYE 387
>gi|358850892|gb|AEU11314.1| RPB1, partial [Glomus deserticola]
Length = 603
Score = 263 bits (673), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 157/345 (45%), Positives = 206/345 (59%), Gaps = 42/345 (12%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPVFH+GF+ K KIL C+C +CSKL + S+ K V + +RR ++D
Sbjct: 1 HIELAKPVFHIGFLPKVKKILECICIHCSKLKIDDSNAKF--AVARKNRDPKRRLRAVWD 58
Query: 142 LCKGKNICEGGDEM----DINKDGAED--PNS-----------------LQNKKQGHGGC 178
+CK K ICE G++ D N D +D PN L K+ HGGC
Sbjct: 59 ICKSKLICEKGEDPENDGDRNSDYEDDYVPNGQSKPIPQRTTTPAEDLGLIKVKKPHGGC 118
Query: 179 GRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV--LLNKKQGHGGCGRYQP-NIRR 235
G QP IR+ GL L +K DS+E+ TG+ +L Q + + +++
Sbjct: 119 GARQPTIRKDGLKLYMNYKF--RDSEEQ----TGQETRQVLTPAQVYSIFKKISSEDLKD 172
Query: 236 SGLD---LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNES 287
GL+ +W + I + G DDLTHKLADI+K N L R ES
Sbjct: 173 LGLNEEYARPDWMIITILPVPPPPVRPSIQMDGTSRGEDDLTHKLADILKANQNLRRYES 232
Query: 288 SGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLM 347
G+ HV++E +LQFH AT DN+M G P+A+QKSG+PLK+I+ARLKGKEGR+RGNLM
Sbjct: 233 DGSPAHVVSEFESLLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLM 292
Query: 348 GKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
GKRVDFSARTVIT DPN+ +D+VGVP+SIA N+TFPEIVTPFN+D
Sbjct: 293 GKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVD 337
>gi|119643847|gb|ABL85590.1| RNA polymerase II largest subunit [Coccocarpia domingensis]
Length = 385
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 158/335 (47%), Positives = 202/335 (60%), Gaps = 33/335 (9%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSP-SHPKVRDVVLKTKGQSR 133
ECPGHFGHI LA PVFHVGF+ K K+L VC C K+LV S+P D L+ + R
Sbjct: 1 ECPGHFGHIXLAVPVFHVGFMXKIKKLLEIVCHNCGKILVDEVSNPAFADA-LRYRDPKR 59
Query: 134 RRQAFIYDLCKGKNICEGGDEMDI-NKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDL 192
R A ++ LCK K CE D N++ ++P K HGGCG QP IRR GL L
Sbjct: 60 RFDA-VWRLCKPKMTCETVTPFDDDNQEKQKEP------KHDHGGCGNRQPEIRREGLKL 112
Query: 193 TAEWK------HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAE 243
WK + E EKK P+T + L + +IR+ GL E
Sbjct: 113 NGTWKPRKGDEEIEEQQLEKK-PITPQMALNIFRHISAD------DIRKMGLSNDYARPE 165
Query: 244 WKHVNEDSQEK-----KIPLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIA 296
W + I + G + DDLT+KL DII+ N + R E+ G+ HV+A
Sbjct: 166 WMIITVLPVPPPPVRPSISVDGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVA 225
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E ++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSAR
Sbjct: 226 EFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSAR 285
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
TVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 286 TVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 320
>gi|124505021|ref|XP_001351252.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
gi|3758846|emb|CAB11131.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
Length = 2457
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 169/427 (39%), Positives = 232/427 (54%), Gaps = 57/427 (13%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S L+ VK+++ G+L P+ I+++SV E I + + G P+ GGL D R G ID +
Sbjct: 10 SACELKRVKRLELGVLDPEIIKKISVCE--IVNVDIYKDGFPREGGLNDIRMGTIDYRTL 67
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C TC N+ CPGHFGHI+LAKP++H GF+ + +LRCVC++C +LL + + KV+ +
Sbjct: 68 CGTCNMNVKYCPGHFGHIELAKPMYHYGFMNVVLNVLRCVCYHCGRLLCNVNSSKVK-YI 126
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDE---MDINKDGAED--PNSLQN---------K 171
K K S R + + +LC G C+ E ++IN + + N L N
Sbjct: 127 EKIKVNSLRLRK-LAELCLGIRACDHSVEEEGLNINDNSLNNFYNNDLSNLNMNQQMLLN 185
Query: 172 KQGHGG-----------CGRYQPNIRRSGLDLTAEWKHVNE-DSQEKKIPLTGKGVL--L 217
K + CG QP R G ++ ++ H +E D E K L+ + L L
Sbjct: 186 KSNYTNIFEMVSKEDVDCGCVQPKYSREGPNMYIQFLHSSEEDIDESKRKLSAEEALEIL 245
Query: 218 NK--KQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPL----------TGKGVLL 265
K K+ G + L LT IP+ G
Sbjct: 246 KKIRKEEMSILGFNSDRCVPASLILTC-------------IPIPPPCARPYVQYGNQRSE 292
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
DDLT KL DI+K N +L R GA +HV+ + +LQFH+ TL DND+PG+P A +S
Sbjct: 293 DDLTLKLLDIVKTNIQLKRQTDRGAKSHVLQDLCSLLQFHITTLFDNDIPGMPIATTRSK 352
Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
KP+KAI+ RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL ID +GVP+S+A +TF E
Sbjct: 353 KPIKAIRTRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNIDYIGVPKSVAMTLTFCET 412
Query: 386 VTPFNMD 392
VTP N D
Sbjct: 413 VTPLNYD 419
>gi|133328|sp|P14248.1|RPB1_PLAFD RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|9943|emb|CAA34560.1| unnamed protein product [Plasmodium falciparum]
Length = 2452
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 169/427 (39%), Positives = 232/427 (54%), Gaps = 57/427 (13%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S L+ VK+++ G+L P+ I+++SV E I + + G P+ GGL D R G ID +
Sbjct: 10 SACELKRVKRLELGVLDPEIIKKISVCE--IVNVDIYKDGFPREGGLNDIRMGTIDYRTL 67
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C TC N+ CPGHFGHI+LAKP++H GF+ + +LRCVC++C +LL + + KV+ +
Sbjct: 68 CGTCNMNVKYCPGHFGHIELAKPMYHYGFMNVVLNVLRCVCYHCGRLLCNVNSSKVK-YI 126
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDE---MDINKDGAED--PNSLQN---------K 171
K K S R + + +LC G C+ E ++IN + + N L N
Sbjct: 127 EKIKVNSLRLRK-LAELCLGIRACDHSVEEEGLNINDNSLNNFYNNDLSNLNMNQQMLLN 185
Query: 172 KQGHGG-----------CGRYQPNIRRSGLDLTAEWKHVNE-DSQEKKIPLTGKGVL--L 217
K + CG QP R G ++ ++ H +E D E K L+ + L L
Sbjct: 186 KSNYTNIFEMVSKEDVDCGCVQPKYSREGPNMYIQFLHSSEEDIDESKRKLSAEEALEIL 245
Query: 218 NK--KQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPL----------TGKGVLL 265
K K+ G + L LT IP+ G
Sbjct: 246 KKIRKEEMSILGFNSDRCVPASLILTC-------------IPIPPPCARPYVQYGNQRSE 292
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
DDLT KL DI+K N +L R GA +HV+ + +LQFH+ TL DND+PG+P A +S
Sbjct: 293 DDLTLKLLDIVKTNIQLKRQTDRGAKSHVLQDLCSLLQFHITTLFDNDIPGMPIATTRSK 352
Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
KP+KAI+ RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL ID +GVP+S+A +TF E
Sbjct: 353 KPIKAIRTRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNIDYIGVPKSVAMTLTFCET 412
Query: 386 VTPFNMD 392
VTP N D
Sbjct: 413 VTPLNYD 419
>gi|221055475|ref|XP_002258876.1| dna-directed rna polymerase ii [Plasmodium knowlesi strain H]
gi|193808946|emb|CAQ39649.1| dna-directed rna polymerase ii, putative [Plasmodium knowlesi
strain H]
Length = 2353
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 165/426 (38%), Positives = 235/426 (55%), Gaps = 53/426 (12%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S L+ VK+++ G+L P+ I+++ V E I + + G P+ GGL D R G ID +
Sbjct: 10 SACELKRVKRLELGVLDPEIIKKIGVCE--IVNVDLYKDGLPREGGLNDIRMGTIDYKTL 67
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C TC N+ CPGHFG+I+LAKP++H GF+ + +LRCVC++C +LL + ++ KV+ +
Sbjct: 68 CGTCNMNVKYCPGHFGYIELAKPMYHYGFMNVVLNVLRCVCYHCGRLLCNMNNSKVK-YI 126
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGG-----DEMDINKDGAE----------------- 163
K K S R + + D+C+G +C+ D + +N + +
Sbjct: 127 EKIKVNSLRLKR-LSDVCQGIKVCDHSSPQEEDSLHLNDNAVDNFYNNNLSNLNVNQQML 185
Query: 164 -DPNSLQN----KKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE-DSQEKKIPLTGKGVL- 216
+PNS N + CG QP R G ++ ++ H +E D E K L+ + L
Sbjct: 186 LNPNSYSNIFEMVNKEDVDCGCVQPKYSREGPNMFIQFLHSSEEDIDESKRKLSAEEALE 245
Query: 217 -LNK--KQGHGGCGRYQPNIRRSGLDLT-------AEWKHVNEDSQEKKIPLTGKGVLLD 266
L K K+ G + L LT +V +Q + D
Sbjct: 246 ILKKIRKEEMPILGFDSDRCIPASLILTFIPIPPPCARPYVQYGNQRSE----------D 295
Query: 267 DLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGK 326
DLT KL DI+K N +L R GA +HV+ + +LQFH+ TL DND+PG+P A +S K
Sbjct: 296 DLTLKLLDIVKTNIQLKRQTDRGAKSHVLQDLCALLQFHITTLFDNDIPGMPIATTRSKK 355
Query: 327 PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIV 386
P+KAI+ RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL ID +GVP+S+A +TF E V
Sbjct: 356 PIKAIRTRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNIDYIGVPKSVAMTLTFCETV 415
Query: 387 TPFNMD 392
TP N D
Sbjct: 416 TPLNYD 421
>gi|358441937|gb|AEU11319.1| RPB1 [Funneliformis caledonium]
Length = 617
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 158/342 (46%), Positives = 204/342 (59%), Gaps = 36/342 (10%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPVFH+GF+ K KIL C+C + SKL S+ K V K + RR +A ++D
Sbjct: 1 HIELAKPVFHIGFLPKVKKILECICIHXSKLKTDDSNAKFA-VARKIRDPKRRLRA-VWD 58
Query: 142 LCKGKNICEGGDEMDINKDGAED------PNSLQNK------------------KQGHGG 177
+CK K ICE G+E + + D A D PN QNK K+ HGG
Sbjct: 59 ICKSKMICEKGEEQENDPDKASDYEDDYIPNG-QNKPIPQRTTTPAEDLGLIKVKKPHGG 117
Query: 178 CGRYQPNIRRSGLDLTAEWKHVNEDSQ---EKKIPLTGKGVLLNKKQGHG----GCGRYQ 230
CG QP +R+ GL L +K + + Q E + LT V K+ G +
Sbjct: 118 CGARQPTVRKDGLKLYTNYKARDSEEQTGQETRQVLTPAQVYSIFKKISSEDLIDLGLNE 177
Query: 231 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGA 290
R + +T ++ T +G DDLTHKLADI+K N L R ES G+
Sbjct: 178 EYARPDWMIVTCLPVPPPPVRPSIQMDGTSRGE--DDLTHKLADILKANQNLRRYESDGS 235
Query: 291 ATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
HV++E +LQFH AT DN+M G P+A+QKSG+PLK+I+ARLKGKEGR+RGNLMGKR
Sbjct: 236 PAHVVSEFESLLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKR 295
Query: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VDFSARTVIT DPN+ +D+VGVP+SIA N+TFPEIVTPFN+D
Sbjct: 296 VDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVD 337
>gi|389583419|dbj|GAB66154.1| DNA-directed RNA polymerase II largest subunit [Plasmodium
cynomolgi strain B]
Length = 2270
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 164/426 (38%), Positives = 235/426 (55%), Gaps = 53/426 (12%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S L+ VK+++ G+L P+ I+++ V E I + + G P+ GGL D R G ID +
Sbjct: 10 SACELKRVKRLELGVLDPEIIKKIGVCE--IVNVDLYKDGLPREGGLNDIRMGTIDYKTL 67
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C TC N+ CPGHFG+I+LAKP++H GF+ + +LRCVC++C +LL + ++ KV+ +
Sbjct: 68 CGTCNMNVKYCPGHFGYIELAKPMYHYGFMNVVLNVLRCVCYHCGRLLCNTTNSKVK-YI 126
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGG-----DEMDINKDGAE----------------- 163
K K S R + + ++C+G +C+ D + +N + +
Sbjct: 127 EKIKVNSLRLKR-LSEVCQGIKVCDHSSPQEEDTLHLNDNSLDNFYNNNLSNLNMNQQML 185
Query: 164 -DPNSLQN----KKQGHGGCGRYQPNIRRSGLDLTAEWKHV-NEDSQEKKIPLTGKGVL- 216
+PNS N + CG QP R G ++ ++ H +ED E K L+ + L
Sbjct: 186 LNPNSYSNIFEMVNKEDVDCGCVQPKYSREGPNMFIQFLHSSDEDIDESKRKLSAEEALE 245
Query: 217 -LNK--KQGHGGCGRYQPNIRRSGLDLT-------AEWKHVNEDSQEKKIPLTGKGVLLD 266
L K K+ G + L LT +V +Q + D
Sbjct: 246 ILKKIRKEEMPILGFNSDRCIPASLILTFIPIPPPCARPYVQYGNQRSE----------D 295
Query: 267 DLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGK 326
DLT KL DI+K N +L R GA +HV+ + +LQFH+ TL DND+PG+P A +S K
Sbjct: 296 DLTLKLLDIVKTNIQLKRQTDRGAKSHVLQDLCALLQFHITTLFDNDIPGMPIATTRSKK 355
Query: 327 PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIV 386
P+KAI+ RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL ID +GVP+S+A +TF E V
Sbjct: 356 PIKAIRTRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNIDYIGVPKSVAMTLTFCETV 415
Query: 387 TPFNMD 392
TP N D
Sbjct: 416 TPLNYD 421
>gi|362412142|gb|AEW12838.1| RPB1 [Smittium simulii]
Length = 419
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 155/338 (45%), Positives = 203/338 (60%), Gaps = 41/338 (12%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PV+H GF+ K K+L CVC+YCSKL V S+P+ V + S RR I+D
Sbjct: 1 HIELARPVYHPGFIVKVKKVLECVCWYCSKLKVDGSNPEF--VAAQKVTNSNRRLKLIWD 58
Query: 142 LCKGKNICEG-------GDEMDINKDGAEDPNSL------QNKKQGHGGCGRYQPNIRRS 188
LC+ + +CE G+ D+N+ AE +L + +GHGGCG QP IR+
Sbjct: 59 LCQSRTVCEASEPEDRAGNNEDLNE--AEKSRNLIDGIIGSKRSRGHGGCGHKQPVIRKE 116
Query: 189 GLDLTAEWKHVNEDSQEKKIPLTGKGVL--------LNKKQGHGGCGR-YQPNIRRSGLD 239
GL LTA +KH S E+ +P GK L L K P++ R
Sbjct: 117 GLKLTAAFKH---SSGEEGVP-EGKHFLSVLQVLQVLKKITDEDAISMGLNPSLAR---- 168
Query: 240 LTAEW-----KHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V + I + DDLT+KL DI+K N + E GA H+
Sbjct: 169 --PEWFIMTVMPVPPLAVRPSIQMDATRQSEDDLTYKLNDILKANIRVQSCEVEGAPLHI 226
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I E +LQFHVAT +N++ GLP+A+QKSG+P+K+I+ARLKGK GR+RGNLMGKRVDFS
Sbjct: 227 IEEFESLLQFHVATFMNNEISGLPQALQKSGRPIKSIRARLKGKGGRVRGNLMGKRVDFS 286
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVIT DPN+ IDQVGVPRSIA+NMTFPE+VTP+N++
Sbjct: 287 ARTVITGDPNIDIDQVGVPRSIARNMTFPEVVTPYNIE 324
>gi|156096993|ref|XP_001614530.1| DNA-directed RNA polymerase II largest subunit [Plasmodium vivax
Sal-1]
gi|148803404|gb|EDL44803.1| DNA-directed RNA polymerase II largest subunit, putative
[Plasmodium vivax]
Length = 2379
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 164/426 (38%), Positives = 234/426 (54%), Gaps = 53/426 (12%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S L+ VK+++ G+L P+ I+++ V E I + + G P+ GGL D R G ID +
Sbjct: 10 SACELKRVKRLELGVLDPEIIKKIGVCE--IVNVDLYKDGLPREGGLNDIRMGTIDYKTL 67
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C TC N+ CPGHFG+I+LAKP++H GF+ + +LRCVC++C +LL + S+ KV+ +
Sbjct: 68 CGTCNMNVKYCPGHFGYIELAKPMYHYGFMNVVLNVLRCVCYHCGRLLCNTSNSKVK-FI 126
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGD-----------------------EMDINKDGA 162
K K S R + + ++C+G +C+ +++N+
Sbjct: 127 EKIKVNSLRLKR-LSEVCQGIKVCDHSSPQEEDTLHLNDNSVDNFYNNDLSNLNVNQQML 185
Query: 163 EDPNSLQN----KKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE-DSQEKKIPLTGKGVL- 216
+PNS N + CG QP R G ++ ++ H +E D E K L+ + L
Sbjct: 186 LNPNSYGNIFEIVNKEDVDCGCVQPKYSREGPNMFIQFLHSSEEDIDESKRKLSAEEALD 245
Query: 217 -LNK--KQGHGGCGRYQPNIRRSGLDLT-------AEWKHVNEDSQEKKIPLTGKGVLLD 266
L K K+ G + L LT +V +Q + D
Sbjct: 246 ILKKIRKEEMPILGFNSDRCIPASLILTFIPIPPPCARPYVQYGNQRSE----------D 295
Query: 267 DLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGK 326
DLT KL DI+K N +L R GA +HV+ + +LQFH+ TL DND+PG+P A +S K
Sbjct: 296 DLTLKLLDIVKTNIQLKRQTDRGAKSHVLQDLCALLQFHITTLFDNDIPGMPIATTRSKK 355
Query: 327 PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIV 386
P+KAI+ RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL ID +GVP+S+A +TF E V
Sbjct: 356 PIKAIRTRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNIDYIGVPKSVAMTLTFCETV 415
Query: 387 TPFNMD 392
TP N D
Sbjct: 416 TPLNYD 421
>gi|428180807|gb|EKX49673.1| Rpb1, RNA polymerase II largest subunit [Guillardia theta CCMP2712]
Length = 1473
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 160/389 (41%), Positives = 224/389 (57%), Gaps = 26/389 (6%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSS-RCQTCA 70
VK VQFGILSPD+I+ SV E +K E + G+PK GLMDP GV R++ +C TC
Sbjct: 19 VKCVQFGILSPDDIKNFSVAE--VKTIEKFDAQGKPKTAGLMDPHLGVPPRAAYKCATCH 76
Query: 71 GNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKG 130
G+ CPGHFGHI+LA+PV+H GF+T KIL CVC C L+V R L+ K
Sbjct: 77 GSDETCPGHFGHINLAEPVYHCGFLTMLQKILGCVCHQCGMLMVDERDIHFRSA-LRLKH 135
Query: 131 QSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGL 190
R A I +CK K C + MD +++ Q GCG P+I R+GL
Sbjct: 136 PQARLNA-IASICKSKKKC-SHEAMD------------KSETQVDRGCGAPHPSILRAGL 181
Query: 191 DLTAEW------KHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEW 244
+ ++ +HV+E Q ++ + + + ++ C + + R + D
Sbjct: 182 NFKVKYPTVSAEEHVDESLQGERELFADEALAILRRITDEDCEKLGLDPRFARPDWMIVQ 241
Query: 245 KHVNEDSQEKKIPLTGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
+ +T G DD+T KL D+IK NN L + + SGA E+ +LQ
Sbjct: 242 VVAVSPPHVRPAIMTDSGSRGEDDITFKLGDVIKANNHLKQLKESGAPPSQRRESQMLLQ 301
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
+H+AT+ +N++ G P+A ++GK +K+++ R+KGKEGR+RGNLMGKRVDFSARTVIT DP
Sbjct: 302 YHLATMYNNELAGQPQAQHRNGKAIKSLRQRIKGKEGRVRGNLMGKRVDFSARTVITGDP 361
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+ DQVGVPRSIA NMTFPEIV+ N++
Sbjct: 362 TISCDQVGVPRSIAYNMTFPEIVSIHNIE 390
>gi|362412165|gb|AEW12846.1| RPB1 [Zancudomyces culisetae]
Length = 421
Score = 260 bits (665), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 148/335 (44%), Positives = 205/335 (61%), Gaps = 33/335 (9%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PVFH GFVTK KIL CVC+YCSKL + + +V + + S RR ++D
Sbjct: 1 HIELARPVFHPGFVTKIKKILECVCWYCSKLKIDET--EVAYQMAQKVKNSNRRLKLVWD 58
Query: 142 LCKGKNICEG---GDEMDIN---------KDGAEDPNSLQNKKQGHGGCGRYQPNIRRSG 189
+CK + +CE DE +IN ++ E + K GHGGCG QP R+ G
Sbjct: 59 VCKSRMVCEASVEADEREINISRADEDLRREEVEGMLGTKRKALGHGGCGHKQPTFRKDG 118
Query: 190 LDLTAEWKHV----NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTA 242
L LTA +K V ED++ K++ + + + KK ++R G++
Sbjct: 119 LKLTATFKRVALSGGEDTEGKQVLTVLQVLQVLKKIS-------DTDVRAIGMNPEYARP 171
Query: 243 EWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
EW ++ I + DDLT+KL DI+K N + E GA H+I E
Sbjct: 172 EWLIISVMPVPPMCVRPSIQMDATRHSEDDLTYKLNDILKANARVRSCEVEGAPQHIIDE 231
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
+LQFHVAT +ND+ G+P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSART
Sbjct: 232 FETLLQFHVATFINNDISGIPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSART 291
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VI+ DPNL IDQVGVP++IA+N+T+PE+VTP+N+D
Sbjct: 292 VISGDPNLEIDQVGVPKAIAKNLTYPEVVTPYNID 326
>gi|120561211|gb|ABM26991.1| RNA polymerase II largest subunit, partial [Zancudomyces culisetae]
Length = 1025
Score = 260 bits (664), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 148/335 (44%), Positives = 205/335 (61%), Gaps = 33/335 (9%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PVFH GFVTK KIL CVC+YCSKL + + +V + + S RR ++D
Sbjct: 1 HIELARPVFHPGFVTKIKKILECVCWYCSKLKIDET--EVAYQMAQKVKNSNRRLKLVWD 58
Query: 142 LCKGKNICEG---GDEMDIN---------KDGAEDPNSLQNKKQGHGGCGRYQPNIRRSG 189
+CK + +CE DE +IN ++ E + K GHGGCG QP R+ G
Sbjct: 59 VCKSRMVCEASVEADEREINISRADEDLRREEVEGMLGTKRKALGHGGCGHKQPTFRKDG 118
Query: 190 LDLTAEWKHV----NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTA 242
L LTA +K V ED++ K++ + + + KK ++R G++
Sbjct: 119 LKLTATFKGVALSGGEDTEGKQVLTVLQVLQVLKKIS-------DTDVRAIGMNPEYARP 171
Query: 243 EWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
EW ++ I + DDLT+KL DI+K N + E GA H+I E
Sbjct: 172 EWLIISVMPVPPMCVRPSIQMDATRHSEDDLTYKLNDILKANARVRSCEVEGAPQHIIDE 231
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
+LQFHVAT +ND+ G+P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSART
Sbjct: 232 FETLLQFHVATFINNDISGIPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSART 291
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VI+ DPNL IDQVGVP++IA+N+T+PE+VTP+N+D
Sbjct: 292 VISGDPNLEIDQVGVPKAIAKNLTYPEVVTPYNID 326
>gi|362412174|gb|AEW12848.1| RPB1 [Zancudomyces culisetae]
Length = 421
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 148/335 (44%), Positives = 205/335 (61%), Gaps = 33/335 (9%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PVFH GFVTK KIL CVC+YCSKL + + +V + + S RR ++D
Sbjct: 1 HIELARPVFHPGFVTKIKKILECVCWYCSKLKIDET--EVAYQMAQKVKNSNRRLKLVWD 58
Query: 142 LCKGKNICEG---GDEMDIN---------KDGAEDPNSLQNKKQGHGGCGRYQPNIRRSG 189
+CK + +CE DE +IN ++ E + K GHGGCG QP R+ G
Sbjct: 59 VCKSRMVCEASVEADEREINISRADEDLRREEVEGMLGTKRKALGHGGCGHKQPTFRKDG 118
Query: 190 LDLTAEWKHV----NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTA 242
L LTA +K V ED++ K++ + + + KK ++R G++
Sbjct: 119 LKLTATFKGVALSGGEDTEGKQVLTVLQVLQVLKKIS-------DTDVRAIGMNPEYARP 171
Query: 243 EWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
EW ++ I + DDLT+KL DI+K N + E GA H+I E
Sbjct: 172 EWLIISVMPVPPMCVRPSIQMDATRHSEDDLTYKLNDILKANARVRSCEVEGAPQHIIDE 231
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
+LQFHVAT +ND+ G+P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSART
Sbjct: 232 FETLLQFHVATFINNDISGIPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSART 291
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VI+ DPNL IDQVGVP++IA+N+T+PE+VTP+N+D
Sbjct: 292 VISGDPNLEIDQVGVPKAIAKNLTYPEVVTPYNID 326
>gi|113957534|gb|ABI49121.1| RNA polymerase II largest subunit [Pyxine subcinerea]
Length = 1015
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 148/327 (45%), Positives = 190/327 (58%), Gaps = 18/327 (5%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA PVFH GF++K K+L VC C K+LV S+P +D L+ + +R
Sbjct: 1 ECPGHFGHIELAVPVFHTGFISKIKKLLEMVCHNCGKILVDDSNPAFKDA-LRIRDPKKR 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQ-NKKQGHGGCGRYQPNIRRSGLDLT 193
A I+ LCK K ICE D +D LQ + GHGGCG QP +R+ GL L
Sbjct: 60 FDA-IWRLCKTKMICETTIPQD------DDSKDLQKDLGPGHGGCGNVQPEVRKDGLKLI 112
Query: 194 AEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHG----GCGRYQPNIRRSGLDLTAEW 244
WK E Q +K P+T + L + G R + +T
Sbjct: 113 GTWKAQKGDDETEAQQPEKKPITPQMALNIFRHMSAEDVKNIGLSNDYARPEWMIITVLP 172
Query: 245 KHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQF 304
K DDLT+KL DII+ N + R E G H+I E +LQF
Sbjct: 173 VPPPPVRPSIKTDAGDGPAGEDDLTYKLGDIIRANGNVRRGEVEGTPAHIIEEFETLLQF 232
Query: 305 HVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
HVAT ND G P+A+QKSG+P+KAI++RL+GKEGR+RGNLMGKRVDFSARTVIT DPN
Sbjct: 233 HVATYMANDTAGQPQALQKSGRPVKAIRSRLEGKEGRVRGNLMGKRVDFSARTVITGDPN 292
Query: 365 LRIDQVGVPRSIAQNMTFPEIVTPFNM 391
+ +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 293 ISLDEVGVPRSIARTLTYPETVTPYNI 319
>gi|110669650|gb|ABG81919.1| RNA polymerase II largest subunit, partial [Lichinella iodopulchra]
Length = 1020
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 152/331 (45%), Positives = 197/331 (59%), Gaps = 19/331 (5%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA PVFHVGF+TK K+L VC C K+LV S+P+ + L+ + +R
Sbjct: 1 ECPGHFGHIELATPVFHVGFMTKIKKLLETVCHNCGKVLVDESNPQFANA-LRYRDPKKR 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN---KKQGHGGCGRYQPNIRRSGLD 191
A I+ +CK K IC D D ED + L KK HGGCG QP++RR GL
Sbjct: 60 FDA-IWRICKPKLIC---DSDQPQTDFPEDSDILSKAGMKKPSHGGCGNAQPDVRREGLK 115
Query: 192 LTAEWKHVNEDSQE------KKIPLTGKGVL----LNKKQGHGGCGRYQPNIRRSGLDLT 241
L WK D E +K P+T + L L G R + LT
Sbjct: 116 LWGTWKMKKTDDDEHQGAITEKRPITPQMALNIFRLITTDELRMIGLSNDYARPEWMILT 175
Query: 242 AEWKHVNEDSQEKKIPLTGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
+ + +G DDLT+KL DII+ N + R E G+ HV E +
Sbjct: 176 VLPVPPPPVRPSISVDGSSQGPRGEDDLTYKLGDIIRANGNVRRCEQDGSPAHVATEFEQ 235
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
+LQFHVAT DND+ G P+A+QKSG+P+K+I++RLKGKEGR+RGNLMGKRVDFS+RTVIT
Sbjct: 236 LLQFHVATYMDNDIAGQPQALQKSGRPIKSIRSRLKGKEGRLRGNLMGKRVDFSSRTVIT 295
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DPNL +D+VGVP SIA+ +T+PE VTP+N+
Sbjct: 296 GDPNLSLDEVGVPISIAKILTYPETVTPYNI 326
>gi|362412163|gb|AEW12845.1| RPB1 [Zancudomyces culisetae]
Length = 417
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 148/335 (44%), Positives = 205/335 (61%), Gaps = 33/335 (9%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PVFH GFVTK KIL CVC+YCSKL + + +V + + S RR ++D
Sbjct: 1 HIELARPVFHPGFVTKIKKILECVCWYCSKLKIDET--EVAYQMAQKVKNSNRRLKLVWD 58
Query: 142 LCKGKNICEG---GDEMDIN---------KDGAEDPNSLQNKKQGHGGCGRYQPNIRRSG 189
+CK + +CE DE +IN ++ E + K GHGGCG QP R+ G
Sbjct: 59 VCKSRMVCEASVEADEREINISRADEDLRREEVEGMLGTKRKALGHGGCGHKQPTFRKDG 118
Query: 190 LDLTAEWKHV----NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTA 242
L LTA +K V ED++ K++ + + + KK ++R G++
Sbjct: 119 LKLTATFKGVALSGGEDTEGKQVLTVLQVLQVLKKIS-------DTDVRAIGMNPEYARP 171
Query: 243 EWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
EW ++ I + DDLT+KL DI+K N + E GA H+I E
Sbjct: 172 EWLIISVMPVPPMCVRPSIQMDATRHSEDDLTYKLNDILKANARVRSCEVEGAPQHIIDE 231
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
+LQFHVAT +ND+ G+P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSART
Sbjct: 232 FETLLQFHVATFINNDISGIPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSART 291
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VI+ DPNL IDQVGVP++IA+N+T+PE+VTP+N+D
Sbjct: 292 VISGDPNLEIDQVGVPKAIAKNLTYPEVVTPYNID 326
>gi|120561233|gb|ABM27002.1| RNA polymerase II largest subunit, partial [Entophlyctis
confervae-glomeratae]
Length = 1013
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 149/331 (45%), Positives = 200/331 (60%), Gaps = 40/331 (12%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HIDLAKPV+H G + K K+L CVCF+C KL V ++P+ + + K ++R+ + ++
Sbjct: 1 HIDLAKPVYHAGLIKKVKKVLECVCFHCGKLKVDYTNPRF-NALQKLSNRARKFEE-VWA 58
Query: 142 LCKGKNICEGG----DEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSG-LDLTAEW 196
+CK K ICEG DE+D+ DP + KK HGGCG QP ++ G L L+ +
Sbjct: 59 ICKTKMICEGAELEDDEIDL------DP--FKAKKSNHGGCGGRQPVFKKEGPLSLSTHY 110
Query: 197 KHVNEDSQ-----EKKIPLTGKGV-LLNKKQGHGGCGRYQPNIRRSGLDLTAEWKH---- 246
K ++ + K PLT V L +K C G+ L +W
Sbjct: 111 KATKDEVEGGADPTKIAPLTADKVHQLFQKISDADC---------LGMGLNPQWARPEWM 161
Query: 247 ------VNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + + + G DDLTHKL DI+ N +L +E+ GA H+I E
Sbjct: 162 IISVLPVPPMAVRPAVSMDGVATNQDDLTHKLRDIVLTNQQLRTHETDGAPAHIITEFEN 221
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
+LQ+HVAT DND+ G+P A+QKSG+PLK+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 222 LLQYHVATYMDNDIAGIPAALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVIT 281
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DP+L IDQVGVPRSIA+N+TFPE VTP+N+
Sbjct: 282 GDPHLSIDQVGVPRSIARNLTFPETVTPYNI 312
>gi|83320428|gb|ABC02841.1| RNA polymerase II largest subunit, partial [Spizellomyces
punctatus]
Length = 792
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 151/327 (46%), Positives = 200/327 (61%), Gaps = 30/327 (9%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV-VLKTKGQSRRRQAFIY 140
HIDLAKPV+H GF++K KIL CVCF+C KL ++ + R ++K K +RR ++
Sbjct: 1 HIDLAKPVYHAGFISKIKKILECVCFHCGKLKTGHNNERFRQARIIKDK---KRRFHAVW 57
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSG-LDLTAEWKHV 199
++CK K +CEG D + D + + ++K HGGCG QP ++ G L L WK
Sbjct: 58 EICKTKMVCEGSDTAPDDDDMMDMEDPYKSKPT-HGGCGGRQPIFKKEGPLQLATYWKAT 116
Query: 200 ---NEDSQEKKI-PLTGKGV-LLNKKQGHGGCGRYQPNIRRSGLDLTAEWKH-------- 246
E QE K PLT + V L +K C L L +W
Sbjct: 117 KDEEESGQEPKTEPLTAEKVHQLFQKISEDDC---------MSLGLNPDWARPEWMIITV 167
Query: 247 --VNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQF 304
V + + + G DDLTHKL DI+ N+ L ++E+ G+ HVI E K+LQ+
Sbjct: 168 LPVPPMAVRPAVSMDGVATNQDDLTHKLRDIVLANSFLRKHETEGSPAHVINEFEKLLQY 227
Query: 305 HVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
H+AT DND+ GLP ++QKSG+PLK+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPN
Sbjct: 228 HIATYMDNDIAGLPPSLQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPN 287
Query: 365 LRIDQVGVPRSIAQNMTFPEIVTPFNM 391
L ID+VGVPRSIA+N+TFPE VTP+N+
Sbjct: 288 LSIDEVGVPRSIARNLTFPETVTPYNI 314
>gi|38091170|emb|CAE46439.1| RNA polymerase II largest subunit [Cercomonas sp. ATCC 50318]
Length = 417
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 147/328 (44%), Positives = 198/328 (60%), Gaps = 24/328 (7%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGH++LAKP+ H+ F+ +K+LRCVC++CS LLVS + + D + Q ++
Sbjct: 1 ECPGHFGHLELAKPIIHISFLPTILKLLRCVCYHCSALLVSRDNRRYADT--QKLRQPKK 58
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
R A + ++C+ C GG EMD D D N +K+ GCG PN RR G+ +
Sbjct: 59 RLAAVLEICRSAKECNGGFEMD---DSLLDDNKEAERKK-RTGCGSTLPNYRRDGIKIIV 114
Query: 195 EW-KHVNEDSQ--EKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNED 250
E+ +V D KK K + + C R GLD + A
Sbjct: 115 EFPDNVQFDGSVDRKKFLSPSKIYDIFRNISDEDC-------RALGLDPVNARPDWFLLT 167
Query: 251 SQEKKIPLTGKGVLLD-------DLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
P V+ D DLT+KL+DI+K N +L + E+ GAA H++ ++ +LQ
Sbjct: 168 VLPVPPPPVRPSVMFDSATRASDDLTYKLSDIVKVNEQLKKQEAQGAAEHILQDSADVLQ 227
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
FHVATL DN++ GLPR+ Q+SGKP+K+I+ RL GK GRIRGNLMGKRVDFSARTVIT DP
Sbjct: 228 FHVATLFDNEISGLPRSTQRSGKPIKSIRQRLVGKGGRIRGNLMGKRVDFSARTVITGDP 287
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
NL +DQVGVPRS+A N+TFPE+VT FN+
Sbjct: 288 NLSVDQVGVPRSMATNLTFPEMVTRFNI 315
>gi|188532151|gb|ACD63087.1| RNA polymerase II largest subunit [Nicotiana tabacum]
Length = 1010
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 144/324 (44%), Positives = 196/324 (60%), Gaps = 22/324 (6%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP+FH+GF+ + ILRCVCF CSK+L PK + + ++R ++ + D
Sbjct: 1 HLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEEDPKFKQAMRIRNPKNRLKK--MLD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
CK K CEGGDE+D+ + E P K+ GGCG QP I G+ + AE+K +
Sbjct: 59 ACKNKTKCEGGDEIDVRGEEPEAP-----VKKSRGGCGAQQPKISIDGMKMVAEYKLQKK 113
Query: 202 DSQ---------EKKIPLTGKGVL-LNKKQGHGGC---GRYQPNIRRSGLDLTAEWKHVN 248
S E+K L+ + VL + K+ C G R + L A
Sbjct: 114 KSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEYARPDWMILQALPIPPP 173
Query: 249 EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVAT 308
+ + + DDLTH+LA II+ N L R E +GA H+I+E ++LQFH+AT
Sbjct: 174 PVRPSVMMDTSSRSE--DDLTHQLAMIIRHNENLKRQERNGAPAHIISEFAQLLQFHIAT 231
Query: 309 LTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
DND+PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + ID
Sbjct: 232 YFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSARTVITPDPTINID 291
Query: 369 QVGVPRSIAQNMTFPEIVTPFNMD 392
Q+GVP SIA N+T+PE VTP+N++
Sbjct: 292 QLGVPWSIALNLTYPETVTPYNIE 315
>gi|362412171|gb|AEW12847.1| RPB1 [Zancudomyces culisetae]
Length = 417
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 149/335 (44%), Positives = 207/335 (61%), Gaps = 33/335 (9%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PVFH GFVTK KIL CVC+YCSKL + + +V + + S RR ++D
Sbjct: 1 HIELARPVFHPGFVTKIKKILECVCWYCSKLKIDET--EVAYQMAQKVKNSNRRLKLVWD 58
Query: 142 LCKGKNICEG---GDEMDIN---------KDGAEDPNSLQNKKQGHGGCGRYQPNIRRSG 189
+CK + +CE DE +IN ++ E + K GHGGCG QP R+ G
Sbjct: 59 VCKSRMVCEASVEADEREINISRADEDLRREEVEGMLGTKRKALGHGGCGHKQPTFRKDG 118
Query: 190 LDLTAEWKHV----NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTA 242
L LTA +K V ED++ K++ + +L+ KK ++R G++
Sbjct: 119 LKLTATFKGVALSGGEDTEGKQVLTVLQVLLVLKKIS-------DTDVRAIGMNPEYARP 171
Query: 243 EWKHVNEDS-----QEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
EW ++ + I + DDLT+KL DI+K N + E GA H+I E
Sbjct: 172 EWLIISVIAVPPMCVRPSIQMDATRHSEDDLTYKLNDILKANARVRSCEVEGAPQHIIDE 231
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
+LQFHVAT +ND+ G+P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSART
Sbjct: 232 FETLLQFHVATFINNDISGIPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSART 291
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VI+ DPNL IDQVGVP++IA+N+T+PE+VTP+N+D
Sbjct: 292 VISGDPNLEIDQVGVPKAIAKNLTYPEVVTPYNID 326
>gi|83320412|gb|ABC02833.1| RNA polymerase II largest subunit, partial [Allomyces arbuscula]
Length = 739
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 151/320 (47%), Positives = 200/320 (62%), Gaps = 23/320 (7%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LA+PV+HV F+ + K+L CVCF+CSKLLV P++P + + K ++RR + ++
Sbjct: 1 HVELARPVYHVSFLPRVKKVLECVCFHCSKLLVDPNNPLFQKA-RRIKDRNRRFKE-VHK 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
LCK + C+ DE K+G EDP+ L GCG QP IR+ L L ++K N
Sbjct: 59 LCKTRTECKAADE---PKEG-EDPD-LPAGYIPASGCGEKQPAIRKKNLTLYVQFKQANS 113
Query: 202 DSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK--- 254
+S+E K L+ VL + KK C GLD EW +
Sbjct: 114 NSEEGKQELSPSQVLQILKKISDEDC-------ESMGLDPVFARPEWMILTVLPVPPPPV 166
Query: 255 --KIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDN 312
I + G DDLT KL DIIK N L + E+ G H I ++ +LQFHVAT DN
Sbjct: 167 RPSILVDGTSRGEDDLTFKLCDIIKANAFLQKAEADGVPGHRIKDHEDLLQFHVATFVDN 226
Query: 313 DMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGV 372
++ G PRAMQ+SG+P+KAI++RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL IDQVGV
Sbjct: 227 EISGTPRAMQRSGRPIKAIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVGV 286
Query: 373 PRSIAQNMTFPEIVTPFNMD 392
PRSIA+N+T+PEIVTP+N++
Sbjct: 287 PRSIARNLTYPEIVTPYNIN 306
>gi|45935331|gb|AAS79687.1| RNA polymerase II large subunit [Ginkgo biloba]
Length = 1013
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 145/325 (44%), Positives = 198/325 (60%), Gaps = 21/325 (6%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP++H+GF+ + ILRCVCF CS++L + + + + R R+ + D
Sbjct: 1 HLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHRFKQALKIRNPKHRLRK--VLD 58
Query: 142 LCKGKNICEGGDEMDINK--DGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-- 197
CK K CEGGDE+D ++ DG E KK+ HGGCG QP I G+ + AE+K
Sbjct: 59 CCKNKTKCEGGDEIDDDQGQDGEE-----AAKKKRHGGCGAQQPKISIDGMKMVAEYKLP 113
Query: 198 HVNEDSQEKKIP--------LTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHV 247
D QE+ +P LT + VL + K+ C N + + D + + +
Sbjct: 114 RKKADEQEQLMPEPIERKQQLTAEKVLSVLKRISDEECQLLGLNPKYARPDWMILQVLPI 173
Query: 248 NEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVA 307
+ + DDLTH+LA II+ N L R E +GA H+I E ++LQFH+A
Sbjct: 174 PPPPVRPSVMMDTTSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIITEFAQLLQFHIA 233
Query: 308 TLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRI 367
T DND+PG PRA Q+SG+P+K+I RLK KEGRIRGNLMGKRVDFSARTVITPDPN+ I
Sbjct: 234 TYFDNDLPGQPRATQRSGRPIKSICNRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINI 293
Query: 368 DQVGVPRSIAQNMTFPEIVTPFNMD 392
DQ+GVP SIA N+T+PE VTP+N++
Sbjct: 294 DQLGVPWSIALNLTYPETVTPYNIE 318
>gi|33326211|gb|AAQ08515.1| RNA polymerase II largest subunit [Zea mays]
Length = 1009
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 199/322 (61%), Gaps = 19/322 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP+FH+GF+ + I+RCVCF CSK+L K + + ++R ++ IYD
Sbjct: 1 HLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETKFKQALKIRNPKNRLKR--IYD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
CK K +C GGD++D+ + ++P + GGCG QPNI G+ + AE+K +
Sbjct: 59 ACKSKKVCAGGDDLDVQEQDTDEP------IKKRGGCGAQQPNITVDGMKMVAEFKAPKK 112
Query: 202 --DSQ-------EKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNED 250
D Q E+K L+ + VL + K+ C N + + D + + V
Sbjct: 113 KTDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYARPDWMILQVLPVPPP 172
Query: 251 SQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
+ + DDLTH+LA II+ N L R E +GA H+I E ++LQFH+AT
Sbjct: 173 PVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYF 232
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DND+PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDPN+ ID++
Sbjct: 233 DNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDEL 292
Query: 371 GVPRSIAQNMTFPEIVTPFNMD 392
GVP SIA N+T+PE VTP+N++
Sbjct: 293 GVPWSIALNLTYPETVTPYNIE 314
>gi|290984021|ref|XP_002674726.1| RNA polymerase II largest subunit [Naegleria gruberi]
gi|284088318|gb|EFC41982.1| RNA polymerase II largest subunit [Naegleria gruberi]
Length = 1650
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 157/405 (38%), Positives = 224/405 (55%), Gaps = 57/405 (14%)
Query: 2 AMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVID 61
A S L + ++QFGIL+P + +MS E I ET E G PK GGLMD R G ++
Sbjct: 4 AFTYSPVDLSSIDRIQFGILNPHVVEKMSACE--IIHAETEEKGLPKEGGLMDLRMGTVN 61
Query: 62 RSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKV 121
+ C TC ++ECPGHFGH+++ P F++ F+ +KIL+C C +CS+LL + + P+
Sbjct: 62 SALSCMTCGCGVSECPGHFGHVNI-HPTFNILFLKTIVKILKCTCVHCSRLLFNRNTPEF 120
Query: 122 RDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRY 181
+ + + R+R + L K + C D + GCG
Sbjct: 121 KRI--QQIANKRKRFNELMKL-KPMDKCMIDD---------------------YTGCGGI 156
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
QP I ++ L +T + + NE QE K + VL K+ I L+L
Sbjct: 157 QPKISKNQLSITQIFPNSNEIKQEIK----AESVLQIFKR-----------ISTQDLELL 201
Query: 242 AEWKHVNEDSQEKKI-------PLTGKGVLL-------DDLTHKLADIIKCNNELIRNES 287
+ +N + + + P V+ DDLTHKLADIIK N + +
Sbjct: 202 G-FDSINSNPEWMILTCLPVPPPHVRPSVMHGLNDKAEDDLTHKLADIIKSNATIQKLSK 260
Query: 288 SGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLM 347
SG+ H + + IK+LQ+H AT +N++ G+P + K+G+ LK+++ RLKGKEGR+RGNLM
Sbjct: 261 SGSPQHYLDDMIKILQYHCATYMNNEISGVPMSTTKNGRMLKSLRQRLKGKEGRVRGNLM 320
Query: 348 GKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
GKRVDFSARTVITPDP + IDQVGVPR+IA+NMT PE VTPFN +
Sbjct: 321 GKRVDFSARTVITPDPTIEIDQVGVPRTIARNMTVPEKVTPFNFE 365
>gi|188532155|gb|ACD63089.1| RNA polymerase II largest subunit [Persea americana]
Length = 1009
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 139/321 (43%), Positives = 198/321 (61%), Gaps = 17/321 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP+FH+GF+ + I+RCVCF CSK+LV K + + R ++ F D
Sbjct: 1 HLELAKPMFHIGFMKTVLTIMRCVCFNCSKILVDXDDLKFKQSQKIRNPKHRLKRVF--D 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
CK K CEGGDEMD+ G+E+P K+ GGCG QP + G+ + AE+K +
Sbjct: 59 ACKNKQKCEGGDEMDVQGQGSEEP-----VKKSRGGCGAQQPKLTIEGMKMIAEYKGSRK 113
Query: 202 DSQEKKIP--------LTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDS 251
+ E+ +P L+ + VL + K+ C N + + D + + +
Sbjct: 114 KNDEEPLPEPVERKQQLSAERVLSVLKRISDEDCMLLGLNPKYARPDWMILQVLPIPPPP 173
Query: 252 QEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
+ + DDLTH+LA II+ N L + E +GA H+I+E ++LQFH+AT D
Sbjct: 174 VRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRKQERNGAPAHIISEFAQLLQFHIATYFD 233
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
N++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + ID++G
Sbjct: 234 NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELG 293
Query: 372 VPRSIAQNMTFPEIVTPFNMD 392
VP SIA N+T+PE VTP+N++
Sbjct: 294 VPWSIALNLTYPETVTPYNIE 314
>gi|520513|gb|AAA50227.1| RNA polymerase II, largest subunit, partial [Helobdella stagnalis]
Length = 1337
Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 132/218 (60%), Positives = 152/218 (69%), Gaps = 50/218 (22%)
Query: 225 GCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-------------------- 264
GCGR+QP IRR+ L+LTAEWK +N+D+QEKK+ LT + VL
Sbjct: 90 GCGRHQPKIRRNLLELTAEWKQINDDNQEKKMILTAERVLEIFKAITDETCTILGMDPKY 149
Query: 265 ------------------------------LDDLTHKLADIIKCNNELIRNESSGAATHV 294
DDLTHKLADIIK NN+L RNE +GAA H+
Sbjct: 150 ARPDWLIATMLPVPPLPVRPAVVMFGSAKNQDDLTHKLADIIKINNQLKRNEMNGAAAHI 209
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
+AE+ KMLQFHVAT+ DN+MPGLPRA QKSG+PLK+IK RLKGKEGRIRGNLMGKRVDFS
Sbjct: 210 LAEDTKMLQFHVATMIDNEMPGLPRATQKSGRPLKSIKQRLKGKEGRIRGNLMGKRVDFS 269
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVITPDP LRIDQVGVPRSIAQN+TFPEIVTPFN++
Sbjct: 270 ARTVITPDPMLRIDQVGVPRSIAQNLTFPEIVTPFNIE 307
>gi|362412151|gb|AEW12841.1| RPB1 [Smittium orthocladii]
Length = 419
Score = 257 bits (656), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 149/332 (44%), Positives = 201/332 (60%), Gaps = 29/332 (8%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PV+H GF+ K K+L CVC+YCS L V S+P+ T +R + +++
Sbjct: 1 HIELARPVYHPGFIVKVKKVLECVCWYCSMLKVDESNPEFVSAQKATNPNTRLK--LVWE 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNS-LQNKKQ------------GHGGCGRYQPNIRRS 188
LC+ + +CE + D + G DP S L+ +Q GHGGCG QP IR+
Sbjct: 59 LCQPRTVCEASESED--RPGNNDPMSELEKNRQLIDGIVGAKRSKGHGGCGHKQPIIRKE 116
Query: 189 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEW- 244
GL LTA +KH S E+ +P GK L + + GL+ T EW
Sbjct: 117 GLKLTANFKH---SSGEEGVP-EGKQYLSVLQVLQVLKKITDEDASAMGLNFTFARPEWF 172
Query: 245 ----KHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + I + DDLT+KL DIIK N + E GA H+I E
Sbjct: 173 IITVMPVPPLAVRPSIQMDATRQSEDDLTYKLNDIIKANIRVQSCEVEGAPLHIIEEFES 232
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
+LQFHVAT +N++ GLP+A++KSG+P+K+I+ARL+GKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 233 LLQFHVATFMNNEISGLPQALRKSGRPIKSIRARLRGKEGRVRGNLMGKRVDFSARTVIT 292
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPN+ IDQVGVPRSIA+NMT+PE+VTP+N++
Sbjct: 293 GDPNIDIDQVGVPRSIARNMTYPEVVTPYNIE 324
>gi|45935333|gb|AAS79688.1| RNA polymerase II large subunit [Ephedra viridis]
Length = 1013
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 143/324 (44%), Positives = 199/324 (61%), Gaps = 19/324 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP++H+GF+ + ILRCVCF CS++L + + +K K R + + D
Sbjct: 1 HLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHRFKQA-MKVKNPKHRLKR-VLD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEW----K 197
CK K CEGGD I +D A+D + + KK+ HGGCG QP I G+ + AE+ K
Sbjct: 59 CCKNKTKCEGGD--SIEEDQAQDADE-EVKKKPHGGCGSQQPKITIDGMKIIAEYRAPRK 115
Query: 198 HVNEDSQ------EKKIPLTGKGVL-LNKKQGHGGCGR--YQPNIRRSGLDLTAEWKHVN 248
+E Q E+K LT + VL + K+ C + P R + + +
Sbjct: 116 KADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQFARPDW-MILQVLPIP 174
Query: 249 EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVAT 308
+ + DDLTH+LA II+ N L + E +GA H++ E ++LQFHVAT
Sbjct: 175 PPPVRPSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAHIVTEFAQLLQFHVAT 234
Query: 309 LTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDPN+ ID
Sbjct: 235 YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINID 294
Query: 369 QVGVPRSIAQNMTFPEIVTPFNMD 392
Q+GVP SIA N+T+PE+VTP+N++
Sbjct: 295 QLGVPWSIALNLTYPEVVTPYNIE 318
>gi|351518437|gb|AEQ39959.1| RNA polymerase II largest subunit [Lecophagus sp. ATCC 56071]
Length = 1000
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 153/325 (47%), Positives = 199/325 (61%), Gaps = 24/325 (7%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPVFH+GF+TK ++L VC C KLL+ S+ + D ++ + R A ++
Sbjct: 1 HIELAKPVFHIGFMTKIKRVLESVCVNCGKLLLDESNLQFADA-MRIRDPIARFNA-VWR 58
Query: 142 LCKGKNICE----GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK 197
LC+ KNICE D+ D N AE ++KK+ HGGCG QP IR+ GL L WK
Sbjct: 59 LCRAKNICESDAPADDDFDSNAAAAE-----KSKKRSHGGCGNAQPTIRKDGLKLIGMWK 113
Query: 198 HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWK-----HVNE 249
++ +E P K VL + + +I R GL EW V
Sbjct: 114 PSKDEDEEN--PQPTKKVLTPQDVLNIFKHISDEDILRMGLSKDYARPEWMILTCMAVPP 171
Query: 250 DSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHV 306
I + G G + DDLT KL+DIIK N L R E G+ HV+AE +LQFHV
Sbjct: 172 PPVRPSISVEGMGGGMRGEDDLTFKLSDIIKANVNLRRCEQEGSPAHVVAEFESLLQFHV 231
Query: 307 ATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLR 366
AT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL
Sbjct: 232 ATFMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLS 291
Query: 367 IDQVGVPRSIAQNMTFPEIVTPFNM 391
+D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 292 LDEVGVPRSIARTLTYPETVTPYNI 316
>gi|336041421|gb|AEH95288.1| RNA polymerase II largest subunit [Malawimonas californiana]
Length = 1014
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 140/318 (44%), Positives = 191/318 (60%), Gaps = 24/318 (7%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+L+KPVFH+GFV +K++RC+CF+CS+LL V L
Sbjct: 1 HIELSKPVFHMGFVKTIVKVMRCLCFFCSRLLTDTVRLCAASVPLCLAA----------- 49
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSL----QNKKQGHGGCGRYQPNIRRSGLDLTAEWK 197
C+G+++CE GD+M K GAE+ + K HGGCG QP I S + AE+K
Sbjct: 50 -CRGRHVCESGDDM---KPGAENADHTGAGSAKPKVNHGGCGNVQPKIMFSEWKMVAEFK 105
Query: 198 HVNEDSQEKKIPLTGK---GVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEK 254
D +KI LT + +L N + P + R LT V +
Sbjct: 106 ADEADQAARKIVLTPEKVYNILKNVSDEDSKAMGFNPVLARPEWMLTTVLP-VPPPAVRP 164
Query: 255 KIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM 314
I + DDLT+KL+DI+K NN L GAA H+I E ++LQ+H+AT+ DN+M
Sbjct: 165 SIVMDSARAAEDDLTYKLSDIVKANNNLKLQLERGAAPHIIQEFTQLLQYHIATMLDNEM 224
Query: 315 PGLPRAMQK-SGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVP 373
PG+P + Q+ SG+PLK+I+ RL+GK GRIRGNLMGKRVDFSARTVITPDPNL +++VGVP
Sbjct: 225 PGMPVSSQRGSGRPLKSIRQRLRGKHGRIRGNLMGKRVDFSARTVITPDPNLSVNEVGVP 284
Query: 374 RSIAQNMTFPEIVTPFNM 391
R+IA N+T+PE+VTP+N+
Sbjct: 285 RTIALNLTYPEVVTPYNI 302
>gi|120561219|gb|ABM26995.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
Length = 1018
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 152/362 (41%), Positives = 198/362 (54%), Gaps = 94/362 (25%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPV+HVGF+ K KIL CVCF+CSKL ++PK K + R ++D
Sbjct: 1 HIELAKPVYHVGFIIKVKKILECVCFFCSKLKGDETNPKYARA--KQIKDRKARLKAVWD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
+CK K IC+ +E D GA P ++ + G +P
Sbjct: 59 VCKSKMICDSVEETDPATAGAA-PEEMEVDENG-------EP------------------ 92
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKH--------------- 246
+N+++GHGGCG QP IR+ GL L AE+K+
Sbjct: 93 ---------------VNRRKGHGGCGHRQPVIRKDGLKLYAEFKNGSEGAMPEGKQPLTP 137
Query: 247 ----------VNEDSQE--------------------------KKIPLTGKGVLLDDLTH 270
+ED ++ I + G DDLTH
Sbjct: 138 SQVHQILKRITDEDLEDMGLSAEFARPDWMIITVLPVPPPPVRPSIQMDGSSRGEDDLTH 197
Query: 271 KLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKA 330
KLADI+K N + R E+ GA HVI E ++LQFHVAT DND+ G P+A+QKSG+PLK+
Sbjct: 198 KLADILKANVNVKRCETEGAPVHVIDEFEQLLQFHVATYMDNDIAGQPQALQKSGRPLKS 257
Query: 331 IKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN 390
I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL ID+VGVPRSIA+N+TFPE+VTP+N
Sbjct: 258 IRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDEVGVPRSIARNLTFPEMVTPYN 317
Query: 391 MD 392
++
Sbjct: 318 IE 319
>gi|120561225|gb|ABM26998.1| RNA polymerase II largest subunit, partial [Allomyces macrogynus]
Length = 1008
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 152/324 (46%), Positives = 200/324 (61%), Gaps = 27/324 (8%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PV+HV F+ + K+L CVCF+CSKLLV P++P + + K ++RR + ++
Sbjct: 1 HIELARPVYHVSFLPRVKKVLECVCFHCSKLLVDPNNPLFQKA-RRIKDRNRRFKE-VHK 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
LCK + C+ DE K+G EDP+ Q GCG QP IR+ L L ++K N
Sbjct: 59 LCKTRTECKAADE---PKEG-EDPDLPAGYIQA-SGCGEKQPAIRKKNLTLYVQFKQANH 113
Query: 202 D----SQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQE 253
+ QE K L+ VL + KK C GLD EW +
Sbjct: 114 NGEDGKQEGKQELSPSQVLQILKKISDEDC-------EAMGLDPVFARPEWMILTVFPVP 166
Query: 254 K-----KIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVAT 308
I + G DDLT KL DIIK N L + E+ G H I ++ +LQFHVAT
Sbjct: 167 PPPVRPSILVDGTSRGEDDLTFKLCDIIKANAFLQKAEADGVPGHRIKDHEDLLQFHVAT 226
Query: 309 LTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
DN++ G+PRAMQ+SG+P+KAI++RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL ID
Sbjct: 227 FVDNEISGMPRAMQRSGRPIKAIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSID 286
Query: 369 QVGVPRSIAQNMTFPEIVTPFNMD 392
QVGVPRSIA+N+T+PEIVTP+N++
Sbjct: 287 QVGVPRSIARNLTYPEIVTPYNIN 310
>gi|362412139|gb|AEW12837.1| RPB1 [Smittium simulii]
Length = 419
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 150/337 (44%), Positives = 198/337 (58%), Gaps = 39/337 (11%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PV+H GF+ K KIL CVC+YCSKL V S+P+ V + RR I+D
Sbjct: 1 HIELARPVYHPGFIIKVKKILECVCWYCSKLKVDASNPEF--VAAQKVTNPNRRLKLIWD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDP-NSLQNKKQ------------GHGGCGRYQPNIRRS 188
+ + + +CE + D + G DP N ++ +Q GHGGCG QP IR+
Sbjct: 59 IAQPRTVCEASEPED--RPGINDPINDMEKNRQLIDGIVGAKRHKGHGGCGHKQPVIRKE 116
Query: 189 GLDLTAEWKHVNEDSQEKKIP--------LTGKGVLLNKKQGHGGCGRYQPNIRRSGLDL 240
GL LTA +K+ S E+ +P L VL P+ R
Sbjct: 117 GLKLTATFKN---SSGEEGVPEGKQYVSVLQVLQVLKKITDEDAVFMGLSPSFAR----- 168
Query: 241 TAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVI 295
EW V + I + DDLT+KL DI+K N + E GA H+I
Sbjct: 169 -PEWFIVTVMPVPPLAVRPSIQMDATRQSEDDLTYKLNDILKANIRVQSCEIEGAPLHII 227
Query: 296 AENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 355
E +LQFHVAT +N++ GLP+A+QKSG+P+K+I+ARL+GKEGR+RGNLMGKRVDFSA
Sbjct: 228 EEFESLLQFHVATFMNNEISGLPQALQKSGRPIKSIRARLRGKEGRVRGNLMGKRVDFSA 287
Query: 356 RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
RTVIT DPN+ IDQVGVPRSIA+NMTFPE+VTP+N++
Sbjct: 288 RTVITGDPNIDIDQVGVPRSIARNMTFPEVVTPYNIE 324
>gi|362412180|gb|AEW12850.1| RPB1 [Smittium culicis]
Length = 421
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 151/332 (45%), Positives = 202/332 (60%), Gaps = 27/332 (8%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PV+H GF+ + KIL VC+YCSKL S P ++ + LK +R+ + +++
Sbjct: 1 HIELARPVYHPGFIIRVKKILESVCWYCSKLKADESEPAIQ-LALKVTNPNRKLK-LVWE 58
Query: 142 LCKGKNICEGGDEMDINKD------GAEDPNS------LQNKKQ-GHGGCGRYQPNIRRS 188
+CK + +CE E D G E+ N + +K+Q GHGGCG QP IR+
Sbjct: 59 ICKTRTVCEASAEADDRPPQAPGTMGEEERNRQLVDGIVNSKRQKGHGGCGHRQPIIRKE 118
Query: 189 GLDLTAEWKHV--NEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLDLTAEW- 244
GL L+A +K + E E K L+ VL + KK N+ L EW
Sbjct: 119 GLKLSASFKGIPGEEGVTEGKQILSVTQVLQVLKKISDEDASALGLNV----LFARPEWL 174
Query: 245 ----KHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
V + I + DDLT+KL DI+K N + E GA H+I E
Sbjct: 175 IITVMPVPPLAVRPSIQMDATRQSEDDLTYKLNDILKANARVQSCEVEGAPLHIIEEFEA 234
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
+LQFHVAT +N++ GLP+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 235 LLQFHVATFMNNELSGLPQALQKSGRPIKSIRARLKGKEGRVRGNLMGKRVDFSARTVIT 294
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPN+ IDQVGVPRSIA+NMTFPE+VTP+N+D
Sbjct: 295 GDPNIDIDQVGVPRSIARNMTFPEVVTPYNID 326
>gi|299116996|emb|CBN73767.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1904
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 164/419 (39%), Positives = 223/419 (53%), Gaps = 36/419 (8%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVT-----------EGGIKFPETMEGGRPKLGGLMD 54
S A L V+K+QFGILSPDE+R+MSV EG K+ + + G GG D
Sbjct: 8 SSARLCRVQKLQFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKY-DLYKDGSAVYGGAND 66
Query: 55 PRQGVIDRSSRCQTC-------AGN-MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVC 106
PR G +D ++RC+TC GN + +CPGHFGH++LA+PV+H GF+ T+K+LR VC
Sbjct: 67 PRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVC 126
Query: 107 FYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD-------EMDINK 159
F+CS+L S K + +L ++R ++I++ C+ C G
Sbjct: 127 FHCSRLRFDKSDMKYKRALLIKNPKTRL--SYIHEHCRNAKKCVFGTGDLAGGGMDLDGM 184
Query: 160 DGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNED---SQEKKIPLTGKGV- 215
G + GCG P R GL + E+ +D S +++ L+ V
Sbjct: 185 GGENGGEGGGGGGEHASGCGGLLPKFTRQGLQVEVEYPPDMDDVPRSGDRRQYLSASKVH 244
Query: 216 --LLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLA 273
N + P R L V + L DDLTH+L
Sbjct: 245 DIFKNISEEDMVTLGLNPQYSRPDW-LVITVLPVPPPHVRPSVALDAGARSEDDLTHQLV 303
Query: 274 DIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKA 333
+I K N L +G H++ ++LQ+ VA L DN+ G P+ Q+SGKPLK ++A
Sbjct: 304 NICKANMRLEACVRTGEPAHIVESFEQLLQYKVAALFDNERAGQPQETQRSGKPLKTLRA 363
Query: 334 RLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
RLKGKEGRIRGNLMGKRVDFSARTVIT DPNL IDQVGVP+SIA N+T PE+VT FN++
Sbjct: 364 RLKGKEGRIRGNLMGKRVDFSARTVITADPNLGIDQVGVPKSIALNLTVPELVTAFNVE 422
>gi|83320448|gb|ABC02851.1| RNA polymerase II largest subunit, partial [Rhopalomyces elegans]
Length = 792
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 153/324 (47%), Positives = 200/324 (61%), Gaps = 22/324 (6%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKPV+HVGF+TK KIL CVCFYCSKL V S+P+ + ++ R +A +++
Sbjct: 1 HVELAKPVYHVGFLTKVKKILECVCFYCSKLKVDESNPRF-GLAMRIHDPKARLKA-VWE 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSL----QNKKQGHGGCGRYQPNIRRSGLDLTAEWK 197
LCK K +C+ DE +D + + + KK HGGCGR QP +R+ GL L A
Sbjct: 59 LCKVKTMCDQDDEDADKRDDEDGEDEDTLLGKPKKHRHGGCGRRQPTLRKEGLKLYA--- 115
Query: 198 HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKH----------V 247
S +++ PL GK L+ Q R + S + L+ E+ V
Sbjct: 116 -TQRSSSKEQNPLEGKQ-LVKPDQALQILKRISDDDLES-MGLSVEFARPENLIIMVLPV 172
Query: 248 NEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVA 307
I + G DDLTHKL+D++K N + R E GA HV E +LQFHVA
Sbjct: 173 PPPQVRPSIQMDGTSKGEDDLTHKLSDVLKANAXVARRERDGAPHHVTEEFETLLQFHVA 232
Query: 308 TLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRI 367
T DND+ G P+A+QKSG+PLK+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL I
Sbjct: 233 TYMDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSI 292
Query: 368 DQVGVPRSIAQNMTFPEIVTPFNM 391
D+VGVP IA+N+TFPEIVTP+N+
Sbjct: 293 DEVGVPLLIAKNLTFPEIVTPYNV 316
>gi|362412160|gb|AEW12844.1| RPB1 [Smittium mucronatum]
Length = 421
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 147/334 (44%), Positives = 202/334 (60%), Gaps = 31/334 (9%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PV+H GF+ + KIL CVC+YCSKL S P + + LK +RR + +++
Sbjct: 1 HIELARPVYHPGFIIRVKKILECVCWYCSKLKTDESEPAFQ-LALKASNPNRRMK-LVWE 58
Query: 142 LCKGKNICEGGDEMDINKDGA-----EDPNSLQ--------NKKQGHGGCGRYQPNIRRS 188
+CK + +CE E + A E+ + Q + +GHGGCG QP R+
Sbjct: 59 ICKTRTVCEASPESEDRPAAAPGMMGEEERNRQLVDGIVSSKRSKGHGGCGHRQPIFRKE 118
Query: 189 GLDLTAEWKHV--NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKH 246
GL L+A +K + E E K L+ VL K+ + + + L EW
Sbjct: 119 GLKLSASFKGIPGEEGVTEGKQILSVTQVLQVLKKVTDEDASF---LGLNPLFARPEWLV 175
Query: 247 VNEDSQEKKIPLTGKGVLL--------DDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
+ + PL + ++ DDLT+KL DI+K N + E GA H+I E
Sbjct: 176 I---TVMPVPPLAVRPSIMMDATRQSEDDLTYKLNDILKANARVQSCEVEGAPLHIIEEF 232
Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
+LQFHVAT +N++ GLP+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTV
Sbjct: 233 EALLQFHVATFMNNELSGLPQALQKSGRPIKSIRARLKGKEGRVRGNLMGKRVDFSARTV 292
Query: 359 ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
IT DPN+ IDQVGVPRSIA+NMTFPE+VTP+N+D
Sbjct: 293 ITGDPNIDIDQVGVPRSIARNMTFPEVVTPYNID 326
>gi|33326217|gb|AAQ08518.1| RNA polymerase II largest subunit [Amborella trichopoda]
Length = 1013
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 139/323 (43%), Positives = 199/323 (61%), Gaps = 17/323 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP+FH+GF+ + ++RCVCF CS++L + + + ++R ++ + D
Sbjct: 1 HLELAKPMFHIGFLKTVLSVMRCVCFNCSRILADEEDHRFKQALKIRNPKTRLKK--VLD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK--HV 199
CK K CEGGD DI++D A+D + KK+ HGGCG QP I G + AE+K
Sbjct: 59 CCKNKTKCEGGD--DIDEDQAQDSEEVVKKKR-HGGCGAQQPKITIEGTKMVAEYKAPRK 115
Query: 200 NEDSQEKKIP--------LTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNE 249
D QE+ +P L + VL + K+ C N + + D + + +
Sbjct: 116 KNDEQEQMLPEPVERKQQLAAEKVLNVLKRITDEDCQLLGLNPKYARPDWMILQVMPIPP 175
Query: 250 DSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
+ + DDLTH+LA +I+ N L R E +GA H+I+E ++LQFHVAT
Sbjct: 176 PPVRPSVMMDTSSRSEDDLTHQLAMVIRHNENLKRQEKNGAPAHIISEFAQLLQFHVATY 235
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + ID+
Sbjct: 236 FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDE 295
Query: 370 VGVPRSIAQNMTFPEIVTPFNMD 392
+GVP SIA N+T+PE VTP+N++
Sbjct: 296 LGVPWSIALNLTYPETVTPYNIE 318
>gi|189030951|gb|ABD97888.2| RNA polymerase II largest subunit [Clavaria inaequalis]
Length = 413
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 148/326 (45%), Positives = 194/326 (59%), Gaps = 24/326 (7%)
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIY 140
GHI+LA+PVFH GF+ K KIL C+C C KL S P D V + ++R ++
Sbjct: 1 GHIELARPVFHPGFLVKVKKILECICXNCGKLKADKSDPAFNDRVRHAR-DPKKRTVVVW 59
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
+ CK K ICE D D ++G + + K+GHGGCG QP IR+ L L ++K
Sbjct: 60 NYCKTKMICEADDPKDEMENGEGENEA--KSKKGHGGCGHIQPLIRKEALKLYVQYKRPK 117
Query: 201 EDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA--------EWKHVN---- 248
+D +E K L K + I + LDL EW +
Sbjct: 118 DDDEEVKSALADKRLFTP-----ADIYVLFKKITDTDLDLLGLSGEYARPEWXILTILPV 172
Query: 249 -EDSQEKKIPLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFH 305
I + G GV+ DDLT+KL DIIK + + R E GA HVI E ++LQFH
Sbjct: 173 PPPPVRPSIAVDG-GVMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVIMEFEQLLQFH 231
Query: 306 VATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNL 365
VAT DN++ G+P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL
Sbjct: 232 VATYMDNNIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNL 291
Query: 366 RIDQVGVPRSIAQNMTFPEIVTPFNM 391
+D+VGVP+SIA N+T+PE VTP+N+
Sbjct: 292 ELDEVGVPKSIAMNLTYPERVTPYNI 317
>gi|188532157|gb|ACD63090.1| RNA polymerase II largest subunit [Pisum sativum]
Length = 1010
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 139/322 (43%), Positives = 197/322 (61%), Gaps = 18/322 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
+++LAKP+FH+GF+ + I+RCVCF CSK+L K + + ++R R+ I D
Sbjct: 1 YLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEQDHKFKQALRIKNPKNRLRK--ILD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
CK K CEGGD++D+ E+P K+ GGCG QP I G+ + AE+K +
Sbjct: 59 ACKNKTKCEGGDDLDLPGQDTEEP-----VKKSRGGCGAQQPKITIEGMKINAEYKAQRK 113
Query: 202 DSQ---------EKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNED 250
S E+K L+ + VL + K+ C N + + D L + +
Sbjct: 114 KSDDQDQLPEPVERKQTLSAERVLSVLKRISDEDCQLLGLNPKYARPDWLILQVLPIPPP 173
Query: 251 SQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
+ + DDLTH+LA II+ N L R E +G+ H+I+E ++LQFH+AT
Sbjct: 174 PVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIISEFAQLLQFHIATYF 233
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DN++PGLPRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + IDQ+
Sbjct: 234 DNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 293
Query: 371 GVPRSIAQNMTFPEIVTPFNMD 392
GVP +IA N+T+PE VTP+N++
Sbjct: 294 GVPWTIALNLTYPETVTPYNIE 315
>gi|120561223|gb|ABM26997.1| RNA polymerase II largest subunit, partial [Gigaspora gigantea]
Length = 1039
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 152/364 (41%), Positives = 197/364 (54%), Gaps = 87/364 (23%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPVFHVGF+ K KIL C+C CSKL S+ K + + +RR ++D
Sbjct: 1 HIELAKPVFHVGFLPKVKKILECICINCSKLKTDDSNAKF--IQARKIRDPKRRLKAVWD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
+CK K CE G+E D + G++ + + +K+Q + +E
Sbjct: 59 ICKSKTTCERGEEADQDDKGSDYEDYVPSKQQQQ---------------------QTTDE 97
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKH---VNEDSQEKKIPL 258
D L+ KK+ HGGCG QP IR+ GL L +K +E SQ+ + PL
Sbjct: 98 DLG-----------LVRKKKPHGGCGHKQPTIRKEGLKLYVNYKSNKDSDEQSQDTRKPL 146
Query: 259 TGKGVLL--------------------------------------------------DDL 268
T V DDL
Sbjct: 147 TPADVYQILKKISPPDLKDMGLNGEFARPDWMIITILPVPPPPVRPSIQMDGTSRGEDDL 206
Query: 269 THKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPL 328
THKLADI+K N + R E+ G HV+ E +LQFH AT DN+M G P+A+QKSG+PL
Sbjct: 207 THKLADILKANQNVKRYEAEGHPAHVVNEFEALLQFHCATYMDNEMAGQPQALQKSGRPL 266
Query: 329 KAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTP 388
K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPN+ +DQVGVP+SIAQN+TFPE+VTP
Sbjct: 267 KSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNISVDQVGVPKSIAQNLTFPELVTP 326
Query: 389 FNMD 392
FN+D
Sbjct: 327 FNID 330
>gi|362412157|gb|AEW12843.1| RPB1 [Smittium mucronatum]
Length = 421
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 147/334 (44%), Positives = 202/334 (60%), Gaps = 31/334 (9%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PV+H GF+ + KIL CVC+YCSKL S P + + LK +RR + +++
Sbjct: 1 HIELARPVYHPGFIIRVKKILECVCWYCSKLKTDESEPAFQ-LALKASNPNRRIK-LVWE 58
Query: 142 LCKGKNICEGGDEMDINKDGA-----EDPNSLQ--------NKKQGHGGCGRYQPNIRRS 188
+CK + +CE E + A E+ + Q + +GHGGCG QP R+
Sbjct: 59 ICKTRTVCEASPESEDRPAAAPGMMGEEERNRQLVDGIVSSKRSKGHGGCGHRQPIFRKE 118
Query: 189 GLDLTAEWKHV--NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKH 246
GL L+A +K + E E K L+ VL K+ + + + L EW
Sbjct: 119 GLKLSASFKGIPGEEGVTEGKQILSVTQVLQVLKKVTDEDASF---LGLNPLFARPEWLV 175
Query: 247 VNEDSQEKKIPLTGKGVLL--------DDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
+ + PL + ++ DDLT+KL DI+K N + E GA H+I E
Sbjct: 176 I---TVMPVPPLAVRPSIMMDATRQSEDDLTYKLNDILKANARVQSCEVEGAPLHIIEEF 232
Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
+LQFHVAT +N++ GLP+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTV
Sbjct: 233 EALLQFHVATFMNNELSGLPQALQKSGRPIKSIRARLKGKEGRVRGNLMGKRVDFSARTV 292
Query: 359 ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
IT DPN+ IDQVGVPRSIA+NMTFPE+VTP+N+D
Sbjct: 293 ITGDPNIDIDQVGVPRSIARNMTFPEVVTPYNID 326
>gi|120561231|gb|ABM27001.1| RNA polymerase II largest subunit, partial [Coelomomyces
stegomyiae]
Length = 1014
Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 155/319 (48%), Positives = 195/319 (61%), Gaps = 13/319 (4%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKP++ V F+ + KIL CVCF+CS+LLV P +P + LK RR I+
Sbjct: 1 HIELAKPLYQVSFLPRVKKILECVCFHCSRLLVDPENPFFQK--LKLIRDRNRRFKEIHK 58
Query: 142 LCKGKNICEGGDEMDINKDGAE--DPNSLQNKKQG-HGGCGRYQPNIRRSGLDLTAEWKH 198
LCK K C+ D K+ E D S+ N+K GCG+ P IRR+GL L A+WK
Sbjct: 59 LCKAKTECKNDYLEDETKNLNEINDVTSMLNEKTFLQSGCGQKLPAIRRTGLTLFAQWKQ 118
Query: 199 -VNEDS-QEKKIPLTGKGVLLNKKQ----GHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQ 252
EDS QE K L+ VL K+ G R + LT
Sbjct: 119 GTGEDSNQEGKQQLSPAQVLQILKKISDADADALGMVPEFSRPEWMILTVLPVPPPPVRP 178
Query: 253 EKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDN 312
+ T +G DDLT+KL D+IK N L R E+ GA H I ++ LQFHVAT DN
Sbjct: 179 TILVDGTSRGE--DDLTYKLCDVIKANACLQRAEAEGAPGHRIKDHEDFLQFHVATFVDN 236
Query: 313 DMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGV 372
++ GLPRAMQ+SG+P+KAI++RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL ID+VGV
Sbjct: 237 EISGLPRAMQRSGRPIKAIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDEVGV 296
Query: 373 PRSIAQNMTFPEIVTPFNM 391
PRSIA+N+T PEIVT +N+
Sbjct: 297 PRSIARNLTLPEIVTRYNI 315
>gi|83317456|ref|XP_731168.1| RNA polymerase A/beta'/A'' subunit [Plasmodium yoelii yoelii 17XNL]
gi|23491122|gb|EAA22733.1| RNA polymerase A/beta'/A'' subunit, putative [Plasmodium yoelii
yoelii]
Length = 2312
Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 160/427 (37%), Positives = 226/427 (52%), Gaps = 54/427 (12%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S L+ VK+++ G+L P+ I+++ V E I + + G P+ GGL D R G ID +
Sbjct: 10 SACELKRVKRLELGVLDPEIIKKIGVCE--IVNVDIYKDGFPRDGGLNDIRMGTIDYKAL 67
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
C TC N+ CPGHFG+I+LAKP++H GF+ + +LRCVC++C +LL + KV+ +
Sbjct: 68 CGTCNMNVKNCPGHFGYIELAKPMYHYGFMNVVLNVLRCVCYHCGRLLCDMNSSKVK-YI 126
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGG----DEMDINKDGAED------------PNSLQ 169
K K S R + + +LC+G +C D + IN ++ L
Sbjct: 127 EKIKVNSLRLKK-LSELCQGIKVCNHSSVQDDNIYINDTSIDNFYNNDLSNLNVNQQMLL 185
Query: 170 NKKQGHGG-----------CGRYQPNIRRSGLDLTAEWKHVNE----DSQEKKIPLTGKG 214
N + CG QP R G ++ ++ H N D ++++
Sbjct: 186 NSSNNYSNLFEMISKEDVDCGCVQPKYTREGPNMYIQFLHNNNEDDIDGSKRRLSAEEAL 245
Query: 215 VLLNK--KQGHGGCGRYQPNIRRSGLDLTA-------EWKHVNEDSQEKKIPLTGKGVLL 265
+L K K+ G L LT +V +Q +
Sbjct: 246 DILKKIRKEEMSILGFNSDRCIPPSLILTCMPIPPPCARPYVQYGNQRSE---------- 295
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
DDLT KL DI+K N +L R GA +HV+ + +LQFH+ TL DND+PG+P A +S
Sbjct: 296 DDLTLKLLDIVKTNIQLKRQTDRGAKSHVLQDLCSLLQFHITTLFDNDIPGMPIATTRSK 355
Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
KP+KAI+ RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL ID +GVP+S+A +TF E
Sbjct: 356 KPIKAIRTRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNIDYIGVPKSVAMTLTFCET 415
Query: 386 VTPFNMD 392
VTP N D
Sbjct: 416 VTPLNYD 422
>gi|412992604|emb|CCO18584.1| RNA polymerase II largest subunit [Bathycoccus prasinos]
Length = 1667
Score = 254 bits (648), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 150/377 (39%), Positives = 207/377 (54%), Gaps = 49/377 (12%)
Query: 29 MSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHFGHIDLAKP 88
MSV E I+ ET E G+PK GGL DPR G +DR + C+T + PG+FGH++LAKP
Sbjct: 1 MSVCE--IETSETYEKGKPKRGGLSDPRMGTMDRGTVCETDGADSVHNPGYFGHLELAKP 58
Query: 89 VFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNI 148
V+H GF+ +K+LRCV + S++L+ P + +++ + R + D CK +
Sbjct: 59 VYHHGFLNVVLKVLRCVGYSSSRILLDPETDARFNQIMRIQNPKHRLKKLT-DACKTRTE 117
Query: 149 CEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE----DSQ 204
C H G QP+ R G+ +TA ++ +E D
Sbjct: 118 CP------------------------HTGTA--QPSYRCEGMKITANFEKCDEELLPDGG 151
Query: 205 EKKIPLTG-KGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEW-----KHVNEDSQEKK 255
E+K+ +T K + + K C R GLD +W +
Sbjct: 152 ERKVVITAEKALQILKNISDEDC-------RLLGLDPEHARPDWFILQVMPIPPPPVRPS 204
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+ DDLT KL +I++ N L R E +GA HV+ E ++LQ+H+ T DN +
Sbjct: 205 VSFDASTRSEDDLTVKLMEIVRTNKNLQRQEQNGAPAHVVDEFAELLQYHIMTFMDNTVA 264
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G PRAM +SG+P+K+I RLKGK GRIRGNLMGKRVDFSARTVITPDPNL +DQ+GVP S
Sbjct: 265 GQPRAMTRSGRPIKSISERLKGKAGRIRGNLMGKRVDFSARTVITPDPNLMLDQLGVPWS 324
Query: 376 IAQNMTFPEIVTPFNMD 392
IA NMT+PE VTP+N+D
Sbjct: 325 IALNMTYPETVTPYNID 341
>gi|33326209|gb|AAQ08514.1| RNA polymerase II largest subunit [Welwitschia mirabilis]
Length = 1013
Score = 254 bits (648), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 144/324 (44%), Positives = 197/324 (60%), Gaps = 19/324 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP+FH+GF+ + ILRCVCF CS++L + + LK K R + I D
Sbjct: 1 HLELAKPMFHIGFMKTVLSILRCVCFNCSRILADEEDHRFKQA-LKIKNPKHRLEK-ILD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK--HV 199
CK K CEGGD I D +D + + KK+ HGGCG QP I G+ + AE+K
Sbjct: 59 CCKNKTKCEGGDV--IEDDQGQDVDE-EVKKKPHGGCGSQQPKITIDGMKIIAEYKAPRK 115
Query: 200 NEDSQEKKIP--------LTGKGVL-LNKKQGHGGCGR--YQPNIRRSGLDLTAEWKHVN 248
D QE+ +P L+ + VL + K+ C + P R + + +
Sbjct: 116 KADEQEQLMPEPVERKQQLSAERVLNILKRISDEECQMLGFNPKYARPDW-MILQVLPIP 174
Query: 249 EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVAT 308
+ + DDLTH+LA II+ N L + E +GA H++ E ++LQFHVAT
Sbjct: 175 PPPVRPSVMMNSTTRSEDDLTHQLAMIIRHNENLKKQEKNGAPAHIVTEFAQLLQFHVAT 234
Query: 309 LTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDPN+ ID
Sbjct: 235 YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINID 294
Query: 369 QVGVPRSIAQNMTFPEIVTPFNMD 392
++GVP SIA N+T+PEIVTP+N++
Sbjct: 295 ELGVPWSIALNLTYPEIVTPYNIE 318
>gi|33326219|gb|AAQ08519.1| RNA polymerase II largest subunit [Psilotum nudum]
Length = 1013
Score = 254 bits (648), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 144/323 (44%), Positives = 198/323 (61%), Gaps = 17/323 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP+FH+G + + ILRCVC+ CS++L + + + R R+ + D
Sbjct: 1 HLELAKPMFHIGVLKTVLTILRCVCYNCSRILADEEDHRFKQARKIRNPKHRLRR--MLD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
CK K+ CEGGD DI++D D N KK+ HGGCG QP I G+ + AE+K +
Sbjct: 59 CCKTKSKCEGGD--DIDEDQGHD-NEEAEKKKKHGGCGAQQPKITIDGMKIIAEFKASKK 115
Query: 202 DSQE----------KKIPLTGKGVLLNKKQ-GHGGCGRYQPNIRRSGLD-LTAEWKHVNE 249
++E +K L+ + VL KQ C N + + D + + +
Sbjct: 116 KNEEQDQYMPEPVERKQQLSAEKVLSILKQISDEDCVTLGLNPKYARPDWMILQVLPIPP 175
Query: 250 DSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
S + + DDLTH+LA II+ NN L R E +GA TH+I E ++LQFH+AT
Sbjct: 176 PSVRPSVMMDTSARSEDDLTHQLAMIIRHNNNLKRQEQNGAPTHIINEFAQLLQFHIATY 235
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND+PG PRA Q+SG+P+K+I RLK KEGRIRGNLMGKRVDFSARTVITPDPN+ ID+
Sbjct: 236 FDNDLPGQPRATQRSGRPIKSICQRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDE 295
Query: 370 VGVPRSIAQNMTFPEIVTPFNMD 392
+GVP SIA N+T+PE VTP+N++
Sbjct: 296 LGVPWSIALNLTYPETVTPYNIE 318
>gi|33326205|gb|AAQ08512.1| RNA polymerase II largest subunit [Cycas revoluta]
Length = 1013
Score = 254 bits (648), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 143/323 (44%), Positives = 197/323 (60%), Gaps = 17/323 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++L KP++H+GF+ + ILR VCF CS++L + + LK K R + + D
Sbjct: 1 HLELVKPMYHIGFLKTVLSILRSVCFNCSRILADEEDHRFKQA-LKIKNPKHRLRK-VLD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
CK K CEGGDE+D D A+D + KK+ HGGCG QP I G+ + AE+K +
Sbjct: 59 CCKNKTKCEGGDEID--DDQAQDGEEMTKKKR-HGGCGAQQPKISIDGMKIIAEYKATRK 115
Query: 202 --DSQEKKIP--------LTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNE 249
D QE+ +P L+ + VL + K+ C N + + D + + +
Sbjct: 116 KADEQEQLMPEPVERKQQLSAEKVLDILKRISDEDCQMLGLNPKYARPDWMILQVLPIPP 175
Query: 250 DSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
+ + DDLTH+LA II+ N L R E +GA H+I E ++LQFH+AT
Sbjct: 176 PPVRPSVMMDTTSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATY 235
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND+PG PRA Q+SG+P+K+I RLK KEGRIRGNLMGKRVDFSARTVITPDPN+ ID+
Sbjct: 236 FDNDLPGQPRATQRSGRPIKSICNRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDE 295
Query: 370 VGVPRSIAQNMTFPEIVTPFNMD 392
+GVP SIA N+T+PE VTP+N++
Sbjct: 296 LGVPWSIALNLTYPETVTPYNIE 318
>gi|188532159|gb|ACD63091.1| RNA polymerase II largest subunit [Saruma henryi]
Length = 1009
Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 136/322 (42%), Positives = 196/322 (60%), Gaps = 19/322 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP+FH+GF+ + I+RCVCF CSK+L + + + + R R+ + D
Sbjct: 1 HLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHRFKQSLKVRNPKHRLRK--VLD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
CK K CEGGDE+D+ +++P K+ GGCG QP + G+ + AE+K +
Sbjct: 59 ACKNKQKCEGGDEIDVQGQESDEP-----VKKKRGGCGAQQPKLTVEGMKMIAEYKAKKK 113
Query: 202 DSQEKKIP--------LTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLDLTAEWKHVNED 250
+ ++++P LT + VL + K+ C P R + + +
Sbjct: 114 NDDQEQLPEPVERKQQLTAEKVLSVLKRISDEDCILLGLSPKYARPDW-MILQVLPIPPP 172
Query: 251 SQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
+ + DDLTH+LA II+ N L R E +GA H+I+E ++LQFH+AT
Sbjct: 173 PVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQEKNGAPAHIISEFAQLLQFHIATYF 232
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + ID++
Sbjct: 233 DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDEL 292
Query: 371 GVPRSIAQNMTFPEIVTPFNMD 392
GVP SIA N+T+PE VTP+N+D
Sbjct: 293 GVPWSIALNLTYPETVTPYNID 314
>gi|158427122|gb|ABW38176.1| RNA polymerase II largest subunit, partial [Botryosphaeria
dothidea]
Length = 372
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 150/329 (45%), Positives = 198/329 (60%), Gaps = 19/329 (5%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+L PVFH GF+ K K+L CVC C K+L S + +D L+ + +R
Sbjct: 1 ECPGHFGHIELHTPVFHAGFINKIKKLLECVCHNCGKILADESEQQFKDA-LRLRDPKKR 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQG--HGGCGRYQPNIRRSGLDL 192
+A I+ +CK K +C+ MD D D + +NKK HGGCG QP +R+ GL L
Sbjct: 60 FEA-IWKVCKPKAVCQ----MDQPSDDY-DAGAQKNKKPQIQHGGCGNRQPELRKDGLKL 113
Query: 193 TAEWK-HVNEDSQEKKIP----LTGKGVL----LNKKQGHGGCGRYQPNIRRSGLDLTAE 243
WK ED +E + P + + VL L + G R + +T
Sbjct: 114 VGTWKPQKGEDEEEARQPEKRVIKPQDVLNIFKLITDESLVTLGLNVNFARPEWMVITML 173
Query: 244 WKHVNEDSQEKKIPLTGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKML 302
+ TG+G+ DDLT+KLADII+ N + R + GAA HVI + +L
Sbjct: 174 PVPPPPVRPSISVDGTGQGMRGEDDLTYKLADIIRANASIKRCHTEGAAQHVIDDFEVLL 233
Query: 303 QFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD 362
Q+HVAT DND+ G P+A QKSG+ LK I+ RLKGK+GR+RGNLMGKRVDFSARTVIT D
Sbjct: 234 QWHVATYMDNDLAGQPQAQQKSGRALKTIRGRLKGKDGRLRGNLMGKRVDFSARTVITGD 293
Query: 363 PNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
PNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 294 PNLDLDEVGVPRSIARTLTYPETVTPYNI 322
>gi|188532145|gb|ACD63084.1| RNA polymerase II largest subunit [Drimys winteri]
Length = 1010
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 141/329 (42%), Positives = 198/329 (60%), Gaps = 32/329 (9%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP+FH+GF+ + I+RCVCF CSK+L K + + + R R+ + D
Sbjct: 1 HLELAKPMFHIGFLKTVLSIMRCVCFNCSKVLADEEDHKFKQAMKVKNPKHRLRK--VLD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHV-- 199
CK K C+GGDE+D+ +E+P K+ GGCG QP + G+ + AE+K
Sbjct: 59 ACKNKTKCDGGDEIDVQGQDSEEP-----VKKPRGGCGAQQPKLTVEGMKMIAEYKATKK 113
Query: 200 -NEDSQ------EKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVN 248
N+D + E+K L+ + VL + K+ C R GLD +W +
Sbjct: 114 KNDDQEQLPEPVERKQQLSAERVLSILKRISDEDC-------RLLGLDPKYARPDWMILQ 166
Query: 249 -----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
+ + DDLTH+LA II+ N L R E +GA H+I+E ++LQ
Sbjct: 167 VLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQ 226
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
FH+AT DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP
Sbjct: 227 FHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 286
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+ ID++GVP SIA N+T+PE VTP+N++
Sbjct: 287 TINIDELGVPWSIALNLTYPETVTPYNIE 315
>gi|403365508|gb|EJY82539.1| hypothetical protein OXYTRI_19848 [Oxytricha trifallax]
Length = 1782
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 156/396 (39%), Positives = 206/396 (52%), Gaps = 38/396 (9%)
Query: 2 AMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVI 60
A A S L V+ VQFG+L+PDE+R+MSV I T + G P G+ DPR G +
Sbjct: 8 AFAQSYVELHKVRAVQFGLLNPDEVRKMSVV--NINNERTYDDRGIPNFSGINDPRMGTM 65
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
D+ RC TC G+ +CPGHFGHI+LAKPV+H G + K+LRCVCFYCSKLL K
Sbjct: 66 DKELRCFTCKGSQADCPGHFGHIELAKPVYHAGLLEFIRKVLRCVCFYCSKLLAE----K 121
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR 180
+ L+ S R A LC G +C+ CG
Sbjct: 122 EKLEELRRIKTSSARLARALKLCDGIRLCKE--------------------------CGH 155
Query: 181 YQPNIRRSGLDLTAEWKH----VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRS 236
QP ++GL + ++ D ++ P V + +QP I R
Sbjct: 156 KQPKFSKTGLKIQVDYMDDQIDAGRDRKQFLQPDEAHKVFERIDEESCTLMGFQPKISRP 215
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
++ + V + + DDLT+ I++ N L GA I
Sbjct: 216 E-NMIIKNLAVAPPPVRPSVSMGNTMRSEDDLTYCYIKILQTNIALQTQIQKGANLTTIN 274
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
LQ++VAT+ DN++ G P KSGKPLKAI++RL+GKEGR+RGNLMGKRVDFSAR
Sbjct: 275 VLRDSLQYYVATVMDNEIQGQPTQKHKSGKPLKAIRSRLRGKEGRLRGNLMGKRVDFSAR 334
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVITPDP LR+DQ+GVP+ IA N+T PE VT N+D
Sbjct: 335 TVITPDPILRLDQLGVPQQIALNLTVPETVTAENID 370
>gi|188532139|gb|ACD63081.1| RNA polymerase II largest subunit [Asparagus officinalis]
Length = 1009
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 138/322 (42%), Positives = 198/322 (61%), Gaps = 17/322 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP+FH+GF+ + I+RCVCF CSK+L + + + ++R ++ IYD
Sbjct: 1 HLELAKPMFHIGFMKTVLAIMRCVCFNCSKILADEDDVRFKQALKIRNPKNRLKR--IYD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
CK K C GGD++D+ G +D + + K+ GGCG QPNI G+ + AE+K +
Sbjct: 59 ACKSKKKCAGGDDIDVQ--GQQDSD--EPVKKSRGGCGAQQPNITIDGMKMVAEYKATKK 114
Query: 202 DSQ---------EKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNED 250
S E+K L+ + VL + K+ C N + + D + + +
Sbjct: 115 KSDDPEQLPEPVERKQQLSAERVLSVLKRISDEDCLLLGLNPKYARPDWMILQVLPIPPP 174
Query: 251 SQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
+ + DDLTH+LA II+ N L R E +GA H+I E ++LQFH+AT
Sbjct: 175 PVRPSVMMDTSARSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYF 234
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + ID++
Sbjct: 235 DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDEL 294
Query: 371 GVPRSIAQNMTFPEIVTPFNMD 392
GVP SIA N+T+PE VTP+N++
Sbjct: 295 GVPWSIALNLTYPETVTPYNIE 316
>gi|33326203|gb|AAQ08511.1| RNA polymerase II largest subunit [Zamia muricata]
Length = 1013
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 145/323 (44%), Positives = 196/323 (60%), Gaps = 17/323 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP++H+GF+ + ILR VCF CS++L + + LK K R + + D
Sbjct: 1 HLELAKPMYHIGFMKTVLSILRSVCFDCSRILADEEDHRFKQA-LKIKNPKHRLRK-VLD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
CK K CEGGDE I D A+D KK+ HGGCG QP I G+ + AE+K +
Sbjct: 59 CCKNKVKCEGGDE--IEDDQAQDGEETAKKKR-HGGCGAQQPKISIDGMKIIAEYKATRK 115
Query: 202 --DSQEKKIP--------LTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNE 249
D QE+ +P L+ + VL + K+ C N + + D + + +
Sbjct: 116 KADEQEQLMPEPVERKQQLSAEKVLDILKRISDEDCQLLGLNPKYARPDWMILQVLPIPS 175
Query: 250 DSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
+ + DDLTH+LA II+ N L R E +GA H+I E ++LQFH+AT
Sbjct: 176 PPVRPSVMMNTTARSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATY 235
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND+PG PRA Q+SG+P+K+I RLK KEGRIRGNLMGKRVDFSARTVITPDPN+ IDQ
Sbjct: 236 FDNDLPGQPRATQRSGRPIKSICNRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQ 295
Query: 370 VGVPRSIAQNMTFPEIVTPFNMD 392
+GVP SIA N+T+PE VTP+N++
Sbjct: 296 LGVPWSIALNLTYPETVTPYNIE 318
>gi|403223272|dbj|BAM41403.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 1645
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 161/407 (39%), Positives = 214/407 (52%), Gaps = 59/407 (14%)
Query: 10 LRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTC 69
L+ ++ ++FGIL P+ I+RMSV E I E G P+ GGL D R G D C TC
Sbjct: 16 LKKIRSIEFGILDPEIIKRMSVCE--ITLTELYREGVPQTGGLNDLRMGTTDPRHVCTTC 73
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTK 129
++ CPGHFGHI LAKP++H GF+ IKIL VCF CSKL + PK+R+++
Sbjct: 74 RMDLKYCPGHFGHIVLAKPMYHYGFMPTIIKILSSVCFNCSKLRLDKEDPKMRNILKIPP 133
Query: 130 GQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHG---GCGRYQPNIR 186
G R +I + K C Q K Q GCG QP
Sbjct: 134 GAMRLN--YIATMSKPITNC-------------------QFKSQSVSKVQGCGYPQPIFT 172
Query: 187 RSGLDL----TAEWKHVNEDSQEK----KIPLTG-------KGVLLNKKQGHGGCG-RYQ 230
+ G +L T + + V E+++E + PL KG+ + G R Q
Sbjct: 173 KEGPNLMIKFTQKQREVLEEAEEPCDDIQRPLAPEEAFKVLKGITTEDMKYLGFVPERSQ 232
Query: 231 P-----NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRN 285
P N+ + D E DDLT KL D++K NN + R+
Sbjct: 233 PSWLILNVLPVPPPAVRPYVQYGSDRSE------------DDLTLKLLDVLKTNNLIKRH 280
Query: 286 ESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGN 345
+ A H+I E ++LQFH+ TL DND+PG+P A +S KP+K+I+ARLKGKEGR+RGN
Sbjct: 281 DKRATAPHIIQEMCQLLQFHITTLFDNDIPGMPVASTRSKKPIKSIRARLKGKEGRLRGN 340
Query: 346 LMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
LMGKRVDFSARTVIT DPN+ ID +GVP+SIA +TF E V N +
Sbjct: 341 LMGKRVDFSARTVITGDPNIPIDTIGVPKSIAMTLTFCETVNSLNYE 387
>gi|188532147|gb|ACD63085.1| RNA polymerase II largest subunit [Illicium parviflorum]
Length = 1013
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 140/323 (43%), Positives = 197/323 (60%), Gaps = 17/323 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP+FH+GF+ + I+R VCF CS +L + + + + R R+ + D
Sbjct: 1 HLELAKPMFHIGFLKTVLSIMRSVCFNCSHILADQEDHRFKQALKIRNPKHRLRK--VLD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
CK K CEGGD DI++D A+D KK+GHGGCG QP I G+ + AE+K +
Sbjct: 59 CCKSKQKCEGGD--DIDEDQAQDSED-GVKKKGHGGCGAQQPKITVEGMKMIAEFKQTRK 115
Query: 202 DSQ----------EKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNE 249
S E+K L+ + VL + K+ C N + + D + + +
Sbjct: 116 KSDEQEQMLPEPAERKQQLSAERVLSILKRISDEDCLLLGLNPKYARPDWMILQVLPIPP 175
Query: 250 DSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
+ + DDLTH+LA II+ N L R E +GA H+I+E ++LQFH+AT
Sbjct: 176 PPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 235
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + ID+
Sbjct: 236 FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDE 295
Query: 370 VGVPRSIAQNMTFPEIVTPFNMD 392
+GVP SIA N+T+PE VTP+N++
Sbjct: 296 LGVPWSIALNLTYPETVTPYNIE 318
>gi|12642616|gb|AAK00312.1|AF315822_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monoblepharis
macrandra]
Length = 1603
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 152/370 (41%), Positives = 191/370 (51%), Gaps = 100/370 (27%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LAKPVFH GFVT K+L VC +C KL S P D K++ + RR
Sbjct: 1 ECPGHFGHIELAKPVFHEGFVTTIKKLLESVCLFCGKLKSDDSDP---DFFRKSRLRDRR 57
Query: 135 -RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLT 193
R ++ LCK K +C+G +E
Sbjct: 58 ARFTGVWSLCKTKMVCQGSEE--------------------------------------- 78
Query: 194 AEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDS-- 251
+ D ++++ G +L +K HGGCGR QP IR+ GL L A + ED+
Sbjct: 79 ------DADEEQQQQQQQGANLLGRRKGAHGGCGRRQPKIRKEGLTLLAHYAKETEDADL 132
Query: 252 --------QEKKIPL--------------------------------------TGKGVLL 265
Q +KI L G G L
Sbjct: 133 APRPLLPDQVQKILLQISDADCVSLGLNPEWSRPEWMIITVLPVPPPQVRPSVVGDGTGL 192
Query: 266 ---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQ 322
DDLT+KLADI+K N L R+E G THV+ E +LQ+HVAT+ DN + GLP A Q
Sbjct: 193 RSQDDLTYKLADILKANASLKRHEQDGGPTHVVNEFWDLLQYHVATMMDNQISGLPVAQQ 252
Query: 323 KSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTF 382
K G+P+K I+ RLKGKEGR+RGNLMGKRVDFSARTVIT DPN+ ID+VGVPRSI +N+TF
Sbjct: 253 KGGRPIKGIRQRLKGKEGRLRGNLMGKRVDFSARTVITGDPNISIDEVGVPRSICRNLTF 312
Query: 383 PEIVTPFNMD 392
PEIV +N D
Sbjct: 313 PEIVNDYNRD 322
>gi|33326207|gb|AAQ08513.1| RNA polymerase II largest subunit [Pinus nigra]
Length = 1013
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 145/325 (44%), Positives = 196/325 (60%), Gaps = 21/325 (6%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H+ LAKP++H+GF+ + ILRCVCF CS++L + + LK K R + + D
Sbjct: 1 HLXLAKPMYHIGFLKTVLSILRCVCFNCSRILADEDDHRFKQA-LKVKNPKHRLKK-VLD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK--HV 199
CK K CEGGD +D +D +D + + KK+ HGGCG QP I G+ + AE+K
Sbjct: 59 CCKNKTKCEGGDVID--EDQGQDGDE-EVKKKRHGGCGAQQPKITIDGMKIIAEYKAPRK 115
Query: 200 NEDSQEKKIP--------LTGKGVL-LNKKQGHGGCGRYQPN---IRRSGLDLTAEWKHV 247
D QE+ +P L+ + VL + K+ C N R + L
Sbjct: 116 KADEQEQLMPEPAERKQQLSAERVLNVLKRITDEECQMLGLNPKYARPDWMILQVLPVPP 175
Query: 248 NEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVA 307
+ T + DDLTH+LA II+ N L + E +GA H+I E ++LQFH+A
Sbjct: 176 PPVRPSVMMDTTSRSE--DDLTHQLAMIIRHNENLKKQEKNGAPAHIITEFAQLLQFHIA 233
Query: 308 TLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRI 367
T DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDPN+ I
Sbjct: 234 TYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINI 293
Query: 368 DQVGVPRSIAQNMTFPEIVTPFNMD 392
DQ+GVP SIA N+T+PE VTP+NM+
Sbjct: 294 DQLGVPWSIALNLTYPETVTPYNME 318
>gi|188532149|gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron tulipifera]
Length = 1010
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 138/322 (42%), Positives = 197/322 (61%), Gaps = 18/322 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP+FH+GF+ + I+RCVCF CSK+LV K + + R R+ + D
Sbjct: 1 HLELAKPMFHIGFLKTVLSIMRCVCFNCSKILVDEEEHKFKQAQKIRNPKHRLRK--VLD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHV-- 199
CK K CEGGD++++ E+P K+ GGCG QP + G+ + AE+K
Sbjct: 59 ACKNKTRCEGGDDIEVRDQDLEEP-----VKKRRGGCGAQQPKLTVEGMKMIAEYKATRK 113
Query: 200 -NEDSQ------EKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNED 250
N+D + E+K L+ + VL + K+ C N + + D + + +
Sbjct: 114 KNDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCLLLGLNPKYARPDWMILQVLPIPPP 173
Query: 251 SQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
+ + DDLTH+LA II+ N L R E +GA H+I+E ++LQFH+AT
Sbjct: 174 PVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 233
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + ID++
Sbjct: 234 DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDEL 293
Query: 371 GVPRSIAQNMTFPEIVTPFNMD 392
GVP SIA N+T+PE VTP+N++
Sbjct: 294 GVPWSIALNLTYPETVTPYNIE 315
>gi|113957454|gb|ABI49114.1| RNA polymerase II largest subunit [Flavocetraria nivalis]
Length = 374
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 145/323 (44%), Positives = 191/323 (59%), Gaps = 27/323 (8%)
Query: 84 DLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLC 143
+LA PV+HVGF+TK K+L VC C K+LV S+P D + + ++R ++ LC
Sbjct: 1 ELAVPVYHVGFMTKIKKLLETVCHNCGKILVDESNPAFADALRRR--DPKKRFDLVWRLC 58
Query: 144 KGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----H 198
K K ICE M ++ D D + K HGGCG QP +RR GL LT WK
Sbjct: 59 KPKMICE--TTMALDDDAPSD--KAKEPKHDHGGCGNIQPEVRREGLRLTGTWKAQKGDE 114
Query: 199 VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEKK 255
NE Q +K P+T + L + +I+R GL EW +
Sbjct: 115 ENEGQQPEKKPITPQMALNIFRHISAD------DIKRMGLSNDYARPEWMIITVLPVPPP 168
Query: 256 IPLTGKGVL-------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVAT 308
V DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT
Sbjct: 169 PVRPSISVDGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVAT 228
Query: 309 LTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D
Sbjct: 229 YMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLD 288
Query: 369 QVGVPRSIAQNMTFPEIVTPFNM 391
+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 289 EVGVPRSIARTLTYPETVTPYNI 311
>gi|120561213|gb|ABM26992.1| RNA polymerase II largest subunit, partial [Capniomyces stellatus]
Length = 1024
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 147/327 (44%), Positives = 198/327 (60%), Gaps = 18/327 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PV+H GF+ K KIL VC+YCS+L + P + + K K S RR I++
Sbjct: 1 HIELARPVYHPGFIIKVKKILESVCWYCSRLKSDETEPGFQ-IAQKVK-NSNRRMKMIWE 58
Query: 142 LCKGKNICEGG---DEMDINKDGAEDPNSLQN---------KKQGHGGCGRYQPNIRRSG 189
+CK + +CE DE ++N E+ + + + +GHGGCG QP R+ G
Sbjct: 59 ICKTRTMCEASAEVDEREVNIGVGEEERNRETVDGMVGGGKRVRGHGGCGHRQPVFRKEG 118
Query: 190 LDLTAEWKHV--NEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWK 245
L L+A +K V E E K L+ VL + KK N+ + D L
Sbjct: 119 LKLSAVFKGVVGEEGVTEGKQGLSVTQVLQVLKKISREDAVAMGLNVEFARPDWLVITVM 178
Query: 246 HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFH 305
V S I + DDLT+KL DI+K N + E GA H+I E +LQFH
Sbjct: 179 PVAPMSVRPSIQVDATRQSEDDLTYKLNDILKANARVRSCELEGAPLHIIEEFESLLQFH 238
Query: 306 VATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNL 365
VAT +N++ GLP+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVI DPN+
Sbjct: 239 VATFMNNELSGLPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVIAGDPNI 298
Query: 366 RIDQVGVPRSIAQNMTFPEIVTPFNMD 392
IDQVGVPRSIA+N+T+PE+VTP+N+D
Sbjct: 299 EIDQVGVPRSIAKNLTYPEVVTPYNID 325
>gi|33326215|gb|AAQ08517.1| RNA polymerase II largest subunit [Nymphaea odorata]
Length = 1013
Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 140/323 (43%), Positives = 197/323 (60%), Gaps = 17/323 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP+FH+GF+ + ILRCVCF CS +L + + + ++R ++ + D
Sbjct: 1 HLELAKPMFHIGFMKTVLAILRCVCFNCSHILADEEDHRFKQALKIRNPKARLKK--VLD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK--HV 199
CK K CEGGD DI++D +D KK+ GGCG QP I G+ + AE+K
Sbjct: 59 CCKSKQKCEGGD--DIDEDQGQDLEDAPKKKK-RGGCGAMQPKITIEGMKIIAEYKVPRK 115
Query: 200 NEDSQEKKIP--------LTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNE 249
D QE+ +P L+ + VL + K+ C N + + D + + +
Sbjct: 116 KSDEQEQMLPEPVERKQQLSAERVLNVLKRISDEDCLLLGLNPKYARPDWMILQVLPIPP 175
Query: 250 DSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
+ + DDLTH+LA II+ N L R E +GA H+I+E ++LQFH+AT
Sbjct: 176 PPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 235
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + ID+
Sbjct: 236 FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDE 295
Query: 370 VGVPRSIAQNMTFPEIVTPFNMD 392
+GVP SIA NMT+PE VTP+N++
Sbjct: 296 LGVPWSIALNMTYPETVTPYNIE 318
>gi|324499938|gb|ADY39985.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 1867
Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 129/220 (58%), Positives = 151/220 (68%), Gaps = 51/220 (23%)
Query: 224 GGCGRYQPNIRRSGLDLTAEWK-HVNEDSQEKKIPLTGKGVL------------------ 264
GGCGRYQP+ RR+G+++ AEWK HVNED+QE+KI LT + L
Sbjct: 173 GGCGRYQPSYRRTGIEINAEWKRHVNEDTQERKIVLTAERALEIFKGISDADCLVIGMDP 232
Query: 265 --------------------------------LDDLTHKLADIIKCNNELIRNESSGAAT 292
DDLTHKL+DI+K NN+L RNE++GAA
Sbjct: 233 RFARPDWMIAQVLPVPPLAVRPAVVTFGSARNQDDLTHKLSDIVKTNNQLRRNEANGAAA 292
Query: 293 HVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 352
HVIAE++K+LQ+HVATL DN +PGLP A QK G+PLK+IK RLKGKEGRIRGNLMGKRVD
Sbjct: 293 HVIAEDVKLLQYHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVD 352
Query: 353 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
FSARTVITPDPNL ID VGVPR+IAQNMTFPEIVTPFN+D
Sbjct: 353 FSARTVITPDPNLPIDTVGVPRTIAQNMTFPEIVTPFNVD 392
>gi|125657578|gb|ABN48852.1| RNA polymerase II largest subunit [Globigerinita glutinata]
Length = 359
Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 140/321 (43%), Positives = 199/321 (61%), Gaps = 10/321 (3%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA+P +HVGF+ T+++LRCVC+YCS LL + + L+ R
Sbjct: 1 ECPGHFGHIELARPCYHVGFLPVTLRVLRCVCYYCSSLLCADPNSDAFKAALRIPS-PRE 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRR-SGLDLT 193
R I LC+ K C GD++D + D N + ++ + GCG QP R+ +G+ +
Sbjct: 60 RLIEILHLCEKKKFCGSGDKIDEDGD-----NENKEEENVYSGCGHAQPKFRKGTGVKIE 114
Query: 194 AEWKHVNEDS-QEKKIPLTGKGV-LLNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNED 250
E+ N S +++K L+ + V L+ K+ C + + S D L + V+
Sbjct: 115 IEFPDGNNTSGEDRKQFLSARDVHLIFKRIKEEDCRVLGFDPKYSPPDWLLIQVLPVSPP 174
Query: 251 SQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
+ + + G DDLTHK+ DI+K NN L R E+ G H++ E +++LQFHV T+
Sbjct: 175 AVRPFVLMDGMRPSQDDLTHKVYDIMKTNNALKRQEARGVPDHILEELVELLQFHVTTMI 234
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DN++ G P+A QKSGKP+K+++ RL GK GR+RGNLMGKR DFSARTVI DPNL ID+V
Sbjct: 235 DNEVTGQPQAKQKSGKPIKSLRERLVGKAGRVRGNLMGKRCDFSARTVIGGDPNLSIDEV 294
Query: 371 GVPRSIAQNMTFPEIVTPFNM 391
GVPRSIA N+T+PE VT FN+
Sbjct: 295 GVPRSIALNLTYPERVTKFNL 315
>gi|3169691|gb|AAC17924.1| RNA polymerase II largest subunit, partial [Pyropia yezoensis]
Length = 1685
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 151/336 (44%), Positives = 196/336 (58%), Gaps = 42/336 (12%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVS----PSHPKVRDVVLKTKG 130
ECPGHFG I+LAKP+FH GF+ T+K+LRCVC++CS+LL++ P K+ V K +
Sbjct: 1 ECPGHFGFIELAKPMFHAGFMGMTLKLLRCVCYFCSRLLITKVDDPGVQKILKAVSKMES 60
Query: 131 QSRRRQAFIYDLCKGKN--ICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRS 188
++ R + + LC + I E D GA GCG QP +R
Sbjct: 61 RAARLR-IMSGLCTARKCLITESPD------GGAST------------GCGHEQPKYKRE 101
Query: 189 GLDLTAEWKHVNED-----SQEKKIPLTGKGVLL-------NKKQGHGGCGRYQPNIRRS 236
GL + A++ D + E+K ++ + VL N + G R+ R
Sbjct: 102 GLKIRADFPDDGADVDGAPANERKQNVSAEKVLSVFKRISDNDAELMGLSARWA---RPE 158
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
L LT + T +G DDLTH LA I+K N L E GA H +A
Sbjct: 159 WLILTLLPVPPPHVRTSIMMDATQRGE--DDLTHNLAVIVKNNTALRNLEGHGAPAHRLA 216
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
E I +LQFHVAT +ND+PG+PRA QKSG+PLK+I RLKGKEGR+RGNLMGKRVDFSAR
Sbjct: 217 EQIFLLQFHVATYMNNDLPGMPRAAQKSGRPLKSISQRLKGKEGRLRGNLMGKRVDFSAR 276
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVITPDPNLR+DQVGVP SIA+N+TFPE VT +N++
Sbjct: 277 TVITPDPNLRLDQVGVPFSIAKNLTFPETVTAYNIE 312
>gi|188532143|gb|ACD63083.1| RNA polymerase II largest subunit [Ceratophyllum demersum]
Length = 1010
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/323 (42%), Positives = 193/323 (59%), Gaps = 20/323 (6%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP+FH+GF+ ++RC+CF CSK+L K + V + R R+ + D
Sbjct: 1 HLELAKPMFHIGFLKTVCNLMRCICFNCSKILADEEDHKFKQAVKIKNPKHRLRK--VMD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK---- 197
CK K CEGGDEMD+ ++P K+ GGCG QP I G+ + AE+K
Sbjct: 59 ACKSKQKCEGGDEMDVQGQDEDEP-----XKKKRGGCGSQQPKIAVEGMKIIAEFKAPKK 113
Query: 198 HVNEDSQ-----EKKIPLTGKGVL-LNKKQGHGGCGR--YQPNIRRSGLDLTAEWKHVNE 249
+E Q E+K L+ + VL + K+ C + P R + + +
Sbjct: 114 RSDEQDQLPEPVERKQQLSAERVLSILKRISDEDCVLLGFNPKYARPDW-MILQVLPIPP 172
Query: 250 DSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
+ + DDLTH+LA II+ N L R E +GA H+I+E ++LQFH+AT
Sbjct: 173 PPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 232
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DN++P PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + ID+
Sbjct: 233 FDNELPXQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDE 292
Query: 370 VGVPRSIAQNMTFPEIVTPFNMD 392
+GVP SIA N+T+PE VTP+N++
Sbjct: 293 LGVPWSIALNLTYPETVTPYNIE 315
>gi|33326213|gb|AAQ08516.1| RNA polymerase II largest subunit [Magnolia x soulangeana]
Length = 1010
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 137/322 (42%), Positives = 197/322 (61%), Gaps = 18/322 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP+FH+GF+ + I+RCVCF CSK+LV K + + R R+ + D
Sbjct: 1 HLELAKPMFHIGFLKTVLSIMRCVCFNCSKILVDEEDHKFKQSQKIRNPKHRLRK--VLD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHV-- 199
CK K C+GGD++++ E+P K+ GGCG QP + G+ + AE+K
Sbjct: 59 ACKNKTKCDGGDDIEVRDQDLEEP-----VKKRRGGCGAQQPKLTVEGMKMIAEYKATRK 113
Query: 200 -NEDSQ------EKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNED 250
N+D + E+K L+ + VL + K+ C N + + D + + +
Sbjct: 114 KNDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCLLLGLNPKYARPDWMILQVLPIPPP 173
Query: 251 SQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
+ + DDLTH+LA II+ N L R E +GA H+I+E ++LQFH+AT
Sbjct: 174 PVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 233
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + ID++
Sbjct: 234 DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDEL 293
Query: 371 GVPRSIAQNMTFPEIVTPFNMD 392
GVP SIA N+T+PE VTP+N++
Sbjct: 294 GVPWSIALNLTYPETVTPYNIE 315
>gi|300394298|gb|ADK11775.1| DNA-directed RNA polymerase II subunit one [Boletopsis
leucomelaena]
Length = 399
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 145/325 (44%), Positives = 186/325 (57%), Gaps = 25/325 (7%)
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIY 140
GHI+LA+PVFH GFV K KIL CVC C KL S P D + + + R ++
Sbjct: 1 GHIELARPVFHPGFVVKVKKILECVCVNCGKLKADISDPXFGDRIRHVR-DPKARMTIVW 59
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
CK K +CE + + N+ D + K+GHGGCG QP IR+ GL L ++K
Sbjct: 60 AFCKTKMVCEADEPKEENEVNEND-----DVKKGHGGCGAVQPQIRKEGLKLFVQYKKSK 114
Query: 201 EDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA--------EWKHVNEDSQ 252
++ +E K L L + + + I S L L EW +
Sbjct: 115 DEDEETK-SLQPDKRLFPPSEVYAVLRK----ISDSDLHLLGLSDEYARPEWMILTVMPV 169
Query: 253 EKKIPLTGKGV------LLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHV 306
V DDLT KL DIIK + + R E GA HVI E ++LQFHV
Sbjct: 170 PPPPVRPSIAVDGGTMRSEDDLTFKLGDIIKASANVRRCEQEGAPAHVITEFEQLLQFHV 229
Query: 307 ATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLR 366
AT DND+ G+P+A+QKSG+P+KAI++RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL
Sbjct: 230 ATYMDNDIAGIPQALQKSGRPVKAIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLE 289
Query: 367 IDQVGVPRSIAQNMTFPEIVTPFNM 391
+D+VGVPRSIA N+T+PE VTP N+
Sbjct: 290 LDEVGVPRSIAMNLTYPERVTPHNI 314
>gi|336041419|gb|AEH95287.1| RNA polymerase II largest subunit [Malawimonas jakobiformis]
Length = 1042
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/331 (43%), Positives = 197/331 (59%), Gaps = 30/331 (9%)
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK-VRDVVLKTKGQSRRRQAFI 139
GH++LAKPVFH GF +K+LRCVCFYCS+LL S P+ +R + LK + R +
Sbjct: 1 GHVELAKPVFHYGFFKTVVKVLRCVCFYCSRLLADTSDPRFLRALTLKNRKHRFRE---V 57
Query: 140 YDLCKGKNICEGGDEMDINKDG--------AEDPNSLQN------KKQGHGGCGRYQPNI 185
+D C G+ +CE G+ DG DP+S Q KK HGGCG QP+I
Sbjct: 58 HDCCVGRKVCEAGE------DGRRADPLGVLNDPSSQQQVPGAPGKKAAHGGCGNVQPHI 111
Query: 186 R-RSGLDLTAEWKHVNEDSQEKKIPLTGK---GVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
+ S L L AE+ ++++Q +K+ LT + +L + + P + R +
Sbjct: 112 KVESMLRLVAEFPKRDDEAQPRKMVLTPEKVHNILSHISDDDCRALGFNPALARPDW-MV 170
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + I + DDLT KL DI++ N EL R +GA H+I E M
Sbjct: 171 ISVLPVPPPAVRPPIAMDSTTAAQDDLTFKLGDIVRTNVELKRKIKAGAPQHIIDEFWLM 230
Query: 302 LQFHVATLTDNDMPGLPRAMQK-SGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
LQ+HVA + + D+ G P+ +QK SG+ LK+I++RLKGK GRIRGNLMGKRVDFSAR+VIT
Sbjct: 231 LQYHVANIIETDISGFPKPVQKGSGRVLKSIRSRLKGKHGRIRGNLMGKRVDFSARSVIT 290
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DPNL +++VGVPR+IA N+T+PE VTPFN+
Sbjct: 291 ADPNLSVNEVGVPRTIALNLTYPETVTPFNI 321
>gi|45935329|gb|AAS79686.1| RNA polymerase II large subunit [Podocarpus macrophyllus]
Length = 1013
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 142/325 (43%), Positives = 197/325 (60%), Gaps = 21/325 (6%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP++H+GF+ + ILRCVCF CS++L + + LK K R + + D
Sbjct: 1 HLELAKPMYHIGFLKTILSILRCVCFNCSRILADEDDHRFKQA-LKVKNPKHRLKK-VLD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK--HV 199
CK K CEGGD +D +D +D + + KK+ GGCG QP I G+ + AE+K
Sbjct: 59 CCKNKTKCEGGDAID--EDQVQDGDE-EVKKKRQGGCGAQQPKIYIDGMKIVAEYKAPRK 115
Query: 200 NEDSQEKKIP--------LTGKGVL-LNKKQGHGGCGR--YQPNIRR-SGLDLTAEWKHV 247
D QE+ +P L + VL + K+ C + P R + L
Sbjct: 116 KADDQEQLMPEPAERKQQLPAERVLNVLKRISDEECQMLGFNPKYARPDWMILQVLPVPP 175
Query: 248 NEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVA 307
+ T + DDLTH+LA II+ N L + E +GA H+I+E ++LQFH+A
Sbjct: 176 PPVRPAVMMDTTSRSE--DDLTHQLAMIIRHNETLKKQEKTGAPAHIISEFAQLLQFHIA 233
Query: 308 TLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRI 367
T DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDPN+ I
Sbjct: 234 TYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINI 293
Query: 368 DQVGVPRSIAQNMTFPEIVTPFNMD 392
D++GVP SIA N+T+PE VTP+N++
Sbjct: 294 DELGVPWSIALNLTYPETVTPYNIE 318
>gi|77176713|gb|ABA64471.1| DNA-dependent RNA polymerase II largest subunit [Cyanophora
paradoxa]
Length = 411
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 148/317 (46%), Positives = 194/317 (61%), Gaps = 31/317 (9%)
Query: 91 HVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQA---FIYDLCKGKN 147
H+GF+ +K+LRCVCF CSK+L + DV K + +R +A + D+CK K+
Sbjct: 1 HIGFLNTILKVLRCVCFNCSKILCDKN-----DVRFKAAQRIKRPEAKLRAVMDICKSKS 55
Query: 148 ICEGGDEMDINKDGAEDPNSLQNKKQG---HGGCGRYQPNIRRSGLDLTAEWKHVNEDSQ 204
+CEGG+E+D+N + DP + K G GCG QP I + GL LTAE+K +++Q
Sbjct: 56 MCEGGEELDMNV--SLDPAAAD--KAGVPKRVGCGNPQPKIMKDGLKLTAEFKKTLDENQ 111
Query: 205 EKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNE-----DSQEKK 255
EKKI L + V + K+ C R GLD +W + +
Sbjct: 112 EKKIILMPEQVYNIFKRISDEDC-------RHMGLDPRWARPDWFCITHLPVPPAAVRPG 164
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
I + DDLT KL DI++ N +L +NE + A H I E + LQ+H+AT DN++P
Sbjct: 165 IAMNSVQRAEDDLTSKLMDIVRANAQLRKNEQNAAPAHHINELVTQLQYHIATYMDNELP 224
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G+P A Q+SG+ LK+I RLKGKEGRIRGNLMGKRVDFSARTVIT DPNL IDQVGVPRS
Sbjct: 225 GIPPAQQRSGRALKSICQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLGIDQVGVPRS 284
Query: 376 IAQNMTFPEIVTPFNMD 392
IA N+T PEIVTP+NMD
Sbjct: 285 IALNLTTPEIVTPYNMD 301
>gi|12642614|gb|AAK00311.1|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga
brevicollis]
Length = 1743
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 146/373 (39%), Positives = 188/373 (50%), Gaps = 110/373 (29%)
Query: 76 CPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRR 135
CPGHFGHI LAKPVFH GF+ K I +LRCVC YCSKL V S +++ ++ +TK + R
Sbjct: 1 CPGHFGHIVLAKPVFHAGFLPKIISVLRCVCLYCSKLRVEHSDQQLQAILSQTKDNPKHR 60
Query: 136 QAFIYDLCKGKNICEGGDEMD-INKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
+ LC K C + D N +G QP + S
Sbjct: 61 LQAVSRLCSNKRQCHRDEPPDTFNPEG--------------------QPEVALSA----- 95
Query: 195 EWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRS-----GLDLTAEWKHVNE 249
GGCG+ QP +RRS L L EW+ VN+
Sbjct: 96 -----------------------------GGCGKMQPRVRRSQEEGRTLQLLGEWEEVND 126
Query: 250 DSQEKKIPLTGKGVL--------------------------------------------- 264
D ++K P+T VL
Sbjct: 127 DEVDRKRPITAAEVLKCFRGISDEDCRIIGFDPVYTRPDFMIIEVLPVPPLAVRPSVELG 186
Query: 265 -----LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPR 319
DDLT++L DIIK N L N ++GA H+I E ++ +QF VATL DN++P +P+
Sbjct: 187 ESGHSADDLTYQLGDIIKTNISLQENIANGATPHMIEECVEYIQFKVATLMDNNLPHMPQ 246
Query: 320 AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 379
+ Q+SG+P+KAI RLKGKEGR+RGNLMGKRVDFSARTVITPDPNL IDQVGVPR++A
Sbjct: 247 SQQRSGRPIKAISQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLAIDQVGVPRTVAAK 306
Query: 380 MTFPEIVTPFNMD 392
+T PE VT FN++
Sbjct: 307 LTVPERVTNFNLN 319
>gi|110669656|gb|ABG81922.1| RNA polymerase II largest subunit, partial [Acarospora laqueata]
Length = 1016
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 151/375 (40%), Positives = 189/375 (50%), Gaps = 111/375 (29%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA PVFHVGF+TK K+L VC C K+LV +P D + +R
Sbjct: 1 ECPGHFGHIELATPVFHVGFMTKIKKLLETVCHNCGKILVDEDNPAFADT--QRHRDPKR 58
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
R ++ LCK K ICE
Sbjct: 59 RFDAVWRLCKPKLICETS------------------------------------------ 76
Query: 195 EWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHV-----NE 249
ED+ P GK V HGGCG QP +RR GL LT WK + NE
Sbjct: 77 ----TVEDNDFDSKPEKGKKV-----SRHGGCGNVQPEVRREGLRLTGTWKAMKGDEENE 127
Query: 250 DSQEKKIPL--------------------------------------------------- 258
Q +K P+
Sbjct: 128 AQQPEKKPITPQMALNIFRHISPEDARKMGLSNDYARPEWMIITVLPVPPPPVRPSISVD 187
Query: 259 -TGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
TG+G+ DDLT+KL DII+ N + R E G+ HV++E +LQFHVAT DND+ G
Sbjct: 188 GTGQGMRGEDDLTYKLGDIIRANGNVRRCEQEGSPAHVVSEFEALLQFHVATYMDNDIAG 247
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 248 QPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 307
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP+N+
Sbjct: 308 ARTLTYPETVTPYNI 322
>gi|83320446|gb|ABC02850.1| RNA polymerase II largest subunit, partial [Mortierella
verticillata]
Length = 1016
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 146/322 (45%), Positives = 195/322 (60%), Gaps = 18/322 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPV+ GF+TK KIL CVC+ CSKL + ++ K V + + R +++
Sbjct: 1 HIELAKPVYLNGFLTKVKKILECVCYSCSKLKIDDNNSKF--VRARRIRDPKVRLKAVWE 58
Query: 142 LCKGKNICEGGDEMDINKDGAE-DPNSL-QNKKQGHGGCGRYQPNIRRSGLDLTAEWK-H 198
L K K +CEGGD++D E D N + + KK HGGCG QP R+ GL L+ +K +
Sbjct: 59 LAKSKMVCEGGDDIDAEMQEEEVDENGMPRPKKISHGGCGHRQPIFRKEGLGLSVNFKAN 118
Query: 199 VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVN-----ED 250
++DSQ + GK L H +I GL EW +
Sbjct: 119 ASDDSQPE-----GKRTLTPSDAYHILKRISDEDIEAMGLSPEFARPEWMIMTVLPIPPL 173
Query: 251 SQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
+ I + G DDLTHKL IIK N ++ R G H+I ++ ++LQ+HVAT
Sbjct: 174 AVRPSIQMDGSSTGEDDLTHKLFAIIKTNADVYRCAQDGTPAHLIQQHEQLLQYHVATYM 233
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DND+ G P A K+G+PLK+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL ID+V
Sbjct: 234 DNDIAGQPPAAHKNGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDEV 293
Query: 371 GVPRSIAQNMTFPEIVTPFNMD 392
GVPRSIA+ +T+PE+VTP+N+D
Sbjct: 294 GVPRSIARTLTYPELVTPYNID 315
>gi|38091172|emb|CAE46440.1| RNA polymerase II largest subunit [Gymnochlora stellata]
Length = 421
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 146/327 (44%), Positives = 198/327 (60%), Gaps = 18/327 (5%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+L PV HVGF+ + +++LRCVCF+CS+LL+ PK R + K K ++
Sbjct: 1 ECPGHFGHIELGAPVLHVGFLPRILQLLRCVCFHCSRLLIDSDGPKARRIYNKYKDNPQK 60
Query: 135 R-QAFIYDLCKGKNICEGGDEMDINK---DGAEDPNSLQNKKQGHGGCGRYQPNIRRSGL 190
R AF+ + + K C GG ++D K DG +DP KK+ GCG P R+ G+
Sbjct: 61 RLHAFLKER-QSKTECNGGTDLDDVKKTDDGYDDP-----KKRSSSGCGNALPKYRKKGI 114
Query: 191 DLTAEWKH----VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD-LTAEWK 245
++ E+ V ED KKI K + K+ C N+ D
Sbjct: 115 EIHMEFPRDANMVGED--HKKIISAEKIYSIFKRIRKEDCELLGFNVHFGRPDCFILTVL 172
Query: 246 HVNEDSQEKKIPL-TGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQF 304
V + + + DDLT+K+A+I+K NN L R E+ GAA+HV+ + +LQ+
Sbjct: 173 PVPPPAVRPSVRFDSSGASSSDDLTYKIAEIVKANNALKRQEADGAASHVLDTIVDVLQY 232
Query: 305 HVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
VATL DN++P P++ Q+SGKP+K+I+ RL GK GR+RGNLMGKR DFSARTVIT DPN
Sbjct: 233 QVATLIDNELPYYPQSTQRSGKPIKSIRQRLVGKGGRVRGNLMGKRCDFSARTVITADPN 292
Query: 365 LRIDQVGVPRSIAQNMTFPEIVTPFNM 391
L IDQVGVPRSIA N+T+PE VT FN+
Sbjct: 293 LEIDQVGVPRSIAMNLTYPERVTRFNL 319
>gi|83320468|gb|ABC02861.1| RNA polymerase II largest subunit, partial [Orphella haysii]
Length = 750
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 144/337 (42%), Positives = 191/337 (56%), Gaps = 36/337 (10%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PV+H+GF+ K KIL CVC+YCSKL + P ++ K+ +R ++D
Sbjct: 1 HIELARPVYHIGFIIKVKKILECVCWYCSKLKADETDPAF--ILAKSIQDPNKRMKRVWD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQN----------------KKQGHGGCGRYQPNI 185
+CK + ICE + + A N L N +++GHGGCG QP
Sbjct: 59 ICKARTICESTGDDGSGEQLASSINELPNESERMRNAVDGMLGDKRRKGHGGCGHRQPIF 118
Query: 186 RRSGLDLTAEWKH------VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD 239
R+ GL L A +K V E Q+ + + VL P+ R
Sbjct: 119 RKEGLKLNATFKAGSGEEGVAEGKQQLSV-IQVLQVLKRITDDDSFAMGINPDYSR---- 173
Query: 240 LTAEWK-----HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW V S I + DDLT+KL DI+K N + E GA H+
Sbjct: 174 --PEWMILSVMPVPPMSVRPSIQMDATRQSEDDLTYKLNDILKANARVRSCEMEGAPLHI 231
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I E +LQFHVAT +N++ GLP+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFS
Sbjct: 232 IEEFEALLQFHVATFMNNELSGLPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFS 291
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
ARTVIT DPN+ IDQVGVPRSIA+N+T PE VTP+N+
Sbjct: 292 ARTVITGDPNISIDQVGVPRSIARNLTVPEAVTPYNI 328
>gi|110669641|gb|ABG81915.1| RNA polymerase II largest subunit [Umbilicaria mammulata]
Length = 1014
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 151/375 (40%), Positives = 191/375 (50%), Gaps = 113/375 (30%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA PVFHVGF+TK K+L VC C K+LV S D L+ + RR
Sbjct: 1 ECPGHFGHIELATPVFHVGFMTKIKKLLETVCHNCGKILVDESTAAFADA-LRFRDPKRR 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
A I+ LCK K +CE D +SL++ K+
Sbjct: 60 FDA-IWRLCKPKMVCETM--------AVPDDDSLKDSKE--------------------- 89
Query: 195 EWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNE 249
K HGGCG QP +RR GL LT WK NE
Sbjct: 90 ------------------------PKHDHGGCGNIQPEVRREGLKLTGTWKAQKGDEENE 125
Query: 250 DSQEKKIPL--------------------------------------------------- 258
+K P+
Sbjct: 126 GQHPEKKPITPQMALNIFRHISTEEIRKMGLSNDYARPEWMIITVLPVPPPPVRPSISVD 185
Query: 259 -TGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
TG+G+ DDLT+KL DII+ N + R E+ G+ HV++E +LQFHVAT DND+ G
Sbjct: 186 GTGQGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVSEFESLLQFHVATYMDNDIAG 245
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 246 QPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 305
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP+N+
Sbjct: 306 ARTLTYPETVTPYNI 320
>gi|90309103|gb|ABD93705.1| RNA polymerase II largest subunit [Cantharocybe gruberi]
Length = 402
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/321 (44%), Positives = 190/321 (59%), Gaps = 16/321 (4%)
Query: 80 FGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFI 139
FGHI+L +PVFH GF+ KI C+C C KL S P D + + + R A +
Sbjct: 1 FGHIELXRPVFHPGFIVXXNKIPECICVNCGKLKADISDPNFADKIRHIR-DPKARMAVV 59
Query: 140 YDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHV 199
++ CK K +CE D + DGAE+ + K+GHGGCG QP IR+ GL L ++K
Sbjct: 60 WNHCKTKMVCETDDTKE-EADGAEN----EEPKKGHGGCGHVQPQIRKEGLKLFVQYKKA 114
Query: 200 NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGL-DLTA--EWKHVN-----EDS 251
+D +E K K ++ + ++ GL D A EW +
Sbjct: 115 KDDDEEVKSLQPDKXLITASEVYTAFKKMSDSDLHXLGLSDEYARPEWMILTVMPVPPPP 174
Query: 252 QEKKIPLTGKGVLL-DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
I + G + DDLT+KL DIIK + + R E GA HVI E ++LQFHVAT
Sbjct: 175 VRPSIAVDGGAMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVITEFEQLLQFHVATYM 234
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DND+ G+ +A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSAR VIT DPNL +D+V
Sbjct: 235 DNDIAGISQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARAVITGDPNLELDEV 294
Query: 371 GVPRSIAQNMTFPEIVTPFNM 391
GVP+SIA N+TFPE P+N+
Sbjct: 295 GVPKSIAMNLTFPE-RAPYNI 314
>gi|110669645|gb|ABG81917.1| RNA polymerase II largest subunit, partial [Hypocenomyce scalaris]
Length = 1027
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 151/375 (40%), Positives = 193/375 (51%), Gaps = 100/375 (26%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA PVFHVGF+TK K+L VC C K+LV +P D L+ + +R
Sbjct: 1 ECPGHFGHIELATPVFHVGFMTKIKKLLETVCHNCGKILVDEHNPAFADA-LRYRDPKKR 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
A I+ LCK K +CE +D E+ +S + K G G +P
Sbjct: 60 FDA-IWRLCKPKLVCE----TLAAQDKEEEDSSTRTGKIGKQGGRDKEP----------- 103
Query: 195 EWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNE 249
HGGCG QP +RR GL LT WK NE
Sbjct: 104 -------------------------AHDHGGCGNIQPEVRRDGLKLTGSWKAQKGDEENE 138
Query: 250 DSQEKKIPL--------------------------------------------------- 258
Q +K PL
Sbjct: 139 GQQPEKKPLTPQMALNIFRHISDEEIKKMGLSNDYVRPEWMIITVLPVPPPPVRPSISVD 198
Query: 259 -TGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
TG+G+ DDLT+KL DII+ N + R E+ G+ H+ + +LQFHVAT DND+ G
Sbjct: 199 GTGQGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHISKDFEDLLQFHVATYMDNDIAG 258
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 259 QPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 318
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE V P+N+
Sbjct: 319 ARTLTYPETVAPYNI 333
>gi|188532153|gb|ACD63088.1| RNA polymerase II largest subunit [Papaver orientale]
Length = 1010
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/322 (42%), Positives = 193/322 (59%), Gaps = 18/322 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP+FH+GF+ + I+RCVCF CSK+L K + + R R+ + D
Sbjct: 1 HLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHKFKQSQRIKNPKHRLRK--VLD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
CK K C+GGDE+D+ + E P K+ GGCG QP + G+ + AE+K +
Sbjct: 59 ACKNKTKCDGGDEIDVQDEDLEKP-----VKKSRGGCGAQQPKLTIEGMKMIAEYKIQRK 113
Query: 202 DSQ---------EKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNED 250
+ E+K LT + VL + K+ C N + + D + + +
Sbjct: 114 KTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYARPDWMILQVLPIPPP 173
Query: 251 SQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
+ + DDLTH+LA II+ N L + E +GA H+I E ++LQFH+AT
Sbjct: 174 PVRPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIILEFAQLLQFHIATYF 233
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + ID++
Sbjct: 234 DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDEL 293
Query: 371 GVPRSIAQNMTFPEIVTPFNMD 392
GVP SIA N+T+PE VTP+N++
Sbjct: 294 GVPWSIALNLTYPETVTPYNIE 315
>gi|83320438|gb|ABC02846.1| RNA polymerase II largest subunit, partial [Conidiobolus coronatus]
Length = 749
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 147/328 (44%), Positives = 201/328 (61%), Gaps = 31/328 (9%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI L+KPV+H GF++K KIL CVC+ CS+L V SHPK+R++ K ++ R ++D
Sbjct: 1 HISLSKPVYHPGFISKAKKILECVCYICSRLKVDESHPKMRNIRGK---NAKIRFKIVWD 57
Query: 142 LCKGKNICEGGDEMDINKDGAE--DPNSLQNKKQG--HGGCGRYQPNIRRSGLDLTAEWK 197
+ K K ICE +D N++ DP + +G GCG P IR+ G+ L A +K
Sbjct: 58 VSKTKTICE----VDSNENSGPNLDPTDPSSILEGPTREGCGHRHPTIRKEGMKLFAVFK 113
Query: 198 HVNE--DS----QEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVN 248
+ DS E +IPL L K+ + ++ + GL EW +
Sbjct: 114 ASKQADDSGFGEPEGRIPLPPSKALEIFKRID------EADVDKMGLSWEFARPEWMIIT 167
Query: 249 E-----DSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
+ I + G DDLT+KL+DIIK N L S G+ H++ E+ + LQ
Sbjct: 168 ALAVPPPAVRPSIMMDGTNRGQDDLTYKLSDIIKTNKSLEVALSDGSPGHILEEHEQYLQ 227
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
+HVAT DND+ GLP+++QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DP
Sbjct: 228 YHVATYMDNDIAGLPQSLQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDP 287
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
NL IDQVGVPRSIA+N+T+PE VTP+N+
Sbjct: 288 NLSIDQVGVPRSIARNLTYPERVTPYNI 315
>gi|125657568|gb|ABN48847.1| RNA polymerase II largest subunit [Bathysiphon flexilis]
Length = 501
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/330 (43%), Positives = 195/330 (59%), Gaps = 34/330 (10%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFG I+LA+P +HVGF+T T+++LRCVCF+CS+LL K R
Sbjct: 1 ECPGHFGRIELARPCYHVGFLTMTLRLLRCVCFHCSQLLAD-----------KNSDNPRL 49
Query: 135 RQAFIYDLCKGKNICEGGDEMDIN-KDGAEDPNSLQNKKQGHGGCGRYQPNIRR-SGLDL 192
R +Y LC+ + C G ++D N D ED N + N GCG+ QP R+ G+ +
Sbjct: 50 RSIELYHLCEKQKYCGSGQKLDENNSDNDEDTNMVSN-----SGCGQIQPKYRKGQGVKI 104
Query: 193 TAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRS-GLD---LTAEWKHVN 248
E+ +D+ + + + L+ K+ HG R ++ R G EW ++
Sbjct: 105 EIEFL---DDNNKDRDSGEDRKQYLSAKRVHGIFSRISDSVSRILGFKPEFCRPEWMLIS 161
Query: 249 EDSQEKKIPLTGKGVLLD-------DLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
P VL+D DLTHK+ DI+K NN L R E+ G HV+ E +++
Sbjct: 162 --VLPISPPCVRPFVLMDGMRPSQDDLTHKVYDILKTNNALRRQEARGVPEHVLEELVEL 219
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQFHV T+ DN++ G P+A QKSGKP+KA++ RL GK GR+RGNLMGKR DFSARTVI
Sbjct: 220 LQFHVTTMMDNEVSGQPQAKQKSGKPIKALRERLVGKAGRVRGNLMGKRCDFSARTVIGG 279
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DPNL ID+VG+PRSIA N+T+PE VT +N+
Sbjct: 280 DPNLSIDEVGIPRSIALNLTYPERVTKYNL 309
>gi|120561209|gb|ABM26990.1| RNA polymerase II largest subunit, partial [Phragmidium sp. MB]
Length = 1013
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/324 (42%), Positives = 192/324 (59%), Gaps = 16/324 (4%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HIDLA+ V+HVGF+ + KIL CVC C KL +++ + +RR ++
Sbjct: 1 HIDLARKVYHVGFMNRVKKILECVCVKCGKLKADIRTDPALELLYRRTKDPKRRFVAVHQ 60
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
LC+GKNICE + D ED +GHGGCG YQP IR+ GL + ++
Sbjct: 61 LCRGKNICETDSTDEPPPDHPEDIPPEDQPPKGHGGCGHYQPQIRKEGLKMFLQYTRRKG 120
Query: 202 D-----------SQEKKIPLTGKGVLLNK--KQGHGGCGRYQPNIRRSGLDLTAEWKHVN 248
D ++ + +P +L++ + G + R + LTA +
Sbjct: 121 DDDEDGGGTLAGTERRPLPAHDAYNILHQIPDEDLRIMGLHTEEARPEWMVLTA--LPIP 178
Query: 249 EDSQEKKIPLTGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVA 307
I + G DDLT+KLA++IK N L + +G+ H+I E +LQ+H+A
Sbjct: 179 PPPVRPSIAMDGGATRGEDDLTYKLAEVIKTNKALGEHILAGSPAHIITEFETLLQWHIA 238
Query: 308 TLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRI 367
T DND+PG P+AMQKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL++
Sbjct: 239 TYMDNDLPGQPQAMQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQL 298
Query: 368 DQVGVPRSIAQNMTFPEIVTPFNM 391
DQVGVP SIA+N+T+PE VTP+N+
Sbjct: 299 DQVGVPYSIARNLTYPERVTPYNI 322
>gi|160331837|ref|XP_001712625.1| rpb1 [Hemiselmis andersenii]
gi|159766074|gb|ABW98300.1| rpb1 [Hemiselmis andersenii]
Length = 1464
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 150/399 (37%), Positives = 221/399 (55%), Gaps = 38/399 (9%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDR 62
M + + + VK +QF ILSP EIR SV I+ + E PK GGLMDPR G +D+
Sbjct: 2 MVNDQIEEKKVKYIQFSILSPQEIRNYSV--ACIESDLSFENNSPKTGGLMDPRLGAVDK 59
Query: 63 SSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVR 122
C + + +CPG+FGH++LAKPVFH F+ + ILRC+ SKL+++ KV+
Sbjct: 60 DIYCTSDMNSFVDCPGYFGHLELAKPVFHESFMNLVLLILRCIDHSTSKLILNSKSQKVK 119
Query: 123 DVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGC--GR 180
++ LK + ++R + + LC N + + N D E+ + Q K G C +
Sbjct: 120 NI-LKVRN-PKQRLSILSKLCSSLNSSKTEKNVS-NDDFFEENLTFQPKYSRDGWCIIAK 176
Query: 181 YQPNIRRSGLD-LTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQ------PNI 233
+ I ++AE H + + + L K + LN K P I
Sbjct: 177 FDKFITSEPTRIMSAERIH---EIFKNIVDLDCKKIGLNPKLCRPDWMILTVLPVPPPTI 233
Query: 234 RRSGL-DLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAAT 292
R S + D+T+ + DDLT+KL DII+ N L + S A
Sbjct: 234 RPSVMFDMTSRAE--------------------DDLTYKLGDIIRTNKSLSQLLISCAPA 273
Query: 293 HVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 352
VI E +LQ+H+ + +N +P + +++QKSG+P+K++ RL+GKEGR+RGNLMGKRVD
Sbjct: 274 QVINEQFNLLQYHIGSYMNNKVPNIAKSIQKSGRPIKSLAQRLQGKEGRVRGNLMGKRVD 333
Query: 353 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
FSARTVITPDPN+ +D++G+P SIA N+T+PEIV+ FNM
Sbjct: 334 FSARTVITPDPNILLDEIGIPWSIALNLTYPEIVSEFNM 372
>gi|125657570|gb|ABN48848.1| RNA polymerase II largest subunit [Nonionella labradorica]
Length = 496
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/320 (42%), Positives = 200/320 (62%), Gaps = 11/320 (3%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA+P +HVGF+ T+++LRCVC++CS+LL + + L+ + R
Sbjct: 1 ECPGHFGHIELARPCYHVGFLPITLRVLRCVCYHCSRLLCADPNSDAFKAALRIE-IPRE 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRR-SGLDLT 193
R I LC+ K C GD++D +DG + + +++ + GCG QP R+ +G+ +
Sbjct: 60 RLIEILHLCEKKKFCGSGDKID--EDGED-----KEQEKVYSGCGNMQPKYRKGTGVKIE 112
Query: 194 AEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDS 251
E+ + +++K L+ V + K+ C + + S D L + V+ +
Sbjct: 113 IEFPERDGGGEDRKQYLSALRVHEIFKRISEKDCRVLGFDTKYSPPDWLLIQVLPVSPPA 172
Query: 252 QEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
+ + G DDLTHK+ DI+K NN L R E+ G HV+ E +++LQFHV T+ D
Sbjct: 173 VRPFVLMDGMRPSQDDLTHKIYDIMKTNNALKRQEARGVPEHVLEELVELLQFHVTTMID 232
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
N++ G P+A QKSGKP+K+++ RL GK GR+RGNLMGKR DFSARTVI DPNL ID+VG
Sbjct: 233 NEVTGQPQAKQKSGKPIKSLRERLVGKAGRVRGNLMGKRCDFSARTVIGGDPNLSIDEVG 292
Query: 372 VPRSIAQNMTFPEIVTPFNM 391
VPRSIA N+T+PE VT FN+
Sbjct: 293 VPRSIALNLTYPERVTKFNL 312
>gi|113707380|gb|ABI36589.1| RNA polymerase II largest subunit [Flavoparmelia caperata]
Length = 1008
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 144/326 (44%), Positives = 190/326 (58%), Gaps = 31/326 (9%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I+LA VGF+TK K+L VC C K+LV S+P D + + ++R ++ L
Sbjct: 1 IELAVACLLVGFMTKIKKLLETVCHNCGKILVDESNPAFADAI--RRRDPKKRFDMVWRL 58
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK----- 197
CK K ICE M +++D D + K HGGCG QP +RR GL LT WK
Sbjct: 59 CKPKMICE--TTMALDEDAPSDKT--KEPKHDHGGCGNIQPEVRREGLRLTGTWKAQKGD 114
Query: 198 HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQ 252
NE Q +K P+T + L R+ +I+R GL EW +
Sbjct: 115 EENEGQQPEKKPITPQMAL--------NIFRHISTEDIKRMGLSNDYARPEWMIITVLPV 166
Query: 253 EKKIPLTGKGVL-------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFH 305
V DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFH
Sbjct: 167 PPPPVRPSISVDGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFH 226
Query: 306 VATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNL 365
VAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL
Sbjct: 227 VATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNL 286
Query: 366 RIDQVGVPRSIAQNMTFPEIVTPFNM 391
+D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 287 SLDEVGVPRSIARTLTYPETVTPYNI 312
>gi|38091166|emb|CAE46437.1| RNA polymerase II largest subunit [Ammonia beccarii]
Length = 422
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 195/321 (60%), Gaps = 5/321 (1%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA+P +HVGF+ T+++LRCVC+YCSKLL + + L + R
Sbjct: 1 ECPGHFGHIELARPCYHVGFLPITLRVLRCVCYYCSKLLCADPNSDAFKAAL-AEDNPRE 59
Query: 135 RQAFIYDLCKGKNICEGGDEMD-INKDGAEDPNSLQNKKQGHGGCGRYQPNIRR-SGLDL 192
R I LC+ K C G+++D + D A + + + + GCG QP R+ +G+ +
Sbjct: 60 RLMAISHLCEKKKFCGNGNKIDSADGDKAMNDGAENGENAVYSGCGSAQPKYRKGTGVKI 119
Query: 193 TAEWKHVNEDSQEKKIPLTG-KGVLLNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNED 250
E+ N+ +++K L+ + + K+ C N + S L + V+
Sbjct: 120 EIEFADRNDSGEDRKQYLSALRAHEIFKRIKEKDCNVLGFNKQYSPPHCLLIQVLPVSPP 179
Query: 251 SQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
+ + G DDLTHK+ DI+K NN L R E+ G HV+ E +++LQFHV T+
Sbjct: 180 QVRPFVLMDGMRPSQDDLTHKIYDIMKTNNALKRQEARGVPEHVLEELVELLQFHVTTMI 239
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DN++ G P+A QKSGKP+K+++ RL GK GR+RGNLMGKR DFSARTVI DPNL I +V
Sbjct: 240 DNEVSGQPQAKQKSGKPIKSLRERLVGKAGRVRGNLMGKRCDFSARTVIGGDPNLSICEV 299
Query: 371 GVPRSIAQNMTFPEIVTPFNM 391
GVPRSIA N+T+PE VT FN+
Sbjct: 300 GVPRSIALNLTYPERVTKFNL 320
>gi|156083004|ref|XP_001608986.1| DNA-directed RNA polymerase II largest subunit [Babesia bovis T2Bo]
gi|154796236|gb|EDO05418.1| DNA-directed RNA polymerase II largest subunit, putative [Babesia
bovis]
Length = 1746
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 155/404 (38%), Positives = 211/404 (52%), Gaps = 53/404 (13%)
Query: 10 LRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTC 69
L+ V+ ++FG+ P+ I+R+SV E + E G P GGL D R G D C TC
Sbjct: 16 LKKVRGIEFGMFDPEMIKRLSVCE--VTQTELYREGVPHTGGLNDLRMGTTDARHNCLTC 73
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTK 129
++ C GHFGHI LAK ++H +T +K+LRCVCF CS LL P+V+++ +K +
Sbjct: 74 FMDVKYCTGHFGHITLAKEMYHCCLLTSVLKVLRCVCFNCSSLLCDKEDPRVKNL-MKLR 132
Query: 130 GQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHG--GCGRYQPNIRR 187
R L K IC P Q + G GCG QP +
Sbjct: 133 STGTR-------LLKMAEICTSS------------PRCQQAEVSGSKMKGCGYPQPKYTK 173
Query: 188 SGLDLTAEW--KH------VNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGL 238
G L ++ KH V+ED +E K T + + K H N RS
Sbjct: 174 EGTSLMIQFSDKHRQMLEEVDEDCEEIKRSFTAEEAYKVLKNISHDDMRYLGFNPERS-- 231
Query: 239 DLTAEWKHVNEDSQEKKIPLTGKGV----------LLDDLTHKLADIIKCNNELIRNESS 288
W + K +P+ V DDLT KL DI+K NN L ++E
Sbjct: 232 --QPAWMIL------KVLPVPPPAVRPYVAYGSDRSEDDLTLKLLDIVKANNMLRKHEER 283
Query: 289 GAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMG 348
A H+ E ++LQ+H+ TL DN++PG+P A +S KP+K+++ARLKGK GR+RGNLMG
Sbjct: 284 ATAPHIAEEISQLLQYHLTTLFDNELPGMPVASTRSKKPIKSLRARLKGKGGRLRGNLMG 343
Query: 349 KRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
KRVDF ARTVIT DPNL +D +GVP+SIA +TF E VTP N++
Sbjct: 344 KRVDFCARTVITGDPNLPVDVIGVPKSIAMTLTFSETVTPLNLE 387
>gi|21280517|gb|AAM45151.1|AF395110_1 RNA polymerase II largest subunit [Naegleria gruberi]
Length = 1590
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 150/341 (43%), Positives = 193/341 (56%), Gaps = 47/341 (13%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGH+ + PVF+V F+ +K+L+ VC +C KLL S + + K R
Sbjct: 1 ECPGHFGHVRI-HPVFNVLFINTVVKVLQSVCIHCGKLLADKSSLQFK----KASKFVNR 55
Query: 135 RQAF--IYDLC-KGKNICEGGD-EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGL 190
R+ F + DLC K K I E G+ E + N++ DP Q GCG QP I R GL
Sbjct: 56 RKRFKEMIDLCRKDKCIIETGNKENEQNQEANIDPTF-----QPRNGCGGLQPKISRDGL 110
Query: 191 DLTAEWKHVNEDSQEKKIPLTGKGVLLNKK---------QGHGGCGRYQPNIRRSGLDLT 241
+ AE+K + S E K LT + + + + G + N R + LT
Sbjct: 111 KIFAEYK--KDTSAEAKQELTKQELTAERALQIFKRIPAEDLELLGFDKDNARPEWMILT 168
Query: 242 A----------EWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAA 291
H + D E DDLTHKLADIIK N + +NE SG
Sbjct: 169 CLPIPPPQVRPSVHHGSADRSE------------DDLTHKLADIIKANAAIQKNEKSGTP 216
Query: 292 THVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
H + E ++MLQ+H AT +N+ PG+P A KSG+PLK+I+ RLKGKEGR+RGNLMGKRV
Sbjct: 217 LHQMEEMVRMLQYHCATYVNNEYPGVPTATTKSGRPLKSIRQRLKGKEGRVRGNLMGKRV 276
Query: 352 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DFSARTVIT DPN+ IDQVGVPR++A NMT PEIVTPFN +
Sbjct: 277 DFSARTVITADPNIDIDQVGVPRTVASNMTVPEIVTPFNFE 317
>gi|113957551|gb|ABI49122.1| RNA polymerase II largest subunit [Pleopsidium gobiense]
Length = 1017
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 153/376 (40%), Positives = 190/376 (50%), Gaps = 112/376 (29%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSP-SHPKVRDVVLKTKGQSR 133
ECPGHFGHI+LA PVFHVGF+TK K+L VC C K+LV +P D L+ + R
Sbjct: 1 ECPGHFGHIELATPVFHVGFMTKIKKLLETVCHNCGKILVDEHDNPAFADA-LRYRDPKR 59
Query: 134 RRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLT 193
R A I+ LCK K +CE
Sbjct: 60 RFDA-IWRLCKPKLVCETS----------------------------------------- 77
Query: 194 AEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVN 248
EDS P GK K HGGCG QP +RR GL LT WK N
Sbjct: 78 -----TVEDSDYGSKPEKGK-----KISKHGGCGNLQPEVRREGLRLTGTWKAQKGDEEN 127
Query: 249 EDSQEKKIPL-------------------------------------------------- 258
E Q +K P+
Sbjct: 128 ETQQPEKKPITPQMALNIFRHISTEEIKNMGLSNDYARPEWMIITVLPVPPPPVRPSISV 187
Query: 259 --TGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
TG+G+ DDLT+KL DII+ N + R E G+ HV++E +LQFHVAT DND+
Sbjct: 188 DGTGQGMRGEDDLTYKLGDIIRANGNVRRCEQEGSPAHVVSEFEALLQFHVATYMDNDIA 247
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPN+ +D+VGVPRS
Sbjct: 248 GQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNISLDEVGVPRS 307
Query: 376 IAQNMTFPEIVTPFNM 391
IA+ +T+PE VTP+N+
Sbjct: 308 IARTLTYPETVTPYNI 323
>gi|113957504|gb|ABI49116.1| RNA polymerase II largest subunit [Lobariella pallida]
Length = 1002
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 146/322 (45%), Positives = 191/322 (59%), Gaps = 34/322 (10%)
Query: 88 PVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKN 147
PVFHVG +TK K+L VC C K+LV S+P D L+ + RR A I+ LCK K
Sbjct: 1 PVFHVGLMTKIKKLLETVCHNCGKILVDESNPAFAD-ALRFRDPKRRFDA-IWRLCKPKL 58
Query: 148 ICE-GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNE 201
+CE D N D ++P K HGGCG QP +RR G+ L WK NE
Sbjct: 59 VCETAAVTEDDNMDKTKEP------KHDHGGCGNVQPEVRREGMKLNGTWKPQKGDEENE 112
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPN--IRRSGLD---LTAEWKHVN-----EDS 251
Q +K P+T + L R+ N IR+ GL EW +
Sbjct: 113 GQQPEKKPITPQMAL--------NIFRHISNDEIRKMGLSSDYARPEWMIITVLPVPPPP 164
Query: 252 QEKKIPLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G + DDLT+KL DII+ + + E+ G+ HV+A+ ++LQFHVAT
Sbjct: 165 VRPSISVDGGNGMRGEDDLTYKLGDIIRASGNVRTCEAEGSPAHVVADFEQLLQFHVATY 224
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+
Sbjct: 225 MDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDE 284
Query: 370 VGVPRSIAQNMTFPEIVTPFNM 391
VGVPRSIA+ +T+PE VTP+N+
Sbjct: 285 VGVPRSIARTLTYPETVTPYNI 306
>gi|188532141|gb|ACD63082.1| RNA polymerase II largest subunit [Beta vulgaris]
Length = 1012
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 137/323 (42%), Positives = 194/323 (60%), Gaps = 18/323 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP+FH+GF+ + I+RCVCF CSK+L K + + ++R ++ I +
Sbjct: 1 HLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHKFKQALKIRNPKNRLKR--ILE 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
CK K CEGGD +D+ +D S K+ GGCG QP G+ + AE+K +
Sbjct: 59 ACKNKKKCEGGDSLDVQDQDQDDGES---AKKTRGGCGAQQPTFTIEGMKIIAEYKMTKK 115
Query: 202 DSQE---------KKIPLTGKGVL-LNKKQGHGGCGR--YQPNIRRSGLDLTAEWKHVNE 249
S E +K L+ + VL + K+ C + P R + + +
Sbjct: 116 KSDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPKYARPDW-MILQVLPIPP 174
Query: 250 DSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
+ + DDLTH+LA II+ N+ L R E +GA H+I+E ++LQFH+AT
Sbjct: 175 PPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIISEFAQLLQFHIATY 234
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DN++PG PRA Q+SG+P+K+I RLK KEGRIRGNLMGKRVDFSARTVITPDPN+ ID+
Sbjct: 235 FDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDE 294
Query: 370 VGVPRSIAQNMTFPEIVTPFNMD 392
+GVP SIA N+T+PE VTP+N++
Sbjct: 295 LGVPWSIALNLTYPETVTPYNIE 317
>gi|90309090|gb|ABD93699.1| RNA polymerase II largest subunit [Bolbitius vitellinus]
Length = 401
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 148/325 (45%), Positives = 193/325 (59%), Gaps = 27/325 (8%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR----RQA 137
HI+LA+PVFH GF+ K KIL +C C KL + D K + R R A
Sbjct: 1 HIELARPVFHPGFIIKVKKILESICINCGKLKAD-----INDTAFANKIRHIRDPKARMA 55
Query: 138 FIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK 197
++ CKGK IC D D ++G +D + K+GHGGCG QP IR+ GL L ++K
Sbjct: 56 AVWGHCKGKTIC---DPDDPKEEGHDDEDG--QIKKGHGGCGHRQPQIRKEGLKLFVQYK 110
Query: 198 HVNEDSQEKKIPLTGKGVL-------LNKKQGHGG---CGRYQPNIRRSGLDLTAEWKHV 247
D ++K K ++ + KK G G Q R + LT V
Sbjct: 111 PQKGDDDDEKAMQPDKRIITPTEVYNVFKKIGDHDLHLLGLSQEYARPEWMILTV--LPV 168
Query: 248 NEDSQEKKIPLTGKGVLL-DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHV 306
I + G + DDLT+KL DIIK + + R E GA HVI+E ++LQFHV
Sbjct: 169 PPPPVRPSIAVDGGAMRSEDDLTYKLGDIIKASANVRRYEQEGAPAHVISEFEQLLQFHV 228
Query: 307 ATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLR 366
AT DND+ G+P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL
Sbjct: 229 ATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLE 288
Query: 367 IDQVGVPRSIAQNMTFPEIVTPFNM 391
+D+VGVP+SIA N+T+PE VTP+N+
Sbjct: 289 LDEVGVPKSIAMNLTYPERVTPYNI 313
>gi|110669620|gb|ABG81905.1| RNA polymerase II largest subunit [Physcia aipolia]
Length = 1015
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 149/374 (39%), Positives = 185/374 (49%), Gaps = 112/374 (29%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA PVFHVGF+TK K+L VC C K+ V S +D L+ + RR
Sbjct: 1 ECPGHFGHIELATPVFHVGFITKIKKLLETVCHNCGKIKVDESSVAFKDA-LRIRDPKRR 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
I+ LCK K ICE ++A
Sbjct: 60 FDG-IWRLCKPKLICE-----------------------------------------MSA 77
Query: 195 EWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNED---- 250
N+D ++ +P GHGGCG QP +RR GL L WK D
Sbjct: 78 TQDEDNKDPVKEPLP------------GHGGCGNIQPEVRRDGLKLMGTWKPQKGDDEGE 125
Query: 251 -SQEKKIPLTGKGVLL-------------------------------------------- 265
Q +K P+T K L
Sbjct: 126 VQQAEKKPITPKMALAVFQEISAGDIRKLGLSNDYARPEWMIITVLPVPPPPVRPSIKVD 185
Query: 266 --------DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGL 317
DDLT+KL DII+ N + R E+ G H+I E +LQFHVAT ND G
Sbjct: 186 GGDGPTGEDDLTYKLGDIIRANGNVRRGETEGTPAHIIEEFETLLQFHVATYMSNDTAGQ 245
Query: 318 PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 377
P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA
Sbjct: 246 PQALQKSGRPVKAIRARLKGKEGRVRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIA 305
Query: 378 QNMTFPEIVTPFNM 391
+ +T+PE VTP+N+
Sbjct: 306 RTLTYPETVTPYNI 319
>gi|13274162|emb|CAC33859.1| RNA polymerase II largest subunit [Nosema tyriae]
Length = 986
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/321 (44%), Positives = 191/321 (59%), Gaps = 48/321 (14%)
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIY 140
GHI+L+KP+FHVG+++K KIL C+CFYCS+L VS + LK + I+
Sbjct: 1 GHIELSKPMFHVGYISKIKKILECICFYCSRLKVSRKN-------LKADLNA------IW 47
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
+ KGK +CEG + ++G GCG QP I++ GL+L A K
Sbjct: 48 AVSKGKMVCEG-----------------ELTEEGFNGCGNKQPVIKKEGLNLVAFMK--G 88
Query: 201 EDSQEKKIPLTGKGVLLNKKQGHGGCGRYQ-PNIRRSGLDL---TAEWK-----HVNEDS 251
ED+ E K+ L G+ V H + +I G DL T EW V S
Sbjct: 89 EDNSEGKVILNGEKV-------HSIFKKISDEDIEVLGFDLAYSTPEWLILTVLLVPPPS 141
Query: 252 QEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
I + G DDLTHKL+DIIK N L + E GA H+I + ++LQFHVATL D
Sbjct: 142 VRPSIVMEGMLRAEDDLTHKLSDIIKSNTYLKKYEMEGAPGHIIRDYEQLLQFHVATLID 201
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
ND+ G P+A+QKSG+PLK+I ARLKGKEGR+RGNLMGKRVDFSAR+VIT D N+ +++VG
Sbjct: 202 NDISGQPQALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVG 261
Query: 372 VPRSIAQNMTFPEIVTPFNMD 392
VP +A+ TFPE +TPFN++
Sbjct: 262 VPLEVAKIHTFPEKITPFNIE 282
>gi|110669652|gb|ABG81920.1| RNA polymerase II largest subunit, partial [Pleopsidium
chlorophanum]
Length = 1011
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 150/330 (45%), Positives = 195/330 (59%), Gaps = 36/330 (10%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSP-SHPKVRDVVLKTKGQSRRRQAFIYD 141
I+LA PVFHVGF+TK K+L VC C K LV +P D L+ + RR A I+
Sbjct: 3 IELATPVFHVGFMTKIKKLLETVCHNCGKPLVDEHDNPAFADA-LRQRDPKRRFDA-IWR 60
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQG--HGGCGRYQPNIRRSGLDLTAEWK-- 197
LCK K ICE D + + L+ K+ HGGCG QP +RR GL LT WK
Sbjct: 61 LCKPKLICETS-----TVDDGDYGSKLEKGKKTSKHGGCGNLQPEVRREGLRLTGTWKAQ 115
Query: 198 ---HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNE 249
NE+ Q +K +T + L R+ +I++ GL EW +
Sbjct: 116 RGDEENENQQPEKKLITPQMAL--------NIFRHISTEDIKKMGLSNDYARPEWMIITV 167
Query: 250 DSQEK-----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
I + G G + DDLT+KL DII+ N + R E G+ HV++E +
Sbjct: 168 LPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANGNVRRCEQEGSPAHVVSEFEAL 227
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 228 LQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 287
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 288 DPNLSLDEVGVPRSIAKTLTYPETVTPYNI 317
>gi|330038381|ref|XP_003239581.1| DNA-directed RNA polymerase II largest chain [Cryptomonas
paramecium]
gi|327206505|gb|AEA38683.1| DNA-directed RNA polymerase II largest chain [Cryptomonas
paramecium]
Length = 1452
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 145/381 (38%), Positives = 208/381 (54%), Gaps = 26/381 (6%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
+ +QF ILSPDEI++ SV ++ E PK GGLMD R GVI++ C+T +
Sbjct: 7 INSIQFSILSPDEIKKYSVV--NVETDLISEENLPKKGGLMDTRLGVIEQGYYCETDMAS 64
Query: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQS 132
ECPGHFGHI+L KP+FH GF+ + I+RC+ SKL+ + + +V++V +K K
Sbjct: 65 HIECPGHFGHINLQKPIFHEGFIEFVLLIIRCIDHMSSKLIFNQNSQRVKNV-MKIKNPY 123
Query: 133 RRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGC--GRYQPNIRRSGL 190
+R I LC G + N +Q K G C ++ P I
Sbjct: 124 QRLIN-IAKLCVSS---FGYRVFNKNSSDTFRQTVIQPKYYRDGWCIVAKFDPKIT---- 175
Query: 191 DLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNE 249
S+ +I + + K+ C + N + + D + V
Sbjct: 176 ------------SEPTRILSAERIYEIFKRISDQDCNKIGLNPKLARPDWMILTVLPVPP 223
Query: 250 DSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
S I DDLT+KL+DII+CN L S A +I E I +LQ+HV +
Sbjct: 224 PSIRPSIIFDSTSRAEDDLTYKLSDIIRCNKSLSHLIISYAPLQLINEQINLLQYHVGSY 283
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DN P L +++QK+G+P+K+I+ RL+GKEGRIRGNLMGKRVDFSARTVITPDPN+ +++
Sbjct: 284 MDNTTPNLAKSIQKTGRPIKSIRQRLQGKEGRIRGNLMGKRVDFSARTVITPDPNILLEE 343
Query: 370 VGVPRSIAQNMTFPEIVTPFN 390
+G+P ++A N+T+PEIVT FN
Sbjct: 344 IGIPWNVALNLTYPEIVTNFN 364
>gi|120561203|gb|ABM26987.1| RNA polymerase II largest subunit, partial [Taphrina deformans]
Length = 1001
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 142/323 (43%), Positives = 193/323 (59%), Gaps = 28/323 (8%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPVFH+GF+TK K+L C+C+ C KL + + PK + + + + ++
Sbjct: 1 HIELAKPVFHIGFITKVKKMLECICWNCGKLKIDANDPKFAET--QRFRDPKVKMNAVWQ 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNS-LQNKKQGHGGCGRYQPNIRRSGLDLTAEWKH-- 198
L K K ICE D+ +G+ D + + K HGGCG QP IR+ GL L WK
Sbjct: 59 LAKMKMICES----DVKGEGSIDTETGIDMSKSNHGGCGNAQPVIRKEGLKLWGTWKKSK 114
Query: 199 -VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA-----EWKHVNEDSQ 252
V E++ LL + H R+ P++ + L+ +W +
Sbjct: 115 DVEGGEPERR--------LLTPMEVHS-VFRHIPSVDLVRMGLSENYARPDWMIITVLPV 165
Query: 253 EKKI--PLTGKGVL--LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVAT 308
P +G + DDLT+KLADIIK N + + E GA HVI E +LQ+HVAT
Sbjct: 166 PPPTVRPSVEQGGMKSHDDLTYKLADIIKANANVKKGEVEGAPAHVIKEFEDLLQYHVAT 225
Query: 309 LTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
DND+ G P+A+QKSG+ +K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D
Sbjct: 226 YMDNDIAGQPKALQKSGRAIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLD 285
Query: 369 QVGVPRSIAQNMTFPEIVTPFNM 391
+VGVPRSIA+ +T+PE VTPFN+
Sbjct: 286 EVGVPRSIARTLTYPERVTPFNI 308
>gi|38091164|emb|CAE46436.1| RNA polymerase II largest subunit [Haynesina germanica]
Length = 414
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 139/321 (43%), Positives = 199/321 (61%), Gaps = 13/321 (4%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA+P +HVGF++ T+++LRCVC++CS+LL + + LK + R
Sbjct: 1 ECPGHFGHIELARPCYHVGFLSITLRVLRCVCYHCSRLLCADQNSDAFKNALKNE-NPRE 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRR-SGLDLT 193
R I LC+ K C GD++D D ED +++ + GCG QP R+ +G+ +
Sbjct: 60 RLVEIVHLCEKKKYCGSGDKVD---DDGED-----KQEKVNSGCGNMQPKYRKGTGVKIE 111
Query: 194 AEWKHVNEDS-QEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNED 250
E+ + S +++K L+ V + K+ C + + S D L + V+
Sbjct: 112 IEFPERDGGSGEDRKQYLSALRVHEIFKRISEKDCRVLGFDTKYSPPDWLLIQVLPVSPP 171
Query: 251 SQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
+ + + G DDLTHK+ DI+K NN L R E+ G HV+ E +++LQFHV T+
Sbjct: 172 AVRPFVLMDGMRPSQDDLTHKVYDIMKTNNALKRQEARGVPEHVLEELVELLQFHVTTMI 231
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DN++ G P+A Q+SGKP+K ++ RL GK GR+RGNLMGKR DFSARTVI DPNL ID+V
Sbjct: 232 DNEVTGQPQAKQESGKPIKGLRERLVGKAGRVRGNLMGKRCDFSARTVIGGDPNLSIDEV 291
Query: 371 GVPRSIAQNMTFPEIVTPFNM 391
GVPRSIA N+T+PE VT FN+
Sbjct: 292 GVPRSIALNLTYPERVTKFNL 312
>gi|399949936|gb|AFP65592.1| DNA-directed RNA polymerase II largest chain [Chroomonas
mesostigmatica CCMP1168]
Length = 1473
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 151/391 (38%), Positives = 218/391 (55%), Gaps = 40/391 (10%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
+ +QF ILSP+EIR SV + F T + PK+GGLMDPR G +D++ C T
Sbjct: 11 IDYIQFSILSPEEIRIYSVAKIENDF--TYQNSIPKMGGLMDPRLGAVDQNICCTTDMNE 68
Query: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQS 132
ECPG+FGH++LAKPVFH F+ + ILRCV S+L+ + PKV+++ LK +
Sbjct: 69 FIECPGYFGHLELAKPVFHESFMDFVLMILRCVDHVTSRLIFNCDSPKVKNI-LKIRN-P 126
Query: 133 RRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPN-SLQNKKQGHGGC--GRYQPNIRRSG 189
R+R + + L G E + + D + N + Q K G C ++ +I
Sbjct: 127 RQRLSMLSKL--GSTSTGLKSEKNTSSDDFFEENITYQPKYSRDGWCIIAKFNQSITSEP 184
Query: 190 LD-LTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQ------PNIRRSGL-DLT 241
L AE H + EK L K + LN P IR S + D+T
Sbjct: 185 TRILGAERIH---EIFEKISDLDSKKIGLNPSVSKPDWMILTVLPIPPPTIRPSVMFDMT 241
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
+ + DDLT+KL DI++ N L + + A +I E++ +
Sbjct: 242 SRAE--------------------DDLTYKLGDIVRTNKSLFQLTIACAPVQIINEHLNL 281
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+H+ + +N +P +P+++QKSG+P+K++ RL+GKEGR+RGNLMGKRVDFSARTVITP
Sbjct: 282 LQYHIGSYMNNKVPNIPKSIQKSGRPIKSLAERLQGKEGRVRGNLMGKRVDFSARTVITP 341
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPN+ +D +GVP SIA N+T+PEIVT FN +
Sbjct: 342 DPNIPLDGIGVPWSIALNLTYPEIVTSFNFE 372
>gi|110669627|gb|ABG81908.1| RNA polymerase II largest subunit [Astrothelium cinnamomeum]
Length = 1021
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 139/329 (42%), Positives = 196/329 (59%), Gaps = 18/329 (5%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA PVFHVGF+ K K+L C +C K+L+ ++P + +KT+ + RR
Sbjct: 1 ECPGHFGHIELAVPVFHVGFIGKIKKLLEICCHHCGKILMDETNPAFIEA-MKTRDRKRR 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
I+ LCK K CE + D N D E+P+ GGCG P IR+ GL L
Sbjct: 60 FDK-IWTLCKTKKKCERDPQDDPNAD--ENPDQPLKPSSTRGGCGNVAPGIRKDGLKLLG 116
Query: 195 EWKHVNEDSQEKKIPLTGKGV-----------LLNKKQGHGGCGRYQPNIRRSGLDLTAE 243
WK+ + ++++ + K + + N+ G G + + + LT
Sbjct: 117 TWKYDKSEEEDEERRIEKKYITPHQVLEAFNHISNEDLEKVGLG--SDYAKPTWMILTVL 174
Query: 244 WKHVNEDSQEKKIPLTGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKML 302
+ TG+G+ DDLT+KL+DII+ N + + + G+ +L
Sbjct: 175 PVPPPPVRPSISVDGTGQGMRGEDDLTYKLSDIIRANANVKKCKGEGSPRSHCRRVETLL 234
Query: 303 QFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD 362
Q+HVAT DND+ G P+AMQKSG+P+K+I++RLKGKEGR+RGNLMGKRVDFSARTVIT D
Sbjct: 235 QYHVATYMDNDIAGQPQAMQKSGRPIKSIRSRLKGKEGRLRGNLMGKRVDFSARTVITGD 294
Query: 363 PNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
PNL +DQVGVPR+I + +T+PE VTP+N+
Sbjct: 295 PNLDLDQVGVPRTICKTLTYPETVTPYNI 323
>gi|83320430|gb|ABC02842.1| RNA polymerase II largest subunit, partial [Cladochytrium
replicatum]
Length = 981
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 186/321 (57%), Gaps = 39/321 (12%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+L KP++H G++ K K+L C+CF+C KL ++ +P+ +K + RR ++
Sbjct: 1 HIELVKPIYHAGYLRKIKKVLECICFFCGKLKLNDGNPQF--ARMKRLTDNNRRFQEVWI 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
LCKGK IC+ D + +N HGGCG+ QP+ RR L L A +
Sbjct: 59 LCKGKKICDA------------DTGNDKNNNIEHGGCGQKQPSFRRGPLGLVARYDADPT 106
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKH----------VNEDS 251
D K+ + + + ++ G L+ EW V S
Sbjct: 107 DQVSSKVLALFESISESDQEAMG---------------LSPEWARPEWMIIQVLLVPPLS 151
Query: 252 QEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
+ + G G DDLTHKL DIIK NN L ++E+ G+ H++ + +LQ+HVAT +
Sbjct: 152 VRPSVHMDGMGRSEDDLTHKLMDIIKANNNLRKHEADGSPPHLVTDLESILQYHVATYMN 211
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
N++ G+P A QKSG+P+K+I+ RLKGKEGR+RGNLMGKRVDFSARTVIT DPN+ IDQVG
Sbjct: 212 NELSGVPTATQKSGRPIKSIRDRLKGKEGRLRGNLMGKRVDFSARTVITGDPNISIDQVG 271
Query: 372 VPRSIAQNMTFPEIVTPFNMD 392
VPRSIA+N+TFPE VT N +
Sbjct: 272 VPRSIARNLTFPETVTAANQE 292
>gi|120561172|gb|ABM26981.1| RNA polymerase II largest subunit [Nosema trichoplusiae]
Length = 989
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 143/321 (44%), Positives = 190/321 (59%), Gaps = 48/321 (14%)
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIY 140
GHI+L+KP+FHVG+++K KIL C+CFYCS+L VS + LK + I+
Sbjct: 1 GHIELSKPMFHVGYISKIKKILECICFYCSRLKVSRKN-------LKADLNA------IW 47
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
+ KGK +CEG + ++G GCG QP I++ GL+L A K
Sbjct: 48 AVSKGKMVCEG-----------------ELTEEGFNGCGNKQPVIKKEGLNLVAFMK--G 88
Query: 201 EDSQEKKIPLTGKGVLLNKKQGHGGCGRYQ-PNIRRSGLDLTA---EWK-----HVNEDS 251
ED+ E K+ L G+ V H + +I G DL EW V S
Sbjct: 89 EDNSEGKVILNGEKV-------HSIFKKISDEDIEVLGFDLAYSRPEWLILTVLLVPPPS 141
Query: 252 QEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
I + G DDLTHKL+DIIK N L + E GA H+I + ++LQFHVATL D
Sbjct: 142 VRPSIVMEGMLRAEDDLTHKLSDIIKSNTYLKKYEMEGAPGHIIRDYEQLLQFHVATLID 201
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
ND+ G P+A+QKSG+PLK+I ARLKGKEGR+RGNLMGKRVDFSAR+VIT D N+ +++VG
Sbjct: 202 NDISGQPQALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVG 261
Query: 372 VPRSIAQNMTFPEIVTPFNMD 392
VP +A+ TFPE +TPFN++
Sbjct: 262 VPLEVAKIHTFPEKITPFNIE 282
>gi|120561229|gb|ABM27000.1| RNA polymerase II largest subunit, partial [Blastocladiella
emersonii]
Length = 1005
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 143/322 (44%), Positives = 199/322 (61%), Gaps = 28/322 (8%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PV+H+ F+ + KIL C+CF+CS+LL P+HP + V +T+ ++RR + ++
Sbjct: 1 HIELARPVYHISFLPRVKKILECICFHCSRLLGDPNHPAFKKAV-RTRDRNRRFKE-VHA 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPN------SLQNKKQGHGGCGRYQPNIRRSGLDLTAE 195
CK N+C AEDPN L+++ HG CG+ QP+IR+ L L ++
Sbjct: 59 HCKAINVCP-----------AEDPNKADEMPDLEDRIPLHG-CGKRQPDIRKKNLTLYSQ 106
Query: 196 WK-HVNEDSQ-EKKIPLTGKGVL-LNKKQGHGGC---GRYQPNIRRSGLDLTAEWKHVNE 249
WK + ++D+ E + LT VL + K+ C G R + LT
Sbjct: 107 WKPNASDDAALEGRHDLTPDQVLQILKRIPDEDCEALGLNPEYARPEWMILTVFPVPPPP 166
Query: 250 DSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
+ +G DDLT KL DI+K N + + G+ H + E+ ++LQFH ATL
Sbjct: 167 VRPSIRSDGAARGE--DDLTFKLCDIVKANAAIYQKIRDGSTGHQLKEHEELLQFHCATL 224
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DN++ G+PRA QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL IDQ
Sbjct: 225 VDNEISGMPRAAQKSGRPIKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQ 284
Query: 370 VGVPRSIAQNMTFPEIVTPFNM 391
VGVPRSIA N+T+PE+VT N+
Sbjct: 285 VGVPRSIALNLTYPEMVTRHNI 306
>gi|77176711|gb|ABA64470.1| DNA-dependent RNA polymerase II largest subunit [Cyanophora
paradoxa]
Length = 1000
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 144/316 (45%), Positives = 192/316 (60%), Gaps = 31/316 (9%)
Query: 92 VGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQA---FIYDLCKGKNI 148
+GF+ +K+LRCVCF CSK+L + DV K + +R +A + D+CK K++
Sbjct: 1 IGFLNTILKVLRCVCFNCSKILCDKN-----DVRFKAAQRIKRPEAKLRAVMDICKSKSM 55
Query: 149 CEGGDEMDINKDGAEDPNSLQNKKQG---HGGCGRYQPNIRRSGLDLTAEWKHVNEDSQE 205
CEGG+E+D+N + DP + K G GCG QP I + GL LTAE+K +++QE
Sbjct: 56 CEGGEELDMNV--SLDPAAAD--KAGVPKRVGCGNPQPKIMKDGLKLTAEFKKTLDENQE 111
Query: 206 KKIPLTGKGVLLNKKQGHGGCGRYQ-PNIRRSGLD---LTAEWKHVNE-----DSQEKKI 256
K ++L +Q + R + R GLD +W + + I
Sbjct: 112 -------KKIILMPEQVYNIFKRISDEDCRHMGLDPRWARPDWFCITHLPVPPAAVRPGI 164
Query: 257 PLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
+ DDLT KL DI++ N +L +NE + A H I E + LQ+H+AT DN++PG
Sbjct: 165 AMNSVQRAEDDLTSKLMDIVRANAQLRKNEQNAAPAHHINELVTQLQYHIATYMDNELPG 224
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
+P A Q+SG+ LK+I RLKGKEGRIRGNLMGKRVDFSARTVIT DPNL IDQVGVPRSI
Sbjct: 225 IPPAQQRSGRALKSICQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLGIDQVGVPRSI 284
Query: 377 AQNMTFPEIVTPFNMD 392
A N+T PEIVTP+NMD
Sbjct: 285 ALNLTTPEIVTPYNMD 300
>gi|296109331|ref|YP_003616280.1| DNA-directed RNA polymerase subunit A' [methanocaldococcus infernus
ME]
gi|295434145|gb|ADG13316.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus infernus
ME]
Length = 886
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 147/386 (38%), Positives = 214/386 (55%), Gaps = 39/386 (10%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTCAG 71
+K++ FGILSPD IR+MSV + I P+T E G P GGLMDPR GVID RC+TC G
Sbjct: 7 LKEIMFGILSPDYIRKMSVAK--IVTPDTYDEDGYPIEGGLMDPRLGVIDPGLRCKTCGG 64
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQ 131
+ ECPGHFGHI+LAKP+ HVGF KIL+ VC +C ++L+ + K R+++ K +
Sbjct: 65 RIGECPGHFGHIELAKPIIHVGFAKTIYKILKAVCPHCGRILIPEN--KRREILEKMEKL 122
Query: 132 SRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLD 191
R EGG++ + K+ ++ + + CG + I+ +
Sbjct: 123 ER----------------EGGNKWEACKETYQEASKISVCPY----CGEVKWEIK---FE 159
Query: 192 LTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----H 246
+ + + E ++ K P + +L P + R EW
Sbjct: 160 KPSSFYRIEEGAEIKLSPADVREILEKIPDEDCILLGLNPKVARP------EWMVLTVLP 213
Query: 247 VNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHV 306
V + I L DDLTHKL +I++ NN L+ + SGA V+ + +LQ+H+
Sbjct: 214 VPPVTVRPSITLETGERSEDDLTHKLVEIVRTNNRLMEHIESGAPNLVVEDVWSLLQYHI 273
Query: 307 ATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLR 366
T DN++PG+ A +SG+PLK + RLKGKEGR R NL GKRV+FS+RTVI+PDP L
Sbjct: 274 DTYFDNELPGISPAKHRSGRPLKTLAQRLKGKEGRFRYNLAGKRVNFSSRTVISPDPCLS 333
Query: 367 IDQVGVPRSIAQNMTFPEIVTPFNMD 392
I++VGVP +A+ +T PE VT +N++
Sbjct: 334 INEVGVPEVVAKELTVPEKVTKYNIE 359
>gi|83320436|gb|ABC02845.1| RNA polymerase II largest subunit, partial [Entomophthora muscae]
Length = 1007
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 191/322 (59%), Gaps = 22/322 (6%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++L +PVFH GF+ + KIL C+C++C +L + K + + Q R + +++
Sbjct: 1 HLELCRPVFHCGFIIRVKKILECICYFCGRLKADKENVKFSRALHFSNKQKRFKA--VWE 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEW---KH 198
CK K IC+ G E + +DP Q + GCG QP R+ L L A + KH
Sbjct: 59 ACKTKTICDAGKEYQ-DSQNMDDPT--QGAQSSKVGCGHKQPMYRKEALKLYATFKADKH 115
Query: 199 VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----D 250
+ + ++K+ +T + VL K+ ++ GL EW ++
Sbjct: 116 SEDSNSDEKLVITAQFVLQTFKKITDA------DLEIMGLSAQFARPEWMVLSNLPVPPP 169
Query: 251 SQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
I + G G DDLTHKL+DIIK N++L E+ G TH++ E +LQFHV+T
Sbjct: 170 CVRPSIVVPGMGRGEDDLTHKLSDIIKANDQLKTAEAEGEPTHILDEYEFLLQFHVSTFK 229
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DND+ GLP A QKSG+P+K+++ARLKGKEGRIRGNLMGKRVDFSARTVIT DP L I++V
Sbjct: 230 DNDVAGLPAATQKSGRPVKSLRARLKGKEGRIRGNLMGKRVDFSARTVITGDPMLSINEV 289
Query: 371 GVPRSIAQNMTFPEIVTPFNMD 392
GVP SIA+N+TFPE+VT +N +
Sbjct: 290 GVPFSIARNLTFPEMVTSYNFE 311
>gi|113957435|gb|ABI49111.1| RNA polymerase II largest subunit [Crocynia pyxinoides]
Length = 360
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 148/319 (46%), Positives = 189/319 (59%), Gaps = 35/319 (10%)
Query: 92 VGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICE- 150
VGF+TK K+L VC C K+LV S+P D L+ + RR A I+ LCK K +CE
Sbjct: 1 VGFMTKIKKLLETVCHNCGKILVDESNPAFADA-LRYRDPKRRFDA-IWRLCKPKMVCET 58
Query: 151 -GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQ 204
G E D D + P K HGGCG QP IRR GL LT WK NE Q
Sbjct: 59 TGVVEDDAAIDDVKKP------KHDHGGCGNIQPEIRREGLRLTGTWKAPKGDEENEGQQ 112
Query: 205 EKKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLDLTA---EWKHVNEDSQEK----- 254
+K P+T + L R+ +I+R GL EW +
Sbjct: 113 PEKRPITPQMAL--------NVFRHISTDDIKRMGLSTDYARPEWMIITVLPVPPPPVRP 164
Query: 255 KIPLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDN 312
I + G + DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DN
Sbjct: 165 SIAVDGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVGEFEQLLQFHVATYMDN 224
Query: 313 DMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGV 372
D+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGV
Sbjct: 225 DIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGV 284
Query: 373 PRSIAQNMTFPEIVTPFNM 391
PRSIA+ +T+PE VTP+N+
Sbjct: 285 PRSIAKTLTYPETVTPYNI 303
>gi|111154416|gb|ABH07422.1| RNA polymerase II largest subunit [Dibaeis baeomyces]
Length = 366
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/317 (44%), Positives = 192/317 (60%), Gaps = 35/317 (11%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+ + D + S+RR I+ +CK K +CE
Sbjct: 1 FITKIKKLLETVCHNCGKILVDESNAEFADAL--QYRDSKRRFDAIWRICKPKMVCESLQ 58
Query: 154 EMDINK-DGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKK 207
D + D A++P K HGGCG QP +R+ GL LT WK NE Q +K
Sbjct: 59 PTDDDDMDKAKEP------KHDHGGCGNIQPEVRKEGLTLTGTWKAHKGDDENEAQQPEK 112
Query: 208 IPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIP 257
P+T + L R+ +I++ GL EW + I
Sbjct: 113 KPITPQMAL--------NIFRHISVEDIKKLGLSNDYARPEWMIITVLPVPPPPVRPSIS 164
Query: 258 LTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM 314
+ G G + DDLT+KLADI++CN + + E+ G+ HV+ E ++LQ+HVATL DND+
Sbjct: 165 VDGSGQGMRGEDDLTYKLADIVRCNASVKKCEAEGSPAHVVQEFEQLLQYHVATLMDNDI 224
Query: 315 PGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
GLP+AMQKSG+P+K+I++RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPR
Sbjct: 225 AGLPQAMQKSGRPIKSIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPR 284
Query: 375 SIAQNMTFPEIVTPFNM 391
SIA+ +T+PE VTP+N+
Sbjct: 285 SIAKTLTYPETVTPYNI 301
>gi|119514090|gb|ABL75818.1| RNA polymerase II largest subunit [Siphula ceratites]
Length = 353
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/317 (44%), Positives = 192/317 (60%), Gaps = 35/317 (11%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+ + D + S+RR I+ +CK K +CE
Sbjct: 1 FITKIKKLLETVCHNCGKILVDESNSEFADALRYR--DSKRRFDAIWKICKPKMVCESLQ 58
Query: 154 EMDINK-DGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKK 207
D + D A++P K HGGCG QP +R+ GL LT WK NE Q +K
Sbjct: 59 PTDDDDMDKAKEP------KHDHGGCGNIQPEVRKEGLTLTGTWKAQKGDDENEGQQPEK 112
Query: 208 IPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIP 257
P+T + L R+ +I++ GL EW + I
Sbjct: 113 KPITPQMAL--------NIFRHISVEDIKKLGLSNDYARPEWMIITVLPVPPPPVRPSIS 164
Query: 258 LTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM 314
+ G G + DDLT+KLADI++CN + + E+ G+ HV+ E ++LQ+HVATL DND+
Sbjct: 165 VDGSGQGMRGEDDLTYKLADIVRCNASVKKCEAEGSPAHVVQEFEQLLQYHVATLMDNDI 224
Query: 315 PGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
GLP+AMQKSG+P+K+I++RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPR
Sbjct: 225 AGLPQAMQKSGRPIKSIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPR 284
Query: 375 SIAQNMTFPEIVTPFNM 391
SIA+ +T+PE VTP+N+
Sbjct: 285 SIARTLTYPETVTPYNI 301
>gi|312273885|gb|ADQ57312.1| RNA polymerase II largest subunit, partial [Nosema sp. CPP 04-02]
Length = 988
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 142/320 (44%), Positives = 190/320 (59%), Gaps = 48/320 (15%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+L+KP+FHVG+++K KIL C+CFYCS+L VS + LK + I+
Sbjct: 1 HIELSKPMFHVGYISKIKKILECICFYCSRLKVSRKN-------LKNDLNA------IWA 47
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
+ KGK +CEG ++ ++G GCG QP I++ GL+L A K E
Sbjct: 48 VSKGKMVCEG-----------------ESTEEGFTGCGNKQPVIKKEGLNLVAFMK--GE 88
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQ-PNIRRSGLDLTA---EWK-----HVNEDSQ 252
D+ E K+ L G+ V H + +I G DL EW V S
Sbjct: 89 DNTEGKVILNGEKV-------HSIFKKISDEDIEVLGFDLAYSRPEWLILTVLLVPPPSV 141
Query: 253 EKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDN 312
I + G DDLTHKL+DIIK N L + E GA H+I + ++LQFHVATL DN
Sbjct: 142 RPSIVMEGMLRAEDDLTHKLSDIIKSNTYLKKYEMEGAPGHIIRDYEQLLQFHVATLIDN 201
Query: 313 DMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGV 372
D+ G P+A+QKSG+PLK+I ARLKGKEGR+RGNLMGKRVDFSAR+VIT D N+ +++VGV
Sbjct: 202 DISGQPQALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGV 261
Query: 373 PRSIAQNMTFPEIVTPFNMD 392
P +A+ TFPE +TPFN++
Sbjct: 262 PLEVAKIHTFPEKITPFNIE 281
>gi|258563154|ref|XP_002582322.1| DNA-directed RNA polymerase II largest subunit [Uncinocarpus reesii
1704]
gi|237907829|gb|EEP82230.1| DNA-directed RNA polymerase II largest subunit [Uncinocarpus reesii
1704]
Length = 1747
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 155/408 (37%), Positives = 213/408 (52%), Gaps = 82/408 (20%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKAPLR +K++QFG+LSP+EI+RMSV +++PETM+ R P+ GL DPR G IDR+
Sbjct: 9 SKAPLRTIKEIQFGLLSPEEIKRMSVVH--VEYPETMDDARQRPREKGLNDPRLGTIDRN 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RC TC + +CPGHFGHI+L+ PVFH+GF+TK K+L VC C K+ + + K D
Sbjct: 67 WRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTNDQKYLD 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L+ + RR A I+ L K ICE
Sbjct: 127 G-LRFRDPKRRFDA-IWRLSKDVLICEA-------------------------------- 152
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAE 243
D E+ P + + K GHGGCG QP IR+ G+ L
Sbjct: 153 ------------------DPPEEDEPFGKESAKMPK--GHGGCGNAQPQIRKEGISLVGT 192
Query: 244 WK-----HVNEDS---QEKKIPLTGKGVL--LDDLTHKLADIIKCNNELIRNESSGAATH 293
WK + +D+ Q +K +T + L +++ + I+ +N+ R E
Sbjct: 193 WKPNKMRDIMDDTDIQQPEKKQITPQMALNIFRNISEEDVRILGLSNDYARPE-----WM 247
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPR---------AMQKSGKPLKAIKARLKGKEGRIRG 344
+I ++ G R A KS +P+KAI+ RLKGKEGR+R
Sbjct: 248 IITVLPVPPPPVRPSVLVGGSSGGQRGEDHLTYKLAEIKSNRPVKAIRGRLKGKEGRLRQ 307
Query: 345 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
NLMGKRVDFSARTVIT DPNL +D+VGVP SIAQ +T+PE+VTP+N++
Sbjct: 308 NLMGKRVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNIN 355
>gi|45935327|gb|AAS79685.1| RNA polymerase II large subunit [Taxus canadensis]
Length = 1013
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/325 (42%), Positives = 192/325 (59%), Gaps = 21/325 (6%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP++H+GF+ + ILRCVCF CS++L + + LK K R + + D
Sbjct: 1 HLELAKPMYHIGFLKTILSILRCVCFNCSRILADEDDHRFKQA-LKVKNPKHRLKK-VLD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK---- 197
CK K CEGGD + + + KK+ GGCG QP I G+ + AE+K
Sbjct: 59 CCKNKTKCEGGD---VIDEDQGQDGDDEVKKKRQGGCGAQQPKIYIDGMKIIAEYKAPRK 115
Query: 198 ------HVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHV 247
+ + E+K L+ + VL + K+ C N + S D L
Sbjct: 116 KADDPEQLMPEPVERKQQLSAERVLSVLKRITDEECQMLGLNPKYSRPDWMILQVLPVPP 175
Query: 248 NEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVA 307
+ T + DDLTH+LA II+ N L + E +GA H+I+E ++LQFH+A
Sbjct: 176 PPVRPSVMMDTTSRSE--DDLTHQLAMIIRHNETLKKQEKTGAPAHIISEFAQLLQFHIA 233
Query: 308 TLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRI 367
T DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDPN+ I
Sbjct: 234 TYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINI 293
Query: 368 DQVGVPRSIAQNMTFPEIVTPFNMD 392
D++GVP SIA N+T+PE VTP+N++
Sbjct: 294 DELGVPWSIALNLTYPETVTPYNIE 318
>gi|120561201|gb|ABM26986.1| RNA polymerase II largest subunit, partial [Pichia kudriavzevii]
Length = 1647
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/325 (42%), Positives = 190/325 (58%), Gaps = 30/325 (9%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSP-SHPKVRDVVLKTKGQSRRRQAFIY 140
HI+LAKPVFH+GF+ K K+ C+C C K+L+ ++P+ R +K + +R A ++
Sbjct: 1 HIELAKPVFHIGFLAKIKKVCECICMNCGKILLDENTNPQYR-AAIKIRDPKKRFNA-VW 58
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
LCK K +C+ D + D + GGCG QP+IR+ GL L WK N
Sbjct: 59 TLCKTKMVCDVDPPEDSDDDED----DEGIHRHRRGGCGSVQPSIRKDGLKLWGTWKKSN 114
Query: 201 EDSQEKKIP---LTGKGVL-LNKKQGHGGCGRYQPNIRRSGLDLTAEWKH---------- 246
D + + + +T +L + + C R L EW
Sbjct: 115 VDEETENLERRQITASDILNVFRHISPEDCHR---------LGFNEEWARPEWMLLTVLP 165
Query: 247 VNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHV 306
V + T DDLT+KLADI+K N + + E G+ HVI+E +LQ+HV
Sbjct: 166 VPPPPVRPSVAFTDSKRSEDDLTYKLADILKANINVQKFEMDGSPQHVISEFEALLQYHV 225
Query: 307 ATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLR 366
AT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVI+ DPNL
Sbjct: 226 ATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLE 285
Query: 367 IDQVGVPRSIAQNMTFPEIVTPFNM 391
+DQVGVPRSIA+ +T+PEIVTP+N+
Sbjct: 286 LDQVGVPRSIARTLTYPEIVTPYNI 310
>gi|113957514|gb|ABI49120.1| RNA polymerase II largest subunit [Anaptychia palmatula]
Length = 1020
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 150/377 (39%), Positives = 189/377 (50%), Gaps = 112/377 (29%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA PVFHVGF+TK K+L +C C K+ V S+ +D L+ + +R
Sbjct: 1 ECPGHFGHIELAVPVFHVGFITKIKKLLETICHNCGKIKVDESNEHFKDA-LRIRDPKKR 59
Query: 135 RQAFIYDLCKGKNICE---GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLD 191
A I+ + K K ICE DE D KD A+D
Sbjct: 60 FDA-IWRVSKPKGICEMDAPSDESD--KDSAKD--------------------------- 89
Query: 192 LTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----H 246
+ S++ +IP HGGCG QP +RR GL L WK
Sbjct: 90 --------SPKSKQPRIP-------------HGGCGNIQPEVRRDGLKLIGTWKPQKGDD 128
Query: 247 VNEDSQEKK---IPLTGKGVLL-------------------------------------- 265
NE Q +K P + L
Sbjct: 129 ENEGQQPEKKPITPAMALAIFLQMSPEDIKTMGMSNDYARPEWMIITVLPVPPPPVRPSI 188
Query: 266 -----------DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM 314
DDLT+KL DII+ N + R E+ G H+I E +LQFHVAT ND
Sbjct: 189 KVDSGDGPTGEDDLTYKLGDIIRANGNVRRGETEGTPAHIIEEFETLLQFHVATYMSNDT 248
Query: 315 PGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
G P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPR
Sbjct: 249 AGQPQALQKSGRPVKAIRARLKGKEGRVRGNLMGKRVDFSARTVITGDPNLSLDEVGVPR 308
Query: 375 SIAQNMTFPEIVTPFNM 391
SIA+ +T+PE VTP+N+
Sbjct: 309 SIARTLTYPETVTPYNI 325
>gi|38091168|emb|CAE46438.1| RNA polymerase II largest subunit [Gromia oviformis]
Length = 418
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/329 (42%), Positives = 186/329 (56%), Gaps = 25/329 (7%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHIDLA P+FH GF+T T+KILRCVC++C+ +L P + K +D++ K R
Sbjct: 1 ECPGHFGHIDLALPMFHPGFMTVTLKILRCVCYFCANILADPQNSKFQDII-KNVEHPRL 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHG-GCGRYQPNIRRSGLDLT 193
R + LC+ C D D E + G G GCG P R+ + +
Sbjct: 60 RLNALEKLCQSAKSCGATQRDDKAGDSLETSADV-----GQGSGCGSKVPKYRKENIKIF 114
Query: 194 AEWKHVNE--DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPN-IRRSGLD---LTAEW--- 244
AE++ ++ ++ ++K LT + V KQ P+ R GL+ EW
Sbjct: 115 AEFEENSDIGNATDRKTELTAEKVFQIFKQ-------ISPDDCRTLGLNPAHARPEWFLI 167
Query: 245 --KHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKML 302
V I + LDDLTHK DIIK N L + G A H + + ++L
Sbjct: 168 TVLPVGPPPIRPTITMDSASRSLDDLTHKYTDIIKANESLRKQRDRGVAQHALQDYTELL 227
Query: 303 QFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD 362
Q+HVATL DN++PG P A Q+ GKP+K I+ RL GK GR+RGNLMGKRVDFSARTVI D
Sbjct: 228 QYHVATLMDNELPGQPPAQQRGGKPIKNIRQRLVGKAGRVRGNLMGKRVDFSARTVIGGD 287
Query: 363 PNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
PNL I+QVGVP+SIA N+T PE VT N+
Sbjct: 288 PNLSIEQVGVPQSIAMNLTVPERVTTLNL 316
>gi|125657574|gb|ABN48850.1| RNA polymerase II largest subunit [Rossyatella sp. DL-2007]
Length = 427
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 199/327 (60%), Gaps = 12/327 (3%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA+P +HVG++ T+++LRCVCF+CS+LL + + LK + R
Sbjct: 1 ECPGHFGHIELARPCYHVGWLPVTLRVLRCVCFHCSRLLCADQNSDAFKQALKIE-NPRD 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKD---GAEDPNSLQN----KKQGHGGCGRYQPNIRR 187
R I LC+ K C GD +D KD G D + L + ++ GCG QP R+
Sbjct: 60 RLIEILRLCEKKKFCGTGDRID-GKDLAKGTGDGDVLMHNTDPSQRVSSGCGNAQPKYRK 118
Query: 188 -SGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEW 244
+G+ + E+ ++ +++K L+ + V + K+ C N + S L +
Sbjct: 119 GTGVKIEIEFPDRTDNGEDRKQYLSARRVHEILKRITEKDCNVLGFNKQYSPPHCLLIQV 178
Query: 245 KHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQF 304
V+ S + + G DDLTHK+ DI+K NN L R E+ G HV+ E +++LQF
Sbjct: 179 LPVSPPSVRPFVLMDGMRPSQDDLTHKIFDIMKTNNALKRQEARGVPEHVLEELVELLQF 238
Query: 305 HVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
HV T+ DN++ G P+A QKSGKP+K+++ RL GK GR+RGNLMGKR DFSARTVI DPN
Sbjct: 239 HVTTMIDNEVTGQPQAKQKSGKPIKSLRERLVGKAGRVRGNLMGKRCDFSARTVIGGDPN 298
Query: 365 LRIDQVGVPRSIAQNMTFPEIVTPFNM 391
L I +VGVPRSIA N+T+PE VT FN+
Sbjct: 299 LSISEVGVPRSIALNLTYPERVTKFNL 325
>gi|120561166|gb|ABM26978.1| RNA polymerase II largest subunit [Nosema bombycis]
Length = 982
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/321 (44%), Positives = 189/321 (58%), Gaps = 48/321 (14%)
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIY 140
GHI+L+KP+FHVG+++K KIL C+CFYCS+L S + LK + I+
Sbjct: 1 GHIELSKPMFHVGYISKIKKILECICFYCSRLKASRKN-------LKADLNA------IW 47
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
+ KGK +CEG + ++G GCG QP I++ GL+L A K
Sbjct: 48 AVSKGKMVCEG-----------------ELTEEGFNGCGNKQPVIKKEGLNLVAFMK--G 88
Query: 201 EDSQEKKIPLTGKGVLLNKKQGHGGCGRYQ-PNIRRSGLDLTA---EWK-----HVNEDS 251
ED+ E K+ L G+ V H + +I G DL EW V S
Sbjct: 89 EDNSEGKVILNGEKV-------HSIFKKISDEDIEVLGFDLAYSRPEWLILTVLLVPPPS 141
Query: 252 QEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
I + G DDLTHKL+DIIK N L + E GA H+I + ++LQFHVATL D
Sbjct: 142 VRPSIVMEGMLRAEDDLTHKLSDIIKSNTYLKKYEMEGAPGHIIRDYEQLLQFHVATLID 201
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
ND+ G P+A+QKSG+PLK+I ARLKGKEGR+RGNLMGKRVDFSAR+VIT D N+ +++VG
Sbjct: 202 NDISGQPQALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVG 261
Query: 372 VPRSIAQNMTFPEIVTPFNMD 392
VP +A+ TFPE +TPFN++
Sbjct: 262 VPLEVAKIHTFPEKITPFNIE 282
>gi|45935325|gb|AAS79684.1| RNA polymerase II large subunit [Thuja occidentalis]
Length = 1013
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/325 (42%), Positives = 191/325 (58%), Gaps = 21/325 (6%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
H++LAKP++H+GF+ + ILRCVCF CS++L + + LK K R + + D
Sbjct: 1 HLELAKPMYHIGFLKTILSILRCVCFNCSRILADEEDHRFKQA-LKVKNPKHRLRK-VLD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK---- 197
CK K CEGGD + + + KK+ GGCG QP I G+ + AE+K
Sbjct: 59 CCKNKTKCEGGD---VIDEDQGQDGDDEVKKKRQGGCGAQQPKIYIDGMKIMAEYKAPRK 115
Query: 198 ------HVNEDSQEKKIPLTGKGVL-LNKKQGHGGC---GRYQPNIRRSGLDLTAEWKHV 247
+ + E+K L+ + VL + K+ C G R + L
Sbjct: 116 KADDPEQLMPEPVERKQQLSAERVLSVLKRISDEECQLLGLNPKYARPDWMILQVLPVPP 175
Query: 248 NEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVA 307
+ T + DDLTH+LA II+ N L + E +GA H+I+E ++LQFH+A
Sbjct: 176 PPVRPSVMMDTTSRSE--DDLTHQLAMIIRHNENLKKQEKTGAPAHIISEFAQLLQFHIA 233
Query: 308 TLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRI 367
T DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDPN+ I
Sbjct: 234 TYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINI 293
Query: 368 DQVGVPRSIAQNMTFPEIVTPFNMD 392
D++GVP SIA N+T+PE VTP+N++
Sbjct: 294 DELGVPWSIALNLTYPETVTPYNIE 318
>gi|113957476|gb|ABI49117.1| RNA polymerase II largest subunit [Heterodermia vulgaris]
Length = 996
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/310 (45%), Positives = 181/310 (58%), Gaps = 18/310 (5%)
Query: 92 VGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICE- 150
VGF+TK K+L VC C K+ V S P +D L+ + RR + I+ LCK K ICE
Sbjct: 1 VGFITKIKKLLETVCHNCGKIKVDESTPAFKDA-LRVRDPKRRFDS-IWRLCKPKTICEM 58
Query: 151 GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQE 205
+ D NKD ++P + GHGGCG QP +RR GL L WK NE Q
Sbjct: 59 SAPQDDDNKDPIKEPVA------GHGGCGNIQPEVRRDGLKLMGTWKPQKGDDENEGQQP 112
Query: 206 KKIPLTGKGVLLNKKQ----GHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 261
+K P++ K L +Q + G R + +T K+
Sbjct: 113 EKKPISPKMALEVFRQMSTEDNKKLGLSNDYARPEWMIITVLPVPPPPVRPSIKVDGGDG 172
Query: 262 GVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + R E+ G H+I E +LQFHVAT ND G P+A+
Sbjct: 173 PTGEDDLTYKLGDIIRANGNVRRGETEGTPAHIIEEFETLLQFHVATYMSNDTAGQPQAL 232
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T
Sbjct: 233 QKSGRPVKAIRARLKGKEGRVRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLT 292
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 293 YPETVTPYNI 302
>gi|403346305|gb|EJY72545.1| hypothetical protein OXYTRI_06457 [Oxytricha trifallax]
Length = 1886
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 150/399 (37%), Positives = 208/399 (52%), Gaps = 61/399 (15%)
Query: 16 VQFGILSPDEIRRMSVTEGGIKFPETMEGGR-PKLGGLMDPRQGVIDRSSRCQTCAGNMT 74
++F +L DEI + SV IK + P G+ DPR G +DR C TC G+
Sbjct: 21 IEFCLLDQDEILKSSVV--SIKNERIYDVNMIPAFEGVNDPRMGTMDRDRLCFTCKGSQV 78
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
+CPGHFGHI+LAKPV+H G + KIL+C+CF C KLL P D +++ K R
Sbjct: 79 DCPGHFGHIELAKPVYHRGCLEYIKKILKCLCFSCGKLLY-PREKDHVDQIMRIKSPKHR 137
Query: 135 -------RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRR 187
+ +++ C+ +N GGCG QP + +
Sbjct: 138 FMQIMKHHEKYVFRYCESQN----------------------------GGCGMKQPKVLK 169
Query: 188 SGLDLTAEWKHVNE--------DSQEKKIPLTGKGV------LLNKKQGHGGCGRYQPNI 233
L L E+ N+ +S E+K + + V + ++Q G + Q I
Sbjct: 170 KSLALEVEYFSDNQHYMQNLGYNSVEQKAFIWPEEVQRIFSKMTTEEQNLLGIKKPQNMI 229
Query: 234 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATH 293
+ + V + + G DDLT+ I+ NN L R+ GA
Sbjct: 230 IKRLI--------VCPPPVRPSVSMGGPFKCEDDLTYSYQKILVTNNVLARDMDKGANLT 281
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
+ + + LQF+VA L DN+ PG+P KSGKPLKAI+ARL+GKEGR+RGNLMGKRVDF
Sbjct: 282 TLNKLREQLQFYVAVLMDNECPGIPTHKHKSGKPLKAIRARLRGKEGRVRGNLMGKRVDF 341
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
SAR+VITPDPNL +DQ+GVP +IAQN+T PE+VTP N+D
Sbjct: 342 SARSVITPDPNLELDQLGVPMAIAQNVTIPEVVTPQNID 380
>gi|119514066|gb|ABL75806.1| RNA polymerase II largest subunit [Tephromela atra]
Length = 989
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/315 (45%), Positives = 187/315 (59%), Gaps = 31/315 (9%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+P D L+ + RR A ++ LCK K ICE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESNPAFADA-LRYRDPKRRFDA-VWRLCKPKMICE--T 56
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
M ++ D P L+ K HGGCG QP IRR GL L WK NE Q +K
Sbjct: 57 TMALDDDAP--PEKLKEPKHDHGGCGNIQPEIRREGLRLNGTWKAQKGDEENEGQQPEKK 114
Query: 209 PLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPL 258
P+T + L R+ +I+R GL EW + I +
Sbjct: 115 PITPQMAL--------SIFRHISTDDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISV 166
Query: 259 TGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
G + DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+ G
Sbjct: 167 DGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAG 226
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 227 QPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 286
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP+N+
Sbjct: 287 ARTLTYPETVTPYNI 301
>gi|83320466|gb|ABC02860.1| RNA polymerase II largest subunit, partial [Synchytrium
macrosporum]
Length = 808
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 191/328 (58%), Gaps = 28/328 (8%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPVFH GF+ K K+L VC C ++ + ++ + + T ++R ++
Sbjct: 1 HIELAKPVFHAGFLVKIKKVLETVCCSCGEIKLDDTNEAFKRALRMT--DRKKRFNAVWK 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQG--HGGCGRYQPNIRRSGLDLTAEWKHV 199
LC K CEG E D A++ + KK+ HGGCG QP R+ GL L +
Sbjct: 59 LCASKKECEGSSEDDDFMADADNNQEGRGKKKNSTHGGCGASQPTFRKKGLSLEMVERQT 118
Query: 200 NEDSQEKKIPLTGKGVLL----------NKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN- 248
+DS+ L GKG ++ + + P+ R EW ++
Sbjct: 119 -KDSEGGD--LAGKGRVIAPGEVKQLFESISDDDAEAMGFSPDYSRP------EWMVISI 169
Query: 249 ----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQF 304
+ + G G DDLTHKL DI+K NN L +NE GA +I E +LQ+
Sbjct: 170 LPVPPMAVRPSVHQEGLGRSEDDLTHKLMDILKANNTLKKNEQDGAPQQIIREFEALLQY 229
Query: 305 HVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
VATL DND+ G+P+++QKS +P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPN
Sbjct: 230 QVATLMDNDLAGVPQSLQKSRRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPN 289
Query: 365 LRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
L IDQVGVPRSIA+NMTFPE VTPFN++
Sbjct: 290 LSIDQVGVPRSIAKNMTFPEKVTPFNIE 317
>gi|15920465|ref|NP_376134.1| DNA-directed RNA polymerase subunit A' [Sulfolobus tokodaii str. 7]
Length = 884
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 153/391 (39%), Positives = 207/391 (52%), Gaps = 44/391 (11%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTC 69
+ +K ++FGILSPDEIR+MSVT I E E G P GG+MDPR GVI+ +C TC
Sbjct: 8 KIIKGIKFGILSPDEIRKMSVT--AIITSEVYDEDGTPIEGGVMDPRLGVIEPGQKCPTC 65
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTK 129
+ CPGHFGHI+L +PV HVGFV ILR C +C +L K K
Sbjct: 66 GNTLNGCPGHFGHIELVRPVIHVGFVKHVYDILRATCRHCGRL--------------KIK 111
Query: 130 GQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSG 189
+ +R + IY K + ++ K N+++N + H CG Q I+
Sbjct: 112 EEDLQRYSRIYHAIKDRWPSAARRLVEYIKK-----NAMKNMECPH--CGEKQFKIK--- 161
Query: 190 LDLTAEWKHVNEDSQEKKIPLTGKGV---LLNKKQGHGGCGRYQPNIRRSGLDLTAEWK- 245
+ + E+ +E I LT + L Y P R EW
Sbjct: 162 ---LEKPYNFYEERKEGVIRLTPSDIRERLERIPDSDYELLGYDPKYSR------PEWMI 212
Query: 246 ----HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + I + DDLTHKL DII+ N L + +GA +I + +
Sbjct: 213 LTVLPVPPITIRPSITIESGIRAEDDLTHKLVDIIRINERLKESIDAGAPQLIIEDLWDL 272
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+HV+T DN++PG+P A +SG+PL+ + RLKGKEGR RGNL GKRVDFSARTVI+P
Sbjct: 273 LQYHVSTYFDNEIPGIPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISP 332
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPN+ ID+VGVP +IA+ +T PE VT N++
Sbjct: 333 DPNISIDEVGVPVAIAKTLTVPERVTKMNIE 363
>gi|119514041|gb|ABL75793.1| RNA polymerase II largest subunit [Bryoria trichodes]
Length = 358
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/315 (44%), Positives = 184/315 (58%), Gaps = 31/315 (9%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+P D + + ++R ++ LCK K ICE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESNPAFADAIRRR--DPKKRXDSVWRLCKPKMICE--T 56
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
M ++ D P + K HGGCG QP +RR GL LT WK NE Q +K
Sbjct: 57 TMALDDDAP--PEKTKEPKHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPEKK 114
Query: 209 PLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGKGV 263
P+T + L R+ +IRR GL EW + V
Sbjct: 115 PITPQMAL--------NIFRHISTDDIRRMGLSNDYARPEWMIITVLPVPPPPVRPSISV 166
Query: 264 L-------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
DDLT+KL DII+ N + R E+ G+ HV++E ++LQFHVAT DND+ G
Sbjct: 167 DGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVSEFEQLLQFHVATYMDNDIAG 226
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 227 QPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 286
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP+N+
Sbjct: 287 ARTLTYPETVTPYNI 301
>gi|83320454|gb|ABC02854.1| RNA polymerase II largest subunit, partial [Spiromyces aspiralis]
Length = 1022
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 139/336 (41%), Positives = 193/336 (57%), Gaps = 33/336 (9%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PV+H GF T+ ++L CVC+YCSKL S P+ V+ + + R I++
Sbjct: 1 HIELARPVYHAGFSTRVKRVLECVCWYCSKLKADESDPEF--VLAQAQKNPNLRSQMIWN 58
Query: 142 LCKGKNIC-----EGGDEMDINKDGAEDPNSL----------QNKKQGHGGCGRYQPNIR 186
LCK + +C E + G DP+ +NKK+ HGGCG QP
Sbjct: 59 LCKSRTVCGVSNAEAEENAMKKAFGDSDPDRRTQNAVREMMGENKKRSHGGCGHRQPQFY 118
Query: 187 RSGLDLTAEWKHVNEDSQEK--KIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LT 241
+S L L A++K + + LT VL K+ + GLD
Sbjct: 119 KSELKLKADFKRATGEEGGAGGRQTLTVTQVLQVLKRIS------DEDAYAMGLDPQYAR 172
Query: 242 AEWK-----HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
EW V + I + DDLT+KL DI+K N + E GA H+I
Sbjct: 173 PEWMIMTVMPVPPMAVRPSIQMDAVRQSEDDLTYKLNDILKANARVRSCEVDGAPMHIIE 232
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
+ +LQFHV T +N++ GLP+A+QKSG+P+++I+ARLKGKEGR+RGNLMGKRVDFSAR
Sbjct: 233 DFESLLQFHVVTFMNNEISGLPQALQKSGRPIRSIRARLKGKEGRLRGNLMGKRVDFSAR 292
Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TVIT DPN+ ID+VGVPRSIA+N+T+PE+VTP+N++
Sbjct: 293 TVITGDPNISIDEVGVPRSIARNLTYPEVVTPYNIE 328
>gi|113957418|gb|ABI49110.1| RNA polymerase II largest subunit [Letrouitia domingensis]
Length = 998
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 138/317 (43%), Positives = 186/317 (58%), Gaps = 32/317 (10%)
Query: 92 VGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEG 151
+GF+ K KIL VC C K+LV S+P D + +RR ++ LCK K +CE
Sbjct: 1 IGFLGKIKKILETVCHNCGKILVDESNPAFVDA--QRIRDPKRRFDAVWRLCKPKTLCET 58
Query: 152 GDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEK 206
D ++P L+ + HGGCG QP +RR L LT WK NE+ +
Sbjct: 59 SMPAD-----GDNPEKLKEPRHDHGGCGNIQPEVRREALKLTGTWKARKGDDENEEQPAE 113
Query: 207 KIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----KI 256
K P+T + L R+ +I++ GL EW + I
Sbjct: 114 KKPITPQMAL--------NVFRHISTQDIKKMGLSNDYARPEWMIITVLPVPPPPVRPSI 165
Query: 257 PLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM 314
+ G + DDLT+KL DII+ N + R E+ GA H+++E +LQFHVAT DND+
Sbjct: 166 SVDGANGMRGEDDLTYKLGDIIRANGNVRRCENDGAPAHIVSEFENLLQFHVATYMDNDI 225
Query: 315 PGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
GLP+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPR
Sbjct: 226 AGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPR 285
Query: 375 SIAQNMTFPEIVTPFNM 391
SIA+ +T+PE VTP+N+
Sbjct: 286 SIARTLTYPETVTPYNI 302
>gi|342306129|dbj|BAK54218.1| DNA-directed RNA polymerase subunit A' [Sulfolobus tokodaii str. 7]
Length = 880
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 153/391 (39%), Positives = 207/391 (52%), Gaps = 44/391 (11%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTC 69
+ +K ++FGILSPDEIR+MSVT I E E G P GG+MDPR GVI+ +C TC
Sbjct: 4 KIIKGIKFGILSPDEIRKMSVT--AIITSEVYDEDGTPIEGGVMDPRLGVIEPGQKCPTC 61
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTK 129
+ CPGHFGHI+L +PV HVGFV ILR C +C +L K K
Sbjct: 62 GNTLNGCPGHFGHIELVRPVIHVGFVKHVYDILRATCRHCGRL--------------KIK 107
Query: 130 GQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSG 189
+ +R + IY K + ++ K N+++N + H CG Q I+
Sbjct: 108 EEDLQRYSRIYHAIKDRWPSAARRLVEYIKK-----NAMKNMECPH--CGEKQFKIK--- 157
Query: 190 LDLTAEWKHVNEDSQEKKIPLTGKGV---LLNKKQGHGGCGRYQPNIRRSGLDLTAEWK- 245
+ + E+ +E I LT + L Y P R EW
Sbjct: 158 ---LEKPYNFYEERKEGVIRLTPSDIRERLERIPDSDYELLGYDPKYSR------PEWMI 208
Query: 246 ----HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + I + DDLTHKL DII+ N L + +GA +I + +
Sbjct: 209 LTVLPVPPITIRPSITIESGIRAEDDLTHKLVDIIRINERLKESIDAGAPQLIIEDLWDL 268
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+HV+T DN++PG+P A +SG+PL+ + RLKGKEGR RGNL GKRVDFSARTVI+P
Sbjct: 269 LQYHVSTYFDNEIPGIPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISP 328
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPN+ ID+VGVP +IA+ +T PE VT N++
Sbjct: 329 DPNISIDEVGVPVAIAKTLTVPERVTKMNIE 359
>gi|206601359|gb|ACI16398.1| RNA polymerase II largest subunit [Polyblastia bryophila]
Length = 391
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 186/327 (56%), Gaps = 20/327 (6%)
Query: 76 CPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR- 134
CPGHFG I LA PV+H GF+ K K+L VC C K+ S D+ + R+
Sbjct: 1 CPGHFGTIKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVES----EDLRYAVSNRDRKK 56
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLT 193
R I+ L + +N+C+ D +DPN+ + K HGGCG QP IR++GL+L
Sbjct: 57 RFELIWRLSQKQNVCQADSPED-----EDDPNAKEKGGKIRHGGCGNAQPVIRKTGLELW 111
Query: 194 AEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEW-----KHV 247
A++K + D +E+ +P + Q + LD EW V
Sbjct: 112 AQYKPLKSDDEEESVPEKSQIWPAQALQVFQHLTDETLDTLGMNLDFARPEWMILRSLPV 171
Query: 248 NEDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQF 304
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+
Sbjct: 172 PPPPVRPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAXELQALLQY 231
Query: 305 HVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
HVAT DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPN
Sbjct: 232 HVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPN 291
Query: 365 LRIDQVGVPRSIAQNMTFPEIVTPFNM 391
L +D+VGVPRSIA+ +T+PE VTPFN+
Sbjct: 292 LSLDEVGVPRSIARTLTYPETVTPFNI 318
>gi|18977935|ref|NP_579292.1| DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus DSM
3638]
gi|18893705|gb|AAL81687.1| DNA-directed RNA polymerase subunit a' [Pyrococcus furiosus DSM
3638]
Length = 907
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 150/391 (38%), Positives = 209/391 (53%), Gaps = 40/391 (10%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTC 69
+ + ++FGILSP EIR+MS E + P+T + G P GG+MD R GVID RC+TC
Sbjct: 3 KVIGSIEFGILSPQEIRKMSAVE--VTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETC 60
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTK 129
G ECPGHFGHI+LA+PV HVGF +IL C C ++ ++ ++ + + K +
Sbjct: 61 GGRAGECPGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIKLTDE--EIEEYMKKIE 118
Query: 130 GQSRRRQAF------IYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRY 181
RR F I+ K + +C G + I + ++ +QG+ R
Sbjct: 119 LARNRRSEFNEIIKEIHKKAKERMVCPHCGAPQYPIKFEKPTIYWEIRKDEQGNEYRHRL 178
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
P R L E +K +PL G L+ ++ R + LT
Sbjct: 179 MPTEVRDWL----------EKIPDKDLPLLG----LDPEKS-----------RPEWMVLT 213
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + I L DDLTHKL DII+ NN L +N +GA +I + +
Sbjct: 214 V--LPVPPVTARPSITLETGIRAEDDLTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDL 271
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+HV T +N+ PG+P A KSG+PLK + RLKGKEGR RGNL GKRV+FSARTVI+P
Sbjct: 272 LQYHVTTYINNEAPGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISP 331
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DP + I++VGVP +A +T PE VT FN++
Sbjct: 332 DPMISINEVGVPVEVAMELTVPEKVTEFNIE 362
>gi|397652056|ref|YP_006492637.1| DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus COM1]
gi|393189647|gb|AFN04345.1| DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus COM1]
Length = 910
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 150/391 (38%), Positives = 209/391 (53%), Gaps = 40/391 (10%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTC 69
+ + ++FGILSP EIR+MS E + P+T + G P GG+MD R GVID RC+TC
Sbjct: 6 KVIGSIEFGILSPQEIRKMSAVE--VTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETC 63
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTK 129
G ECPGHFGHI+LA+PV HVGF +IL C C ++ ++ ++ + + K +
Sbjct: 64 GGRAGECPGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIKLTDE--EIEEYMKKIE 121
Query: 130 GQSRRRQAF------IYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRY 181
RR F I+ K + +C G + I + ++ +QG+ R
Sbjct: 122 LARNRRSEFNEIIKEIHKKAKERMVCPHCGAPQYPIKFEKPTIYWEIRKDEQGNEYRHRL 181
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
P R L E +K +PL G L+ ++ R + LT
Sbjct: 182 MPTEVRDWL----------EKIPDKDLPLLG----LDPEKS-----------RPEWMVLT 216
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + I L DDLTHKL DII+ NN L +N +GA +I + +
Sbjct: 217 V--LPVPPVTARPSITLETGIRAEDDLTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDL 274
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+HV T +N+ PG+P A KSG+PLK + RLKGKEGR RGNL GKRV+FSARTVI+P
Sbjct: 275 LQYHVTTYINNEAPGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISP 334
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DP + I++VGVP +A +T PE VT FN++
Sbjct: 335 DPMISINEVGVPVEVAMELTVPEKVTEFNIE 365
>gi|83320456|gb|ABC02855.1| RNA polymerase II largest subunit, partial [Boothiomyces
macroporosum]
Length = 999
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 138/321 (42%), Positives = 192/321 (59%), Gaps = 25/321 (7%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+ AKPV+H G++ K K L VC++CSK+ S + + +T + ++ ++
Sbjct: 1 HIEFAKPVYHAGYLKKIKKTLETVCWFCSKIKTDESDFRFKRA--QTFKNNAKKFQEVWS 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
L KGK IC + ++ ++ K HGGCG+ QP R GL L+A +K ++
Sbjct: 59 LSKGKTICAVEENLEGDQGKI---------KHNHGGCGQRQPTFRLKGLTLSASFKASSD 109
Query: 202 DSQEKKIPLT-----GKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDS 251
+ EK T K + + K C + + S + EW V +
Sbjct: 110 EDGEKIEARTIDISASKALEVLIKISDEECLK----MGLSPIWARPEWMILTVLPVPPMA 165
Query: 252 QEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
I + G G DDLTHKL+DIIK N L ++E GA +H+IAE +LQ+HV T +
Sbjct: 166 VRPSISMDGMGRGEDDLTHKLSDIIKANTNLKKHEVDGAPSHIIAELENLLQWHVCTYMN 225
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
N+ G+P+A QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL IDQVG
Sbjct: 226 NETAGIPQASQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVG 285
Query: 372 VPRSIAQNMTFPEIVTPFNMD 392
VPRSIA+N+TFPE VTP+N++
Sbjct: 286 VPRSIARNLTFPETVTPYNLE 306
>gi|38091158|emb|CAE46433.1| RNA polymerase II largest subunit [Allogromia sp. F-DL-2003]
Length = 423
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 137/323 (42%), Positives = 196/323 (60%), Gaps = 9/323 (2%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA P +HVGF++ TIK+L+CVC CS+LLV S P+ + K ++R
Sbjct: 1 ECPGHFGHINLACPCYHVGFLSVTIKLLKCVCHECSRLLVDKSKPQFTKIA-NIKNPTKR 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRR-SGLDLT 193
I +LCKG C GD D +++ ++ + NK GCG +PN R+ G+ +
Sbjct: 60 LMK-IVELCKGTKTCGTGDSTDKDENNIDNDDGDGNKITTSSGCGAEKPNYRKGKGVCIE 118
Query: 194 AEWKH-VNEDS-QEKKIPLTGKGVL-LNKKQGHGGCG--RYQPNIRRSGLDLTAEWKHVN 248
+ + +N+DS + K L+ K V + + C + P + L + V+
Sbjct: 119 VNYPNGLNKDSGDDTKQKLSAKRVHEIFSRISDSDCKILGFNPEYAKPDWLLISTLP-VS 177
Query: 249 EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVAT 308
+ + G DD+THKL DI+K N L R E+ G H++ + I +LQ+HV T
Sbjct: 178 PPCVRPFVLMDGVCASQDDITHKLYDILKTNESLKRQEARGVPHHILEDLIDLLQYHVTT 237
Query: 309 LTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
+ DN++ G P+A QKSGKP+K+++ RL GK GR+RGNLMGKR DFSARTVI DPNL ID
Sbjct: 238 MIDNEVGGQPQAKQKSGKPIKSLRQRLVGKAGRVRGNLMGKRCDFSARTVIGGDPNLSID 297
Query: 369 QVGVPRSIAQNMTFPEIVTPFNM 391
+VGVPRS+A+N+T+PE V +NM
Sbjct: 298 EVGVPRSVAKNLTYPERVXRYNM 320
>gi|120561215|gb|ABM26993.1| RNA polymerase II largest subunit, partial [Furculomyces
boomerangus]
Length = 1024
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 144/363 (39%), Positives = 193/363 (53%), Gaps = 90/363 (24%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+L +PV+H GF+ + KIL CVC++CSKL S P + LK + S +R ++D
Sbjct: 1 HIELTRPVYHPGFIIRVKKILECVCWFCSKLKTDDSEPAFQRA-LKVRN-SNQRLKMVWD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
+CK + CE E + E P +E+ +
Sbjct: 59 ICKSRTTCEASPESE------ERPP--------------------------VSEF----Q 82
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHV--NEDSQEKKIPLT 259
D + + L + +K+GHGGCG QP R+ GL+LTA +K E E K P++
Sbjct: 83 DEEGRNRQLVDGLIGSKRKKGHGGCGNKQPVFRKEGLNLTATFKSTGGEEGVAEGKQPIS 142
Query: 260 GKGVLL--------------------------------------------------DDLT 269
VL DDLT
Sbjct: 143 VTQVLQVLKKISDEDALAMGLNVQFARPEWLIISVMPVPPLAVRPSIQMDATRQSEDDLT 202
Query: 270 HKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLK 329
+KL DIIK N + E GA H+I E K+LQFHVAT +N++ GLP+A+QKSG+P+K
Sbjct: 203 YKLNDIIKANVRVQSCEVEGAPLHIIEEFEKLLQFHVATFMNNEISGLPQALQKSGRPIK 262
Query: 330 AIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPF 389
+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPN+ IDQVGVPRSIA+NMT+PE+VTP+
Sbjct: 263 SIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNIDIDQVGVPRSIARNMTYPEVVTPY 322
Query: 390 NMD 392
N++
Sbjct: 323 NIE 325
>gi|38091160|emb|CAE46434.1| RNA polymerase II largest subunit [Allogromia sp. A-DL-2003]
Length = 423
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 137/323 (42%), Positives = 195/323 (60%), Gaps = 9/323 (2%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA P +HVGF++ TIK+L+CVC CS+LLV + P+ + K ++R
Sbjct: 1 ECPGHFGHINLACPCYHVGFLSVTIKLLKCVCHECSRLLVDRTDPQFAKIA-NIKNPTKR 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRR-SGLDLT 193
I +LCK K C GD D +++ +D + NK GCG QPN R+ G+ +
Sbjct: 60 LMK-IVELCKSKKTCGTGDSTDKDENNIDDEDGDGNKVSTSSGCGAEQPNYRKGKGVCIE 118
Query: 194 AEWKH-VNEDS-QEKKIPLTGKGVL-LNKKQGHGGCG--RYQPNIRRSGLDLTAEWKHVN 248
+ + +N+DS + K L+ K V + + C + P + L + V+
Sbjct: 119 VTFPNGINKDSGDDTKQKLSAKRVEEIFSRISDSDCKILGFNPEYAKPDWLLISTLP-VS 177
Query: 249 EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVAT 308
+ + G DD+THKL DI+K N L R E+ G H++ + I +LQ+HV T
Sbjct: 178 PPCVRPFVLMDGVRASQDDITHKLYDILKTNESLKRQEARGVPHHILEDLIDLLQYHVTT 237
Query: 309 LTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
+ DN++ G P+A QKSGKP+K+++ RL GK GR+RGNLMGKR DFSA TVI DPNL ID
Sbjct: 238 MIDNEVGGQPQAKQKSGKPIKSLRQRLVGKAGRVRGNLMGKRCDFSAGTVIGGDPNLSID 297
Query: 369 QVGVPRSIAQNMTFPEIVTPFNM 391
+VGVPRS+A+N+T+PE T +NM
Sbjct: 298 EVGVPRSVAKNLTYPERATRYNM 320
>gi|237823477|pdb|2WAQ|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823490|pdb|2WB1|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823512|pdb|2WB1|W Chain W, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462788|pdb|2Y0S|A Chain A, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462810|pdb|2Y0S|W Chain W, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260742|pdb|4AYB|A Chain A, Rnap At 3.2ang
gi|400260759|pdb|4B1O|A Chain A, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260785|pdb|4B1P|W Chain W, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814429|gb|ACL36488.1| RNA polymerase subunit 1N [Sulfolobus shibatae B12]
Length = 880
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 143/394 (36%), Positives = 209/394 (53%), Gaps = 54/394 (13%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTCAG 71
+K ++FGILSPDEIR+MSVT I P+ E G P G +MDPR GVI+ +C TC
Sbjct: 6 IKGIKFGILSPDEIRKMSVT--AIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGN 63
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPS----HPKVRDVVLK 127
+ CPGHFGHI+L +PV HVGFV + L+ C C ++ +S + ++ + + K
Sbjct: 64 TLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKK 123
Query: 128 -TKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIR 186
+RR ++ +C E + N + +K+G + P+
Sbjct: 124 RWPSAARRLTEYVKKTAMKAQVCPHCGEKQFKIKLEKPYNFYEERKEG---VAKLTPSDI 180
Query: 187 RSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKH 246
R L+ K+P + +L Y P R EW
Sbjct: 181 RERLE---------------KVPESDVEIL-----------GYDPTTSR------PEWMI 208
Query: 247 VNEDSQEKKIPLTGKGVLL--------DDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
+ + P+T + ++ DDLTHKL DI++ N L + +GA +I +
Sbjct: 209 L---TVLPVPPITIRPSIMIESGIRAEDDLTHKLVDIVRINERLKESIDAGAPQLIIEDL 265
Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
+LQ+HVAT DN++PGLP + +SG+PL+ + RLKGKEGR RGNL GKRVDFS+RTV
Sbjct: 266 WDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTV 325
Query: 359 ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
I+PDPN+ ID+VGVP IA+ +T PE +TP+N++
Sbjct: 326 ISPDPNISIDEVGVPEIIARTLTVPERITPWNIE 359
>gi|294610765|gb|ADF27174.1| RNA polymerase II largest subunit [Sarcinomyces crustaceus]
Length = 362
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 142/315 (45%), Positives = 192/315 (60%), Gaps = 20/315 (6%)
Query: 92 VGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEG 151
VGF+TK KIL VC C K+L+ S+P+ V + + RR +A I+ LCKGK C+
Sbjct: 1 VGFITKIKKILETVCHNCGKILLDESNPQFAQAV-RLRDPKRRFEA-IHKLCKGKQTCDV 58
Query: 152 GD-EMDINKDGAEDP-NSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIP 209
D + N D A +P ++L+ K + HGGCG QP IR+ GL L W + E+KI
Sbjct: 59 DDVPEENNNDFAPNPKDALKKKNKSHGGCGNLQPTIRKDGLKLNGTWTWPKDADTEQKI- 117
Query: 210 LTGKGVLLNKKQGHGGCGRYQP-NIRRSGLDLT---AEWK-----HVNEDSQEKKIPLTG 260
+ ++ + QP ++ R GL+ EW V + + + G
Sbjct: 118 ---EKRIITPQMALNVFRNMQPYDMARMGLNADYARPEWMILTVLPVPPPAVRPSVSVDG 174
Query: 261 KGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGL 317
+ DDLT+KL+DII+ N+ + R E G+ HV+AE +LQFHVAT DND+ G
Sbjct: 175 TNQGMRSEDDLTYKLSDIIRANSNVRRCEQEGSPQHVVAEFETLLQFHVATYMDNDIAGQ 234
Query: 318 PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 377
P+A+QKSG+P+KAI+ARLK KEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRS A
Sbjct: 235 PKALQKSGRPVKAIRARLKSKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSTA 294
Query: 378 QNMTFPEIVTPFNMD 392
+ +TFPE V FN+D
Sbjct: 295 RILTFPETVNAFNID 309
>gi|238620364|ref|YP_002915190.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.4]
gi|238381434|gb|ACR42522.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.4]
Length = 880
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 143/394 (36%), Positives = 209/394 (53%), Gaps = 54/394 (13%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTCAG 71
+K ++FGILSPDEIR+MSVT I P+ E G P G +MDPR GVI+ +C TC
Sbjct: 6 IKGIKFGILSPDEIRKMSVT--AIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGN 63
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPS----HPKVRDVVLK 127
+ CPGHFGHI+L +PV HVGFV + L+ C C ++ +S + ++ + + K
Sbjct: 64 TLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKK 123
Query: 128 -TKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIR 186
+RR ++ +C E + N + +K+G + P+
Sbjct: 124 RWPSAARRLTEYVKKTAMKAQVCPHCGEKQFKIKLEKPYNFYEERKEG---VAKLTPSDI 180
Query: 187 RSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKH 246
R L+ K+P + +L Y P R EW
Sbjct: 181 RERLE---------------KVPESDVEIL-----------GYDPTTSR------PEWMI 208
Query: 247 VNEDSQEKKIPLTGKGVLL--------DDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
+ + P+T + ++ DDLTHKL DI++ N L + +GA +I +
Sbjct: 209 L---TVLPVPPITIRPSIMIESGIRAEDDLTHKLVDIVRINERLKESIDAGAPQLIIEDL 265
Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
+LQ+HVAT DN++PGLP + +SG+PL+ + RLKGKEGR RGNL GKRVDFS+RTV
Sbjct: 266 WDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTV 325
Query: 359 ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
I+PDPN+ ID+VGVP IA+ +T PE +TP+N++
Sbjct: 326 ISPDPNISIDEVGVPEIIARTLTVPERITPWNIE 359
>gi|362412154|gb|AEW12842.1| RPB1 [Smittium orthocladii]
Length = 419
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 144/363 (39%), Positives = 194/363 (53%), Gaps = 91/363 (25%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PV+H GF+ K K+L CVC+YCS L V S+P+ T +R + +++
Sbjct: 1 HIELARPVYHPGFIVKVKKVLECVCWYCSMLKVDESNPEFASAQKVTNPNTRLK--LVWE 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
LC+ + +CE + D + G DP S DL
Sbjct: 59 LCQPRTVCEASEAED--RPGINDPMS-----------------------DL--------- 84
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEW----------------- 244
EK L V + +GHGGCG QP IR+ GL LTA +
Sbjct: 85 ---EKNRQLIDGIVGAKRSKGHGGCGHKQPIIRKEGLKLTANFKHSSGEEGVPEGKQYLS 141
Query: 245 ---------KHVNEDSQEKKI------------------PLTGKGVLL--------DDLT 269
K ++ED+ + PL + + DDLT
Sbjct: 142 VLQVLQVLKKIIDEDAAAMGLSYTFARPEWFIITVMPVPPLAVRPSIQMDATRQSEDDLT 201
Query: 270 HKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLK 329
+KL DIIK N + E GA H+I E +LQFHVAT +N++ GLP+A+QKSG+P+K
Sbjct: 202 YKLNDIIKANIRVQSCEVEGAPLHIIEEFESLLQFHVATFMNNEISGLPQALQKSGRPIK 261
Query: 330 AIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPF 389
+I+ARL+GKEGR+RGNLMGKRVDFSARTVIT DPN+ IDQVGVPRSIA+NMT+PE+VTP+
Sbjct: 262 SIRARLRGKEGRVRGNLMGKRVDFSARTVITGDPNIDIDQVGVPRSIARNMTYPEVVTPY 321
Query: 390 NMD 392
N++
Sbjct: 322 NIE 324
>gi|227828174|ref|YP_002829954.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.14.25]
gi|229585403|ref|YP_002843905.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.27]
gi|385773844|ref|YP_005646411.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
HVE10/4]
gi|385776479|ref|YP_005649047.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
REY15A]
gi|227459970|gb|ACP38656.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.14.25]
gi|228020453|gb|ACP55860.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.27]
gi|323475227|gb|ADX85833.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
REY15A]
gi|323477959|gb|ADX83197.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
HVE10/4]
Length = 880
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 143/394 (36%), Positives = 209/394 (53%), Gaps = 54/394 (13%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTCAG 71
+K ++FGILSPDEIR+MSVT I P+ E G P G +MDPR GVI+ +C TC
Sbjct: 6 IKGIKFGILSPDEIRKMSVT--AIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGN 63
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPS----HPKVRDVVLK 127
+ CPGHFGHI+L +PV HVGFV + L+ C C ++ +S + ++ + + K
Sbjct: 64 TLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKK 123
Query: 128 -TKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIR 186
+RR ++ +C E + N + +K+G + P+
Sbjct: 124 RWPSAARRLTEYVKKTAMKAQVCPHCGEKQFKIKLEKPYNFYEERKEG---VAKLTPSDI 180
Query: 187 RSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKH 246
R L+ K+P + +L Y P R EW
Sbjct: 181 RERLE---------------KVPESDVEIL-----------GYDPTTSR------PEWMI 208
Query: 247 VNEDSQEKKIPLTGKGVLL--------DDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
+ + P+T + ++ DDLTHKL DI++ N L + +GA +I +
Sbjct: 209 L---TVLPVPPITIRPSIMIESGIRAEDDLTHKLVDIVRINERLKESIDAGAPQLIIEDL 265
Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
+LQ+HVAT DN++PGLP + +SG+PL+ + RLKGKEGR RGNL GKRVDFS+RTV
Sbjct: 266 WDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTV 325
Query: 359 ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
I+PDPN+ ID+VGVP IA+ +T PE +TP+N++
Sbjct: 326 ISPDPNISIDEVGVPEIIARTLTVPERITPWNIE 359
>gi|227830881|ref|YP_002832661.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.S.2.15]
gi|229579767|ref|YP_002838166.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.G.57.14]
gi|229581564|ref|YP_002839963.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.N.15.51]
gi|227457329|gb|ACP36016.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.S.2.15]
gi|228010482|gb|ACP46244.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.G.57.14]
gi|228012280|gb|ACP48041.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.N.15.51]
Length = 880
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 143/394 (36%), Positives = 209/394 (53%), Gaps = 54/394 (13%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTCAG 71
+K ++FGILSPDEIR+MSVT I P+ E G P G +MDPR GVI+ +C TC
Sbjct: 6 IKGIKFGILSPDEIRKMSVT--AIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGN 63
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPS----HPKVRDVVLK 127
+ CPGHFGHI+L +PV HVGFV + L+ C C ++ +S + ++ + + K
Sbjct: 64 TLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKK 123
Query: 128 -TKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIR 186
+RR ++ +C E + N + +K+G + P+
Sbjct: 124 RWPSAARRLTEYVKKTAMKAQVCPHCGEKQFKIKLEKPYNFYEERKEG---VAKLTPSDI 180
Query: 187 RSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKH 246
R L+ K+P + +L Y P R EW
Sbjct: 181 RERLE---------------KVPESDVEIL-----------GYDPTTSR------PEWMI 208
Query: 247 VNEDSQEKKIPLTGKGVLL--------DDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
+ + P+T + ++ DDLTHKL DI++ N L + +GA +I +
Sbjct: 209 L---TVLPVPPITIRPSIMIESGIRAEDDLTHKLVDIVRINERLKESIDAGAPQLIIEDL 265
Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
+LQ+HVAT DN++PGLP + +SG+PL+ + RLKGKEGR RGNL GKRVDFS+RTV
Sbjct: 266 WDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTV 325
Query: 359 ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
I+PDPN+ ID+VGVP IA+ +T PE +TP+N++
Sbjct: 326 ISPDPNISIDEVGVPEIIARTLTVPERITPWNIE 359
>gi|123979346|gb|ABM81498.1| RNA polymerase II largest subunit [Nephroma parile]
Length = 979
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 141/313 (45%), Positives = 184/313 (58%), Gaps = 28/313 (8%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV SHP D L+ + RR A I+ LCK K ICE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESHPAFADA-LRFRDPKRRFDA-IWRLCKSKMICEASV 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
D ++P+ + K HGGCG QP +RR GL L WK NE Q +K
Sbjct: 59 APD-----DDNPDRSKEPKHDHGGCGNVQPEVRREGLRLNGTWKPQKGDDENEGQQPEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTG 260
P+T + L ++ I + GL EW + I + G
Sbjct: 114 PITPQMALNIFRRIS------TEEITKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDG 167
Query: 261 KGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
+ DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+ G P
Sbjct: 168 GNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVVEFEQLLQFHVATYMDNDIAGQP 227
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 QALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 287
Query: 379 NMTFPEIVTPFNM 391
+T+PE VTP+N+
Sbjct: 288 TLTYPETVTPYNI 300
>gi|362412177|gb|AEW12849.1| RPB1 [Smittium culicis]
Length = 411
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 144/321 (44%), Positives = 192/321 (59%), Gaps = 27/321 (8%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+ + KIL VC+YCSKL S P ++ + LK +R+ + ++++CK + +CE
Sbjct: 2 GFIIRVKKILESVCWYCSKLKADESEPAIQ-LALKVTNPNRKLK-LVWEICKTRTVCEAS 59
Query: 153 DEMDINKD------GAEDPNS------LQNKKQ-GHGGCGRYQPNIRRSGLDLTAEWKHV 199
E D G E+ N + +K+Q GHGGCG QP IR+ GL L+A +K +
Sbjct: 60 AEADDRPPQAPGTMGEEERNRQLVDGIVNSKRQKGHGGCGHRQPIIRKEGLKLSASFKGI 119
Query: 200 --NEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLDLTAEW-----KHVNEDS 251
E E K L+ VL + KK N+ L EW V +
Sbjct: 120 PGEEGVTEGKQILSVTQVLQVLKKISDEDASALGLNV----LFARPEWLIITVMPVPPLA 175
Query: 252 QEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
I + DDLT+KL DI+K N + E GA H+I E +LQFHVAT +
Sbjct: 176 VRPSIQMDATRQSEDDLTYKLNDILKANARVQSCEVEGAPLHIIEEFEALLQFHVATFMN 235
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
N++ GLP+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPN+ IDQVG
Sbjct: 236 NELSGLPQALQKSGRPIKSIRARLKGKEGRVRGNLMGKRVDFSARTVITGDPNIDIDQVG 295
Query: 372 VPRSIAQNMTFPEIVTPFNMD 392
VPRSIA+NMTFPE+VTP+N+D
Sbjct: 296 VPRSIARNMTFPEVVTPYNID 316
>gi|125657576|gb|ABN48851.1| RNA polymerase II largest subunit [Globigerinella siphonifera]
Length = 460
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 196/322 (60%), Gaps = 7/322 (2%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA+P +HVGF++ T+++LRCVC YCS LL + LK + + R
Sbjct: 1 ECPGHFGHIELARPCYHVGFLSITLRVLRCVCHYCSNLLCYDRNSDAFKTALKIENK-RE 59
Query: 135 RQAFIYDLCKGKNICEGGDEMD--INKDGAEDPNSLQNKKQGHGGCGRYQPNIRR-SGLD 191
R I LC+ K C GD++D + G ++P ++ ++ CG QP R+ +G+
Sbjct: 60 RMIEILHLCEKKKRCGRGDQIDAKLGNSGDQNPEE-EDAERVKFQCGALQPKYRKGAGVK 118
Query: 192 LTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNE 249
+ E+ + +++K L+ + + K+ + + S D L V+
Sbjct: 119 IEVEFPDKDGSGEDRKRDLSAQECYNIFKRISEEDLAVLGFDSQYSPPDWLLIRVLPVSP 178
Query: 250 DSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
+ + + G DDLTHK+ DI+K +N L R E+ G HV+ E +++LQFHV T+
Sbjct: 179 PAVRPFVLMDGMRPSQDDLTHKVYDIMKTHNALKRQEARGVPEHVLEELVELLQFHVTTM 238
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DN++ G P+A QKSGKP+K+++ RL GK GR+RGNLMGKR DFSARTVI DPNL IDQ
Sbjct: 239 MDNEVTGQPQAKQKSGKPIKSLRERLVGKAGRVRGNLMGKRCDFSARTVIGGDPNLSIDQ 298
Query: 370 VGVPRSIAQNMTFPEIVTPFNM 391
VGVPRSIA ++T+PE VT FN+
Sbjct: 299 VGVPRSIALSLTYPERVTKFNL 320
>gi|189030833|gb|ABD97897.2| RNA polymerase II largest subunit [Fistulina antarctica]
Length = 411
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 142/323 (43%), Positives = 193/323 (59%), Gaps = 22/323 (6%)
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIY 140
GHI+LA+PVFH GF+ K KIL CVC C KL + + + + +T+ ++R ++
Sbjct: 1 GHIELARPVFHPGFIIKVKKILECVCHSCGKLKIDLKDAQFVNELNRTR-DPKKRLLLVW 59
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
K + C D EDPN + G GGCG +QP IR+ GL L A+ K
Sbjct: 60 GAAKSRMQCLATSPTD------EDPNDPNPQPLG-GGCGDFQPTIRKEGLKLFAQHKKQP 112
Query: 201 EDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKH----------VNED 250
+D ++ + LL+ + + + + S L L+ E+ V
Sbjct: 113 KDDDDQMRSVQPDKRLLSPSEVYAIFKKISDD-DLSMLGLSEEYARPEWMILTVLPVPPP 171
Query: 251 SQEKKIPLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVAT 308
I + G GV+ DDLT+KL DIIK + + R E GA H+I E ++LQFHVAT
Sbjct: 172 PVRPSIAVDG-GVMRSEDDLTYKLGDIIKASANVRRCEQEGAPGHIITEFEQLLQFHVAT 230
Query: 309 LTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
DND+ G+P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D
Sbjct: 231 YMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELD 290
Query: 369 QVGVPRSIAQNMTFPEIVTPFNM 391
+VGVP+SIA N+TFPE VTP+N+
Sbjct: 291 EVGVPKSIAMNLTFPERVTPYNI 313
>gi|13274099|emb|CAC33856.1| RNA polymerase II largest subunit [Glugea anomala]
Length = 884
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 148/324 (45%), Positives = 185/324 (57%), Gaps = 53/324 (16%)
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTK----GQSRRRQ 136
GH+DL KPVFHVGF+ + K+L VCFYCSKL K DV +TK S++
Sbjct: 1 GHMDLIKPVFHVGFLNRIKKVLETVCFYCSKL-------KCYDVEDETKRNPNYDSKKNL 53
Query: 137 AFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEW 196
F + LCK KN C C QP I+R GL LTA
Sbjct: 54 NFWWTLCKTKNCC--------------------------MHCSSKQPLIKRDGLTLTAFI 87
Query: 197 KHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWK-----HVN 248
K E+S E K+ L G+ VL K+ + + + G D EW +V
Sbjct: 88 K--GEESSEGKVLLNGEKVLSILKR----ISKTESELM--GFDEKYSRPEWMIISVLNVT 139
Query: 249 EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVAT 308
S + L G DDLTHKL+DI+KCN L R E GA H+I + +LQ+HVAT
Sbjct: 140 PMSVRPSVVLEGTLRGEDDLTHKLSDIVKCNKNLERYEKEGAPGHIIRDYENLLQYHVAT 199
Query: 309 LTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
L DN +PGLP+++QKSG+PLK+I ARLKGKEGRIRGNLMGKRVDFSAR+VI+PD NL +D
Sbjct: 200 LMDNTIPGLPQSLQKSGRPLKSISARLKGKEGRIRGNLMGKRVDFSARSVISPDSNLSLD 259
Query: 369 QVGVPRSIAQNMTFPEIVTPFNMD 392
+VGVP IA+ TFPE VT FN++
Sbjct: 260 EVGVPLQIAKIHTFPEKVTSFNLE 283
>gi|123979334|gb|ABM81492.1| RNA polymerase II largest subunit [Platismatia glauca]
Length = 366
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 139/315 (44%), Positives = 184/315 (58%), Gaps = 31/315 (9%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+P D + + ++R ++ LCK K ICE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESNPAFADAIRRR--DPKKRFDLVWRLCKPKMICE--T 56
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
M ++ D D + K HGGCG QP +RR GL LT WK NE Q +K
Sbjct: 57 TMALDDDAPSD--KTKEPKHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPEKK 114
Query: 209 PLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGKGV 263
P+T + L R+ +I+R GL EW + V
Sbjct: 115 PITPQMAL--------NIFRHISTEDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISV 166
Query: 264 L-------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
DDLT+KL DII+ N + R E+ G+ HV++E ++LQFHVAT DND+ G
Sbjct: 167 DGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVSEFEQLLQFHVATYMDNDIAG 226
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 227 QPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 286
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP+N+
Sbjct: 287 ARTLTYPETVTPYNI 301
>gi|3172134|gb|AAC18416.1| RNA polymerase II largest subunit [Bonnemaisonia hamifera]
Length = 1732
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 136/324 (41%), Positives = 186/324 (57%), Gaps = 36/324 (11%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGH++LAKP+F++GF+ ++KILRCVC YCSKLL S + + + TK R
Sbjct: 1 ECPGHFGHVELAKPMFNIGFINISLKILRCVCHYCSKLLCSSASVAILHKI--TKPTDRM 58
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
R A + K +C GGCG QP R G + A
Sbjct: 59 RTAMRFT-SGAKKLC-----------------------TAEGGCGHMQPKYSRDGFRIRA 94
Query: 195 EWKHVNEDSQEKKIPLTG-KGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN----E 249
++ E+S E+K +T K + K+ + C + R S EW +
Sbjct: 95 IFEDTAEESAERKQTITAEKSYAIFKRISNSECEAMGLSWRWS----RPEWLILTLLPVP 150
Query: 250 DSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
Q + + G DDLT+KL DI+K NN L E++GA H I E I ++Q+HVAT
Sbjct: 151 PPQVRPSVMRGGLRNEDDLTNKLGDIVKNNNTLRNLEATGAVAHAIREQIDLVQYHVATY 210
Query: 310 TDNDMPG-LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
+N++PG +P ++ + +K+I R KGKEGR+RGNLMGKRVDFSARTVITPDPNLR+
Sbjct: 211 MNNELPGIMPATVRGGSRAIKSIGQRFKGKEGRVRGNLMGKRVDFSARTVITPDPNLRLH 270
Query: 369 QVGVPRSIAQNMTFPEIVTPFNMD 392
+VGVP SIA+N+T+PEIVT +N+D
Sbjct: 271 EVGVPFSIARNLTYPEIVTSYNID 294
>gi|110612568|gb|ABG78257.1| RNA polymerase II largest subunit, partial [Cantharellus cibarius]
Length = 417
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 140/323 (43%), Positives = 192/323 (59%), Gaps = 17/323 (5%)
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPS-HPKVRDVVLKTKGQSRRRQAFI 139
GHI+LA+PVFH+GF+ K KIL C+C C +L + S H + LK + R A +
Sbjct: 1 GHIELARPVFHIGFLVKIKKILECICVQCGRLKIDSSDHAFIER--LKHIRDVKVRMAKV 58
Query: 140 YDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHV 199
+D CKGK IC+ E +++ DG P K G CG QP+IR+ GL L +K
Sbjct: 59 HDHCKGKMICDAT-EPELDGDGQPLPVLDALTKIG---CGHVQPSIRKEGLKLFMVYKKS 114
Query: 200 -NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVNEDSQEKK 255
+ED Q+ ++ L K + + ++ GL + EW +
Sbjct: 115 KDEDEQDMRLALPDKRPFTALEVYNNLRKISDEHLELMGLSVEYARPEWMILTVLPVPPP 174
Query: 256 IPLTGKGV------LLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
V DDLT KL DI+K N + R E GA HVI+E ++LQFHVAT
Sbjct: 175 PVRPSISVDGGTMRSEDDLTFKLGDILKANANVRRCEQEGAPAHVISEFEQLLQFHVATY 234
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND+ G+P+AMQKSG+P+KAI++RLKGKEGR+RGNLMGKRVDFS+RTVIT DPN+ +D+
Sbjct: 235 MDNDIAGIPQAMQKSGRPVKAIRSRLKGKEGRLRGNLMGKRVDFSSRTVITGDPNIMLDE 294
Query: 370 VGVPRSIAQNMTFPEIVTPFNMD 392
VGVP+S+A +T+PE VTP+N++
Sbjct: 295 VGVPKSVAMTLTYPERVTPYNIE 317
>gi|110669618|gb|ABG81904.1| RNA polymerase II largest subunit [Simonyella variegata]
Length = 1013
Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 139/328 (42%), Positives = 192/328 (58%), Gaps = 18/328 (5%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA PVFH+GF+ KT K+L VC CSK+L+ S+ + L+ + RR
Sbjct: 1 ECPGHFGHIELAAPVFHIGFINKTKKLLETVCHNCSKVLLDESN-QAFAAALRIRDPKRR 59
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
++ LCK + IC + + DP + K HGGCG P IR+ GL +
Sbjct: 60 FDT-VHKLCKSRPICVPDPSPE---EKEADPK--EAMKPTHGGCGNRHPQIRKEGLKIQG 113
Query: 195 EWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVN--- 248
WK + +E++ K ++ + Q +IR+ GL EW +
Sbjct: 114 TWKVPKGEDEEERGATEEKRMITPQMALDIFRNISQEDIRKLGLSNDYARPEWMIITVLP 173
Query: 249 ----EDSQEKKIPLTGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
+ + +G G DDLT+KL DI++ N + R ES G+ HV E +LQ
Sbjct: 174 VPPPQVRPSVVVSNSGAGPRGEDDLTYKLGDIVRANMNVRRCESEGSPQHVKTEFESLLQ 233
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
FHVAT DN++ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DP
Sbjct: 234 FHVATYMDNNIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDP 293
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
NL +D+VGVP +I + +T+ E V P N+
Sbjct: 294 NLSLDEVGVPVTICKTLTYVETVNPRNI 321
>gi|123979330|gb|ABM81490.1| RNA polymerase II largest subunit [Asahinea scholanderi]
Length = 983
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 139/315 (44%), Positives = 183/315 (58%), Gaps = 31/315 (9%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+P D + + ++R ++ LCK K ICE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESNPAFADAIRRR--DPKKRFDLVWRLCKPKMICE--T 56
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
M ++ D D + K HGGCG QP +RR GL LT WK NE Q +K
Sbjct: 57 TMALDDDAPSDKT--KEPKHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPEKK 114
Query: 209 PLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGKGV 263
P+T + L R+ +I+R GL EW + V
Sbjct: 115 PITPQMAL--------NIFRHISTDDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISV 166
Query: 264 L-------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+ G
Sbjct: 167 DGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAG 226
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 227 QPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 286
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP+N+
Sbjct: 287 ARTLTYPETVTPYNI 301
>gi|394998799|gb|AFN44318.1| RNA polymerase II largest subunit, partial [Hypogymnia physodes]
Length = 356
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/315 (44%), Positives = 184/315 (58%), Gaps = 31/315 (9%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+P D + + ++R ++ LCK K ICE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESNPAFADAIRRR--DPKKRFDIVWRLCKPKMICE--T 56
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
M ++ D P+ + K HGGCG QP +RR GL LT WK NE Q +K
Sbjct: 57 TMALDDDAP--PDKTKEPKHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPEKK 114
Query: 209 PLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGKGV 263
P+T + L R+ +I+R GL EW + V
Sbjct: 115 PITPQMAL--------NIFRHISTEDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISV 166
Query: 264 L-------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+ G
Sbjct: 167 DGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAG 226
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 227 QPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 286
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP+N+
Sbjct: 287 ARTLTYPETVTPYNI 301
>gi|284998388|ref|YP_003420156.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.D.8.5]
gi|284446284|gb|ADB87786.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.D.8.5]
Length = 880
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/394 (36%), Positives = 209/394 (53%), Gaps = 54/394 (13%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTCAG 71
+K ++FGILSPDEIR+MSVT I P+ E G P G +MDPR GVI+ +C TC
Sbjct: 6 IKGIKFGILSPDEIRKMSVT--AIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGN 63
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPS----HPKVRDVVLK 127
+ CPGHFGHI+L +PV HVGFV + L+ C C ++ +S + ++ + + K
Sbjct: 64 TLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKK 123
Query: 128 -TKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIR 186
++R ++ +C E + N + +K+G + P+
Sbjct: 124 RWPSAAKRLTEYVKKTAMKAQVCPHCGEKQFKIKLEKPYNFYEERKEG---VAKLTPSDI 180
Query: 187 RSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKH 246
R L+ K+P + +L Y P R EW
Sbjct: 181 RERLE---------------KVPESDVEIL-----------GYDPTTSR------PEWMI 208
Query: 247 VNEDSQEKKIPLTGKGVLL--------DDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
+ + P+T + ++ DDLTHKL DI++ N L + +GA +I +
Sbjct: 209 L---TVLPVPPITIRPSIMIESGIRAEDDLTHKLVDIVRINERLKESIDAGAPQLIIEDL 265
Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
+LQ+HVAT DN++PGLP + +SG+PL+ + RLKGKEGR RGNL GKRVDFS+RTV
Sbjct: 266 WDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTV 325
Query: 359 ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
I+PDPN+ ID+VGVP IA+ +T PE +TP+N++
Sbjct: 326 ISPDPNISIDEVGVPEIIARTLTVPERITPWNIE 359
>gi|119514049|gb|ABL75797.1| RNA polymerase II largest subunit [Tuckermannopsis ciliaris]
Length = 358
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/313 (44%), Positives = 183/313 (58%), Gaps = 27/313 (8%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+P D + + ++R ++ LCK K +CE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESNPAFADALRRR--DPKKRFDLVWRLCKPKMVCE--T 56
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
M ++ D D + K HGGCG QP IRR GL LT WK +E Q +K
Sbjct: 57 TMALDDDAPSD--KAKEPKHDHGGCGNIQPEIRREGLRLTGTWKAQKGDEEDEGQQPEKK 114
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGKGVL- 264
P+T + L + C +I+R GL EW + V
Sbjct: 115 PITPQMAL------NIFCHISADDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISVDG 168
Query: 265 ------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+ G P
Sbjct: 169 GNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQP 228
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 229 QALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 288
Query: 379 NMTFPEIVTPFNM 391
+T+PE VTP+N+
Sbjct: 289 TLTYPETVTPYNI 301
>gi|15897171|ref|NP_341776.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus P2]
gi|284174417|ref|ZP_06388386.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus
98/2]
gi|384433684|ref|YP_005643042.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus
98/2]
gi|17368575|sp|Q980R2.1|RPOA1_SULSO RecName: Full=DNA-directed RNA polymerase subunit A'
gi|167744881|pdb|2PMZ|A Chain A, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744892|pdb|2PMZ|Q Chain Q, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782143|pdb|3HKZ|A Chain A, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782156|pdb|3HKZ|I Chain I, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|13813360|gb|AAK40566.1| DNA-directed RNA polymerase, subunit A' (rpoA1) [Sulfolobus
solfataricus P2]
gi|261601838|gb|ACX91441.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus
98/2]
Length = 880
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 143/394 (36%), Positives = 209/394 (53%), Gaps = 54/394 (13%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTCAG 71
+K ++FGILSPDEIR+MSVT I P+ E G P G +MDPR GVI+ +C TC
Sbjct: 6 IKGIKFGILSPDEIRKMSVT--AIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGN 63
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPS----HPKVRDVVLK 127
+ CPGHFGHI+L +PV HVG V + L+ C C ++ +S + ++ + + K
Sbjct: 64 TLGNCPGHFGHIELVRPVIHVGLVKHIYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKK 123
Query: 128 -TKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIR 186
+RR ++ +C +E + N + +K+G + P+
Sbjct: 124 RWPSAARRLTEYVKKTAMKAQVCPHCNEKQYKIKLEKPYNFYEERKEG---VAKLTPSDI 180
Query: 187 RSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKH 246
R L+ KIP + +L Y P R EW
Sbjct: 181 RERLE---------------KIPDSDVEIL-----------GYDPTTSR------PEWMI 208
Query: 247 VNEDSQEKKIPLTGKGVLL--------DDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
+ + P+T + ++ DDLTHKL DI++ N L + +GA +I +
Sbjct: 209 L---TVLPVPPITIRPSIMIESGIRAEDDLTHKLVDIVRINERLKESIDAGAPQLIIEDL 265
Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
+LQ+HVAT DN++PGLP + +SG+PL+ + RLKGKEGR RGNL GKRVDFS+RTV
Sbjct: 266 WDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTV 325
Query: 359 ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
I+PDPN+ ID+VGVP IA+ +T PE +TP+N++
Sbjct: 326 ISPDPNISIDEVGVPEIIAKTLTVPERITPWNIE 359
>gi|123979332|gb|ABM81491.1| RNA polymerase II largest subunit [Masonhalea richardsonii]
Length = 993
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 138/315 (43%), Positives = 184/315 (58%), Gaps = 31/315 (9%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K++V S+P D + + ++R ++ LCK K ICE
Sbjct: 1 FMTKIKKLLETVCHNCGKIVVDESNPAFADAIRRR--DPKKRFDLVWRLCKPKMICETTM 58
Query: 154 EMDIN--KDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEK 206
+D + D A++P K HGGCG QP +RR GL LT WK NE Q +
Sbjct: 59 ALDDDAPSDKAKEP------KHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPE 112
Query: 207 KIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGKGV 263
K P+T + L + +I+R GL EW + V
Sbjct: 113 KKPITPQMALNIFRHISAD------DIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISV 166
Query: 264 L-------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+ G
Sbjct: 167 DGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAG 226
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 227 QPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 286
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP+N+
Sbjct: 287 ARTLTYPETVTPYNI 301
>gi|119514060|gb|ABL75803.1| RNA polymerase II largest subunit [Niebla cephalota]
Length = 358
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 146/317 (46%), Positives = 188/317 (59%), Gaps = 35/317 (11%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+P D L+ + RR A ++ LCK K ICE
Sbjct: 1 FMTKIKKLLETVCHNCGKVLVDESNPAFVDA-LRFRDAKRRFDA-VWRLCKPKMICES-- 56
Query: 154 EMDINKDGAEDPNSLQNKK--QGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEK 206
N ED S + KK HGGCG QP IRR GL LT WK NE Q +
Sbjct: 57 ----NASTEEDAPSDEPKKPKHDHGGCGNIQPEIRREGLRLTGTWKAQKGDEENEGQQPE 112
Query: 207 KIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----KI 256
K P++ + L R+ +I+R GL EW + I
Sbjct: 113 KKPISPQMAL--------NIFRHIATEDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSI 164
Query: 257 PLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM 314
+ G L DDLT+KL DII+ N + R E+ G+ HV++E ++LQFHVAT DND+
Sbjct: 165 AVDGGHGLRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVSEFEQLLQFHVATYMDNDI 224
Query: 315 PGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPR
Sbjct: 225 AGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPR 284
Query: 375 SIAQNMTFPEIVTPFNM 391
SIA+ +T+PE VTP+N+
Sbjct: 285 SIARTLTYPETVTPYNI 301
>gi|110669654|gb|ABG81921.1| RNA polymerase II largest subunit, partial [Acarospora schleicheri]
Length = 388
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 149/372 (40%), Positives = 185/372 (49%), Gaps = 110/372 (29%)
Query: 78 GHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQA 137
GHFGHI+LA PVFHVGF+TK KIL VC C K+LV H + +RR
Sbjct: 4 GHFGHIELATPVFHVGFMTKIKKILETVCHNCGKILVD-EHDNPAFAETQRHRDPKRRFD 62
Query: 138 FIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK 197
++ LCK K ICE +D + D A
Sbjct: 63 GVWRLCKPKLICETSTVLDNDYDSA----------------------------------- 87
Query: 198 HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQ 252
P GK K HGGCG QP +RR GL LT WK NE Q
Sbjct: 88 -----------PEKGK-----KISKHGGCGNLQPEVRREGLKLTGTWKAQKGDDENEGQQ 131
Query: 253 EKKIPL----------------------------------------------------TG 260
+K P+ TG
Sbjct: 132 PEKKPITPQMVLNIFRHISIEDAKKMGLSNDYARPEWMILTVLPVPPPPVRPSISVDGTG 191
Query: 261 KGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPR 319
+G+ DDLT+KL DII+ N + R E G+ HV++E +LQFHVAT DND+ G P+
Sbjct: 192 QGMRGEDDLTYKLGDIIRANQNVRRCEQEGSPAHVVSEFEALLQFHVATYMDNDIAGQPQ 251
Query: 320 AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 379
A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 252 ALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 311
Query: 380 MTFPEIVTPFNM 391
+T+PE VTP+N+
Sbjct: 312 LTYPETVTPYNI 323
>gi|109289337|gb|ABG29162.1| RNA polymerase II largest subunit, partial [Asterotremella
humicola]
Length = 418
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 149/366 (40%), Positives = 194/366 (53%), Gaps = 100/366 (27%)
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIY 140
GHI+ A+PVFH GF+ K KIL CVC+ C KL V P V +V +TK Q R + I+
Sbjct: 1 GHIEWARPVFHAGFIVKVKKILECVCYSCGKLKVDLRDPTVATLVKRTKPQHRLKA--IW 58
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
L + KNICE P+SL+ G D T E +
Sbjct: 59 ALARPKNICE--------------PDSLEENDDG----------------DATNE----D 84
Query: 201 EDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQE------- 253
E ++E+K NK +GHGGCG QP R+ GL L +K + +E
Sbjct: 85 EFTREQKA---------NKPKGHGGCGHEQPQYRKEGLKLIGVFKPSKDKGEEGAEPERR 135
Query: 254 -----------KKIP--------------------LT-----------------GKGVLL 265
KKIP LT G
Sbjct: 136 NISAAECHNILKKIPDEDLIIMGLNAEYARPDWMILTVLPVPPAAVRPSISVDGGAMRSE 195
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
DDLT+KL +I+K + ++ + E+ G V+ E+ +LQFHVAT DND+ G+P+A+QKSG
Sbjct: 196 DDLTYKLGEILKASGQVRKLEAEGVPPSVVNEHFDLLQFHVATYMDNDIAGIPQALQKSG 255
Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL++DQVGVPRSIA +T+PE
Sbjct: 256 RPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPRSIAMTLTYPER 315
Query: 386 VTPFNM 391
VTP+N+
Sbjct: 316 VTPYNI 321
>gi|119514031|gb|ABL75788.1| RNA polymerase II largest subunit [Lecidella elaeochroma]
Length = 355
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 143/317 (45%), Positives = 186/317 (58%), Gaps = 35/317 (11%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L +C C K+LV S+P D L+ + RR A ++ LCK K ICE
Sbjct: 1 FMTKIKKLLETICHNCGKILVDESNPGFVDA-LRYRDPKRRFDA-VWRLCKPKMICETTA 58
Query: 154 EMD--INKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEK 206
+D + D +++P K HGGCG QP IRR GL LT WK NE Q +
Sbjct: 59 PLDDDVPADKSKEP------KHDHGGCGNIQPEIRREGLRLTGTWKPQKGDEENEGQQPE 112
Query: 207 KIPLTGKGVLLNKKQGHGGCGRYQP--NIRRSGLD---LTAEWKHVNEDSQEKKIPLTGK 261
K P+T + L R+ P +IRR GL EW +
Sbjct: 113 KKPITPQMAL--------SIFRHIPIDDIRRMGLSNDYARPEWMIITVLPVPPPPVRPSI 164
Query: 262 GVL-------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM 314
V DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+
Sbjct: 165 SVDGGQGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDI 224
Query: 315 PGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPR
Sbjct: 225 AGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPR 284
Query: 375 SIAQNMTFPEIVTPFNM 391
IA+ +T+PE VTP+N+
Sbjct: 285 HIARTLTYPETVTPYNI 301
>gi|343482718|gb|AEM45104.1| RNA polymerase II largest subunit [Archaeorhizomyces sp. FG15P2b]
Length = 727
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 152/364 (41%), Positives = 191/364 (52%), Gaps = 109/364 (29%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PVFH+GF K KIL CVCF C KL V S+PK D + +SR +++
Sbjct: 1 HIELARPVFHIGFFDKVKKILECVCFSCGKLKVDQSNPKFVDALRYRDPKSRL--TAVWN 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
+ K K +C EM +D +DP+ K DL +
Sbjct: 59 VAKTKLVC----EMTPPRD--DDPSKDAIK-------------------DLAS------- 86
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNED----SQEKKI- 256
HGGCG QP+IRR GL L WK N+D S EKK+
Sbjct: 87 ---------------------HGGCGNLQPSIRRDGLKLYGSWKKTNKDVEDVSAEKKLI 125
Query: 257 ----PLT--------------------------------------------GKGVLLDDL 268
LT GKG DDL
Sbjct: 126 TPAEVLTVFKHISSEDLAKMGLNEEYAKPEWMIITVLPVPPPPVRPSINNEGKGRGEDDL 185
Query: 269 THKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQK-SGKP 327
THKLADIIK N+ + R E GA H+I+E ++LQFHVAT DND+ G P+A+QK +G+P
Sbjct: 186 THKLADIIKANSNVRRCEQEGAPAHIISEFEQLLQFHVATYMDNDIAGQPQALQKKTGRP 245
Query: 328 LKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVT 387
+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VT
Sbjct: 246 IKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVT 305
Query: 388 PFNM 391
PFN+
Sbjct: 306 PFNI 309
>gi|113957512|gb|ABI49119.1| RNA polymerase II largest subunit [Coccocarpia erythroxyli]
Length = 997
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 144/318 (45%), Positives = 188/318 (59%), Gaps = 36/318 (11%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+TK K+L VC C K+LV S+P D L+ + RR A I+ LCK K ICE
Sbjct: 1 GFMTKIKKLLEIVCHNCGKILVDESNPAFADA-LRYRDPKRRFDA-IWRLCKPKRICETL 58
Query: 153 DEMDINKDGAEDPNSLQNK--KQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDS-----QE 205
+ ED N+ + K + HGGCG QP IRR+GL L WK D Q
Sbjct: 59 RPL-------EDDNAEKQKEPRHDHGGCGNLQPEIRRAGLKLNGTWKAQKGDEEIEGQQP 111
Query: 206 KKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----K 255
+K P+T + L R+ IR+ GL EW +
Sbjct: 112 EKKPITPQMAL--------NVFRHISSDEIRKIGLSNDYARPEWMIITVLPVPPPPVRPS 163
Query: 256 IPLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDND 313
I + G + DDLT+KL DII+ N + R E+ G+ HV++E ++LQFHVAT DND
Sbjct: 164 ISVDGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVSEFEQLLQFHVATYMDND 223
Query: 314 MPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVP 373
+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVP
Sbjct: 224 IAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVP 283
Query: 374 RSIAQNMTFPEIVTPFNM 391
RSIA+ +T+PE VTP+N+
Sbjct: 284 RSIARTLTYPETVTPYNI 301
>gi|110669616|gb|ABG81903.1| RNA polymerase II largest subunit [Acarosporina microspora]
Length = 358
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 142/322 (44%), Positives = 187/322 (58%), Gaps = 44/322 (13%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG- 152
F+TK K+L VC C K+LV S+P + + S+ R I+ LCK K +CE
Sbjct: 1 FMTKIKKLLETVCHNCGKVLVDESNPDFVNALRYR--DSKARFDAIWRLCKPKMVCESSP 58
Query: 153 -----DEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNED 202
DE+D +K+ D HGGCG QP +R+ GL LT WK NE
Sbjct: 59 IGEDEDELDKSKESRHD----------HGGCGNLQPEVRKEGLKLTGTWKAQKGDDENEA 108
Query: 203 SQEKKIPLTGKGVLLNKKQGHGGCGRYQPN--IRRSGLD---LTAEWKHVN-----EDSQ 252
Q +K P+T L R+ N I++ GL EW +
Sbjct: 109 QQPEKKPITPAMAL--------NIFRHISNEDIKKIGLSNDYARPEWMVITVLPVPPPPV 160
Query: 253 EKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G G + DDLT+KL DII+ N + R E+ G+ HV+AE ++LQFHVAT
Sbjct: 161 RPSISMDGTGTGMRSEDDLTYKLGDIIRANGNVRRCETDGSPAHVVAEYEQLLQFHVATY 220
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+
Sbjct: 221 MDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDE 280
Query: 370 VGVPRSIAQNMTFPEIVTPFNM 391
VGVPRSIA+ +T+PE VTP+N+
Sbjct: 281 VGVPRSIARTLTYPETVTPYNI 302
>gi|119514043|gb|ABL75794.1| RNA polymerase II largest subunit [Bryoria trichodes]
Length = 358
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/315 (44%), Positives = 183/315 (58%), Gaps = 31/315 (9%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+P D + + +R ++ LCK K ICE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESNPAFADAIRRR--DPTKRFDSVWRLCKPKMICE--T 56
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
M ++ D P + K HGGCG QP +RR GL LT WK NE Q ++
Sbjct: 57 TMALDDDAP--PEKTKEPKHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPEEK 114
Query: 209 PLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGKGV 263
P+T + L R+ +IRR GL EW + V
Sbjct: 115 PITPQMAL--------NIFRHISTDDIRRMGLSNDYARPEWMIITVLPVPPPPVRPSISV 166
Query: 264 L-------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
DDLT+KL DII+ N + R E+ G+ HV++E ++LQFHVAT DND+ G
Sbjct: 167 DGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVSEFEQLLQFHVATYMDNDIAG 226
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 227 QPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 286
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP+N+
Sbjct: 287 ARTLTYPETVTPYNI 301
>gi|123979356|gb|ABM81503.1| RNA polymerase II largest subunit [Solorina crocea]
Length = 373
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 137/312 (43%), Positives = 189/312 (60%), Gaps = 28/312 (8%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+L+ SH + D + + + RR A I+ LCK K ICE
Sbjct: 1 FMTKIEKLLETVCHNCGKILLDESHAEFADALRRNRDPKRRFDA-IWKLCKPKMICESTP 59
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK--HVNEDSQEKKIPLT 211
D ++P+ + K HGGCG QP+IR+ GL L WK +++ QE+K P+T
Sbjct: 60 SPD-----DDNPDKSKEPKHDHGGCGNIQPDIRKEGLKLFGTWKPQKGDDEGQEEKRPIT 114
Query: 212 GKGVLLNKKQGHGGCGRY--QPNIRRSGLDLTA---EWKHVNEDSQEK-----KIPLTGK 261
+ L R+ I++ GL++ EW + I + G
Sbjct: 115 PQNAL--------NIFRHISTDEIQKMGLNVDYARPEWMIITVLPVPPPPVRPSISVDGG 166
Query: 262 GVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPR 319
+ DDLT+KL DII+ N + E+ G+ HV+AE ++LQFHVAT DND+ G P+
Sbjct: 167 NGMRGEDDLTYKLGDIIRANGNVRTCEAEGSPAHVVAEFEQLLQFHVATYMDNDIAGQPQ 226
Query: 320 AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 379
A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT PNL +D+VGVPRSIA+
Sbjct: 227 ALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGGPNLSLDEVGVPRSIART 286
Query: 380 MTFPEIVTPFNM 391
+T+PE VTP+N+
Sbjct: 287 LTYPETVTPYNI 298
>gi|123979352|gb|ABM81501.1| RNA polymerase II largest subunit [Parmeliella appalachensis]
Length = 366
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 141/313 (45%), Positives = 188/313 (60%), Gaps = 28/313 (8%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+L S+P D L+ + RR A I+ LCK K +CE
Sbjct: 1 FMTKIKKLLETVCHSCGKILHDESNPAFADA-LRYRDPKRRFDA-IWRLCKPKMVCE--- 55
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
+ +++D E+ + + K HGGCG QP +RR GL LT WK NE Q +K
Sbjct: 56 TLSVSED--ENMDKPKEPKHDHGGCGNVQPEVRREGLRLTGTWKVQKGDEENEGQQNEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTG 260
P+T + L H I++ GL EW + I + G
Sbjct: 114 PITPQMAL------HIFRHISTEEIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDG 167
Query: 261 KGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
+ DDLT+KL DII+ N + R E+ G+ HV+AE ++LQFHVAT DND+ G P
Sbjct: 168 GNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVAEFEQLLQFHVATYMDNDIAGQP 227
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 QALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 287
Query: 379 NMTFPEIVTPFNM 391
+T+PE VTP+N+
Sbjct: 288 TLTYPETVTPYNI 300
>gi|119514062|gb|ABL75804.1| RNA polymerase II largest subunit [Squamarina cartilaginea]
Length = 358
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 142/315 (45%), Positives = 188/315 (59%), Gaps = 31/315 (9%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+P +D L+ + RR A ++ LCK K ICE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESNPAFKDA-LRYRDPKRRFDA-VWRLCKPKMICETSL 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
+D D A P + K HGGCG QP IR+ GL LT WK NE Q +K
Sbjct: 59 VLD---DDAP-PEKQKEPKHDHGGCGNVQPEIRKEGLRLTGTWKPQKGDEENEGQQPEKK 114
Query: 209 PLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPL 258
P+T + L R+ +I++ GL EW + I +
Sbjct: 115 PITPQMAL--------NIFRHISTEDIKKIGLSNDYARPEWMIITVLPVPPPPVRPSISV 166
Query: 259 TGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
G + DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+ G
Sbjct: 167 EGASGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAG 226
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRS+
Sbjct: 227 QPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSV 286
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP+N+
Sbjct: 287 ARTLTYPETVTPYNI 301
>gi|206601344|gb|ACI16391.1| RNA polymerase II largest subunit [Polyblastia wheldonii]
Length = 392
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 142/333 (42%), Positives = 188/333 (56%), Gaps = 30/333 (9%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKL-LVSPSHPKVRDVVLKTKGQSR 133
ECPGHFG I LA PV+H GF+ K K+L VC C K+ V + V TK
Sbjct: 1 ECPGHFGVIKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVESEELRYAHTVRNTK---- 56
Query: 134 RRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQG----HGGCGRYQPNIRRSG 189
+R I+ + + +N+C+ D ED + K +G HGGCG QP IR+SG
Sbjct: 57 KRFELIWRMSQKQNVCQA--------DSPEDEDDSMGKDKGAKIKHGGCGNAQPAIRKSG 108
Query: 190 LDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKH 246
L+L A++K D +E+ +P K + + + GL+L EW
Sbjct: 109 LELWAQYKPRKGDDEEEPVP--EKSQIWPAQALQIFQHLTDETLETLGLNLDFARPEWMI 166
Query: 247 VNE-----DSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
+ I + G G DDLT KL DII+ N LIR + GA H+ E
Sbjct: 167 LQSLPVPPPPVRPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKEL 226
Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
+LQ+HVAT DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTV
Sbjct: 227 QALLQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTV 286
Query: 359 ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
IT DPNL +D+VGVP+SIA+N+T+PE VT FN+
Sbjct: 287 ITGDPNLSLDEVGVPKSIARNLTYPETVTRFNI 319
>gi|119514117|gb|ABL75832.1| RNA polymerase II largest subunit [Melanelixia fuliginosa]
Length = 357
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 140/317 (44%), Positives = 184/317 (58%), Gaps = 35/317 (11%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEG-- 151
F+TK K+L VC C K+LV S+P D + + ++R ++ LCK K ICE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESNPAFADAIRRR--DPKKRFDLVWRLCKPKMICETTM 58
Query: 152 GDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEK 206
E D D A++P + HGGCG QP +RR GL LT WK NE Q +
Sbjct: 59 ALEDDAPSDKAKEP------RHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPE 112
Query: 207 KIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGK 261
K P+T + L R+ +I+R GL EW +
Sbjct: 113 KKPITPQMAL--------NIFRHISTEDIKRMGLSNDYARPEWVIITVLPVPPPPVRPSI 164
Query: 262 GVL-------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM 314
V DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+
Sbjct: 165 SVDGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDI 224
Query: 315 PGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPR
Sbjct: 225 AGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPR 284
Query: 375 SIAQNMTFPEIVTPFNM 391
SIA+ +T+PE VTP+N+
Sbjct: 285 SIARTLTYPETVTPYNI 301
>gi|83320416|gb|ABC02835.1| RNA polymerase II largest subunit, partial [Physoderma maydis]
Length = 748
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 148/366 (40%), Positives = 189/366 (51%), Gaps = 106/366 (28%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PVFH+GF+ + KIL CVC++CSKL + +PK + + + RR QA I++
Sbjct: 1 HIELARPVFHIGFLPRVKKILECVCYHCSKLKIDIKNPKFAKAKM-LRHRQRRFQA-IHE 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
LCK + +C D D + + H
Sbjct: 59 LCKDRFVC---------NDENLDEDKMDEDFMSHD------------------------- 84
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDS-----QEKKI 256
L K++ H GCG+ QP RR GL L A WK ++D QE +
Sbjct: 85 ---------------LLKRKAHEGCGQKQPAYRRDGLKLFAVWKSNSKDEDAPAGQEGRQ 129
Query: 257 PLTGKGV-------------LL-------------------------------------D 266
PLT V LL D
Sbjct: 130 PLTAAMVHQILKRISDEDCELLGLNPEFSRPDWLILTVLPVPPPPVRPSINIDGAARSED 189
Query: 267 DLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGK 326
DLT+KLADIIK N L + E GAA HV+AE +LQFHVAT +ND+ G P AMQ+SG+
Sbjct: 190 DLTYKLADIIKANASLRKCEHDGAARHVVAEFEMLLQFHVATYMNNDISGQPAAMQRSGR 249
Query: 327 PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIV 386
P+K+I+ RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL ID+VGVPRSIA N+TFPE+V
Sbjct: 250 PIKSIRDRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDEVGVPRSIAXNLTFPEMV 309
Query: 387 TPFNMD 392
T +N+D
Sbjct: 310 TKYNID 315
>gi|119514102|gb|ABL75824.1| RNA polymerase II largest subunit [Squamarina gypsacea]
Length = 357
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 143/315 (45%), Positives = 187/315 (59%), Gaps = 31/315 (9%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+P RD L+ + RR A ++ LCK K ICE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESNPAFRDA-LRYRDPKRRFDA-VWRLCKPKMICETSL 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
+D D A P + K HGGCG QP IR+ GL LT WK NE Q +K
Sbjct: 59 VLD---DDAP-PEKQKEPKHDHGGCGNVQPEIRKEGLRLTGTWKPQKGDEENEGQQPEKK 114
Query: 209 PLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPL 258
P+T + L R+ +IR+ GL EW + I +
Sbjct: 115 PITPQMAL--------NIFRHISTEDIRKIGLSNDYARPEWMIITVLPVPPPPVRPSISV 166
Query: 259 TGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
G + DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+ G
Sbjct: 167 EGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVTEFEQLLQFHVATYMDNDIAG 226
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P+A+QKSG+ +K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRS+
Sbjct: 227 QPQALQKSGRXVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSV 286
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP+N+
Sbjct: 287 ARTLTYPETVTPYNI 301
>gi|120561197|gb|ABM26984.1| RNA polymerase II largest subunit, partial [Sclerotinia
sclerotiorum]
Length = 1011
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 138/325 (42%), Positives = 191/325 (58%), Gaps = 24/325 (7%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPV+H GF+ KT K+L VC C K+ + S+P + V + +RR I+
Sbjct: 1 HIELAKPVYHPGFLKKTKKLLEMVCHNCGKVKLDRSNPAYKAAV--SIRDPKRRFEAIWK 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
LCK K IC+ +M+ + A DP + K+ HGGCG QP +R++ L L WK +
Sbjct: 59 LCKTKMICDSDVQMNEEEFNA-DPK--EAAKKSHGGCGNIQPEVRQTALALWGTWKAPKD 115
Query: 202 DSQEKKIP---LTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVNEDSQEK- 254
+ E P + LN + I+ GL+ EW +
Sbjct: 116 EDGEAVQPDKRQITPDMALNVFRSMSTA-----EIQDVGLNADYARPEWMIITVLPVPPP 170
Query: 255 ----KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVA 307
I + G G + DDLT+KL DII+ N + + + G+ H++ + +LQ+HVA
Sbjct: 171 PVRPSISMDGTGQGMRGEDDLTYKLGDIIRANGNVRQAQQEGSPQHILQDFETLLQYHVA 230
Query: 308 TLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRI 367
T DND+ G P A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +
Sbjct: 231 TYMDNDIAGQPPALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSL 290
Query: 368 DQVGVPRSIAQNMTFPEIVTPFNMD 392
D+VGVPRSIA+ +T+PE VTP N+D
Sbjct: 291 DEVGVPRSIARILTYPETVTPLNID 315
>gi|119514045|gb|ABL75795.1| RNA polymerase II largest subunit [Imshaugia aleurites]
Length = 357
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 138/315 (43%), Positives = 183/315 (58%), Gaps = 31/315 (9%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV ++P D + + ++R ++ LCK K ICE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDETNPAFADAIRRR--DPKKRFDLVWRLCKPKMICE--T 56
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
M + D D + + K HGGCG QP +RR GL LT WK NE Q +K
Sbjct: 57 TMAFDDDAPSDKS--KEPKHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPEKK 114
Query: 209 PLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGKGV 263
P+T + L R+ +I+R GL EW + V
Sbjct: 115 PITPQMAL--------NIFRHISTEDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISV 166
Query: 264 L-------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+ G
Sbjct: 167 DGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAG 226
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 227 QPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 286
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP+N+
Sbjct: 287 ARTLTYPETVTPYNI 301
>gi|125657572|gb|ABN48849.1| RNA polymerase II largest subunit [Miliolidae sp. DL-2007]
Length = 462
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 137/325 (42%), Positives = 194/325 (59%), Gaps = 11/325 (3%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA+P +H GF++ ++K+L+CVC+YCSKLLV S + V L+ K R
Sbjct: 1 ECPGHFGHIELARPCYHCGFLSVSLKVLKCVCYYCSKLLVDKSSNSFKQV-LEIKN-PRE 58
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAE----DPNSLQNKKQGHGGCGRYQPNIRR-SG 189
R I L + C GD +D K+ E + ++ + GCG+ QP R+ G
Sbjct: 59 RLIEIEKLAQRTKHCGRGDSIDDKKNNDELDNINSDNDXDNDITKSGCGQEQPKYRKGQG 118
Query: 190 LDLTAEWKHVNEDSQEKKIPLTGKGV--LLNK-KQGHGGCGRYQPNIRRSGLDLTAEWKH 246
+ L E+ + ++K+ L+ K V + N+ + P + L
Sbjct: 119 VKLFIEFPESKDHGEDKRQNLSAKQVYEIFNRITDMDAQIMGFNPQFCKPSWLLITILP- 177
Query: 247 VNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHV 306
V+ + + + G DDLTHK+ DI+K NN L R E+ G HV+ E I++LQ+HV
Sbjct: 178 VSPPAVRPFVLMDGMRPSQDDLTHKVYDILKTNNALKRQEARGVPEHVLEELIELLQYHV 237
Query: 307 ATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLR 366
T+ DN++ G P+A QKSGKP+K+++ RL GK GR+RGNLMGKR DFSARTVI DPNL
Sbjct: 238 TTMMDNEVSGQPQAKQKSGKPIKSLRQRLVGKAGRVRGNLMGKRCDFSARTVIGGDPNLS 297
Query: 367 IDQVGVPRSIAQNMTFPEIVTPFNM 391
ID+VGVPRSIA N+T+P VT +N+
Sbjct: 298 IDEVGVPRSIALNLTYPGRVTKYNL 322
>gi|394998767|gb|AFN44302.1| RNA polymerase II largest subunit, partial [Megaloblastenia
marginiflexa]
Length = 355
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 140/315 (44%), Positives = 184/315 (58%), Gaps = 32/315 (10%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+P + L+ + RR A ++ LCK K CE
Sbjct: 1 FLTKIKKLLETVCHNCGKILVDESNPAFVEA-LRFRDPKRRFDA-VWRLCKPKMTCETSV 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
+D E+P + K HGGCG QP +RR L LT WK NE Q +K
Sbjct: 59 PID-----DENPEKSKEPKHDHGGCGNIQPEVRREALKLTGTWKAQKGDEENEGQQAEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPL 258
P+T + L R+ I++ GL EW + I +
Sbjct: 114 PITPQMAL--------NIFRHISSEEIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISM 165
Query: 259 TGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
G G + DDLT+KL DII+ N + R + G+ HV+ E +LQFHVAT DND+ G
Sbjct: 166 DGAGGMRGEDDLTYKLGDIIRANGNVKRCDLDGSPAHVVQEFENLLQFHVATYMDNDIAG 225
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
LP+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 226 LPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 285
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP+N+
Sbjct: 286 ARTLTYPETVTPYNI 300
>gi|343482716|gb|AEM45103.1| RNA polymerase II largest subunit [Archaeorhizomyces finlayi]
Length = 740
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 149/364 (40%), Positives = 190/364 (52%), Gaps = 108/364 (29%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PVFH+GF K KIL CVCF C KL V S+PK + + +SR A +++
Sbjct: 1 HIELARPVFHIGFFDKVKKILECVCFSCGKLKVDESNPKFVEALRYRDPKSRL--AAVWN 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
+ K K +CE M ED PN++ + DL +
Sbjct: 59 VAKTKLVCEMSPPM-------ED-----------------DPNVKDAIKDLAS------- 87
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNED----SQEKKI- 256
HGGCG QP+I+R GL L WK ++D S EKK+
Sbjct: 88 ---------------------HGGCGNLQPSIKRDGLKLYGSWKKSSKDLEDVSAEKKLI 126
Query: 257 ----PLT--------------------------------------------GKGVLLDDL 268
LT GKG DDL
Sbjct: 127 TPAEVLTVFKHISSEDLAKMGLNEEYAKPEWMIITVLPVPPPPVRPSINNEGKGRGEDDL 186
Query: 269 THKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQK-SGKP 327
THKLADIIK N+ + R E GA H+ +E ++LQFHVAT DND+ G P+A+QK +G+P
Sbjct: 187 THKLADIIKANSNVRRCEQEGAPAHITSEFEQLLQFHVATYMDNDIAGQPQALQKKTGRP 246
Query: 328 LKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVT 387
+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D VGVPRSIA+ +T+PE VT
Sbjct: 247 VKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDAVGVPRSIAKTLTYPETVT 306
Query: 388 PFNM 391
PFN+
Sbjct: 307 PFNI 310
>gi|206601409|gb|ACI16423.1| RNA polymerase II largest subunit [Trimmatothele perquisita]
Length = 392
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 183/331 (55%), Gaps = 26/331 (7%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHP-----KVRDVVLKTK 129
ECPGHFG I LA PV+H GF+ K K+L VC C K+ S VRD
Sbjct: 1 ECPGHFGAIKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSEELRFAHGVRD------ 54
Query: 130 GQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSG 189
++R I+ L + +N+C+ D DG + ++ K HGGCG QP +R++G
Sbjct: 55 --RKKRFELIWRLSQKQNVCQA----DTPDDGDDPMAKEKSGKTSHGGCGNAQPQLRKTG 108
Query: 190 LDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVN 248
L+L A++K D +E+ +P + Q LD EW +
Sbjct: 109 LELWAQYKPRKGDDEEEAVPEKSQIWPAQALQVFQHLTDETLETLGMSLDFARPEWMILQ 168
Query: 249 E-----DSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
I + G G DDLT KL DII+ N LIR + GA H+ E
Sbjct: 169 SLPVPPPPVRPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINTDGAPDHIARELQA 228
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
+LQ+HVAT DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT
Sbjct: 229 LLQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVIT 288
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DPNL +D+VGVPRSIA+ +T+PE VT FN+
Sbjct: 289 GDPNLSLDEVGVPRSIARTLTYPETVTQFNI 319
>gi|119514098|gb|ABL75822.1| RNA polymerase II largest subunit [Aspicilia caesiocinerea]
Length = 989
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 138/316 (43%), Positives = 190/316 (60%), Gaps = 33/316 (10%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S P++ D ++ + RR A I+ LCK K +CE
Sbjct: 1 FMTKIKKVLEIVCHNCGKILVDESDPQMADA-MRYRDPKRRFDA-IWRLCKPKMVCES-- 56
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
M + D +D + + K HGGCG QP +R+ L T WK NE Q +K
Sbjct: 57 -MPVADD--DDMDKSKGPKHDHGGCGNIQPEVRKEPLGFTGTWKAQKGDEENEGQQPEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-------KI 256
P+T + L R+ I++ GL EW ++ +
Sbjct: 114 PITPQMAL--------NIFRHISTDEIKKMGLSNDYARPEWMIISVLPVPPPPVRPSISV 165
Query: 257 PLTGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
TG+G DDLTHKL+D+I+ N + R E+ G+ HV++E +LQ+HVAT DND+
Sbjct: 166 DGTGQGSRGEDDLTHKLSDVIRANGNVRRCETEGSPAHVVSEFEALLQYHVATYMDNDIA 225
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G+P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRS
Sbjct: 226 GIPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRS 285
Query: 376 IAQNMTFPEIVTPFNM 391
IA+ +T+PE VTP+N+
Sbjct: 286 IARTLTYPETVTPYNI 301
>gi|119514047|gb|ABL75796.1| RNA polymerase II largest subunit [Pseudevernia consocians]
Length = 355
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 139/315 (44%), Positives = 183/315 (58%), Gaps = 31/315 (9%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+P D + + ++R ++ LCK K ICE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESNPAFADAIRRR--DPKKRFDSVWRLCKPKMICE--T 56
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
M ++ D D + K HGGCG QP +RR GL LT WK NE Q +K
Sbjct: 57 TMALDDDTPSD--KTKEPKHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPEKK 114
Query: 209 PLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGKGV 263
P+T + L R+ +I+R GL EW + V
Sbjct: 115 PITPQMAL--------NIFRHISTDDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISV 166
Query: 264 L-------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+ G
Sbjct: 167 DGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAG 226
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 227 QPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 286
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP+N+
Sbjct: 287 ARTLTYPETVTPYNI 301
>gi|394998761|gb|AFN44299.1| RNA polymerase II largest subunit, partial [Letrouitia domingensis]
Length = 355
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 137/315 (43%), Positives = 184/315 (58%), Gaps = 32/315 (10%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K KIL VC C K+LV S+P D + +RR ++ LCK K +CE
Sbjct: 1 FLGKIKKILETVCHNCGKILVDESNPAFVDA--QRIRDPKRRFDAVWRLCKPKTLCETSM 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
D ++P L+ + HGGCG QP +RR L LT WK NE+ +K
Sbjct: 59 PAD-----GDNPEKLKEPRHDHGGCGNIQPEVRREALKLTGTWKARKGDDENEEQPAEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPL 258
P+T + L R+ +I++ GL EW + I +
Sbjct: 114 PITPQMAL--------NVFRHISTQDIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISV 165
Query: 259 TGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
G + DDLT+KL DII+ N + R E+ GA H+++E +LQFHVAT DND+ G
Sbjct: 166 DGANGMRGEDDLTYKLGDIIRANGNVRRCENDGAPAHIVSEFENLLQFHVATYMDNDIAG 225
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
LP+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 226 LPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 285
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP+N+
Sbjct: 286 ARTLTYPETVTPYNI 300
>gi|397568287|gb|EJK46059.1| hypothetical protein THAOC_35301 [Thalassiosira oceanica]
Length = 1754
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 157/419 (37%), Positives = 218/419 (52%), Gaps = 82/419 (19%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEG----GIKFP------ETMEGGRPKLGGLMDP 55
S A LR +KK+QFGI++P+E+R+ SVT+ G K P ET G+P GG+ DP
Sbjct: 27 STARLRRIKKLQFGIINPEELRQYSVTQAITVNGRKIPAGVTRYETYMAGQPVYGGVNDP 86
Query: 56 RQGVI-DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLV 114
R G I D+S PG+FGHIDLA+PV+H GF+ T+K LRCVCF+CS++ V
Sbjct: 87 RLGDIHDKSD------------PGYFGHIDLARPVYHYGFLDVTLKALRCVCFHCSRITV 134
Query: 115 SPSHPKVRDVVLKTKG--QSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKK 172
+ K + K +G +RR +++L + K C+
Sbjct: 135 EDTEFKFK----KARGIKNRKRRLNAMHELIRPKKRCDH--------------------- 169
Query: 173 QGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPN 232
C +QP + GL + E+ D E+ +G Q + P+
Sbjct: 170 -----CNGFQPKYTKVGLHVEIEYA----DEMERMPGTSGDKKQFFSAQKAVEIFEFTPS 220
Query: 233 IRRS--------GLDLT---AEWKHVNEDSQEKKIPLTGKGVLL---------DDLTHKL 272
+R GLD+T EW + S PL + ++ DDLTH+L
Sbjct: 221 SKRMRDEDAKALGLDVTWARPEWTCI---SVMPVPPLHVRPSVVMGGGAQSSEDDLTHQL 277
Query: 273 ADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIK 332
+I+K N L +G ++ + + LQ +V +N++ G+P+ Q+SG+PLK +
Sbjct: 278 VNIVKSNIALRTAIKNGEPNIIVEQFEQALQHNVCAFMNNELRGMPQVTQRSGRPLKTLT 337
Query: 333 ARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RLK KEGRIRGNLMGKRVDFSARTVIT DPNL I QVGVPRSIA N+T P VTPFN+
Sbjct: 338 QRLKSKEGRIRGNLMGKRVDFSARTVITADPNLGIHQVGVPRSIAMNLTVPTRVTPFNI 396
>gi|123979354|gb|ABM81502.1| RNA polymerase II largest subunit [Parmeliella sp. AFTOL 334]
Length = 982
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 142/316 (44%), Positives = 186/316 (58%), Gaps = 34/316 (10%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEG-G 152
F+TK K+L VC C K+L S+P D L+ + RR A I+ LCK K +CE
Sbjct: 1 FMTKIKKLLETVCHNCGKILHDESNPAFADA-LRYRDPKRRFDA-IWRLCKPKMVCETIS 58
Query: 153 DEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKK 207
D N D ++P K HGGCG QP +RR GL LT WK NE Q +K
Sbjct: 59 ASEDDNLDKPKEP------KHDHGGCGNVQPEVRREGLRLTGTWKVQKGDEENEGQQNEK 112
Query: 208 IPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIP 257
P+T + L R+ I++ GL +W + I
Sbjct: 113 KPITPQMAL--------NIFRHISTEEIKKMGLSNDYARPDWMIITVLPVPPPPVRPSIS 164
Query: 258 LTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+ G + DDLT+KL DII+ N + R E+ G+ HV+AE ++LQFHVAT DND+
Sbjct: 165 VDGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVAEFEQLLQFHVATYMDNDIA 224
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRS
Sbjct: 225 GQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRS 284
Query: 376 IAQNMTFPEIVTPFNM 391
IA+ +T+PE VTP+N+
Sbjct: 285 IAKTLTYPETVTPYNI 300
>gi|149794935|gb|ABR31763.1| RNA polymerase II largest subunit [Capronia munkii]
Length = 991
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/321 (43%), Positives = 183/321 (57%), Gaps = 26/321 (8%)
Query: 85 LAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCK 144
LA PV+H GF++K KIL VC C K+ S R + L+ + +RR ++ L K
Sbjct: 1 LATPVYHYGFMSKVKKILETVCHNCGKIKALDSEEFRRAISLRDR---KRRFDAVWRLSK 57
Query: 145 GKNICEGGDEMDINKDGAEDPNS-LQNKKQ-GHGGCGRYQPNIRRSGLDLTAEWKHVNED 202
+NICE D EDP+ L+ Q HGGCG QP+IRR+GL L A WK +
Sbjct: 58 PRNICEA--------DPPEDPDQPLKGPPQPKHGGCGNMQPDIRRTGLQLWATWKASKAE 109
Query: 203 SQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVNE-----DSQEK 254
+E P K + + + + GL L EW ++
Sbjct: 110 DEEDTAP--DKKRIFPQDALNTFRTLTDETLEMMGLSLDYARPEWMILSALPVPPPPVRP 167
Query: 255 KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
I + G G DDLT KL DII+ N ++R E G H+ + +LQ+H+AT D
Sbjct: 168 SISVDGSGQGSRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMD 227
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
ND+ GL RA KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VG
Sbjct: 228 NDIAGLERAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVG 287
Query: 372 VPRSIAQNMTFPEIVTPFNMD 392
VPRSIA+ +T+PE VTPFN+D
Sbjct: 288 VPRSIARTLTYPETVTPFNLD 308
>gi|37726869|gb|AAO38801.1| DNA-dependent RNA polymerase II largest subunit [Gregarina
niphandrodes]
Length = 1020
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/353 (39%), Positives = 190/353 (53%), Gaps = 80/353 (22%)
Query: 77 PGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQ 136
PGHFGHI+ KPVF++GF+ I +LRCVC+ C KLLVS + V ++ +G R R
Sbjct: 1 PGHFGHIEFVKPVFNIGFLPAVITVLRCVCYSCGKLLVSQDDARFLSV-MRIRG-PRARL 58
Query: 137 AFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEW 196
A + LC+ K CE G E GGCG QP R+ +++ ++
Sbjct: 59 AKLLTLCRTKPSCEPGPE---------------------GGCGCLQPQYRKDNVNILVDF 97
Query: 197 KHV-------NEDSQEK---------KIPLTGKGVL--LNKKQGHGGCGRYQPNIRRSGL 238
+E +E K + + VL +K H +++ G
Sbjct: 98 GAAAAAGAGGDESGRENGGDDQIGDTKRVFSAEEVLAVFSKISEH--------DMKLMGF 149
Query: 239 DLTAE-------------------WKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCN 279
D+T + H D E DDLT KL DI+K N
Sbjct: 150 DITFARPSWMVIQSMLVIPPCVRPYVHFGSDRSE------------DDLTIKLLDIVKVN 197
Query: 280 NELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKE 339
+L + ES+G A HV+ E + +LQ+HVAT +N++PGLP A KS KP+K+I+ RLKGKE
Sbjct: 198 RQLQKYESTGVAQHVVQETVAVLQYHVATFMNNEIPGLPVATTKSKKPMKSIRERLKGKE 257
Query: 340 GRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
GR+RGNLMGKRVDFSARTVIT DPNL+IDQVGVPRSIA N+T+PE+VT N++
Sbjct: 258 GRLRGNLMGKRVDFSARTVITGDPNLQIDQVGVPRSIAMNLTYPELVTSMNLE 310
>gi|394998763|gb|AFN44300.1| RNA polymerase II largest subunit, partial [Letrouitia parabola]
Length = 355
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/315 (43%), Positives = 185/315 (58%), Gaps = 32/315 (10%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K KIL VC C K+LV S+P D + +RR ++ LCK K +CE
Sbjct: 1 FLGKIKKILETVCHNCGKILVDESNPAFVDS--QRIRDPKRRFDAVWRLCKPKTLCETSM 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
D ++P L+ + HGGCG QP +RR L LT WK NE+ +K
Sbjct: 59 LAD-----GDNPEKLKEPRHDHGGCGNIQPEVRREALKLTGTWKARKGDDENEEQPAEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPL 258
P+T + L R+ +I++ GL EW + I +
Sbjct: 114 PITPQMAL--------NVFRHISTEHIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISV 165
Query: 259 TGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
G + DDLT+KL DII+ N + R E+ GA H+++E ++LQFHVAT DND+ G
Sbjct: 166 DGANGMRGEDDLTYKLGDIIRANGNVRRCENDGAPAHIVSEFEQLLQFHVATYMDNDIAG 225
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
LP+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 226 LPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 285
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP+N+
Sbjct: 286 ARTLTYPETVTPYNI 300
>gi|113957457|gb|ABI49115.1| RNA polymerase II largest subunit [Lobariella pallida]
Length = 996
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/316 (44%), Positives = 186/316 (58%), Gaps = 34/316 (10%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICE-GG 152
F+TK K+L VC C K+LV S+P D L+ + RR A I+ LCK K +CE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESNPAFADA-LRFRDPKRRFDA-IWRLCKPKLVCETAA 58
Query: 153 DEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKK 207
D N D ++P K HGGCG QP +RR G+ L WK NE Q +K
Sbjct: 59 VTEDENMDKTKEP------KHDHGGCGNVQPEVRREGMKLNGTWKPQKGDEENEGQQPEK 112
Query: 208 IPLTGKGVLLNKKQGHGGCGRYQPN--IRRSGLD---LTAEWKHVN-----EDSQEKKIP 257
P+T + L R+ N IR+ GL EW + I
Sbjct: 113 KPITPQTAL--------NIFRHISNDEIRKMGLSSDYARPEWMIITVLPVPPPPVRPSIS 164
Query: 258 LTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+ G + DDLT+KL DII+ + + E+ G+ HV+A+ ++LQFHVAT DND+
Sbjct: 165 VDGGNGMRGEDDLTYKLGDIIRASGNVRTCEAEGSPAHVVADFEQLLQFHVATYMDNDIA 224
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRS
Sbjct: 225 GQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRS 284
Query: 376 IAQNMTFPEIVTPFNM 391
IA+ +T+PE VTP+N+
Sbjct: 285 IARTLTYPETVTPYNI 300
>gi|206601357|gb|ACI16397.1| RNA polymerase II largest subunit [Polyblastia gotlandica]
Length = 392
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/327 (42%), Positives = 184/327 (56%), Gaps = 18/327 (5%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFG I LA PV+H GF+ K K+L VC C K+ S V + + ++
Sbjct: 1 ECPGHFGTIKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAIESEDLRYAVSTRDR---KK 57
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLT 193
R I+ L + +N+C+ D +DPN+ + K HGGCG QP IR++GL+L
Sbjct: 58 RFELIWRLSQKQNVCQADSPED-----EDDPNAKEKGGKIRHGGCGNAQPVIRKTGLELW 112
Query: 194 AEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE--- 249
A++K D +E+ +P + Q LD EW +
Sbjct: 113 AQFKPRKGDDEEETVPEKSQIWPAQALQIFQHLTDETLETLGMNLDFARPEWMILQSLPV 172
Query: 250 --DSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQF 304
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+
Sbjct: 173 PPPPVRPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQY 232
Query: 305 HVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
HVAT DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPN
Sbjct: 233 HVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPN 292
Query: 365 LRIDQVGVPRSIAQNMTFPEIVTPFNM 391
L +D+VGVPRSIA+ +T+PE VTP N+
Sbjct: 293 LSLDEVGVPRSIARTLTYPETVTPSNI 319
>gi|119514092|gb|ABL75819.1| RNA polymerase II largest subunit [Ochrolechia yasudae]
Length = 355
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/320 (43%), Positives = 189/320 (59%), Gaps = 41/320 (12%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICE--- 150
F++KT K+L VC C K+L S P++ + ++R I+ LCK K++CE
Sbjct: 1 FMSKTKKLLEVVCHNCGKILADESEPEMAEACRYR--DPKKRFNAIWTLCKKKSVCETTV 58
Query: 151 -GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQ 204
G DE N D +++P K HGGCG QP IRR GL LT WK N+ Q
Sbjct: 59 VGDDE---NMDKSKEP------KHDHGGCGNRQPQIRREGLKLTGTWKAEKGDEENDGQQ 109
Query: 205 EKKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVN-----EDSQEK 254
+K P+T + L R+ +I++ GL EW +
Sbjct: 110 AEKKPITPQMAL--------NIFRHISDEDIKKMGLSNDYARPEWMIITVLPVPPPPVRP 161
Query: 255 KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
I + G G + DDLT+KL DII+ N + R E+ G+ HV+ E ++LQ+HVAT D
Sbjct: 162 SISVDGSGQGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQYHVATYMD 221
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
ND+ G P+A+Q SG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VG
Sbjct: 222 NDIAGQPQALQSSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVG 281
Query: 372 VPRSIAQNMTFPEIVTPFNM 391
VPRSIA+ +T+PE VTP+N+
Sbjct: 282 VPRSIARTLTYPETVTPYNI 301
>gi|111154418|gb|ABH07423.1| RNA polymerase II largest subunit [Monascus purpureus]
Length = 382
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 187/325 (57%), Gaps = 21/325 (6%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA PV+H+GF+ K K+L VC C K+ + S PK + + +RR I+
Sbjct: 1 HIELATPVYHIGFLAKIKKLLETVCHNCGKIKANTSDPKFLEAIRMR--DPKRRFDHIWR 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKK--QGHGGCGRYQPNIRRSGLDLTAEWK-H 198
L K ++C+ D ++P + + K +GHGGCG QP IR+ G+ L WK +
Sbjct: 59 LSKDVSVCDADPPAD-----EDEPYTKEGAKPVRGHGGCGNSQPTIRKEGITLVGTWKPN 113
Query: 199 VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEKK 255
N + +P K V+ + + ++R GL EW +
Sbjct: 114 KNMVDDDMDMPQPEKKVITPQMALNVFKAISSEDVRIMGLSNDYARPEWMIITVLPVPPP 173
Query: 256 IPL--------TGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVA 307
T DDLT+KLA+I++ N + R E GA HV+ E +LQ+HVA
Sbjct: 174 PVRPSVLVGGSTSXQRGEDDLTYKLAEIVRANQNVQRCEQEGAPEHVVREFESLLQYHVA 233
Query: 308 TLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRI 367
T DND+ G P+AMQKS +P+KAI++RLKGKEGR+R NLMGKRVDFSARTVIT DPNL +
Sbjct: 234 TYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSL 293
Query: 368 DQVGVPRSIAQNMTFPEIVTPFNMD 392
D+VGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 294 DEVGVPKSIAKTLTYPEVVTPYNID 318
>gi|119514110|gb|ABL75828.1| RNA polymerase II largest subunit [Lecidella euphorea]
Length = 356
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/317 (44%), Positives = 184/317 (58%), Gaps = 35/317 (11%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L +C C K+LV S+P D L+ + RR A ++ LCK K ICE
Sbjct: 1 FMTKIKKLLETICHNCGKILVDESNPGFVDA-LRYRDPKRRFDA-VWRLCKPKMICETTA 58
Query: 154 EMD--INKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEK 206
+D + D +++P K HGGCG QP IRR GL LT WK NE Q +
Sbjct: 59 PLDDDVPADKSKEP------KHDHGGCGNIQPEIRREGLRLTGTWKPQKGDEENEGQQPE 112
Query: 207 KIPLTGKGVLLNKKQGHGGCGRYQP--NIRRSGLD---LTAEWKHVNEDSQEKKIPLTGK 261
K P+T + L R+ IRR GL EW +
Sbjct: 113 KKPITPQMAL--------SIFRHISIDEIRRMGLSNDYARPEWMIITVLPVPPPPVRPSI 164
Query: 262 GVL-------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM 314
V DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+
Sbjct: 165 SVDGGQGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDI 224
Query: 315 PGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPR
Sbjct: 225 AGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPR 284
Query: 375 SIAQNMTFPEIVTPFNM 391
IA+ +T+PE VTP+N+
Sbjct: 285 HIARTLTYPETVTPYNI 301
>gi|242398380|ref|YP_002993804.1| DNA-directed RNA polymerase subunit alpha [Thermococcus sibiricus
MM 739]
gi|242264773|gb|ACS89455.1| DNA-directed RNA polymerase subunit alpha [Thermococcus sibiricus
MM 739]
Length = 905
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 151/391 (38%), Positives = 204/391 (52%), Gaps = 40/391 (10%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTC 69
+ + ++FG+LSP EIR+MS E I P+T E G P GGLMD R GVID + RC+TC
Sbjct: 6 KVIGSIEFGVLSPQEIRKMSAAE--ITVPDTYSEDGYPIDGGLMDRRLGVIDPNLRCETC 63
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTK 129
N ECPGHFGHI+LA+PV HVGF + L C C ++ ++ ++ D K
Sbjct: 64 GANYKECPGHFGHIELARPVIHVGFAKTIYRTLESTCRECGRIKLTDE--EIEDYFGKLN 121
Query: 130 GQSRRRQAF------IYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRY 181
R+ I+ K + +C G + I + L+ ++G+ R
Sbjct: 122 INEARKSEIDALISEIHKKAKERMVCPHCGAPQFSIKFERPTIYWELRTDEEGNEYRHRM 181
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
P+ R L E +K +PL G LN + N R + LT
Sbjct: 182 MPSEIRDRL----------EKIPDKDLPLLG----LNPE-----------NSRPEWMVLT 216
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V S I L DDLTHKL DII+ N L +N +GA +I + +
Sbjct: 217 V--LPVPPVSVRPSITLESGIRAEDDLTHKLVDIIRINARLKQNIEAGAPQLIIEDLWDL 274
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+HV T DN+ G+P A KSG+PLK + RLKGKEGR R NL GKRV+FSARTVI+P
Sbjct: 275 LQYHVTTYFDNETSGIPPAKHKSGRPLKTLAQRLKGKEGRFRKNLSGKRVNFSARTVISP 334
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DP + I++VGVP +A +T PE VT FN++
Sbjct: 335 DPMISINEVGVPLIVAMELTVPEKVTDFNLE 365
>gi|119514027|gb|ABL75786.1| RNA polymerase II largest subunit [Candelariella terrigena]
Length = 363
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/314 (44%), Positives = 185/314 (58%), Gaps = 25/314 (7%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+P+ + L+ + RR +A ++ LCK K +CE D
Sbjct: 1 FITKIKKLLETVCHNCGKILVDESNPQFTEA-LRFRDPKRRFEA-VWRLCKPKMVCETDD 58
Query: 154 EMDINK---DGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPL 210
+ + D ++P L+N HGGCG QP +RR GL L WK D + +P
Sbjct: 59 DSKDDDFPGDSLKEPKKLRN----HGGCGNVQPEVRREGLKLMGTWKTPKGDEDSENLPN 114
Query: 211 TGKGVLLNKKQGHGGCGR--YQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTG 260
K + Q R IR+ GL EW + I + G
Sbjct: 115 EKKPIT---PQAALNIFRNISTEEIRKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDG 171
Query: 261 KGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGL 317
G + DDLT+KL DII+ N + R E G+ HV+ E +LQFHVAT DND+ G
Sbjct: 172 SGQGMRGEDDLTYKLGDIIRANGNVRRCEQEGSPAHVVQEFESLLQFHVATYMDNDIAGQ 231
Query: 318 PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 377
P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA
Sbjct: 232 PQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIA 291
Query: 378 QNMTFPEIVTPFNM 391
+ +T+PE VTP+N+
Sbjct: 292 RTLTYPETVTPYNI 305
>gi|83320432|gb|ABC02843.1| RNA polymerase II largest subunit, partial [Dimargaris
bacillispora]
Length = 753
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 142/327 (43%), Positives = 195/327 (59%), Gaps = 25/327 (7%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPV+H+GF+TK KIL CVCF+CS+L V R V + + R ++
Sbjct: 1 HIELAKPVYHIGFITKVKKILECVCFHCSRLRVDMGDN--RYVAARKIRDPKARLKKMHA 58
Query: 142 LCKGKNICEGGDEMDINKDG--AEDPNSLQNKKQGHGG-------CGRYQPNIRRSGLDL 192
+CK + CE +DG A D NSL G CG+ P R+ GL L
Sbjct: 59 ICKDRKRCEPSAGF---RDGKTAPDENSLGVDTAISFGAKGVPECCGQAHPTFRKEGLRL 115
Query: 193 TAEWKHVNED---SQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK---- 245
K N+D +Q+ K L V+ K+ ++ S + EW
Sbjct: 116 FMVSKVRNDDGGPAQDTKEILHAARVVQVLKRI---ADETIQDLGLSPVFARPEWMILTV 172
Query: 246 -HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQF 304
V + I + G DDLTHKL DIIK N + E++GA H+I +++++L++
Sbjct: 173 LPVPPPAVRPSIQMDGTSKGEDDLTHKLNDIIKANQRVRDCETNGAPQHIIDQDVQLLEY 232
Query: 305 HVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
H+AT +ND+ G+P+A+QKSG+PLK+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPN
Sbjct: 233 HIATYMNNDVSGIPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPN 292
Query: 365 LRIDQVGVPRSIAQNMTFPEIVTPFNM 391
L ID+VGVPRSIA+N+T+PE+VTP+N+
Sbjct: 293 LSIDEVGVPRSIARNLTYPELVTPYNI 319
>gi|394998765|gb|AFN44301.1| RNA polymerase II largest subunit, partial [Letrouitia vulpina]
Length = 355
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 136/315 (43%), Positives = 185/315 (58%), Gaps = 32/315 (10%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+LV S+P D + +RR ++ LCK K +CE
Sbjct: 1 FLGKIKKLLETVCHNCGKILVDESNPAFVDA--QRIRDPKRRFDAVWRLCKPKTLCETSM 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
+D ++P L+ + HGGCG QP +RR L LT WK NE+ +K
Sbjct: 59 PVD-----GDNPEKLKEPRHDHGGCGNIQPEVRREALKLTGTWKARKGDDENEEQPAEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPL 258
P+T + L R+ +I++ GL EW + I +
Sbjct: 114 PITPQMAL--------NVFRHISTEDIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISV 165
Query: 259 TGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
G + DDLT+KL DII+ N + R E+ GA H+++E ++LQFHVAT DND+ G
Sbjct: 166 DGANGMRGEDDLTYKLGDIIRANGNVRRCENDGAPAHIVSEFEQLLQFHVATYMDNDIAG 225
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
LP+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 226 LPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 285
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP N+
Sbjct: 286 ARTLTYPETVTPXNI 300
>gi|119514039|gb|ABL75792.1| RNA polymerase II largest subunit [Loxospora ochrophaea]
Length = 975
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 137/317 (43%), Positives = 188/317 (59%), Gaps = 35/317 (11%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICE--- 150
F+TK KIL VC C K+LV S + R+ + ++R ++ LC+ KN+CE
Sbjct: 1 FMTKIKKILETVCHGCGKILVDESSAEFREAM--GYRSPKKRFELVWRLCQKKNVCEKNA 58
Query: 151 GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQE 205
GG++ D K +++P K HGGCG QP IRR GL L WK NE Q
Sbjct: 59 GGEDNDFEK--SKEP------KHDHGGCGNIQPQIRREGLRLIGTWKAQKGDEENEGQQP 110
Query: 206 KKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIP 257
+K P+T + L +Q +I++ GL EW + I
Sbjct: 111 EKKPITPQMALTVFRQ------IVPEDIKKMGLSNDYARPEWMIITVLPVPPPPVRPSIS 164
Query: 258 LTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM 314
+ G + DDLT+KL DII+ N + R E+ G+ H++ E ++LQFHVAT DND+
Sbjct: 165 IDGSAQGMRGEDDLTYKLGDIIRANGNVRRCEADGSPAHIVHEFGELLQFHVATYMDNDI 224
Query: 315 PGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
G P+A+QKSG+P+K+ +ARLKGK+GR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPR
Sbjct: 225 AGQPQALQKSGRPVKSSRARLKGKDGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPR 284
Query: 375 SIAQNMTFPEIVTPFNM 391
SIA+ +T+PE VTP+N+
Sbjct: 285 SIARTLTYPETVTPYNI 301
>gi|120561199|gb|ABM26985.1| RNA polymerase II largest subunit, partial [Trichophyton rubrum]
Length = 1015
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 190/331 (57%), Gaps = 35/331 (10%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+L+ PVFH+GF+TK K+L VC C K+ + S K D L+ + +R A I+
Sbjct: 1 HIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQKYLDA-LRFRDPKKRFDA-IWR 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKK--QGHGGCGRYQPNIRRSGLDLTAEWKHV 199
L K ICE + +DP + ++ K QGHGGCG QP +R+ G+ L WK
Sbjct: 59 LSKDILICEA------DPPEEDDPFAKESSKPVQGHGGCGNVQPQVRKEGITLMGTWKPS 112
Query: 200 --------NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVN 248
NE Q +K +T + L + + ++R GL EW +
Sbjct: 113 KMRDMMDDNEIQQPEKKQITPQMALTIFRNIS------EEDVRLMGLSNDYARPEWMIIT 166
Query: 249 EDSQEKKIPL-------TGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
+G G DDLT+KLA+II+ N + R E G+ HV+ E
Sbjct: 167 VLPVPPPPVRPSVLVGGSGTGQRGEDDLTYKLAEIIRANQNVTRCEQEGSPEHVVREFES 226
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
+LQ+HVAT DND+ G+P+AMQKS +P+KAI+ RLKGKEGR+R NLMGKRVDFSARTVIT
Sbjct: 227 LLQYHVATYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVIT 286
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DPNL +D+VGVP SIAQ +T+PE+VTP+N+
Sbjct: 287 GDPNLSLDEVGVPISIAQTLTYPEVVTPYNI 317
>gi|123979326|gb|ABM81488.1| RNA polymerase II largest subunit [Lecanora achariana]
Length = 791
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 141/318 (44%), Positives = 185/318 (58%), Gaps = 36/318 (11%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICE--- 150
F+TK KIL VC C K+LV S+P + L+ + RR A ++ LCK K ICE
Sbjct: 1 FMTKIKKILETVCHNCGKILVDESNPAFTEA-LRYRDPKRRFDA-VWRLCKPKMICEQTV 58
Query: 151 GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQE 205
D D ++ +++P K HGGCG QP IRR GL L +K NE Q
Sbjct: 59 TADNDDSDQGKSKEP------KHDHGGCGNIQPEIRREGLKLNGTYKPQKGDEENEGQQP 112
Query: 206 KKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTG 260
+K P++ + L R+ +IRR GL EW +
Sbjct: 113 EKKPISAQMAL--------NIFRHISTDDIRRMGLSNDYARPEWMIITVLPVPPPPVRPS 164
Query: 261 KGVL-------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDND 313
V DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND
Sbjct: 165 ISVDGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDND 224
Query: 314 MPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVP 373
+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVP
Sbjct: 225 IAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVP 284
Query: 374 RSIAQNMTFPEIVTPFNM 391
RSIA+ +T+PE VTP+N+
Sbjct: 285 RSIARTLTYPETVTPYNI 302
>gi|120561207|gb|ABM26989.1| RNA polymerase II largest subunit, partial [Hydnum repandum]
Length = 1010
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 187/321 (58%), Gaps = 17/321 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PVFHVGF+ K KIL CVC C +L + S + LK + R ++D
Sbjct: 1 HIELARPVFHVGFLGKVKKILECVCVQCGRLKIDFSDVSFVEK-LKHIRDVKVRMTKVHD 59
Query: 142 LCKGKNICEGGD-EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHV- 199
CKGK IC+ + +MD D P++L+ GCG QP IR+ L L +K +
Sbjct: 60 HCKGKMICDATEPDMDTEADQNAIPDALKKT-----GCGHVQPLIRKEALKLFLVYKKIK 114
Query: 200 NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVNEDSQEKKI 256
++D Q+ + L K + + ++ GL + EW +
Sbjct: 115 DDDEQDIRTQLPDKRQFTASDVYNTLKKISEEHLELMGLSVEYARPEWMILTVLPVPPPP 174
Query: 257 PLTGKGV------LLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
V DDLT KL D++K + + + E GA HVI E ++LQFHVAT
Sbjct: 175 VRPSISVDGGTMRSEDDLTFKLGDVLKASASVRKCEQEGAPPHVITEYEQLLQFHVATYM 234
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DND+ G+P+AMQKSG+P+KAI++RLKGKEGR+RGNLMGKRVDFS+RTVIT DPN+ +D+V
Sbjct: 235 DNDISGIPQAMQKSGRPVKAIRSRLKGKEGRLRGNLMGKRVDFSSRTVITGDPNIMLDEV 294
Query: 371 GVPRSIAQNMTFPEIVTPFNM 391
GVP+SIA +T+PE VTP+N+
Sbjct: 295 GVPKSIAMTLTYPERVTPYNI 315
>gi|117553220|gb|ABK35139.1| RNA polymerase II largest subunit [Pertusaria hemisphaerica]
Length = 358
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 138/314 (43%), Positives = 187/314 (59%), Gaps = 29/314 (9%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+L+ SHP + + + RR A ++ LCK KN+CE
Sbjct: 1 FMTKIKKVLEIVCHNCGKVLIDESHPGYAEAT-RFRDPKRRFDA-MWRLCKPKNVCESLR 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
D ++ ++ K HGGCG QP IRR GL LT WK NE Q +K
Sbjct: 59 PTD-----DDEMEKVKGPKHDHGGCGNIQPEIRREGLKLTGTWKGQKGNEENEGQQPEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-------KIPL 258
+T + L ++ +IR+ GL EW + +
Sbjct: 114 QITPQMALNIFRRISA------EDIRKIGLSNDYARPEWMIITVLPVPPPPVRPSISVDG 167
Query: 259 TGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGL 317
TG+G+ DDLT+KL DII+ N + R E+ G+ H++AE ++LQFHVAT DND+ G
Sbjct: 168 TGQGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHLVAEFEQLLQFHVATYMDNDIAGQ 227
Query: 318 PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 377
P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA
Sbjct: 228 PQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIA 287
Query: 378 QNMTFPEIVTPFNM 391
+ +T+PE VT +N+
Sbjct: 288 RTLTYPETVTRYNI 301
>gi|375083052|ref|ZP_09730090.1| DNA-directed RNA polymerase subunit A' [Thermococcus litoralis DSM
5473]
gi|374742288|gb|EHR78688.1| DNA-directed RNA polymerase subunit A' [Thermococcus litoralis DSM
5473]
Length = 905
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 148/391 (37%), Positives = 206/391 (52%), Gaps = 40/391 (10%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTC 69
+ + ++FGILSP EIR+MS E I P+T E G P GGLMD R GVID + RC+TC
Sbjct: 6 KVIGSIEFGILSPQEIRKMSAAE--ITVPDTYSEDGYPIDGGLMDRRLGVIDPNLRCETC 63
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTK 129
N ECPGHFGHI+LA+PV HVGF +IL C C ++ ++ ++ + + K
Sbjct: 64 GANYKECPGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIRLTDE--EIEEYMTKFS 121
Query: 130 GQSRRRQAF------IYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRY 181
R+ IY + + +C G + I + ++ ++G+ R
Sbjct: 122 VNEARKSEIDALVTEIYKKARERMVCPHCGAPQYQIKFERPTIYWEIRRDEEGNEYKHRM 181
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
P+ R L E +K +PL G L+ ++ R + LT
Sbjct: 182 MPSEIRDRL----------EKIPDKDLPLLG----LDPEKS-----------RPEWMVLT 216
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + I L DDLTHKL DII+ N L +N +GA +I + +
Sbjct: 217 V--LPVPPVTVRPSITLESGIRAEDDLTHKLVDIIRINARLKQNIEAGAPQLIIEDLWDL 274
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+HV T DN+ G+P A KSG+PLK + RLKGKEGR R NL GKRV+FSARTVI+P
Sbjct: 275 LQYHVTTYFDNETSGIPPAKHKSGRPLKTLAQRLKGKEGRFRKNLSGKRVNFSARTVISP 334
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DP + I++VGVP +A +T PE VT FN++
Sbjct: 335 DPMISINEVGVPLVVAMELTVPEKVTEFNIE 365
>gi|206601340|gb|ACI16389.1| RNA polymerase II largest subunit [Polyblastia melaspora]
Length = 392
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 184/326 (56%), Gaps = 16/326 (4%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFG I LA PV+H GF+ K K+L VC C K+ S ++R T ++
Sbjct: 1 ECPGHFGAIKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSE-ELR--YAHTVRNGKK 57
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
R I+ + + +N+C+ D + +D ++ K HGGCG QP IR+SGL+L A
Sbjct: 58 RFELIWRMSQKQNVCQADSPEDEDDPMGKD----KSGKIRHGGCGNAQPVIRKSGLELWA 113
Query: 195 EWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE---- 249
++K D +E+ +P + Q LD EW +
Sbjct: 114 QYKPRKGDEEEEAVPEKSQIWPAQALQIFQHLTDETLETLGMNLDFARPEWMILQSLPVP 173
Query: 250 -DSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFH 305
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+H
Sbjct: 174 PPPVRPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYH 233
Query: 306 VATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNL 365
VAT DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL
Sbjct: 234 VATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNL 293
Query: 366 RIDQVGVPRSIAQNMTFPEIVTPFNM 391
+D+VGVPRSIA+ +T+PE VT FN+
Sbjct: 294 SLDEVGVPRSIARTLTYPETVTRFNI 319
>gi|409095098|ref|ZP_11215122.1| DNA-directed RNA polymerase subunit A' [Thermococcus zilligii AN1]
Length = 907
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 149/391 (38%), Positives = 205/391 (52%), Gaps = 40/391 (10%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTC 69
+ + ++FGILSP EIR+MS E I P+T E G P GGLMD R GVID RC+TC
Sbjct: 6 KVIGSIEFGILSPQEIRKMSAAE--ITVPDTYDEDGYPIEGGLMDKRLGVIDPGLRCETC 63
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTK 129
ECPGHFGHI+LA+PV HVGF +++L C C ++ ++ ++ + K +
Sbjct: 64 GAKAGECPGHFGHIELARPVVHVGFAKTILRVLESTCRECGRIKLTDE--EIEGYMKKFE 121
Query: 130 GQSRRRQAF------IYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRY 181
R++A I+ K + +C G + + + L+ ++G+ R
Sbjct: 122 VIGDRKKARDDLIREIHKKAKERMVCPHCGAPQFPLKFERPTVYWELRKDEEGNDYRHRM 181
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
PN R L E + +PL G + N R + LT
Sbjct: 182 MPNEIRDRL----------ERIPDGDLPL---------------LGLHPENSRPEWMVLT 216
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + I L DDLTHKL DII+ NN L N +GA +I + +
Sbjct: 217 V--LPVPPVTMRPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDL 274
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+HV T +N+ G+P A KSG+PLK + RLKGKEGR RGNL GKRV+FSARTVI+P
Sbjct: 275 LQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISP 334
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DP + I++VGVP +IA +T PE VT FN +
Sbjct: 335 DPMISINEVGVPIAIAMELTVPEKVTEFNFE 365
>gi|305663642|ref|YP_003859930.1| DNA-directed RNA polymerase, subunit A' [Ignisphaera aggregans DSM
17230]
gi|304378211|gb|ADM28050.1| DNA-directed RNA polymerase, subunit A' [Ignisphaera aggregans DSM
17230]
Length = 884
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 158/405 (39%), Positives = 209/405 (51%), Gaps = 55/405 (13%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGV 59
MAM + + +K ++FGILSPDEIRRMSV + I PET E G P G +MDPR G
Sbjct: 1 MAMEE-----KVIKGIKFGILSPDEIRRMSVVQ--IVSPETYDEDGTPISGSVMDPRLGA 53
Query: 60 IDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHP 119
I+ C C M CPGHFGHI+LA PV +V +V +LR C C ++ VSPS
Sbjct: 54 IEPGQTCPICGNTMKACPGHFGHIELALPVINVLYVKHIYDLLRATCANCGRIKVSPSEI 113
Query: 120 KVRDVVL-KTKGQ----SRRRQAFIYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKK 172
+ V L K K + ++R FI +C G + I E P + +
Sbjct: 114 EKYMVYLRKLKARYPYLAKRFSEFIKKKAIKVTVCPHCGAKQPKIK---LEKPTTFVEQH 170
Query: 173 QGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPN 232
+ R P RS L+ + NED I L G Y P
Sbjct: 171 EESKEVVRLNPLTVRSRLE-----RIPNED-----IELLG----------------YDPR 204
Query: 233 IRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNES 287
D EW V S I + DDLTHKL DI++ N L + S
Sbjct: 205 ------DSRPEWMVFTVLPVPPTSIRPSILIETGIRSEDDLTHKLVDIVRTNERLREHIS 258
Query: 288 SGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLM 347
+GA +I + ++LQ+HV T DN++PGLP A +SG+PLK + RLKGKEGR RGNL
Sbjct: 259 AGAPQIIIDDLWELLQYHVTTYLDNEVPGLPPAKHRSGRPLKTLAQRLKGKEGRFRGNLS 318
Query: 348 GKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
GKRVD+SARTVI+P+P L I++VGVP +A+ +T PE VT +N++
Sbjct: 319 GKRVDYSARTVISPEPYLSINEVGVPIDVAKILTVPEKVTEWNIE 363
>gi|119514100|gb|ABL75823.1| RNA polymerase II largest subunit [Circinaria contorta]
Length = 357
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 137/316 (43%), Positives = 189/316 (59%), Gaps = 33/316 (10%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+LV S P++ D ++ + RR A I+ LCK K +CE
Sbjct: 1 FMIKIKKVLEIVCHNCGKILVDESDPQMADA-MRYRDPKRRFDA-IWRLCKPKMVCES-- 56
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
M + D +D + + K HGGCG QP +R+ L T WK NE Q +K
Sbjct: 57 -MPVADD--DDMDKSKGPKHDHGGCGNIQPEVRKEPLGFTGTWKAQKGDEENEGQQPEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-------KI 256
P+T + L R+ I++ GL EW ++ +
Sbjct: 114 PITPQMAL--------NIFRHISTDEIKKMGLSNDYARPEWMIISVLPVPPPPVRPSISV 165
Query: 257 PLTGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
TG+G DDLTHKL+D+I+ N + R E+ G+ HV++E +LQ+HVAT DND+
Sbjct: 166 DGTGQGSRGEDDLTHKLSDVIRANGNVRRCETEGSPAHVLSEFEALLQYHVATYMDNDIA 225
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G+P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRS
Sbjct: 226 GIPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRS 285
Query: 376 IAQNMTFPEIVTPFNM 391
IA+ +T+PE VTP+N+
Sbjct: 286 IARTLTYPETVTPYNI 301
>gi|223992753|ref|XP_002286060.1| DNA directed RNA polymerase II, largest subunit [Thalassiosira
pseudonana CCMP1335]
gi|220977375|gb|EED95701.1| DNA directed RNA polymerase II, largest subunit [Thalassiosira
pseudonana CCMP1335]
Length = 1627
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 158/414 (38%), Positives = 222/414 (53%), Gaps = 78/414 (18%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEG----GIKFP------ETMEGGRPKLGGLMDP 55
S A LR +KK+QFGI++P+E+R+ SVT+ G K P ET G+P GG+ DP
Sbjct: 27 SSARLRRIKKLQFGIINPEELRQYSVTQAITVNGRKIPAGVTRYETYMSGQPVYGGVNDP 86
Query: 56 RQGVI-DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLV 114
R G + D+S PG+FGHI+LA+PV+H GF+ T+K LRCVCF+CS++ +
Sbjct: 87 RLGDLHDKSD------------PGYFGHIELARPVYHQGFIDVTLKALRCVCFHCSRITM 134
Query: 115 SPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQG 174
+ K + + + + RR A ++ L + K C+
Sbjct: 135 EDTEYKFQRA-RQIRNRKRRLDA-MHALIRPKKKCDH----------------------- 169
Query: 175 HGGCGRYQPNIRRSGLDLTAEW----KHVNEDSQEKKIPLTG-KGVLLNKKQGHGGCGRY 229
C YQP + GL + E+ + V S +KK ++ K V + KK
Sbjct: 170 ---CNGYQPKYTKVGLHVEIEYADEMERVPGSSGDKKQFMSAQKAVDIFKKM-------R 219
Query: 230 QPNIRRSGLDLTA---EWKHVNEDSQEKKIPLTGKGVLL---------DDLTHKLADIIK 277
++ GLD+T EW V S PL + ++ DDLTH+L +I+K
Sbjct: 220 DDEVKALGLDVTWARPEWMCV---SVMPVPPLHVRPSVVMGGGAQSSEDDLTHQLVNIVK 276
Query: 278 CNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKG 337
N L +G ++ + + LQ +VA +N+M G+P+ Q+SG+PLK + RLK
Sbjct: 277 SNIALKTAIQNGEPNIIVEQFEQALQHNVAAFVNNEMRGMPQITQRSGRPLKTLAQRLKA 336
Query: 338 KEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
KEGRIRGNLMGKRVDFSARTVIT DPNL I QVGVPRS+A N+T P VTPFN+
Sbjct: 337 KEGRIRGNLMGKRVDFSARTVITADPNLGIHQVGVPRSVAMNLTVPTRVTPFNI 390
>gi|83320442|gb|ABC02848.1| RNA polymerase II largest subunit, partial [Zancudomyces culisetae]
Length = 983
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 189/316 (59%), Gaps = 33/316 (10%)
Query: 101 ILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEG---GDEMDI 157
IL CVC+YCSKL + + +V + + S RR ++D+CK + +CE DE +I
Sbjct: 1 ILECVCWYCSKLKIDET--EVAYQMAQKVKNSNRRLKLVWDVCKSRMVCEASVEADEREI 58
Query: 158 N---------KDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHV----NEDSQ 204
N ++ E + K GHGGCG QP R+ GL LTA +K V ED++
Sbjct: 59 NISRADEDLRREEVEGMLGTKRKALGHGGCGHKQPTFRKDGLKLTATFKGVALSGGEDTE 118
Query: 205 EKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVN-----EDSQEKKI 256
K++ + + + KK ++R G++ EW ++ I
Sbjct: 119 GKQVLTVLQVLQVLKKIS-------DTDVRAIGMNPEYARPEWLIISVMPVPPMCVRPSI 171
Query: 257 PLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
+ DDLT+KL DI+K N + E GA H+I E +LQFHVAT +ND+ G
Sbjct: 172 QMDATRHSEDDLTYKLNDILKANARVRSCEVEGAPQHIIDEFETLLQFHVATFINNDISG 231
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
+P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVI+ DPNL IDQVGVP++I
Sbjct: 232 IPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLEIDQVGVPKAI 291
Query: 377 AQNMTFPEIVTPFNMD 392
A+N+T+PE+VTP+N+D
Sbjct: 292 AKNLTYPEVVTPYNID 307
>gi|83320444|gb|ABC02849.1| RNA polymerase II largest subunit, partial [Coemansia reversa]
Length = 1013
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 135/324 (41%), Positives = 190/324 (58%), Gaps = 19/324 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
+IDLAKPV+H+GF+ K K+L CVC+ C +L S P + ++ + + +R ++++
Sbjct: 1 YIDLAKPVYHIGFINKVKKVLECVCWNCGRLKADYSRPDFQRLL--SIPDASQRAKYVWE 58
Query: 142 LCKGKNICEGGDEMDINKDGAED-PNSLQNKKQGHG------GCGRYQPNIRRSGLDLTA 194
CK + CE E D + G + PN + HG GCG QPN R++GL L
Sbjct: 59 YCKKETTCEKPPE-DADMAGPDGVPNDVSMDGGIHGELGTRHGCGARQPNFRKTGLKLYV 117
Query: 195 EWK-HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVN 248
+ K E+ + ++ + VL ++ R + EW V
Sbjct: 118 KNKPAAGEEPTNDRDEVSVERVLQTLRKI---TDRDAETLGIDPYFARPEWMVLHVMPVP 174
Query: 249 EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVAT 308
+ I + DDLT+KL+DI+K N L R GA HVI E + +LQFH A
Sbjct: 175 PMTVRPSIQMDAMRPSEDDLTYKLSDILKANERLQRCIVEGAPAHVINEFVTLLQFHTAA 234
Query: 309 LTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
+N+ G+P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPN+ ID
Sbjct: 235 FMNNEASGMPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNISID 294
Query: 369 QVGVPRSIAQNMTFPEIVTPFNMD 392
QVGVPRSIA+N+T+PE VTP+N+D
Sbjct: 295 QVGVPRSIARNLTYPETVTPYNID 318
>gi|146423609|ref|XP_001487731.1| hypothetical protein PGUG_01108 [Meyerozyma guilliermondii ATCC
6260]
gi|146388852|gb|EDK37010.1| hypothetical protein PGUG_01108 [Meyerozyma guilliermondii ATCC
6260]
Length = 329
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 139/328 (42%), Positives = 189/328 (57%), Gaps = 22/328 (6%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+LSP+E+R +SV + I++PETM+ RP+ GGL DPR G IDR+
Sbjct: 8 SSAPLRSVKEVQFGLLSPEEVRAISVAK--IEYPETMDQATKRPREGGLNDPRLGSIDRN 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC +M ECPGHFGHI+LAKPVFH+GF+ K K+ CVC +C KLL+ S+P +
Sbjct: 66 FKCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDESNPAMAQ 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + + +R A +++LCKGK ICE D+ +D E + K+ GGCG QP
Sbjct: 126 AI-RIRDPKKRFNA-VWNLCKGKMICEA----DVLQDDGE---GNEPKRTSRGGCGHTQP 176
Query: 184 NIRRSGLDLTAEW---KHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPN---IRRS 236
+R+ GL L W K+ +E Q ++ LT +L + K C R N R
Sbjct: 177 VVRKDGLKLWGTWKQNKNYDETEQPERRLLTPSEILNVFKHINSEDCVRLGFNEDYARPE 236
Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
+ +T T +G DDLT KLAD+IK N + R E G+ HVI+
Sbjct: 237 WMLITVLPVPPPPVRPSIAFNDTARGE--DDLTFKLADVIKANINVQRLELDGSPQHVIS 294
Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKS 324
E +LQFHVAT DND+ G P K+
Sbjct: 295 EFEALLQFHVATYMDNDIAGQPAGASKN 322
>gi|240103982|ref|YP_002960291.1| DNA-directed RNA polymerase subunit A' [Thermococcus gammatolerans
EJ3]
gi|239911536|gb|ACS34427.1| DNA-directed RNA polymerase subunit A' (rpoA1) [Thermococcus
gammatolerans EJ3]
Length = 905
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 205/389 (52%), Gaps = 36/389 (9%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTC 69
+ + ++FGILSP EIR+MS E I P+T + G P GGLMD R GVID RC+TC
Sbjct: 6 KVIGSIEFGILSPQEIRKMSAAE--ITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETC 63
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVS----PSHPKVRDVV 125
ECPGHFGHI+LA+PV HVGF ++L C C ++ ++ + K +V+
Sbjct: 64 GARAGECPGHFGHIELARPVVHVGFAKTIQRVLESTCRECGRIKLTDEEIEEYMKKFEVI 123
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
K R I+ K + +C G + I + L+ ++G+ R P
Sbjct: 124 GDRKKDKDRLIKEIHKKAKERMVCPHCGAPQFPIKFERPTIYYELRRDEEGNEYKHRMMP 183
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAE 243
+ R L E +K +PL G L+ ++ R + LT
Sbjct: 184 SEIRDRL----------ERIPDKDLPLLG----LHPEKS-----------RPEWMILTV- 217
Query: 244 WKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
V + I L DDLTHKL DII+ NN L N +GA +I + +LQ
Sbjct: 218 -LPVPPVTMRPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQ 276
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
+HV T +N+ G+P A KSG+PLK + RLKGKEGR RGNL GKRV+FSARTVI+PDP
Sbjct: 277 YHVTTYINNETSGIPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDP 336
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+ I++VGVP +IA +T PE VT FN +
Sbjct: 337 MISINEVGVPLAIAMELTVPEKVTEFNFE 365
>gi|83320426|gb|ABC02840.1| RNA polymerase II largest subunit, partial [Hyaloraphidium
curvatum]
Length = 1002
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 147/321 (45%), Positives = 194/321 (60%), Gaps = 24/321 (7%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PVFHV + K KIL CVCF C KL V S+P L K Q R+ + ++D
Sbjct: 1 HIELARPVFHVSLIGKVKKILECVCFECGKLKVDASNPLFAQKRL-IKDQKRKFKE-VWD 58
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
L KG +CEGGDE + ++ GA N KK+ HGGCG QP IR+ GL L A +
Sbjct: 59 LAKGIMVCEGGDEEE-DEFGA---NGDAPKKKSHGGCGAAQPKIRKDGLKLLAVTTKESG 114
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVN-----EDSQE 253
Q++K+ K + + C R GL EW V
Sbjct: 115 PRQDRKVITPSKVREVFRVISDQDC-------RDMGLSPEFARPEWMLVTVLPVPPPQVR 167
Query: 254 KKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
+ + G + DDLT KL DI+K N L R+++ + H+ E ++LQ+HVAT+
Sbjct: 168 PSVSMDGASGGMRSQDDLTFKLGDILKANIALKRHDAENSPAHITREFEEILQYHVATMV 227
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DN++ G+P+AMQKSG+P+K+I+ RLKGKEGRIRGNLMGKRVDFS+RTVIT DPN+ ID+V
Sbjct: 228 DNNISGMPQAMQKSGRPIKSIRQRLKGKEGRIRGNLMGKRVDFSSRTVITGDPNISIDEV 287
Query: 371 GVPRSIAQNMTFPEIVTPFNM 391
GVPRSIA+ +TFPEIVTP N+
Sbjct: 288 GVPRSIARTLTFPEIVTPHNV 308
>gi|223478217|ref|YP_002582841.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. AM4]
gi|214033443|gb|EEB74270.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. AM4]
Length = 905
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 205/389 (52%), Gaps = 36/389 (9%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTC 69
+ + ++FGILSP EIR+MS E I P+T + G P GGLMD R GVID RC+TC
Sbjct: 6 KVIGSIEFGILSPQEIRKMSAAE--ITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETC 63
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVS----PSHPKVRDVV 125
ECPGHFGHI+LA+PV HVGF ++L C C ++ ++ + K +V+
Sbjct: 64 GARAGECPGHFGHIELARPVVHVGFAKTIQRVLESTCRECGRIKLTDEEIEEYMKKFEVI 123
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
K R I+ K + +C G + I + L+ ++G+ R P
Sbjct: 124 GDRKKDKDRLIKEIHKKAKERMVCPHCGAPQFPIKFERPTIYYELRRDEEGNEYKHRMMP 183
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAE 243
+ R L E +K +PL G L+ ++ R + LT
Sbjct: 184 SEIRDRL----------ERIPDKDLPLLG----LHPEKS-----------RPEWMILTV- 217
Query: 244 WKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
V + I L DDLTHKL DII+ NN L N +GA +I + +LQ
Sbjct: 218 -LPVPPVTMRPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQ 276
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
+HV T +N+ G+P A KSG+PLK + RLKGKEGR RGNL GKRV+FSARTVI+PDP
Sbjct: 277 YHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDP 336
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+ I++VGVP +IA +T PE VT FN +
Sbjct: 337 MISINEVGVPLAIAMELTVPEKVTEFNFE 365
>gi|119514056|gb|ABL75801.1| RNA polymerase II largest subunit [Protoblastenia calva]
Length = 358
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 141/315 (44%), Positives = 186/315 (59%), Gaps = 31/315 (9%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+P D L+ + RR A ++ LCK K ICE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESNPAFADA-LRYRDPKRRFDA-VWRLCKPKMICETTA 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
D + ++DP + K HGGCG QP IRR GL L WK NE Q +K
Sbjct: 59 TSDEDAP-SDDP---KKPKHDHGGCGNIQPEIRREGLRLNGTWKAQKGDEENESQQPEKK 114
Query: 209 PLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPL 258
P+ + L R+ +I+R GL EW ++ I +
Sbjct: 115 PIAPQMAL--------NIFRHISTDDIKRMGLSNDYARPEWMIISVLPVPPPPVRPSIAV 166
Query: 259 TGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
G + DD T+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+ G
Sbjct: 167 DGGNGMRGEDDSTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAG 226
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 227 QPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 286
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP+N+
Sbjct: 287 AKTLTYPETVTPYNI 301
>gi|113957452|gb|ABI49113.1| RNA polymerase II largest subunit [Pseudocyphellaria anomala]
Length = 997
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 139/317 (43%), Positives = 186/317 (58%), Gaps = 34/317 (10%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICE-G 151
GF+TK K+L VC C K+LV S+ D L+ + RR A I+ LCK K +CE
Sbjct: 1 GFMTKIKKLLETVCHNCGKILVDESNSAFADA-LRYRDPKRRFDA-IWRLCKTKMVCETA 58
Query: 152 GDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEK 206
D N D +++P K HGGCG QP +RR G+ L WK NE Q +
Sbjct: 59 AAAEDDNMDKSKEP------KHDHGGCGNVQPEVRREGMKLNGTWKPQKGDEENEGQQPE 112
Query: 207 KIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----KI 256
K P+T + L R+ I++ GL EW + I
Sbjct: 113 KKPITPQMAL--------NIFRHISTEEIQKIGLSNDYARPEWMIITVLPVPPPPVRPSI 164
Query: 257 PLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM 314
+ G + DDLT+KL DII+ + + E+ G+ HV+A+ ++LQFHVAT DND+
Sbjct: 165 SVDGGNGMRGEDDLTYKLGDIIRASGNVRTCEAEGSPAHVVADFEQLLQFHVATYMDNDI 224
Query: 315 PGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPR
Sbjct: 225 AGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPR 284
Query: 375 SIAQNMTFPEIVTPFNM 391
SIA+ +T+PE VTP+N+
Sbjct: 285 SIARTLTYPETVTPYNI 301
>gi|123979350|gb|ABM81500.1| RNA polymerase II largest subunit [Pannaria sp. AFTOL 309]
Length = 364
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 142/317 (44%), Positives = 185/317 (58%), Gaps = 36/317 (11%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
+TK K+L VC C K+L S+P D L+ + RR A I+ LCK K CE
Sbjct: 1 LMTKIKKLLETVCHNCGKILGDESNPAFADA-LRYRDPKRRFDA-IWRLCKPKMTCE--- 55
Query: 154 EMDINKDGAEDPNSLQNK--KQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEK 206
ED N+ ++K K HGGCG QP +RR GL LT WK NE Q +
Sbjct: 56 ----TTAATEDDNNEKSKEPKHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPE 111
Query: 207 KIPLTGKGVLLNKKQGHGGCGRYQPN--IRRSGLD---LTAEWKHVNEDSQEK-----KI 256
K P+T + L R+ N I++ GL EW + I
Sbjct: 112 KKPITPQMAL--------NIFRHISNEEIKKMGLSNDYARPEWMLITVLPVPPPPVRPSI 163
Query: 257 PLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM 314
+ G + DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+
Sbjct: 164 SVDGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVTEFEQLLQFHVATYMDNDI 223
Query: 315 PGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPR
Sbjct: 224 AGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPR 283
Query: 375 SIAQNMTFPEIVTPFNM 391
SIA+ +T+PE VTP+N+
Sbjct: 284 SIARTLTYPETVTPYNI 300
>gi|394998729|gb|AFN44283.1| RNA polymerase II largest subunit, partial [Brigantiaea cf.
leucoxantha Gaya 71]
Length = 355
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/310 (43%), Positives = 182/310 (58%), Gaps = 22/310 (7%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+LV S+P D + ++R ++ LCK K +CE
Sbjct: 1 FLGKIKKLLETVCHNCGKILVDESNPAFVDA--QRIRDPKKRFDAVWRLCKPKMLCETS- 57
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
M D +P L+ K HGGCG QP +RR L LT WK D + + P K
Sbjct: 58 -MPAEDD---NPEKLKEPKHDHGGCGNIQPEVRREALKLTGTWKAQKGDDENEGQPAEKK 113
Query: 214 GVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGV 263
+ Q R+ +IR+ GL EW + I + G
Sbjct: 114 PIT---PQMALNVFRHISLEDIRKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGANG 170
Query: 264 LL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
+ DDLT+KL DII+ N + R E+ GA H+++E ++LQFHVAT DND+ GLP+A+
Sbjct: 171 MRGEDDLTYKLGDIIRANGNVRRCENDGAPAHIVSEFEQLLQFHVATYMDNDVAGLPQAL 230
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T
Sbjct: 231 QKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLT 290
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 291 YPETVTPYNI 300
>gi|291170448|gb|ADD82433.1| RNA polymerase II largest subunit [Dothideomycetes sp. AN13]
Length = 359
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/316 (43%), Positives = 188/316 (59%), Gaps = 27/316 (8%)
Query: 92 VGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEG 151
VGF+ KT K+L VC C K+L S+P + L+ + RR +A ++ +CK K ICE
Sbjct: 1 VGFINKTKKLLETVCHNCGKILSDESNPAFVEA-LRFRDPKRRFEA-VWRVCKTKTICES 58
Query: 152 GDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEK 206
D + D + P + KK+ HGGCG QP IR+ GL L WK E Q +
Sbjct: 59 -DPLPDEFDASAPPKDV--KKRSHGGCGNIQPEIRKEGLSLVGTWKLPKGEDDEEGRQPE 115
Query: 207 KIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNE-----DSQEKKIPL 258
K P+T + + LN + +IR+ GL EW + I +
Sbjct: 116 KRPITPQ-MALNVFRNIS-----TEDIRKMGLSNDYARPEWMIITNLPVPPPPVRPSISV 169
Query: 259 TGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
G G + DDLT+KL DII+ N + R G+ HV+ E +LQ+HVAT DN++
Sbjct: 170 DGTGQGMRGEDDLTYKLGDIIRANANVRRCHQEGSPQHVVNEYETLLQYHVATYMDNEIA 229
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G+P+A+QKSG+PLK I++RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRS
Sbjct: 230 GVPQALQKSGRPLKTIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRS 289
Query: 376 IAQNMTFPEIVTPFNM 391
IA+ +T+PE VTP+N+
Sbjct: 290 IARILTYPETVTPYNI 305
>gi|288931146|ref|YP_003435206.1| DNA-directed RNA polymerase subunit A' [Ferroglobus placidus DSM
10642]
gi|288893394|gb|ADC64931.1| DNA-directed RNA polymerase subunit A' [Ferroglobus placidus DSM
10642]
Length = 870
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 146/391 (37%), Positives = 207/391 (52%), Gaps = 53/391 (13%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTCAG 71
+ ++F +LSP EIRRMSV + I PET + G P GLMDPR GV+D RC+TC G
Sbjct: 6 ISAIKFEVLSPQEIRRMSVAK--IFTPETYSDDGYPIESGLMDPRLGVVDPGLRCRTCGG 63
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQ 131
ECPGHFGHI+LA PV HVG+ ++L C C ++L+ +
Sbjct: 64 KAGECPGHFGHIELAAPVIHVGYAKLIARLLNGTCRECGRILL----------------K 107
Query: 132 SRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLD 191
RR +I + K K + + DE + K+ ++ KK H G + + +
Sbjct: 108 DERRDKYIAQIEKLKELGQNYDE--VVKEVFRVTKAV--KKCPHCGADQIEVKFEKPTFY 163
Query: 192 LTAEWKHVNEDSQEK--KIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EW-- 244
+ K +D +E+ KIP ++ G+D A EW
Sbjct: 164 YEGDHKLTPKDVRERLEKIP--------------------DEDLPAFGIDPKACRPEWFV 203
Query: 245 ---KHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + I L DDLTHKL DII+ N + N+ +GA ++ + ++
Sbjct: 204 LTVLPVPPVTVRPSIILETGQRSEDDLTHKLVDIIRINQRFLENKEAGAPQLILEDLWEL 263
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+HV T DN++ G+P A +SG+PLK + RLKGKEGR RG+L GKRV+FSARTVI+P
Sbjct: 264 LQYHVTTYLDNEVSGIPPARHRSGRPLKTLAQRLKGKEGRFRGSLSGKRVNFSARTVISP 323
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPNL I++VGVP+ IA+ +T P VTP N++
Sbjct: 324 DPNLSINEVGVPKVIAEELTVPIYVTPNNIE 354
>gi|401016|sp|P31813.1|RPOA1_THECE RecName: Full=DNA-directed RNA polymerase subunit A'
gi|48141|emb|CAA47723.1| Subunit A' of DNA-dependent RNA polymerase [Thermococcus celer]
Length = 905
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 148/391 (37%), Positives = 206/391 (52%), Gaps = 40/391 (10%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTC 69
+ + + FGILSP EIR+MS E I P+T E G P GGLMD R GVID RC+TC
Sbjct: 6 KVIGSIDFGILSPQEIRKMSAAE--ITVPDTYDEDGYPIEGGLMDKRLGVIDPGLRCETC 63
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTK 129
ECPGHFGH++LA+PV HVGF ++L C C ++ ++ ++ + K +
Sbjct: 64 GARAGECPGHFGHVELARPVIHVGFAKTIHRVLESTCRECGRIKLTDE--EIEEYFHKFE 121
Query: 130 GQSRRRQA------FIYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRY 181
R++A I+ K + +C G + I + L+ ++G+ R
Sbjct: 122 VTGNRKKAKDRLIKEIHKKAKERMVCPHCGSPQFPIKFERPTVYWELRKDEEGNEYKHRM 181
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
P+ R L E ++ +PL G L+ ++ R + LT
Sbjct: 182 MPSEVRDRL----------EKIPDRDLPLIG----LDAEKA-----------RPEWMVLT 216
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + I L DDLTHKL DII+ NN L N +GA +I + +
Sbjct: 217 V--LPVPPVTMRPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDL 274
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+HV T +N+ G+P A KSG+PLK + RLKGKEGR RGNL GKRV+FSARTVI+P
Sbjct: 275 LQYHVTTYINNETSGIPPAKHKSGRPLKTLSQRLKGKEGRFRGNLSGKRVNFSARTVISP 334
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DP + I++VGVP +IA +T PE VT FN +
Sbjct: 335 DPMISINEVGVPMAIAMELTVPEKVTEFNFE 365
>gi|119514029|gb|ABL75787.1| RNA polymerase II largest subunit [Lecanora contractula]
Length = 360
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 141/317 (44%), Positives = 184/317 (58%), Gaps = 33/317 (10%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK KIL VC C K+LV S+P + L+ + RR A ++ LCK K ICE
Sbjct: 1 FMTKIKKILETVCHNCGKILVDESNPAFTEA-LRYRDPKRRFDA-VWRLCKPKMICE--- 55
Query: 154 EMDINKDGAEDPNSLQNK--KQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEK 206
+ D E N+ ++K K HGGCG QP IRR GL L +K E Q +
Sbjct: 56 -QTVAADDEEPNNASKSKEPKHDHGGCGNIQPEIRREGLKLNGTYKPQKGDEETEGQQPE 114
Query: 207 KIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGK 261
K P++ + L R+ +IRR GL EW +
Sbjct: 115 KKPISAQMAL--------NIFRHISTDDIRRMGLSNDYARPEWMIITVLPVPPPPVRPSI 166
Query: 262 GVL-------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM 314
V DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+
Sbjct: 167 SVDGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDI 226
Query: 315 PGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPR
Sbjct: 227 AGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPR 286
Query: 375 SIAQNMTFPEIVTPFNM 391
SIA+ +T+PE VTP+N+
Sbjct: 287 SIARTLTYPETVTPYNI 303
>gi|57641017|ref|YP_183495.1| DNA-directed RNA polymerase subunit A' [Thermococcus kodakarensis
KOD1]
gi|57159341|dbj|BAD85271.1| DNA-directed RNA polymerase, subunit A' [Thermococcus kodakarensis
KOD1]
Length = 906
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 148/389 (38%), Positives = 206/389 (52%), Gaps = 36/389 (9%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTC 69
+ + ++FGILSP EIR+MS E I P+T + G P GGLMD R GVID RC+TC
Sbjct: 6 KVIGSIEFGILSPQEIRKMSAAE--ITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETC 63
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVS----PSHPKVRDVV 125
ECPGHFGHI+LA+PV HVGF ++L C C ++ ++ + + +V+
Sbjct: 64 GARAGECPGHFGHIELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYMQKFEVM 123
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
KG + I+ K + +C G + I + L+ ++G+ R P
Sbjct: 124 GDRKGAVDKLIKEIHKKAKERMVCPHCGAPQFPIKFERPTIYWELRKDEEGNEYKHRMMP 183
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAE 243
+ R L E +K +PL G L+ ++ R + LT
Sbjct: 184 SEVRDRL----------EKIPDKDLPLLG----LHPEKS-----------RPEWMVLTV- 217
Query: 244 WKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
V + I L DDLTHKL DII+ NN L N +GA +I + +LQ
Sbjct: 218 -LPVPPVTMRPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQ 276
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
+HV T +N+ G+P A KSG+PLK + RLKGKEGR RGNL GKRV+FSARTVI+PDP
Sbjct: 277 YHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDP 336
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+ I++VGVP ++A +T PE VT FN +
Sbjct: 337 MISINEVGVPLAVAMELTVPEKVTEFNYE 365
>gi|119514104|gb|ABL75825.1| RNA polymerase II largest subunit [Peltigera sp. AFTOL 1838]
Length = 361
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/310 (44%), Positives = 189/310 (60%), Gaps = 29/310 (9%)
Query: 96 TKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEM 155
TK K+L VC C K+L+ S+ ++ L+ + RR A I+ CK K +C D +
Sbjct: 1 TKIXKLLETVCHNCGKILLDESNADFKNA-LRFRDPKRRFDA-IWKACKPKMVC---DML 55
Query: 156 DINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK--HVNEDSQEKKIPLTGK 213
+ D P+ Q K HGGCG QP IR+ GL LT WK +E+SQ++K P+T +
Sbjct: 56 VLADDDV--PDKSQEPKHDHGGCGNRQPEIRKEGLKLTGTWKARKDDEESQDEKRPITPQ 113
Query: 214 GVLLNKKQGHGGCGRY--QPNIRRSGLDLTA---EWKHVNEDSQEK-----KIPLTGKGV 263
L R+ +I++ GL++ EW + I + G
Sbjct: 114 NAL--------NIFRHISSEDIQKMGLNVDYARPEWMIITVLPVPPPPVRPSIAVDGGNG 165
Query: 264 LL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
+ DDLT+KL DII+ N + E+ G+ HV+AE ++LQFHVAT DND+ G P+A+
Sbjct: 166 MRGEDDLTYKLGDIIRANGNVRTCEAEGSPAHVVAEFEQLLQFHVATYMDNDIAGQPQAL 225
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T
Sbjct: 226 QKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLT 285
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 286 YPETVTPYNI 295
>gi|14520831|ref|NP_126306.1| DNA-directed RNA polymerase subunit A' [Pyrococcus abyssi GE5]
gi|5458047|emb|CAB49537.1| rpoA1 DNA-directed RNA polymerase, subunit A' [Pyrococcus abyssi
GE5]
gi|380741373|tpe|CCE70007.1| TPA: DNA-directed RNA polymerase subunit alpha [Pyrococcus abyssi
GE5]
Length = 907
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 147/391 (37%), Positives = 203/391 (51%), Gaps = 40/391 (10%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTC 69
+ + ++FGILSP EIR+MS E + P+T + G P GG+MD R GVID RC+TC
Sbjct: 6 KVIGSIEFGILSPQEIRKMSAVE--VTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETC 63
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTK 129
ECPGHFGHI+LA+PV HVGF +IL C C ++ ++ ++ + + K +
Sbjct: 64 GAKAGECPGHFGHIELARPVIHVGFAKTIHRILESTCRECGRIKLTDE--EIEEYMKKLE 121
Query: 130 GQSRRRQAF------IYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRY 181
RR I+ + + +C G + I + L+ +QG+ R
Sbjct: 122 LAKNRRSEVNKILKEIHKKARERMVCPHCGAPQYPIKFEKPTIYWELRKDEQGNEYKHRM 181
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
P R L E +K +PL G + R + LT
Sbjct: 182 MPTEIRDRL----------EKIPDKDLPL---------------LGLHPEKSRPEWMVLT 216
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + I L DDLTHKL DII+ NN L +N +GA +I + +
Sbjct: 217 V--LPVPPVTARPSITLETGIRAEDDLTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDL 274
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+HV T +N+ G+P A KSG+PLK + RLKGKEGR RGNL GKRV+FSARTVI+P
Sbjct: 275 LQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISP 334
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DP + I++VGVP IA +T PE VT FN++
Sbjct: 335 DPMISINEVGVPIQIAMELTVPEKVTEFNIE 365
>gi|327401232|ref|YP_004342071.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus veneficus
SNP6]
gi|327316740|gb|AEA47356.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus veneficus
SNP6]
Length = 871
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 145/383 (37%), Positives = 206/383 (53%), Gaps = 37/383 (9%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTCAG 71
+ ++F +LSP EIRRMSV + I PET + G P GLMDPR GVID RC+TC G
Sbjct: 6 ISGIRFEVLSPQEIRRMSVAK--IITPETYDDDGFPIEAGLMDPRLGVIDPGLRCRTCGG 63
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQ 131
ECPGHFGHI+LA PV HVG+ K+L C C ++L+ +
Sbjct: 64 KAGECPGHFGHIELAAPVIHVGYAKLIAKLLNATCRECGRILL----------------K 107
Query: 132 SRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLD 191
+R FI ++ + +++ G D D+ K+ ++ KK H G + + +
Sbjct: 108 DDKRDKFIEEIERKRDL--GQDYEDVVKEVFRITKAV--KKCPHCGMDQIEIKFEKPTFF 163
Query: 192 LTAEWKHVNEDSQEK--KIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 249
E + +D +E+ KIP G +R + LT V
Sbjct: 164 YEGEHRLTPKDIRERLEKIP----------DDDLPAFGMDPKAVRPEWMVLTV--LPVPP 211
Query: 250 DSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
+ I L DDLTHKL DII+ N + N+ +GA ++ + ++LQ+HV T
Sbjct: 212 VTVRPSIILETGQRSEDDLTHKLVDIIRINQRFMENKEAGAPQLILEDLWELLQYHVTTY 271
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DN++ G+P A +SG+PLK + RLKGKEGR RG+L GKRV+FSARTVI+PDPNL I++
Sbjct: 272 LDNEVSGIPPARHRSGRPLKTLAQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSINE 331
Query: 370 VGVPRSIAQNMTFPEIVTPFNMD 392
VGVP+ IA+ +T P VT N++
Sbjct: 332 VGVPKVIAEELTVPFYVTEKNIE 354
>gi|119514096|gb|ABL75821.1| RNA polymerase II largest subunit [Aspicilia cinerea]
Length = 989
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 135/311 (43%), Positives = 188/311 (60%), Gaps = 23/311 (7%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S P++ D ++ + RR A I+ LCK K +CE
Sbjct: 1 FMTKIKKVLEIVCHNCGKILVDESDPQMADA-MRYRDPKRRFDA-IWRLCKPKMVCES-- 56
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
M + D D + + K HGGCG QP +R+ L T WK NE Q +K
Sbjct: 57 -MPVVDDDDMDKS--KGPKHDHGGCGNIQPEVRKEPLGFTGTWKAQKGDEENEGQQPEKK 113
Query: 209 PLTGKGVL-------LNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 261
P+T + L +++ + G Y R + ++ + TG+
Sbjct: 114 PITPQMALNIFRHISIDEIKKMGLSNDYA---RPEWMIISVLPVPPPPVRPSISVDGTGQ 170
Query: 262 GVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRA 320
G DDLTHKL+D+I+ N + R E+ G+ HV++E +LQ+HVAT DND+ G+P+A
Sbjct: 171 GSRGEDDLTHKLSDVIRANGNVRRCETEGSPAHVVSEFEALLQYHVATYMDNDIAGIPQA 230
Query: 321 MQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNM 380
+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +
Sbjct: 231 LQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 290
Query: 381 TFPEIVTPFNM 391
T+PE VTP+N+
Sbjct: 291 TYPETVTPYNI 301
>gi|119514072|gb|ABL75809.1| RNA polymerase II largest subunit [Lepraria lobificans]
Length = 364
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 138/320 (43%), Positives = 187/320 (58%), Gaps = 33/320 (10%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K KIL VC C KLL +P + K + RR +A ++ LC+ K ICE +
Sbjct: 1 FIGKVKKILESVCHNCGKLLEDDRNPAFAQAI-KLRDPKRRFEA-VHRLCRIKKICESDE 58
Query: 154 EMDINKDG-AEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHV--------NEDSQ 204
D D +DP +L+ K++GHGGCG QP IR+ L L WK + ++
Sbjct: 59 PSDSGNDAFNDDPKALKQKQKGHGGCGNIQPEIRKEQLRLWGTWKVAKGEGDDEGDRNAT 118
Query: 205 EKKI--PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWK-----HVNEDSQEK 254
EK+I P V N + ++ R GL++ EW V +
Sbjct: 119 EKRIISPQDALNVFRNIS---------EEDMIRLGLNVDYARPEWMILTVLPVPPPAVRP 169
Query: 255 KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
I + G + DDLT+KL+DII+ N+ + R E G+ HV+ E +LQ+HVAT D
Sbjct: 170 SISVDGTSQGMRSEDDLTYKLSDIIRANSNMRRCEQEGSPQHVVDEFFSLLQYHVATYMD 229
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
ND+ GLP+A+QKSG+P+KAI+ARLK KEGR+RGNLMGKRVDFSARTVIT DPNL +D+VG
Sbjct: 230 NDIAGLPKAIQKSGRPVKAIRARLKSKEGRLRGNLMGKRVDFSARTVITGDPNLDLDEVG 289
Query: 372 VPRSIAQNMTFPEIVTPFNM 391
VPRSIA+ +TFPE V +N+
Sbjct: 290 VPRSIARTLTFPETVNAYNI 309
>gi|332157774|ref|YP_004423053.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. NA2]
gi|331033237|gb|AEC51049.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. NA2]
Length = 906
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 148/391 (37%), Positives = 206/391 (52%), Gaps = 40/391 (10%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTC 69
+ + ++FGILSP EIR+MS E + P+T + G P GG+MD R GVID RC+TC
Sbjct: 6 KVIGSIEFGILSPQEIRKMSAVE--VTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETC 63
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTK 129
ECPGHFGHI+LA+PV HVGF +IL C C ++ ++ ++ + + K +
Sbjct: 64 GAKAGECPGHFGHIELARPVIHVGFAKTIHRILESTCRECGRIKLTDE--EIEEYMKKLE 121
Query: 130 GQSRRRQAF------IYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRY 181
RR I+ + + +C G + I + L+ +QG+ R
Sbjct: 122 LAKNRRSEVNKILKEIHKKARERMVCPHCGAPQYPIKFEKPTIYWELRKDEQGNEYKHRM 181
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
P R L E +K +PL G L+ ++ R + LT
Sbjct: 182 MPTEIRDRL----------EKIPDKDLPLLG----LHPEKS-----------RPEWMVLT 216
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + I L DDLTHKL DII+ NN L +N +GA +I + +
Sbjct: 217 V--LPVPPVTARPSITLETGIRAEDDLTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDL 274
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+HV T +N+ G+P A KSG+PLK + RLKGKEGR RGNL GKRV+FSARTVI+P
Sbjct: 275 LQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISP 334
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DP + I++VGVP IA +T PE VT FN++
Sbjct: 335 DPMISINEVGVPIEIAMELTVPEKVTEFNIE 365
>gi|119514058|gb|ABL75802.1| RNA polymerase II largest subunit [Psora rubiformis]
Length = 973
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/315 (44%), Positives = 183/315 (58%), Gaps = 31/315 (9%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+ D L+ + RR A ++ LCK K +CE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESNAAFADA-LRYRDPKRRFDA-VWRLCKPKMVCETTA 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
+D D D + K HGGCG QP IRR GL L WK NE Q +K
Sbjct: 59 TLD--DDAPSD--DTKKPKHDHGGCGNIQPEIRREGLRLNGTWKVQKGDEENESQQPEKK 114
Query: 209 PLTGKGVLLNKKQGHGGCGRYQP--NIRRSGLD---LTAEWKHVNEDSQEK-----KIPL 258
P+T + L R+ +I+ GL EW + I +
Sbjct: 115 PITPQMAL--------NIFRHISVDDIKLMGLSNDYARPEWMIITVLPVPPPPVRPSIAV 166
Query: 259 TGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
G + DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+ G
Sbjct: 167 DGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVDEFEQLLQFHVATYMDNDIAG 226
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVD+SARTVIT DPNL +D+VGVPRSI
Sbjct: 227 QPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDYSARTVITGDPNLSLDEVGVPRSI 286
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP+N+
Sbjct: 287 AKTLTYPETVTPYNI 301
>gi|119514035|gb|ABL75790.1| RNA polymerase II largest subunit [Lecidea silacea]
Length = 357
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 141/316 (44%), Positives = 186/316 (58%), Gaps = 32/316 (10%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICE--G 151
F+TK K+L VC C K+LV S P+ RD L+ + +R A I+ LCK K CE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESDPRFRDA-LRFRDPKKRFDA-IWRLCKPKKKCETTA 58
Query: 152 GDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEK 206
G E D + D ++P K HGGCG P +RR GL L WK NE Q +
Sbjct: 59 GQEDD-SMDKTKEP------KHDHGGCGNTHPEVRREGLKLIGTWKAQRGEEENEGQQPE 111
Query: 207 KIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPL 258
K P+T + + LN +I+ GL EW + I +
Sbjct: 112 KKPITPQ-MALNIFHHIA-----TEDIKTMGLSNDYARPEWMIITVLPVPPPPVRPSISV 165
Query: 259 TGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
G + DDLT+KL DII+ N + R E+ G+ H++ E +LQFHVAT DND+ G
Sbjct: 166 DGGNGMRGEDDLTYKLGDIIRANGNVQRCETEGSPAHIVTEFEHLLQFHVATYMDNDIAG 225
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 226 QPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 285
Query: 377 AQNMTFPEIVTPFNMD 392
A+ +T+PE VTP+N++
Sbjct: 286 ARTLTYPETVTPYNIE 301
>gi|119514051|gb|ABL75798.1| RNA polymerase II largest subunit [Porpidia albocaerulescens]
Length = 355
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 141/317 (44%), Positives = 186/317 (58%), Gaps = 34/317 (10%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICE-GG 152
F+TK K+L VC C K+LV S RD L+ + RR A ++ LCK K CE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESTLGFRDA-LRFRDPKRRFDA-VWRLCKPKMRCETSA 58
Query: 153 DEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKK 207
E D N + A++P K HGGCG QP +RR GL L WK NE Q +K
Sbjct: 59 GEDDDNMEKAKEP------KHDHGGCGNIQPEVRREGLKLIGTWKVQKGDEENEGQQPEK 112
Query: 208 IPLTGKGVLLNKKQGHGGCGRYQP--NIRRSGLD---LTAEWKHVNEDSQEK-----KIP 257
P+T + L R+ +I+ GL EW + I
Sbjct: 113 KPITPQMAL--------NIFRHISIEDIKTMGLSNDYARPEWMIITVLPVPPPPVRPSIS 164
Query: 258 LTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+ G + DDLT+KL DII+ N + R E+ G+ H+++E +LQFHVAT DND+
Sbjct: 165 VDGGNGMRGEDDLTYKLGDIIRANGNVQRCETEGSPAHIVSEFEHLLQFHVATYMDNDIA 224
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRS
Sbjct: 225 GQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRS 284
Query: 376 IAQNMTFPEIVTPFNMD 392
IA+ +T+PE VTP+N++
Sbjct: 285 IARTLTYPETVTPYNIE 301
>gi|14591328|ref|NP_143406.1| DNA-directed RNA polymerase subunit A' [Pyrococcus horikoshii OT3]
gi|3257973|dbj|BAA30656.1| 907aa long hypothetical DNA-directed RNA polymerase subunit A'
[Pyrococcus horikoshii OT3]
Length = 907
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 147/391 (37%), Positives = 203/391 (51%), Gaps = 40/391 (10%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTC 69
+ + ++FGILSP EIR+MS E + P+T + G P GG+MD R GVID RC+TC
Sbjct: 6 KVIGSIEFGILSPQEIRKMSAVE--VTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETC 63
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTK 129
ECPGHFGHI+LA+PV HVGF +IL C C ++ ++ ++ + + K +
Sbjct: 64 GAKAGECPGHFGHIELARPVIHVGFAKTIHRILESTCRECGRIKLTDE--EIEEYMKKLE 121
Query: 130 GQSRRRQAF------IYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRY 181
RR I+ + + +C G + I + L+ +QG+ R
Sbjct: 122 LAKNRRSEVNKILKEIHKKARERMVCPHCGAPQYPIKFEKPTIYWELRKDEQGNEYKHRM 181
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
P R L E +K +PL G + R + LT
Sbjct: 182 MPTEIRDRL----------EKIPDKDLPL---------------LGLHPEKSRPEWMVLT 216
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + I L DDLTHKL DII+ NN L +N +GA +I + +
Sbjct: 217 V--LPVPPVTVRPSITLETGIRAEDDLTHKLVDIIRINNRLRQNIEAGAPQLIIEDLWDL 274
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+HV T +N+ G+P A KSG+PLK + RLKGKEGR RGNL GKRV+FSARTVI+P
Sbjct: 275 LQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISP 334
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DP + I++VGVP IA +T PE VT FN++
Sbjct: 335 DPMISINEVGVPIQIAMELTVPEKVTEFNIE 365
>gi|390960610|ref|YP_006424444.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. CL1]
gi|390518918|gb|AFL94650.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. CL1]
Length = 905
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 144/391 (36%), Positives = 205/391 (52%), Gaps = 40/391 (10%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTC 69
+ + ++FGILSP EIR+MS E I P+T + G P GGLMD R GV+D RC+TC
Sbjct: 6 KVIGSIEFGILSPQEIRKMSAAE--ITVPDTYDDDGYPIEGGLMDKRLGVVDPGLRCETC 63
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTK 129
ECPGHFGH++LA+P+ HVGF ++L C C ++ ++ ++ + + K +
Sbjct: 64 GARAGECPGHFGHVELARPIIHVGFAKTIHRVLESTCRECGRIKLTDE--EIEEYMHKFE 121
Query: 130 GQSRRRQA------FIYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRY 181
R++A I+ K + +C G + I + L+ ++G+ R
Sbjct: 122 VMGDRKKAKDRLIKEIHKKAKERMVCPHCGAPQFPIKFERPTIYWELRKDEEGNEYRHRM 181
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
P+ R L E +K +PL G + R + LT
Sbjct: 182 MPSEVRDRL----------EKIPDKDLPL---------------LGLHPEKARPEWMVLT 216
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + I L DDLTHKL DII+ NN L N +GA +I + +
Sbjct: 217 V--LPVPPVTMRPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDL 274
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+HV T +N+ G+P A KSG+PLK + RLKGKEGR RGNL GKRV+FSARTVI+P
Sbjct: 275 LQYHVTTYINNETSGIPPAKHKSGRPLKTLSQRLKGKEGRFRGNLSGKRVNFSARTVISP 334
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DP + I++VGVP ++A +T PE VT FN +
Sbjct: 335 DPMISINEVGVPIAVAMELTVPEKVTEFNFE 365
>gi|119514070|gb|ABL75808.1| RNA polymerase II largest subunit [Lepraria lobificans]
Length = 357
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 139/317 (43%), Positives = 186/317 (58%), Gaps = 35/317 (11%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+P+ D L+ + RR A ++ +CK K I E
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESNPQFADA-LRYRDPKRRFDA-VWRICKPKMIRETSV 58
Query: 154 EMDINKDGAED--PNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEK 206
+D ED P + K HGGCG QP +RR GL LT WK NE+ Q +
Sbjct: 59 TLD------EDALPEKDKQPKHDHGGCGNVQPEVRREGLKLTGTWKPQKGDEENEEQQPE 112
Query: 207 KIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----KI 256
K P+T + L R+ +I + GL EW + I
Sbjct: 113 KKPITPQMAL--------NIFRHISTEDITKMGLSNDYARPEWMIITVLPVPPPPVRPSI 164
Query: 257 PLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM 314
+ G + DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+
Sbjct: 165 SMDGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDI 224
Query: 315 PGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPN +D+VGVPR
Sbjct: 225 AGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNPSLDEVGVPR 284
Query: 375 SIAQNMTFPEIVTPFNM 391
S+A+ +T+PE VTP+N+
Sbjct: 285 SVARTLTYPETVTPYNI 301
>gi|119514068|gb|ABL75807.1| RNA polymerase II largest subunit [Sphaerophorus globosus]
Length = 356
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 139/316 (43%), Positives = 184/316 (58%), Gaps = 33/316 (10%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+ + + L+ + RR ++ LCK K +CE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDDSNAAMAEA-LRYRDPKRRFDG-VWRLCKPKMVCETTT 58
Query: 154 EMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKK 207
+D + P Q K K HGGCG QP IRR GL L WK NE Q +K
Sbjct: 59 HID-----EDAPLEEQKKPKHDHGGCGNIQPEIRREGLRLNGTWKAQKGDEENEGQQPEK 113
Query: 208 IPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEKK------- 255
P+T + L R+ +I+R GL EW +
Sbjct: 114 KPITPQMAL--------NIFRHISVEDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSIA 165
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+ + G DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+
Sbjct: 166 VDSSSVGRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIA 225
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRS
Sbjct: 226 GQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRS 285
Query: 376 IAQNMTFPEIVTPFNM 391
IA+ +T+PE VTP+N+
Sbjct: 286 IARTLTYPETVTPYNI 301
>gi|83320422|gb|ABC02838.1| RNA polymerase II largest subunit, partial [Batrachochytrium
dendrobatidis]
Length = 985
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 146/313 (46%), Positives = 190/313 (60%), Gaps = 26/313 (8%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+ K+L CVC YC KL V S+ R V+ + RRR ++ LCK K +CEGG
Sbjct: 1 GFLKIIKKVLECVCHYCGKLKVDESNE--RFVLFRRIKSRRRRFHEVWQLCKTKTVCEGG 58
Query: 153 DEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDS---QEKKIP 209
+E ++ G + PN +KK HGGCG+ QP R + L + A +K ++ + + I
Sbjct: 59 EEQ--SEGGQQKPNGHPHKKP-HGGCGQKQPVYRSAILKIMANFKATKDEDGKHEAQTIE 115
Query: 210 LTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKH----------VNEDSQEKKIPLT 259
+T + L R + + + L+A+W V I +
Sbjct: 116 MTPEKTL--------TLLRSISDQDATDMGLSADWARPEWMIITTLPVPPMPVRPSISMD 167
Query: 260 GKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPR 319
G G DDLTHKL DIIK N L R+E+ GA H++ E +LQFHVAT +ND+ LP+
Sbjct: 168 GAGRGEDDLTHKLMDIIKANISLKRHETEGAPAHIVNEFENLLQFHVATYMNNDIANLPQ 227
Query: 320 AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 379
AMQKSG+PLK+I ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL IDQVGVPRSIA+N
Sbjct: 228 AMQKSGRPLKSIAARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPRSIARN 287
Query: 380 MTFPEIVTPFNMD 392
+TFPE VTP+N+D
Sbjct: 288 LTFPETVTPYNID 300
>gi|119514088|gb|ABL75817.1| RNA polymerase II largest subunit [Trapeliopsis flexuosa]
Length = 358
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 137/317 (43%), Positives = 191/317 (60%), Gaps = 35/317 (11%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEG-- 151
F++K K+L VC C K+LV S+P+ D L +G +R +A I+ LCK K +CE
Sbjct: 1 FMSKIKKLLETVCHNCGKILVDESNPEFADA-LNYRGSKKRFEA-IWRLCKPKMVCESMA 58
Query: 152 -GDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-HVNEDSQEKKIP 209
G+E +++K +++P K HGGCG QP +RR GL L W+ +D E + P
Sbjct: 59 IGEEDELHK--SKEP------KHDHGGCGNIQPEVRRKGLKLYGTWEPQKGDDESEGQQP 110
Query: 210 ----LTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIP 257
+T + L + +I++ GL EW + I
Sbjct: 111 EEKDITPQMALNIFRHISA------EDIKKMGLSNDYARPEWMIITVLPVPPPPVRPSIS 164
Query: 258 LTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM 314
+ G G + DDLT+KL DII+ N + R E+ G+ HV+ E +LQFHVAT DND+
Sbjct: 165 VDGSGQGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVQEFEHLLQFHVATYMDNDI 224
Query: 315 PGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPR
Sbjct: 225 AGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPR 284
Query: 375 SIAQNMTFPEIVTPFNM 391
S+A+ +T+PE VTP+N+
Sbjct: 285 SVAKTLTYPETVTPYNI 301
>gi|119366170|gb|ABL67429.1| RNA polymerase II largest subunit [Phyllobaeis erythrella]
Length = 356
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 136/310 (43%), Positives = 184/310 (59%), Gaps = 21/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+L+ S P+ D + +++R I+ +CK K ICE
Sbjct: 1 FMTKIKKLLEMVCHNCGKILLDESSPEFADALRHR--DAKKRFNSIWAICKSKLICESLA 58
Query: 154 EMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTG 212
D +D N + K HGGCG QP +RR GL LT WK V + +E +
Sbjct: 59 ATD------DDENEKSKEPKHDHGGCGNIQPTVRREGLKLTGTWK-VQKGDEESESQQPE 111
Query: 213 KGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEW-----KHVNEDSQEKKIPLTGKGVL 264
K V+ + + ++++ GL EW V I + G G
Sbjct: 112 KRVIPPAEALNIFRHISAEDVKKMGLSNDYARPEWMVLTVLPVPPPPVRPSISVDGTGQG 171
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
+ DDLT+KL DII+ N + R E+ G+ HV AE ++LQFHVAT DND+ G P+A+
Sbjct: 172 MRGKDDLTYKLGDIIRANGNVRRCETEGSPAHVQAEFEQLLQFHVATYMDNDIAGQPQAL 231
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T
Sbjct: 232 QKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLT 291
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 292 YPETVTPYNI 301
>gi|120564951|gb|ABM27003.1| RNA polymerase II largest subunit, partial [Chytriomyces hyalinus]
Length = 1003
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 137/324 (42%), Positives = 189/324 (58%), Gaps = 31/324 (9%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAF--I 139
HI+LAKPVFH G++ KIL CVC+ C KL S+ + + +T + R+ F +
Sbjct: 1 HIELAKPVFHPGYLAMIKKILECVCYNCGKLKTDVSNERFK----RTLRLTNRKLKFNEV 56
Query: 140 YDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGL--------- 190
+++CK KN+CE G++ + N P S K HGGCG QP R+ GL
Sbjct: 57 WNICKAKNVCEAGEDGNPNDQA---PGS--KVKFNHGGCGAKQPTFRKDGLKFNMTTKPS 111
Query: 191 -DLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 249
D A K +N + ++ + + N G C ++ R + ++
Sbjct: 112 KDAEATTKVLNGEDCKRIFEMISDEDITNM----GLCPKWA---RPEWMIISVMPVPPMP 164
Query: 250 DSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
P G DDLT L I+K N ++ +E G+ HVI+E ++LQ+HVATL
Sbjct: 165 VRPSVTTP--GAPSAEDDLTFALQQIVKSNIQVKSHEQDGSPAHVISEFEQLLQYHVATL 222
Query: 310 TDNDMPGLPRAMQK-SGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
+N + GLP++ Q+ SG+PLK+I+ RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL ID
Sbjct: 223 MNNQLNGLPQSTQRRSGRPLKSIRDRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNID 282
Query: 369 QVGVPRSIAQNMTFPEIVTPFNMD 392
QVGVPRSIA+N+TFPE VTPFN++
Sbjct: 283 QVGVPRSIARNLTFPETVTPFNIE 306
>gi|394998749|gb|AFN44293.1| RNA polymerase II largest subunit, partial [Caloplaca isidiigera]
Length = 355
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 138/313 (44%), Positives = 188/313 (60%), Gaps = 28/313 (8%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+P + L+++ RR A I+ LCK K +CE
Sbjct: 1 FLTKIKKVLETVCHNCGKILVXESNPAFVEA-LRSRDPKRRFDA-IWRLCKPKMVCETS- 57
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
M + D +E P + + HGGCG QP +RR L LT WK +E Q +K
Sbjct: 58 -MPXDDDQSEKP---KEPRHDHGGCGNIQPEVRREALKLTGTWKAQKGDDEHEGQQAEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTG 260
P+T + + LN + +I++ GL EW + I + G
Sbjct: 114 PITPQ-MALNVFRNIS-----TEDIQKMGLSNDYARPEWMIITVLPVPPPPVRPSISMDG 167
Query: 261 KGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
G + DDLT+KL DII+ N + R + G+ H+ E +LQFHVAT DN++ GLP
Sbjct: 168 GGGMRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLTQEFENLLQFHVATYMDNNIAGLP 227
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 QALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 287
Query: 379 NMTFPEIVTPFNM 391
+T+PE VTP+N+
Sbjct: 288 TLTYPETVTPYNI 300
>gi|394998731|gb|AFN44284.1| RNA polymerase II largest subunit, partial [Brigantiaea cf.
tricolor Gaya 70]
Length = 355
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 135/315 (42%), Positives = 182/315 (57%), Gaps = 32/315 (10%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K+L VC C K+LV S+P D + ++R ++ LCK K +CE
Sbjct: 1 FLGXIKKLLETVCHNCGKILVDESNPAFVDA--QRVRDPKKRFDAVWRLCKPKMMCETSM 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
D ++P + K HGGCG QP +RR L LT WK NE +K
Sbjct: 59 PAD-----DDNPEKSKEPKHDHGGCGNIQPEVRREALKLTGTWKAQKGDEENEGQPAEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPL 258
P+T + L R+ +IR+ GL EW + I +
Sbjct: 114 PITPQMAL--------NVFRHISLEDIRKMGLSNDYARPEWMIITVLPVPPPPVRPSISV 165
Query: 259 TGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
G + DDLT+KL DII+ N + R E+ GA H+++E ++LQFHVAT DND+ G
Sbjct: 166 DGANGMRGEDDLTYKLGDIIRANGNVRRCENDGAPAHIVSEFEQLLQFHVATYMDNDVAG 225
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
LP+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 226 LPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 285
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP+N+
Sbjct: 286 ARTLTYPETVTPYNI 300
>gi|294610775|gb|ADF27179.1| RNA polymerase II largest subunit [Coniosporium apollinis]
Length = 357
Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 138/311 (44%), Positives = 177/311 (56%), Gaps = 23/311 (7%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+L S P RD + + +R +A ++ CK + ICE
Sbjct: 1 FITKIKKVLESVCTTCGKILSDDSKPDFRDA-QRIRDPKKRFEA-VWRACKDRKICE--- 55
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D D DP++ Q K HGGCG QP +RR GL L A + S+
Sbjct: 56 -RDERTDSDADPDAPQKKTPSHGGCGSNQPKLRREGLKLMATFPA----SKGDDDEDRVD 110
Query: 214 GVLLNKKQGHGGCGRYQPN--IRRSGLD---LTAEW-----KHVNEDSQEKKIPLTGKGV 263
L Q C R N +RR GL EW V I + G G
Sbjct: 111 DKRLFTPQEALNCFRLITNEDMRRLGLSSDYARPEWMVLTVLPVPPPPVRPSISVDGTGQ 170
Query: 264 LL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRA 320
+ DDLT+KL DII+ N + R E G+ HV+ E +LQ+HVAT DND+ G+P+A
Sbjct: 171 GMRGEDDLTYKLGDIIRANGNVRRAELEGSPQHVVNEYKDLLQYHVATFMDNDIAGIPQA 230
Query: 321 MQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNM 380
+QKSG+PLK I+ RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +
Sbjct: 231 LQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 290
Query: 381 TFPEIVTPFNM 391
T+PE VTP+N+
Sbjct: 291 TYPETVTPYNI 301
>gi|78714210|gb|ABB51087.1| RNA polymerase II largest subunit [Bondarzewia montana]
Length = 732
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 181/321 (56%), Gaps = 17/321 (5%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PVFH GF+ K KIL +C C KL S P D + + + R + ++
Sbjct: 1 HIELARPVFHPGFIVKVKKILESICVNCGKLKADISDPNFADKI-RHVXDPKARMSIVWG 59
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
CKGK ICE + + + K+GHGGCG QP +R+ GL L ++K +
Sbjct: 60 HCKGKMICETDE-----PKEEGEGAESEEPKKGHGGCGHIQPQVRKEGLKLFLQYKRSKD 114
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQ-PNIRRSGLD---LTAEWKHVNEDSQEK--- 254
D +E K L L + H + ++ GL EW +
Sbjct: 115 DDEEIK-SLQPDKRLFTASEVHNTLKKISDADLHLLGLSDEYARPEWMILTVMPVPPPPV 173
Query: 255 --KIPLTGKGVLL-DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
I + G + DDLT+KL DIIK + + R E GA HVI E ++LQFHVAT
Sbjct: 174 RPSIAVDGGAMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVITEFEQLLQFHVATXXX 233
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VG
Sbjct: 234 XXXXXXSQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVG 293
Query: 372 VPRSIAQNMTFPEIVTPFNMD 392
VP+SIA +T+PE VTP+N++
Sbjct: 294 VPKSIAMTLTYPERVTPYNIE 314
>gi|389852852|ref|YP_006355086.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. ST04]
gi|388250158|gb|AFK23011.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. ST04]
Length = 907
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 147/391 (37%), Positives = 205/391 (52%), Gaps = 40/391 (10%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTC 69
+ + ++FGILSP EIR+MS E + P+T + G P GG+MD R GVID RC+TC
Sbjct: 6 KVIGSIEFGILSPQEIRKMSAVE--VTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETC 63
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTK 129
ECPGHFGHI+LA+PV HVGF ++L C C ++ ++ ++ + + K +
Sbjct: 64 GARAGECPGHFGHIELARPVIHVGFAKTIHRVLESTCRECGRIKLTDE--EIEEYMKKLE 121
Query: 130 GQSRRRQAF------IYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRY 181
RR I+ + + +C G + I + L+ +QG+ R
Sbjct: 122 LAKNRRSEVNKILKEIHKKARERMVCPHCGAPQYPIKFEKPTIYWELRKDEQGNEYKHRM 181
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
P R L+ K +ED +PL G + R + LT
Sbjct: 182 MPTEVRDRLE-----KIPDED-----LPL---------------LGLHPEKSRPEWMVLT 216
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + I L DDLTHKL DII+ NN L +N +GA +I + +
Sbjct: 217 V--LPVPPVTVRPSITLETGIRAEDDLTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDL 274
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+HV T +N+ G+P A KSG+PLK + RLKGKEGR RGNL GKRV+FSARTVI+P
Sbjct: 275 LQYHVTTYINNETSGIPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISP 334
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DP + I++VGVP IA +T PE VT FN++
Sbjct: 335 DPMISINEVGVPIEIAMELTVPEKVTEFNIE 365
>gi|11499472|ref|NP_070713.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus fulgidus DSM
4304]
gi|2648656|gb|AAB89365.1| DNA-directed RNA polymerase, subunit A' (rpoA1) [Archaeoglobus
fulgidus DSM 4304]
Length = 867
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 148/386 (38%), Positives = 206/386 (53%), Gaps = 43/386 (11%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTCAG 71
+ ++F +LSP EIRRMSV + I PET + G P GGLMD R GVID RC+TC G
Sbjct: 6 ISAIKFEVLSPQEIRRMSVVK--IITPETYDDDGFPIDGGLMDTRLGVIDPGLRCKTCGG 63
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQ 131
ECPGHFGH++LA PV HVG+ ++L C C ++L+ +
Sbjct: 64 KAGECPGHFGHVELAAPVIHVGYAKMIARLLNGTCSECGRILL----------------K 107
Query: 132 SRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLD 191
RR FI ++ + K + + +E + K+ + KK H G + + +
Sbjct: 108 DERRDKFIAEIERRKELNQSYEE--VVKEVFRLTKA--AKKCPHCGAEQLEVKFDKPTFF 163
Query: 192 LTAEWKHVNEDSQE--KKIP---LTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKH 246
E + +D +E +KIP L G+ N K R LT
Sbjct: 164 YLGEHRLTPKDVREWLEKIPDDDLPAFGI--NPKA-----------TRPEWFVLTV--LP 208
Query: 247 VNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHV 306
V + I L DDLTHKL DII+ N + N+ +GA ++ + ++LQ+HV
Sbjct: 209 VPPVTVRPSIILETGQRSEDDLTHKLVDIIRINQRFMENKEAGAPQQILEDLWELLQYHV 268
Query: 307 ATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLR 366
T DN++ G+P A +SG+PLK + RLKGKEGR RG+L GKRV+FSARTVI+PDP L
Sbjct: 269 TTYIDNEVSGIPPARHRSGRPLKTLAQRLKGKEGRFRGSLSGKRVNFSARTVISPDPCLS 328
Query: 367 IDQVGVPRSIAQNMTFPEIVTPFNMD 392
I++VGVPR IA+ +T P VTP N+D
Sbjct: 329 INEVGVPREIAEELTVPIYVTPQNID 354
>gi|294610767|gb|ADF27175.1| RNA polymerase II largest subunit [Coniosporium apollinis]
Length = 362
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 141/317 (44%), Positives = 181/317 (57%), Gaps = 29/317 (9%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
FVTK K+L CVC C KLL S P RD + + +R +A ++ +CK K CE +
Sbjct: 2 FVTKIKKVLECVCHSCGKLLSDDSKPDFRDA-QRLRDPKKRFEA-VWRICKDKKTCEADE 59
Query: 154 --EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDL----TAEWKHVNEDSQEKK 207
+ DG K +GHGGCG P IRR GL L +ED Q++K
Sbjct: 60 PNAAEPGNDGDFSAPQKNPKTKGHGGCGSNMPKIRREGLKLMKTEVVAKGDDDEDRQDEK 119
Query: 208 IPLTGKGVLLNKKQGHGGCGR--YQPNIRRSGLD---LTAEW-----KHVNEDSQEKKIP 257
LT + L G R ++RR GL EW V I
Sbjct: 120 TQLTPQMAL--------GIFRNITDDDMRRMGLSSDYARPEWMVLTVLPVPPPPVRPSIS 171
Query: 258 LTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM 314
+ G G + DDLT+KL DII+ N + R+E G+ HV+ E +LQ+HVAT DND+
Sbjct: 172 VDGTGQGMRGEDDLTYKLGDIIRANASVRRSEIEGSPQHVVNEYKDLLQYHVATFMDNDI 231
Query: 315 PGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
GLP+A+QKSG+PLK I+ RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPR
Sbjct: 232 AGLPQALQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPR 291
Query: 375 SIAQNMTFPEIVTPFNM 391
SIA+ +T+PE VT +N+
Sbjct: 292 SIARTLTYPETVTQYNI 308
>gi|123979336|gb|ABM81493.1| RNA polymerase II largest subunit [Buellia dialyta]
Length = 994
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 138/315 (43%), Positives = 176/315 (55%), Gaps = 32/315 (10%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICE--- 150
F++K K+L VCF CSKLLV S+P +D + + R Q I+ +CK K +CE
Sbjct: 1 FISKIKKLLEMVCFSCSKLLVDESNPAFKDALRNRDPKKRFDQ--IWRICKPKMVCERLY 58
Query: 151 --GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDS 203
D D+ KD A D HGGCG QP +R+ GL L WK N+
Sbjct: 59 PQDDDNKDLQKDTAHD----------HGGCGNPQPEVRKDGLKLMGTWKPQKGDDENDAQ 108
Query: 204 QEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPL----- 258
Q K P+T + L K NI S EW +
Sbjct: 109 QGDKRPITPQMAL---KIFRDISPEDVKNIGLSNDYARPEWMIITVLPVPPPPVRPSIKT 165
Query: 259 -TGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
+G G DDLT+KL DII+ + + R E G H++ E +LQFHVAT ND G
Sbjct: 166 DSGDGPAGEDDLTYKLGDIIRASGNVRRGEQEGTPQHIVEEFETLLQFHVATYMSNDTAG 225
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P+A+QKSG+P+KAI++RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 226 QPQALQKSGRPVKAIRSRLKGKEGRVRGNLMGKRVDFSARTVITGDPNLCLDEVGVPRSI 285
Query: 377 AQNMTFPEIVTPFNM 391
A+ MT+PE VTP+N+
Sbjct: 286 ARTMTYPETVTPYNI 300
>gi|341581877|ref|YP_004762369.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. 4557]
gi|340809535|gb|AEK72692.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. 4557]
Length = 905
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 143/391 (36%), Positives = 205/391 (52%), Gaps = 40/391 (10%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTC 69
+ + ++FGILSP EIR+MS E I P+T + G P GGLMD R GV+D RC+TC
Sbjct: 6 KIIGSIEFGILSPQEIRKMSAAE--ITVPDTYDDDGYPIEGGLMDKRLGVVDPGLRCETC 63
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTK 129
+CPGHFGH++LA+P+ HVGF ++L C C ++ ++ ++ + + K +
Sbjct: 64 GARAGDCPGHFGHVELARPIVHVGFAKTIHRVLESTCRECGRIKLTDE--EIEEYMHKFE 121
Query: 130 GQSRRRQA------FIYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRY 181
R++A I+ K + +C G + I + L+ ++G+ R
Sbjct: 122 VMGDRKKAKDRLIKEIHKKAKERMVCPHCGAPQFPIKFERPTIYWELRKDEEGNEYRHRM 181
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
P+ R L E +K +PL G + R + LT
Sbjct: 182 MPSEVRDRL----------EKIPDKDLPL---------------LGLHPEKARPEWMILT 216
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + I L DDLTHKL DII+ NN L N +GA +I + +
Sbjct: 217 V--LPVPPVTMRPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDL 274
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+HV T +N+ G+P A KSG+PLK + RLKGKEGR RGNL GKRV+FSARTVI+P
Sbjct: 275 LQYHVTTYINNETSGIPPAKHKSGRPLKTLSQRLKGKEGRFRGNLSGKRVNFSARTVISP 334
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DP + I++VGVP ++A +T PE VT FN +
Sbjct: 335 DPMISINEVGVPMAVAMELTVPEKVTEFNFE 365
>gi|212223364|ref|YP_002306600.1| DNA-directed RNA polymerase subunit A' [Thermococcus onnurineus
NA1]
gi|212008321|gb|ACJ15703.1| Subunit A' of DNA-dependent RNA polymerase [Thermococcus onnurineus
NA1]
Length = 905
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 202/389 (51%), Gaps = 36/389 (9%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTC 69
+ + ++FGILSP EIR+MS E I P+T + G P GGLMD R GVID RC+TC
Sbjct: 6 KVIGSIEFGILSPQEIRKMSAAE--ITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETC 63
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPS----HPKVRDVV 125
+CPGHFGH++LA+P+ HVGF ++L C C ++ ++ + K +V+
Sbjct: 64 GARAGDCPGHFGHVELARPIIHVGFAKTIHRVLESTCRECGRIKLTDEEIDEYMKKFEVM 123
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
K R I+ K + +C G + I + L+ ++G+ R P
Sbjct: 124 GDRKKAKDRLIKEIHKKAKERMVCPHCGAPQFPIKFERPTIYWELRRDEEGNEYRHRMMP 183
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAE 243
+ R L E +K +PL G + R + LT
Sbjct: 184 SEVRDRL----------EKIPDKDLPL---------------LGLHPEKARPEWMVLTV- 217
Query: 244 WKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
V + I L DDLTHKL DII+ NN L N +GA +I + +LQ
Sbjct: 218 -LPVPPVTMRPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQ 276
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
+HV T +N+ G+P A KSG+PLK + RLKGKEGR RGNL GKRV+FSARTVI+PDP
Sbjct: 277 YHVTTYINNETSGIPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDP 336
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+ I++VGVP ++A +T PE VT FN +
Sbjct: 337 MISINEVGVPIAVAMELTVPEKVTEFNYE 365
>gi|119514074|gb|ABL75810.1| RNA polymerase II largest subunit [Fuscopannaria ignobilis]
Length = 347
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 138/309 (44%), Positives = 182/309 (58%), Gaps = 34/309 (11%)
Query: 101 ILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDI-NK 159
+L VC C K+LV S+P D L+ + RR A I+ LCK K CE +D N
Sbjct: 1 LLETVCHNCGKILVDESNPAFADA-LRYRDPKRRFDA-IWRLCKPKMTCETAAAIDDDNV 58
Query: 160 DGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKG 214
+ +++P K HGGCG QP +RR GL L WK NE Q +K P+T +
Sbjct: 59 EKSKEP------KHDHGGCGNVQPEVRREGLRLNGTWKAQKGDEENEGQQPEKKPITPQM 112
Query: 215 VLLNKKQGHGGCGRYQPN--IRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
L R+ N I++ GL EW + I + G +
Sbjct: 113 AL--------NIFRHISNEEIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGM 164
Query: 265 L--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQ 322
DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+ G P+A+Q
Sbjct: 165 RGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVTEFEQLLQFHVATYMDNDIAGQPQALQ 224
Query: 323 KSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTF 382
KSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+
Sbjct: 225 KSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTY 284
Query: 383 PEIVTPFNM 391
PE VTP+N+
Sbjct: 285 PETVTPYNI 293
>gi|330833901|ref|YP_004408629.1| DNA-directed RNA polymerase subunit A' [Metallosphaera cuprina
Ar-4]
gi|329566040|gb|AEB94145.1| DNA-directed RNA polymerase subunit A' [Metallosphaera cuprina
Ar-4]
Length = 886
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 142/398 (35%), Positives = 209/398 (52%), Gaps = 58/398 (14%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCA 70
+ VK ++FGILSPDEIR+MSVT I E G P G +MD R G+I+ +C C
Sbjct: 10 KIVKGIRFGILSPDEIRKMSVT-AIITADVYDEDGTPIEGSVMDSRLGIIEPGQKCPVCG 68
Query: 71 GNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPS----HPKVRDVVL 126
+ CPGHFGHI+L +PV HVGFV +LR C C ++ ++ + K+ D +
Sbjct: 69 NVIGSCPGHFGHIELVRPVIHVGFVKHVYDLLRSTCKRCGRIKINEEDIQKYKKIHDAIK 128
Query: 127 KTKGQSRRRQAFIYDLCKGKNI----CEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQ 182
K + +R + D K ++ C E + + N + +K+G
Sbjct: 129 KRWPSAAKR---LVDHVKKASMKATTCPHCSEKQLKIKLEKPYNFFEERKEGL------- 178
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA 242
+R + LD+ +++ + E L G Y P + R
Sbjct: 179 --MRLTPLDIRERLENIPDSDVE----LLG----------------YDPTVSR------P 210
Query: 243 EWKHVNEDSQEKKIPLTGKGVLL--------DDLTHKLADIIKCNNELIRNESSGAATHV 294
EW + + P+T + ++ DDLTHKL DI++ N L + +GA +
Sbjct: 211 EWIIL---TVLPVPPITIRPSIMIESGIRAEDDLTHKLVDIVRINERLKESIDAGAPQLI 267
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
+ + +LQ+HVAT DN++PGLP + +SG+PL+ + RLKGKEGR RGNL GKRVDFS
Sbjct: 268 VEDLWDLLQYHVATYFDNEIPGLPTSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFS 327
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVI+PDPN+ ID+VGVP +A +T PE VT +N++
Sbjct: 328 ARTVISPDPNISIDEVGVPYDVAMILTVPEKVTKWNIE 365
>gi|91095991|gb|AAW56763.2| RNA polymerase II largest subunit [Hygrophoropsis aurantiaca]
Length = 991
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 136/310 (43%), Positives = 182/310 (58%), Gaps = 18/310 (5%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVS-PSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEG 151
GF+ K KIL C+C C KL S P D + + + R A ++ CK K CE
Sbjct: 1 GFIVKVKKILECICVNCEKLKADISSDPNFADKIRHVR-DPKARMAVVWAHCKTKMTCET 59
Query: 152 GDEMDINKDG-AEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPL 210
+ + +G E+P K+GHGGCG QP IR+ GL L ++K ++ ++ K
Sbjct: 60 DEPKEEGDNGDTEEP------KKGHGGCGHIQPQIRKEGLKLFVQYKRPKDEDEDVKSLQ 113
Query: 211 TGKGVLLNKKQGHGGCGRYQPNIRRSGL-DLTA--EWKHVNEDSQEK-----KIPLTGKG 262
K + + ++ GL D A EW + I + G
Sbjct: 114 PDKRLFTPSEVYTTFKKMSDSDLHLIGLSDEYARPEWMILTVMPVPPPPVRPSIAVDGGA 173
Query: 263 VLL-DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
+ DDLT+KL DIIK + + R E GA HVI E ++LQFHVAT DND+ G+P+A+
Sbjct: 174 MRSEDDLTYKLGDIIKASVNVRRCEQEGAPAHVITEFEQLLQFHVATYMDNDIAGIPQAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL++D+VGVPRSIA N+T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQLDEVGVPRSIAMNLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPERVTPYNI 303
>gi|119514037|gb|ABL75791.1| RNA polymerase II largest subunit [Lecidea laboriosa]
Length = 357
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/318 (43%), Positives = 185/318 (58%), Gaps = 36/318 (11%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICE--G 151
F+TK K+ +C C K+LV S P+ RD L+ + +R A I+ LCK K CE
Sbjct: 1 FMTKIKKLXETICHNCGKILVDESDPRFRDA-LRFRDPKKRFDA-IWRLCKPKKKCETTA 58
Query: 152 GDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEK 206
G E D + D ++P K HGGCG P +RR GL L WK NE Q +
Sbjct: 59 GQEDD-SLDKPKEP------KHDHGGCGNTHPEVRREGLKLIGTWKAQKGEEENEGQQSE 111
Query: 207 KIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----KI 256
K P+T + L R+ +I+ GL EW + I
Sbjct: 112 KKPITPQMAL--------NIFRHISTEDIKTMGLSNDYARPEWMIITVLPVPPPPVRPSI 163
Query: 257 PLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM 314
+ G + DDLT+KL DII+ N + R E+ G+ H++ E +LQFHVAT DND+
Sbjct: 164 SVDGGNGMRGEDDLTYKLGDIIRANGNVQRCETEGSPAHIVTEFEHLLQFHVATYMDNDI 223
Query: 315 PGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPR
Sbjct: 224 AGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPR 283
Query: 375 SIAQNMTFPEIVTPFNMD 392
SIA+ +T+PE VTP+N++
Sbjct: 284 SIARTLTYPETVTPYNIE 301
>gi|357289799|gb|AET73112.1| RNA polymerase II largest subunit [Phaeocystis globosa virus 12T]
gi|357292599|gb|AET73935.1| RNA polymerase II largest subunit [Phaeocystis globosa virus 14T]
Length = 1512
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 149/418 (35%), Positives = 212/418 (50%), Gaps = 71/418 (16%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
M ++K P + + +QF +LSP EI++ SV E I +T +P LGGL DPR G++
Sbjct: 1 MTSHENKKPSKIIG-IQFSLLSPHEIQKGSVAE--IVNRDTYINNKPVLGGLFDPRMGIL 57
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
+ C T + + PG+FGHI+LA+PVF++ ++T +KILRCVC CSKLL+
Sbjct: 58 EPGFICPTDGLDYIQTPGYFGHINLARPVFYIQYLTTIMKILRCVCIKCSKLLIDKDK-- 115
Query: 121 VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHG---- 176
+L R + F +L +KK+ G
Sbjct: 116 -YSYLLNCNSDERWNKVF----------------------------ALASKKKRCGECCK 146
Query: 177 -GCGRYQPNIRRSGL-DLTAEWKHVNEDSQEKKIPL---TGKGVLLNKKQGHGGCGRYQP 231
GCG QP +++ GL L AEW E+ + + TGK ++ + R
Sbjct: 147 NGCGCLQPKLKKEGLATLIAEWNEKEEEIKNYEFSKDDGTGKLIMKLIPEIVIKILRKIS 206
Query: 232 NIRRSGLDLTAEWKH-------------------VNEDSQEKKIPLTGKGVLLDDLTHKL 272
+ + + ++ W V DSQ++ DDLTH +
Sbjct: 207 DEDVNFMGFSSIWSRPEWMICQTMAVPPPAVRPSVKHDSQQRS---------EDDLTHII 257
Query: 273 ADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIK 332
+IIK N L A ++VI + +LQ++VATL DN +PG+ Q+SG+PLKAIK
Sbjct: 258 VNIIKANKTLQEKIEQNANSNVIDDWSTVLQYYVATLVDNKIPGVAAVAQRSGRPLKAIK 317
Query: 333 ARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN 390
RL GK GR+RGNLMGKRVDFSAR+VITPDPNL I ++GVP IA+N+T P V N
Sbjct: 318 DRLNGKGGRVRGNLMGKRVDFSARSVITPDPNLSISELGVPLKIAKNLTKPVTVNSRN 375
>gi|168920044|gb|AAV54050.2| RNA polymerase II largest subunit [Boletellus projectellus]
Length = 997
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 138/309 (44%), Positives = 176/309 (56%), Gaps = 19/309 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K KI C+C C KL S P D + + + R A + CK K C D
Sbjct: 1 FIVKVKKIFECICVNCGKLKADISDPNFADKIRHVR-DPKARMAVAWSHCKTKMTC---D 56
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-HVNEDSQEKKIP--- 209
D ++G E + K+GHGGCG QP IR+ GL L ++K H +ED K +
Sbjct: 57 TDDPKEEGVE--GDVDEPKKGHGGCGHIQPLIRKEGLKLFVQYKRHKDEDEDLKSLQPDK 114
Query: 210 --LTGKGVLLNKKQGHGG----CGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV 263
T V K+ G R + LT V I + G +
Sbjct: 115 RLFTPSEVYTTFKKMSDSDLHLIGLSDEYARPEWMILTV--MPVPPPPVRPSIAVDGGAM 172
Query: 264 LL-DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQ 322
DDLT+KL DIIK + + R E GA HVI E ++LQFHVAT DND+ G+P+A+Q
Sbjct: 173 RSEDDLTYKLGDIIKASANVRRCEQEGAPAHVITEFEQLLQFHVATYMDNDIAGIPQALQ 232
Query: 323 KSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTF 382
KSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA N+T+
Sbjct: 233 KSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTY 292
Query: 383 PEIVTPFNM 391
PE VTP+N+
Sbjct: 293 PERVTPYNI 301
>gi|394998741|gb|AFN44289.1| RNA polymerase II largest subunit, partial [Caloplaca chilensis]
Length = 355
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 134/313 (42%), Positives = 187/313 (59%), Gaps = 28/313 (8%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+LV +P ++ + +RR I+ LCK K +CE
Sbjct: 1 FLGKIKKLLETVCHNCGKILVDDKNPAFKEALRHR--DPKRRFDGIWRLCKPKLVCE--- 55
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
++ +DG + P+ + ++ HGGCG QP +RR L LT WK +E Q +K
Sbjct: 56 -TNMPQDG-DQPDGPEEQRHDHGGCGNIQPEVRREALKLTGTWKAQKGDDEHEGQQAEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTG 260
P+T + + LN + +I+R GL EW + I + G
Sbjct: 114 PITPQ-MALNVFRNISTA-----DIQRMGLSNDYARPEWMIITVLPVPPPPVRPSISMDG 167
Query: 261 KGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
+ DDLT+KL DII+ N + R + G+ H+I E +LQFHVAT DN++ GLP
Sbjct: 168 GSGMRGEDDLTYKLGDIIRANGNVKRCDQDGSPQHLIQEFESLLQFHVATYMDNNIAGLP 227
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 QALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 287
Query: 379 NMTFPEIVTPFNM 391
+T+PE VTP+N+
Sbjct: 288 TLTYPETVTPYNI 300
>gi|226876164|gb|ACO89403.1| RNA polymerase II largest subunit, partial [Capronia sp. WUC 315]
Length = 983
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 138/321 (42%), Positives = 183/321 (57%), Gaps = 22/321 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+TK KIL VC C K+ S + L+ + +RR ++ L
Sbjct: 1 IKLATPVYHYGFMTKVKKILETVCHNCGKIKAVDSEDLRHALSLRDR---KRRFDAVWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNS-LQNKKQ-GHGGCGRYQPNIRRSGLDLTAEWK--- 197
K K +CE D EDP+ L+ Q HGGCG QP IRR GL L A WK
Sbjct: 58 SKPKLVCEA--------DPPEDPDQPLKGPAQPKHGGCGNAQPEIRRQGLQLWATWKPRK 109
Query: 198 -HVNEDSQEKKIPLTGKGVLLNKK----QGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQ 252
+ED+ +K + + L + + G R + L+A
Sbjct: 110 GEDDEDTTPEKKRIFPQDALNTFRTLTDETLELMGLSLDYARPDWMILSALPVPPPPVRP 169
Query: 253 EKKIPLTGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
+ +G+G DDLT KL DII+ N ++R E G H+ + +LQ+H+AT D
Sbjct: 170 SISVDGSGQGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMD 229
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
N++ GL RA KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VG
Sbjct: 230 NEIAGLDRAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVG 289
Query: 372 VPRSIAQNMTFPEIVTPFNMD 392
VPRSIA+N+T+PE VTPFN+D
Sbjct: 290 VPRSIARNLTYPETVTPFNLD 310
>gi|20090127|ref|NP_616202.1| DNA-directed RNA polymerase subunit A' [Methanosarcina acetivorans
C2A]
gi|19915107|gb|AAM04682.1| DNA-directed RNA polymerase, subunit A [Methanosarcina acetivorans
C2A]
Length = 880
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 198/389 (50%), Gaps = 49/389 (12%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTCAG 71
+ ++FG++SP EIR+MS T I +T + G P GLMD + GVID RC+TC+G
Sbjct: 11 IASIKFGLMSPKEIRKMSATP--IITADTYDDDGFPIDMGLMDTKLGVIDPGLRCKTCSG 68
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQ 131
ECPGHFGHI+L PV HVGF K+LR C CS+LL+ P+
Sbjct: 69 RAGECPGHFGHIELVAPVVHVGFNKVIRKLLRATCRKCSRLLLEPA-------------- 114
Query: 132 SRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLD 191
++Q F+ L + I P+ L N+ + P L+
Sbjct: 115 --QKQQFLDQLLAVEEI-------------GHMPDDLINEVYKEASKVKTCPYCNEEQLE 159
Query: 192 LTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWK--- 245
+ E ++ EK P + N +IR G+D EW
Sbjct: 160 IKFEKPSEYLENGEKLTPTEIRDRFENVPD---------EDIRVIGMDPKNARPEWMILT 210
Query: 246 --HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
V + I L DDLTHKL DII+ N N +GA +I + ++LQ
Sbjct: 211 VLPVPPVTVRPSITLESGQRSEDDLTHKLVDIIRINQRFQENREAGAPQLIIEDLWELLQ 270
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
+HV T DN + G+P A +SG+PLK + RLKGKEGR RG+L GKRV+FSARTVI+PDP
Sbjct: 271 YHVTTFFDNSVSGIPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDP 330
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
NL I++VGVP IA+ +T P +VTP N++
Sbjct: 331 NLSINEVGVPMPIARTLTIPAVVTPRNIE 359
>gi|374629649|ref|ZP_09702034.1| DNA-directed RNA polymerase, subunit A' [Methanoplanus limicola DSM
2279]
gi|373907762|gb|EHQ35866.1| DNA-directed RNA polymerase, subunit A' [Methanoplanus limicola DSM
2279]
Length = 881
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 146/385 (37%), Positives = 206/385 (53%), Gaps = 40/385 (10%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTCAG 71
V+K++FG+LSP +IRR SV + I + +T + G P GLMD GVID RC+TC
Sbjct: 7 VEKIEFGLLSPKDIRRTSVRK--IIWADTYDDDGFPYPQGLMDLHLGVIDPGLRCKTCGN 64
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQ 131
+ECPGHFGHI+LAKPV HVG+ K+LR C C +LL+S +D V K G
Sbjct: 65 RASECPGHFGHIELAKPVIHVGYTRLIRKLLRVSCRECGRLLLS------QDEVQKVLGP 118
Query: 132 SRRRQAFIYDL--CKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRR 187
R + K + +C G ++ IN + + + + G + P+ R
Sbjct: 119 EEERNDDVISEKDIKKERVCPYCGEQQLKINFEKPTTFSEVMTDENGKKIDHKLTPSDIR 178
Query: 188 SGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHV 247
S L E ++ + L G + + + P + T +
Sbjct: 179 SRL----------EKIPDEDLHLLGINARVARPEWTLLTVLPVPPV-------TMRPSII 221
Query: 248 NEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVA 307
E+ Q + DDLTHKL DII+ N N+ +GA +I + ++LQ+HV
Sbjct: 222 LENGQRSE----------DDLTHKLVDIIRINQRFKENQDAGAPQLIIEDLWELLQYHVT 271
Query: 308 TLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRI 367
T DN++ G P A +SG+PLK I RLKGK+GR RG+L GKRV+FSARTVI+PDPNL I
Sbjct: 272 TYMDNEVAGCPPARHRSGRPLKTISQRLKGKDGRFRGSLSGKRVNFSARTVISPDPNLSI 331
Query: 368 DQVGVPRSIAQNMTFPEIVTPFNMD 392
++VG+P +IA M+ P VTPFN+D
Sbjct: 332 NEVGIPLAIANEMSVPIRVTPFNID 356
>gi|118576747|ref|YP_876490.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Cenarchaeum symbiosum A]
gi|118195268|gb|ABK78186.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Cenarchaeum symbiosum A]
Length = 1260
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 140/392 (35%), Positives = 208/392 (53%), Gaps = 46/392 (11%)
Query: 10 LRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQT 68
++ + ++F + SP EIR+ SV E I PET E G P GGLMD R G ++ +C T
Sbjct: 6 VKSISAIRFSVWSPHEIRKYSVAE--ITAPETYDEEGMPVQGGLMDGRLGTLEPGQKCLT 63
Query: 69 CAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKT 128
C CPGHFGHI+LA+P+ H+ F+ K+L +C CS+L KV L +
Sbjct: 64 CGNTAARCPGHFGHIELAEPILHIAFIDNIHKLLLGMCRSCSRL-------KVPQEELDS 116
Query: 129 KGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRS 188
+ RRR++ Y + K I E +D K E P+ CG+ Q + +
Sbjct: 117 LSKIRRRES-AYTVISQKRIPE--QILDRAKKSKECPH-----------CGKTQYELIFT 162
Query: 189 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 248
+ E + E+ + +P+T + Y P R EW +
Sbjct: 163 KPTIFIEKTEIGEN---RLLPITIREKFSQITNEDLVLLGYDPATARP------EWFIL- 212
Query: 249 EDSQEKKIP-LTGKGVLL--------DDLTHKLADIIKCNNELIRNESSGAATHVIAENI 299
Q +P +T + ++ DDLTHK+ DII+ N L ++ +G ++ + +
Sbjct: 213 ---QALPVPPVTVRPSIILETGIRSEDDLTHKMVDIIRVNQRLKESKEAGTPPLIVQDLV 269
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
+LQ+H T DN++ G+P+A +SG+PLK + RLKGKEGR RG+L GKRVDFS+RTVI
Sbjct: 270 DLLQYHATTYFDNEISGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVI 329
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
+PDPNL + +VGVP S+A +T PEIVT +N+
Sbjct: 330 SPDPNLDLSEVGVPESVAMKLTIPEIVTEWNI 361
>gi|422727796|gb|AFX61755.2| RNA polymerase I largest subunit, partial [Ascosphaera torchioi]
Length = 1651
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 186/331 (56%), Gaps = 41/331 (12%)
Query: 85 LAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCK 144
LAKPVFH+GF+TK K+L VC C K+ + + P + L+ + RR A I+ L K
Sbjct: 1 LAKPVFHIGFLTKIKKLLETVCHNCGKIKANTADPNYLNS-LRYRDPKRRFDA-IWRLSK 58
Query: 145 GKNICEGGDEMDINKDGAEDPNSL---QNKKQGHGGCGRYQPNIRRSGLDLTAEWK---- 197
++CE AED ++L N HGGCG QP IR+ GL L WK
Sbjct: 59 DVSVCEA-------DPVAEDDDALGKGANPIVLHGGCGNTQPQIRKEGLTLVGTWKPHKR 111
Query: 198 ---HVNEDSQEKKI--PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNE 249
++ EKK+ P + + N ++R GL EW +N
Sbjct: 112 DMDDIDAQQPEKKVITPEMAQNIFKNISAD---------DVRLMGLSNDYARPEWMIINV 162
Query: 250 DSQEKKIPLT-----GKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
G G DDLT+KLA+I++ N ++R + G+ HV+ E +
Sbjct: 163 LPVPPPPVRPSVLVGGSGTNQRGEDDLTYKLAEIVRANQNVMRCLNEGSPEHVLREFEAL 222
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+HVAT DND+ G P+AMQKS +P+KAI+ RLKGKEGR+R NLMGKRVDFSARTVIT
Sbjct: 223 LQYHVATYMDNDIAGQPKAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITG 282
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPNL +D+VGVP SIA+ +T+PE+VTP+N++
Sbjct: 283 DPNLSLDEVGVPISIARTLTYPEVVTPYNIN 313
>gi|337283878|ref|YP_004623352.1| DNA-directed RNA polymerase subunit alpha [Pyrococcus yayanosii
CH1]
gi|334899812|gb|AEH24080.1| DNA-directed RNA polymerase subunit alpha [Pyrococcus yayanosii
CH1]
Length = 907
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 146/391 (37%), Positives = 205/391 (52%), Gaps = 40/391 (10%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTC 69
+ + ++FGILSP EIR+MS E + P+T + G P GG+MD R GVID RC+TC
Sbjct: 6 KVIGSIEFGILSPQEIRKMSAVE--VTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETC 63
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTK 129
ECPGHFGHI+LA+PV HVGF +IL C C ++ ++ ++ + + K +
Sbjct: 64 GARAGECPGHFGHIELARPVIHVGFAKTIHRILESTCRECGRIKLTDE--EIEEYMKKLE 121
Query: 130 GQSRRRQAF------IYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRY 181
RR I+ + + +C G + I + ++ +QG+ R
Sbjct: 122 LAGNRRSEVNKILKEIHKKARERMVCPHCGAPQFPIKFEKPTIYWEIRKDEQGNEYRHRM 181
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
P R L E +K +PL G L+ ++ R + LT
Sbjct: 182 MPTEVRDRL----------EKIPDKDLPLLG----LHPEKS-----------RPEWMVLT 216
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + I L DDLTHKL DII+ NN L +N +GA +I + +
Sbjct: 217 V--LPVPPVTVRPSITLETGIRAEDDLTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDL 274
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+HV T +N+ G+P A KSG+ LK + RLKGKEGR RGNL GKRV+FSARTVI+P
Sbjct: 275 LQYHVTTYINNETSGIPPAKHKSGRTLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISP 334
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DP + I++VGVP IA +T PE VT FN++
Sbjct: 335 DPMISINEVGVPIEIAMELTVPEKVTEFNIE 365
>gi|294610773|gb|ADF27178.1| RNA polymerase II largest subunit [Coniosporium apollinis]
Length = 356
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 137/311 (44%), Positives = 176/311 (56%), Gaps = 23/311 (7%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+L S P RD + + +R +A ++ CK + ICE
Sbjct: 1 FITKIKKVLESVCTTCGKVLSDDSKPDFRDA-QRIRDPKKRFEA-VWRACKDRKICE--- 55
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D D DP++ Q K HGGCG QP +RR GL L A + S+
Sbjct: 56 -RDERNDSEADPDAPQKKTPSHGGCGSNQPKLRREGLKLMATFPA----SKGDDDEDRAD 110
Query: 214 GVLLNKKQGHGGCGRYQPN--IRRSGLD---LTAEW-----KHVNEDSQEKKIPLTGKGV 263
L Q C R N +RR GL EW V I + G G
Sbjct: 111 DKRLFTPQEALNCFRLITNEDMRRLGLSSDYARPEWMVLTVLPVPPPPVRPSISVDGTGQ 170
Query: 264 LL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRA 320
+ DDLT+KL DII+ N + R E G+ HV+ E +LQ+HVAT DND+ G+P+A
Sbjct: 171 GMRGEDDLTYKLGDIIRANGNVRRAELEGSPQHVVNEYKDLLQYHVATFMDNDIAGIPQA 230
Query: 321 MQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNM 380
+QKSG+ LK I+ RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +
Sbjct: 231 LQKSGRALKTIRGRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 290
Query: 381 TFPEIVTPFNM 391
T+PE VTP+N+
Sbjct: 291 TYPETVTPYNI 301
>gi|111278799|gb|ABH09097.1| RNA polymerase II largest subunit [Ramichloridium anceps]
Length = 1002
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 137/322 (42%), Positives = 181/322 (56%), Gaps = 21/322 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKL-LVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
I LA PV+H GF+TK KIL VC C K+ + S ++R L + + RR A ++
Sbjct: 2 IKLATPVYHYGFMTKVKKILETVCHNCGKIKALDVSSEELRHA-LSLRDRKRRFDA-VWR 59
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
L K + ICE D D + P ++ HGGCG QP IRR GL L A WK
Sbjct: 60 LSKPRLICEADPAEDQESDPKKGPVQVK-----HGGCGNAQPEIRRQGLQLWASWKPRKG 114
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVNE-----DSQE 253
+ +E P K + + + + GL L EW ++
Sbjct: 115 EDEEDAAP--EKRRIFPQDALNTFRTLTDETLDMMGLSLDYARPEWMILSALPVPPPPVR 172
Query: 254 KKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
I + G G DDLT KL DII+ N ++R E G H+ + +LQ+H+AT
Sbjct: 173 PSISVDGSGQGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYM 232
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DN++ GL +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+V
Sbjct: 233 DNEIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEV 292
Query: 371 GVPRSIAQNMTFPEIVTPFNMD 392
GVPRSIA+ +TFPE VTPFN+D
Sbjct: 293 GVPRSIARTLTFPETVTPFNLD 314
>gi|315230006|ref|YP_004070442.1| DNA-directed RNA polymerase subunit A' [Thermococcus barophilus MP]
gi|315183034|gb|ADT83219.1| DNA-directed RNA polymerase subunit A' [Thermococcus barophilus MP]
Length = 906
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 148/390 (37%), Positives = 207/390 (53%), Gaps = 38/390 (9%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTC 69
+ + ++FGILSP EIR+MS E I P+T + G P GGLMD R GVID RC+TC
Sbjct: 6 KVIGSIEFGILSPQEIRKMSAAE--ITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETC 63
Query: 70 AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVS----PSHPKVRDVV 125
+CPGHFGHI+LA+PV HVGF +IL C C ++ ++ + K +++
Sbjct: 64 GARYGDCPGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIKLTDEEIEEYMKKFELI 123
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
K + I+ K + +C G + + + L+ +QG+ R P
Sbjct: 124 GDRKKTKDKLIKEIHKKAKERMVCPHCGAPQFPLKFERPTIYWELRRDEQGNEYKHRMMP 183
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAE 243
R L E ++ +PL G L+ ++ R + LT
Sbjct: 184 TEVRDRL----------EKIPDRDLPLLG----LHPEKS-----------RPEWMVLTV- 217
Query: 244 WKHVNEDSQEKKIPLTGKGVLLDD-LTHKLADIIKCNNELIRNESSGAATHVIAENIKML 302
V + I L G+ +D LTHKL DII+ NN L N +GA +I + +L
Sbjct: 218 -LPVPPVTVRPSITLES-GIRAEDDLTHKLVDIIRINNRLKTNIEAGAPQLIIEDLWDLL 275
Query: 303 QFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD 362
Q+HV T +N+ G+P A KSG+PLK + RLKGKEGR RGNL GKRV+FSARTVI+PD
Sbjct: 276 QYHVTTYINNETSGVPAAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPD 335
Query: 363 PNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
P L I++VGVP +IA +T PE VT FN++
Sbjct: 336 PMLSINEVGVPLAIAMELTVPEKVTDFNIE 365
>gi|123979324|gb|ABM81487.1| RNA polymerase II largest subunit [Cladonia stipitata]
Length = 984
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 139/317 (43%), Positives = 183/317 (57%), Gaps = 35/317 (11%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+ + S+PK D L+ + +R A I+ CK K +CE
Sbjct: 1 FMTKIKKLLETVCHNCGKIKLXESNPKFADA-LRFRDPKKRFDA-IWRHCKVKMVCETTV 58
Query: 154 EMDINKDGAED--PNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEK 206
+D ED P + K HGGCG QP IRR GL LT WK E Q +
Sbjct: 59 PLD------EDAPPEKQKEPKHEHGGCGNVQPEIRREGLRLTGTWKPQKGDEETEGQQPE 112
Query: 207 KIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----KI 256
K P+T + L R+ + +I GL EW + I
Sbjct: 113 KKPITPQMAL--------NIFRHISEEDIATLGLSKDYARPEWMIITVLPVPPPPVRPSI 164
Query: 257 PLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM 314
+ G + DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+
Sbjct: 165 SVDGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDI 224
Query: 315 PGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
G P+A+QKSG+P+K I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPR
Sbjct: 225 AGQPQALQKSGRPVKLIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPR 284
Query: 375 SIAQNMTFPEIVTPFNM 391
S+A+ +T+PE VTP+N+
Sbjct: 285 SVARTLTYPETVTPYNI 301
>gi|125657580|gb|ABN48853.1| RNA polymerase II largest subunit [Globobulimina turgida]
Length = 503
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 130/314 (41%), Positives = 193/314 (61%), Gaps = 7/314 (2%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
++LA P +HVGF+ T+++LRCVC +CS+LL + + L+ Q R R I L
Sbjct: 1 MELAGPCYHVGFLPITLRVLRCVCHHCSRLLCADPNSDAFKAALRITNQ-RERLIEILHL 59
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRR-SGLDLTAEW--KHV 199
C+ K C GD++D + D ++ N ++ + + GCG QP R+ +G+ + E+ +
Sbjct: 60 CEKKKHCGSGDKIDEDGDN-DNKNDPESNDKVYSGCGNIQPKYRKGTGVKIEIEFPAESG 118
Query: 200 NEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDSQEKKIP 257
N + +++K L+ + V + K+ C + + S D L + V+ + +
Sbjct: 119 NNNGEDRKQYLSARQVHEIFKRISEKDCRVLGFDTKYSPPDWLLIQVLPVSPPAVRPFVL 178
Query: 258 LTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGL 317
+ G DDLTHK+ DI+K NN L R E+ G HV+ E +++LQFHV T+ DN++ G
Sbjct: 179 MDGMRPSQDDLTHKIYDIMKTNNALKRQEARGVPEHVLEELVELLQFHVTTMIDNEVTGQ 238
Query: 318 PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 377
P+A QKSGKP+K+++ RL GK GR+RGNLMGKR DFSARTVI DPNL ID+VGVPRSIA
Sbjct: 239 PQAKQKSGKPIKSLRERLVGKAGRVRGNLMGKRCDFSARTVIGGDPNLSIDEVGVPRSIA 298
Query: 378 QNMTFPEIVTPFNM 391
N+T+PE VT FN+
Sbjct: 299 LNLTYPERVTKFNL 312
>gi|73671120|ref|YP_307135.1| DNA-directed RNA polymerase subunit A' [Methanosarcina barkeri str.
Fusaro]
gi|72398282|gb|AAZ72555.1| DNA-directed RNA polymerase, subunit A' [Methanosarcina barkeri
str. Fusaro]
Length = 880
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 147/389 (37%), Positives = 198/389 (50%), Gaps = 49/389 (12%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTCAG 71
+ ++FG+LSP EIR+MS T I +T + G P GLMD R GVID RC+TC+G
Sbjct: 11 ISSIKFGLLSPKEIRKMSSTP--IITADTYDDDGFPIDMGLMDTRLGVIDPGLRCKTCSG 68
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQ 131
ECPGHFGHI+L PV HVGF K+LR C CS+LL+ P+
Sbjct: 69 RAGECPGHFGHIELVAPVVHVGFNKVIRKLLRATCRKCSRLLLDPA-------------- 114
Query: 132 SRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLD 191
++Q F+ L + I P+ L N+ + P L+
Sbjct: 115 --QKQHFLDQLIGIEEI-------------GHMPDDLINEAYKEASKVKTCPYCNEEQLE 159
Query: 192 LTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWK--- 245
+ E ++ EK P + N +IR G+D EW
Sbjct: 160 IKFEKPTEYLENGEKLTPTEIRDRFENIPDD---------DIRVIGMDPKNARPEWMILT 210
Query: 246 --HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
V + I L DDLTHKL DII+ N N +GA +I + ++LQ
Sbjct: 211 VLPVPPVTVRPSITLESGQRSEDDLTHKLVDIIRINQRFQENREAGAPQLIIEDLWELLQ 270
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
+HV T DN + G+P A +SG+PLK + RLKGKEGR RG+L GKRV+FSARTVI+PDP
Sbjct: 271 YHVTTFFDNSVSGIPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDP 330
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
NL I++VGVP IA+ +T P +VTP N++
Sbjct: 331 NLSINEVGVPMPIARILTMPSVVTPRNIE 359
>gi|394998783|gb|AFN44310.1| RNA polymerase II largest subunit, partial [Xanthomendoza poeltii]
Length = 355
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 137/313 (43%), Positives = 187/313 (59%), Gaps = 28/313 (8%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+P + L+++ RR + I+ LCK K ICE
Sbjct: 1 FLTKIKKLLETVCHNCGKILVDESNPAFLEA-LRSRDPKRRFDS-IWRLCKPKLICETS- 57
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
M ++ D +E + + HGGCG QP +RR L LT WK +E Q +K
Sbjct: 58 -MPLDDDHSE---KTKEPRHDHGGCGNIQPEVRREALKLTGTWKAQKGDDEHEAQQAEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTG 260
P+T + + LN + +I+ GL EW + I + G
Sbjct: 114 PITPQ-MALNVFRNIS-----TEDIKTMGLSNDYARPEWMIITVLPVPPPPVRPSISMDG 167
Query: 261 KGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
+ DDLT+KL DII+ N + R + G+ H+I E +LQFHVAT DN++ GLP
Sbjct: 168 GAGMRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLIQEFENLLQFHVATYMDNNIAGLP 227
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 QALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 287
Query: 379 NMTFPEIVTPFNM 391
+T+PE VTP+N+
Sbjct: 288 TLTYPETVTPYNI 300
>gi|120561205|gb|ABM26988.1| RNA polymerase II largest subunit, partial [Neolecta vitellina]
Length = 997
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 140/362 (38%), Positives = 179/362 (49%), Gaps = 109/362 (30%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPVFH GF+TK IKIL+ VCF C KL + PK + + ++R +
Sbjct: 1 HIELAKPVFHSGFLTKVIKILQSVCFNCGKLKADQNDPKFIEAMRYRDPKARMNAMW--- 57
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
N C+G D + P G DL
Sbjct: 58 -----NACKGKSVCDSGPSTEDAP----------------------EGADL--------- 81
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKH--VNEDSQEKKIPLT 259
G+ HGGCG QP IR+ G L WK ++DSQ +K +T
Sbjct: 82 ------------GI------SHGGCGNPQPTIRKDGFKLWGTWKKSKTDQDSQPEKRAIT 123
Query: 260 GKGVLL--------------------------------------------------DDLT 269
VL DDLT
Sbjct: 124 ASEVLRIFQLISDEDLQKLGLSGEYARPEWMIITVLGVPPPPVRPSISVDGSARSEDDLT 183
Query: 270 HKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLK 329
+KLA+IIK N+ + R ES GA H++ E +LQFHVAT DN++PG P+A+QKSG+P+K
Sbjct: 184 YKLAEIIKANSNVRRTESEGAPAHIVTEFESLLQFHVATYMDNNIPGQPQAIQKSGRPVK 243
Query: 330 AIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPF 389
AI+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VT +
Sbjct: 244 AIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTSY 303
Query: 390 NM 391
N+
Sbjct: 304 NI 305
>gi|394998739|gb|AFN44288.1| RNA polymerase II largest subunit, partial [Caloplaca chalybaea]
Length = 355
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 137/315 (43%), Positives = 182/315 (57%), Gaps = 32/315 (10%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K KIL VC C K+LV S+P + L+ + RR A I+ LCK K +CE
Sbjct: 1 FLGKIKKILETVCHNCGKILVDESNPAFVEA-LRARDPKRRFDA-IWRLCKPKMVCE--T 56
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
M + D +E P + + HGGCG QP +RR L LT WK +E Q +K
Sbjct: 57 SMPLEDDQSEKP---KEPRHDHGGCGNIQPEVRREALKLTGTWKAQKGDDEHEGQQAEKK 113
Query: 209 PLTGKGVL--LNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPL 258
P+T + L H +I + GL EW + I +
Sbjct: 114 PITPQMALNVFRNISTH--------DIHKMGLSNDYARPEWMIITVLPVPPPPVRPSISM 165
Query: 259 TGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
G + DDLT+KL DII+ N + R + G+ H+ E +LQFHVAT DN++ G
Sbjct: 166 DGGAGMRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLTQEFENLLQFHVATYMDNNIAG 225
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
LP+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 226 LPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 285
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP+N+
Sbjct: 286 ARTLTYPETVTPYNI 300
>gi|21228373|ref|NP_634295.1| DNA-directed RNA polymerase subunit A' [Methanosarcina mazei Go1]
gi|452210796|ref|YP_007490910.1| DNA-directed RNA polymerase subunit A' [Methanosarcina mazei Tuc01]
gi|20906843|gb|AAM31967.1| DNA-directed RNA polymerase subunit A' [Methanosarcina mazei Go1]
gi|452100698|gb|AGF97638.1| DNA-directed RNA polymerase subunit A' [Methanosarcina mazei Tuc01]
Length = 880
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 144/389 (37%), Positives = 200/389 (51%), Gaps = 49/389 (12%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTCAG 71
+ ++FG++SP EIR+MS T I +T + G P GLMD + GVID RC+TC+G
Sbjct: 11 ISSIKFGLMSPKEIRKMSATP--IITADTYDDDGFPIDMGLMDTKLGVIDPGLRCKTCSG 68
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQ 131
ECPGHFGHI+L PV HVGF K+LR C CSK+L+ P+
Sbjct: 69 RAGECPGHFGHIELVAPVVHVGFNKVIRKLLRATCRKCSKILLEPA-------------- 114
Query: 132 SRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLD 191
++Q F+ D++ ++ P+ L N+ + P L+
Sbjct: 115 --QKQQFL-------------DQLTAVEEIGHMPDDLINEVYKEASKVKNCPYCNEEQLE 159
Query: 192 LTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWK--- 245
+ E ++ EK P + N +IR G+D EW
Sbjct: 160 IKFEKPSEYLENGEKLTPTEIRDRFENIPD---------EDIRVVGMDPKNARPEWMILT 210
Query: 246 --HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
V + I L DDLTHKL DII+ N N +GA +I + ++LQ
Sbjct: 211 VLPVPPVTVRPSITLESGQRSEDDLTHKLVDIIRINQRFQENREAGAPQLIIEDLWELLQ 270
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
+HV T DN + G+P A +SG+PLK + RLKGKEGR RG+L GKRV+FSARTVI+PDP
Sbjct: 271 YHVTTFFDNSVSGIPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDP 330
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
NL I++VGVP IA+ +T P +VTP N++
Sbjct: 331 NLSINEVGVPMPIAKILTMPAVVTPRNIE 359
>gi|113707382|gb|ABI36590.1| RNA polymerase II largest subunit [Teloschistes exilis]
Length = 1003
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 137/322 (42%), Positives = 185/322 (57%), Gaps = 30/322 (9%)
Query: 86 AKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKG 145
A VFH+GF+ K+L VC C K+LV S+P + L+ + RR A I+ LCK
Sbjct: 2 AAXVFHIGFLRHIKKLLETVCHNCGKILVDESNPAFAEA-LRHRDPKRRFDA-IWRLCKP 59
Query: 146 KNICEGGD-EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HV 199
K +CE + D D + +P + HGGCG QP IR+ L L WK
Sbjct: 60 KLVCETTPPQTDDQLDRSGEP------RHDHGGCGNVQPEIRKEALALNGTWKAQKGDDE 113
Query: 200 NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-- 254
+E Q +K P+T + L + +I++ GL EW +
Sbjct: 114 HEGQQAEKKPITPQMALSVFRNIS------TDDIKKMGLSNDYARPEWMIITVLPVPPPP 167
Query: 255 ---KIPLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G L DDLT+KL DII+ N + R + G+ H+ E +LQFHVAT
Sbjct: 168 VRPSISMDGANGLRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLTQEFENLLQFHVATY 227
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DN++ GL +A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+
Sbjct: 228 MDNNIAGLGQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDE 287
Query: 370 VGVPRSIAQNMTFPEIVTPFNM 391
VGVPRSIA+ +T+PE VTP+N+
Sbjct: 288 VGVPRSIAKTLTYPETVTPYNI 309
>gi|294610769|gb|ADF27176.1| RNA polymerase II largest subunit [Coniosporium apollinis]
Length = 356
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 137/311 (44%), Positives = 176/311 (56%), Gaps = 23/311 (7%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+L S P RD + + +R +A ++ CK + ICE
Sbjct: 1 FITKIKKVLESVCTTCGKVLSDDSKPDFRDA-QRIRDPKKRFEA-VWRACKDRKICE--- 55
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D D DP++ Q K HGGCG QP +RR GL L A + S+
Sbjct: 56 -RDERNDFEADPDAPQKKTPSHGGCGSNQPKLRREGLKLMATFPA----SKGDDDEDRVD 110
Query: 214 GVLLNKKQGHGGCGRYQPN--IRRSGLD---LTAEW-----KHVNEDSQEKKIPLTGKGV 263
L Q C R N +RR GL EW V I + G G
Sbjct: 111 DKRLFTPQEALNCFRLITNEDMRRLGLSSDYARPEWMVLTVLPVPPPPVRPSISVDGTGQ 170
Query: 264 LL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRA 320
+ DDLT+KL DII+ N + R E G+ HV+ E +LQ+HVAT DND+ G+P+A
Sbjct: 171 GMRGEDDLTYKLGDIIRANGNVRRAELEGSPQHVVNEYKDLLQYHVATFMDNDIAGIPQA 230
Query: 321 MQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNM 380
+QKSG+ LK I+ RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +
Sbjct: 231 LQKSGRALKTIRGRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 290
Query: 381 TFPEIVTPFNM 391
T+PE VTP+N+
Sbjct: 291 TYPETVTPYNI 301
>gi|394998757|gb|AFN44297.1| RNA polymerase II largest subunit, partial [Fulgensia fulgens]
Length = 355
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 135/314 (42%), Positives = 187/314 (59%), Gaps = 30/314 (9%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+L+ S+P + + K +RR I+ LCK K +CE
Sbjct: 1 FLGKIKKLLETVCHNCGKILIDESNPAFVEALRKR--DPKRRFDAIWRLCKPKMVCETSQ 58
Query: 154 EMDINK-DGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKK 207
+D ++ D A++P K+ HGGCG QP +RR L LT WK +E Q +K
Sbjct: 59 PLDGDQSDKAKEP------KRDHGGCGNIQPEVRREALKLTGTWKAQKGDDEHEGQQAEK 112
Query: 208 IPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLT 259
P+T + + LN + +I++ GL EW + I +
Sbjct: 113 KPITPQ-MALNVFRNIS-----TEDIQKMGLSNDYARPEWMIITVLPVPPPPVRPSISMD 166
Query: 260 GKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGL 317
G + DDLT+KL DII+ N + R + G+ H+ E +LQFHVAT DN++ GL
Sbjct: 167 GGAGMRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLTQEFENLLQFHVATYMDNNIAGL 226
Query: 318 PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 377
P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA
Sbjct: 227 PQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIA 286
Query: 378 QNMTFPEIVTPFNM 391
+ +T+PE VTP+N+
Sbjct: 287 RTLTYPEAVTPYNI 300
>gi|327242113|gb|AEA40835.1| RNA polymerase II largest subunit [Pentatrichomonas hominis]
Length = 1721
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 145/404 (35%), Positives = 213/404 (52%), Gaps = 45/404 (11%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
+ + FG+ P+E+++ + E I P+ E G+ GGL D R G RC+TC +
Sbjct: 11 IGSIDFGLFDPEEVKKFAACE--ITKPQNYENGKIVTGGLSDLRMGTQSPEYRCRTCGQD 68
Query: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQS 132
+ CPGHFG+I+LA+P FH+GF K KIL+ VC C +LLVS S P+V+ +V KG+
Sbjct: 69 LQNCPGHFGYINLAEPFFHIGFSDKVYKILQMVCHKCGRLLVSYSDPEVQYIVTHFKGKD 128
Query: 133 RRRQAFIYDLCKGK-NICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLD 191
R + I++ GK + C E + + A++ + + +GG
Sbjct: 129 RFTR--IFEKISGKTHKCAHPTEKNKDPSQADEVVDEEFWNRVNGG-------------- 172
Query: 192 LTAEWKHVNEDSQEKKIP--LTGKGVLLNKKQGHGGCGRYQP--------------NIRR 235
L E V E E +P GK L+ K G Y P ++R
Sbjct: 173 LNGEHHRVKEPCNEA-VPEVAMGKDFLVIYKDGSKTDEDYIPAERVLNIFENISDQDLRI 231
Query: 236 SGLD---LTAEWK-----HVNEDSQEKKIPLTGKGV-LLDDLTHKLADIIKCNNELIRNE 286
G D +W V S ++ G+ DD+THKL +++ N L
Sbjct: 232 MGFDPKRSHPKWMILTVLPVPPLSVRPQVSSPGQAAPSQDDVTHKLHSLLQTNEHLKLQL 291
Query: 287 SSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNL 346
++GA +AE+ ++LQ+H++T ND P + RA KS +PLK I RLKGKEG IRG+L
Sbjct: 292 ANGAPDTALAEDRQLLQWHISTYFINDKPSMDRAENKSHRPLKVISQRLKGKEGHIRGHL 351
Query: 347 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN 390
GKRV+FSAR+VI+PDP++ IDQVGVP+ +A+ +TFPE+VT N
Sbjct: 352 SGKRVNFSARSVISPDPSIEIDQVGVPKELAKILTFPEVVTTLN 395
>gi|394998771|gb|AFN44304.1| RNA polymerase II largest subunit, partial [Seirophora lacunosa]
Length = 355
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 135/313 (43%), Positives = 184/313 (58%), Gaps = 28/313 (8%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+LV S+P + L+++ RR A I+ LCK K +CE
Sbjct: 1 FLGKIKKVLETVCHNCGKILVDESNPAFVEA-LRSRSPKRRFDA-IWRLCKPKMVCE--T 56
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
M + D +E + + HGGCG QP +RR L LT WK +E Q +K
Sbjct: 57 SMPLEDDQSE---KAKEPRHDHGGCGNIQPEVRREALKLTGTWKAQKGDDEHEGQQGEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTG 260
P+T + L + +I++ GL EW + I + G
Sbjct: 114 PITPQMALSVFRN------ISTEDIQKMGLSNDYARPEWMIITVLPVPPPPVRPSISMDG 167
Query: 261 KGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
G + DDLT+KL DII+ N + R + G+ H+ E +LQFHVAT DN++ GLP
Sbjct: 168 GGGMRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLTQEFENLLQFHVATYMDNNIAGLP 227
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 QALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 287
Query: 379 NMTFPEIVTPFNM 391
+T+PE VTP+N+
Sbjct: 288 TLTYPETVTPYNI 300
>gi|341859016|gb|AEK97418.1| ribosomal polymerase II largest subunit [Cordyceps cicadae]
Length = 954
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 183/310 (59%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE D
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVAAIRTRDPKLRFKR--VWAVCKKKRKCENED 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P + +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKDEEFAPGAKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVTSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISERDLHNMGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
+ DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 MRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|119514033|gb|ABL75789.1| RNA polymerase II largest subunit [Hypocenomyce scalaris]
Length = 369
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 142/327 (43%), Positives = 186/327 (56%), Gaps = 42/327 (12%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C +LV +P D L+ + +R A I+ LCK K +CE
Sbjct: 1 FMTKIKKLLETVCHNCGTILVDEHNPAFADA-LRYRDPKKRFDA-IWRLCKPKLVCETLA 58
Query: 154 EMDINKDGAEDPNSLQNK--KQG---------HGGCGRYQPNIRRSGLDLTAEWK----- 197
D + ED ++ K KQG HGGCG QP +RR GL LT WK
Sbjct: 59 AQDKEE---EDSSTRTGKIGKQGGRDKEPAHDHGGCGNIQPEVRRDGLKLTGSWKAQKGD 115
Query: 198 HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQ 252
NE Q +K PLT + L R+ IR+ GL EW +
Sbjct: 116 EENEGQQPEKKPLTPQMAL--------NIFRHISDEEIRKMGLSNDYARPEWMIITVLPV 167
Query: 253 EK-------KIPLTGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQF 304
+ TG+G+ DDLT+KL DII+ N + R E+ G+ H+ + +LQF
Sbjct: 168 PPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHISKDFEDLLQF 227
Query: 305 HVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
HVAT DND+ G P+ +QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPN
Sbjct: 228 HVATYMDNDIAGQPQTLQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPN 287
Query: 365 LRIDQVGVPRSIAQNMTFPEIVTPFNM 391
L +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 288 LSLDEVGVPRSIARTLTYPETVTPYNI 314
>gi|111278801|gb|ABH09098.1| RNA polymerase II largest subunit [Pyrenula pseudobufonia]
Length = 1007
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 192/328 (58%), Gaps = 27/328 (8%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKL-LVSPSHPKVRDVVLKTKGQSRRRQAFIY 140
HI+LA PV+H GF+ KIL VC C K+ + S ++R + K R R ++
Sbjct: 1 HIELAVPVYHHGFLKMVKKILETVCHNCGKVKAIDVSGEELR--LAKAIPNKRTRFEKVW 58
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQG-----HGGCGRYQPNIRRSGLDLTAE 195
L K ICE DI+++G ++ +K++G HGGCG QP IR SGL+L
Sbjct: 59 QLSKKHRICEA----DISEEGDQE----FSKEKGPPRPKHGGCGNAQPEIRLSGLNLMTS 110
Query: 196 WKHV----NEDSQEKKIPLTGKGVL----LNKKQGHGGCGRYQPNIRRSGLDLTAEWKHV 247
WK NE Q + PLT L L + G N R + L+
Sbjct: 111 WKPTKDGDNEPVQAETRPLTPPTALNILRLMNDEEMEEIGLDTKNARPEWMILSVLPVPP 170
Query: 248 NEDSQEKKIPLTGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHV 306
+ +G+G DDLT KL DI++ N + R + G+ H++ E++++LQ+HV
Sbjct: 171 PPVRPSISMDGSGQGARGEDDLTFKLGDIVRANQNVRRVQQEGSPEHILNEHVQLLQWHV 230
Query: 307 ATLTDNDMPGLP--RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
AT +ND+ G+ +A K+G+P+K+I+ARLKGK+GR+R NLMGKRVDFSARTVIT DPN
Sbjct: 231 ATYMNNDIAGMDGLKAQHKTGRPIKSIRARLKGKDGRLRQNLMGKRVDFSARTVITGDPN 290
Query: 365 LRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
L +D+VGVPRSIA+N+T+PE+VTPFN+D
Sbjct: 291 LSLDEVGVPRSIARNLTYPEVVTPFNVD 318
>gi|394998759|gb|AFN44298.1| RNA polymerase II largest subunit, partial [Ioplaca pindarensis]
Length = 355
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 135/313 (43%), Positives = 183/313 (58%), Gaps = 28/313 (8%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F K K+L VC C K+LV S+P + + + + +RR I+ LCK K ICE
Sbjct: 1 FSQKIKKLLETVCHNCGKILVDESNPAFVEALRRR--EPKRRFDAIWRLCKPKMICETNV 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
+D D AE + + HGGCG QP +R+ L LT WK +E Q +K
Sbjct: 59 PLD--DDQAE---KQKEPRHDHGGCGNIQPEVRKEALKLTGSWKAQKGDDEHEGQQAEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTG 260
P+T + L + +I++ GL EW + I + G
Sbjct: 114 PITPQMALSVFRNISS------EDIQKLGLSNDYARPEWMIITVLPVPPPPVRPSISMDG 167
Query: 261 KGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
G + DDLT+KL DII+ N + R + G+ H+I E +LQFHVAT DN++ GLP
Sbjct: 168 GGGMRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLIQEFENLLQFHVATYMDNNIAGLP 227
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 QALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 287
Query: 379 NMTFPEIVTPFNM 391
+T+PE VTP+N+
Sbjct: 288 TLTYPETVTPYNI 300
>gi|300122988|emb|CBK23995.2| unnamed protein product [Blastocystis hominis]
Length = 1828
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 138/397 (34%), Positives = 214/397 (53%), Gaps = 45/397 (11%)
Query: 8 APLRCVKKVQFGILSPDEIRRMSVTEG------GIKFPETMEGGRPKLGGLMDPRQGVID 61
APLR ++ + FGILSPDE+ + SVT G GI E G+P GGL DPR G I
Sbjct: 9 APLRRIRSIDFGILSPDEVVKNSVTTGIGGEDNGITRVEISANGKPVKGGLNDPRMGTIS 68
Query: 62 RSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKV 121
S +C+TC + +CPGHFGHI L +FH GF+ ++L C+CF C K LV P+
Sbjct: 69 SSGKCETCNRSYEDCPGHFGHIHLNAEIFHTGFLDIIYRVLTCICFNCGKCLV----PRG 124
Query: 122 RDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRY 181
+T + R+ + +++ K ++++ + HGGCG
Sbjct: 125 DIPENETDTDNCRKLSRVFNRVK----------------------TIKDCSREHGGCGHA 162
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGC---GRYQPNIRRSG 237
P++ L + +K N+D+QE ++ V L +K C G P I+
Sbjct: 163 WPHLLSRSLKILITYK--NDDNQEVSDYISPSSVKDLFRKISPEDCRFMGFNYPEIKPEY 220
Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHV 294
+ L+ + + P+ G DD+T+ L++I+K N + + G +
Sbjct: 221 MILS----EIPVPPLAVRPPVMLPGSTTPSEDDITYALSNILKANKAISGDRFRGKGRNG 276
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
+ ++++MLQ + + DN+ +P+A+QK+ +PLK + R+KGK GR+RGNLMGKRV+FS
Sbjct: 277 MDDDLEMLQTYYSNYCDNERKNVPQAIQKNKRPLKTFRQRIKGKTGRVRGNLMGKRVNFS 336
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
R+VIT DP + ID+VGVP+S+A +TFPE VT +N+
Sbjct: 337 GRSVITADPTIDIDEVGVPKSLAAILTFPERVTRYNI 373
>gi|341859020|gb|AEK97420.1| ribosomal polymerase II largest subunit [Isaria farinosa]
Length = 954
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 182/310 (58%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ V + R ++ ++ +CK K CE D
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAVNTRDPKLRFKR--VWAVCKKKRKCENED 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P +GHGGCG QP +R++ L L A ++ V+E+ ++K +
Sbjct: 59 RQDKNKDEDFAPGVKSVVLEGHGGCGNMQPQVRQAALQLKAAFEVVSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRYQP-NIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISDRDLHNIGLNSDYARPEWMVITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
+ DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 MRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|226876158|gb|ACO89400.1| RNA polymerase II largest subunit, partial [Capronia sp. WUC 26]
Length = 983
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 138/323 (42%), Positives = 182/323 (56%), Gaps = 26/323 (8%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+TK KIL VC C K+ +P +R L + + RR A ++ L
Sbjct: 1 IKLATPVYHYGFMTKVKKILETVCHNCGKI-KAPESEDLRHA-LSLRDRKRRFDA-VWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNS-LQNKKQ-GHGGCGRYQPNIRRSGLDLTAEWKHVN 200
K + +CE D EDP+ L+ Q HGGCG QP IRR GL L A WK
Sbjct: 58 SKPRLVCEA--------DPPEDPDQPLKGPPQPKHGGCGNAQPEIRRQGLQLWASWKPRK 109
Query: 201 EDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVNE-----DSQ 252
+ +E P K + + + + GL L +W ++
Sbjct: 110 GEDEEDTTP--EKKRIFPQDALNTFRTLTDETLELMGLSLDYARPDWMILSALPVPPPPV 167
Query: 253 EKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G G DDLT KL DII+ N ++R E G H+ + +LQ+H+AT
Sbjct: 168 RPSISVDGSGQGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATY 227
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DN++ GL RA KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+
Sbjct: 228 MDNEIAGLDRAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 287
Query: 370 VGVPRSIAQNMTFPEIVTPFNMD 392
VGVPRSIA+ +T+PE VTPFN+D
Sbjct: 288 VGVPRSIARTLTYPETVTPFNLD 310
>gi|394998737|gb|AFN44287.1| RNA polymerase II largest subunit, partial [Caloplaca carphinea]
Length = 355
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 136/313 (43%), Positives = 184/313 (58%), Gaps = 28/313 (8%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+LV S+P + L+ + RR A I+ LCK K ICE
Sbjct: 1 FLGKIKKLLETVCHNCGKILVDESNPAFVEA-LRARDPKRRFDA-IWRLCKPKMICETSM 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
MD ++ P + + HGGCG QP +RR L LT WK +E Q +K
Sbjct: 59 PMDDDQ-----PEKGKEPRHDHGGCGNIQPEVRREALKLTGTWKAQKGDDEHEGQQAEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTG 260
P+T + + LN + +I++ GL EW + I + G
Sbjct: 114 PITPQ-MALNVFRNIS-----TEDIQKMGLSNDYARPEWMIITVLPVPPPPVRPSISMDG 167
Query: 261 KGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
+ DDLT+KL DII+ N + R + G+ H+ E +LQFHVAT DN++ GLP
Sbjct: 168 GAGMRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLTQEFENLLQFHVATYMDNNIAGLP 227
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 QALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 287
Query: 379 NMTFPEIVTPFNM 391
+T+PE VTP+N+
Sbjct: 288 TLTYPETVTPYNI 300
>gi|111278789|gb|ABH09092.1| RNA polymerase II largest subunit [Endocarpon pallidulum]
Length = 1010
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 139/322 (43%), Positives = 182/322 (56%), Gaps = 22/322 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKL-LVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
I LA PV+H GF+ K K+L VC C K+ V S +R + T ++R I+
Sbjct: 2 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDVSSEDLRYAL--TVRNPKKRFEPIWR 59
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
L + +NIC+ D EDP + + K GHGGCG QP IRRSGL+L A++K
Sbjct: 60 LSQKQNICQADSPED-----EEDPTARERSGKVGHGGCGNAQPQIRRSGLELWAQYKPRK 114
Query: 201 EDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQ 252
D E+ +P K + + + GL+L EW +
Sbjct: 115 GDDDEETVP--EKSQIWPAQALEVFQHLTDETLDTLGLNLDFARPEWMILQSLPVPPPPV 172
Query: 253 EKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 173 RPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 232
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+
Sbjct: 233 MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 292
Query: 370 VGVPRSIAQNMTFPEIVTPFNM 391
VGVPRSIA+ +T+PE VT FN+
Sbjct: 293 VGVPRSIARTLTYPETVTRFNI 314
>gi|157741540|gb|ABV69475.1| RNA polymerase II largest subunit, partial [Endocarpon
diffractellum]
Length = 999
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 180/321 (56%), Gaps = 22/321 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S + ++ ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSEDLRYALTVRN---PKKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
+ +NIC+ D EDP + + K GHGGCG QP IRRSGL+L A++K
Sbjct: 58 SQKQNICQADSPED-----EEDPAARERSGKVGHGGCGNAQPQIRRSGLELWAQYKPRKG 112
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQE 253
D E+ +P K + + + GL+L EW +
Sbjct: 113 DDDEETVP--EKSQIWPAQALEVFQHLTDETLDTLGLNLDFARPEWMILQSLPVPPPPVR 170
Query: 254 KKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 171 PSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYM 230
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+V
Sbjct: 231 DNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEV 290
Query: 371 GVPRSIAQNMTFPEIVTPFNM 391
GVPRSIA+ +T+PE VT FN+
Sbjct: 291 GVPRSIARTLTYPETVTRFNI 311
>gi|157741552|gb|ABV69481.1| RNA polymerase II largest subunit, partial [Thelidium decipiens]
Length = 999
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 133/319 (41%), Positives = 180/319 (56%), Gaps = 18/319 (5%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S V ++ + ++R ++ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSEDLRYAVSVRDR---KKRFDLVWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSL-QNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
+ +N+C+ D +DPN+ + K HGGCG QP IR+SGL+L A++K
Sbjct: 58 SQKQNVCQADSPED-----EDDPNAKDKGGKIRHGGCGNAQPAIRKSGLELWAQYKPRKG 112
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQEKK 255
D +E+ +P + Q + LD EW +
Sbjct: 113 DDEEETVPEKSQIWPAQALQVFQHLTDETLDTLGMNLDFARPEWMILQSLPVPPPPVRPS 172
Query: 256 IPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDN 312
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DN
Sbjct: 173 ISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATYMDN 232
Query: 313 DMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGV 372
D+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGV
Sbjct: 233 DIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGV 292
Query: 373 PRSIAQNMTFPEIVTPFNM 391
PRSIA+ +T+PE VTPFN+
Sbjct: 293 PRSIARTLTYPETVTPFNI 311
>gi|146302819|ref|YP_001190135.1| DNA-directed RNA polymerase subunit A' [Metallosphaera sedula DSM
5348]
gi|145701069|gb|ABP94211.1| DNA-directed RNA polymerase, subunit A' [Metallosphaera sedula DSM
5348]
Length = 886
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 145/398 (36%), Positives = 207/398 (52%), Gaps = 58/398 (14%)
Query: 11 RCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCA 70
+ +K V+FGILSPDEIR+MSVT I E G P G +MD R G+I+ +C C
Sbjct: 10 KIIKGVRFGILSPDEIRKMSVT-AIITADVYDEDGTPIEGSVMDSRLGIIEPGQKCPICG 68
Query: 71 GNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPS----HPKVRDVVL 126
+ CPGHFGHI+L +PV HVGFV +LR C C ++ +S + + K+ D +
Sbjct: 69 NVIGNCPGHFGHIELVRPVIHVGFVKHVYDLLRSTCRRCGRVKISENDIEKYRKIYDAIK 128
Query: 127 KTKGQSRRRQAFIYDLCKGKN----ICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQ 182
K + +R + D K + +C E + + N + +K+ G R
Sbjct: 129 KRWPSAAKR---LIDHVKKTSMKAAVCPHCSEKQLKIKLEKPYNFYEERKE---GVMRLT 182
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA 242
P+ R L E + + L G Y P R
Sbjct: 183 PSDIRERL----------ERIPDSDVELLG----------------YDPTTSR------P 210
Query: 243 EWKHVNEDSQEKKIPLTGK-------GVLLDD-LTHKLADIIKCNNELIRNESSGAATHV 294
EW + + P+T + G+ +D LTHKL DI++ N L + +GA +
Sbjct: 211 EWIIL---TVLPVPPITIRPSIMIESGIRAEDDLTHKLVDIVRINERLKESIDAGAPQLI 267
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
+ + +LQ+HVAT DN++PGLP + +SG+PL+ + RLKGKEGR RGNL GKRVDFS
Sbjct: 268 VEDLWDLLQYHVATYFDNEIPGLPTSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFS 327
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTVI+PDPN+ ID+VGVP +AQ +T PE VT +N++
Sbjct: 328 ARTVISPDPNISIDEVGVPYDVAQILTVPEKVTKWNIE 365
>gi|394998751|gb|AFN44294.1| RNA polymerase II largest subunit, partial [Caloplaca scoriophila]
Length = 355
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 135/313 (43%), Positives = 184/313 (58%), Gaps = 28/313 (8%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+LV S+P + L+ + RR A I+ LCK K +CE
Sbjct: 1 FLGKIKKLLETVCHNCGKILVDESNPAFVEA-LRARDPKRRFDA-IWRLCKPKMVCETSM 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
MD ++ P + + HGGCG QP +RR L LT WK +E Q +K
Sbjct: 59 PMDDDQ-----PEKGKEPRHDHGGCGNIQPEVRREALKLTGTWKAQKGDDEHEGQQAEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTG 260
P+T + + LN + +I++ GL EW + I + G
Sbjct: 114 PITPQ-MALNVFRNIS-----TEDIQKMGLSNDYARPEWMIITVLPVPPPPVRPSISMDG 167
Query: 261 KGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
+ DDLT+KL DII+ N + R + G+ H+ E +LQFHVAT DN++ GLP
Sbjct: 168 GAGMRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLTQEFENLLQFHVATYMDNNIAGLP 227
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 QALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 287
Query: 379 NMTFPEIVTPFNM 391
+T+PE VTP+N+
Sbjct: 288 TLTYPETVTPYNI 300
>gi|394998743|gb|AFN44290.1| RNA polymerase II largest subunit, partial [Caloplaca cinnamomea]
Length = 355
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 137/313 (43%), Positives = 185/313 (59%), Gaps = 28/313 (8%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+LV S P + L+++ RR A I+ LCK K ICE
Sbjct: 1 FLGKIKKLLETVCHNCGKVLVDESEPAFVEA-LRSRDPKRRFDA-IWRLCKPKMICE--T 56
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
M + D + P + +K HGGCG QP +RR L LT WK +E Q +K
Sbjct: 57 SMPLPDDQGDKP---KEQKHDHGGCGNIQPEVRREALKLTGTWKAQKGDDEHEGQQAEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTG 260
P+T + + LN + +I++ GL EW + I + G
Sbjct: 114 PITPQ-MALNVFRNIS-----TEDIQKMGLSNDYARPEWMIITVLPVPPPPVRPSISMDG 167
Query: 261 KGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
+ DDLT+KL DII+ N + R + G+ H+ E +LQFHVAT DN++ GLP
Sbjct: 168 GAGMRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLTQEFENLLQFHVATYMDNNIAGLP 227
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 QALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 287
Query: 379 NMTFPEIVTPFNM 391
+T+PE VTP+N+
Sbjct: 288 TLTYPETVTPYNI 300
>gi|38091162|emb|CAE46435.1| RNA polymerase II largest subunit [Reticulomyxa filosa]
Length = 408
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 128/321 (39%), Positives = 187/321 (58%), Gaps = 18/321 (5%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFG+++LA+P +HVGF++ +++LRCVC +CS+LL + + + V R
Sbjct: 1 ECPGHFGYMELARPCYHVGFLSVVLRVLRCVCHHCSRLLANQNDSAFKRAV--AIQNPRD 58
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRS-GLDLT 193
R + LC+ KN C I K +E+ +L N GCG QP R++ G+ +
Sbjct: 59 RLVAVAALCENKNECGY-----IEKRESEENGTLVN------GCGSVQPKYRKAKGVGIE 107
Query: 194 AEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGR--YQPNIRRSGLDLTAEWKHVNED 250
E+ + ++K+ + + L + + C + P R L + V
Sbjct: 108 MEYPEAKDQGEDKRQKFSAQQCLDILSRISDEDCQILGFHPTYCRVDW-LIIQVLPVCPP 166
Query: 251 SQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
+ + + G DD+THKL DI+K N++L R E+ G HV+ + + +LQFHV T+
Sbjct: 167 AVRPFVLMDGIRPSQDDITHKLYDILKVNDQLNRQEARGVPEHVLEDLVDLLQFHVTTMI 226
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DN++ G P A QKSGKP+K+ + RL GK GR+RGNLMGKR DFSARTVI DPNL ID+V
Sbjct: 227 DNEVSGQPVAKQKSGKPIKSFRQRLVGKAGRVRGNLMGKRCDFSARTVIGGDPNLSIDEV 286
Query: 371 GVPRSIAQNMTFPEIVTPFNM 391
GVPRSIA +T+PE VT +N+
Sbjct: 287 GVPRSIACLLTYPERVTKYNL 307
>gi|394998779|gb|AFN44308.1| RNA polymerase II largest subunit, partial [Teloschistes
hosseusianus]
Length = 355
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 179/316 (56%), Gaps = 34/316 (10%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+LV S+P D + + +RR I+ LCK K +CE
Sbjct: 1 FINKIKKLLETVCHNCGKILVDESNPAFADALRQR--DPKRRFDTIWRLCKPKLVCEATP 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-------HVNEDSQEK 206
++ P+ + K HGGCG QP IRR L L WK H + +++K
Sbjct: 59 PQTDDQ-----PDRPREPKHDHGGCGNVQPEIRREALALNGTWKAQKGDDEHEGQPAEKK 113
Query: 207 KI-PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIP 257
I P GV N +I++ GL EW + I
Sbjct: 114 PITPQMALGVFRNISTD---------DIKKMGLSNDYARPEWMIITVLPVPPPPVRPSIS 164
Query: 258 LTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+ G L DDLT+KL DII+ N + R + G+ H+ E +LQFHVAT DN++P
Sbjct: 165 MDGANGLRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLTQEFENLLQFHVATYMDNNIP 224
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
GL +A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRS
Sbjct: 225 GLGQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRS 284
Query: 376 IAQNMTFPEIVTPFNM 391
IA+ +T+PE VTP+N+
Sbjct: 285 IAKTLTYPETVTPYNI 300
>gi|294610771|gb|ADF27177.1| RNA polymerase II largest subunit [Coniosporium apollinis]
Length = 351
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 136/311 (43%), Positives = 175/311 (56%), Gaps = 23/311 (7%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+L S P RD + + +R +A ++ CK + ICE
Sbjct: 1 FITKIKKVLESVCTACGKVLSDDSKPDFRDAQ-RIRDPKKRFEA-VWRACKDRKICE--- 55
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D D DP++ Q K HGGCG QP +R GL L A + S+
Sbjct: 56 -RDERNDSEADPDAPQKKTPSHGGCGSNQPKLRSEGLKLMATFPA----SKGDDDEDRAD 110
Query: 214 GVLLNKKQGHGGCGRYQPN--IRRSGLD---LTAEW-----KHVNEDSQEKKIPLTGKGV 263
L Q C R N +RR GL EW V I + G G
Sbjct: 111 DKRLFTPQEALNCFRLITNEDMRRLGLSSDYARPEWMVLTVLPVPPPPVRPSISVDGTGQ 170
Query: 264 LL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRA 320
+ DDLT+KL DII+ N + R E G+ HV+ E +LQ+HVAT DND+ G+P+A
Sbjct: 171 GMRGEDDLTYKLGDIIRANGNVRRAELEGSPQHVVNEYKDLLQYHVATFMDNDIAGIPQA 230
Query: 321 MQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNM 380
+QKSG+ LK I+ RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +
Sbjct: 231 LQKSGRALKTIRGRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 290
Query: 381 TFPEIVTPFNM 391
T+PE VTP+N+
Sbjct: 291 TYPETVTPYNI 301
>gi|157741600|gb|ABV69505.1| RNA polymerase II largest subunit, partial [Verrucaria nigrescens]
Length = 999
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 134/320 (41%), Positives = 180/320 (56%), Gaps = 20/320 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S + ++ ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSEDLRYALTVRN---PKKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNED 202
+ +N+C+ D A+D ++ K GHGGCG QP IRRSGL+L A++K D
Sbjct: 58 SQKQNVCQADSPEDEEDPMAKD----KSGKVGHGGCGNAQPQIRRSGLELWAQYKPRKGD 113
Query: 203 SQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQEK 254
E+ +P K + + + GL+L EW +
Sbjct: 114 DDEETVP--EKSQIWPAQALEVFQHLTDETLETLGLNLDFARPEWMILQSLPVPPPPVRP 171
Query: 255 KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT D
Sbjct: 172 SISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMD 231
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
ND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VG
Sbjct: 232 NDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVG 291
Query: 372 VPRSIAQNMTFPEIVTPFNM 391
VPRSIA+ +T+PE VT FN+
Sbjct: 292 VPRSIARTLTYPETVTRFNI 311
>gi|157741536|gb|ABV69473.1| RNA polymerase II largest subunit, partial [Polyblastia
viridescens]
Length = 999
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 136/319 (42%), Positives = 179/319 (56%), Gaps = 18/319 (5%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S +R V G ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSE-DLRYAVSVRDG--KKRFDLIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
+ +NIC+ D +DPN+ + K HGGCG QP IR++GL+L A++K
Sbjct: 58 SQKQNICQADSPED-----EDDPNAKEKGGKIRHGGCGNAQPAIRKAGLELWAQYKPRKG 112
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQEKK 255
D +E+ +P + Q LD EW +
Sbjct: 113 DDEEETVPEKSQIWPAQALQVFQHLTDETLETLGMNLDFARPEWMILQSLPVPPPPVRPS 172
Query: 256 IPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDN 312
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DN
Sbjct: 173 ISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATYMDN 232
Query: 313 DMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGV 372
D+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGV
Sbjct: 233 DIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGV 292
Query: 373 PRSIAQNMTFPEIVTPFNM 391
PRSIA+ +T+PE VTPFN+
Sbjct: 293 PRSIARTLTYPETVTPFNI 311
>gi|158427124|gb|ABW38177.1| RNA polymerase II largest subunit [Cladosporium cladosporioides]
Length = 362
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 144/330 (43%), Positives = 186/330 (56%), Gaps = 45/330 (13%)
Query: 89 VFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNI 148
V GFVTK KIL VC C KLL +P+ + V +RR ++ +CK K I
Sbjct: 2 VLPPGFVTKVKKILESVCHNCGKLLDDERNPQFKQAV--NIRDPKRRFDQVHKICKPKMI 59
Query: 149 CEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK--HVNEDSQ-- 204
CE D N D DP + + K +GHGGCG QP IR+ L L WK ED +
Sbjct: 60 CEPDSTEDGN-DDFNDPKA-KLKIKGHGGCGNIQPEIRKEALKLNGTWKLPKGQEDEEGD 117
Query: 205 --EKKIPLTGKGVLLNKKQGHGGCGRYQPNIRR--SGLDLT----------AEWK----- 245
+K P+T + L N+ R S DLT EW
Sbjct: 118 KGPEKRPITPQMAL---------------NVFRNVSDRDLTILGCNADYARPEWMIMTVM 162
Query: 246 HVNEDSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKML 302
V + I + G + DDLT+KL+DII+ N+ + R E G+ HV+ E I +L
Sbjct: 163 PVPPPAVRPSISVDGTSQGMRSEDDLTYKLSDIIRANSNVKRCEQEGSPQHVVDEFISLL 222
Query: 303 QFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD 362
Q+HVAT DND+ GLP+A QKSG+P+KAI+ARLK KEGR+RGNLMGKRVDFSARTVIT D
Sbjct: 223 QYHVATYMDNDIAGLPKAQQKSGRPVKAIRARLKSKEGRLRGNLMGKRVDFSARTVITGD 282
Query: 363 PNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PNL +D+VGVPRSIA+ ++FPE V +N++
Sbjct: 283 PNLSLDEVGVPRSIARTLSFPETVNNYNIN 312
>gi|119514115|gb|ABL75831.1| RNA polymerase II largest subunit [Dactylina arctica]
Length = 312
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 131/298 (43%), Positives = 173/298 (58%), Gaps = 27/298 (9%)
Query: 109 CSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSL 168
C K+LV S+P D + + ++R ++ LCK K ICE M ++ D D
Sbjct: 2 CGKILVDESNPAFADALRRR--DPKKRFDLVWRLCKPKMICE--TTMALDDDAPSD--KA 55
Query: 169 QNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGH 223
+ K HGGCG QP +RR GL LT WK NE Q +K P+T + L +
Sbjct: 56 KEPKHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPEKKPITPQMALNIFRHIS 115
Query: 224 GGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGKGVL-------LDDLTHKLA 273
+I+R GL EW + V DDLT+KL
Sbjct: 116 AD------DIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLTYKLG 169
Query: 274 DIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKA 333
DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+ G P+A+QKSG+P+K+I+A
Sbjct: 170 DIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRA 229
Query: 334 RLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 230 RLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 287
>gi|119514112|gb|ABL75829.1| RNA polymerase II largest subunit [Alectoria ochroleuca]
Length = 344
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 132/300 (44%), Positives = 174/300 (58%), Gaps = 31/300 (10%)
Query: 109 CSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSL 168
C K+LV S+P D + + ++R ++ LCK K ICE M ++ D P
Sbjct: 1 CGKILVDESNPAFADAIRRR--DPKKRFDSVWRLCKPKMICE--TTMAVDDDTP--PEKT 54
Query: 169 QNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGH 223
+ K HGGCG QP +RR GL LT WK NE Q +K P+T + L
Sbjct: 55 KEPKHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPEKKPITPQMAL------- 107
Query: 224 GGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGKGVL-------LDDLTHK 271
R+ +I+R GL EW + V DDLT+K
Sbjct: 108 -NIFRHISTEDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLTYK 166
Query: 272 LADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAI 331
L DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+ G P+A+QKSG+P+K+I
Sbjct: 167 LGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSI 226
Query: 332 KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 227 RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 286
>gi|13274166|emb|CAC33858.1| RNA polymerase II largest subunit [Loma acerinae]
Length = 894
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 141/337 (41%), Positives = 182/337 (54%), Gaps = 64/337 (18%)
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLL---VSPSHPKVRDVVLKT--------- 128
GH+DL KPVFHVG++ K K+L VCFYCS+L VS S V++T
Sbjct: 1 GHMDLVKPVFHVGYMNKIKKVLETVCFYCSRLKGYDVSNSIDAEMSHVVETIVSEEKKEN 60
Query: 129 --KGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIR 186
+ + F + LCK K C C QP I+
Sbjct: 61 LKNKKKIKSLNFWWSLCKAKTACMH--------------------------CQSKQPLIK 94
Query: 187 RSGLDLTAEWKHVNEDSQEKKIPLTG-------KGVLLNKKQGHGGCGRYQPNIRRSGLD 239
R GL LTA K E+S E K+ L G K + + + G +Y
Sbjct: 95 RDGLSLTAFIK--GEESTEGKVILNGEKVSSIFKRISTEENEMLGFDEKYS--------- 143
Query: 240 LTAEWK-----HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW +V+ S + L G DDLTHKL+DI+KCN L ++E GA H+
Sbjct: 144 -RPEWMIISVLNVHAMSVRPSVVLEGTLRGEDDLTHKLSDIVKCNKNLEKHEKEGAPGHI 202
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I + +LQ+HVATL DN +PGLP+++QKSG+PLK+I ARLKGKEGR+RGNLMGKRVDFS
Sbjct: 203 IRDYENLLQYHVATLMDNSIPGLPQSLQKSGRPLKSISARLKGKEGRMRGNLMGKRVDFS 262
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
AR+VI+PD NL +D+VGVP IA+ TFPE VT FN+
Sbjct: 263 ARSVISPDSNLSLDEVGVPIQIAKIHTFPEKVTSFNI 299
>gi|157741534|gb|ABV69472.1| RNA polymerase II largest subunit, partial [Polyblastia cupularis]
Length = 999
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 134/320 (41%), Positives = 178/320 (55%), Gaps = 20/320 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR-RQAFIYD 141
I LA PV+H GF+ K K+L VC C K+ S D+ + R+ R I+
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVESE----DLRYAVSSRDRKKRFELIWR 56
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
L + +N+C+ D +DPN+ + K HGGCG QP IR++GL+L A++K
Sbjct: 57 LSQKQNVCQADSPED-----EDDPNAKEKGGKIRHGGCGNAQPVIRKTGLELWAQYKPRK 111
Query: 201 EDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQEK 254
D +E+ +P + Q LD EW +
Sbjct: 112 GDDEEETVPEKSQIWPAQALQVFQHLTDETLETLGMNLDFARPEWMILQSLPVPPPPVRP 171
Query: 255 KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT D
Sbjct: 172 SISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATYMD 231
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
ND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VG
Sbjct: 232 NDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVG 291
Query: 372 VPRSIAQNMTFPEIVTPFNM 391
VPRSIA+ +T+PE VTPFN+
Sbjct: 292 VPRSIARTLTYPETVTPFNI 311
>gi|157741548|gb|ABV69479.1| RNA polymerase II largest subunit, partial [Staurothele immersa]
Length = 999
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 132/322 (40%), Positives = 181/322 (56%), Gaps = 24/322 (7%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S V ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSEDLRYAVSVRDR---KKRFDLIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQG----HGGCGRYQPNIRRSGLDLTAEWKH 198
+ +N+C+ D ED + K++G HGGCG QP IR++GL+L A++K
Sbjct: 58 SQKQNVCQA--------DSPEDDDDPNAKEKGGKIRHGGCGNAQPAIRKAGLELWAQYKP 109
Query: 199 VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQ 252
D +E+ +P + + Q + LD EW +
Sbjct: 110 RKGDDEEETVPEKSQIWPAHALQVFQHLTDETLDTLGMNLDFARPEWMILQSLPVPPPPV 169
Query: 253 EKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 170 RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATY 229
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND+ L +A KSG+P+K+I+ARL+GKEGR+R NLMGKRVDFSARTVIT DPNL +D+
Sbjct: 230 MDNDIANLDKAQHKSGRPIKSIRARLRGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289
Query: 370 VGVPRSIAQNMTFPEIVTPFNM 391
VGVPRSIA+ +T+PE VTPFN+
Sbjct: 290 VGVPRSIARTLTYPETVTPFNI 311
>gi|394998747|gb|AFN44292.1| RNA polymerase II largest subunit, partial [Caloplaca gloriae]
Length = 355
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 132/313 (42%), Positives = 182/313 (58%), Gaps = 28/313 (8%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+L+ S+P + + K +RR I+ LCK K ICE
Sbjct: 1 FLGKIKKLLETVCHNCGKILIDESNPAFVEALRKR--DPKRRFDAIWRLCKPKMICETSQ 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
++ + + + K+ HGGCG QP +RR L LT WK E Q +K
Sbjct: 59 PLE-----GDQTDKAKEAKRDHGGCGNLQPEVRREALKLTGTWKAQKGDDEREGQQAEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTG 260
P+T + + LN + +I++ GL EW + I + G
Sbjct: 114 PITPQ-MALNVFRNIS-----TEDIQKMGLSNDYARPEWMIITVLPVPPPPVRPSISMDG 167
Query: 261 KGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
+ DDLT+KL DII+ N + R + G+ H+ E +LQFHVAT DN++ GLP
Sbjct: 168 GAGMRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLTQEFENLLQFHVATYMDNNIAGLP 227
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 QALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 287
Query: 379 NMTFPEIVTPFNM 391
+T+PE VTP+N+
Sbjct: 288 TLTYPETVTPYNI 300
>gi|45439293|gb|AAS64314.1| DNA-dependent RNA polymerase II largest subunit [Amanita
phalloides]
Length = 1007
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 140/367 (38%), Positives = 176/367 (47%), Gaps = 110/367 (29%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA+PVFH GF+ K KIL +C C KL P D + + + R A +++
Sbjct: 1 HIELARPVFHPGFIVKVKKILESICVNCGKLKADIMDPNFADKIRHIR-DPKARMAVVWN 59
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
CK K CE + +DGAE N
Sbjct: 60 HCKTKMGCEPDEPP--KEDGAEGEND---------------------------------- 83
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDS------QEKK 255
K+GHGGCG QP IR+ GL L +K +D Q +K
Sbjct: 84 ----------------EPKKGHGGCGHVQPQIRKEGLKLFVHYKKTKDDDEDMKSLQPEK 127
Query: 256 IPLTGKGVLL-------------------------------------------------- 265
P T V
Sbjct: 128 RPFTPSEVYTTFKKMSDSDLHLLGLSDEYARPEWMILTVLPVPPPPVRPSIAVDGGTMRS 187
Query: 266 -DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKS 324
DDLT+KL DIIK + + R E GA HVI E ++LQFHVAT DND+ G+P+A+QKS
Sbjct: 188 EDDLTYKLGDIIKASANVRRCEQEGAPAHVINEFEQLLQFHVATYMDNDIAGVPQALQKS 247
Query: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPE 384
G+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA N+T+PE
Sbjct: 248 GRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTYPE 307
Query: 385 IVTPFNM 391
VTP+N+
Sbjct: 308 RVTPYNI 314
>gi|157741582|gb|ABV69496.1| RNA polymerase II largest subunit, partial [Verrucaria
hochstetteri]
Length = 999
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 180/322 (55%), Gaps = 24/322 (7%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S V ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKALDSEDLRYAVSVRDR---KKRFDLIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQG----HGGCGRYQPNIRRSGLDLTAEWKH 198
+ +N+C+ D ED + K++G HGGCG QP IR++GL+L A++K
Sbjct: 58 SQKQNVCQA--------DSLEDEDDPNAKEKGGKIRHGGCGNAQPAIRKAGLELWAQYKP 109
Query: 199 VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQ 252
D +E+ +P + Q + LD EW +
Sbjct: 110 RKGDDEEETVPEKSQIWPAQALQIFQHLTDETLDSLGMNLDFARPEWMILQSLPVPPPPV 169
Query: 253 EKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 170 RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATY 229
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+
Sbjct: 230 MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289
Query: 370 VGVPRSIAQNMTFPEIVTPFNM 391
VGVPRSIA+ +T+PE VTPFN+
Sbjct: 290 VGVPRSIARTLTYPESVTPFNI 311
>gi|320101549|ref|YP_004177141.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus mucosus DSM
2162]
gi|319753901|gb|ADV65659.1| DNA-directed RNA polymerase, subunit A' [Desulfurococcus mucosus
DSM 2162]
Length = 885
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 150/398 (37%), Positives = 203/398 (51%), Gaps = 61/398 (15%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTCAG 71
+ +V+FGILSPDEIR+MSVT+ I E + G P GG+MD R G I+ C C
Sbjct: 9 ITRVKFGILSPDEIRKMSVTQ--IFSAEVYDNDGSPIDGGVMDRRLGAIEPGEACPICGN 66
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKL------------LVSPSHP 119
CPGHFGHI+LAKPV HVGFV + LR C C +L L+S H
Sbjct: 67 TRDSCPGHFGHIELAKPVIHVGFVKHILMYLRATCRNCGRLKIPEEERNEYLRLLSDLHE 126
Query: 120 KVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCG 179
++K + RR+A ++C + + K E P++ +Q G
Sbjct: 127 LGAPYLIKRFHEYIRRKASAAEVCPHCGVKQ-------YKVKLEKPHTFY--EQTEKGLV 177
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD 239
+ P+ R L+ KIP +L GG R D
Sbjct: 178 KLTPSEVRGRLE---------------KIPDDDVKLL-------GGDPR----------D 205
Query: 240 LTAEWKHVN----EDSQEKKIPLTGKGVLLDD-LTHKLADIIKCNNELIRNESSGAATHV 294
EW + + L G+ +D LTHKL DII+ NN L + GA + +
Sbjct: 206 ARPEWMVLTVLPVPPRSVRPSVLLETGIRSEDDLTHKLVDIIRTNNRLREHVEGGAPSAI 265
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I + ++LQ+HV T DN+ PG+P A +SGK LK I RLKGKEGR R NL GKRVDFS
Sbjct: 266 IEDEWELLQYHVTTYFDNEAPGIPVAKHRSGKTLKGIAQRLKGKEGRFRNNLRGKRVDFS 325
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ARTV++PDP+L I++VGVP +A+ +T PE VTP+N++
Sbjct: 326 ARTVVSPDPSLSINEVGVPEDVARILTVPERVTPWNIE 363
>gi|157741580|gb|ABV69495.1| RNA polymerase II largest subunit, partial [Verrucaria
hochstetteri]
Length = 999
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 180/322 (55%), Gaps = 24/322 (7%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S V ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKALDSEDLRYAVSVRDR---KKRFDLIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQG----HGGCGRYQPNIRRSGLDLTAEWKH 198
+ +N+C+ D ED + K++G HGGCG QP IR++GL+L A++K
Sbjct: 58 SQKQNVCQA--------DSLEDEDDPNAKEKGGKIRHGGCGNAQPAIRKAGLELWAQYKP 109
Query: 199 VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQ 252
D +E+ +P + Q + LD EW +
Sbjct: 110 RKGDDEEETVPEKSQIWPAQALQIFQHLTDETLDSLGMNLDFARPEWMILQSLPVPPPPV 169
Query: 253 EKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 170 RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATY 229
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+
Sbjct: 230 MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289
Query: 370 VGVPRSIAQNMTFPEIVTPFNM 391
VGVPRSIA+ +T+PE VTPFN+
Sbjct: 290 VGVPRSIARTLTYPESVTPFNI 311
>gi|123979358|gb|ABM81504.1| RNA polymerase II largest subunit [Thelotrema lepadinum]
Length = 366
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 135/316 (42%), Positives = 182/316 (57%), Gaps = 31/316 (9%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+L P + + G +RR ++++CKGK +CE
Sbjct: 1 FMTKIKKLLETVCHNCGKILSDDHDPAFAEALRFRDG--KRRFDAVWNVCKGKMMCESNP 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDS-----QEKKI 208
N+D +D + + K HGGCG QP +RR GL L WK D Q +
Sbjct: 59 P---NED--DDMDKAKAPKHDHGGCGNTQPTVRRKGLTLMGTWKAQKGDDEIEGQQNETK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRYQP-NIRRSGLD---LTAEW-----KHVNEDSQEKKIPLT 259
P+T + + R +I+ GL EW V I +
Sbjct: 114 PIT-------PRMAYDIFRRISTEDIKTMGLSNDYARPEWMIVTVLPVPPPPVRPSISVD 166
Query: 260 GKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
G G + DDLT+KL DII+ N + R E G+ HV+ E ++LQFHVAT DND+ G
Sbjct: 167 GSGQGMQSEDDLTYKLGDIIRANGNVRRCEMDGSPQHVVTEFEQLLQFHVATYMDNDIAG 226
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 227 QPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 286
Query: 377 AQNMTFPEIVTPFNMD 392
A+ +T+PE VTP+N++
Sbjct: 287 ARTLTYPENVTPYNIN 302
>gi|119872216|ref|YP_930223.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum islandicum DSM
4184]
gi|119673624|gb|ABL87880.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum islandicum DSM
4184]
Length = 884
Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 149/404 (36%), Positives = 206/404 (50%), Gaps = 65/404 (16%)
Query: 9 PLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQ 67
P + +K ++FGILSP+ IR+ SV E + E EGG P GG+ D R GV + +RC+
Sbjct: 11 PRKVIKSIKFGILSPEMIRKYSVME--VTTSEVYDEGGLPVRGGVADRRLGVAEPGARCE 68
Query: 68 TCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH-PKVRDVVL 126
TC CPGHFGHI+L KPV HVGF ILR C C ++++ + R+ +
Sbjct: 69 TCGQTHDVCPGHFGHIELVKPVIHVGFARIIYDILRTTCPNCGRIMLKDEEIQRYRERLT 128
Query: 127 KTKGQSRRRQAFIYDLCKGKNICEGGDEMDI-------NKDGAEDPNSLQNKKQGHGGCG 179
K KG+ R +++ + K + M NK E P + + G
Sbjct: 129 KLKGKWRLLALNLHEKIRKK----ASERMTCPHCGYKRNKIRFERPYYFYEETE-EGALV 183
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD 239
R P R L K NED + I P++ R
Sbjct: 184 RLDPETLRDRLA-----KIPNEDLELLGI---------------------NPSVARP--- 214
Query: 240 LTAEWK----------HVNEDSQEKKIPLTGKGVLLDD-LTHKLADIIKCNNELIRNESS 288
EW HV Q + GV +D LTHKL DII+ N +L +
Sbjct: 215 ---EWAILKVLPVPPPHVRPSIQLE------SGVRSEDDLTHKLVDIIRMNEKLKIAIET 265
Query: 289 GAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMG 348
GA T+V+ +LQ+H+AT DN++PG+P A + G+PLK I RLKGKEGR RG+L G
Sbjct: 266 GAPTNVVDNLWDLLQYHIATYFDNELPGIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSG 325
Query: 349 KRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
KRV+FSARTVI+PDP++ I++VGVP +A+ +T PE VTP+N+D
Sbjct: 326 KRVNFSARTVISPDPHISINEVGVPYDVAKILTVPERVTPWNVD 369
>gi|284162089|ref|YP_003400712.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus profundus DSM
5631]
gi|284012086|gb|ADB58039.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus profundus DSM
5631]
Length = 871
Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 153/395 (38%), Positives = 209/395 (52%), Gaps = 61/395 (15%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTCAG 71
+ ++F +LSP EIRRMSV + I ET + G P GGLMDPR GVID RC+TC G
Sbjct: 6 ISAIRFEVLSPQEIRRMSVAK--IVSAETYDDDGFPIEGGLMDPRLGVIDPGLRCRTCGG 63
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQ 131
ECPGHFGHI+LA PV HVG+ K+L C C +L + KVRD L +
Sbjct: 64 KAGECPGHFGHIELAAPVIHVGYAKLIAKLLNATCRECGRLRLPD---KVRDKFLD---E 117
Query: 132 SRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLD 191
RR+ G D +I KD ++ KK H G + +
Sbjct: 118 IERRKEL------------GQDYDEIIKDVYRRAKAV--KKCPHCGAEAVEVKFEKPTFY 163
Query: 192 LTAEWKHVNEDSQE--KKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKH 246
E K D +E +KIP VL G+D A EW
Sbjct: 164 YIDEHKLTPLDVREWLEKIPDDDLPVL--------------------GIDPKACRPEWLV 203
Query: 247 VNEDSQEKKIPLTGKGVLL--------DDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
+ + P+T + ++ DDLTHKL DII+ N + N+ +GA H+I E+
Sbjct: 204 I---TVLPVPPVTVRPSIILETGQRSEDDLTHKLVDIIRINQRFLENKEAGAP-HLILED 259
Query: 299 I-KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
+ ++LQ+HV T +N++ G+P A +SG+PLK + RLKGKEGR RG+L GKRV+FSART
Sbjct: 260 LWELLQYHVTTYINNEVSGIPPARHRSGRPLKTLAQRLKGKEGRFRGSLSGKRVNFSART 319
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
VI+PDP + I++VGVP+ IA+ +T P VT N++
Sbjct: 320 VISPDPCISINEVGVPKEIAEELTVPIYVTERNIE 354
>gi|157741616|gb|ABV69513.1| RNA polymerase II largest subunit, partial [Verrucaria viridula]
Length = 999
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 178/321 (55%), Gaps = 22/321 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K S + ++ ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKTKAVDSEDLRYALTVRN---PKKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
+ +N+C+ D EDP + + K GHGGCG QP IRRSGL+L A++K
Sbjct: 58 SQKQNVCQADSPED-----EEDPMAKEKSGKVGHGGCGNAQPQIRRSGLELWAQYKPRKG 112
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQE 253
D E+ +P K + + + GL L EW +
Sbjct: 113 DDDEETVP--EKSQIWPAQALEVFQHLTDETLDTLGLSLDFARPEWMILQSLPVPPPPVR 170
Query: 254 KKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 171 PSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYM 230
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+V
Sbjct: 231 DNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEV 290
Query: 371 GVPRSIAQNMTFPEIVTPFNM 391
GVPRSIA+ +T+PE VT FN+
Sbjct: 291 GVPRSIARTLTYPETVTRFNI 311
>gi|157741544|gb|ABV69477.1| RNA polymerase II largest subunit, partial [Staurothele fissa]
Length = 999
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 131/319 (41%), Positives = 178/319 (55%), Gaps = 16/319 (5%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K KIL VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKILETVCHNCGKIKAVDSEDLRYALSVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNED 202
+ +N+C+ D + GA+D + K HGGCG QP IR++GL+L A++K D
Sbjct: 58 SQKQNVCQADAPEDGDDQGAKD----KGVKPRHGGCGNAQPVIRKTGLELWAQYKARKVD 113
Query: 203 SQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQEKKI 256
+E+ +P + Q +D EW + I
Sbjct: 114 DEEESVPEKSQIWXAQALQVFQHLTDETLETLGLSVDFARPEWMILQSLPVPPPPVRPSI 173
Query: 257 PLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDND 313
+ G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DND
Sbjct: 174 SVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDND 233
Query: 314 MPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVP 373
+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVP
Sbjct: 234 IANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVP 293
Query: 374 RSIAQNMTFPEIVTPFNMD 392
RSIA+ +T+PE VT FN +
Sbjct: 294 RSIARTLTYPETVTRFNAE 312
>gi|120561227|gb|ABM26999.1| RNA polymerase II largest subunit, partial [Catenaria anguillulae]
Length = 1020
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 137/332 (41%), Positives = 190/332 (57%), Gaps = 31/332 (9%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV-LKTKGQSRRRQAFIY 140
HI+LA PV+H+ F+ + KIL VCF+CS+L P+ + + V ++ + + +R ++
Sbjct: 1 HIELACPVYHISFLPRVKKILEAVCFHCSRLRADPNAEEFKKVSKIRNRNERFKR---MH 57
Query: 141 DLCKGKNICE-GGDEMDINKDGAEDPNSLQNKKQGHG-----GCGRYQPNIRRSGLDLTA 194
+LCK C+ + + S Q G GCG+ QP IR+ L L+A
Sbjct: 58 ELCKKVTTCKVDALGDGEGGELGDVYGSRAAHMQDPGRIPLLGCGKKQPQIRKKQLTLSA 117
Query: 195 EWKHV-----NEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD---LTAEWK 245
+WK + + +E K LT VL + KK C GLD EW
Sbjct: 118 QWKGAAAKDDDGEIKEGKHDLTPAEVLQILKKISDADCLHL-------GLDPEYARPEWM 170
Query: 246 HVNEDSQEK-----KIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
+ I + G DDLT+KL DI+K N L + + GA H++ E+
Sbjct: 171 LLTVFPVPPPPVRPSILMDGTSRGEDDLTYKLCDIVKANAHLKKAQEQGATGHMMREHED 230
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
+LQFH AT DN++ G+PRA Q+SG+P+KAI++RLKGKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 231 LLQFHCATFVDNEISGMPRANQRSGRPIKAIRSRLKGKEGRLRGNLMGKRVDFSARTVIT 290
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPNL IDQVGVPRSIA N+T+PE+VT N++
Sbjct: 291 GDPNLSIDQVGVPRSIASNLTYPEMVTRHNVN 322
>gi|394998781|gb|AFN44309.1| RNA polymerase II largest subunit, partial [Xanthomendoza fallax]
Length = 355
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 135/313 (43%), Positives = 182/313 (58%), Gaps = 28/313 (8%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+LV S+P + L+++ +RR I+ LCK K ICE
Sbjct: 1 FLGKIKKLLETVCHNCGKILVDESNPAFLEA-LRSR-DPKRRFDMIWRLCKPKLICETSI 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
+D E + + HGGCG QP +RR L LT WK +E Q +K
Sbjct: 59 PLD-----DEHSEKTKEPRHDHGGCGNLQPEVRREALKLTGTWKAQKGDDEHEGQQAEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTG 260
P+T + + LN + +I+ GL EW + I + G
Sbjct: 114 PITPQ-MALNVFRNIS-----TEDIKTMGLSNDYARPEWMIITVLPVPPPPVRPSISMDG 167
Query: 261 KGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
+ DDLT+KL DII+ N + R + G+ H+I E +LQFHVAT DN++ GLP
Sbjct: 168 GAGMRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLIQEFENLLQFHVATYMDNNIAGLP 227
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL D+VGVPRSIA+
Sbjct: 228 QALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSXDEVGVPRSIAR 287
Query: 379 NMTFPEIVTPFNM 391
+T+PE VTP+N+
Sbjct: 288 TLTYPETVTPYNI 300
>gi|157741506|gb|ABV69458.1| RNA polymerase II largest subunit, partial [Neocatapyrenium
rhizinosum]
Length = 999
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 133/319 (41%), Positives = 177/319 (55%), Gaps = 18/319 (5%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S + ++ ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSEDLRYALTVRN---PKKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQ-NKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
+ +N C+ D EDP + + + K GHGGCG QP IRRSGL+L A++K
Sbjct: 58 SQKQNNCQADSPED-----EEDPMAREKSSKVGHGGCGNAQPQIRRSGLELWAQYKPRKG 112
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQEKK 255
D E+ +P + + + LD EW +
Sbjct: 113 DDDEETVPEKSQIWPAQALEVFQHLSDETLDTLGLSLDFARPEWMILQSLPVPPPPVRPS 172
Query: 256 IPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDN 312
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DN
Sbjct: 173 ISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDN 232
Query: 313 DMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGV 372
D+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGV
Sbjct: 233 DIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGV 292
Query: 373 PRSIAQNMTFPEIVTPFNM 391
PRSIA+ +T+PE VT FN+
Sbjct: 293 PRSIARTLTYPETVTRFNI 311
>gi|268323372|emb|CBH36960.1| probable DNA-directed RNA polymerase, subunit A' [uncultured
archaeon]
Length = 889
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 149/391 (38%), Positives = 210/391 (53%), Gaps = 42/391 (10%)
Query: 10 LRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQT 68
L+ +K ++FG+LSP EIR+MS ++ I P+T E G P GL++ R GVID RC+T
Sbjct: 3 LKRIKGIKFGLLSPKEIRKMSASK--IITPDTYGEDGFPIELGLVNQRIGVIDPGLRCKT 60
Query: 69 CAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKT 128
C G M ECPGHFGHI+LA P+ HVG+ +IL C C K+L+ + R L
Sbjct: 61 CGGRMGECPGHFGHIELAAPIIHVGYAKMIYRILAATCRRCGKVLLGE---EARAKFLDG 117
Query: 129 KGQSRRRQAFIYDLCK------GKN-ICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRY 181
Q + +QA + D+ K KN +C DE I K D K G+ +
Sbjct: 118 IEQQKEKQADVGDVVKLVFKEAAKNDVCPFCDE--IQKRIKYD------KPTGYIEIDKE 169
Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
R D+ + + +D IPL G ++ K N R + +T
Sbjct: 170 DKERRLMPTDVRERLEKIPDDD----IPLFG----MDPK-----------NARPEWMIIT 210
Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V + I L DDLTHKL DII+ N + N +GA +I + ++
Sbjct: 211 V--LPVPPVTARPSITLESGQRSEDDLTHKLVDIIRINQRFMENRDAGAPQLIIEDLWEL 268
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ+HV+T +N++P +P A +SG+PLK + RLKGKEGR RG+L GKRV+FSARTVI+P
Sbjct: 269 LQYHVSTYFNNEIPSIPPARHRSGRPLKTMTQRLKGKEGRFRGSLSGKRVNFSARTVISP 328
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DP + ID+VGVP+ IA+ +T VT N++
Sbjct: 329 DPEIEIDEVGVPKDIAKELTINVNVTERNLE 359
>gi|384253754|gb|EIE27228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coccomyxa subellipsoidea C-169]
Length = 1566
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 133/347 (38%), Positives = 191/347 (55%), Gaps = 48/347 (13%)
Query: 60 IDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHP 119
+DR+ +C T N + PG+FGHI+LAKPVFH+G+ + +++LRCV ++ SKLLV P
Sbjct: 1 MDRAIKCTTDGANQQDSPGYFGHIELAKPVFHIGWTKELMRVLRCVSYHSSKLLVDKDDP 60
Query: 120 KVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCG 179
K + V+ G++R R + +C K E + GA P + + +
Sbjct: 61 KFKQVMRIKNGEARSRA--LVAVCGSKRFDE--------ETGAPQP-AYKFEGLLRIMAE 109
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGR--YQPNIRRSG 237
R + +D+ AE + E + EK + K+ C Y P R
Sbjct: 110 RIFSSADDEDIDMGAEVERRQEITAEKAHEIL-------KRISDEDCIALGYNPKYAR-- 160
Query: 238 LDLTAEWKHVNE--------------DSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELI 283
+W + DS +++P DDLTHKLA+II+ NN L
Sbjct: 161 ----PDWLVMTVFPVPPPPVRPSVMMDSSARQVP--------DDLTHKLAEIIRHNNTLR 208
Query: 284 RNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIR 343
+ E +GA H+I + +++LQ VAT DN PG+P + Q+SG+ +K+I RLKGKEGR+R
Sbjct: 209 KAEENGAPQHIIRQYVEVLQHDVATYIDNTKPGIPVSQQRSGRAIKSISQRLKGKEGRVR 268
Query: 344 GNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN 390
GNLMGKRVDFSARTVI+ DPN+ ID++GVP SIA N+T+PE VTP N
Sbjct: 269 GNLMGKRVDFSARTVISGDPNISIDELGVPWSIALNLTYPETVTPHN 315
>gi|157741558|gb|ABV69484.1| RNA polymerase II largest subunit, partial [Thelidium pyrenophorum]
Length = 999
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 132/319 (41%), Positives = 179/319 (56%), Gaps = 18/319 (5%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S V ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSEDLRYAVSVRDR---KKRFDLIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
+ +++C+ D +DPN+ + K HGGCG QP IR++GL+L A++K
Sbjct: 58 SQKQHVCQADSPED-----EDDPNAKEKGGKLRHGGCGNAQPVIRKAGLELWAQYKPRKG 112
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQEKK 255
D +E+ +P + Q LD EW +
Sbjct: 113 DDEEETVPEKSQIWPAQALQVFQHLTDETLETLGMNLDFARPEWMILQSLPVPPPPVRPS 172
Query: 256 IPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDN 312
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DN
Sbjct: 173 ISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATYMDN 232
Query: 313 DMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGV 372
D+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGV
Sbjct: 233 DIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGV 292
Query: 373 PRSIAQNMTFPEIVTPFNM 391
PRSIA+ +T+PE VTPFN+
Sbjct: 293 PRSIARTLTYPETVTPFNI 311
>gi|293630650|gb|ADE58969.1| RNA polymerase II largest subunit [Dothideomycetes sp. TRN 42]
Length = 316
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 136/312 (43%), Positives = 177/312 (56%), Gaps = 44/312 (14%)
Query: 106 CFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDP 165
C C KLL +P + + K + RR +A ++ +CK K ICE D D D DP
Sbjct: 3 CHNCGKLLDDERNPAFKQAI-KIRDAKRRFEA-VHKICKAKMICEP-DAQDDGNDDFSDP 59
Query: 166 NSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK---HVNEDSQEK---KIPLTGKGVLLNK 219
+ ++ GHGGCG QP +R+ L LT WK E+ EK K P+T + L
Sbjct: 60 KAKMKQQGGHGGCGNIQPEVRKDALKLTGTWKLPKGAEEEGDEKMPEKRPITPQAAL--- 116
Query: 220 KQGHGGCGRYQPNIRR--SGLDLTA----------EWK-----HVNEDSQEKKIPLTGKG 262
N+ R S DLT EW V + I + G
Sbjct: 117 ------------NVFRNISDYDLTCLGLNCDYARPEWMVMTVMPVPPPAVRPSISVDGTS 164
Query: 263 VLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPR 319
+ DDLT+KL+DII+ N+ + R E G+ HV+ E I +LQ+HVAT DND+ GLP+
Sbjct: 165 QGMRSEDDLTYKLSDIIRANSNVKRCEQEGSPQHVVDEFISLLQYHVATYMDNDIAGLPK 224
Query: 320 AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 379
A QKSG+P+KAI+ARLK KEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 225 AQQKSGRPVKAIRARLKSKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 284
Query: 380 MTFPEIVTPFNM 391
+TFPE V +N+
Sbjct: 285 LTFPERVNAYNI 296
>gi|157741556|gb|ABV69483.1| RNA polymerase II largest subunit, partial [Thelidium papulare]
Length = 999
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 132/319 (41%), Positives = 179/319 (56%), Gaps = 18/319 (5%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S V ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSEDLRYAVSVRDR---KKRFDLIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
+ +++C+ D +DPN+ + K HGGCG QP IR++GL+L A++K
Sbjct: 58 SQKQHVCQADSPED-----EDDPNAKEKGGKLRHGGCGNAQPVIRKAGLELWAQYKPRKG 112
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQEKK 255
D +E+ +P + Q LD EW +
Sbjct: 113 DDEEETVPEKSQIWPAQALQVFQHLTDETLETLGMNLDFARPEWMILQSLPVPPPPVRPS 172
Query: 256 IPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDN 312
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DN
Sbjct: 173 ISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATYMDN 232
Query: 313 DMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGV 372
D+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGV
Sbjct: 233 DIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGV 292
Query: 373 PRSIAQNMTFPEIVTPFNM 391
PRSIA+ +T+PE VTPFN+
Sbjct: 293 PRSIARTLTYPETVTPFNI 311
>gi|119514064|gb|ABL75805.1| RNA polymerase II largest subunit [Tephromela atra]
Length = 358
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 142/318 (44%), Positives = 185/318 (58%), Gaps = 35/318 (11%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG- 152
F K K+L VC C K+LV S+P + L+ + RR A I+ LCK K ICE
Sbjct: 1 FFNKIKKVLETVCHNCGKILVDESNPMFVNA-LRHRDPKRRFDA-IHRLCKPKLICETDP 58
Query: 153 --DEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK----HVNEDS-QE 205
D+M++ K+ KK HGGCG QP IRR GL L WK +ED Q
Sbjct: 59 PLDDMELLKEAT--------KKPSHGGCGNIQPEIRREGLRLVGTWKVPKSEEDEDGRQT 110
Query: 206 KKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEW-----KHVNEDSQEKKIP 257
+K P++ + L + +IR+ GL EW V I
Sbjct: 111 EKRPISPQMALDVFRSISA------EHIRKMGLSNDYARPEWMIVTVLPVPPPPVRPSIS 164
Query: 258 LTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM 314
+ G G + DDLT KL DII+ N+ + R G+ HV+ E ++LQFHVAT DND+
Sbjct: 165 IDGTGQGMRGEDDLTFKLGDIIRANSNVRRCLQEGSPRHVLDEFEQLLQFHVATYMDNDI 224
Query: 315 PGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVP
Sbjct: 225 AGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPI 284
Query: 375 SIAQNMTFPEIVTPFNMD 392
SIA+ +T+PE VTPFN++
Sbjct: 285 SIARVLTYPETVTPFNLE 302
>gi|111278791|gb|ABH09093.1| RNA polymerase II largest subunit [Staurothele frustulenta]
Length = 1010
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 183/322 (56%), Gaps = 20/322 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKL-LVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
I LA PV+H GF+ K KIL VC C K+ V S +R L + + +R + I+
Sbjct: 2 IKLAVPVYHYGFLGKVKKILETVCHNCGKIKAVDVSSEDLR-YALSVRDRKKRFE-LIWR 59
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
L + +N+C+ D + GA+D + K HGGCG QP IR++GL+L A++K
Sbjct: 60 LSQKQNVCQADAPEDGDDQGAKD----KGVKTRHGGCGNAQPVIRKTGLELWAQYKPRKG 115
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQE 253
D +E+ +P K + + + GL + EW +
Sbjct: 116 DDEEESVP--EKSQIWPAQALQVFQHLTDETLETLGLSVDFARPEWMILQSLPVPPPPVR 173
Query: 254 KKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 174 PSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYM 233
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+V
Sbjct: 234 DNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEV 293
Query: 371 GVPRSIAQNMTFPEIVTPFNMD 392
GVPRSIA+ +T+PE VT FN +
Sbjct: 294 GVPRSIARTLTYPETVTRFNAE 315
>gi|395646424|ref|ZP_10434284.1| DNA-directed RNA polymerase subunit A' [Methanofollis liminatans
DSM 4140]
gi|395443164|gb|EJG07921.1| DNA-directed RNA polymerase subunit A' [Methanofollis liminatans
DSM 4140]
Length = 880
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 144/393 (36%), Positives = 206/393 (52%), Gaps = 56/393 (14%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTCAG 71
+ K++FG+LSP EIR+MSV + I + +T + G P GLMD GVID RC+TCA
Sbjct: 7 IGKIEFGLLSPKEIRQMSVRK--IIWADTYDDDGYPYSQGLMDLHLGVIDPGMRCKTCAQ 64
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQ 131
++CPGHFGHI+LAKPV HVG+ K+LR C C +LL+SP D + K G
Sbjct: 65 KASDCPGHFGHIELAKPVIHVGYTRLIRKLLRVSCRSCGRLLLSP------DEITKIVGT 118
Query: 132 SRRRQAFIYDLCKGKNICE-------GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPN 184
DL K+I + G ++ +N + + + ++ G G + P
Sbjct: 119 EEDESG---DLVTEKDIKKERVCPYCGEQQLKVNFEKPTTFSEVVVEENGKKGEHKLTP- 174
Query: 185 IRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEW 244
D+ A + + +D + L G P++ R EW
Sbjct: 175 -----ADIRARLERIPDDD----LRLLG----------------INPDVAR------PEW 203
Query: 245 K-----HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENI 299
V + I L DDLTHKL DII+ N N+ +GA +I +
Sbjct: 204 TILTVLPVPPVTMRPSIILENGQRSEDDLTHKLVDIIRINQRFKENQDAGAPQLIIEDLW 263
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
++LQ+HV T DN++ G P A +SG+PLK + RLKGK+GR RG+L GKRV+FSARTVI
Sbjct: 264 ELLQYHVTTYMDNEVAGCPPARHRSGRPLKTLSQRLKGKDGRFRGSLSGKRVNFSARTVI 323
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+PDP L +++VGVP +IA M+ P VT +N++
Sbjct: 324 SPDPFLDVNEVGVPLAIANEMSVPVRVTNYNLE 356
>gi|341859008|gb|AEK97414.1| ribosomal polymerase II largest subunit [Beauveria vermiconia]
Length = 954
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 181/310 (58%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEE 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVTSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|341858884|gb|AEK97352.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
Length = 954
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 181/310 (58%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEE 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVTSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|341859004|gb|AEK97412.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
Length = 954
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 181/310 (58%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEE 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVTSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|341858982|gb|AEK97401.1| ribosomal polymerase II largest subunit [Beauveria sungii]
gi|341858984|gb|AEK97402.1| ribosomal polymerase II largest subunit [Beauveria sungii]
gi|341858986|gb|AEK97403.1| ribosomal polymerase II largest subunit [Beauveria sungii]
gi|341858988|gb|AEK97404.1| ribosomal polymerase II largest subunit [Beauveria sungii]
gi|341858992|gb|AEK97406.1| ribosomal polymerase II largest subunit [Beauveria sungii]
gi|341858994|gb|AEK97407.1| ribosomal polymerase II largest subunit [Beauveria sungii]
Length = 954
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 181/310 (58%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEE 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVTSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|341858972|gb|AEK97396.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
gi|341858976|gb|AEK97398.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
gi|341858978|gb|AEK97399.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
gi|341858980|gb|AEK97400.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
Length = 954
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 181/310 (58%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEE 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVTSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|341858880|gb|AEK97350.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858882|gb|AEK97351.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858886|gb|AEK97353.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858888|gb|AEK97354.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858890|gb|AEK97355.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858892|gb|AEK97356.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858894|gb|AEK97357.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858896|gb|AEK97358.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858898|gb|AEK97359.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858900|gb|AEK97360.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858902|gb|AEK97361.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858904|gb|AEK97362.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858906|gb|AEK97363.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858908|gb|AEK97364.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858910|gb|AEK97365.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858912|gb|AEK97366.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858914|gb|AEK97367.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858916|gb|AEK97368.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858918|gb|AEK97369.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858920|gb|AEK97370.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858922|gb|AEK97371.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858924|gb|AEK97372.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858926|gb|AEK97373.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858930|gb|AEK97375.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858932|gb|AEK97376.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858942|gb|AEK97381.1| ribosomal polymerase II largest subunit [Beauveria australis]
gi|341858944|gb|AEK97382.1| ribosomal polymerase II largest subunit [Beauveria australis]
Length = 954
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 181/310 (58%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEE 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVTSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|341858974|gb|AEK97397.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
Length = 954
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 181/310 (58%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEE 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVTSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|341858996|gb|AEK97408.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
gi|341858998|gb|AEK97409.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
Length = 954
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 181/310 (58%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEE 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVTSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|341858958|gb|AEK97389.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
Length = 954
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 181/310 (58%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEE 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVTSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|341859000|gb|AEK97410.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
gi|341859002|gb|AEK97411.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
gi|341859006|gb|AEK97413.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
Length = 954
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 181/310 (58%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEE 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVTSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|341858990|gb|AEK97405.1| ribosomal polymerase II largest subunit [Beauveria sungii]
Length = 954
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 181/310 (58%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEE 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVTSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|341858970|gb|AEK97395.1| ribosomal polymerase II largest subunit [Beauveria kipukae]
Length = 954
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 181/310 (58%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 FIKKVEKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEE 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVTSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|341858968|gb|AEK97394.1| ribosomal polymerase II largest subunit [Beauveria varroae]
Length = 954
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 181/310 (58%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEE 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVTSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|341858964|gb|AEK97392.1| ribosomal polymerase II largest subunit [Beauveria varroae]
gi|341858966|gb|AEK97393.1| ribosomal polymerase II largest subunit [Beauveria varroae]
Length = 954
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 181/310 (58%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEE 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVTSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|341858946|gb|AEK97383.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858948|gb|AEK97384.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858950|gb|AEK97385.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858954|gb|AEK97387.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858956|gb|AEK97388.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858960|gb|AEK97390.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858962|gb|AEK97391.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
Length = 954
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 181/310 (58%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEE 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVTSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|341859010|gb|AEK97415.1| ribosomal polymerase II largest subunit [Beauveria malawiensis]
gi|341859012|gb|AEK97416.1| ribosomal polymerase II largest subunit [Beauveria malawiensis]
Length = 954
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 181/310 (58%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEE 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKDEEFAPGVKNVVIEGHGGCGNMQPQVRQAALQLKAAFEITSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|341858940|gb|AEK97380.1| ribosomal polymerase II largest subunit [Beauveria australis]
Length = 954
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 181/310 (58%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEE 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVTSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|341858928|gb|AEK97374.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
Length = 954
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 181/310 (58%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEE 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVTSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|328709688|ref|XP_003244040.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 382
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/117 (86%), Positives = 108/117 (92%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI 60
MA +DSKAP+R VK+VQFGILS DE RRMSVTEGGI+F ETMEGGRPKLGGLMDPRQGVI
Sbjct: 1 MAASDSKAPIRTVKRVQFGILSADECRRMSVTEGGIRFAETMEGGRPKLGGLMDPRQGVI 60
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPS 117
DR SRCQTCAGNMTEC GHFGHI+LAKPVFH+GF+TK I ILRCVCFYCSKLLVSPS
Sbjct: 61 DRVSRCQTCAGNMTECCGHFGHIELAKPVFHIGFLTKAITILRCVCFYCSKLLVSPS 117
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/136 (74%), Positives = 111/136 (81%), Gaps = 2/136 (1%)
Query: 257 PLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
P+ G L +T C+ L+ SGA TH+IAENI+MLQ+HVATL DND PG
Sbjct: 88 PVFHIGFLTKAITILRCVCFYCSKLLV--SPSGATTHIIAENIRMLQYHVATLVDNDSPG 145
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
LPRAM KSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID+VGVPR+I
Sbjct: 146 LPRAMHKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDEVGVPRTI 205
Query: 377 AQNMTFPEIVTPFNMD 392
AQNMTFPEIVTPFN+D
Sbjct: 206 AQNMTFPEIVTPFNID 221
>gi|157741538|gb|ABV69474.1| RNA polymerase II largest subunit, partial [Staurothele areolata]
Length = 999
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 132/321 (41%), Positives = 181/321 (56%), Gaps = 20/321 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K KIL VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKILETVCHNCGKIKAVDSEDLRYALSVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNED 202
+ +N+C+ D + GA+D + K HGGCG QP IR++GL+L A++K D
Sbjct: 58 SQKQNVCQADAPEDGDDQGAKD----KGVKTRHGGCGNAQPVIRKTGLELWAQYKPRKGD 113
Query: 203 SQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQEK 254
+E+ +P K + + + GL + EW +
Sbjct: 114 DEEESVP--EKSQIWPAQALQVFQHLTDETLETLGLSVDFARPEWMILQSLPVPPPPVRP 171
Query: 255 KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT D
Sbjct: 172 SISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMD 231
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
ND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VG
Sbjct: 232 NDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVG 291
Query: 372 VPRSIAQNMTFPEIVTPFNMD 392
VPRSIA+ +T+PE VT FN +
Sbjct: 292 VPRSIARTLTYPETVTRFNAE 312
>gi|149794937|gb|ABR31764.1| RNA polymerase II largest subunit [Exophiala salmonis]
Length = 371
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 178/326 (54%), Gaps = 31/326 (9%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHP-----KVRDVVLKTKGQSRRRQA 137
I LA PV+H GF+ K KIL VC C K+ S K+RD +RR
Sbjct: 1 IKLATPVYHYGFMGKVKKILETVCHNCGKIKALDSEELKHAFKIRD--------RKRRFD 52
Query: 138 FIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK 197
++ L K + ICE D + + P ++ HGGCG QP IRR+GL L A WK
Sbjct: 53 AVWRLSKPRLICEADPPEDAEQQPLKGPAPIK-----HGGCGNAQPEIRRTGLQLWATWK 107
Query: 198 HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVN-----E 249
+ +E P K + + + GL+L EW ++
Sbjct: 108 ARKGEDEEDTTP--DKKRIFPTEVLRTFRTLSDDTLELMGLNLDYARPEWMILSALPVPP 165
Query: 250 DSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHV 306
I + G G DDLT KL DII+ N ++R E G H+ + +LQ+H+
Sbjct: 166 PPVRPSISVDGSGQGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLQDLLQYHI 225
Query: 307 ATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLR 366
AT DN++ GL +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL
Sbjct: 226 ATYMDNEIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLS 285
Query: 367 IDQVGVPRSIAQNMTFPEIVTPFNMD 392
+D+VGVPRSIA+ +T+PE VTPFN+D
Sbjct: 286 LDEVGVPRSIARTLTYPETVTPFNLD 311
>gi|157741630|gb|ABV69520.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
Length = 999
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 134/322 (41%), Positives = 182/322 (56%), Gaps = 24/322 (7%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K KIL VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKILETVCHNCGKIKALDSEELRYALSVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNK--KQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
+N+C+ +D E+PN L+ K + HGGCG QP IR++GL+L A++K
Sbjct: 58 SSKQNVCQADPPID-----EEEPN-LKEKAGRIKHGGCGNAQPAIRKTGLELWAQYKPRK 111
Query: 201 EDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQ 252
D +E+ +P K + + + GL L EW +
Sbjct: 112 GDEEEETVP--EKSQIWPAQALQIFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPV 169
Query: 253 EKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 170 RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPEHIAKELQALLQYHVATY 229
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+
Sbjct: 230 MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITSDPNLSLDE 289
Query: 370 VGVPRSIAQNMTFPEIVTPFNM 391
VGVPRSIA+ +T+PE VT FN+
Sbjct: 290 VGVPRSIARTLTYPETVTRFNI 311
>gi|157741596|gb|ABV69503.1| RNA polymerase II largest subunit, partial [Wahlenbergiella mucosa]
Length = 999
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 135/325 (41%), Positives = 180/325 (55%), Gaps = 30/325 (9%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHP-----KVRDVVLKTKGQSRRRQA 137
I LA PV+H GF+ K KIL VC C K+ S VRD ++R
Sbjct: 1 IKLAVPVYHYGFLAKVKKILETVCHNCGKIKAVDSEELRYAHSVRD--------RKKRFE 52
Query: 138 FIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK 197
I+ L + +N+C+ D +DG + + K HGGCG QP IR+SGL+L A++K
Sbjct: 53 LIWRLSQKQNMCQA----DAPEDGDDGIVKEKAGKIKHGGCGNAQPAIRKSGLELWAQYK 108
Query: 198 HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVNE----- 249
D ++ +P K + + + GL+L EW +
Sbjct: 109 PRKGDDEDDFVP--EKSQIWPSQALQVFQHMSDETLETLGLNLDFARPEWMILQSLPVPP 166
Query: 250 DSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHV 306
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HV
Sbjct: 167 PPVRPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRVSAEGAPDHIAKELQALLQYHV 226
Query: 307 ATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLR 366
AT DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL
Sbjct: 227 ATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLS 286
Query: 367 IDQVGVPRSIAQNMTFPEIVTPFNM 391
+D+VGVPR+IA+N+T+PE VT FN+
Sbjct: 287 LDEVGVPRTIARNLTYPETVTKFNI 311
>gi|394998773|gb|AFN44305.1| RNA polymerase II largest subunit, partial [Teloschistes
chrysophthalmus]
Length = 355
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 131/316 (41%), Positives = 178/316 (56%), Gaps = 34/316 (10%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+LV S+P D + + +RR I+ LCK K +CE
Sbjct: 1 FINKIKKLLETVCHNCGKILVDESNPAFADALRQR--DPKRRFDTIWRLCKPKLVCEATP 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-------HVNEDSQEK 206
++ P+ + + HGGCG QP +RR L L WK H + +++K
Sbjct: 59 PQTDDQ-----PDRPREPRHDHGGCGNVQPEVRREALALNGTWKAQKGDDEHEGQPAEKK 113
Query: 207 KI-PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIP 257
I P V N +I++ GL EW + I
Sbjct: 114 PITPQMALSVFRNISTD---------DIKKMGLSNDYARPEWMIITVLPVPPPPVRPSIS 164
Query: 258 LTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+ G L DDLT+KL DII+ N + R + G+ H+ E +LQFHVAT DN++P
Sbjct: 165 MDGANGLRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLTQEFENLLQFHVATYMDNNIP 224
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
GL +A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRS
Sbjct: 225 GLGQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRS 284
Query: 376 IAQNMTFPEIVTPFNM 391
IA+ +T+PE VTP+N+
Sbjct: 285 IAKTLTYPETVTPYNI 300
>gi|341858938|gb|AEK97379.1| ribosomal polymerase II largest subunit [Beauveria asiatica]
Length = 954
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 181/310 (58%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEE 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKDEEFAPAVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEITSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|157741612|gb|ABV69511.1| RNA polymerase II largest subunit, partial [Verrucaria weddellii]
Length = 999
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 134/321 (41%), Positives = 178/321 (55%), Gaps = 22/321 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S + ++ ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVRKLLETVCHNCGKVKAVDSEDLRYALTVRN---PKKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
+ +N+C+ D +DP + K GHGGCG QP IRRSGL+L A++K
Sbjct: 58 SQKQNVCQADSPED-----EDDPMGKEKSGKVGHGGCGNAQPQIRRSGLELWAQYKPRKG 112
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQE 253
D E+ +P K + + + GL L EW +
Sbjct: 113 DDDEETVP--EKSQIWPAQALEVFQHLTDETLDTLGLSLDFARPEWMILQSLPVPPPPVR 170
Query: 254 KKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 171 PSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYM 230
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+V
Sbjct: 231 DNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEV 290
Query: 371 GVPRSIAQNMTFPEIVTPFNM 391
GVPRSIA+ +T+PE VT FN+
Sbjct: 291 GVPRSIARTLTYPETVTRFNI 311
>gi|157741618|gb|ABV69514.1| RNA polymerase II largest subunit, partial [Verrucula biatorinaria]
Length = 999
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 134/322 (41%), Positives = 182/322 (56%), Gaps = 24/322 (7%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K KIL VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKILETVCHNCGKIKALDSEELRYALSVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNK--KQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
+N+C+ +D E+PN L+ K + HGGCG QP IR++GL+L A++K
Sbjct: 58 SSKQNVCQADPPID-----EEEPN-LKEKAGRIKHGGCGNAQPAIRKTGLELWAQYKARK 111
Query: 201 EDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVNE-----DSQ 252
D +E+ +P K + + + GL L EW +
Sbjct: 112 GDEEEETVP--EKSQIWPAQALQIFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPV 169
Query: 253 EKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 170 RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPEHIAKELQALLQYHVATY 229
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+
Sbjct: 230 MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289
Query: 370 VGVPRSIAQNMTFPEIVTPFNM 391
VGVPRSIA+ +T+PE VT FN+
Sbjct: 290 VGVPRSIARTLTYPETVTRFNI 311
>gi|341859014|gb|AEK97417.1| ribosomal polymerase II largest subunit [Beauveria malawiensis]
Length = 954
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 129/316 (40%), Positives = 182/316 (57%), Gaps = 31/316 (9%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPK------VRDVVLKTKGQSRRRQAFIYDLCKGKN 147
F+ K K+L VC CSK+L S P+ +RD L+ K ++ +CK K
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHIRDPKLRFKR--------VWAVCKKKR 52
Query: 148 ICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKK 207
CE + D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K
Sbjct: 53 KCENEERQDKNKDEEFAPGVKNVVIEGHGGCGNMQPQVRQAALQLKAAFEITSEEGPKRK 112
Query: 208 IPLTGKGVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPL 258
+ V ++ + HG R + ++ GL+ EW + I +
Sbjct: 113 -----ETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISM 167
Query: 259 TGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
G G DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+
Sbjct: 168 DGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIA 227
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G PRA+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRS
Sbjct: 228 GQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRS 287
Query: 376 IAQNMTFPEIVTPFNM 391
IA+ +T+PE VTP+N+
Sbjct: 288 IARTLTYPETVTPYNI 303
>gi|157741542|gb|ABV69476.1| RNA polymerase II largest subunit, partial [Staurothele drummondii]
Length = 374
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 132/321 (41%), Positives = 181/321 (56%), Gaps = 20/321 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K KIL VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKILETVCHNCGKIKAVDSEDLRYALSVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNED 202
+ +N+C+ D + GA+D + K HGGCG QP IR++GL+L A++K D
Sbjct: 58 SQKQNVCQADAPEDGDDQGAKD----KGVKTRHGGCGNAQPVIRKTGLELWAQYKPRKGD 113
Query: 203 SQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQEK 254
+E+ +P K + + + GL + EW +
Sbjct: 114 DEEESVP--EKSQIWPAQALQVFQHLTDETLETLGLSVDFARPEWMILQSLPVPPPPVRP 171
Query: 255 KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT D
Sbjct: 172 SISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMD 231
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
ND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VG
Sbjct: 232 NDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVG 291
Query: 372 VPRSIAQNMTFPEIVTPFNMD 392
VPRSIA+ +T+PE VT FN +
Sbjct: 292 VPRSIARTLTYPETVTRFNAE 312
>gi|157741620|gb|ABV69515.1| RNA polymerase II largest subunit, partial [Verrucula arnoldaria]
Length = 999
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 134/322 (41%), Positives = 182/322 (56%), Gaps = 24/322 (7%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K KIL VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKILETVCHNCGKIKALDSEELRYALSVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNK--KQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
+N+C+ +D E+PN L+ K + HGGCG QP IR++GL+L A++K
Sbjct: 58 SSKQNVCQADPPID-----EEEPN-LKEKAGRIKHGGCGNAQPAIRKTGLELWAQYKPRK 111
Query: 201 EDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQ 252
D +E+ +P K + + + GL L EW +
Sbjct: 112 GDEEEETVP--EKSQIWPAQALQIFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPV 169
Query: 253 EKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 170 RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPEHIAKELQALLQYHVATY 229
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+
Sbjct: 230 MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289
Query: 370 VGVPRSIAQNMTFPEIVTPFNM 391
VGVPRSIA+ +T+PE VT FN+
Sbjct: 290 VGVPRSIARTLTYPETVTRFNI 311
>gi|157741622|gb|ABV69516.1| RNA polymerase II largest subunit, partial [Verrucula granulosaria]
Length = 999
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 132/321 (41%), Positives = 180/321 (56%), Gaps = 22/321 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K KIL VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKILETVCHNCGKIKALDSEELRYALSVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
+N+C+ +D E+PN + + HGGCG QP IR++GL+L A++K
Sbjct: 58 SSKQNVCQADPPID-----EEEPNVKEKAGRIKHGGCGNAQPAIRKTGLELWAQYKPRKG 112
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQE 253
D +E+ +P K + + + GL L EW +
Sbjct: 113 DEEEETVP--EKSQIWPAQALQIFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPVR 170
Query: 254 KKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 171 PSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPEHIAKELQALLQYHVATYM 230
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+V
Sbjct: 231 DNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEV 290
Query: 371 GVPRSIAQNMTFPEIVTPFNM 391
GVPRSIA+ +T+PE VT FN+
Sbjct: 291 GVPRSIARTLTYPETVTRFNI 311
>gi|157741624|gb|ABV69517.1| RNA polymerase II largest subunit, partial [Verrucula granulosaria]
Length = 987
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 132/321 (41%), Positives = 180/321 (56%), Gaps = 22/321 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K KIL VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKILETVCHNCGKIKALDSEELRYALSVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
+N+C+ +D E+PN + + HGGCG QP IR++GL+L A++K
Sbjct: 58 SSKQNVCQADPPID-----EEEPNVKEKAGRIKHGGCGNAQPAIRKTGLELWAQYKPRKG 112
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQE 253
D +E+ +P K + + + GL L EW +
Sbjct: 113 DEEEETVP--EKSQIWPAQALQIFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPVR 170
Query: 254 KKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 171 PSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPEHIAKELQALLQYHVATYM 230
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+V
Sbjct: 231 DNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEV 290
Query: 371 GVPRSIAQNMTFPEIVTPFNM 391
GVPRSIA+ +T+PE VT FN+
Sbjct: 291 GVPRSIARTLTYPETVTRFNI 311
>gi|394998753|gb|AFN44295.1| RNA polymerase II largest subunit, partial [Caloplaca scotoplaca]
Length = 356
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 136/315 (43%), Positives = 185/315 (58%), Gaps = 31/315 (9%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+LV S+P + L+ + RR A I+ LCK K CE
Sbjct: 1 FLGKIKKLLETVCHNCGKILVDESNPAFVEA-LRFRDPKRRFDA-IWRLCKPKLXCETSM 58
Query: 154 EMDINKDGAEDPNSLQNK--KQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEK 206
+D +D +S + K + HGGCG QP +RR L LT WK +E Q +
Sbjct: 59 PLD------DDQSSEKTKXPRHDHGGCGNIQPEVRREALKLTGTWKAQKGDEEHEGQQAE 112
Query: 207 KIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPL 258
K P+T + + LN + +I++ GL EW + I +
Sbjct: 113 KKPITPQ-MALNVFRNIS-----TEDIQKMGLSNDYARPEWMIITVLPVPPPPVRPSISM 166
Query: 259 TGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
G + DDLT+KL DII+ N + R + G+ H+ E +LQFHVAT DN++ G
Sbjct: 167 DGGAGMRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLTQEFENLLQFHVATYMDNNIAG 226
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
LP+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSI
Sbjct: 227 LPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 286
Query: 377 AQNMTFPEIVTPFNM 391
A+ +T+PE VTP+N+
Sbjct: 287 ARTLTYPETVTPYNI 301
>gi|157741598|gb|ABV69504.1| RNA polymerase II largest subunit, partial [Verrucaria muralis]
Length = 999
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 136/324 (41%), Positives = 180/324 (55%), Gaps = 28/324 (8%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S ++R +T + R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAIDSE-ELR--YAQTVRNRKNRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQG----HGGCGRYQPNIRRSGLDLTAEWKH 198
+ +NIC+ D ED + K++ HGGCG QP IRRSGL+L A++K
Sbjct: 58 SQKQNICQA--------DSPEDEDDPMGKERSGKIRHGGCGNAQPAIRRSGLELWAQYKP 109
Query: 199 VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----D 250
D +E+ +P K + + + GL L EW +
Sbjct: 110 RKGDDEEEAVP--EKSQIWPAQALQIFQHLTDETLETLGLSLDFARPEWMILQSLPVPPP 167
Query: 251 SQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVA 307
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVA
Sbjct: 168 PVRPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVA 227
Query: 308 TLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRI 367
T DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +
Sbjct: 228 TYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSL 287
Query: 368 DQVGVPRSIAQNMTFPEIVTPFNM 391
D+VGVPRSIA+ +T+PE VT FN+
Sbjct: 288 DEVGVPRSIARTLTYPETVTRFNI 311
>gi|157741554|gb|ABV69482.1| RNA polymerase II largest subunit, partial [Thelidium incavatum]
Length = 999
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 132/322 (40%), Positives = 178/322 (55%), Gaps = 24/322 (7%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S V ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKALDSEDLRYAVSVRDR---KKRFDLIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQG----HGGCGRYQPNIRRSGLDLTAEWKH 198
+ +N+C+ D ED + K++G HGGCG QP IR++GL+L A++K
Sbjct: 58 SQKQNMCQA--------DSTEDEDDPNGKEKGGKIRHGGCGNAQPAIRKAGLELWAQYKP 109
Query: 199 VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQ 252
D +E+ +P + Q LD EW +
Sbjct: 110 RKGDDEEETVPEKSQIWPAQALQVFQHLTDETLETLGMNLDFARPEWMILQSLPVPPPPV 169
Query: 253 EKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 170 RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATY 229
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+
Sbjct: 230 MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289
Query: 370 VGVPRSIAQNMTFPEIVTPFNM 391
VGVPRSIA+ +T+PE VT FN+
Sbjct: 290 VGVPRSIARTLTYPETVTRFNI 311
>gi|150401218|ref|YP_001324984.1| DNA-directed RNA polymerase subunit A' [Methanococcus aeolicus
Nankai-3]
gi|150013921|gb|ABR56372.1| DNA-directed RNA polymerase subunit A' [Methanococcus aeolicus
Nankai-3]
Length = 888
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 140/388 (36%), Positives = 200/388 (51%), Gaps = 49/388 (12%)
Query: 16 VQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTCAGNMT 74
+ FG+LSP+ IR++SV + I +T + G P GGLMD R GVID C+TC G +
Sbjct: 13 IVFGLLSPEYIRKISVAK--IVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCKTCGGRVG 70
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
CPGHFGHI+L+KP H+G+ KIL+ VC +C K+ +S + R
Sbjct: 71 TCPGHFGHIELSKPAVHIGYAKDIYKILKAVCPHCGKVALSET----------------R 114
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGG-----CGRYQPNIRRSG 189
R ++ + + EGGD+ + D K+G G CG + +I+ S
Sbjct: 115 RMEYLKKMETLEE--EGGDKWQLADDVL---------KEGAGKDICPYCGETKYDIKYSK 163
Query: 190 LDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 249
+ + +Q++ + + +L P + R EW +
Sbjct: 164 ---PTAYLQIEGKTQKQLMSSEVREILEKIPDEDCMLIGVNPEVAR------PEWMILTS 214
Query: 250 -----DSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQF 304
+ I L DDLTHKL DII+ N L N GA +I + +LQ+
Sbjct: 215 LPVPPVTVRPSITLESGERSEDDLTHKLVDIIRINQRLDENIEGGAPNLIIEDLWDLLQY 274
Query: 305 HVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
H+ T DN+ PG P A +SG+PL+ I RLKGKEGR R NL GKRV+FSARTVI+PDP
Sbjct: 275 HINTYFDNEAPGTPPARHRSGRPLRTIAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPR 334
Query: 365 LRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
L I++VG+P+ IA+ +T PE VT +N+D
Sbjct: 335 LSINEVGIPKQIAKELTIPEKVTKYNID 362
>gi|157741628|gb|ABV69519.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
Length = 999
Score = 217 bits (553), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 182/322 (56%), Gaps = 24/322 (7%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K KIL VC C K+ S + ++ + ++R ++ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKILETVCHNCGKIKALDSEELRYALSVRDR---KKRFELVWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNK--KQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
+N+C+ +D E+PN L+ K + HGGCG QP IR++GL+L A++K
Sbjct: 58 SSKQNVCQADPPID-----EEEPN-LKEKAGRIKHGGCGNAQPAIRKTGLELWAQYKPRK 111
Query: 201 EDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQ 252
D +E+ +P K + + + GL L EW +
Sbjct: 112 GDEEEETVP--EKSQIWPAQALQIFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPV 169
Query: 253 EKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 170 RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPEHIAKELQALLQYHVATY 229
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+
Sbjct: 230 MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289
Query: 370 VGVPRSIAQNMTFPEIVTPFNM 391
VGVPRSIA+ +T+PE VT FN+
Sbjct: 290 VGVPRSIARTLTYPETVTRFNI 311
>gi|157741504|gb|ABV69457.1| RNA polymerase II largest subunit, partial [Heteroplacidium
imbricatum]
Length = 999
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 181/321 (56%), Gaps = 22/321 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSEELRYALSVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
+ +NIC+ D EDP + + K HGGCG QP IR++GL+L A++K
Sbjct: 58 SQKQNICQADP-----PDDEEDPIAKEKGGKIKHGGCGNAQPAIRKTGLELWAQYKPRKG 112
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQE 253
D +E+ +P K + + + GL+L EW +
Sbjct: 113 DEEEETVP--EKSQIWPAQALQVFQHLTDETLETLGLNLDFARPEWMILQSLPVPPPPVR 170
Query: 254 KKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 171 PSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYM 230
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+V
Sbjct: 231 DNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEV 290
Query: 371 GVPRSIAQNMTFPEIVTPFNM 391
GVPRSIA+ +T+PE VT FN+
Sbjct: 291 GVPRSIARTLTYPETVTRFNI 311
>gi|157741492|gb|ABV69451.1| RNA polymerase II largest subunit, partial [Dermatocarpon miniatum]
Length = 999
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 132/323 (40%), Positives = 182/323 (56%), Gaps = 26/323 (8%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSEELRYALSVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQG---HGGCGRYQPNIRRSGLDLTAEWKHV 199
+ +N+C+ + D +DP + +K G HGGCG QP +R+SGL+L A++K
Sbjct: 58 SQKQNVCQAD-----SPDDEDDP--IAKEKSGKIRHGGCGNAQPQVRKSGLELWAQYKPR 110
Query: 200 NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DS 251
D +E+ IP K + + + GL + EW +
Sbjct: 111 KGDDEEETIP--EKSQIWPAQALQVFQHLTDETLETLGLSVDFARPEWMILQSLPVPPPP 168
Query: 252 QEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVAT 308
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 169 VRPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVAT 228
Query: 309 LTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D
Sbjct: 229 YMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLD 288
Query: 369 QVGVPRSIAQNMTFPEIVTPFNM 391
+VGVPRSIA+ +T+PE VT FN+
Sbjct: 289 EVGVPRSIARTLTYPETVTRFNI 311
>gi|157741478|gb|ABV69444.1| RNA polymerase II largest subunit, partial [Bagliettoa cazzae]
Length = 999
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 132/321 (41%), Positives = 181/321 (56%), Gaps = 22/321 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K KIL VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKILETVCHNCGKIKAFDSEELRYALSVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQN-KKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
+ +N+C+ D +DPN+ K HGGCG QP IR++GL+L A++K
Sbjct: 58 SQKQNVCQADGPED-----EDDPNARDRIPKAKHGGCGNAQPAIRKTGLELWAQYKPRKG 112
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQE 253
+ +E+ +P K + + + GL+L EW +
Sbjct: 113 EDEEETVP--EKSQIWPAQALQVFQHLTDETLETLGLNLDFARPEWMILQSLPVPPPPVR 170
Query: 254 KKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 171 PSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYM 230
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+V
Sbjct: 231 DNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEV 290
Query: 371 GVPRSIAQNMTFPEIVTPFNM 391
GVPRSIA+ +T+PE VT +NM
Sbjct: 291 GVPRSIAKTLTYPETVTRWNM 311
>gi|157741508|gb|ABV69459.1| RNA polymerase II largest subunit, partial [Placidiopsis
cartilaginea]
Length = 989
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 180/322 (55%), Gaps = 22/322 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K KIL VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKILETVCHNCGKIKAVDSEELRFTLSVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQG---HGGCGRYQPNIRRSGLDLTAEWKHV 199
+ +N+C+ D +D E+ ++ +K G HGGCG QP IR++GL+L A++K
Sbjct: 58 SQKQNVCQA-DAVD------EENDAFGKEKAGRIKHGGCGNAQPAIRKTGLELWAQYKPR 110
Query: 200 NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQE 253
D +E+ +P + Q LD EW +
Sbjct: 111 KGDDEEETVPEKSQIWPAQALQVFQHLTDDTLGTLGLSLDFARPEWMILQSLPVPPPPVR 170
Query: 254 KKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 171 PSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYM 230
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+V
Sbjct: 231 DNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEV 290
Query: 371 GVPRSIAQNMTFPEIVTPFNMD 392
GVPRSIA+ +T+PE VT FN D
Sbjct: 291 GVPRSIARTLTYPETVTRFNKD 312
>gi|110669622|gb|ABG81906.1| RNA polymerase II largest subunit [Dermatocarpon miniatum]
Length = 1011
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 180/320 (56%), Gaps = 25/320 (7%)
Query: 84 DLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR-RQAFIYDL 142
+LA PV+H GF+ K K+L VC C K+ K D+ + R+ R I+ L
Sbjct: 1 ELAVPVYHYGFLGKVKKLLETVCHNCGKI-------KAVDLRYALSVRDRKKRFELIWRL 53
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNED 202
+ +N+C+ D + A++ +S K HGGCG QP IR+SGL+L A++K D
Sbjct: 54 SQKQNVCQADSPDDEDDAIAKEKSS----KIRHGGCGNAQPQIRKSGLELWAQYKPRKGD 109
Query: 203 SQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQEK 254
+E+ +P K + + + GL L EW +
Sbjct: 110 DEEETVP--EKSQIWPAQALQVFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPVRP 167
Query: 255 KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT D
Sbjct: 168 SISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMD 227
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
ND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VG
Sbjct: 228 NDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVG 287
Query: 372 VPRSIAQNMTFPEIVTPFNM 391
VPRSIA+ +T+PE VT FN+
Sbjct: 288 VPRSIARTLTYPETVTRFNI 307
>gi|341859022|gb|AEK97421.1| ribosomal polymerase II largest subunit [Cordyceps militaris]
Length = 952
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 127/307 (41%), Positives = 179/307 (58%), Gaps = 19/307 (6%)
Query: 97 KTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMD 156
K K+L VC CSK+L S P+ V + R ++ I+ +CK K CE + D
Sbjct: 2 KVKKVLEIVCHNCSKVLADESDPEFVAAVRTRDPKVRFKR--IWAVCKKKRKCENEERQD 59
Query: 157 INKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL 216
NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K + V
Sbjct: 60 KNKDEEFAPAVKNTVLEGHGGCGNMQPQVRQAALQLKAAFEVNSEEGPKRK-----ETVN 114
Query: 217 LNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVLL-- 265
++ + HG R + ++ GL+ EW + I + G G
Sbjct: 115 ISAEMAHGILRRISERDLHNMGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTGTRN 174
Query: 266 -DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKS 324
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+QKS
Sbjct: 175 EDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKS 234
Query: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPE 384
G+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T+PE
Sbjct: 235 GRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPE 294
Query: 385 IVTPFNM 391
VTP+N+
Sbjct: 295 TVTPYNI 301
>gi|157741490|gb|ABV69450.1| RNA polymerase II largest subunit, partial [Dermatocarpon luridum]
Length = 999
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 132/323 (40%), Positives = 182/323 (56%), Gaps = 26/323 (8%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKVKAVDSEELRYALSVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQG---HGGCGRYQPNIRRSGLDLTAEWKHV 199
+ +N+C+ + D +DP + +K G HGGCG QP +R+SGL+L A++K
Sbjct: 58 SQKQNVCQAD-----SPDDEDDP--IAKEKSGKIRHGGCGNAQPQVRKSGLELWAQYKPR 110
Query: 200 NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DS 251
D +E+ IP K + + + GL + EW +
Sbjct: 111 KGDDEEETIP--EKSQIWPAQALQVFQHLTDETLETLGLSVDFARPEWMILQSLPVPPPP 168
Query: 252 QEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVAT 308
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 169 VRPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVAT 228
Query: 309 LTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D
Sbjct: 229 YMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLD 288
Query: 369 QVGVPRSIAQNMTFPEIVTPFNM 391
+VGVPRSIA+ +T+PE VT FN+
Sbjct: 289 EVGVPRSIARTLTYPETVTRFNI 311
>gi|226876160|gb|ACO89401.1| RNA polymerase II largest subunit, partial [Capronia sp. WUC 102]
Length = 994
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 133/323 (41%), Positives = 179/323 (55%), Gaps = 26/323 (8%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA VFH GF+TK KIL VC C K+ S + L+ +RR ++ L
Sbjct: 1 IKLATSVFHYGFMTKVKKILETVCHNCGKIKALDSEDLRHALSLR---DPKRRFDAVWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
K + ICE D +DP+ L + HGGCG QP+IRR+GL L A WK
Sbjct: 58 SKPRQICEA--------DPPDDPDQLLKGPPQPKHGGCGNAQPDIRRTGLQLWASWKPRK 109
Query: 201 EDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVNE-----DSQ 252
+ +E P K + + + +++ GL L EW ++
Sbjct: 110 GEDEEDATP--EKKRIFPQDALNTFRILTDDTLQKMGLSLDYARPEWMILSALPVPPPPV 167
Query: 253 EKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G G DDLT KL DII+ N ++R E G H+ + +LQ+H+AT
Sbjct: 168 RPSISVDGSGQGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATY 227
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DN++ GL +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+
Sbjct: 228 MDNEIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 287
Query: 370 VGVPRSIAQNMTFPEIVTPFNMD 392
VGVPRSIA+ +T+PE VT F+ D
Sbjct: 288 VGVPRSIARTLTYPETVTDFSRD 310
>gi|157741486|gb|ABV69448.1| RNA polymerase II largest subunit, partial [Clavascidium umbrinum]
Length = 999
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 131/322 (40%), Positives = 178/322 (55%), Gaps = 24/322 (7%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKALDSEELRYALSVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQG----HGGCGRYQPNIRRSGLDLTAEWKH 198
+ +N+C+ D ED + K++G HGGCG QP IR++GL+L A++K
Sbjct: 58 SQKQNVCQA--------DAPEDEDDPIAKEKGGKIRHGGCGNAQPAIRKTGLELWAQYKP 109
Query: 199 VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQ 252
D +E+ +P + Q LD EW +
Sbjct: 110 RKGDDEEETVPEKSQIWPAQALQVFQHLTDETLETLGMNLDFARPEWMILQSLPVPPPPV 169
Query: 253 EKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 170 RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+
Sbjct: 230 MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289
Query: 370 VGVPRSIAQNMTFPEIVTPFNM 391
VGVPRSIA+ +T+PE VT FN+
Sbjct: 290 VGVPRSIARTLTYPETVTRFNI 311
>gi|340344217|ref|ZP_08667349.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519358|gb|EGP93081.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 1263
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 135/393 (34%), Positives = 203/393 (51%), Gaps = 46/393 (11%)
Query: 10 LRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQT 68
++ + ++F + SP EIR+ SV E I PET E G P GGLMD R G ++ +C T
Sbjct: 6 IKTIDAIRFSVWSPTEIRKYSVAE--ITAPETYDEDGMPVQGGLMDGRLGTLEPGQKCLT 63
Query: 69 CAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKT 128
C CPGHFGHI+LA+PV H+ F+ K+L+ C C++L KV L+
Sbjct: 64 CGNTAARCPGHFGHIELAEPVLHIAFIDNIYKLLQSTCRSCARL-------KVPQEDLEE 116
Query: 129 KGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRS 188
+ + + A Y + K I E ++ K E P+ CG+ Q + +
Sbjct: 117 FRKIKEKHA-AYTVISEKRIPE--QIIEKAKKAKECPH-----------CGKTQYELIFT 162
Query: 189 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 248
+ E + E + +P+T + Y P R EW +
Sbjct: 163 KPTIFVEKTEIGE---HRLLPITIRERFTQIIDDDLNLLSYDPVTAR------PEWFIL- 212
Query: 249 EDSQEKKIP--------LTGKGVLLDD-LTHKLADIIKCNNELIRNESSGAATHVIAENI 299
Q +P + G+ +D LTHK+ DII+ N L ++ +G ++ + +
Sbjct: 213 ---QALPVPPVTVRPSIILETGIRSEDDLTHKMVDIIRVNQRLKESKEAGTPPLIVQDLV 269
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
+LQ+H T DN++ G+P+A +SG+PLK + RLKGKEGR RG+L GKRVDFS+RTVI
Sbjct: 270 DLLQYHTTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVI 329
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+PDPNL + +VGVP +A +T PEIVT +N++
Sbjct: 330 SPDPNLDLSEVGVPEQVAMKLTIPEIVTEWNIE 362
>gi|157741528|gb|ABV69469.1| RNA polymerase II largest subunit, partial [Placocarpus schaereri]
Length = 999
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 178/320 (55%), Gaps = 20/320 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K KIL VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKILETVCHNCGKIKAVDSEDLRYALSVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNK--KQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
+N+C+ D E+PN L+ K + HGGCG QP IR++GL+L A++K
Sbjct: 58 SSKQNVCQADPPND-----EEEPN-LKEKAGRIKHGGCGNAQPAIRKTGLELWAQYKPRK 111
Query: 201 EDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQEK 254
D +E+ +P + Q LD EW +
Sbjct: 112 GDEEEETVPEKSQIWPAQALQIFQHLSDETLETLGLSLDFARPEWMILQSLPVPPPPVRP 171
Query: 255 KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT D
Sbjct: 172 SISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPEHIAKELQALLQYHVATYMD 231
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
ND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VG
Sbjct: 232 NDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVG 291
Query: 372 VPRSIAQNMTFPEIVTPFNM 391
VPRSIA+ +T+PE VT FN+
Sbjct: 292 VPRSIARTLTYPETVTRFNI 311
>gi|119643730|gb|ABL85585.1| RNA polymerase II largest subunit [Xanthoparmelia conspersa]
Length = 1000
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 173/302 (57%), Gaps = 35/302 (11%)
Query: 107 FYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPN 166
++ KL S+P D + + ++R ++ LCK K ICE M ++ D D
Sbjct: 30 YWWMKL----SNPAFADAIRRR--DPKKRFDMVWRLCKPKMICE--TTMALDDDSPSDKT 81
Query: 167 SLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQ 221
+ K HGGCG QP +RR GL LT WK NE Q +K P+T + L
Sbjct: 82 --KEPKHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPEKKPITPQMAL----- 134
Query: 222 GHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGKGVL-------LDDLT 269
R+ +IRR GL EW + V DDLT
Sbjct: 135 ---NIFRHISTEDIRRMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLT 191
Query: 270 HKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLK 329
+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+ G P+A+QKSG+P+K
Sbjct: 192 YKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVK 251
Query: 330 AIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPF 389
+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+
Sbjct: 252 SIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPY 311
Query: 390 NM 391
N+
Sbjct: 312 NI 313
>gi|157741518|gb|ABV69464.1| RNA polymerase II largest subunit, partial [Placidium lacinulatum]
Length = 989
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 131/322 (40%), Positives = 178/322 (55%), Gaps = 24/322 (7%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKALDSEELRYALSVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQG----HGGCGRYQPNIRRSGLDLTAEWKH 198
+ +N+C+ D ED + K++G HGGCG QP IR++GL+L A++K
Sbjct: 58 SQKQNVCQA--------DAPEDEDDPIVKEKGGKIRHGGCGNAQPAIRKTGLELWAQYKP 109
Query: 199 VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQ 252
D +E+ +P + Q LD EW +
Sbjct: 110 RKGDDEEETVPEKSQIWPAQALQVFQHLTDETLETLGMNLDFARPEWMILQSLPVPPPPV 169
Query: 253 EKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 170 RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+
Sbjct: 230 MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289
Query: 370 VGVPRSIAQNMTFPEIVTPFNM 391
VGVPRSIA+ +T+PE VT FN+
Sbjct: 290 VGVPRSIARTLTYPETVTRFNI 311
>gi|347728920|gb|AEP20110.1| RNA polymerase II largest subunit [Lecidea fuscoatra]
Length = 338
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 137/301 (45%), Positives = 179/301 (59%), Gaps = 32/301 (10%)
Query: 109 CSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICE--GGDEMDINKDGAEDPN 166
C K+LV S P+ RD L+ + +R A I+ LCK K CE G E D D ++P
Sbjct: 1 CGKILVDESDPRFRDA-LRFRDPKKRFDA-IWRLCKPKKKCETTAGQEDD-GLDKTKEP- 56
Query: 167 SLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQ 221
K HGGCG P +RR GL L WK NE Q +K P+T + V LN +
Sbjct: 57 -----KHDHGGCGNNHPEVRREGLKLIGTWKAQKGEEENEGQQPEKKPITPQ-VALNVFR 110
Query: 222 GHGGCGRYQPNIRRSGLD---LTAEWKHVN-----EDSQEKKIPLTGKGVLL--DDLTHK 271
H G +I+ GL EW + I + G + DDLT+K
Sbjct: 111 -HISTG----DIKTMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGMRGEDDLTYK 165
Query: 272 LADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAI 331
L DII+ N + R E+ G+ H++ E +LQFHVAT DND+ G P+A+QKSG+P+K+I
Sbjct: 166 LGDIIRANGNVQRCEAEGSPAHIVTEFEHLLQFHVATYMDNDIAGQPQALQKSGRPVKSI 225
Query: 332 KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 226 RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 285
Query: 392 D 392
+
Sbjct: 286 E 286
>gi|157741572|gb|ABV69491.1| RNA polymerase II largest subunit, partial [Verrucaria dolosa]
Length = 999
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/323 (41%), Positives = 176/323 (54%), Gaps = 26/323 (8%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHP-----KVRDVVLKTKGQSRRRQA 137
I LA PV+H GF+ K K+L VC C K+ S VRD ++R
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSEELRYAHGVRD--------RKKRFE 52
Query: 138 FIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK 197
I+ L + +N+C D +DG + ++ K HGGCG QP IR++GL+L A++K
Sbjct: 53 LIWRLSQKQNVCLA----DAPEDGDDPMAKEKSGKISHGGCGNAQPQIRKTGLELWAQYK 108
Query: 198 HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DS 251
D +E+ +P + Q LD EW +
Sbjct: 109 PRKGDDEEEAVPEKSQIWPAQALQVFQHLTDETLETLGMSLDFARPEWMILQSLPVPPPP 168
Query: 252 QEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVAT 308
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 169 VRPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIARELQALLQYHVAT 228
Query: 309 LTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D
Sbjct: 229 YMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLD 288
Query: 369 QVGVPRSIAQNMTFPEIVTPFNM 391
+VGVPRSIA+ +T+PE VT FN+
Sbjct: 289 EVGVPRSIARTLTYPETVTQFNI 311
>gi|161527856|ref|YP_001581682.1| bifunctional DNA-directed RNA polymerase subunit A'/A''
[Nitrosopumilus maritimus SCM1]
gi|160339157|gb|ABX12244.1| DNA-directed RNA polymerase subunit A' [Nitrosopumilus maritimus
SCM1]
Length = 1263
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/393 (34%), Positives = 204/393 (51%), Gaps = 46/393 (11%)
Query: 10 LRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQT 68
++ + ++F + SP EIR+ SV E I PET E G P GGLMD R G ++ +C T
Sbjct: 6 VKAIDGIRFSVWSPTEIRKYSVAE--ITAPETYDEDGMPVQGGLMDGRLGTLEPGQKCLT 63
Query: 69 CAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKT 128
C CPGHFGH++LA+PV H+ F+ K+L+ C C++L V P+ V KT
Sbjct: 64 CGNTAARCPGHFGHLELAEPVLHIAFIDNIYKLLQSTCRSCARLKV----PQEDLNVFKT 119
Query: 129 KGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRS 188
+ + Y + K I E ++ K E P+ CG+ Q + +
Sbjct: 120 I----KEKHAAYTVISQKRIPE--QIIEKAKKAKECPH-----------CGKTQYELIFT 162
Query: 189 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 248
+ E + E + +P+T + Y P R EW +
Sbjct: 163 KPTIFVEKTEIGE---HRLLPITIRERFSQIIDEDLELLSYDPVTAR------PEWFVL- 212
Query: 249 EDSQEKKIP--LTGKGVLLD-------DLTHKLADIIKCNNELIRNESSGAATHVIAENI 299
Q +P ++L+ DLTHK+ DII+ N L ++ +G ++ + +
Sbjct: 213 ---QAFPVPPVTVRPSIILETGIRSEDDLTHKMVDIIRVNQRLKESKDAGTPPLIVQDLV 269
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
+LQ+H T DN++ G+P+A +SG+PLK + RLKGKEGR RG+L GKRVDFS+RTVI
Sbjct: 270 DLLQYHTTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVI 329
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+PDPNL + +VGVP ++A +T PEIVT +N++
Sbjct: 330 SPDPNLDLSEVGVPEAVAMKLTIPEIVTEWNIE 362
>gi|386875147|ref|ZP_10117336.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosopumilus
salaria BD31]
gi|386807026|gb|EIJ66456.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosopumilus
salaria BD31]
Length = 1263
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 136/397 (34%), Positives = 203/397 (51%), Gaps = 46/397 (11%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSS 64
S ++ + +QF + SP EIR+ SV E I PET E G P GGLMD R G ++
Sbjct: 2 SVQAIKAIDGIQFSVWSPTEIRKYSVAE--ITAPETYDEDGMPVQGGLMDGRLGTLEPGQ 59
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
+C TC CPGHFGHI+LA+P+ H+ F+ K+L+ C C++L KV
Sbjct: 60 KCLTCGNTAARCPGHFGHIELAEPILHIAFIDNIYKLLQSTCRSCARL-------KVPQE 112
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPN 184
L + + + A Y + K I E ++ K E P+ CG+ Q
Sbjct: 113 DLDAFKKIKDKHA-AYTVISQKRIPE--QIIEKAKKAKECPH-----------CGKTQYE 158
Query: 185 IRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEW 244
+ + + E + E + +P+T + Y P R EW
Sbjct: 159 LVFTKPTIFVEKTEIGE---HRLLPITIRERFSQILDEDLEILSYDPRTAR------PEW 209
Query: 245 KHVNEDSQEKKIP--------LTGKGVLLDD-LTHKLADIIKCNNELIRNESSGAATHVI 295
+ Q +P + G+ +D LTHK+ DII+ N L ++ +G ++
Sbjct: 210 FIL----QALPVPPVTVRPSIILETGIRSEDDLTHKMVDIIRVNQRLKESKEAGTPPLIV 265
Query: 296 AENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 355
+ + +LQ+H T DN++ G+P+A +SG+PLK + RLKGKEGR RG+L GKRVDFS+
Sbjct: 266 QDLVDLLQYHSTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSS 325
Query: 356 RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
RTVI+PDPNL + +VGVP +A +T PEIVT +N++
Sbjct: 326 RTVISPDPNLDLSEVGVPEQVAMKLTIPEIVTEWNIE 362
>gi|394998745|gb|AFN44291.1| RNA polymerase II largest subunit, partial [Caloplaca crenularia]
Length = 355
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/313 (43%), Positives = 183/313 (58%), Gaps = 28/313 (8%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K KIL VC C K+LV S P + L+++ RR A I+ LCK K ICE
Sbjct: 1 FLGKIKKILETVCHNCGKILVDESEPAFVEA-LRSRDPKRRFDA-IWRLCKPKMICE--T 56
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
M + D A+ + +K HGGCG QP +RR L LT K +E Q +K
Sbjct: 57 SMPLPDDQADKS---KEQKHDHGGCGNIQPEVRREALKLTGTRKAQKGDEEHEGQQAEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTG 260
P+T + + LN + +I++ GL EW + I + G
Sbjct: 114 PITPQ-MALNVFRNIS-----TEDIQKMGLSNDYARPEWMIITVLPVPPPPVRPSISMDG 167
Query: 261 KGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
+ DDLT+KL DII+ N + R + G+ H+ E +LQFHVAT DN++ GLP
Sbjct: 168 GAGMRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLTQEFENLLQFHVATYMDNNIAGLP 227
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 XALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 287
Query: 379 NMTFPEIVTPFNM 391
+T+PE VTP+N+
Sbjct: 288 TLTYPETVTPYNI 300
>gi|157741562|gb|ABV69486.1| RNA polymerase II largest subunit, partial [Placopyrenium canellum]
Length = 999
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 182/329 (55%), Gaps = 36/329 (10%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHP-----KVRDVVLKTKGQSRRRQA 137
I LA PV+H GF+ K K+L VC C K+ S VRD ++R
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSEELRYAHSVRD--------RKKRFE 52
Query: 138 FIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQG---HGGCGRYQPNIRRSGLDLTA 194
I+ L + +N+C+ + D +DP + +K G HGGCG QP IR++GL+L A
Sbjct: 53 LIWRLSQKQNVCQAD-----SPDDEDDP--IAKEKSGKIRHGGCGNAQPAIRKTGLELWA 105
Query: 195 EWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-- 249
++K D +E+ +P K + + + GL + EW +
Sbjct: 106 QYKPRKGDDEEEAVP--EKSQIWPAQALQVSQHLTDETLETLGLSVDFARPEWMILQSLP 163
Query: 250 ---DSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ
Sbjct: 164 VPPPPVRPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQ 223
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
+HVAT DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DP
Sbjct: 224 YHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDP 283
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
NL +D+VGVPRSIA+ +T+PE VT FN++
Sbjct: 284 NLSLDEVGVPRSIARTLTYPETVTRFNIE 312
>gi|302180185|gb|ADK98563.1| RNA polymerase II largest subunit [Psoroglaena abscondita]
Length = 373
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 181/320 (56%), Gaps = 24/320 (7%)
Query: 85 LAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCK 144
LA PV+H GF+ K KIL VC C K+ S + ++ + ++R I+ L
Sbjct: 2 LAVPVYHYGFLGKVKKILETVCHNCGKIKALDSEELRYALSVRDR---KKRFELIWRLSS 58
Query: 145 GKNICEGGDEMDINKDGAEDPNSLQNK--KQGHGGCGRYQPNIRRSGLDLTAEWKHVNED 202
+N+C+ +D E+PN L+ K + HGGCG QP IR++GL+L A++K D
Sbjct: 59 KQNVCQADPPID-----EEEPN-LKEKAGRIKHGGCGNAQPAIRKTGLELWAQYKPRKGD 112
Query: 203 SQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQEK 254
+E+ +P K + + + GL L EW +
Sbjct: 113 EEEETVP--EKSQIWPAQALQIFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPVRP 170
Query: 255 KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT D
Sbjct: 171 SISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPEHIAKELQALLQYHVATYMD 230
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
ND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VG
Sbjct: 231 NDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITSDPNLSLDEVG 290
Query: 372 VPRSIAQNMTFPEIVTPFNM 391
VPRSIA+ +T+PE VT FN+
Sbjct: 291 VPRSIARTLTYPETVTRFNI 310
>gi|341859018|gb|AEK97419.1| ribosomal polymerase II largest subunit [Isaria tenuipes]
Length = 952
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 182/310 (58%), Gaps = 21/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIRTRDPKLRFKR--VWAVCKKKRKCENEE 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD E+ +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKD--EEFGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVTSEEGPKRK-----E 111
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 112 TVNISAEMAHGILRRISERDLHNMGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 171
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 172 TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 231
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T
Sbjct: 232 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 291
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 292 YPETVTPYNI 301
>gi|157741602|gb|ABV69506.1| RNA polymerase II largest subunit, partial [Verrucaria polysticta]
Length = 999
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 131/320 (40%), Positives = 178/320 (55%), Gaps = 20/320 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S + ++ ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKVKAVDSEDLRYALSVRN---PKKRFDLIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNED 202
+ +N+C+ D A++ ++ K GHGGCG QP IR+SGL+L A++K D
Sbjct: 58 SQKQNVCQADSPEDEQDSMAKE----KSGKVGHGGCGNAQPQIRKSGLELWAQYKPRKGD 113
Query: 203 SQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQEK 254
E+ +P K + + + GL L EW +
Sbjct: 114 DDEETVP--EKSQIWPAQALEVFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPVRP 171
Query: 255 KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT D
Sbjct: 172 SISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMD 231
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
ND+ L +A KSG+P+K+I+ RLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VG
Sbjct: 232 NDIANLDKAQHKSGRPIKSIRVRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVG 291
Query: 372 VPRSIAQNMTFPEIVTPFNM 391
VPRSIA+ +T+PE VT FN+
Sbjct: 292 VPRSIARTLTYPETVTRFNI 311
>gi|91773158|ref|YP_565850.1| DNA-directed RNA polymerase subunit A' [Methanococcoides burtonii
DSM 6242]
gi|91712173|gb|ABE52100.1| DNA-directed RNA polymerase subunit A' [Methanococcoides burtonii
DSM 6242]
Length = 883
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 143/386 (37%), Positives = 192/386 (49%), Gaps = 43/386 (11%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTCAG 71
+ ++FG++SP E+R+MSVT I +T + G P GLMD R GVID +C++C
Sbjct: 14 IGAIKFGLISPREVRKMSVT--SIITADTYDDDGYPIDMGLMDLRLGVIDPGLKCKSCGS 71
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQ 131
ECPGHFGHI+L PV HVGF KILR VC CS LL+ S
Sbjct: 72 RAGECPGHFGHIELVAPVIHVGFNKILRKILRSVCCKCSSLLLEES-------------- 117
Query: 132 SRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLD 191
+++ F+ L K KD P+ + N + P LD
Sbjct: 118 --KKRDFLEQLAK-------------QKDMGHLPDDVINNVFKEARKSKTCPYCNEEQLD 162
Query: 192 LTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----H 246
+ E ++ K P + N P+ R EW
Sbjct: 163 IKFEKPSEYIENGHKLTPTEIRDRFENISDDDIRVMGMNPDTAR------PEWMILTVLP 216
Query: 247 VNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHV 306
V + I L DDLTHKL DII+ N N +GA +I + ++LQ+H+
Sbjct: 217 VPPVTVRPSITLESGQRSEDDLTHKLVDIIRINQRFQENRDAGAPQLIIEDLWELLQYHL 276
Query: 307 ATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLR 366
T DN++ G+P A +SG+PLK + RLKGKEGR RG+L GKRV+FSARTV++PDPNL
Sbjct: 277 TTYFDNEVSGVPPARHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVNFSARTVVSPDPNLS 336
Query: 367 IDQVGVPRSIAQNMTFPEIVTPFNMD 392
I++VGVP SIAQ+MT P V N+D
Sbjct: 337 INEVGVPLSIAQHMTIPVRVISKNID 362
>gi|341858934|gb|AEK97377.1| ribosomal polymerase II largest subunit [Beauveria asiatica]
gi|341858936|gb|AEK97378.1| ribosomal polymerase II largest subunit [Beauveria asiatica]
Length = 953
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/309 (40%), Positives = 180/309 (58%), Gaps = 19/309 (6%)
Query: 95 VTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDE 154
+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 IKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEER 58
Query: 155 MDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKG 214
D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 QDKNKDEEFAPAVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEITSEEGPKRK-----ET 113
Query: 215 VLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVLL 265
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 VNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTGT 173
Query: 266 ---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQ 322
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+Q
Sbjct: 174 RNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQ 233
Query: 323 KSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTF 382
KSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T+
Sbjct: 234 KSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTY 293
Query: 383 PEIVTPFNM 391
PE VTP+N+
Sbjct: 294 PETVTPYNI 302
>gi|206601350|gb|ACI16394.1| RNA polymerase II largest subunit [Verrucaria rupestris]
Length = 385
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 136/324 (41%), Positives = 180/324 (55%), Gaps = 28/324 (8%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S ++R +T + R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAIDSE-ELR--YAQTVRNRKNRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQG----HGGCGRYQPNIRRSGLDLTAEWKH 198
+ +NIC+ D ED + K++ HGGCG QP IRRSGL+L A++K
Sbjct: 58 SQKQNICQA--------DSPEDEDDPMGKERSGKIRHGGCGNAQPAIRRSGLELWAQFKP 109
Query: 199 VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----D 250
D +E+ +P K + + + GL L EW +
Sbjct: 110 RKGDDEEEAVP--EKSQIWPAQALQIFQHLTDETLETLGLSLDFARPEWMILQSLPVPPP 167
Query: 251 SQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVA 307
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVA
Sbjct: 168 PVRPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVA 227
Query: 308 TLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRI 367
T DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +
Sbjct: 228 TYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSL 287
Query: 368 DQVGVPRSIAQNMTFPEIVTPFNM 391
D+VGVPRSIA+ +T+PE VT FN+
Sbjct: 288 DEVGVPRSIARTLTYPETVTRFNI 311
>gi|149794942|gb|ABR31767.1| RNA polymerase II largest subunit [Phialophora verrucosa]
Length = 998
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 178/321 (55%), Gaps = 22/321 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PVFH GF+ K KIL VC C K+ + + + T+ RR +A ++ L
Sbjct: 1 IKLATPVFHYGFMNKVKKILETVCHNCGKIKALDNADFQQ--AIATRDPKRRFEA-VWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
K +NICE D EDP+ L HGGCG QP+IRR+GL L A WK
Sbjct: 58 SKPRNICEA--------DPPEDPDQLLKGPAPPKHGGCGNAQPDIRRTGLHLYATWKPRK 109
Query: 201 EDSQEKKIP----LTGKGVLLNKK----QGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQ 252
D E P + + VL + + G R + LTA
Sbjct: 110 GDDDEDTTPDKKRIFPQDVLNTFRTLSDETLQMMGINLDYARPEWMILTALPVPPPPVRP 169
Query: 253 EKKIPLTGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
I +G+G DDLT KL DII+ N ++R E G H+ + +LQ+H+AT D
Sbjct: 170 SISIDGSGQGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMD 229
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
N + GL +A K+G+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VG
Sbjct: 230 NXIAGLDKAQHKTGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVG 289
Query: 372 VPRSIAQNMTFPEIVTPFNMD 392
VPRSIA+ +TFPE VT N+D
Sbjct: 290 VPRSIARTLTFPERVTQKNID 310
>gi|226876154|gb|ACO89398.1| RNA polymerase II largest subunit, partial [Capronia semiimmersa]
Length = 993
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/324 (42%), Positives = 177/324 (54%), Gaps = 28/324 (8%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PVFH GF+ K KIL VC C K+ + + + T+ RR +A ++ L
Sbjct: 1 IKLATPVFHYGFMNKVKKILETVCHNCGKIKALDNADFQQ--AIATRDPKRRFEA-VWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
K +NICE D ED + L HGGCG QP+IRR+GL L A WK
Sbjct: 58 SKPRNICEA--------DPPEDADQLSKGPAPPKHGGCGNAQPDIRRTGLHLYATWKPRR 109
Query: 201 EDSQEKKIP-----------LTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 249
D E P T + + Q G Y R + LTA
Sbjct: 110 GDDDEDTTPDKKRIFPQDVLNTFRTLTDETLQMMGISLDYA---RPEWMILTALPVPPPP 166
Query: 250 DSQEKKIPLTGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVAT 308
I +G+G DDLT KL DII+ N ++R E G H+ + +LQ+H+AT
Sbjct: 167 VRPSISIDGSGQGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIAT 226
Query: 309 LTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
DN++ GL +A K+G+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D
Sbjct: 227 YMDNEIAGLDKAQHKTGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLD 286
Query: 369 QVGVPRSIAQNMTFPEIVTPFNMD 392
+VGVPRSIA+ +TFPE VT N+D
Sbjct: 287 EVGVPRSIARTLTFPERVTQKNID 310
>gi|341858952|gb|AEK97386.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
Length = 952
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/307 (40%), Positives = 179/307 (58%), Gaps = 19/307 (6%)
Query: 97 KTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMD 156
K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE + D
Sbjct: 2 KVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEERQD 59
Query: 157 INKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL 216
NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K + V
Sbjct: 60 KNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVTSEEGPKRK-----ETVN 114
Query: 217 LNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVLL-- 265
++ + HG R + ++ GL+ EW + I + G G
Sbjct: 115 ISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTGTRN 174
Query: 266 -DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKS 324
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+QKS
Sbjct: 175 EDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKS 234
Query: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPE 384
G+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT D NL + +VGVPRSIA+ +T+PE
Sbjct: 235 GRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPE 294
Query: 385 IVTPFNM 391
VTP+N+
Sbjct: 295 TVTPYNI 301
>gi|157741488|gb|ABV69449.1| RNA polymerase II largest subunit, partial [Clavascidium sp. AFTOL
2276]
Length = 374
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 131/322 (40%), Positives = 178/322 (55%), Gaps = 24/322 (7%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKALDSEELRYALSVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQG----HGGCGRYQPNIRRSGLDLTAEWKH 198
+ +N+C+ D ED + K++G HGGCG QP IR++GL+L A++K
Sbjct: 58 SQKQNVCQA--------DAPEDEDDPIAKEKGGKTRHGGCGNAQPAIRKTGLELWAQYKP 109
Query: 199 VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQ 252
D +E+ +P + Q LD EW +
Sbjct: 110 RKGDDEEETVPEKSQIWPAQALQVFQHLTDETLATLGMNLDFARPEWMILQSLPVPPPPV 169
Query: 253 EKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 170 RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+
Sbjct: 230 MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289
Query: 370 VGVPRSIAQNMTFPEIVTPFNM 391
VGVPRSIA+ +T+PE VT FN+
Sbjct: 290 VGVPRSIARTLTYPETVTRFNI 311
>gi|123979338|gb|ABM81494.1| RNA polymerase II largest subunit [Buellia fimbriata]
Length = 366
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 135/313 (43%), Positives = 175/313 (55%), Gaps = 28/313 (8%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F++K K+L VC C K+LV P +D L+ + +R A I+ LCK K ICE
Sbjct: 1 FISKIKKLLEMVCHNCGKILVDEGLPAFKDA-LRIRDPKKRFDA-IWRLCKPKLICE--T 56
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
M ++D E + ++ HGGCG QP IRR GL L WK NE Q K
Sbjct: 57 SMPQDEDSKE---AQKDAGPSHGGCGNIQPEIRRDGLKLMGTWKPQKGDDENEGQQGDKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEKKIPL------T 259
+T K L + ++R GL EW + +
Sbjct: 114 QITPKTALEIFRHMSA------EDVRVVGLSNDYARPEWMIITVLPVPPPPVRPSIKTDS 167
Query: 260 GKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
G G DDLT+KL DII+ N + E G H+I E +LQFHVAT ND G P
Sbjct: 168 GDGPAGEDDLTYKLGDIIRANGNVRLGEQEGTPQHIIEEFETLLQFHVATYMSNDTAGQP 227
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
+A+QKSG+P+KAI++RLKGK+GR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 QALQKSGRPVKAIRSRLKGKDGRVRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 287
Query: 379 NMTFPEIVTPFNM 391
+T+PE VTP+N+
Sbjct: 288 TLTYPETVTPYNI 300
>gi|157741516|gb|ABV69463.1| RNA polymerase II largest subunit, partial [Placidium lachneum]
Length = 989
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 181/326 (55%), Gaps = 32/326 (9%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHP-----KVRDVVLKTKGQSRRRQA 137
I LA PV+H GF+ K K+L VC C K+ S VRD ++R
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSEDLRYARSVRD--------RKKRFE 52
Query: 138 FIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEW 196
I+ L + +N+C+ + D +DP + + K HGGCG QP IR+SGL+L A++
Sbjct: 53 LIWRLSQKQNVCQAD-----SPDDEDDPIAKEKGGKVRHGGCGNAQPAIRKSGLELWAQY 107
Query: 197 KHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVNE---- 249
K D +E+ + + K + + + GL+L EW +
Sbjct: 108 KPRKSDDEEETV--SEKSQIWPAQALQVFQHLTDETLETLGLNLDFARPEWMILQSLPVP 165
Query: 250 -DSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFH 305
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+H
Sbjct: 166 PPPVRPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYH 225
Query: 306 VATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNL 365
VAT DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL
Sbjct: 226 VATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNL 285
Query: 366 RIDQVGVPRSIAQNMTFPEIVTPFNM 391
+D+VGVPRSIA+ +T+PE VT FN+
Sbjct: 286 SLDEVGVPRSIARTLTYPETVTRFNI 311
>gi|119643527|gb|ABL85575.1| RNA polymerase II largest subunit [Flavopunctelia flaventior]
Length = 995
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 128/292 (43%), Positives = 169/292 (57%), Gaps = 31/292 (10%)
Query: 117 SHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHG 176
S+P D + + ++R ++ LCK K ICE M ++ D D + K HG
Sbjct: 36 SNPAFADAIRRR--DPKKRFDMVWRLCKPKMICE--TTMALDDDAPSDKT--KEPKHDHG 89
Query: 177 GCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-- 229
GCG QP +RR GL LT WK NE Q +K P+T + L R+
Sbjct: 90 GCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPEKKPITPQMAL--------NIFRHIS 141
Query: 230 QPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGKGVL-------LDDLTHKLADIIKCN 279
+I+R GL EW + V DDLT+KL DII+ N
Sbjct: 142 TEDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLTYKLGDIIRAN 201
Query: 280 NELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKE 339
+ R E+ G+ HV+ E ++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKE
Sbjct: 202 GNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKE 261
Query: 340 GRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
GR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 262 GRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 313
>gi|394998735|gb|AFN44286.1| RNA polymerase II largest subunit, partial [Caloplaca arnoldii
subsp. obliterata]
Length = 355
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 181/313 (57%), Gaps = 28/313 (8%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+ + P+ + + +RR I+ K K ICE
Sbjct: 1 FLTKIKKLLETVCHNCGKIRADRNMPEFLEAIRHR--DPKRRFEGIWRASKKKLICETST 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
+D + P + ++++ HGGCG QP IRR L LT WK +E Q +K
Sbjct: 59 PLD-----DDHPETGKSQRHDHGGCGNIQPEIRREALKLTGTWKAQKGDDEHEGQQAEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTG 260
P+T + + LN + +I+ GL EW + I + G
Sbjct: 114 PITPQ-MALNVFRNIS-----TDDIKDLGLSNDYARPEWMIITVLPVPPPPVRPSISMDG 167
Query: 261 KGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
+ DDLT+KL DII+ N + R + G+ H+I E +LQFHVAT DN++ GLP
Sbjct: 168 GAGMRGEDDLTYKLGDIIRANGNVKRCDLEGSPQHLIQEFENLLQFHVATYMDNNIAGLP 227
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 QALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 287
Query: 379 NMTFPEIVTPFNM 391
+T+PE VTP+N+
Sbjct: 288 TLTYPETVTPYNI 300
>gi|119643888|gb|ABL85593.1| RNA polymerase II largest subunit [Protopannaria pezizoides]
Length = 1016
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 133/305 (43%), Positives = 176/305 (57%), Gaps = 34/305 (11%)
Query: 105 VCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEM-DINKDGAE 163
V L+ S+P D L+ + RR A I+ LCK K CE + D N + ++
Sbjct: 32 VIIVARYWLMKLSNPAFADA-LRYRDPKRRFDA-IWRLCKPKMTCETAAAIEDDNMEKSK 89
Query: 164 DPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLN 218
+P K HGGCG QP +RR GL L WK NE Q +K P+T + L
Sbjct: 90 EP------KHDHGGCGNIQPEVRREGLRLNGTWKAQKGDEENEGQQPEKKPITPQMAL-- 141
Query: 219 KKQGHGGCGRYQPN--IRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVLL--D 266
R+ N I++ GL EW + I + G + D
Sbjct: 142 ------NIFRHISNDEIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGMRGED 195
Query: 267 DLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGK 326
DLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+ G P+A+QKSG+
Sbjct: 196 DLTYKLGDIIRANGNVRRCETEGSPAHVVTEFEQLLQFHVATYMDNDIAGQPQALQKSGR 255
Query: 327 PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIV 386
P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE V
Sbjct: 256 PVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETV 315
Query: 387 TPFNM 391
TP+N+
Sbjct: 316 TPYNI 320
>gi|119643638|gb|ABL85580.1| RNA polymerase II largest subunit [Parmotrema tinctorum]
Length = 386
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 130/298 (43%), Positives = 173/298 (58%), Gaps = 35/298 (11%)
Query: 113 LVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNK- 171
L S+P D + + ++R ++ LCK K ICE +D ++P S ++K
Sbjct: 40 LTKSSNPAFADAIRRR--DPKKRFDMVWRLCKPKMICETTMALD------DEPPSDKSKE 91
Query: 172 -KQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGG 225
K HGGCG QP +RR GL LT WK NE Q +K P+T + L
Sbjct: 92 AKHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPEKKPITPQMAL--------N 143
Query: 226 CGRY--QPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGKGVL-------LDDLTHKLA 273
R+ +I+R GL EW + V DDLT+KL
Sbjct: 144 IFRHISTEDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLTYKLG 203
Query: 274 DIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKA 333
DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+ G P+A+QKSG+P+K+I+A
Sbjct: 204 DIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRA 263
Query: 334 RLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 264 RLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 321
>gi|226876162|gb|ACO89402.1| RNA polymerase II largest subunit, partial [Capronia sp. WUC 236]
Length = 372
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 134/323 (41%), Positives = 177/323 (54%), Gaps = 26/323 (8%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+TK KIL VC C K+ S + L+ + +RR ++ L
Sbjct: 1 IKLATPVYHYGFMTKVKKILETVCHNCGKIKAIDSEDLRHALSLRDR---KRRFDAVWRL 57
Query: 143 CKGKNICEGGDEMDINK--DGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
K K +CE D ++ G P HGGCG QP IRR GL L A WK
Sbjct: 58 SKPKLVCEADPPDDPDQPMKGPAPPK--------HGGCGNAQPEIRRQGLQLWATWKPRK 109
Query: 201 EDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVNE-----DSQ 252
+ +E P K + + + + GL L +W ++
Sbjct: 110 GEDEEDTTP--EKKRIFPQDALNTFRTLTDETLELMGLSLDYARPDWMILSALPVPPPPV 167
Query: 253 EKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G G DDLT KL DII+ N ++R E G H+ + +LQ+H+AT
Sbjct: 168 RPSISVDGSGQGSRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATY 227
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DN++ GL RA KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+
Sbjct: 228 MDNEIAGLDRAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 287
Query: 370 VGVPRSIAQNMTFPEIVTPFNMD 392
VGVPRSIA+ +T+PE VTPFN+D
Sbjct: 288 VGVPRSIARTLTYPETVTPFNLD 310
>gi|157741502|gb|ABV69456.1| RNA polymerase II largest subunit, partial [Heteroplacidium
contumescens]
Length = 374
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 133/323 (41%), Positives = 182/323 (56%), Gaps = 26/323 (8%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSEELRYALSVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQG---HGGCGRYQPNIRRSGLDLTAEWKHV 199
+ +N+C+ D EDP + +K G HGGCG QP IR++GL+L A++K
Sbjct: 58 SQKQNVCQADP-----PDDEEDP--IAKEKGGRIKHGGCGNAQPAIRKTGLELWAQYKPR 110
Query: 200 NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DS 251
D +E+ +P K + + + GL+L EW +
Sbjct: 111 KGDEEEETVP--EKSQIWPAQALQVFQHLTDETLETLGLNLDFARPEWMILQSLPVPPPP 168
Query: 252 QEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVAT 308
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 169 VRPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVAT 228
Query: 309 LTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D
Sbjct: 229 YMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLD 288
Query: 369 QVGVPRSIAQNMTFPEIVTPFNM 391
+VGVPRSIA+ +T+PE VT FN+
Sbjct: 289 EVGVPRSIARTLTYPETVTRFNI 311
>gi|312273881|gb|ADQ57310.1| RNA polymerase II largest subunit, partial [Nosema fumiferanae]
Length = 939
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 133/306 (43%), Positives = 176/306 (57%), Gaps = 48/306 (15%)
Query: 96 TKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEM 155
+K KIL C+CFYCS+L VS + LK + I+ + KGK +CEG
Sbjct: 1 SKIKKILECICFYCSRLKVSRKN-------LKNDLNA------IWAVSKGKMVCEG---- 43
Query: 156 DINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV 215
++ ++G GCG QP I++ GL+L A K ED+ E K+ L G+ V
Sbjct: 44 -------------ESTEEGFTGCGNKQPVIKKEGLNLVAFMK--GEDNTEGKVILNGEKV 88
Query: 216 LLNKKQGHGGCGR-YQPNIRRSGLDLTA---EWK-----HVNEDSQEKKIPLTGKGVLLD 266
H + +I G DL EW V S I + G D
Sbjct: 89 -------HSIFKKILDEDIEVLGFDLAYSRPEWLILTVLLVPPPSVRPSIVMEGMLRAED 141
Query: 267 DLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGK 326
DLTHKL+DIIK N L + E GA H+I + ++LQFHVATL DND+ G P+A+QKSG+
Sbjct: 142 DLTHKLSDIIKSNTYLKKYEMEGAPGHIIRDYEQLLQFHVATLIDNDISGQPQALQKSGR 201
Query: 327 PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIV 386
PLK+I ARLKGKEGR+RGNLMGKRVDFSAR+VIT D N+ +++VGVP +A+ TFPE +
Sbjct: 202 PLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPLEVAKIHTFPEKI 261
Query: 387 TPFNMD 392
TPFN++
Sbjct: 262 TPFNIE 267
>gi|394998795|gb|AFN44316.1| RNA polymerase II largest subunit, partial [Dimelaena radiata]
Length = 355
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 135/316 (42%), Positives = 175/316 (55%), Gaps = 34/316 (10%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F++K K+L VC C K+LV P +D L+ + +R A I+ LCK + ICE
Sbjct: 1 FISKIKKLLEMVCHNCGKILVDEGLPAFKDA-LRIRDPKKRFDA-IWRLCKPRMICE--- 55
Query: 154 EMDINKDGAEDPNSLQNKKQG---HGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQE 205
A+D +S + +K HGGCG QP IRR GL L WK NE Q
Sbjct: 56 -----TSMAQDEDSKEAQKDAGPSHGGCGNIQPEIRRDGLKLMGTWKPQKGDDENEGQQG 110
Query: 206 KKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEKKIPL---- 258
K +T K L + ++R GL EW +
Sbjct: 111 DKKQITPKMALEIFRHMSA------EDVRIVGLSNDYARPEWMIITVLPVPPPPVRPSIK 164
Query: 259 --TGKG-VLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+G G DDLT+KL DII+ N + E G H+I E +LQFHVAT ND
Sbjct: 165 TDSGDGPAGEDDLTYKLGDIIRANGNVRLGEQEGTPQHIIEEFETLLQFHVATYMSNDTA 224
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G P+A+QKSG+P+KAI++RLKGK+GR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRS
Sbjct: 225 GQPQALQKSGRPVKAIRSRLKGKDGRVRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRS 284
Query: 376 IAQNMTFPEIVTPFNM 391
IA+ +T+PE VTP+N+
Sbjct: 285 IARTLTYPETVTPYNI 300
>gi|312273883|gb|ADQ57311.1| RNA polymerase II largest subunit, partial [Nosema sp. CO 05-11]
Length = 974
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 133/306 (43%), Positives = 176/306 (57%), Gaps = 48/306 (15%)
Query: 96 TKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEM 155
+K KIL C+CFYCS+L VS + LK + I+ + KGK +CEG
Sbjct: 1 SKIKKILECICFYCSRLKVSRKN-------LKNDLNA------IWAVSKGKMVCEG---- 43
Query: 156 DINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV 215
++ ++G GCG QP I++ GL+L A K ED+ E K+ L G+ V
Sbjct: 44 -------------ESTEEGFTGCGNKQPVIKKEGLNLVAFMK--GEDNTEGKVILNGEKV 88
Query: 216 LLNKKQGHGGCGR-YQPNIRRSGLDLTA---EWK-----HVNEDSQEKKIPLTGKGVLLD 266
H + +I G DL EW V S I + G D
Sbjct: 89 -------HSIFKKILDEDIEVLGFDLAYSRPEWLILTILLVPPPSVRPSIVMEGMLRAED 141
Query: 267 DLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGK 326
DLTHKL+DIIK N L + E GA H+I + ++LQFHVATL DND+ G P+A+QKSG+
Sbjct: 142 DLTHKLSDIIKSNTYLKKYEMEGAPGHIIRDYEQLLQFHVATLIDNDISGQPQALQKSGR 201
Query: 327 PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIV 386
PLK+I ARLKGKEGR+RGNLMGKRVDFSAR+VIT D N+ +++VGVP +A+ TFPE +
Sbjct: 202 PLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPLEVAKIHTFPEKI 261
Query: 387 TPFNMD 392
TPFN++
Sbjct: 262 TPFNIE 267
>gi|157741514|gb|ABV69462.1| RNA polymerase II largest subunit, partial [Verrucaria chiloensis]
Length = 999
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 180/325 (55%), Gaps = 30/325 (9%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHP-----KVRDVVLKTKGQSRRRQA 137
I LA PV+H GF+ K K+L VC C K+ S VRD ++R
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSEDLRYARSVRD--------RKKRFE 52
Query: 138 FIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK 197
I+ L + +N+C+ D + A++ + K HGGCG QP IR+SGL+L A++K
Sbjct: 53 LIWRLSQKQNVCQADPPDDEDDPIAKE----KTGKVRHGGCGNAQPAIRKSGLELWAQYK 108
Query: 198 HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE----- 249
D +E+ +P K + + + GL+L EW +
Sbjct: 109 PRKSDDEEEAVP--EKSQIWPAQALQVFQHLTDETLATLGLNLDFARPEWMILQSLPVPP 166
Query: 250 DSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHV 306
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HV
Sbjct: 167 PPVRPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHV 226
Query: 307 ATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLR 366
AT DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL
Sbjct: 227 ATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLS 286
Query: 367 IDQVGVPRSIAQNMTFPEIVTPFNM 391
+D+VGVPRSIA+ +T+PE VT FN+
Sbjct: 287 LDEVGVPRSIARTLTYPETVTRFNI 311
>gi|157741626|gb|ABV69518.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
Length = 999
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 181/322 (56%), Gaps = 24/322 (7%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K KIL VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKILETVCHNCGKIKALDSEELRYALSVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNK--KQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
+N+C+ +D E+PN L+ K + HGGCG QP IR++GL+L A++K
Sbjct: 58 SSKQNVCQADPPID-----EEEPN-LKEKAGRIKHGGCGNAQPAIRKTGLELWAQYKPRK 111
Query: 201 EDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQ 252
D +E+ +P K + + + GL L EW +
Sbjct: 112 GDEEEETVP--EKSQIWPAQALQIFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPV 169
Query: 253 EKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 170 RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPEHIAKELQALLQYHVATY 229
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
ND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+
Sbjct: 230 MGNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289
Query: 370 VGVPRSIAQNMTFPEIVTPFNM 391
VGVPRSIA+ +T+PE VT FN+
Sbjct: 290 VGVPRSIARTLTYPETVTRFNI 311
>gi|111278797|gb|ABH09096.1| RNA polymerase II largest subunit [Exophiala pisciphila]
Length = 378
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 132/321 (41%), Positives = 176/321 (54%), Gaps = 19/321 (5%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K KIL VC C K+ + + K + + RR A ++ L
Sbjct: 2 IKLATPVYHYGFMGKVKKILETVCHNCGKIKATEVCSEELKHAYKIRDRKRRFDA-VWRL 60
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNED 202
K + ICE D ++ + P + HGGCG QP IRR+GL L A WK +
Sbjct: 61 SKPRLICEADPPEDADQQPLKGPPPPK-----HGGCGNAQPEIRRTGLQLWATWKARKGE 115
Query: 203 SQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVN-----EDSQEK 254
+E P K + + GL+L EW ++
Sbjct: 116 DEEDTTP--DKKRIFPADVLRTFRTLTDETLELMGLNLDYARPEWMILSALPVPPPPVRP 173
Query: 255 KIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
I + G G DDLT KL DII+ N ++R E G H+ + +LQ+H+AT D
Sbjct: 174 SISVDGSGQGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLQDLLQYHIATYMD 233
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
N++ GL +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VG
Sbjct: 234 NEIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVG 293
Query: 372 VPRSIAQNMTFPEIVTPFNMD 392
VPRSIA+ +T PE VTPFN+D
Sbjct: 294 VPRSIARTLTCPETVTPFNLD 314
>gi|157741522|gb|ABV69466.1| RNA polymerase II largest subunit, partial [Placidium arboreum]
Length = 989
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 131/321 (40%), Positives = 181/321 (56%), Gaps = 22/321 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSEELRYALSVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 201
+ +N+C+ + D +DP + + K HGGCG QP IR+SGL+L A+ K
Sbjct: 58 SQKQNVCQAD-----SPDDEDDPVAKEKSGKVRHGGCGNAQPAIRKSGLELWAQCKPRKS 112
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVNE-----DSQE 253
D +E+ + + K + + + GL+L EW +
Sbjct: 113 DDEEETV--SEKSQIWPAQALQVFQHLTDETLETLGLNLDFARPEWMILQSLPVPPPPVR 170
Query: 254 KKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 171 PSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRIHAEGAPDHIAKELQALLQYHVATYM 230
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+V
Sbjct: 231 DNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEV 290
Query: 371 GVPRSIAQNMTFPEIVTPFNM 391
GVPRSIA+ +T+PE VT FN+
Sbjct: 291 GVPRSIARTLTYPETVTRFNI 311
>gi|157741530|gb|ABV69470.1| RNA polymerase II largest subunit, partial [Placopyrenium bucekii]
Length = 989
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 182/329 (55%), Gaps = 36/329 (10%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHP-----KVRDVVLKTKGQSRRRQA 137
I LA PV+H GF+ K K+L VC C K+ S VRD ++R
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVESEELRYAHSVRD--------RKKRFE 52
Query: 138 FIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQG---HGGCGRYQPNIRRSGLDLTA 194
I+ L + +N+C+ + D +DP + +K G HGGCG QP IR++GL+L A
Sbjct: 53 LIWRLSQKQNVCQAD-----SPDDEDDP--IAKEKGGKIRHGGCGNVQPAIRKTGLELWA 105
Query: 195 EWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-- 249
++K D +E+ +P K + + + GL + EW +
Sbjct: 106 QYKPRKGDDEEETVP--EKSQIWPAQALQVFQHLTDETLETLGLSVDFARPEWMILQSLP 163
Query: 250 ---DSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ
Sbjct: 164 VPPPPVRPSITVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQ 223
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
+HVAT DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DP
Sbjct: 224 YHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDP 283
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
NL +D+VGVPRSIA+ +T+PE VT FN++
Sbjct: 284 NLSLDEVGVPRSIARTLTYPETVTRFNIE 312
>gi|157741564|gb|ABV69487.1| RNA polymerase II largest subunit, partial [Placopyrenium canellum]
Length = 999
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 133/329 (40%), Positives = 182/329 (55%), Gaps = 36/329 (10%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHP-----KVRDVVLKTKGQSRRRQA 137
I LA PV+H GF+ + K+L VC C K+ S VRD ++R
Sbjct: 1 IKLAVPVYHYGFLGRVKKLLETVCHNCGKIKAVDSEELRYAHSVRD--------RKKRFE 52
Query: 138 FIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQG---HGGCGRYQPNIRRSGLDLTA 194
I+ L + +N+C+ + D +DP + +K G HGGCG QP IR++GL+L A
Sbjct: 53 LIWRLSQKQNVCQAD-----SPDDEDDP--IAKEKSGKIRHGGCGNAQPAIRKTGLELWA 105
Query: 195 EWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-- 249
++K D +E+ +P K + + + GL + EW +
Sbjct: 106 QYKPRKGDDEEEAVP--EKSQIWPAQALQVFQHLTDETLETLGLSVDFARPEWMILQSLP 163
Query: 250 ---DSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ
Sbjct: 164 VPPPPVRPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQ 223
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
+HVAT DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DP
Sbjct: 224 YHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDP 283
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
NL +D+VGVPRSIA+ +T+PE VT FN++
Sbjct: 284 NLSLDEVGVPRSIARTLTYPETVTRFNIE 312
>gi|113707386|gb|ABI36592.1| RNA polymerase II largest subunit [Megalospora tuberculosa]
Length = 372
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 137/361 (37%), Positives = 178/361 (49%), Gaps = 112/361 (31%)
Query: 88 PVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKN 147
PVF +GF+ K K+L VC C K+LV S+P D L+ + RR A ++ LCK K
Sbjct: 2 PVFXIGFLNKIKKLLETVCHNCGKILVDESNPGFVDA-LRMRDPKRRFDA-VWRLCKPKM 59
Query: 148 ICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKK 207
ICE D +E+S++ K
Sbjct: 60 ICETSMPAD-------------------------------------------DENSEKSK 76
Query: 208 IPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK---------------------- 245
P K HGGCG QP +RR L LT WK
Sbjct: 77 EP----------KHDHGGCGNIQPEVRREALKLTGTWKAQKGDEENEGQQAEKKPITPQM 126
Query: 246 ------HVNEDSQEK---------------------------KIPLTGKGVLL--DDLTH 270
H++ D +K I + G G + DDLT+
Sbjct: 127 ALNIFRHISPDEIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISMDGAGGMRGEDDLTY 186
Query: 271 KLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKA 330
KL DII+ N + R + G+ HV+ E +LQFHVAT DND+ GLP+A+QKSG+P+K+
Sbjct: 187 KLGDIIRANGNVKRCDLDGSPAHVVQEFENLLQFHVATYMDNDIAGLPQALQKSGRPVKS 246
Query: 331 IKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN 390
I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N
Sbjct: 247 IRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYN 306
Query: 391 M 391
+
Sbjct: 307 I 307
>gi|226876233|gb|ACO89437.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN508]
Length = 983
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 172/313 (54%), Gaps = 26/313 (8%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+TK KIL VC C K+ S + ++ + +RR ++ L K +NICE
Sbjct: 1 GFMTKVKKILETVCHNCGKIKALDSEDLRHALSIRDR---KRRFDAVWRLSKPRNICEA- 56
Query: 153 DEMDINKDGAEDPNSLQNKKQG--HGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPL 210
D EDP + HGGCG QP+IRR+GL L A WK + E P
Sbjct: 57 -------DPPEDPEAPAKGAPAVRHGGCGNAQPDIRRTGLQLWASWKPKKGEDDEDITP- 108
Query: 211 TGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVNE-----DSQEKKIPLTGKG 262
K + + + + GL L EW + I + G G
Sbjct: 109 -DKKRIFPQDALNTFRLLTDETLEAMGLSLDYARPEWMILQALPVPPPPVRPSISVDGSG 167
Query: 263 V---LLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPR 319
DDLT KL DII+ N ++R E G H+ + +LQ+H+AT DND+ GL +
Sbjct: 168 QGQHSEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDNDIAGLDK 227
Query: 320 AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 379
A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 AQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 287
Query: 380 MTFPEIVTPFNMD 392
+T+PEIVTPFN+D
Sbjct: 288 LTYPEIVTPFNID 300
>gi|157741532|gb|ABV69471.1| RNA polymerase II largest subunit, partial [Placopyrenium bucekii]
Length = 999
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 182/329 (55%), Gaps = 36/329 (10%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHP-----KVRDVVLKTKGQSRRRQA 137
I LA PV+H GF+ K K+L VC C K+ S VRD ++R
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSEELRYAHSVRD--------RKKRFE 52
Query: 138 FIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQG---HGGCGRYQPNIRRSGLDLTA 194
I+ L + +N+C+ + D +DP + +K G HGGCG QP IR++GL+L A
Sbjct: 53 LIWRLSQKQNVCQAD-----SPDDEDDP--IAKEKGGKIRHGGCGNVQPAIRKTGLELWA 105
Query: 195 EWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-- 249
++K D +E+ +P K + + + GL + EW +
Sbjct: 106 QYKPRKGDDEEETVP--EKSQIWPAQALQVFQHLTDETLETLGLSVDFARPEWMILQSLP 163
Query: 250 ---DSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ
Sbjct: 164 VPPPPVRPSITVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQ 223
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
+HVAT DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DP
Sbjct: 224 YHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDP 283
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
NL +D+VGVPRSIA+ +T+PE VT FN++
Sbjct: 284 NLSLDEVGVPRSIARTLTYPETVTRFNIE 312
>gi|323454233|gb|EGB10103.1| hypothetical protein AURANDRAFT_36761 [Aureococcus anophagefferens]
Length = 1738
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 137/339 (40%), Positives = 186/339 (54%), Gaps = 47/339 (13%)
Query: 77 PGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQ 136
PGHFGHI+LA+P +H+G++ + + LRCVCF+CS+L+ PS KV+ K ++++R
Sbjct: 10 PGHFGHIELARPCYHLGYIKEVLMCLRCVCFHCSRLMADPSDYKVQGA---QKYKAQKRL 66
Query: 137 AFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHG--GCGRYQPNIRRSGLDLTA 194
++ LC+ K CE GAE ++ + +Q GCG QP RR TA
Sbjct: 67 EAMHGLCRSKKRCEFA-------TGAELQQAIMDGEQEGAVYGCGALQPTFRRR----TA 115
Query: 195 EWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQ-------PNIRRSGLD---LTAEW 244
+ V E+ IP TG ++KQ Y+ + + GLD EW
Sbjct: 116 QSIEVEFQPDEETIPGTG-----DRKQILSAHRAYEVLRNISDKDAKMLGLDPKFARPEW 170
Query: 245 ----------KHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
HV Q + DDLTH+L +I+K N L +G A HV
Sbjct: 171 LLITVLPVAPPHVRPSIQLSDSNARSE----DDLTHQLVNIVKANKTLESLCRAGEANHV 226
Query: 295 IAENIKMLQFHVATLTDNDMPGLP--RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 352
+++ ++LQ+ V L DN+ + Q+ GKPLK I+ RLKGKEGRIRGNLMGKRVD
Sbjct: 227 VSQFEELLQYKVNALFDNEANAKDGVQERQRGGKPLKTIRQRLKGKEGRIRGNLMGKRVD 286
Query: 353 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
FSARTVIT DPNL IDQVGVPRSIA+ +T PE V P+N+
Sbjct: 287 FSARTVITADPNLSIDQVGVPRSIAKTLTVPERVAPYNV 325
>gi|167042230|gb|ABZ06962.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
crenarchaeote HF4000_ANIW93I24]
Length = 1264
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 136/393 (34%), Positives = 208/393 (52%), Gaps = 46/393 (11%)
Query: 10 LRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQT 68
++ + ++F + SP+EIR+ SV E + PET E G GGLMD R G ++ +C T
Sbjct: 6 VKAIAGIKFCVWSPNEIRKYSVVE--VTAPETYDEDGMAVQGGLMDGRLGTLEPGQKCLT 63
Query: 69 CAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKT 128
C CPGHFGH++L++PV H+ F+ K+L+ C CS+L KV VL
Sbjct: 64 CGNTSARCPGHFGHVELSEPVLHIAFIDNIHKLLQATCRSCSRL-------KVPQEVLDE 116
Query: 129 KGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRS 188
+ ++ +A +++ K I E E K E P+ CG+ Q + +
Sbjct: 117 FSKLKKYRAS-FNVISQKRIPEQIFEK--AKKSKECPH-----------CGKIQNELIFT 162
Query: 189 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 248
+ E + E+ + +P+T + L Y R EW +
Sbjct: 163 KPTIFIEKTELGEN---RLLPITIRERFLQITDDDLELVNYNTATAR------PEWFIL- 212
Query: 249 EDSQEKKIP-LTGKGVLL--------DDLTHKLADIIKCNNELIRNESSGAATHVIAENI 299
Q +P +T + ++ DDLTHK+ DII+ N L ++ +G ++ + +
Sbjct: 213 ---QALPVPPVTVRPSIILESGIRSEDDLTHKMVDIIRVNQRLKESKEAGTPPLIVQDLV 269
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
+LQ+H T DN++ G+P+A +SG+PLK + RLKGKEGR RG+L GKRVDFS+RTVI
Sbjct: 270 DLLQYHCTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVI 329
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+PDPNL + +VGVP SIA +T PEIVT +N++
Sbjct: 330 SPDPNLDLGEVGVPTSIASKLTIPEIVTEWNIE 362
>gi|119643711|gb|ABL85584.1| RNA polymerase II largest subunit [Vulpicida pinastri]
Length = 996
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 125/276 (45%), Positives = 164/276 (59%), Gaps = 29/276 (10%)
Query: 133 RRRQAFIYDLCKGKNICEGGDEMDIN--KDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGL 190
++R ++ LCK K ICE +D + D A++P K HGGCG QP +RR GL
Sbjct: 51 KKRFDSVWRLCKPKMICETTMALDDDAPSDKAKEP------KHDHGGCGNIQPEVRREGL 104
Query: 191 DLTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTA 242
LT WK NE Q +K P+T + L + +I+R GL
Sbjct: 105 KLTGTWKAQKGDEENEGQQPEKKPITPQMALNIFRHISAD------DIKRMGLSNDYARP 158
Query: 243 EWKHVNEDSQEKKIPLTGKGVL-------LDDLTHKLADIIKCNNELIRNESSGAATHVI 295
EW + V DDLT+KL DII+ N + R E+ G+ HV+
Sbjct: 159 EWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVV 218
Query: 296 AENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 355
E ++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSA
Sbjct: 219 NEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSA 278
Query: 356 RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 279 RTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 314
>gi|226876245|gb|ACO89443.1| RNA polymerase II largest subunit, partial [Arachniotus littoralis]
Length = 992
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 132/317 (41%), Positives = 182/317 (57%), Gaps = 25/317 (7%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+TK K+L VC C K+ + S K D L+ + RR A I+ L K ICE
Sbjct: 1 GFLTKIKKLLETVCHNCGKIKANTSDQKYLDA-LRFRDPKRRFDA-IWRLSKDVLICEAD 58
Query: 153 ---DEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-HVNEDSQEKKI 208
D+ K+GA P+ +GHGGCG QP IR+ GL L WK + N D ++ +
Sbjct: 59 PTDDDEPFGKEGASKPS------KGHGGCGNSQPTIRKEGLTLVGTWKPNKNRDIMDEDM 112
Query: 209 PLTGKGVLLNKKQGHGGCGR--YQPNIRRSGLD---LTAEWKHVNEDSQEKKIPL----- 258
+ Q R + ++R GL EW +
Sbjct: 113 DMQQPEKRTITPQMALNIFRNVSEDDVRIIGLSNDYARPEWMIITVLPVPPPPVRPSVLV 172
Query: 259 --TGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+G G DDLT+KLA+I++ N ++ ES+G+ HV+ E +LQ+HVAT DND+
Sbjct: 173 GGSGSGQRGEDDLTYKLAEIVRANGNVLECESAGSPEHVVREFEALLQYHVATYMDNDIA 232
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G P+AMQKS +P+KA++ RLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVP++
Sbjct: 233 GQPQAMQKSNRPVKALRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKT 292
Query: 376 IAQNMTFPEIVTPFNMD 392
IAQ +T+PE+VTP+N++
Sbjct: 293 IAQTLTYPEVVTPYNIN 309
>gi|119514053|gb|ABL75799.1| RNA polymerase II largest subunit [Porpidia speirea]
Length = 315
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 132/307 (42%), Positives = 173/307 (56%), Gaps = 36/307 (11%)
Query: 105 VCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAED 164
VC C K+LV S P RD + ++ I+ LCK K CE G ED
Sbjct: 2 VCHNCGKILVDESDPXFRDXLXFR--DPKKXFXAIWXLCKPKRKCE-------TTXGQED 52
Query: 165 PNSLQNK--KQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLL 217
+ + K K HGGCG P +RR GL L WK NE Q +K P+T + L
Sbjct: 53 DSLDKTKEPKHDHGGCGNTHPEVRREGLKLIGTWKAQKGEEENEGQQPEKKPITPQMAL- 111
Query: 218 NKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVLL-- 265
R+ +I+ GL EW + I + G +
Sbjct: 112 -------NIFRHISTEDIKTMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGMRGE 164
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
DDLT+KL DII+ N + R E+ G+ H++ E +LQFHVAT DND+ G P+A+QKSG
Sbjct: 165 DDLTYKLGDIIRANGNVQRCETEGSPAHIVTEFEHLLQFHVATYMDNDIAGQPQALQKSG 224
Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE
Sbjct: 225 RPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPET 284
Query: 386 VTPFNMD 392
VTP+N++
Sbjct: 285 VTPYNIE 291
>gi|407464207|ref|YP_006775089.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus sp. AR2]
gi|407047395|gb|AFS82147.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus sp. AR2]
Length = 1263
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 135/397 (34%), Positives = 204/397 (51%), Gaps = 46/397 (11%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSS 64
S ++ + ++F + SP EIR+ SV E I PET E G P GGLMD R G ++
Sbjct: 2 SVQAIKAIDGIRFSVWSPTEIRKYSVAE--ITAPETYDEDGMPVQGGLMDGRLGTLEPGQ 59
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
+C TC CPGHFGHI+LA+P+ H+ F+ K+L+ C C++L KV
Sbjct: 60 KCLTCGNTAARCPGHFGHIELAEPILHIAFIDNIYKLLQSTCRSCARL-------KVPQE 112
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPN 184
L+ + + + A Y + K I E ++ K E P+ CG+ Q
Sbjct: 113 DLEAFKRIKDKHA-AYTVVSQKRIPE--QIIEKAKKAKECPH-----------CGKTQYE 158
Query: 185 IRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEW 244
+ + + E + E + +P+T + Y P R EW
Sbjct: 159 LVFTKPTIFVEKTEIGE---HRLLPITIRERFSQILDEDLELLSYDPITAR------PEW 209
Query: 245 KHVNEDSQEKKIP--------LTGKGVLLDD-LTHKLADIIKCNNELIRNESSGAATHVI 295
+ Q +P + G+ +D LTHK+ DII+ N L ++ +G ++
Sbjct: 210 FIL----QALPVPPVTVRPSIILETGIRSEDDLTHKMVDIIRVNQRLKESKEAGTPPLIV 265
Query: 296 AENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 355
+ + +LQ+H T DN++ G+P+A +SG+PLK + RLKGKEGR RG+L GKRVDFS+
Sbjct: 266 QDLVDLLQYHSTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSS 325
Query: 356 RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
RTVI+PDPNL + +VGVP +A +T PEIVT +N++
Sbjct: 326 RTVISPDPNLDLSEVGVPEQVAMKLTIPEIVTEWNIE 362
>gi|125657566|gb|ABN48846.1| RNA polymerase II largest subunit [Bulimina marginata]
Length = 518
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 132/332 (39%), Positives = 190/332 (57%), Gaps = 29/332 (8%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
++LA P +HVGF+ T+++LRCVC+ CS+LL + + L+ R R I L
Sbjct: 1 MELAGPCYHVGFLPVTLRVLRCVCYNCSRLLCADQNGDAFKAALRI-NNPRERLVEILHL 59
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRR-SGLDLTAEWKHVNE 201
C+ K C GD++D +DG ED ++ + + + GCG QP R+ +G+ + E+ N+
Sbjct: 60 CEKKKFCGSGDKID--EDGDED---MKEENKVYSGCGHAQPKYRKGTGVKIEIEFPERND 114
Query: 202 DS-QEKKIPLTGKGVLLN-KKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDSQEKKIPL 258
S +++K L V K+ C + + S D L + V+ + + +
Sbjct: 115 QSGEDRKQYLPALRVHETFKRISEKDCRVLGFDTKYSPPDWLLIQVLPVSPPAVRPFVLM 174
Query: 259 TGKGVLLDDLTHKLADIIKCNNEL-------------------IRNESSGAATHVIAENI 299
G DDLTHK+ DI+K NN L R E+ G HV+ E +
Sbjct: 175 DGMRPSQDDLTHKIYDIMKTNNALKRLCIQTRNVFYVSMSQNIYRQEARGVPEHVLEELV 234
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
++LQFHV T+ DN++ G P+A QKSGKP+K+++ RL GK GR+RGNLMGKR DFSARTVI
Sbjct: 235 ELLQFHVTTMIDNEVTGQPQAKQKSGKPIKSLRERLVGKAGRVRGNLMGKRCDFSARTVI 294
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DPNL ID+VGVPRSIA N+T+PE VT FN+
Sbjct: 295 GGDPNLSIDEVGVPRSIALNLTYPERVTKFNL 326
>gi|119643612|gb|ABL85579.1| RNA polymerase II largest subunit [Parmotrema reticulatum]
Length = 358
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 130/298 (43%), Positives = 174/298 (58%), Gaps = 35/298 (11%)
Query: 113 LVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNK- 171
L+ S+P D + + ++R ++ LCK K ICE +D ++P S ++K
Sbjct: 23 LMKLSNPAFADAIRRR--DPKKRFDMVWRLCKPKMICETTMALD------DEPPSDKSKE 74
Query: 172 -KQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGG 225
K HGGCG QP +RR GL LT WK NE Q +K P+T + L
Sbjct: 75 AKHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPEKKPITPQMAL--------N 126
Query: 226 CGRY--QPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGKGVL-------LDDLTHKLA 273
R+ +I+R GL EW + V DDLT+KL
Sbjct: 127 IFRHISTEDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLTYKLG 186
Query: 274 DIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKA 333
DII+ N + R E+ G+ HV+ E ++LQFHVAT DND+ G P+A+QKSG+P+K+I+A
Sbjct: 187 DIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRA 246
Query: 334 RLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 247 RLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 304
>gi|123979322|gb|ABM81486.1| RNA polymerase II largest subunit [Myelochroa aurulenta]
Length = 984
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 127/292 (43%), Positives = 169/292 (57%), Gaps = 31/292 (10%)
Query: 117 SHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHG 176
S+P D + + ++R ++ LCK K ICE M ++ D D + K HG
Sbjct: 25 SNPAFADAIRRR--DPKKRFDLVWRLCKPKMICE--TTMALDDDAPSDKT--KETKHDHG 78
Query: 177 GCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-- 229
GCG QP +RR GL LT WK NE Q +K P+T + L R+
Sbjct: 79 GCGNMQPEVRREGLRLTGTWKAQKGDEENEGQQPEKKPITPQMAL--------NIFRHIS 130
Query: 230 QPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGKGVL-------LDDLTHKLADIIKCN 279
+I++ GL EW + V DDLT+KL DII+ N
Sbjct: 131 TEDIKKIGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLTYKLGDIIRAN 190
Query: 280 NELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKE 339
+ R E+ G+ HV+ E ++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKE
Sbjct: 191 GNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKE 250
Query: 340 GRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
GR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 251 GRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 302
>gi|226876253|gb|ACO89447.1| RNA polymerase II largest subunit, partial [Byssochlamys nivea]
Length = 360
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 134/312 (42%), Positives = 182/312 (58%), Gaps = 20/312 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+ + S PK + L+T+ +RR I+ L K ICE
Sbjct: 1 FLTKIKKLLETVCHNCGKIKANTSDPKFLEA-LRTR-DPKRRFDQIWRLSKDVLICEADP 58
Query: 154 EMDINKDGAEDPNSLQNKK--QGHGGCGRYQPNIRRSGLDLTAEWK---HVNEDS---QE 205
D ++P S + K + HGGCG QP IRR G+ L WK ++ ED Q
Sbjct: 59 PPD-----EDEPFSKEGSKPLRTHGGCGNAQPTIRREGISLVGTWKPNKNMMEDEDMQQP 113
Query: 206 KKIPLTGKGVL-LNKKQGHGGC---GRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 261
+K P+T + L + + H G R + +T + +G
Sbjct: 114 EKKPITPQMALNVFRSISHEDVRIMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGT 173
Query: 262 GVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRA 320
G DDLT+KLA+I++ N + R E G+ HV+ E +LQ+HVAT DND+ G P+A
Sbjct: 174 GQRGEDDLTYKLAEIVRANQNVQRCEQEGSPEHVVREFESLLQYHVATYMDNDIAGQPKA 233
Query: 321 MQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNM 380
MQKS +P+KAI+ RLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +
Sbjct: 234 MQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 293
Query: 381 TFPEIVTPFNMD 392
T+PE+VTP+N+D
Sbjct: 294 TYPEVVTPYNID 305
>gi|399569176|gb|AFP47206.1| ribosomal polymerase II largest subunit, partial [Beauveria lii]
Length = 954
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 180/310 (58%), Gaps = 19/310 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC CSK+L S P+ + + R ++ ++ +CK K CE +
Sbjct: 1 FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKR--VWAVCKKKRKCENEE 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D NKD P +GHGGCG QP +R++ L L A ++ +E+ ++K +
Sbjct: 59 RQDKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVTSEEGPKRK-----E 113
Query: 214 GVLLNKKQGHGGCGRY-QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVL 264
V ++ + HG R + ++ GL+ EW + I + G G
Sbjct: 114 TVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 173
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT+KL DII+ N + + G+ H+ + ++LQ+HVAT DND+ G PRA+
Sbjct: 174 TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 233
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
QKSG+P+KAI+ARLKGKEGR+RG+LMGKRVDFSART IT D NL + +VGVPRSIA+ +T
Sbjct: 234 QKSGRPVKAIRARLKGKEGRLRGSLMGKRVDFSARTDITGDANLSLHEVGVPRSIARTLT 293
Query: 382 FPEIVTPFNM 391
+PE VTP+N+
Sbjct: 294 YPETVTPYNI 303
>gi|322510715|gb|ADX06029.1| putative DNA-directed RNA polymerase II [Organic Lake phycodnavirus
1]
Length = 1464
Score = 214 bits (544), Expect = 8e-53, Method: Composition-based stats.
Identities = 145/406 (35%), Positives = 202/406 (49%), Gaps = 86/406 (21%)
Query: 16 VQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTE 75
+QF ILSP+EI R SV E I +T G +PK+GGL DPR GV+D C T N
Sbjct: 11 IQFSILSPEEIVRNSVAE--ITSKDTYNGIKPKIGGLFDPRMGVLDPGMICPTDGENYIN 68
Query: 76 CPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRR 135
CPG+FGHI LAKPVF++ + + KIL+CVCF CSKLL+S D + + R
Sbjct: 69 CPGYFGHIVLAKPVFYIQYFSTISKILKCVCFKCSKLLISK-----EDYMNILNFKYNER 123
Query: 136 QAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGH---GGCGRYQPNIRRSGLD- 191
+ +C N+L+ ++ G GCG QP I++ G
Sbjct: 124 WDAFFQIC----------------------NNLKPRRCGEYTKNGCGCLQPKIKKEGYST 161
Query: 192 LTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDL---TAEWKH-- 246
L AEW NE+ + I T + V+ K+ I +D +++W
Sbjct: 162 LMAEW--TNENKETMAIKYTPEMVIKIFKK-----------ITNEDIDFMGFSSKWSRPE 208
Query: 247 -----------------VNEDSQEKK-----IPLTGKGVLLDDLTHKLADIIKCNNELIR 284
V +DSQ++ + + L K++D NN++I
Sbjct: 209 WMICQIFAVPPPAVRPSVKQDSQQRSEDDITHIIINIIKFNNSLKEKMSDP-DSNNKMIE 267
Query: 285 NESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRG 344
+ + +LQ+++ATL DN++PG Q+SG+ LK+I R KGK GR+RG
Sbjct: 268 DWTC------------LLQYYIATLVDNNIPGTSPVTQRSGRALKSITERHKGKTGRVRG 315
Query: 345 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN 390
NLMGKRVDFSAR+VITPDP L I ++GVP IA N+T P VT N
Sbjct: 316 NLMGKRVDFSARSVITPDPELSIVELGVPIKIAMNITKPVYVTNEN 361
>gi|226876225|gb|ACO89433.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN488]
Length = 985
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 135/310 (43%), Positives = 177/310 (57%), Gaps = 20/310 (6%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+TK KIL VC C K+ + S ++R V LK++ RR A I+ L K K ICE
Sbjct: 1 GFMTKVKKILETVCHNCGKIKATDSE-ELR-VALKSRDPKRRFDA-IWKLSKPKLICEAD 57
Query: 153 DEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTG 212
D D + +P Q K HGGCG QP IRR+GL L A W + +E P
Sbjct: 58 PPED--ADASFNPKGPQLPK--HGGCGNAQPKIRRTGLQLWASWDARKGEDEEDTTP--E 111
Query: 213 KGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQEKKIPLTGKGVL 264
K + + + I GL+ EW ++ + I + G G
Sbjct: 112 KKRIFPQDALNTFRTLTDETIETMGLNANFAHPEWMILSALPVPPPAVRPSISVDGSGQG 171
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT KL DII+ N ++R E G H+ + +LQ+H+AT DND+ GL +A
Sbjct: 172 SRGEDDLTFKLGDIIRANQAVLRTEVDGTPEHIKVDLCDLLQYHIATYMDNDIAGLDKAQ 231
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T
Sbjct: 232 HKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLT 291
Query: 382 FPEIVTPFNM 391
+PE VTPFN+
Sbjct: 292 YPETVTPFNI 301
>gi|407461850|ref|YP_006773167.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045472|gb|AFS80225.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus koreensis AR1]
Length = 1263
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 135/393 (34%), Positives = 203/393 (51%), Gaps = 46/393 (11%)
Query: 10 LRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQT 68
++ + ++F + SP EIR+ SV E I PET E G P GGLMD R G ++ +C T
Sbjct: 6 VKAIDGIRFSVWSPTEIRKYSVAE--ITAPETYDEDGMPVQGGLMDGRLGTLEPGQKCLT 63
Query: 69 CAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKT 128
C CPGHFGH++LA+PV H+ F+ K+L+ C C++L V P+ V KT
Sbjct: 64 CGNTAARCPGHFGHLELAEPVLHIAFIDNIYKLLQSTCRSCARLKV----PQEDLDVFKT 119
Query: 129 KGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRS 188
+ + Y + K I E ++ K E P+ CG+ Q + +
Sbjct: 120 I----KDKHAAYTVISQKRIPE--QIIEKAKKAKECPH-----------CGKTQYELIFT 162
Query: 189 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 248
+ E + E + +P+T + Y P R EW +
Sbjct: 163 KPTIFVEKTEIGE---HRLLPITIRERFSQILDEDLELLSYDPITAR------PEWFVL- 212
Query: 249 EDSQEKKIP--------LTGKGVLLDD-LTHKLADIIKCNNELIRNESSGAATHVIAENI 299
Q +P + G+ +D LTHK+ DII+ N L ++ +G ++ + +
Sbjct: 213 ---QAFPVPPVTVRPSIILETGIRSEDDLTHKMVDIIRVNQRLKESKDAGTPPLIVQDLV 269
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
+LQ+H T DN++ G+P+A +SG+PLK + RLKGKEGR RG+L GKRVDFS+RTVI
Sbjct: 270 DLLQYHTTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVI 329
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+PDPNL + +VGVP +A +T PEIVT +N++
Sbjct: 330 SPDPNLDLSEVGVPEVVAMKLTIPEIVTEWNIE 362
>gi|394998777|gb|AFN44307.1| RNA polymerase II largest subunit, partial [Teloschistes flavicans]
Length = 357
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 133/316 (42%), Positives = 181/316 (57%), Gaps = 30/316 (9%)
Query: 92 VGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEG 151
+GF+ K+L VC C K+LV S+P + L+ + RR A I+ LCK K +CE
Sbjct: 1 IGFLRHIKKLLETVCHNCGKILVDESNPAFAEA-LRHRDPKRRFDA-IWRLCKPKLVCET 58
Query: 152 GD-EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQE 205
+ D D + +P + HGGCG QP IR+ L L WK +E Q
Sbjct: 59 TPPQTDDQLDRSGEP------RHDHGGCGNVQPEIRKEALALNGTWKAQKGDDEHEGQQA 112
Query: 206 KKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIP 257
+K P+T + L + +I++ GL EW + I
Sbjct: 113 EKKPITPQMALSVFRN------ISTDDIKKMGLSNDYARPEWMIITVLPVPPPPVRPSIS 166
Query: 258 LTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+ G L DDLT+KL DII+ N + R + G+ H+ E +LQFHVAT DN++
Sbjct: 167 MDGANGLRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLTQEFENLLQFHVATYMDNNIA 226
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
GL +A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRS
Sbjct: 227 GLGQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRS 286
Query: 376 IAQNMTFPEIVTPFNM 391
IA+ +T+PE VTP+N+
Sbjct: 287 IAKTLTYPETVTPYNI 302
>gi|226876150|gb|ACO89396.1| RNA polymerase II largest subunit, partial [Capronia fungicola]
Length = 984
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 173/313 (55%), Gaps = 26/313 (8%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+ K KIL VC C K+ S + L+ + +RR ++ L K +NICE
Sbjct: 2 GFMNKVKKILETVCHNCGKIKALDSEDLRHALSLRDR---KRRFDAVWRLSKARNICEA- 57
Query: 153 DEMDINKDGAEDPNS-LQNKKQ-GHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPL 210
D EDP+ L+ Q HGGCG QP+IRR+GL L A WK + E P
Sbjct: 58 -------DPPEDPDQPLKGPPQPKHGGCGNLQPDIRRTGLQLWATWKPRKGEDDEDTTP- 109
Query: 211 TGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVNE-----DSQEKKIPLTGKG 262
K + + + + GL L EW + I + G G
Sbjct: 110 -DKKRIFPQDALNTFRTLSDETLEMMGLSLDYARPEWMILTALPVPPPPVRPSISVDGSG 168
Query: 263 VLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPR 319
DDLT KL DII+ N ++R E G H+ + +LQ+H+AT DN++ GL +
Sbjct: 169 QGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDNEIAGLDK 228
Query: 320 AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 379
A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 229 AQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 288
Query: 380 MTFPEIVTPFNMD 392
+T+PE VTPFN+D
Sbjct: 289 LTYPETVTPFNLD 301
>gi|119643686|gb|ABL85583.1| RNA polymerase II largest subunit [Punctelia rudecta]
Length = 386
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 128/292 (43%), Positives = 169/292 (57%), Gaps = 31/292 (10%)
Query: 117 SHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHG 176
S+P D V + ++R ++ LCK K ICE M ++ + D + K HG
Sbjct: 44 SNPAFADAVRRR--DPKKRFDMVWRLCKPKMICE--TTMALDDEAPSD--KTKEPKHDHG 97
Query: 177 GCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-- 229
GCG QP +RR GL LT WK NE Q +K P+T + L R+
Sbjct: 98 GCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPEKKPITPQMAL--------NIFRHIS 149
Query: 230 QPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGKGVL-------LDDLTHKLADIIKCN 279
+I+R GL EW + V DDLT+KL DII+ N
Sbjct: 150 TEDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLTYKLGDIIRAN 209
Query: 280 NELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKE 339
+ R E+ G+ HV+ E ++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKE
Sbjct: 210 GNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKE 269
Query: 340 GRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
GR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 270 GRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 321
>gi|21280521|gb|AAM45153.1|AF395835_1 RNA polymerase II largest subunit [Cercomonas ATCC50319]
Length = 1014
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 134/324 (41%), Positives = 179/324 (55%), Gaps = 17/324 (5%)
Query: 76 CPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRR 135
CPGHFGH++LAKPV HV F+ +K+LRCVC++CS L VS + + + + K +R
Sbjct: 1 CPGHFGHLELAKPVIHVSFLPTILKLLRCVCYHCSALXVSRDNRRFLEAA-RVKNPKKRL 59
Query: 136 QAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAE 195
A + ++C+ C GG E+D DG E P +K+ GCG P RR G+ + E
Sbjct: 60 NAML-EVCRTAKDCGGGLELD-PVDG-ERP---AEEKKKRTGCGSTLPTYRRDGIKIIVE 113
Query: 196 WKHVNE-------DSQEKKIPLTGKGVLLN-KKQGHGGCGRYQPNIRRSGLDLTAEWKHV 247
+ E D ++ P + N + G N S LT V
Sbjct: 114 FPANTEFEDAGSVDRKKNLSPQKIYDIFRNITDEDMTALGLDPVNAHPSWFLLTV--LPV 171
Query: 248 NEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVA 307
+ L DDLT+KL DI+K N +L + E+ GAA H++ + +LQF VA
Sbjct: 172 PPPPVRPSVMLDASTRASDDLTYKLGDIVKHNEQLKKQEAQGAAEHILQDTHDLLQFSVA 231
Query: 308 TLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRI 367
TL D ++ GLPR+ + + RL GK GRIRGNLMGKRVDFSARTVIT DPNL +
Sbjct: 232 TLFDXEISGLPRSDNEVVRLSNQFVKRLVGKGGRIRGNLMGKRVDFSARTVITGDPNLSV 291
Query: 368 DQVGVPRSIAQNMTFPEIVTPFNM 391
DQVGVPRSIA +TFPE+VT FN+
Sbjct: 292 DQVGVPRSIAMTLTFPEMVTRFNI 315
>gi|13274156|emb|CAC33868.1| RNA polymerase II largest subunit [Trachipleistophora hominis]
Length = 1056
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 177/319 (55%), Gaps = 53/319 (16%)
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIY 140
GHI+L +PVFHVG++ K K+L VCFYCS++ K DV +G R+ ++ +
Sbjct: 1 GHIELTRPVFHVGYMNKIKKLLETVCFYCSRI-------KAYDV--HKEGVHRQGLSYFW 51
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
LCKGK C C QP I+R GL L A +
Sbjct: 52 GLCKGKTQCMH--------------------------CQSKQPLIKRDGLSLIAFIR--G 83
Query: 201 EDSQEKKIPLTGKGV-LLNKKQGHGGCGRYQPNIRRSGLD---LTAEWK-----HVNEDS 251
ED+ E K+ L G+ V + K+ C G D EW +V +
Sbjct: 84 EDNTEGKVILNGERVHTVFKRISTEEC-------EALGFDEQYARPEWMIISVLNVPPPA 136
Query: 252 QEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
+ L G DDLTHKLADI+K N L + E GA H+I + +LQ+HVATL D
Sbjct: 137 VRPSVVLEGMLRGEDDLTHKLADIVKANANLAKYEREGAPGHIIRDYESLLQYHVATLMD 196
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
N++PGLP+++QKSG+PLK++ ARLKGKEGR+RGNLMGKRVD SAR+VI+PD N+ + +VG
Sbjct: 197 NNIPGLPQSLQKSGRPLKSLSARLKGKEGRVRGNLMGKRVDSSARSVISPDSNISLCEVG 256
Query: 372 VPRSIAQNMTFPEIVTPFN 390
VP IA+ TFPE VT FN
Sbjct: 257 VPEQIARIHTFPEHVTAFN 275
>gi|123979348|gb|ABM81499.1| RNA polymerase II largest subunit [Erioderma verruculosum]
Length = 995
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 173/355 (48%), Gaps = 112/355 (31%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+P D L+ + RR A ++ LCK K ICE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESNPAFTDA-LRYRDPKRRFDA-VWRLCKPKMICETA- 57
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
H ++DS +K
Sbjct: 58 -------------------------------------------SHADDDSMDK------- 67
Query: 214 GVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLT--------- 259
L K HGGCG QP +RR GL L WK NE Q K P+T
Sbjct: 68 --LKEPKHDHGGCGNVQPEVRREGLRLNGTWKAQKGDEENEGQQPGKKPITPQMALNIFR 125
Query: 260 ------------------------------------------GKGVL-LDDLTHKLADII 276
G GV DDLT+KL DII
Sbjct: 126 HISTEEIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGVRGEDDLTYKLGDII 185
Query: 277 KCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLK 336
+ N + R E+ G+ HV+ E ++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLK
Sbjct: 186 RANGNVRRCETEGSPAHVVMEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLK 245
Query: 337 GKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
GKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 246 GKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 300
>gi|329132887|gb|AEB78334.1| RNA polymerase II largest subunit [Percolomonas cosmopolitus]
Length = 1028
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 138/332 (41%), Positives = 184/332 (55%), Gaps = 41/332 (12%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFGHI+LA+ VFH+ +VT KILRC+C+ CSKLLV D + + ++R+
Sbjct: 1 ECPGHFGHINLAQDVFHISYVTTVAKILRCICYKCSKLLVDIDSG---DGLNQAGDENRK 57
Query: 135 RQAFIYDLCKG-KNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP-NIRRSGLDL 192
R IY+ + KNI + + + + +N GC QP + + GL +
Sbjct: 58 R---IYERYQSLKNIVPKSKRFEKMVQLSREVHRCKN-----DGCTEEQPKSYKTDGLKI 109
Query: 193 TAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQP-NIRRSGLDLTAEWKHVNEDS 251
A ++ N +E P K L H ++P +IR + L+
Sbjct: 110 EAILRNNN---RENITPEAAKLKLERISDEHARDLGFEPEHIRPHWMILS---------- 156
Query: 252 QEKKIPLT-----------GKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
K+P+ G DDLT+KL+DI+K NN L E +G I+E
Sbjct: 157 ---KLPVVPPCVRPSIEHGTAGAGQDDLTYKLSDIVKTNNRLREKEKNGETDFNISETRD 213
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
+L +VA + DN P L +A+QKSG+ LK I +RLKGKEGR+R NLMGKRVDFSARTVIT
Sbjct: 214 LLMLYVAQMMDNTNPKLTQAIQKSGRVLKCISSRLKGKEGRLRNNLMGKRVDFSARTVIT 273
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PDPNL IDQVGVP SIA NMTFPE VT +NM+
Sbjct: 274 PDPNLEIDQVGVPISIASNMTFPERVTLYNME 305
>gi|119643649|gb|ABL85581.1| RNA polymerase II largest subunit [Platismatia glauca]
Length = 996
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 127/292 (43%), Positives = 169/292 (57%), Gaps = 31/292 (10%)
Query: 117 SHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHG 176
S+P D + + ++R ++ LCK K ICE M ++ D D + K HG
Sbjct: 37 SNPAFADAIRRR--DPKKRFDLVWRLCKPKMICE--TTMALDDDAPSDKT--KQPKLDHG 90
Query: 177 GCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-- 229
GCG QP +RR GL LT WK NE Q +K P+T + L R+
Sbjct: 91 GCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPEKKPITPQMAL--------NIFRHIS 142
Query: 230 QPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGKGVL-------LDDLTHKLADIIKCN 279
+I+R GL EW + V DDLT+KL DII+ N
Sbjct: 143 TEDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLTYKLGDIIRAN 202
Query: 280 NELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKE 339
+ R E+ G+ HV++E ++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKE
Sbjct: 203 GNVRRCETEGSPAHVVSEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKE 262
Query: 340 GRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
R+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 263 XRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 314
>gi|119643792|gb|ABL85588.1| RNA polymerase II largest subunit [Physconia muscigena]
Length = 391
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/271 (45%), Positives = 157/271 (57%), Gaps = 14/271 (5%)
Query: 133 RRRQAFIYDLCKGKNICE---GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSG 189
++R I+ + K K ICE DE D KD +DP+ ++ + HGGCG QP +RR G
Sbjct: 58 KKRFDAIWRVSKPKRICEMDAPSDEED--KDSIQDPSKIKQPRIAHGGCGNIQPEVRRDG 115
Query: 190 LDLTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGG----CGRYQPNIRRSGLDL 240
L L WK NE Q +K P+T L Q G R + +
Sbjct: 116 LKLVGTWKPQKGDDENEGQQAEKKPITPAMALAIFLQMSPEDIKIMGMSNDYARPEWMII 175
Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
T K+ DDLT+KL DII+ N + R E+ G H+I E
Sbjct: 176 TVLPVPPPPVRPSIKVDSGDGPTGEDDLTYKLGDIIRANGNVRRGETEGTPAHIIEEFET 235
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
+LQFHVAT ND G P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 236 LLQFHVATYMSNDTAGQPQALQKSGRPVKAIRARLKGKEGRVRGNLMGKRVDFSARTVIT 295
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 296 GDPNLSLDEVGVPRSIARTLTYPETVTPYNI 326
>gi|119643674|gb|ABL85582.1| RNA polymerase II largest subunit [Punctelia hypoleucites]
Length = 1004
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 129/302 (42%), Positives = 172/302 (56%), Gaps = 35/302 (11%)
Query: 107 FYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPN 166
++ KL S+P D V + ++R ++ LCK K ICE M ++ + D
Sbjct: 38 YWWMKL----SNPAFADAVRRR--DPKKRFDMVWRLCKPKMICE--TTMALDDEAPSDKT 89
Query: 167 SLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQ 221
+ K HGGCG QP +RR GL LT WK NE Q +K P+T + L
Sbjct: 90 --KEPKHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPEKKPITPQMAL----- 142
Query: 222 GHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGKGVL-------LDDLT 269
R+ +I+R GL EW + V DDLT
Sbjct: 143 ---NIFRHISTEDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLT 199
Query: 270 HKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLK 329
+KL DII+ N + R E+ G+ HV+ E ++LQFHVA DND+ G P+A+QKSG+P+K
Sbjct: 200 YKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVAAYMDNDIAGQPQALQKSGRPVK 259
Query: 330 AIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPF 389
+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+
Sbjct: 260 SIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPY 319
Query: 390 NM 391
N+
Sbjct: 320 NI 321
>gi|322511128|gb|ADX06441.1| putative DNA-dependent RNA polymerase II [Organic Lake
phycodnavirus 2]
Length = 1478
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 148/398 (37%), Positives = 196/398 (49%), Gaps = 70/398 (17%)
Query: 16 VQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTE 75
+QF ILSPDEI R SV E I +T G +PK+GGL DPR GV+D C T N +
Sbjct: 14 IQFSILSPDEIVRNSVAE--ITSKDTYNGMKPKIGGLFDPRMGVLDPGMICPTDGQNYIQ 71
Query: 76 CPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRR 135
CPG+FGHI LAKPVF++ + KIL+C+CF CSKLL+S +V VL R
Sbjct: 72 CPGYFGHIVLAKPVFYIQYFNVIQKILKCICFKCSKLLISK---EVYKYVLNYSHNERWD 128
Query: 136 QAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGL-DLTA 194
Y +C G+ GCG QP I++ G L A
Sbjct: 129 N--FYQICNNLKPSRCGE-------------------HTQNGCGCLQPKIKKEGYCTLHA 167
Query: 195 EWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGR--YQPNIRRSGLDLTAEWK------ 245
EW N+D + I T + V + KK + P R EW
Sbjct: 168 EW--TNDDKEVITIKYTPELVTKIFKKITDEDIDFMGFSPKWSR------PEWMICQIFA 219
Query: 246 --------HVNEDSQEKK-----IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAAT 292
V +DSQ++ + + L K+ D + NN++I + +S
Sbjct: 220 VPPPSVRPSVKQDSQQRSEDDITHIIINIIKFNNSLREKINDP-ESNNKIIEDWTS---- 274
Query: 293 HVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 352
+LQ+++ATL DN++PG Q+SG+ LK+I R KGK GR+RGNLMGKRVD
Sbjct: 275 --------LLQYYIATLVDNNIPGTSPVTQRSGRALKSITERHKGKTGRVRGNLMGKRVD 326
Query: 353 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN 390
FSAR+VITPDP L I ++GVP IA N+T P V N
Sbjct: 327 FSARSVITPDPELSIAELGVPLKIAMNITKPIYVNDEN 364
>gi|347728922|gb|AEP20111.1| RNA polymerase II largest subunit [Lecidea sp. 1 Motiejunaite 7695]
Length = 338
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 131/298 (43%), Positives = 173/298 (58%), Gaps = 27/298 (9%)
Query: 109 CSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSL 168
C K+LV S+P D + +RR ++ LCK K ICE MD + ++
Sbjct: 3 CGKILVDESNPAFADALHLR--DPKRRFDLVWRLCKPKLICETSVTMDDDAPLVKE---- 56
Query: 169 QNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGH 223
+ K HGGCG QP IRR GL LT WK NE Q +K P+T + +Q
Sbjct: 57 KEPKHDHGGCGNVQPEIRREGLRLTGTWKPQKGDEENEGQQPEKRPITPQMAYNIFRQIS 116
Query: 224 GGCGRYQPNIRRSGLDLTA---EWKHVN-----EDSQEKKIPLTGKGVLL--DDLTHKLA 273
+I+R GL EW + + + G L DDLT+KL
Sbjct: 117 TD------DIQRMGLSTDYARPEWMIITCLPVPPPPVRPSVAVDGANGLRGEDDLTYKLG 170
Query: 274 DIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKA 333
DII+ N + R G+ HV+ E ++LQFHVAT DN++ G P+A+QKSG+P+K+I+A
Sbjct: 171 DIIRANQNVERCALEGSPAHVVNEFEQLLQFHVATYMDNNIAGQPQALQKSGRPVKSIRA 230
Query: 334 RLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 231 RLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNI 288
>gi|149794933|gb|ABR31762.1| RNA polymerase II largest subunit [Polyblastia melaspora]
Length = 1003
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 130/318 (40%), Positives = 177/318 (55%), Gaps = 16/318 (5%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S ++R T ++R I+ +
Sbjct: 2 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSE-ELR--YAHTVRNGKKRFELIWRM 58
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNED 202
+ +N+C+ D + +D ++ K HGGCG QP IR+SGL+L A++K D
Sbjct: 59 SQKQNVCQADSPEDEDDPMGKD----KSGKIRHGGCGNAQPVIRKSGLELWAQYKPRKGD 114
Query: 203 SQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQEKKI 256
+E+ +P + Q LD EW + I
Sbjct: 115 EEEEAVPEKSQIWPAQALQIFQHLTDETLETLGMNLDFARPEWMILQSLPVPPPPVRPSI 174
Query: 257 PLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDND 313
+ G G DDLT KL DII+ N +LIR + GA H+ E +LQ+HVAT DND
Sbjct: 175 SVDGSGQGSRGEDDLTFKLGDIIRANQDLIRINAEGAPDHIAKELQALLQYHVATYMDND 234
Query: 314 MPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVP 373
+ L +A KSG+P+K+I+AR KGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVP
Sbjct: 235 IANLDKAQHKSGRPIKSIRARSKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVP 294
Query: 374 RSIAQNMTFPEIVTPFNM 391
RSIA+ +T+PE VT FN+
Sbjct: 295 RSIARTLTYPETVTRFNI 312
>gi|291170450|gb|ADD82434.1| RNA polymerase II largest subunit [Capnodiales sp. S2]
Length = 361
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 177/311 (56%), Gaps = 17/311 (5%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K KIL CVC C KLL +P+ + +L +RR ++ LCK K CE +
Sbjct: 1 FLNKIKKILECVCHNCGKLLEDDRNPQFQRALLLR--DPKRRFDLVHRLCKPKKFCEADE 58
Query: 154 EMDINKDGAE-DPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTG 212
D + G DP + K++GH GCG QP IR+ L L WK+ D+ E +
Sbjct: 59 PNDDDNQGFNNDPKA--KKQKGHSGCGNSQPEIRKEQLRLWGTWKYTKADADEMEDKNVN 116
Query: 213 KGVLLNKKQGHGGCGRY-QPNIRRSGLDLTA---EWK-----HVNEDSQEKKIPLTGKGV 263
+ L+ + ++ R GL++ EW V + I + G
Sbjct: 117 EKKLITPQDALNVFRNITDDDLTRMGLNIDWSRPEWMVLTVLPVPPPAVRPSISVDGTSQ 176
Query: 264 LL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRA 320
+ DDLT KL+DII+ N+ + R E G+ HV+ E +LQ+HVAT DND+ +A
Sbjct: 177 GMRSEDDLTFKLSDIIRANSNVRRCEQEGSPQHVLDEFFSLLQYHVATYMDNDIGWCRQA 236
Query: 321 MQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNM 380
QK+ +P+KAI+ARLK KEGR+RGNLMGKRVDFSARTVI+ DPNL +DQVGVPRSIA+ +
Sbjct: 237 XQKTDRPVKAIRARLKSKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPRSIARVL 296
Query: 381 TFPEIVTPFNM 391
TFPE VT +N+
Sbjct: 297 TFPETVTVYNI 307
>gi|119643912|gb|ABL85594.1| RNA polymerase II largest subunit [Protopannaria pezizoides]
Length = 386
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 127/284 (44%), Positives = 167/284 (58%), Gaps = 30/284 (10%)
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPN 184
L+++ RR A ++ LCK K ICE + D P + K HGGCG QP
Sbjct: 51 ALRSRDPKRRFDA-VWRLCKPKMICE----TTVAPDEDAPPEKAKEPKHDHGGCGNIQPE 105
Query: 185 IRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD 239
IRR GL L WK NE Q +K P+T + L ++ I R GL
Sbjct: 106 IRREGLRLNGTWKPQKGDEENEGQQPEKKPITPQMALNIFRRISSD------EITRLGLS 159
Query: 240 ---LTAEWKHVNEDSQEK-----KIPLTG----KGVLLDDLTHKLADIIKCNNELIRNES 287
EW + I + G +G DDLT+KL DII+ N + R E+
Sbjct: 160 NDYARPEWMIITVLPVPPPPVRPSIAMDGGTGPRGE--DDLTYKLGDIIRANGNVRRCET 217
Query: 288 SGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLM 347
G+ HV++E ++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLM
Sbjct: 218 EGSPAHVVSEFEQLLQFHVATYMDNDIAGSPQALQKSGRPVKSIRARLKGKEGRLRGNLM 277
Query: 348 GKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
GKRVDFSARTVIT DPNL +D+VGVPRS+A+ +T+PE VTP+N+
Sbjct: 278 GKRVDFSARTVITGDPNLSLDEVGVPRSVARTLTYPETVTPYNI 321
>gi|119643502|gb|ABL85573.1| RNA polymerase II largest subunit [Lecidea fuscoatra]
Length = 1016
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 133/303 (43%), Positives = 176/303 (58%), Gaps = 36/303 (11%)
Query: 107 FYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICE--GGDEMDINKDGAED 164
F+ +KL S P+ RD L+ + +R A I+ LCK K CE G E D D ++
Sbjct: 38 FWXTKL----SDPRFRDA-LRFRDPKKRFDA-IWRLCKPKKKCETTAGQEDD-GLDKTKE 90
Query: 165 PNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLNK 219
P K HGGCG P +RR GL L WK NE Q +K P+T + L
Sbjct: 91 P------KHDHGGCGNTHPEVRREGLKLIGTWKAQKGEEENEGQQPEKKPITPQMALNVF 144
Query: 220 KQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVLL--DDLT 269
+ G +I+ GL EW + I + G + DDLT
Sbjct: 145 RHISTG------DIKTMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGMRGEDDLT 198
Query: 270 HKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLK 329
+KL DII+ N + R E+ G+ H++ E +LQFHVAT DND+ G P+A+QKSG+P+K
Sbjct: 199 YKLGDIIRANGNVQRCETEGSPAHIVTEFEHLLQFHVATYMDNDIAGQPQALQKSGRPVK 258
Query: 330 AIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPF 389
+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+
Sbjct: 259 SIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPY 318
Query: 390 NMD 392
N++
Sbjct: 319 NIE 321
>gi|119643817|gb|ABL85589.1| RNA polymerase II largest subunit [Rinodina tephraspis]
Length = 391
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 172/318 (54%), Gaps = 13/318 (4%)
Query: 85 LAKPVFHVGFVTKTIKILR-CVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLC 143
L P F + K L+ V L S+P +D + + R Q I+ LC
Sbjct: 11 LRFPSFMLASSLKXRSFLKPFVTIVARSKLTKSSNPTFKDALRVRDPKKRFDQ--IWRLC 68
Query: 144 KGKNICEGGDEMDIN-KDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK----- 197
K K +CE D + K+ + P +N GHGGCG QP +RR GL L A +K
Sbjct: 69 KPKLVCETDPVQDEDDKESMKGPLKSKNPAVGHGGCGNIQPEVRRDGLKLMATFKPQKGD 128
Query: 198 HVNEDSQEKKIPLTGKGVL----LNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQE 253
NE Q +K P+T + L + G R + +T
Sbjct: 129 DENEGQQPEKKPITPETALKIFRSMTTEAIKNMGLSNDYARPEWMIITVLPVPPPPVRPS 188
Query: 254 KKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDND 313
K+ DDLT+KL DII+ N + R E+ G H++ E +LQFHVAT ND
Sbjct: 189 IKVDSGDGPTGEDDLTYKLGDIIRANGNVRRGETEGTPAHIVEEFETLLQFHVATYMSND 248
Query: 314 MPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVP 373
G P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVP
Sbjct: 249 TAGQPQALQKSGRPVKAIRARLKGKEGRVRGNLMGKRVDFSARTVITGDPNLSLDEVGVP 308
Query: 374 RSIAQNMTFPEIVTPFNM 391
RSIA+ +T+PE VTP+N+
Sbjct: 309 RSIARTLTYPETVTPYNI 326
>gi|111278793|gb|ABH09094.1| RNA polymerase II largest subunit [Capronia pilosella]
Length = 1001
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 132/323 (40%), Positives = 176/323 (54%), Gaps = 24/323 (7%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+TK KIL VC C K+ + L + + RR A ++ L
Sbjct: 2 IKLATPVYHYGFMTKVKKILETVCHNCGKIKALEVSSEELKHALSLRDRKRRFDA-VWRL 60
Query: 143 CKGKNICEGGDEMDINKD--GAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVN 200
K + +CE D ++ G P HGGCG QP+IRR+GL L A WK
Sbjct: 61 SKPRAVCEADPPDDPDQPMKGPAPPK--------HGGCGNAQPDIRRTGLQLWATWKPRK 112
Query: 201 EDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVNE-----DSQ 252
+ E P K + + + + GL L EW ++
Sbjct: 113 GEDDEDTTP--DKKRIFPQDALNTFRTLTDETLEMMGLSLDYARPEWMILSALPVPPPPV 170
Query: 253 EKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G G DDLT KL DII+ N ++R E G H+ + +LQ+H+AT
Sbjct: 171 RPSISVDGSGQGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATY 230
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DN++ GL +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+
Sbjct: 231 MDNEIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 290
Query: 370 VGVPRSIAQNMTFPEIVTPFNMD 392
VGVPRSIA+ +TFPE VT FN++
Sbjct: 291 VGVPRSIARTLTFPETVTRFNVE 313
>gi|226876263|gb|ACO89452.1| RNA polymerase II largest subunit, partial [Leucothecium emdenii]
Length = 992
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 130/324 (40%), Positives = 176/324 (54%), Gaps = 44/324 (13%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+TK K+L VC C K+ + S PK + L + RR A ++ L K ICE
Sbjct: 1 GFLTKIKKLLETVCHNCGKIKANTSDPKYLNA-LGFRDPKRRFDA-VWRLSKDVLICEA- 57
Query: 153 DEMDINKDGAEDPNSLQNKKQ---GHGGCGRYQPNIRRSGLDLTAEWK-----------H 198
D E+ +S + + GHGGCG QP +R+ G+ L WK
Sbjct: 58 -------DPTEEDDSFGKESKPVKGHGGCGNTQPQVRKEGITLMGTWKPNKMRDMMDDID 110
Query: 199 VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEW----KHVNEDS 251
+ + +++ P + N + ++R GL EW
Sbjct: 111 IQQPEKKQITPQMALNIFRNISED---------DVRLMGLSNDYARPEWMVITVLPVPPP 161
Query: 252 QEKKIPLTGKGVL----LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVA 307
+ L G DDLT+KLA+II+ N + R E G+ HV+ E +LQ+HVA
Sbjct: 162 PVRPSVLIGGSSTGQRGEDDLTYKLAEIIRANQNVTRCEQEGSPEHVVREFESLLQYHVA 221
Query: 308 TLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRI 367
T DND+ G+P+AMQKS +P+KAI+ RLKGKEGR+R NLMGKRVDFSARTVIT DPNL +
Sbjct: 222 TYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSL 281
Query: 368 DQVGVPRSIAQNMTFPEIVTPFNM 391
D+VGVPRSIAQ +T+PE+VTPFN+
Sbjct: 282 DEVGVPRSIAQTLTYPEVVTPFNI 305
>gi|119643869|gb|ABL85591.1| RNA polymerase II largest subunit [Degelia plumbea]
Length = 1002
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 126/277 (45%), Positives = 163/277 (58%), Gaps = 32/277 (11%)
Query: 133 RRRQAFIYDLCKGKNICEGGDEM-DINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLD 191
+RR I+ LCK K CE D N D + +P K HGGCG QP +RR GL
Sbjct: 58 KRRFDAIWRLCKPKMTCETASAAEDDNIDKSREP------KHDHGGCGNIQPEVRREGLR 111
Query: 192 LTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LT 241
L WK NE Q +K P+T + L R+ I++ GL
Sbjct: 112 LNGTWKAQKGDEENEGQQPEKKPITPQMAL--------NIFRHISTEEIKKMGLSNDYAR 163
Query: 242 AEWKHVNEDSQEK-----KIPLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHV 294
EW + I + G + DDLT+KL DII+ N + R E+ G+ HV
Sbjct: 164 PEWMIITVLPVPPPPVRPSISVDGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHV 223
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
+ E ++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFS
Sbjct: 224 VMEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFS 283
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
ARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 284 ARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 320
>gi|120561168|gb|ABM26979.1| RNA polymerase II largest subunit [Nosema empoascae]
Length = 764
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 176/313 (56%), Gaps = 50/313 (15%)
Query: 89 VFHVGFVTKTIKILRCVCFYC--SKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGK 146
V +G+++K KIL C+CFYC K+ S P + ++ +CK K
Sbjct: 1 VMLIGYISKIKKILECICFYCSKIKISKKNSKPGLNA---------------LWTVCKTK 45
Query: 147 NICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEK 206
+CEG + ++GH GCG QP I++ GL+L A K ED+ E
Sbjct: 46 TVCEG-----------------EVMEEGHTGCGNKQPLIKKEGLNLVAFMK--GEDNSEG 86
Query: 207 KIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EW-----KHVNEDSQEKKIPL 258
K+ LTG+ V K+ +I G D EW V + I +
Sbjct: 87 KVILTGERVYSIFKKIS------DEDIEYLGFDSQYSRPEWLILTVLLVPPPAVRPSIVM 140
Query: 259 TGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
G DDLTHKLADIIK N L + E GA H+I + ++LQFH+ATL DND+ G P
Sbjct: 141 EGMLRAEDDLTHKLADIIKSNTYLKKYELEGAPGHIIRDYEQLLQFHIATLIDNDLSGQP 200
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
+A+QKSG+PLK+I ARLKGKEGR+RGNLMGKRVDFSAR+VIT D N+ +++VGVP +A+
Sbjct: 201 QALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPIEVAK 260
Query: 379 NMTFPEIVTPFNM 391
TFPE +TPFN+
Sbjct: 261 IHTFPEKITPFNV 273
>gi|119643486|gb|ABL85572.1| RNA polymerase II largest subunit [Candelariella reflexa]
Length = 989
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 130/309 (42%), Positives = 174/309 (56%), Gaps = 34/309 (11%)
Query: 103 RCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD---EMDINK 159
+C L+ S+P+ + L+ + RR +AF + CK K CE + E
Sbjct: 13 QCATIVGRYWLMKLSNPQFTEA-LRFRDPKRRFEAF-WRSCKPKMFCEPDEDSKEESFGG 70
Query: 160 DGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK----HVNEDSQEKKIPLTGKGV 215
D ++P K + HGGCG QP +RR GL L WK +E +K P+T +
Sbjct: 71 DNLKEPK----KNRTHGGCGNVQPEVRREGLKLMGTWKVPKGEEDEGQPNEKKPITPQAA 126
Query: 216 LLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTGKGVLL 265
L R+ IR+ GL EW + I + G G +
Sbjct: 127 L--------NVFRHISTEEIRKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGSGQGM 178
Query: 266 ---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQ 322
DDLT+KL DII+ N + R E G+ HV+ E +LQFHVAT DND+ G P+A+Q
Sbjct: 179 RGEDDLTYKLGDIIRANGNVRRCEQEGSPAHVVQEFESLLQFHVATYMDNDIAGQPQALQ 238
Query: 323 KSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTF 382
KSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+
Sbjct: 239 KSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTY 298
Query: 383 PEIVTPFNM 391
PE VTP+N+
Sbjct: 299 PETVTPYNI 307
>gi|291419536|gb|ADE05281.1| RNA polymerase II largest subunit [Lecanactis abietina]
Length = 346
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 131/325 (40%), Positives = 182/325 (56%), Gaps = 23/325 (7%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LA PV+H GF+TK KIL CVC C K+ S + + + + +RR ++
Sbjct: 1 HIELAVPVYHYGFMTKVKKILECVCHNCGKIKALDSEEYRQALATRDR---KRRFELMWK 57
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNK--KQGHGGCGRYQPNIRRSGLDLTAEWKHV 199
L K + CE + EDP + + K HGGCG QP IR+ L L A+WK
Sbjct: 58 LSKDRAECEADP-----PEEDEDPIAREKGLLKARHGGCGNRQPEIRKKALSLVAKWKAR 112
Query: 200 NEDSQEKKI------PLTGK---GVLLN-KKQGHGGCGRYQPNIRRSGLDLTAEWKHVNE 249
D +E P+T + + N + G N R + LT
Sbjct: 113 KNDDEEGGSEEAXEKPITPQQCLNIFRNISDEDLEKLGLSLDNARPEWMILTVLPVPPPP 172
Query: 250 DSQEKKIPLTGKGVLL-DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVAT 308
+ T +G DD+T KL+DI++ N + R + G+ HV+ E++++LQ+HVAT
Sbjct: 173 VXPSISMDGTAQGSRSEDDMTFKLSDILRANQNVRRVQQEGSPEHVLNEHVQLLQWHVAT 232
Query: 309 LTDNDMPGLP--RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLR 366
DND+ GL +A +SG+PLK+I+ARLKGK+GR+R NLMGKRVDFSARTVIT DPNL
Sbjct: 233 YMDNDIAGLSDMKAQHESGRPLKSIRARLKGKDGRLRQNLMGKRVDFSARTVITGDPNLS 292
Query: 367 IDQVGVPRSIAQNMTFPEIVTPFNM 391
+D+VGVPRSIA+ +TF E T FN+
Sbjct: 293 LDEVGVPRSIARTLTFTETATRFNI 317
>gi|111154414|gb|ABH07421.1| RNA polymerase II largest subunit [Pyrgillus javanicus]
Length = 971
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 123/308 (39%), Positives = 182/308 (59%), Gaps = 14/308 (4%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L C +C K+L+ ++P + LKT+ + RR I+ LCK K CE
Sbjct: 1 FIGKIKKLLEICCHHCGKILMDETNPAFIEA-LKTRDRKRRFDK-IWTLCKTKKKCERDP 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
+ D N D E+P+ GGCG P+IR+ GL L WK+ + ++++ + K
Sbjct: 59 QDDSNAD--ENPDHPLKPSSTRGGCGNVAPDIRKDGLKLLGTWKYDKSEEEDEERRIEKK 116
Query: 214 GVLLNK---------KQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL 264
+ ++ + G + + + LT + TG+G+
Sbjct: 117 YITPHQALEAFNHISSEDLEKIGLGSDYAKPTWMILTVLPVPPPPVRPSISVDGTGQGMR 176
Query: 265 -LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQK 323
DDLT+KL+DII+ N + + + G+ H++AE +LQ+HVAT DND+ G P+AMQK
Sbjct: 177 GEDDLTYKLSDIIRANANVKKCKGEGSPGHIVAEFETLLQYHVATYMDNDIAGQPQAMQK 236
Query: 324 SGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFP 383
SG+P+K+I++RLKGKEGR+RGNLMGKRVDFSARTVIT DP L +DQVGVPR+I + +T+P
Sbjct: 237 SGRPIKSIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPYLDLDQVGVPRTICKTLTYP 296
Query: 384 EIVTPFNM 391
E VTP+N+
Sbjct: 297 ETVTPYNI 304
>gi|119643505|gb|ABL85574.1| RNA polymerase II largest subunit [Cetraria islandica]
Length = 1003
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 123/276 (44%), Positives = 163/276 (59%), Gaps = 29/276 (10%)
Query: 133 RRRQAFIYDLCKGKNICEGGDEMDIN--KDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGL 190
++R ++ LC+ K ICE +D + D A++P + HGGCG QP +RR GL
Sbjct: 58 KKRFDSVWRLCRPKMICETTMALDDDAPSDKAKEP------RHDHGGCGNIQPEVRREGL 111
Query: 191 DLTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTA 242
LT WK NE Q +K P+T + L + +I+R GL
Sbjct: 112 KLTGTWKAQKGDEENEGQQPEKKPITPQMALNIFRHISAD------DIKRMGLSNDYARP 165
Query: 243 EWKHVNEDSQEKKIPLTGKGVL-------LDDLTHKLADIIKCNNELIRNESSGAATHVI 295
EW + V DDLT+KL DII+ N R E+ G+ HV+
Sbjct: 166 EWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLTYKLGDIIRANGNARRCETEGSPAHVV 225
Query: 296 AENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 355
E ++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSA
Sbjct: 226 NEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSA 285
Query: 356 RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
RTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 286 RTVITGDPNLSLDEVGVPRSIARTLTYPEXVTPYNI 321
>gi|119643942|gb|ABL85596.1| RNA polymerase II largest subunit [uncultured Ascomycota]
Length = 390
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 185/322 (57%), Gaps = 32/322 (9%)
Query: 90 FHVGFVTKTIKILRCVCFYCSK-LLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNI 148
F +G ++ LR ++ L+ S+P D L+ + RR A ++ LCK K +
Sbjct: 16 FMLGSXQRSRSCLRLSATIAARSWLMKLSNPASADA-LRYRDPKRRFDA-VWRLCKPKMV 73
Query: 149 CEGGDEMDINKDGAEDPNSLQNKK--QGHGGCGRYQPNIRRSGLDLTAEWK-----HVNE 201
CE + + +E+P++ + K+ HGGCG QP IRR L L W+ NE
Sbjct: 74 CE--NAATTSNAESENPDTSKTKEPVHDHGGCGNIQPEIRREELRLNGTWEAQKGDEENE 131
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHVNEDSQEK-- 254
Q +K P+T + L R+ I+R GL EW +
Sbjct: 132 GQQPEKKPITPQMAL--------NIFRHISTEEIKRMGLSNDYARPEWMIITVLPVPPPP 183
Query: 255 ---KIPLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
I + G + DDLT+KL DII+ N + R E+ G+ HV+ E ++LQFHVAT
Sbjct: 184 VRPSIAVDGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATY 243
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+
Sbjct: 244 MDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDE 303
Query: 370 VGVPRSIAQNMTFPEIVTPFNM 391
VGVPRSIA+ +T+PE VTP+N+
Sbjct: 304 VGVPRSIAKTLTYPETVTPYNI 325
>gi|157741614|gb|ABV69512.1| RNA polymerase II largest subunit, partial [Verrucaria tristis]
Length = 988
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 130/313 (41%), Positives = 175/313 (55%), Gaps = 26/313 (8%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K KIL VC C K+ S + ++ + ++R I+ L + +N+C+
Sbjct: 1 FLGKVKKILETVCHNCGKIKAVDSEEMRYALSVRDR---KKRFELIWRLSQKQNVCQAD- 56
Query: 154 EMDINKDGAEDPNSLQNKKQG---HGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPL 210
D EDP L +K G HGGCG QP IR++GL+L A++K D +E+ +P
Sbjct: 57 ----AHDDEEDP--LAKEKAGKTRHGGCGNAQPAIRKTGLELWAQYKPRKGDDEEETVP- 109
Query: 211 TGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQEKKIPLTGKG 262
K + + + GL L EW + I + G G
Sbjct: 110 -EKSQIWPAQALQVFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPVRPSISVDGSG 168
Query: 263 VLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPR 319
DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DND+ L +
Sbjct: 169 QGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDNDIANLDK 228
Query: 320 AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 379
A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 229 AQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 288
Query: 380 MTFPEIVTPFNMD 392
+T+PE VTPFN+D
Sbjct: 289 LTYPETVTPFNLD 301
>gi|157741584|gb|ABV69497.1| RNA polymerase II largest subunit, partial [Verrucaria hydrela]
Length = 999
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 132/322 (40%), Positives = 180/322 (55%), Gaps = 26/322 (8%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K KIL VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKILETVCHNCGKIKAVDSEELRFALTVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQG---HGGCGRYQPNIRRSGLDLTAEWKHV 199
+ +NIC+ ++ ++L +K G HGGCG QP IR++GL+L A++K
Sbjct: 58 SQKQNICQ-------ADAADDENDALGKEKAGRIRHGGCGNAQPAIRKTGLELWAQYKPR 110
Query: 200 NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DS 251
D +E+ +P K + + + GL L EW +
Sbjct: 111 KGDDEEETVP--EKSQIWPAQALQVFQHLTDDTLETLGLSLDFARPEWMILQSLPVPPPP 168
Query: 252 QEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVAT 308
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 169 VRPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVAT 228
Query: 309 LTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 368
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D
Sbjct: 229 YMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLD 288
Query: 369 QVGVPRSIAQNMTFPEIVTPFN 390
+VGVPRSIA+ +T+PE VT FN
Sbjct: 289 EVGVPRSIARTLTYPETVTRFN 310
>gi|171186406|ref|YP_001795325.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum neutrophilum
V24Sta]
gi|170935618|gb|ACB40879.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum neutrophilum
V24Sta]
Length = 884
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 146/404 (36%), Positives = 207/404 (51%), Gaps = 65/404 (16%)
Query: 9 PLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQ 67
P + +K ++FGILSP+ IR+ SV E + E EGG P GG+ D R GV + +RC+
Sbjct: 11 PRKAIKSIKFGILSPEMIRKYSVME--VTTSEVYDEGGLPVRGGIADRRLGVAEPGARCE 68
Query: 68 TCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH-PKVRDVVL 126
TC CPGHFGH++L KPV HV + +LR C C ++++ + R+ +
Sbjct: 69 TCGQTHDVCPGHFGHVELVKPVIHVEYARIIYDVLRTTCPNCGRIMLKDEEIQRYRERLT 128
Query: 127 KTKGQSRRRQAFIYDLCKGKNICEGGDEMDI-------NKDGAEDPNSLQNKKQGHGGCG 179
K K + R +++ + K + M NK E P + + G
Sbjct: 129 KLKSKWRLLAMNLHEKIRKK----ASERMTCPHCGYKRNKVRFERPYYFYEETE-EGALV 183
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD 239
+ P + R L K NED + L G LN P++ R
Sbjct: 184 KLDPEVLRDRLA-----KVPNED-----LELLG----LN------------PSVARP--- 214
Query: 240 LTAEWK----------HVNEDSQEKKIPLTGKGVLLDD-LTHKLADIIKCNNELIRNESS 288
EW HV Q + G+ +D LTHKL DII+ N +L +
Sbjct: 215 ---EWAILKVLPVPPPHVRPSIQLE------TGIRSEDDLTHKLVDIIRMNEKLKIAIET 265
Query: 289 GAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMG 348
GA T+V+ +LQ+HVAT DN++PG+P A + G+PLK I RLKGKEGR RG+L G
Sbjct: 266 GAPTNVVDNLWDLLQYHVATYFDNELPGIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSG 325
Query: 349 KRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
KRV+FSARTVI+PDP++ I++VGVP IA+ +T PE VT +N+D
Sbjct: 326 KRVNFSARTVISPDPHISINEVGVPYDIAKILTVPERVTEWNVD 369
>gi|119514080|gb|ABL75813.1| RNA polymerase II largest subunit [Umbilicaria muehlenbergii]
Length = 353
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 136/356 (38%), Positives = 175/356 (49%), Gaps = 113/356 (31%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV SH D L+ + RR A I+ LCK K +CE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESHAAFADA-LRFRDPKRRFDA-IWRLCKPKMVCETM- 57
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D +SL++ K+
Sbjct: 58 -------AVPDEDSLKDSKE---------------------------------------- 70
Query: 214 GVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPL---------- 258
K HGGCG QP +RR GL LT WK NE Q +K P+
Sbjct: 71 -----PKHDHGGCGNIQPEVRREGLKLTGTWKAQKGDEENEGQQPEKKPITPQMALNIFR 125
Query: 259 ------------------------------------------TGKGVL-LDDLTHKLADI 275
TG+G+ DDLT+KL DI
Sbjct: 126 HISTEEIRKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDI 185
Query: 276 IKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARL 335
I+ N + R E+ G+ HV++E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARL
Sbjct: 186 IRANGNVRRCETEGSPAHVVSEFESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARL 245
Query: 336 KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
KGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 246 KGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 301
>gi|119514082|gb|ABL75814.1| RNA polymerase II largest subunit [Umbilicaria rigida]
Length = 353
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 136/356 (38%), Positives = 176/356 (49%), Gaps = 113/356 (31%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+P D L+ + RR A I+ LCK K +CE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESNPAFADA-LRFRDPKRRFDA-IWRLCKPKMVCETM- 57
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D +SL++ K+
Sbjct: 58 -------AVPDEDSLKDSKE---------------------------------------- 70
Query: 214 GVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPL---------- 258
K HGGCG QP +RR GL LT WK NE Q +K P+
Sbjct: 71 -----PKHDHGGCGNIQPEVRREGLKLTGTWKAQKGDEENEGQQPEKKPITPQMALNIFR 125
Query: 259 ------------------------------------------TGKGVL-LDDLTHKLADI 275
TG+G+ DDLT+KL DI
Sbjct: 126 HISTEEIRKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDI 185
Query: 276 IKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARL 335
I+ N + R E+ G+ HV++E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARL
Sbjct: 186 IRANGNVRRCETEGSPAHVVSEFESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARL 245
Query: 336 KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
KGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 246 KGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNI 301
>gi|120561174|gb|ABM26982.1| RNA polymerase II largest subunit [Vairimorpha cheracis]
Length = 936
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 130/302 (43%), Positives = 172/302 (56%), Gaps = 48/302 (15%)
Query: 100 KILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINK 159
KIL C+CFYCS+L VS K + A I+ + K K +CEG D ++
Sbjct: 3 KILECICFYCSRLKVS-------------KKNLKPSLAMIWGVSKAKMVCEG-DLLE--- 45
Query: 160 DGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNK 219
+G+ GCG QP I++ GL+L A K ED+ E K+ L G+ V
Sbjct: 46 -------------EGYTGCGNKQPVIKKEGLNLVAFMK--GEDNNEGKVILNGEKV---- 86
Query: 220 KQGHGGCGRYQ-PNIRRSGLDLTA---EWK-----HVNEDSQEKKIPLTGKGVLLDDLTH 270
H + +I G DL EW V + I + G DDLTH
Sbjct: 87 ---HSIFKKISDEDITALGFDLEFSRPEWLVLTVLLVPPPAVRPSIVMEGMLRAEDDLTH 143
Query: 271 KLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKA 330
KL+DIIK N L + E GA H+I + ++LQFH+ATL DND+ G P+A+QKSG+PLK+
Sbjct: 144 KLSDIIKSNTYLKKYELEGAPGHIIRDYEQLLQFHIATLIDNDISGQPQALQKSGRPLKS 203
Query: 331 IKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN 390
I ARLKGKEGR+RGNLMGKRVDFSAR+VIT D N+ +++VGVP +A+ TFPE +TPFN
Sbjct: 204 ISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPVEVAKIHTFPEKITPFN 263
Query: 391 MD 392
+
Sbjct: 264 AE 265
>gi|394998733|gb|AFN44285.1| RNA polymerase II largest subunit, partial [Brigantiaea fuscolutea]
Length = 332
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 120/271 (44%), Positives = 162/271 (59%), Gaps = 20/271 (7%)
Query: 133 RRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDL 192
++R ++ LCK K +CE + E P + + HGGCG QP +RR L L
Sbjct: 15 KKRFDAVWRLCKPKMVCETSMPAE-----DESPEKSKEPRHDHGGCGNIQPEVRREALKL 69
Query: 193 TAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LTAEWKHV 247
T WK D + + P K + Q R+ +IR+ GL EW +
Sbjct: 70 TGTWKAQKGDDENEGQPAEKKPIT---PQMTLNVFRHISLEDIRKMGLSNDYARPEWMII 126
Query: 248 NEDSQEK-----KIPLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
I + G + DDLT+KL DII+ N + R E+ GA H+++E +
Sbjct: 127 TVLPVPPPPVRPSISVDGANGMRGEDDLTYKLGDIIRANGNVRRCENDGAPAHIVSEFEQ 186
Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
+LQFHVAT DND+ GLP+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 187 LLQFHVATYMDNDVAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVIT 246
Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 247 GDPNLSLDEVGVPRSIARTLTYPETVTPYNI 277
>gi|408402779|ref|YP_006860762.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|300521498|gb|ADK25960.1| RNA polymerase A [Candidatus Nitrososphaera gargensis]
gi|408363375|gb|AFU57105.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 1273
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 136/387 (35%), Positives = 202/387 (52%), Gaps = 46/387 (11%)
Query: 16 VQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMT 74
++F + SP E+R+ SV E I PET E G P GGLMD R G ++ +C TC
Sbjct: 11 IKFSVWSPTEVRKFSVAE--ITAPETYDEDGMPVQGGLMDNRLGTLEPGQKCATCGNTSA 68
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
+CPGHFGHI+LA+PV H+ FV K+L C C+++ + P T +S R
Sbjct: 69 KCPGHFGHIELAEPVLHIAFVDDIHKLLLISCRSCNRIKLEPEE--------LTHYKSIR 120
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
Y + +NI DE+ I + K + CG+ Q ++ + +
Sbjct: 121 DTKAAYAVITLENI---KDEI-IER---------AKKVKVCPHCGKEQYDLIFTKPTIFV 167
Query: 195 EWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEK 254
E E+ + +P+T + L + Y P R EW + Q
Sbjct: 168 EKTDAGEN---RLLPITIRERLSHIPDDDLTLLGYDPRTARP------EWFVL----QVL 214
Query: 255 KIP--------LTGKGVLLDD-LTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFH 305
+P + G+ +D LTHKL DII+ N L ++ +G ++ + + +LQ+H
Sbjct: 215 PVPPVTVRPSIILETGIRSEDDLTHKLVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYH 274
Query: 306 VATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNL 365
V T DN++ G+P+A +SG+PLK + RLKGKEGR RG+L GKRVDFS+RTVI+PDPNL
Sbjct: 275 VTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNL 334
Query: 366 RIDQVGVPRSIAQNMTFPEIVTPFNMD 392
I VGVP +A+ +T PE V+ +N++
Sbjct: 335 TIADVGVPTDVAKKLTIPETVSQWNVE 361
>gi|226876267|gb|ACO89454.1| RNA polymerase II largest subunit, partial [Shanorella spirotricha]
Length = 847
Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 134/322 (41%), Positives = 183/322 (56%), Gaps = 39/322 (12%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+TK K+L VC C K+ + S K D L+ + RR A ++ L K ICE
Sbjct: 1 GFLTKIKKLLETVCHNCGKIKANSSDQKYMDA-LRFRDPKRRFDA-VWRLSKDILICEA- 57
Query: 153 DEMDINKDGAEDPNSLQNKK----QGHGGCGRYQPNIRRSGLDLTAEWK--------HVN 200
D AED ++ + Q HGGCG QP +R+ G+ L WK +
Sbjct: 58 -------DPAEDDDAFSKESSKPVQSHGGCGNVQPQVRKEGITLMGTWKPNKMRDMMDAD 110
Query: 201 EDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGL--DLT-AEW-----KHVNEDSQ 252
+ Q +K +T + + LN + + ++R GL D + EW V
Sbjct: 111 DHQQPEKKQITPQ-MALNIFRNVS-----EEDVRLMGLSNDYSRPEWMIVTVLPVPPPPV 164
Query: 253 EKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
+ + G G DDLT+KLA+II+ N + R E G+ HV+ E +LQ+HVAT
Sbjct: 165 RPNVLVGGSGTGQRGEDDLTYKLAEIIRANQNVTRCEQEGSPEHVVREFESLLQYHVATY 224
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND+ G+P+AMQKS +P+KAI+ RLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+
Sbjct: 225 MDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 284
Query: 370 VGVPRSIAQNMTFPEIVTPFNM 391
VGVP SIAQ +T+PE+VTP+N+
Sbjct: 285 VGVPISIAQTLTYPEVVTPYNI 306
>gi|394998775|gb|AFN44306.1| RNA polymerase II largest subunit, partial [Teloschistes exilis]
Length = 355
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 132/314 (42%), Positives = 179/314 (57%), Gaps = 30/314 (9%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K+L VC C K+LV S+P + L+ + RR A I+ LCK K +CE
Sbjct: 1 FLRHIKKLLETVCHNCGKILVDESNPAFAEA-LRHRDPKRRFDA-IWRLCKPKLVCETTP 58
Query: 154 -EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKK 207
+ D D + +P + HGGCG QP IR+ L L WK +E Q +K
Sbjct: 59 PQTDDQLDRSGEP------RHDHGGCGNVQPEIRKEALALNGTWKAQKGDDEHEGQQAEK 112
Query: 208 IPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLT 259
P+T + L + +I++ GL EW + I +
Sbjct: 113 KPITPQMALSVFRN------ISTDDIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISMD 166
Query: 260 GKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGL 317
G L DDLT+KL DII+ N + R + G+ H+ E +LQFHVAT DN++ GL
Sbjct: 167 GANGLRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLTQEFENLLQFHVATYMDNNIAGL 226
Query: 318 PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 377
+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA
Sbjct: 227 GQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIA 286
Query: 378 QNMTFPEIVTPFNM 391
+ +T+PE VTP+N+
Sbjct: 287 KTLTYPETVTPYNI 300
>gi|226876213|gb|ACO89427.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN210]
Length = 957
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 172/309 (55%), Gaps = 18/309 (5%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+TK KIL VC C K+ S + ++ + +RR ++ L K +N+CE
Sbjct: 1 GFMTKVKKILEMVCHNCGKIKALDSEDLRHALSIRDR---KRRFDAVWRLSKPRNVCEAD 57
Query: 153 DEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK----HVNEDSQEKKI 208
D + P HGGCG QP+IRR+GL L A WK +ED+ +K
Sbjct: 58 PPEDADGPAKGAPTV------RHGGCGNAQPDIRRTGLQLWASWKAKKGEDDEDTTPEKK 111
Query: 209 PLTGKGVL----LNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL 264
+ L L + G R + L A + +G+G
Sbjct: 112 RIFPNDALNTFRLLTDETLEAMGLSLDYARPEWMILQALPVPPPPVRPSISVDGSGQGQH 171
Query: 265 L-DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQK 323
DDLT KL DII+ N ++R E G H+ + +LQ+H+AT DND+ GL +A K
Sbjct: 172 SEDDLTFKLGDIIRANQAVLRCEVDGTPDHIKVDLQDLLQYHIATYMDNDIAGLDKAQHK 231
Query: 324 SGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFP 383
SG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+P
Sbjct: 232 SGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYP 291
Query: 384 EIVTPFNMD 392
E+VTPFN+D
Sbjct: 292 EVVTPFNID 300
>gi|206601354|gb|ACI16396.1| RNA polymerase II largest subunit [Polyblastia sp. Tibell 23635]
Length = 356
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 130/308 (42%), Positives = 173/308 (56%), Gaps = 18/308 (5%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+ S +R V G ++R I+ L + +N+C+
Sbjct: 1 FLGKVKKLLETVCHNCGKIKAVDSE-DLRYAVSVRDG--KKRFDLIWRLSQKQNVCQADS 57
Query: 154 EMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTG 212
D +DPN+ + K HGGCG QP IR++GL+L A++K D +E+ +P
Sbjct: 58 PED-----EDDPNAKEKGGKIRHGGCGNAQPAIRKAGLELWAQYKPRKGDDEEETVPEKS 112
Query: 213 KGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQEKKIPLTGKGVLL- 265
+ Q I LD EW + I + G G
Sbjct: 113 QIWPAQALQVFQHLTDETLEILGMNLDFARPEWMILQSLPVPPPPVRPSISVDGSGQGQR 172
Query: 266 --DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQK 323
DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DND+ L +A K
Sbjct: 173 GEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATYMDNDIANLDKAQHK 232
Query: 324 SGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFP 383
SG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+N+T+P
Sbjct: 233 SGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARNLTYP 292
Query: 384 EIVTPFNM 391
E VTPFN+
Sbjct: 293 ETVTPFNI 300
>gi|226876229|gb|ACO89435.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN497]
Length = 990
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 129/313 (41%), Positives = 172/313 (54%), Gaps = 26/313 (8%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+TK KIL VC C K+ + + L+ + +RR ++ L K + ICE
Sbjct: 1 GFMTKVKKILETVCHNCGKIKALDTEEFRHAISLRDR---KRRFDAVWRLSKPRLICEA- 56
Query: 153 DEMDINKDGAEDPNSLQN--KKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPL 210
D E+P+ L + HGGCG QP IRR+GL L A WK D E P
Sbjct: 57 -------DPPEEPDQLVKGPPQPKHGGCGNAQPEIRRTGLQLWATWKPRKGDDDEDITP- 108
Query: 211 TGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVNE-----DSQEKKIPLTGKG 262
K + + + + GL L EW ++ I + G G
Sbjct: 109 -DKKRIFPQDALNTFRTLTDETLEMMGLSLDYARPEWMILSALPVPPPPVRPSISVDGSG 167
Query: 263 VLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPR 319
DDLT KL DII+ N ++R E G H+ + +LQ+H+AT DN++ GL +
Sbjct: 168 QGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKIDLCDLLQYHIATYMDNEIAGLEK 227
Query: 320 AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 379
A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 AQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 287
Query: 380 MTFPEIVTPFNMD 392
+T+PE VTPFN+D
Sbjct: 288 LTYPETVTPFNLD 300
>gi|119514078|gb|ABL75812.1| RNA polymerase II largest subunit [Umbilicaria arctica]
Length = 357
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 136/356 (38%), Positives = 174/356 (48%), Gaps = 113/356 (31%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S P D L+ + RR A I+ LCK K +CE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESFPAFADA-LRFRDPKRRFDA-IWRLCKPKMVCETM- 57
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D +SL+ K+
Sbjct: 58 -------AVPDEDSLKESKE---------------------------------------- 70
Query: 214 GVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPL---------- 258
K HGGCG QP +RR GL LT WK NE Q +K P+
Sbjct: 71 -----PKHDHGGCGNIQPEVRREGLKLTGTWKAQKGDEENEGQQPEKKPITPQMALNIFR 125
Query: 259 ------------------------------------------TGKGVL-LDDLTHKLADI 275
TG+G+ DDLT+KL DI
Sbjct: 126 HISTEEIRKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDI 185
Query: 276 IKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARL 335
I+ N + R E+ G+ HV++E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARL
Sbjct: 186 IRANGNVRRCETEGSPAHVVSEFESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARL 245
Query: 336 KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
KGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 246 KGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNI 301
>gi|157741496|gb|ABV69453.1| RNA polymerase II largest subunit, partial [Endocarpon
petrolepideum]
Length = 964
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 130/311 (41%), Positives = 173/311 (55%), Gaps = 22/311 (7%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+ K K+L VC C K+ S + ++ ++R I+ L + +NIC+
Sbjct: 2 GFLGKVKKLLETVCHNCGKIKAVDSEDLRYALTVRN---PKKRFELIWRLSQKQNICQAD 58
Query: 153 DEMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLT 211
D EDP + + K GHGGCG QP IRRSGL+L A++K D E+ +P
Sbjct: 59 SPED-----EEDPAAKERSGKVGHGGCGNAQPQIRRSGLELWAQYKPRKGDDDEETVP-- 111
Query: 212 GKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQEKKIPLTGKGV 263
K + + + GL+L EW + I + G G
Sbjct: 112 EKSQIWPAQALEVFQHLTDETLDTLGLNLDFARPEWMILQSLPVPPPPVRPSISVDGSGQ 171
Query: 264 LL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRA 320
DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DND+ L +A
Sbjct: 172 GSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDNDIANLDKA 231
Query: 321 MQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNM 380
KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +
Sbjct: 232 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 291
Query: 381 TFPEIVTPFNM 391
T+PE VT FN+
Sbjct: 292 TYPETVTRFNI 302
>gi|226876265|gb|ACO89453.1| RNA polymerase II largest subunit, partial [Onygena corvina]
Length = 361
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 134/320 (41%), Positives = 182/320 (56%), Gaps = 35/320 (10%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+TK K+L VC C K+ + S K D L+ + +R A I+ L K ICE
Sbjct: 1 GFLTKIKKLLETVCHNCGKIKANASDQKYMDA-LRFRDPKKRFDA-IWRLSKDSLICEAD 58
Query: 153 DEMDINKDGAEDPNSLQNKK--QGHGGCGRYQPNIRRSGLDLTAEWKHV--------NED 202
D +DP + ++ K +GHGGCG QP +R+ G+ L WK NE
Sbjct: 59 PPED------DDPFAKESSKPVKGHGGCGNVQPQVRKEGITLMGTWKPSKMRDMMDDNEI 112
Query: 203 SQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEKKIPL- 258
Q +K +T + + LN + + ++R GL EW +
Sbjct: 113 QQPEKKQITPQ-MALNIFRNIS-----EEDVRLMGLSNDYARPEWMVITVLPVPPPPVRP 166
Query: 259 ------TGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTD 311
+G G DDLT+KLA+II+ N + R E G+ HV+ E +LQ+HVAT D
Sbjct: 167 SVLVGGSGTGQRGEDDLTYKLAEIIRANQNVTRCEQEGSPEHVVREFESLLQYHVATYMD 226
Query: 312 NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
ND+ G+P+AMQKS +P+KAI+ RLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VG
Sbjct: 227 NDIAGIPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVG 286
Query: 372 VPRSIAQNMTFPEIVTPFNM 391
VP SIAQ +T+PE+VTP+N+
Sbjct: 287 VPISIAQTLTYPEVVTPYNI 306
>gi|226876231|gb|ACO89436.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN506]
Length = 990
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 129/313 (41%), Positives = 172/313 (54%), Gaps = 26/313 (8%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+TK KIL VC C K+ + + L+ + +RR ++ L K + ICE
Sbjct: 1 GFMTKVKKILETVCXNCGKIKALDTEEFRHAISLRDR---KRRFDAVWRLSKPRLICEA- 56
Query: 153 DEMDINKDGAEDPNSLQN--KKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPL 210
D E+P+ L + HGGCG QP IRR+GL L A WK D E P
Sbjct: 57 -------DPPEEPDQLVKGPPQPKHGGCGNAQPEIRRTGLQLWATWKPRKGDDDEDITP- 108
Query: 211 TGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVNE-----DSQEKKIPLTGKG 262
K + + + + GL L EW ++ I + G G
Sbjct: 109 -DKKRIFPQDALNTFRTLTDETLEMMGLSLDYARPEWMILSALPVPPPPVRPSISVDGSG 167
Query: 263 VLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPR 319
DDLT KL DII+ N ++R E G H+ + +LQ+H+AT DN++ GL +
Sbjct: 168 QGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKIDLCDLLQYHIATYMDNEIAGLEK 227
Query: 320 AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 379
A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 AQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 287
Query: 380 MTFPEIVTPFNMD 392
+T+PE VTPFN+D
Sbjct: 288 LTYPETVTPFNLD 300
>gi|119514076|gb|ABL75811.1| RNA polymerase II largest subunit [Umbilicaria aprina]
Length = 355
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 136/356 (38%), Positives = 174/356 (48%), Gaps = 113/356 (31%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV SH D L+ + RR A I+ LCK K +CE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESHAAFADA-LRFRDPKRRFDA-IWRLCKPKLVCE--- 55
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D +SL+ K+
Sbjct: 56 -----TMAVPDEDSLKESKE---------------------------------------- 70
Query: 214 GVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPL---------- 258
K HGGCG QP +RR GL LT WK NE Q +K P+
Sbjct: 71 -----PKHDHGGCGNIQPEVRREGLKLTGTWKAQKGDEENEGQQPEKKPITPQMVLNIFR 125
Query: 259 ------------------------------------------TGKGVL-LDDLTHKLADI 275
TG+G+ DDLT+KL DI
Sbjct: 126 HISTEEIRKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDI 185
Query: 276 IKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARL 335
I+ N + R E+ G+ HV++E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARL
Sbjct: 186 IRANGNVRRCETEGSPAHVVSEFESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARL 245
Query: 336 KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
KGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 246 KGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNI 301
>gi|394998789|gb|AFN44313.1| RNA polymerase II largest subunit, partial [Xanthoria elegans]
Length = 355
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 180/313 (57%), Gaps = 28/313 (8%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+ + P+ + L+ + RR + I+ K K ICE
Sbjct: 1 FLGKIKKLLETVCHNCGKIRADRNMPEFMEA-LRLRDPKRRFEG-IWRASKKKLICETSM 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
+D + P + ++ HGGCG QP IRR L LT WK +E Q +K
Sbjct: 59 PLD-----DDHPEKGKTQRHDHGGCGNIQPEIRREALKLTGTWKAQKGDDEHEGQQAEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTG 260
P+T + + LN + +I+ GL EW + I + G
Sbjct: 114 PITPQ-MALNVFRNIS-----VDDIKDLGLSNDYARPEWMIITVLPVPPPPVRPSISMDG 167
Query: 261 KGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
+ DDLT+KL DII+ N + R + G+ H+I E +LQFHVAT DN++ GLP
Sbjct: 168 GAGMRGEDDLTYKLGDIIRANGNVKRCDLEGSPQHLIQEFENLLQFHVATYMDNNIAGLP 227
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 QALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 287
Query: 379 NMTFPEIVTPFNM 391
+T+PE VTP+N+
Sbjct: 288 TLTYPETVTPYNI 300
>gi|394998785|gb|AFN44311.1| RNA polymerase II largest subunit, partial [Xanthoria aureola]
gi|394998787|gb|AFN44312.1| RNA polymerase II largest subunit, partial [Xanthoria candelaria]
gi|394998791|gb|AFN44314.1| RNA polymerase II largest subunit, partial [Xanthoria parietina]
gi|394998793|gb|AFN44315.1| RNA polymerase II largest subunit, partial [Xanthoria polycarpa]
Length = 355
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 129/313 (41%), Positives = 178/313 (56%), Gaps = 28/313 (8%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+ + + + + +RR I+ K K ICE
Sbjct: 1 FLGKIKKLLETVCHNCGKIRADRNMSEYVEALRHR--DPKRRFELIWRASKKKLICETSM 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
D ++P ++++ HGGCG QP IRR L LT WK +E Q +K
Sbjct: 59 PAD-----DDNPEKAKSQRHDHGGCGNIQPEIRREALKLTGTWKAQKGDDEHEGQQAEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTG 260
P+T + + LN + +I+ GL EW + I + G
Sbjct: 114 PITPQ-MALNIFRNIS-----TDDIKDMGLSNDYARPEWMIITVLPVPPPPVRPSISMDG 167
Query: 261 KGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
+ DDLT+KL DII+ N + R + G+ H+I E +LQFHVAT DN++ GLP
Sbjct: 168 GAGMRGEDDLTYKLGDIIRANGNVKRCDIEGSPQHLIQEFESLLQFHVATYMDNNIAGLP 227
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 QALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 287
Query: 379 NMTFPEIVTPFNM 391
+T+PE VTP+N+
Sbjct: 288 TLTYPETVTPYNI 300
>gi|12642610|gb|AAK00309.1|AF315819_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Botryocladia
uvarioides]
Length = 1712
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 128/329 (38%), Positives = 186/329 (56%), Gaps = 50/329 (15%)
Query: 76 CPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRR 135
CPGHFGHI+LAKP++++GF+ T+ +LRCVC +CSK+L + V+ ++ +K R R
Sbjct: 1 CPGHFGHIELAKPMYNIGFIKTTLSVLRCVCHFCSKILCPDA--TVQSLLKISKPTVRLR 58
Query: 136 QAFIYDLCKG-KNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
A Y C G K IC G + CG QP R G +
Sbjct: 59 NAMKY--CSGTKKICTGDNS-----------------------CGNLQPKYTREGFRIRQ 93
Query: 195 EWKHVNED-SQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQE 253
++ +E+ S+E K P L+ ++ + R R L L + + V ++
Sbjct: 94 QFDDNHEEYSKENKKPS------LSAEKVYDIFKRIS---DRDSLALGLDPRWVRPENLI 144
Query: 254 KKI----PLTGKGVLL-------DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKML 302
+ PL + ++ DDLT+KL DI+K NN L E+ G H++ E + ++
Sbjct: 145 LTVLPVPPLQVRPSVMHGGLRNEDDLTNKLGDIVKNNNMLRDMEAQGTVAHLLREQLDLV 204
Query: 303 QFHVATLTDNDMPGLPRAMQKSG-KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
Q+HVAT +N++PG+ +A + G + +K+I R KGKEGR+RGNLMGKRVDFSARTVITP
Sbjct: 205 QYHVATYMNNEIPGVSQATVRGGSRAIKSIGQRFKGKEGRVRGNLMGKRVDFSARTVITP 264
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFN 390
DPNL + +VGVP SIA+N+TFPE VT +N
Sbjct: 265 DPNLLLHEVGVPYSIAKNLTFPETVTSYN 293
>gi|157741608|gb|ABV69509.1| RNA polymerase II largest subunit, partial [Wahlenbergiella
striatula]
Length = 999
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/321 (40%), Positives = 178/321 (55%), Gaps = 22/321 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K KIL VC C K+ S + ++ + ++R I+ L
Sbjct: 1 IRLAVPVYHYGFLGKVKKILETVCHNCGKIKAIDSEELRYALSVRDR---KKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQG---HGGCGRYQPNIRRSGLDLTAEWKHV 199
+ +N C+ + ++L +K G HGGCG QP IR++GL+L A++K
Sbjct: 58 SQKQNTCQ-------ADPPDDGDDALIKEKIGRVRHGGCGNAQPAIRKTGLELWAQYKPA 110
Query: 200 NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNEDSQ-----E 253
D +E IP + Q + LD EW + +
Sbjct: 111 KGDDEEDIIPEKSQIWPAQALQVFQHLSDETLDTLGLNLDFARPEWMILQSLTVPPPPVR 170
Query: 254 KKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
I + G G DDLT KL DII+ N L+R + GA H+ E +LQ+HVAT
Sbjct: 171 PSISVDGSGQGQRGEDDLTFKLGDIIRANQNLLRVSAEGAPDHIAKELQALLQYHVATYM 230
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+V
Sbjct: 231 DNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEV 290
Query: 371 GVPRSIAQNMTFPEIVTPFNM 391
GVPR+IA+N+T+PE VT FN+
Sbjct: 291 GVPRTIARNLTYPETVTKFNI 311
>gi|119514084|gb|ABL75815.1| RNA polymerase II largest subunit [Umbilicaria spodochroa]
Length = 353
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 136/356 (38%), Positives = 174/356 (48%), Gaps = 113/356 (31%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV SH D L+ + RR A I+ LCK K +CE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESHLAFADA-LRFRDPKRRFDA-IWRLCKPKMVCETM- 57
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D +SL+ K+
Sbjct: 58 -------AVPDEDSLKESKE---------------------------------------- 70
Query: 214 GVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPL---------- 258
K HGGCG QP +RR GL LT WK NE Q +K P+
Sbjct: 71 -----PKHDHGGCGNIQPEVRREGLKLTGTWKAQKGDEENEGQQPEKKPITPQMALNIFR 125
Query: 259 ------------------------------------------TGKGVL-LDDLTHKLADI 275
TG+G+ DDLT+KL DI
Sbjct: 126 HISTEEIRKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDI 185
Query: 276 IKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARL 335
I+ N + R E+ G+ HV++E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARL
Sbjct: 186 IRANGNVRRCETEGSPAHVVSEFESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARL 245
Query: 336 KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
KGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 246 KGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 301
>gi|226876227|gb|ACO89434.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN493]
Length = 353
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/313 (41%), Positives = 170/313 (54%), Gaps = 26/313 (8%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+TK KIL VC C K+ + V L+ + +RR ++ L K + ICE
Sbjct: 1 GFMTKVKKILETVCHNCGKIKALDTEEFRHAVSLRDR---KRRFDAVWRLSKPRLICEAD 57
Query: 153 --DEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPL 210
+E D GA P HGGCG QP IRR GL L A WK + E P
Sbjct: 58 PPEEPDQPLKGAPQPK--------HGGCGNKQPEIRRQGLSLWASWKQEKSEDGEDNTP- 108
Query: 211 TGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVN-----EDSQEKKIPLTGKG 262
K + + + + GL L EW ++ I + G G
Sbjct: 109 -EKKRIFPQDALNTFRTLTDETLEMMGLSLDYARPEWMILSALPVPPPPVRPSISVDGSG 167
Query: 263 VLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPR 319
DDLT KL DII+ N ++R E G H+ + +LQ+H+AT DN++ GL +
Sbjct: 168 QGSRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDNEIAGLEK 227
Query: 320 AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 379
A KSG+P+K+++ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 AQHKSGRPIKSLRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 287
Query: 380 MTFPEIVTPFNMD 392
+TFPE VTPFN+D
Sbjct: 288 LTFPETVTPFNLD 300
>gi|120561164|gb|ABM26977.1| RNA polymerase II largest subunit [Nosema apis]
Length = 728
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 132/302 (43%), Positives = 173/302 (57%), Gaps = 38/302 (12%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
++ K KIL VCFYCSK+ KV +LK S +++ CK K CEG
Sbjct: 1 YLNKVKKILESVCFYCSKI-------KVDKKILKPDLNS------VWNYCKSKTTCEG-- 45
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
+N G+ GCG QP I++ GL L A K E++ + K+ L G+
Sbjct: 46 ---------------ENTPDGYTGCGNKQPLIKKEGLGLVAFMK--GEENSDGKVILNGE 88
Query: 214 GVL--LNK--KQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLT 269
VL L K +Q G N + L LT V S I + G DDLT
Sbjct: 89 RVLSILKKISEQDANYMGFDFVNSKPEWLILTVLL--VPPPSVRPSIVMEGMLRAEDDLT 146
Query: 270 HKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLK 329
HKLADIIK N L + E GA HVI + ++LQFH+AT+ DND+ G P+A+QKSG+P+K
Sbjct: 147 HKLADIIKANTYLKKYELEGAPGHVIRDYEQLLQFHMATMVDNDLSGQPQALQKSGRPIK 206
Query: 330 AIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPF 389
+I ARLKGKEGR+RGNLMGKRVDFSAR+VITPD N+ + ++GVP IA+ TFPE +T +
Sbjct: 207 SISARLKGKEGRVRGNLMGKRVDFSARSVITPDANISLIELGVPVEIAKIHTFPEAITSY 266
Query: 390 NM 391
N+
Sbjct: 267 NI 268
>gi|312273887|gb|ADQ57313.1| RNA polymerase II largest subunit, partial [Nosema disstriae]
Length = 974
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 131/306 (42%), Positives = 174/306 (56%), Gaps = 48/306 (15%)
Query: 96 TKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEM 155
+K KIL +CFYCS+L +S + LK + I+ + KGK +CEG
Sbjct: 1 SKLKKILESICFYCSRLKISRKN-------LKPDLNA------IWAVSKGKMVCEG---- 43
Query: 156 DINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV 215
+ ++G GCG QP I++ GL+L A K ED+ E K+ L G+ V
Sbjct: 44 -------------ELTEEGFNGCGNKQPVIKKEGLNLVAFMK--GEDNSEGKVILNGEKV 88
Query: 216 LLNKKQGHGGCGRYQ-PNIRRSGLDLTA---EWK-----HVNEDSQEKKIPLTGKGVLLD 266
H + +I G DL EW V S I + G D
Sbjct: 89 -------HSIFKKISDEDIEVLGFDLAYSRPEWLILTVLLVPPPSVRPSIVMEGMLRAED 141
Query: 267 DLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGK 326
DLTHKL+DIIK N L + E GA H+I + ++LQFHVATL DND+ G P+A+QKSG+
Sbjct: 142 DLTHKLSDIIKSNTYLKKYEMEGAPGHIIRDYEQLLQFHVATLIDNDISGQPQALQKSGR 201
Query: 327 PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIV 386
PLK+I ARLKGKEGR+RGNLMGKRVDFSAR+VIT D N+ +++VGVP +A+ TFPE +
Sbjct: 202 PLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPLEVAKIHTFPEKI 261
Query: 387 TPFNMD 392
TPFN++
Sbjct: 262 TPFNIE 267
>gi|119643881|gb|ABL85592.1| RNA polymerase II largest subunit [Degelia plumbea]
Length = 1002
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 125/277 (45%), Positives = 162/277 (58%), Gaps = 32/277 (11%)
Query: 133 RRRQAFIYDLCKGKNICEGGDEM-DINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLD 191
+RR I+ LCK K CE D N D + +P K HGGCG QP +RR GL
Sbjct: 58 KRRFDAIWRLCKPKMTCETASAAEDDNIDKSREP------KHDHGGCGNIQPEVRREGLR 111
Query: 192 LTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD----- 239
L WK NE Q +K P+T + L R+ I++ GL
Sbjct: 112 LNGTWKAQKGDEENEGQQPEKKPITPQMAL--------NIFRHISTEEIKKMGLSNDYAR 163
Query: 240 ---LTAEWKHVNEDSQEKKIPLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHV 294
+ V I + G + DDLT+KL DII+ N + R E+ G+ HV
Sbjct: 164 PEXMIITVLPVPPPPVRPSISVDGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHV 223
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
+ E ++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFS
Sbjct: 224 VMEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFS 283
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
ARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 284 ARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 320
>gi|226876152|gb|ACO89397.1| RNA polymerase II largest subunit, partial [Capronia parasitica]
Length = 983
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 174/315 (55%), Gaps = 30/315 (9%)
Query: 93 GFVTKTIKILRCVCFYCSKL--LVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICE 150
GF+TK KIL VC C K+ L +P + + T+ + RR A ++ L K +N+CE
Sbjct: 1 GFMTKVKKILETVCHNCGKIKALDTPEFQQA----ISTRDRKRRFDA-VWRLSKPRNVCE 55
Query: 151 GGDEMDINKDGAEDPNSLQNKKQ--GHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKI 208
D E+P+ L HGGCG QP+IRR+GL L A WK D E
Sbjct: 56 A--------DPPEEPDQLLKGPPLPKHGGCGNAQPDIRRTGLSLWASWKPRKGDDDEDTT 107
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVNE-----DSQEKKIPLTG 260
P K + + + + GL L EW + I + G
Sbjct: 108 P--EKKRIFPQDALNTFRTLTDETLEMMGLSLDYARPEWMILTALPVPPPPVRPSISVDG 165
Query: 261 KGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGL 317
G DDLT KL DII+ N ++R E G H+ + +LQ+H+AT DN++ GL
Sbjct: 166 SGQGSRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDNEIAGL 225
Query: 318 PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 377
+A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA
Sbjct: 226 DKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIA 285
Query: 378 QNMTFPEIVTPFNMD 392
+ +T+PE VT FN++
Sbjct: 286 RTLTYPETVTAFNIE 300
>gi|336091018|gb|AEI00186.1| RNA polymerase II largest subunit [Capronia peltigerae]
Length = 973
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 133/330 (40%), Positives = 179/330 (54%), Gaps = 42/330 (12%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
+ LA+PV+H GF+TK K+L VC C K+ + R L TK R + ++ L
Sbjct: 2 VKLAEPVYHHGFLTKVKKVLETVCHNCGKIKALDNLE--RQAALATKHPKGRFEK-LWRL 58
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKH-VNE 201
K + ICE A+D N K HGGCG QP IR+ GL L A +K NE
Sbjct: 59 SKPRLICEPSP-------SADDDNPKAPKGPDHGGCGNVQPLIRKKGLALEAHYKKGKNE 111
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQE------KK 255
D +E + + H R I + D T +N+D +
Sbjct: 112 DDEEVQT------------ETHRIYARRALQILQLLTDETITMMGLNKDYARPEWFILQS 159
Query: 256 IPLTGKGVL-------------LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKML 302
+P+ V DDLT+KLADI++ N + R E G H+ + + +L
Sbjct: 160 LPVPPPAVRPSVSQDGGTGPRNEDDLTYKLADIVRANQSVTRCEVDGTPEHIKNQLVDLL 219
Query: 303 QFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD 362
++H+ T DN++ GL RA KSG+P+KAI+ARLKGKEGR+R NLMGKRVDFSARTVIT D
Sbjct: 220 EYHINTYMDNEIAGLDRAQHKSGRPIKAIRARLKGKEGRLRQNLMGKRVDFSARTVITGD 279
Query: 363 PNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PNL +D+VGVPRSIA+ +TFPE VT FN++
Sbjct: 280 PNLSLDEVGVPRSIARTLTFPETVTNFNIE 309
>gi|394998755|gb|AFN44296.1| RNA polymerase II largest subunit, partial [Caloplaca cf. squamosa
Gaya 49]
Length = 355
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/313 (41%), Positives = 178/313 (56%), Gaps = 28/313 (8%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+ + P + + +RR I+ K K +CE
Sbjct: 1 FLGKIKKLLETVCHNCGKIRADRNMPDFVEALRHR--DPKRRFDGIWRASKKKLVCETTL 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKI 208
+D + P ++++ HGGCG QP IRR L LT WK +E Q +K
Sbjct: 59 PLD-----DDHPEKAKSQRHDHGGCGNIQPEIRREALKLTGTWKAQKGDDEHEGQQAEKK 113
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVNEDSQEK-----KIPLTG 260
P+T + + LN + +I+ GL EW + I + G
Sbjct: 114 PITPQ-MALNVFRNIS-----TDDIKVMGLSNDYARPEWMIITVLPVPPPPVRPSISMDG 167
Query: 261 KGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
+ DDLT+KL DII+ N + R + G+ H+I E +LQFHVAT DN++ GLP
Sbjct: 168 GAGMRGEDDLTYKLGDIIRANGNVKRCDLEGSPQHLIQEFENLLQFHVATYMDNNIAGLP 227
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 QALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 287
Query: 379 NMTFPEIVTPFNM 391
+T+PE VTP+N+
Sbjct: 288 TLTYPETVTPYNI 300
>gi|226876187|gb|ACO89414.1| RNA polymerase II largest subunit, partial [Exophiala nigra]
Length = 358
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 131/315 (41%), Positives = 173/315 (54%), Gaps = 26/315 (8%)
Query: 91 HVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICE 150
H G +TK KIL VC C K+ + V L+ + +RR ++ L K + +CE
Sbjct: 1 HYGXLTKVKKILETVCHNCGKIKALDTEEFRHAVSLRDR---KRRFDAVWRLSKPRLVCE 57
Query: 151 GGDEMDINKDGAEDPNS-LQNKKQ-GHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKI 208
D EDP+ L+ Q HGGCG QP IRR+GL L A WK D E
Sbjct: 58 A--------DPPEDPDQPLKGPPQPKHGGCGNAQPEIRRTGLQLWATWKPRKGDDDEDIT 109
Query: 209 PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVN-----EDSQEKKIPLTG 260
P K + + + + GL L EW ++ I + G
Sbjct: 110 P--DKKRIFPQDALNTFRTLTDETLEMMGLSLDYARPEWMILSALPVPPPPVRPSISVDG 167
Query: 261 KGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGL 317
G DDLT KL DII+ N ++R E G H+ + +LQ+H+AT DN++ GL
Sbjct: 168 SGQGSRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDNEIAGL 227
Query: 318 PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 377
+A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA
Sbjct: 228 EKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIA 287
Query: 378 QNMTFPEIVTPFNMD 392
+ +T+PE VTPFN+D
Sbjct: 288 RTLTYPETVTPFNLD 302
>gi|288561071|ref|YP_003424557.1| DNA-directed RNA polymerase subunit A' RpoA1 [Methanobrevibacter
ruminantium M1]
gi|288543781|gb|ADC47665.1| DNA-directed RNA polymerase subunit A' RpoA1 [Methanobrevibacter
ruminantium M1]
Length = 926
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 201/389 (51%), Gaps = 41/389 (10%)
Query: 21 LSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGH 79
+SPD+IR MSV I P+T E G P GLMD R GVID S +C+TC EC GH
Sbjct: 1 MSPDQIREMSVV--NITRPDTYDEDGYPIENGLMDSRLGVIDPSLKCRTCGEKGGECQGH 58
Query: 80 FGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV---VLKTKGQSRRRQ 136
FG IDLA+PV HVGF KILR C C ++L+ + L+ G+S
Sbjct: 59 FGMIDLARPVIHVGFGDDIHKILRSTCNECGRVLLDEEEIEEYTEKLNELQEAGESTEDL 118
Query: 137 A-FIYDLCKGK---NICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGL 190
+Y +CK K ++C G ++ DI P + ++ + G + +G
Sbjct: 119 IKEVYKICKAKKAKDVCPHCGAEQEDIK---IVKPIGIIEVRKEYDENGELLTDA--NGN 173
Query: 191 DLTAEWKHVNEDSQEK--KIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK--- 245
+T ++ + +EK +IP VL P + R EW
Sbjct: 174 PVTTDYDLTASEVREKLERIPDEDAYVL-----------GVNPEVARP------EWMVLT 216
Query: 246 --HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQ 303
V + I L DDLTHKL DI++ N LI N +GA ++ + ++LQ
Sbjct: 217 VLPVPPVTVRPSITLDTGERSEDDLTHKLVDILRINQRLIENMDAGAPQLIVEDLWQLLQ 276
Query: 304 FHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP 363
+HV T DN+ G+P A +SG+PLK + RLKGKEGR R NL GKRV+FSARTVI+PDP
Sbjct: 277 YHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVISPDP 336
Query: 364 NLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
N+ I++VGVP IA+ +T P V +N++
Sbjct: 337 NISINEVGVPEMIAKEVTVPTYVNEWNIE 365
>gi|226876179|gb|ACO89410.1| RNA polymerase II largest subunit, partial [Exophiala bergeri]
Length = 354
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 130/313 (41%), Positives = 173/313 (55%), Gaps = 26/313 (8%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+TK KIL VC C K+ + V L+ + +RR ++ L K + +CE
Sbjct: 2 GFMTKVKKILETVCHNCGKIKALDTEEFRHAVSLRDR---KRRFDAVWRLSKPRLVCEA- 57
Query: 153 DEMDINKDGAEDPNS-LQNKKQ-GHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPL 210
D E+P+ L+ Q HGGCG QP IRR GL L A WK D E+ P
Sbjct: 58 -------DPPEEPDQPLKGPAQPKHGGCGNKQPEIRRQGLSLWATWKPQKGDDDEETTP- 109
Query: 211 TGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVN-----EDSQEKKIPLTGKG 262
K + + + + GL L EW ++ I + G G
Sbjct: 110 -DKKRIFPQDALNTFRTLTDETLDMMGLSLDYARPEWMILSALPVPPPPVRPSISVDGSG 168
Query: 263 VLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPR 319
DDLT KL DII+ N ++R E G H+ + +LQ+H+AT DN++ GL +
Sbjct: 169 QGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDNEIAGLEK 228
Query: 320 AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 379
A KSG+P+K+++ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 229 AQHKSGRPIKSLRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 288
Query: 380 MTFPEIVTPFNMD 392
+TFPE VTPFN+D
Sbjct: 289 LTFPETVTPFNLD 301
>gi|206601383|gb|ACI16410.1| RNA polymerase II largest subunit [Polyblastia sp. Savic 3164]
Length = 356
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/308 (41%), Positives = 173/308 (56%), Gaps = 18/308 (5%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+ S +R V G ++R I+ L + +N+C+
Sbjct: 1 FLGKVKKLLETVCHNCGKIKAVDSE-DLRYAVSVRDG--KKRFDLIWRLSQKQNVCQADS 57
Query: 154 EMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTG 212
D +DPN+ + K HGGCG QP IR++GL+L A++K D +E+ +P
Sbjct: 58 PED-----EDDPNAKEKGGKIRHGGCGNAQPAIRKAGLELWAQYKPRKGDDEEETVPEKS 112
Query: 213 KGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQEKKIPLTGKGVLL- 265
+ Q + LD EW + I + G G
Sbjct: 113 QIWPAQALQVFQHLTDETLDTLGMNLDFARPEWMILQSLPVPPPPVRPSISVDGSGQGQR 172
Query: 266 --DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQK 323
DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DND+ L +A K
Sbjct: 173 GEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATYMDNDIANLDKAQHK 232
Query: 324 SGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFP 383
SG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+N+T+P
Sbjct: 233 SGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARNLTYP 292
Query: 384 EIVTPFNM 391
E VTPFN+
Sbjct: 293 ETVTPFNV 300
>gi|307353875|ref|YP_003894926.1| DNA-directed RNA polymerase subunit A' [Methanoplanus petrolearius
DSM 11571]
gi|307157108|gb|ADN36488.1| DNA-directed RNA polymerase subunit A' [Methanoplanus petrolearius
DSM 11571]
Length = 880
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 204/385 (52%), Gaps = 40/385 (10%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTCAG 71
V K++FG+LSP +IR+MSV + I + +T + G P GLMD GVID RC+TC
Sbjct: 7 VGKIEFGLLSPKDIRKMSVRK--IIWADTYDDDGFPYPQGLMDLHLGVIDPGLRCKTCGN 64
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKG- 130
++CPGHFGHI+LAKPV HVG+ K+LR C C +LL+S D + K G
Sbjct: 65 RASDCPGHFGHIELAKPVIHVGYTRLIRKLLRVSCRECGRLLLS------EDEIHKVLGP 118
Query: 131 QSRRRQAFIYDL-CKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRR 187
+ R + I + K + +C G ++ IN + + + + G + P R
Sbjct: 119 EDERNEDVISEKDIKKERVCPYCGEQQLKINFEKPTTFSEVMTDENGRKIDHKLTPADIR 178
Query: 188 SGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHV 247
+ L+ K +ED L G+ + C P +T +
Sbjct: 179 ARLE-----KIPDED-------LRLLGINPEVARPEWTCLTVLPV-----PPVTMRPSII 221
Query: 248 NEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVA 307
E+ Q + LT K L DII+ N N+ +GA +I + ++LQ+HV
Sbjct: 222 LENGQRSEDDLTHK----------LVDIIRINQRFKENQDAGAPQLIIEDLWELLQYHVT 271
Query: 308 TLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRI 367
T DN++ G P A +SG+PLK I RLKGK+GR RG+L GKRV+FSARTVI+PDPNL I
Sbjct: 272 TYLDNEVAGCPPARHRSGRPLKTISQRLKGKDGRFRGSLSGKRVNFSARTVISPDPNLSI 331
Query: 368 DQVGVPRSIAQNMTFPEIVTPFNMD 392
QVG+P ++A M+ P VTPFN++
Sbjct: 332 GQVGIPLAVANEMSVPIRVTPFNIE 356
>gi|119643962|gb|ABL85597.1| RNA polymerase II largest subunit [Lopezaria versicolor]
Length = 359
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 126/277 (45%), Positives = 164/277 (59%), Gaps = 29/277 (10%)
Query: 133 RRRQAFIYDLCKGKNICE---GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSG 189
+RR I+ LCK K +CE G DE + D + K HGGCG P IRR G
Sbjct: 40 KRRFDAIWRLCKPKTLCETSAGADE-----EAPSDEFEKKKVKHDHGGCGNIHPEIRREG 94
Query: 190 LDLTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LT 241
L L WK +E Q +K P+T + + LN + + R+ GL
Sbjct: 95 LRLNGTWKVQKGDEESEGQQPEKKPITPQ-MALNIFRNIS-----TEDARKIGLSNDYAR 148
Query: 242 AEWKHVNEDSQEK-----KIPLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHV 294
EW + I + G L DDLT+KL DII+ N + R E+ G+ HV
Sbjct: 149 PEWMVITVLPVPPPPVRPSIAVDGGNGLRGEDDLTYKLGDIIRANGNVRRCETEGSPAHV 208
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
+ E ++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFS
Sbjct: 209 VGEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFS 268
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
ARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 269 ARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 305
>gi|150399424|ref|YP_001323191.1| DNA-directed RNA polymerase subunit A' [Methanococcus vannielii SB]
gi|1173129|sp|P41556.1|RPOA1_METVS RecName: Full=DNA-directed RNA polymerase subunit A'
gi|505292|emb|CAA51728.1| DNA-directed RNA polymerase [Methanococcus vannielii]
gi|150012127|gb|ABR54579.1| DNA-directed RNA polymerase subunit A' [Methanococcus vannielii SB]
Length = 889
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 138/379 (36%), Positives = 203/379 (53%), Gaps = 31/379 (8%)
Query: 16 VQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTCAGNMT 74
+ FG+LSP++IR MSV + I +T + G P GGLMD R GVID C++C+G +
Sbjct: 13 ITFGLLSPEQIRTMSVAK--IVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCKSCSGRVG 70
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
CPGHFGHI+L+K V H+GF K+L+ V P KV +K
Sbjct: 71 TCPGHFGHIELSKSVIHIGFAKDIYKLLKA---------VCPHCGKVTVTEIK------- 114
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
R ++ + K + +GGD ++ D ++ K CG + +I+ D
Sbjct: 115 RDEYLEKMLKLEE--DGGDPWTLSDDLLKEAA----KSSVCPSCGEVKYDIK---YDKPT 165
Query: 195 EWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDSQE 253
+ ++ SQ++ + +L +K + C N R + + + V +
Sbjct: 166 TYHQLDGKSQKQLTSSEVREIL--EKIPNEDCKLLGINSRVARPEYMVLTVLPVPPVTVR 223
Query: 254 KKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDND 313
I L DDLTHKL DII+ N L N + GA +I + +LQ+H+ T DN+
Sbjct: 224 PSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNE 283
Query: 314 MPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVP 373
PG+P A +SG+PL+ + RLKGKEGR R NL GKRV+FSARTVI+PDP L I++VG+P
Sbjct: 284 APGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINEVGIP 343
Query: 374 RSIAQNMTFPEIVTPFNMD 392
IA+ +T PE VTP+N++
Sbjct: 344 ELIAKELTVPEKVTPYNIE 362
>gi|226876217|gb|ACO89429.1| RNA polymerase II largest subunit, partial [Chaetothyriomycetidae
sp. TRN242]
Length = 980
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 130/314 (41%), Positives = 175/314 (55%), Gaps = 24/314 (7%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+TK KIL VC C K+ + S + ++ + +RR I+ L K K ICE
Sbjct: 2 GFMTKVKKILETVCXXCGKIKATDSEDLRHALSVRDR---KRRFEMIWRLSKPKLICEAD 58
Query: 153 DEMDINKDGAEDPNSLQNKKQG-----HGGCGRYQPNIRRSGLDLTAEWK----HVNEDS 203
AED K++G HGGCG QP IR+S L L A WK ED+
Sbjct: 59 PP-------AEDEEGGFAKEKGAPQALHGGCGNAQPEIRKSELKLWASWKPRKGEDEEDT 111
Query: 204 QEKKIPLTGKGVL----LNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLT 259
K L + L L + G R + L A + +
Sbjct: 112 VADKQRLFPEEALRILKLLSDETLETLGMNLDFARPEWMILQALPVPPPPVRPSISVDGS 171
Query: 260 GKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
G+G DDLT KLADI++ N ++ R E+ G H+ ++ +LQ+H+AT DN++ GL
Sbjct: 172 GQGSRGEDDLTFKLADIVRANQQVTRAEADGTPDHIKIDHKDLLQYHIATYMDNNIAGLS 231
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
+ KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVP+SIA+
Sbjct: 232 PSQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKSIAR 291
Query: 379 NMTFPEIVTPFNMD 392
N+T+PE VTPFN+D
Sbjct: 292 NLTYPETVTPFNLD 305
>gi|206601361|gb|ACI16399.1| RNA polymerase II largest subunit [Polyblastia abscondita]
Length = 356
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 127/308 (41%), Positives = 172/308 (55%), Gaps = 18/308 (5%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+ S V ++ + ++R I+ L + +NIC+
Sbjct: 1 FLGKVKKLLETVCHNCGKIKAVDSEDLRYAVSVRDR---KKRFDLIWRLSQKQNICQADS 57
Query: 154 EMDINKDGAEDPNSLQN-KKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTG 212
D +DPN+ + K HGGCG QP IR++GL+L A++K D +E+ +P
Sbjct: 58 PED-----EDDPNAKEKGTKIRHGGCGNAQPAIRKAGLELWAQFKPRKGDDEEETVPEKS 112
Query: 213 KGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQEKKIPLTGKGVLL- 265
+ Q + LD EW + I + G G
Sbjct: 113 QIWPAQALQVFQHLTDETLDTLGMNLDFARPEWMILQSLPVPPPPVRPSISVDGSGQGQR 172
Query: 266 --DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQK 323
DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DND+ L +A K
Sbjct: 173 GEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATYMDNDIAHLDKAQHK 232
Query: 324 SGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFP 383
SG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+P
Sbjct: 233 SGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYP 292
Query: 384 EIVTPFNM 391
E VTPFN+
Sbjct: 293 ETVTPFNI 300
>gi|157741546|gb|ABV69478.1| RNA polymerase II largest subunit, partial [Staurothele immersa]
Length = 355
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 126/308 (40%), Positives = 173/308 (56%), Gaps = 18/308 (5%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+ S V ++ + ++R I+ L + +N+C+
Sbjct: 1 FLGKVKKLLETVCHNCGKIKAVDSEDLRYAVSVRDR---KKRFDLIWRLSQKQNVCQADS 57
Query: 154 EMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTG 212
D +DPN+ + K HGGCG QP IR++GL+L A++K D +E+ +P
Sbjct: 58 PED-----DDDPNAKEKGGKIRHGGCGNAQPAIRKAGLELWAQYKPRKGDDEEETVPEKS 112
Query: 213 KGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQEKKIPLTGKGVLL- 265
+ + Q + LD EW + I + G G
Sbjct: 113 QIWPAHALQVFQHLTDETLDTLGMNLDFARPEWMILQSLPVPPPPVRPSISVDGSGQGQR 172
Query: 266 --DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQK 323
DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DND+ L +A K
Sbjct: 173 GEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATYMDNDIANLDKAQHK 232
Query: 324 SGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFP 383
SG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+P
Sbjct: 233 SGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYP 292
Query: 384 EIVTPFNM 391
E VTPFN+
Sbjct: 293 ETVTPFNI 300
>gi|157741550|gb|ABV69480.1| RNA polymerase II largest subunit, partial [Thelidium decipiens]
Length = 977
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/308 (40%), Positives = 172/308 (55%), Gaps = 18/308 (5%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+ S V ++ + ++R ++ L + +N+C+
Sbjct: 1 FLGKVKKLLETVCHNCGKIKAVDSEDLRYAVSVRDR---KKRFDLVWRLSQKQNVCQADS 57
Query: 154 EMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTG 212
D +DPN+ + K HGGCG QP IR+SGL+L A++K D +E+ +P
Sbjct: 58 PED-----EDDPNAKEKGGKIRHGGCGNAQPAIRKSGLELWAQYKPRKGDDEEETVPEKS 112
Query: 213 KGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQEKKIPLTGKGVLL- 265
+ Q + LD EW + I + G G
Sbjct: 113 QIWPAQALQVFQHLTDETLDTLGMNLDFARPEWMILQSLPVPPPPVRPSISVDGSGQGQR 172
Query: 266 --DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQK 323
DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DND+ L +A K
Sbjct: 173 GEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATYMDNDIANLDKAQHK 232
Query: 324 SGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFP 383
SG+P+K+I+ARLKGKEGR+R +LMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+P
Sbjct: 233 SGRPIKSIRARLKGKEGRLRQSLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYP 292
Query: 384 EIVTPFNM 391
E VTPFN+
Sbjct: 293 ETVTPFNI 300
>gi|443918878|gb|ELU39223.1| DNA-directed RNA polymerase II largest subunit [Rhizoctonia solani
AG-1 IA]
Length = 1531
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/267 (46%), Positives = 163/267 (61%), Gaps = 15/267 (5%)
Query: 133 RRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDL 192
++R A ++ CKGK ICE + D +GA + Q K GHGGCG QP IR+ GL L
Sbjct: 18 KKRMALVWAHCKGKMICEADETKD--DEGA----AAQPAKVGHGGCGHVQPLIRKEGLKL 71
Query: 193 TAEWKHVNE--DSQEKKIPLTGKGVLLNKKQ----GHGGCGRYQPNIRRSGLDLTAEWKH 246
+K + SQ +K V K+ G + R + LT
Sbjct: 72 FLVYKKGRDGRTSQPEKRLYPASDVYNTLKKIPDSDLALLGLSEEFARPDWMILTV--LP 129
Query: 247 VNEDSQEKKIPLTGKGVLL-DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFH 305
V I G V DDLT+KL DI+K + + R E G+ HVI+E ++LQFH
Sbjct: 130 VPPPPVRPSISADGGTVRSEDDLTYKLGDILKASINVRRCEEEGSPAHVISEFEQLLQFH 189
Query: 306 VATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNL 365
VAT DND+ G+P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSARTVIT DPNL
Sbjct: 190 VATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNL 249
Query: 366 RIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+D+VGVPRS+A N+T+PE VTP+N++
Sbjct: 250 MLDEVGVPRSMAMNLTYPERVTPYNIE 276
>gi|226876235|gb|ACO89438.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN515]
Length = 983
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 126/309 (40%), Positives = 171/309 (55%), Gaps = 18/309 (5%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+TK KIL VC K+ S + ++ + +RR ++ L K +N+CE
Sbjct: 1 GFMTKVKKILEMVCXXXGKIKALDSEDLRHALSIRDR---KRRFDAVWRLSKPRNVCEAD 57
Query: 153 DEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK----HVNEDSQEKKI 208
D + P HGGCG QP+IRR+GL L A WK +ED+ +K
Sbjct: 58 PPEDADGPAKGAPTV------RHGGCGNAQPDIRRTGLQLWASWKAKKGEDDEDTTPEKK 111
Query: 209 PLTGKGVL----LNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV- 263
+ L L + G R + L A + +G+G
Sbjct: 112 RIFPNDALNTFRLLTDETLEAMGLSLDYARPEWMILQALPVPPPPVRPSISVDGSGQGQH 171
Query: 264 LLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQK 323
DDLT KL DII+ N ++R E G H+ + +LQ+H+AT DND+ GL +A K
Sbjct: 172 SEDDLTFKLGDIIRANQAVLRCEVDGTPDHIKVDLQDLLQYHIATYMDNDIAGLDKAQHK 231
Query: 324 SGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFP 383
SG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+P
Sbjct: 232 SGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYP 291
Query: 384 EIVTPFNMD 392
E+VTPFN+D
Sbjct: 292 EVVTPFNID 300
>gi|226876156|gb|ACO89399.1| RNA polymerase II largest subunit, partial [Capronia sp. WUC
15.551]
Length = 984
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 174/313 (55%), Gaps = 26/313 (8%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF++K KIL VC C K+ + + L+ + +RR ++ L K + ICE
Sbjct: 2 GFMSKVKKILETVCHNCGKIKALDNEELRHAISLRDR---KRRFDAVWRLSKPRAICEA- 57
Query: 153 DEMDINKDGAEDPNS-LQNKKQ-GHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPL 210
D EDP+ L+ Q HGGCG QP+IRR+GL L A WK + E P
Sbjct: 58 -------DPPEDPDQPLKGPPQPKHGGCGNAQPDIRRTGLQLWATWKARKGEDDEDTTP- 109
Query: 211 TGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVNE-----DSQEKKIPLTGKG 262
K + + + + + GL L EW ++ I + G G
Sbjct: 110 -DKKRIFPQDALNTFRTLTDETLEKMGLSLDYARPEWMILSALPVPPPPVRPSISVDGSG 168
Query: 263 VLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPR 319
DDLT KL DII+ N ++R E G H+ + +LQ+H+AT DN++ GL +
Sbjct: 169 QGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDNEIAGLDK 228
Query: 320 AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 379
A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 229 AQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 288
Query: 380 MTFPEIVTPFNMD 392
+T+PE VT FN+D
Sbjct: 289 LTYPENVTAFNLD 301
>gi|206601385|gb|ACI16411.1| RNA polymerase II largest subunit [Polyblastia integrascens]
Length = 358
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 170/309 (55%), Gaps = 20/309 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR-RQAFIYDLCKGKNICEGG 152
F+ K K+L VC C K+ S D+ + R+ R I+ L + +N+C+
Sbjct: 1 FLGKVKKLLETVCHNCGKIKAVESE----DLRYAVSNRDRKKRFELIWRLSQKQNVCQAD 56
Query: 153 DEMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLT 211
D +DPN+ + K HGGCG QP IR++GL+L A++K D +E+ +P
Sbjct: 57 SPED-----EDDPNAKEKGGKIRHGGCGNAQPVIRKTGLELWAQYKSRKGDDEEETVPEK 111
Query: 212 GKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQEKKIPLTGKGVLL 265
+ Q LD EW + I + G G
Sbjct: 112 SQIWPAQALQVFQHLTDETLETLGMNLDFARPEWMILQSLPVPPPPVRPSISVDGSGQGS 171
Query: 266 ---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQ 322
DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DND+ L +A
Sbjct: 172 RGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATYMDNDIANLDKAQH 231
Query: 323 KSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTF 382
KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+
Sbjct: 232 KSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTY 291
Query: 383 PEIVTPFNM 391
PE VTPFN+
Sbjct: 292 PETVTPFNI 300
>gi|226876241|gb|ACO89441.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp. H5]
Length = 353
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/313 (41%), Positives = 169/313 (53%), Gaps = 26/313 (8%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF TK KIL VC C K+ + + L+ + +RR ++ L K + +CE
Sbjct: 1 GFXTKVKKILETVCHNCGKIKALDTEEFRHAISLRDR---KRRFDAVWRLSKPRLVCEAD 57
Query: 153 --DEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPL 210
DE D G P HGGCG QP IRR+GL L A WK D E P
Sbjct: 58 PPDEPDQLVKGPPQPK--------HGGCGNAQPEIRRTGLQLWATWKPRKGDDDEDITP- 108
Query: 211 TGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVN-----EDSQEKKIPLTGKG 262
K + + + + GL L EW ++ I + G G
Sbjct: 109 -DKKRIFPQDALNTFRTLTDETLEMMGLSLDYARPEWMILSALPVPPPPVRPSISVDGSG 167
Query: 263 VLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPR 319
DDLT KL DII+ N ++R E G H+ + +LQ+H+AT DN++ GL +
Sbjct: 168 QGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDNEIAGLEK 227
Query: 320 AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 379
A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 AQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 287
Query: 380 MTFPEIVTPFNMD 392
+T+PE VTPFN+D
Sbjct: 288 LTYPETVTPFNLD 300
>gi|123979340|gb|ABM81495.1| RNA polymerase II largest subunit [Tornabea scutellifera]
Length = 993
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 133/355 (37%), Positives = 173/355 (48%), Gaps = 112/355 (31%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L +C C K+ V S+ +D L+ + +R A I+ LCK K +CE
Sbjct: 1 FITKIKKLLETICHNCGKIKVDESNQAFKDA-LRMRDPKKRFDA-IWRLCKPKMVCE--- 55
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
M +++D ED++E P+
Sbjct: 56 -MSVSQD----------------------------------------EDNKE---PVKDS 71
Query: 214 GVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLL--- 265
G GHGGCG QP +RR GL L WK +E Q +K P+T K L
Sbjct: 72 G------SGHGGCGNVQPEVRRDGLKLMGTWKPQKGDEESEGQQPEKKPITPKMALAVFQ 125
Query: 266 -------------------------------------------------DDLTHKLADII 276
DDLT+KL DII
Sbjct: 126 AMSTDDIKKLGLSNDYARPEWMIITVLPVPPPPVRPSIKVDGGDGPTGEDDLTYKLGDII 185
Query: 277 KCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLK 336
+ N + R E+ G H+I E +LQFHVAT ND G P+A+QKSG+P+KAI+ARLK
Sbjct: 186 RANGNVRRGETEGTPAHIIEEFETLLQFHVATYMSNDTAGQPQALQKSGRPVKAIRARLK 245
Query: 337 GKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
GKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 246 GKEGRVRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 300
>gi|157741590|gb|ABV69500.1| RNA polymerase II largest subunit, partial [Verrucaria macrostoma]
Length = 358
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 172/310 (55%), Gaps = 20/310 (6%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+ K K+L VC C K+ S + ++ ++R I+ L + +N+C+
Sbjct: 2 GFLGKVKKLLETVCHNCGKIKAVDSEDLRYALTVRN---PKKRFELIWRLSQKQNVCQAD 58
Query: 153 DEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTG 212
D A+D ++ K GHGGCG QP IRRSGL+L A+ K D E+ +P
Sbjct: 59 SPEDEEDPMAKD----KSGKVGHGGCGNAQPQIRRSGLELWAQHKPRKGDDDEETVP--E 112
Query: 213 KGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQEKKIPLTGKGVL 264
K + + + GL+L EW + I + G G
Sbjct: 113 KSQIWPAQALEVFQHLTDETLETLGLNLDFARPEWMILQSLPVPPPPVRPSISVDGSGQG 172
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DND+ L +A
Sbjct: 173 SRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDNDIANLDKAQ 232
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T
Sbjct: 233 HKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLT 292
Query: 382 FPEIVTPFNM 391
+PE VT FN+
Sbjct: 293 YPETVTRFNI 302
>gi|206601393|gb|ACI16415.1| RNA polymerase II largest subunit [Polyblastia lutosa]
Length = 356
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 128/308 (41%), Positives = 172/308 (55%), Gaps = 18/308 (5%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+ S +R V G ++R I+ L + +N+C+
Sbjct: 1 FLGKVKKLLETVCHNCGKIKAVDSE-DLRYAVSVRDG--KKRFDLIWRLSQKQNVCQADS 57
Query: 154 EMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTG 212
D +DPN+ + K HGGCG QP IR++GL+L A++K D +E+ +P
Sbjct: 58 PED-----EDDPNAKEKGGKIRHGGCGNAQPAIRKAGLELWAQYKPRKGDDEEETVPEKS 112
Query: 213 KGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQEKKIPLTGKGVLL- 265
+ Q + LD EW + I + G G
Sbjct: 113 QIWPAQALQVFQHLTDETLDTLGMNLDFARPEWMILQSLPVPPPPVRPSISVDGSGQGQR 172
Query: 266 --DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQK 323
DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DND+ L +A K
Sbjct: 173 GEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATYMDNDIANLDKAQHK 232
Query: 324 SGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFP 383
SG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+P
Sbjct: 233 SGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYP 292
Query: 384 EIVTPFNM 391
E VTPFN+
Sbjct: 293 ETVTPFNV 300
>gi|206601369|gb|ACI16403.1| RNA polymerase II largest subunit [Polyblastia moravica]
gi|206601381|gb|ACI16409.1| RNA polymerase II largest subunit [Polyblastia moravica]
Length = 356
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 128/311 (41%), Positives = 172/311 (55%), Gaps = 24/311 (7%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+ S +R V G ++R I+ L + +N+C+
Sbjct: 1 FLGKVKKLLETVCHNCGKIKAVDSE-DLRYAVSVRDG--KKRFDLIWRLSQKQNVCQA-- 55
Query: 154 EMDINKDGAEDPNSLQNKKQG----HGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIP 209
D ED + K++G HGGCG QP IR++GL+L A++K D +E+ +P
Sbjct: 56 ------DSLEDEDDPNAKEKGGKIRHGGCGNAQPAIRKAGLELWAQYKPRKGDDEEETVP 109
Query: 210 LTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQEKKIPLTGKGV 263
+ Q + LD EW + I + G G
Sbjct: 110 EKSQIWPAQALQVFQHLTDETLDTLGMNLDFARPEWMILQSLPVPPPPVRPSISVDGSGQ 169
Query: 264 LL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRA 320
DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DND+ L +A
Sbjct: 170 GQRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATYMDNDIANLDKA 229
Query: 321 MQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNM 380
KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +
Sbjct: 230 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 289
Query: 381 TFPEIVTPFNM 391
T+PE VTPFN+
Sbjct: 290 TYPETVTPFNV 300
>gi|110669643|gb|ABG81916.1| RNA polymerase II largest subunit, partial [Agonimia sp. AFTOL 684]
Length = 1023
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 133/375 (35%), Positives = 179/375 (47%), Gaps = 112/375 (29%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
ECPGHFG I LA PV+H GF+ K KIL VC C K+ S + ++ + ++
Sbjct: 1 ECPGHFGTIKLAVPVYHYGFLGKVKKILETVCHNCGKIKAVDSEELRYALSIRDR---KK 57
Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
R I+ L + +NIC+ D A++ + K +G
Sbjct: 58 RFELIWRLSQKQNICQA--------DSADEEDDPFGKDKG-------------------- 89
Query: 195 EWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK--------- 245
K HGGCG QP IR++GL+L A++K
Sbjct: 90 ------------------------GKIKHGGCGNAQPAIRKTGLELWAQYKPRKGDDDEE 125
Query: 246 ------------------HVNEDSQE---------------------------KKIPLTG 260
H+ +D+ E I + G
Sbjct: 126 TVPEKSQIWPAQALQVFQHLTDDTLETLGLNLDFARPEWMILQSLPVPPPPVRPSISVDG 185
Query: 261 KGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGL 317
G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DND+ L
Sbjct: 186 SGQGSRGEDDLTFKLGDIIRANQNLIRVNAEGAPEHIAKELQALLQYHVATYMDNDIANL 245
Query: 318 PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 377
+A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVP SIA
Sbjct: 246 DKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIA 305
Query: 378 QNMTFPEIVTPFNMD 392
+ +T+PE VT +N++
Sbjct: 306 RTLTYPETVTQYNIN 320
>gi|119514106|gb|ABL75826.1| RNA polymerase II largest subunit [Boreoplaca ultrafrigida]
Length = 356
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 132/356 (37%), Positives = 176/356 (49%), Gaps = 113/356 (31%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L+ VC C K+LV S+ + L+ + RR A I+ LCK K +CE
Sbjct: 1 FMTKIKKLLKTVCHNCGKILVDESNSTFAEA-LRYRDPKRRFDA-IWRLCKPKLVCENM- 57
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
+D ++++ K+
Sbjct: 58 -------AVQDEDNIKESKE---------------------------------------- 70
Query: 214 GVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPL---------- 258
K HGGCG QP +RR GL LT WK NE Q +K P+
Sbjct: 71 -----PKHDHGGCGNVQPEVRREGLRLTGTWKAQKGDEENEGQQPEKKPITPQMALNISR 125
Query: 259 ------------------------------------------TGKGVL-LDDLTHKLADI 275
TG+G+ DDLT+KL DI
Sbjct: 126 HISTEDIKKMGSSNDYARPEWMIITVLPAPPPPVRPSISVDGTGQGMRGEDDLTYKLGDI 185
Query: 276 IKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARL 335
I+ N + R E+ G+ HV++E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARL
Sbjct: 186 IRANGNVRRCETEGSPAHVVSEFESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARL 245
Query: 336 KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
KGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 246 KGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNI 301
>gi|123979328|gb|ABM81489.1| RNA polymerase II largest subunit [Ophioparma lapponica]
Length = 981
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 133/356 (37%), Positives = 175/356 (49%), Gaps = 113/356 (31%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L V C K+LV S+P D L+ + RR A I+ LCK K +CE
Sbjct: 1 FMTKIKKLLETVRHNCGKILVDESNPAFADA-LRYRDPKRRFDA-IWRLCKPKLVCETM- 57
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
+D ++++ K+
Sbjct: 58 -------AVQDEDNIKESKE---------------------------------------- 70
Query: 214 GVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPL---------- 258
K HGGCG QP +RR GL LT WK NE Q +K P+
Sbjct: 71 -----PKHDHGGCGNIQPEVRREGLKLTGTWKAQKGDEENEGQQPEKKPITPQMALNIFR 125
Query: 259 ------------------------------------------TGKGVL-LDDLTHKLADI 275
TG+G+ DDLT+KL DI
Sbjct: 126 HISTEEIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDI 185
Query: 276 IKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARL 335
I+ N + R E+ G+ HV++E +LQFHVAT DND+ G P+A+QKSG+P+K+I+ARL
Sbjct: 186 IRANGNVRRCETEGSPAHVVSEFESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARL 245
Query: 336 KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
KGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 246 KGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 301
>gi|159040772|ref|YP_001540024.1| DNA-directed RNA polymerase subunit A' [Caldivirga maquilingensis
IC-167]
gi|157919607|gb|ABW01034.1| DNA-directed RNA polymerase subunit A' [Caldivirga maquilingensis
IC-167]
Length = 889
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 144/391 (36%), Positives = 195/391 (49%), Gaps = 39/391 (9%)
Query: 9 PLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQ 67
PL+ +K++ F +LSPD IR+MSV E + ET E G P GGLMD R GV + +RC+
Sbjct: 14 PLKVIKEISFNVLSPDLIRKMSVME--VTTSETYDEAGNPVKGGLMDRRLGVDEPEARCE 71
Query: 68 TCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLK 127
TC + CPGHFG I+L +PV H FV ILR C C +L +
Sbjct: 72 TCGNDWRRCPGHFGRIELVRPVVHPEFVKPIYDILRATCPNCGRLKL------------- 118
Query: 128 TKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRR 187
T + +R I L K + + K A + CG QP IR
Sbjct: 119 TDEEYKRYSERIKRLKKHWRALSDRLILRVKKKAA--------ARSTCPHCGAPQPKIR- 169
Query: 188 SGLDLTAEWKHVNEDSQEKKI-PLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK- 245
LD ++ +ED + ++ P++ + L + P+ R EW
Sbjct: 170 --LDKPFKFYTESEDGRLTRLDPVSIREWLEKVPDDDLELLGWNPSTAR------PEWAV 221
Query: 246 ----HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
V I L DDLTH L I++ N +L SG+ T I +
Sbjct: 222 LTVLPVPPPQVRPSIQLPSGQTSADDLTHALTTILRYNEKLRNAIESGSPTTSILDLWDS 281
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ +VAT DN++PG +A +S +PLK I RLKGKEGR RG+L GKRV+FSARTVI+P
Sbjct: 282 LQANVATYIDNELPGGIQARHRSKRPLKGIAQRLKGKEGRFRGSLSGKRVEFSARTVISP 341
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
DPNL I++VGVP IA+ +T E VT +N+D
Sbjct: 342 DPNLSINEVGVPIDIAKELTVVEPVTEWNID 372
>gi|206601399|gb|ACI16418.1| RNA polymerase II largest subunit [Thelidium umbilicatum]
Length = 357
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 126/308 (40%), Positives = 170/308 (55%), Gaps = 18/308 (5%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+ S V ++ + ++R I+ L + + +C+
Sbjct: 1 FLGKVKKLLETVCHNCGKIKAVDSEDLRYAVSVRDR---KKRFDLIWRLSQKQLVCQADS 57
Query: 154 EMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTG 212
D EDPN+ + K HGGCG QP IR++GL+L A++K D +E+ +P
Sbjct: 58 PED-----EEDPNAKEKAGKTRHGGCGNAQPAIRKAGLELWAQYKPRKGDDEEETVPEKS 112
Query: 213 KGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQEKKIPLTGKGVLL- 265
+ Q LD EW + I + G G
Sbjct: 113 QIWPAQALQIFQHLTDETLETLGMNLDFARPEWMILQSLPVPPPPVRPSISVDGSGQGQR 172
Query: 266 --DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQK 323
DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DND+ L +A K
Sbjct: 173 GEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATYMDNDIANLDKAQHK 232
Query: 324 SGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFP 383
SG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+P
Sbjct: 233 SGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYP 292
Query: 384 EIVTPFNM 391
E VTPFN+
Sbjct: 293 ETVTPFNI 300
>gi|206601338|gb|ACI16388.1| RNA polymerase II largest subunit [Polyblastia hyperborea]
Length = 359
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 126/309 (40%), Positives = 170/309 (55%), Gaps = 20/309 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR-RQAFIYDLCKGKNICEGG 152
F+ K+L VC C K+ S D+ + R+ R I+ L + +N+C+
Sbjct: 1 FLGNVKKLLETVCHNCGKIKAVESE----DLRYAVSNRDRKKRFELIWRLSQKQNVCQAD 56
Query: 153 DEMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLT 211
D +DPN+ + K HGGCG QP IR++GL+L A++K D +E+ +P
Sbjct: 57 SPED-----EDDPNAKEKGGKIRHGGCGNAQPVIRKTGLELWAQYKPRKSDDEEESVPEK 111
Query: 212 GKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQEKKIPLTGKGVLL 265
+ Q + LD EW + I + G G
Sbjct: 112 SQIWPAQALQVFQHLTDETLDTLGMNLDFARPEWMILQSLPVPPPPVRPSISVDGSGQGS 171
Query: 266 ---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQ 322
DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DND+ L +A
Sbjct: 172 RGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATYMDNDIANLDKAQH 231
Query: 323 KSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTF 382
KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+
Sbjct: 232 KSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTY 291
Query: 383 PEIVTPFNM 391
PE VTPFN+
Sbjct: 292 PETVTPFNI 300
>gi|206601367|gb|ACI16402.1| RNA polymerase II largest subunit [Verrucaria viridula]
Length = 356
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 170/310 (54%), Gaps = 22/310 (7%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+ S + ++ ++R I+ L + +N+C+
Sbjct: 1 FLGKVKKLLETVCHNCGKIKAVDSEDLRYALTVRN---PKKRFELIWRLSQKQNVCQADS 57
Query: 154 EMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTG 212
D EDP + K GHGGCG QP IRRSGL+L A++K D E+ +P
Sbjct: 58 PED-----EEDPMGKEKSGKVGHGGCGNAQPQIRRSGLELWAQYKPRKGDDDEETVP--E 110
Query: 213 KGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQEKKIPLTGKGVL 264
K + + + GL L EW + I + G G
Sbjct: 111 KSQIWPAQALEVFQHLTDETLDTLGLSLDFARPEWMILQSLPVPPPPVRPSISVDGSGQG 170
Query: 265 L---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DND+ L +A
Sbjct: 171 SRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDNDIANLDKAQ 230
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T
Sbjct: 231 HKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLT 290
Query: 382 FPEIVTPFNM 391
+PE VT FN+
Sbjct: 291 YPETVTRFNI 300
>gi|83320450|gb|ABC02852.1| RNA polymerase II largest subunit, partial [Rhizophlyctis rosea]
Length = 1006
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 135/323 (41%), Positives = 178/323 (55%), Gaps = 23/323 (7%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYD 141
HI+LAKPVFH GFVTK K+L C+C C+KL + + R ++ +RR ++
Sbjct: 1 HIELAKPVFHPGFVTKIKKVLECICVSCAKLKIDETMDS-RFARIRNLKDKKRRFNEVWR 59
Query: 142 LCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRS--GLDLTAEWKHV 199
L K K CE + D E+P + K H GCG QP R+ G LT ++K
Sbjct: 60 LAKDKKTCE-----QPSADDDEEPGNSNKKAHKHDGCGARQPEFRKEKEGFRLTMKYKQS 114
Query: 200 --NEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWKHVN-----E 249
+ED E K +L + +I+ GL EW ++
Sbjct: 115 SKDEDKPEVKAETISPERVLTIFRNIS-----DEDIKDMGLSPQFARPEWMMISVLPVPP 169
Query: 250 DSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATL 309
+ + G+ DDLT+ L +I++ N +L GA HVI++ LQ+HVAT
Sbjct: 170 MPVRPAVAVEGQAKGEDDLTYALRNIVETNKKLREALEQGAPLHVISDFELALQYHVATF 229
Query: 310 TDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 369
DND G A KSG+PLK I++RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL IDQ
Sbjct: 230 MDNDGAGANAAAHKSGRPLKTIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQ 289
Query: 370 VGVPRSIAQNMTFPEIVTPFNMD 392
VGVPRSIA+N+TFPE+VT N +
Sbjct: 290 VGVPRSIARNLTFPEVVTKCNFE 312
>gi|226452198|gb|ACO59266.1| RNA polymerase II largest subunit [Catenulostroma abietis]
Length = 363
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 125/309 (40%), Positives = 176/309 (56%), Gaps = 14/309 (4%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+ + + + + + RR +A ++ +CK CE
Sbjct: 4 FITKIKKVLESVCHNCGKIKTDERNNQFAQAI-RLRDPKRRFEA-VHKICKPITTCEPDA 61
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
+ + DP + + K +GHGGCG QP IR+ L L +K D +E K
Sbjct: 62 PAEDDGGFDNDPKA-KLKSKGHGGCGNQQPVIRKEQLRLHGSYKAAKSDEEEGAPAQPEK 120
Query: 214 GVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEWK-----HVNEDSQEKKIPLTGKGVLL 265
+ + + ++ R GL+ EW V + I + G +
Sbjct: 121 VAITPQYALNVFRNISDEDMARLGLNGDYARPEWMVLTVLPVPPPAVRPSISVDGTSQGM 180
Query: 266 ---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQ 322
DDLT+KL+DII+ N+ + R E G+ HV E I +LQ+HVAT DND+ G+P+A+Q
Sbjct: 181 RSEDDLTYKLSDIIRANSNVRRCEQEGSPPHVTDEFIGLLQYHVATYMDNDIAGVPKALQ 240
Query: 323 KSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTF 382
KSG+P+K+I+ARLK KEGR+RGNLMGKRVDFSARTVIT DPNL +DQVGVPRSIA+ +TF
Sbjct: 241 KSGRPVKSIRARLKSKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPRSIARTLTF 300
Query: 383 PEIVTPFNM 391
PE V +N+
Sbjct: 301 PETVNAYNI 309
>gi|47195286|emb|CAF94688.1| unnamed protein product [Tetraodon nigroviridis]
Length = 120
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 92/111 (82%), Positives = 104/111 (93%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
DS PLR +K+VQFGI+SPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 7 GDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERT 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLV 114
RCQTCAGNMTECPGHFGHI+LAKPVFHVGFVTK +K+LRCVCF+CSKLLV
Sbjct: 67 GRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLV 117
>gi|394998769|gb|AFN44303.1| RNA polymerase II largest subunit, partial [Megalospora
tuberculosa]
Length = 355
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 133/355 (37%), Positives = 173/355 (48%), Gaps = 112/355 (31%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+ K K+L VC C K+LV S+P D L+ + RR A ++ LCK K ICE
Sbjct: 1 FLNKIKKLLETVCHNCGKILVDESNPGFVDA-LRMRDPKRRFDA-VWRLCKPKMICETSM 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D +E+S++ K P
Sbjct: 59 PAD-------------------------------------------DENSEKSKEP---- 71
Query: 214 GVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK---------------------------- 245
K HGGCG QP +RR L LT WK
Sbjct: 72 ------KHDHGGCGNIQPEVRREALKLTGTWKAQKGDEENEGQQAEKKPITPQMALNIFR 125
Query: 246 HVNEDSQEK---------------------------KIPLTGKGVLL--DDLTHKLADII 276
H++ D +K I + G G + DDLT+KL DII
Sbjct: 126 HISPDEIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISMDGAGGMRGEDDLTYKLGDII 185
Query: 277 KCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLK 336
+ N + R + G+ HV+ E +LQFHVAT DND+ GLP+A+QKSG+P+K+I+ARLK
Sbjct: 186 RANGNVKRCDLDGSPAHVVQEFENLLQFHVATYMDNDIAGLPQALQKSGRPVKSIRARLK 245
Query: 337 GKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
GKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 246 GKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 300
>gi|119643768|gb|ABL85587.1| RNA polymerase II largest subunit [Phaeophyscia orbicularis]
Length = 1007
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 133/308 (43%), Positives = 164/308 (53%), Gaps = 27/308 (8%)
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKIL-RCVCFYCSKLLVSPSHPKVRDVVLKTKGQSR 133
ECPGHFGHI+LA PVF + ++ L RC L S +D + + R
Sbjct: 1 ECPGHFGHIELAVPVFRIASXPRSRSCLKRCATTVAKSKLTKSSTIGFKDALRVRDPKKR 60
Query: 134 RRQAFIYDLCKGKNICE-GGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDL 192
Q I+ LCK K ICE + D KD A+ P + GHGGCG QP +RR GL L
Sbjct: 61 FDQ--IWRLCKPKLICETSSNPDDEEKDAAKSPT--KAAPTGHGGCGNVQPEVRRDGLKL 116
Query: 193 TAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEW 244
WK NE Q +K P+T + LN Q +I+ GL EW
Sbjct: 117 MGTWKPQKGDDENEGQQAEKRPIT-PAMALNVFQHMS-----NEDIKMMGLSNDYARPEW 170
Query: 245 KHVNEDSQEKKIPL------TGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ +G G DDLT+KL DII+ N + R E+ G H+I E
Sbjct: 171 MIITVLPVPPPPVRPSIRMDSGDGPTGEDDLTYKLGDIIRANGNVRRGETEGTPAHIIEE 230
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
+LQFHVAT ND G P+A+QKSG+P+KAI+ARLKGKEGR+RGNLMGKRVDFSART
Sbjct: 231 FETLLQFHVATYMSNDTAGQPQALQKSGRPVKAIRARLKGKEGRVRGNLMGKRVDFSART 290
Query: 358 VITPDPNL 365
VIT DPNL
Sbjct: 291 VITGDPNL 298
>gi|157741512|gb|ABV69461.1| RNA polymerase II largest subunit, partial [Placidium
acarosporoides]
Length = 357
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 129/318 (40%), Positives = 175/318 (55%), Gaps = 36/318 (11%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHP-----KVRDVVLKTKGQSRRRQAFIYDLCKGKN 147
GF+ K K+L VC C K+ S VRD ++R I+ L + +N
Sbjct: 1 GFLGKVKKLLETVCHNCGKIKAVDSEELRYALSVRDC--------KKRFELIWRLSQKQN 52
Query: 148 ICEGGDEMDINKDGAEDPNSLQNKKQG---HGGCGRYQPNIRRSGLDLTAEWKHVNEDSQ 204
+C+ D +DP + +K G HGGCG QP IR++GL+L A++K D +
Sbjct: 53 VCQADSPND-----EDDP--IAKEKSGKIRHGGCGNAQPAIRKTGLELWAQYKPRKGDDE 105
Query: 205 EKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQEKKI 256
E+ +P K + + + GL+L EW + I
Sbjct: 106 EEAVP--EKSQIWPAQALQVFQHLTDETLETLGLNLDFARPEWMILQSLPVPPPPVRPSI 163
Query: 257 PLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDND 313
+ G G DDLT KL DII+ N LIR + GA H+ E + +LQ+HVAT DND
Sbjct: 164 SVDGSGQGQRGEDDLTFKLGDIIRANQNLIRTNAEGAPDHIAKELLALLQYHVATYMDND 223
Query: 314 MPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVP 373
+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVP
Sbjct: 224 ITNLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVP 283
Query: 374 RSIAQNMTFPEIVTPFNM 391
RSIA+ +T+PE VT FN+
Sbjct: 284 RSIARTLTYPETVTRFNI 301
>gi|226876193|gb|ACO89417.1| RNA polymerase II largest subunit, partial [Fonsecaea monophora]
Length = 983
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 173/313 (55%), Gaps = 26/313 (8%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+ K KIL VC C K+ + + ++ + +RR ++ L K +N+CE
Sbjct: 1 GFMNKVKKILETVCHNCGKIKALDTEEFRHAISIRDR---KRRFEAVWRLSKPRNVCEA- 56
Query: 153 DEMDINKDGAEDPNS-LQNKKQ-GHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPL 210
D +DP+ L+ Q HGGCG QP+IRR+GL L A WK + E P
Sbjct: 57 -------DPIDDPDQPLKGPPQPKHGGCGNAQPDIRRTGLQLWATWKPRKGEDDEDVTP- 108
Query: 211 TGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVN-----EDSQEKKIPLTGKG 262
K + + + + GL L EW ++ I + G G
Sbjct: 109 -DKKRIFPQDALNTFRTLTDETLELMGLSLDYARPEWMILSALPVPPPPVRPSISVDGSG 167
Query: 263 VLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPR 319
DDLT KL DII+ N ++R E G H+ + +LQ+H+AT DN++ GL +
Sbjct: 168 QGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKIDLCDLLQYHIATYMDNEIAGLDK 227
Query: 320 AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 379
A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 AQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 287
Query: 380 MTFPEIVTPFNMD 392
+T+PE VTPF +D
Sbjct: 288 LTYPERVTPFTID 300
>gi|157741494|gb|ABV69452.1| RNA polymerase II largest subunit, partial [Endocarpon adscendens]
Length = 999
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 129/319 (40%), Positives = 173/319 (54%), Gaps = 18/319 (5%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S + ++ S++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSEDLRYALTVRN---SKKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCG-RYQPNIRRSGLDLTAEWKHVNE 201
+ NIC+ N + EDP + + + G QP IRRSGL+L A++K
Sbjct: 58 SQKLNICQAD-----NPEDEEDPAAKERGGKVGHGGCGNAQPQIRRSGLELWAQYKPRKG 112
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQEKK 255
D E+ +P + + + LD EW +
Sbjct: 113 DDDEETVPEESQIWPAQALEVFQHLTDETLDTLGLNLDFARPEWMILQSLPVPPPPVRPS 172
Query: 256 IPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDN 312
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DN
Sbjct: 173 ISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDN 232
Query: 313 DMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGV 372
D+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGV
Sbjct: 233 DIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGV 292
Query: 373 PRSIAQNMTFPEIVTPFNM 391
PRSIA+ +T+PE VT FN+
Sbjct: 293 PRSIARTLTYPETVTRFNI 311
>gi|119643929|gb|ABL85595.1| RNA polymerase II largest subunit [Xanthoria polycarpa]
Length = 1020
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 121/274 (44%), Positives = 163/274 (59%), Gaps = 26/274 (9%)
Query: 133 RRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDL 192
+RR I+ K K ICE D ++P ++++ HGGCG QP IRR L L
Sbjct: 58 KRRFELIWRASKKKLICETSMPAD-----DDNPEKAKSQRHDHGGCGNIQPEIRREALKL 112
Query: 193 TAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---LTAEW 244
T WK +E Q +K P+T + + LN + +I+ GL EW
Sbjct: 113 TGTWKAQKGDDEHEGQQAEKKPITPQ-MALNIFRNIS-----TDDIKDMGLSNDYARPEW 166
Query: 245 KHVNEDSQEK-----KIPLTGKGVLL--DDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
+ I + G + DDLT+KL DII+ N + R + G+ H+I E
Sbjct: 167 MIITVLPVPPPPVRPSISMDGGAGMRGEDDLTYKLGDIIRANGNVKRCDIEGSPQHLIQE 226
Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
+LQFHVAT DN++ GLP+A+QKSG+P+K+I+ARLKGKEGR+RGNLMGKRVDFSART
Sbjct: 227 FESLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSART 286
Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
VIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 287 VITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 320
>gi|206601387|gb|ACI16412.1| RNA polymerase II largest subunit [Polyblastia fuscoargillacea]
Length = 358
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 169/309 (54%), Gaps = 20/309 (6%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR-RQAFIYDLCKGKNICEGG 152
F+ K K+L VC C K+ S D+ + R+ R I+ L + +N+C+
Sbjct: 1 FLGKVKKLLETVCHNCGKIKAVESE----DLRYAVSNRDRKKRFELIWRLSQKQNVCQAD 56
Query: 153 DEMDINKDGAEDPNSLQNK-KQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLT 211
D +DPN+ + K HGGCG QP IR++GL+L A++K D +E+ +P
Sbjct: 57 SPED-----EDDPNAKEKGGKIRHGGCGNAQPVIRKTGLELWAQYKPRKGDDEEETVPEK 111
Query: 212 GKGVLLNKKQGHGGCGRYQPNIRRSGLDLT-AEWKHVNE-----DSQEKKIPLTGKGVLL 265
+ Q LD EW + I + G G
Sbjct: 112 SQIWPAQALQVFQHLTDETLETLGMNLDFARPEWMILQSLPVPPPPVRPSISVDGSGQGS 171
Query: 266 ---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQ 322
DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DND+ L +A
Sbjct: 172 RGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATYMDNDIANLDKAQH 231
Query: 323 KSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTF 382
KSG+P+K+I+ARLKGKEGR R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+
Sbjct: 232 KSGRPIKSIRARLKGKEGRXRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTY 291
Query: 383 PEIVTPFNM 391
PE VTPFN+
Sbjct: 292 PETVTPFNI 300
>gi|226876243|gb|ACO89442.1| RNA polymerase II largest subunit, partial [Anthracothecium nanum]
Length = 319
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 118/277 (42%), Positives = 169/277 (61%), Gaps = 19/277 (6%)
Query: 129 KGQSRRRQAF--IYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIR 186
K + +RQ F I+ L + + +CE D+++DG D + KK HGGCG QP+IR
Sbjct: 11 KASTSKRQRFEKIWQLSRKQRVCEA----DVSEDG--DQEFSKEKKPRHGGCGNAQPDIR 64
Query: 187 RSGLDLTAEWKHV----NEDSQEKKIPLTGKGVL----LNKKQGHGGCGRYQPNIRRSGL 238
SGL+L WK NE +Q + PL+ + L L + G N R +
Sbjct: 65 MSGLNLMTSWKPTKDEDNEPTQAETRPLSPQTALNILRLMSDEEMEDLGLDVRNARPEYM 124
Query: 239 DLTAEWKHVNEDSQEKKIPLTGKGVLL-DDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
L+ + +G+G DDLT KL DII+ N + R + G+ H++ E
Sbjct: 125 ILSCLLVPPPPVRPSISMDGSGQGTRSEDDLTFKLGDIIRANQNVRRVQQEGSPEHILNE 184
Query: 298 NIKMLQFHVATLTDNDMPGLP--RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 355
++++LQ+HVAT +ND+ G+ +A K+G+P+K+I+ARLKGK+GR+R NLMGKRVDFSA
Sbjct: 185 HVQLLQWHVATYMNNDIAGMDGLKAQHKTGRPIKSIRARLKGKDGRLRQNLMGKRVDFSA 244
Query: 356 RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
RTVIT DPNL +D+VGVPRSIA+ +T+PE+VTPFN+D
Sbjct: 245 RTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPFNVD 281
>gi|291170446|gb|ADD82432.1| RNA polymerase II largest subunit [Capnodiales sp. A73]
Length = 344
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 174/313 (55%), Gaps = 22/313 (7%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F++K KIL VC C KLL +P V + + RR +A ++ LC+ K CE
Sbjct: 1 FISKVXKILEAVCHXCGKLLEDDRNPAFAQAV-RLRDPKRRFEA-VHRLCRMKKTCESDX 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWK-HVNED------SQEK 206
D +DP + + K +GHGGCG QP IR+ L L WK NED + EK
Sbjct: 59 PADDXDGFGDDPKA-KLKSKGHGGCGNVQPEIRKEQLRLWGTWKVAXNEDDGDEKNATEK 117
Query: 207 KIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGK 261
++ + + + + R N+ + EW V + I + G
Sbjct: 118 RLITPHDSLTVFRNISNDDLNRLGLNVDYA----XPEWMILTVLPVPPPAVRPSISVDGT 173
Query: 262 GVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLP 318
+ DDLT+KL+DII+ N+ + R E G+ HV+ E + LQFHVAT ND+ +P
Sbjct: 174 SQGMRSEDDLTYKLSDIIRANSNVRRCEQEGSPQHVVXEFXQXLQFHVATYMXNDIASVP 233
Query: 319 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 378
+A QKSG+P+KA +AR K KEGR+RGNLMGKRVDF ARTVIT DPNL +DQVGVPRSIA+
Sbjct: 234 KAXQKSGRPVKAXRARXKSKEGRLRGNLMGKRVDFXARTVITGDPNLDLDQVGVPRSIAR 293
Query: 379 NMTFPEIVTPFNM 391
+TFPE V + +
Sbjct: 294 TLTFPETVNAYXI 306
>gi|157741500|gb|ABV69455.1| RNA polymerase II largest subunit, partial [Endocarpon pusillum]
Length = 999
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 130/321 (40%), Positives = 175/321 (54%), Gaps = 22/321 (6%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDL 142
I LA PV+H GF+ K K+L VC C K+ S + ++ ++R I+ L
Sbjct: 1 IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDSEDLRYALTVRN---PKKRFELIWRL 57
Query: 143 CKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCG-RYQPNIRRSGLDLTAEWKHVNE 201
+ +NIC+ D EDP + + + G QP IRRSGL+L A++K
Sbjct: 58 SQKQNICQADSPED-----EEDPAAKERGGKVGHGGCGNAQPQIRRSGLELWAQYKPRKG 112
Query: 202 DSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQE 253
D E+ +P K + + + GL+L EW +
Sbjct: 113 DDDEETVP--EKSQIWPAQALEVFQHLTDETLETLGLNLDFARPEWMILQSLPVPPPPVR 170
Query: 254 KKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
I + G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT
Sbjct: 171 PSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYM 230
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
DND+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+V
Sbjct: 231 DNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEV 290
Query: 371 GVPRSIAQNMTFPEIVTPFNM 391
GVPRSIA+ +T+PE VT FN+
Sbjct: 291 GVPRSIARTLTYPETVTRFNI 311
>gi|157741526|gb|ABV69468.1| RNA polymerase II largest subunit, partial [Placidium sp. AFTOL
2237]
Length = 978
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 129/318 (40%), Positives = 175/318 (55%), Gaps = 36/318 (11%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHP-----KVRDVVLKTKGQSRRRQAFIYDLCKGKN 147
GF+ K K+L VC C K+ S VRD ++R I+ L + +N
Sbjct: 2 GFLGKVKKLLETVCHNCGKIKAVDSEDLRYARSVRD--------RKKRFELIWRLSQKQN 53
Query: 148 ICEGGDEMDINKDGAEDPNSLQNKKQG---HGGCGRYQPNIRRSGLDLTAEWKHVNEDSQ 204
+C+ + D +DP + +K G HGGCG QP IR+SGL+L A++K D +
Sbjct: 54 VCQAD-----SPDDEDDP--IAKEKSGKVRHGGCGNAQPAIRKSGLELWAQYKPRKSDDE 106
Query: 205 EKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVNE-----DSQEKKI 256
E+ + + K + + + GL+L EW + I
Sbjct: 107 EETV--SEKSQIWPAQALQVFQHLTDETLETLGLNLDFARPEWMILQSLPVPPPPVRPSI 164
Query: 257 PLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDND 313
+ G G DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DND
Sbjct: 165 SVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDND 224
Query: 314 MPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVP 373
+ L +A KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVP
Sbjct: 225 IANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVP 284
Query: 374 RSIAQNMTFPEIVTPFNM 391
RSIA+ +T+PE VT FN+
Sbjct: 285 RSIARTLTYPETVTRFNI 302
>gi|13274164|emb|CAC33861.1| RNA polymerase II largest subunit [Pleistophora hippoglossoideos]
Length = 1093
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 135/357 (37%), Positives = 181/357 (50%), Gaps = 79/357 (22%)
Query: 81 GHIDLAKPVFHVGFVTKTIKILRCVCFYCSKL---------------------------- 112
GH++L +PVFHVG++ K K+L VCFYCS++
Sbjct: 1 GHMELTRPVFHVGYMNKIKKLLEIVCFYCSRIKSFDMFKIVGVNDVGGVNGVNDVGGVNG 60
Query: 113 ----------LVSPSHPKVRDVVLKTKGQSRRRQA---FIYDLCKGKNICEGGDEMDINK 159
+ K V + K + R + F ++LCKGK +C
Sbjct: 61 VNVNGVNDVNNAVDKNDKNNAVDVNDKNTATRTKKGLNFFWNLCKGKTMCIH-------- 112
Query: 160 DGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV-LLN 218
C QP I+R GL L A K ED+ E K+ L G+ V +
Sbjct: 113 ------------------CQSKQPLIKRDGLSLIAFIK--GEDNSEGKVILNGEKVHTIF 152
Query: 219 KKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLDDLTHKLA 273
K+ C + R S EW +V+ + + L G DDLTHKLA
Sbjct: 153 KRICEDECLVLGFDGRFS----RPEWMVISVLNVSPPAVRPSVVLEGMLRGEDDLTHKLA 208
Query: 274 DIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKA 333
DI+K N L + E GA H+I + +LQ+HVATL DN++ GLP+++QKSG+PLK I A
Sbjct: 209 DIVKANTNLAKYEREGAPGHIIRDYESLLQYHVATLMDNNIAGLPQSLQKSGRPLKNISA 268
Query: 334 RLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN 390
RLKGKEGR+RGNLMGKRVDFSAR+VI+PD N+ + +VGVP +IA+ TFPE VT FN
Sbjct: 269 RLKGKEGRVRGNLMGKRVDFSARSVISPDSNISLVEVGVPEAIAKIHTFPERVTGFN 325
>gi|57472114|gb|AAW51135.1| RNA polymerase II largest subunit [Calostoma cinnabarinum]
Length = 994
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/312 (40%), Positives = 169/312 (54%), Gaps = 16/312 (5%)
Query: 90 FHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNIC 149
FH GF+ K KIL C+C C KL S P D + + + + R A ++ CK K IC
Sbjct: 1 FHPGFIVKVKKILECICVNCGKLKADISDPNFADKIRHVRDR-KARMAVVWSHCKSKMIC 59
Query: 150 EGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIP 209
E + + K+GHGGCG QP IR+ GL L ++K +D ++ K
Sbjct: 60 ETDEPR-----EEGAEGEPEEPKKGHGGCGHQQPLIRKEGLKLFVQYKRPKDDDEDIKSL 114
Query: 210 LTGKGVLLNKKQGHGGCGRYQPNIRRSGL-DLTA--EWKHVNEDSQEK-----KIPLTGK 261
K + + ++ GL D A EW + I + G
Sbjct: 115 QPDKRLFTPSEVYTTFKKMSDSDLHLLGLSDEYARPEWMIITVLPVPPPPVRPSIAVDGG 174
Query: 262 GVLL-DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRA 320
+ DDLT+KL DIIK + + R E GA HVI E ++LQFH AT DND+ G+P+A
Sbjct: 175 AMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVITEFEQLLQFHXATYMDNDIAGIPQA 234
Query: 321 MQKSGKPLKAIKAR-LKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 379
+ K ++ R LKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVP S+A N
Sbjct: 235 LAKIRSSCESYPVRGLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPISVAMN 294
Query: 380 MTFPEIVTPFNM 391
+T+PE VTPFN+
Sbjct: 295 LTYPERVTPFNI 306
>gi|123979344|gb|ABM81497.1| RNA polymerase II largest subunit [Rhizocarpon superficiale]
Length = 991
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 134/356 (37%), Positives = 175/356 (49%), Gaps = 113/356 (31%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L V C K+LV + P + L+ + RR A I+ +CK K ICE
Sbjct: 1 FMTKIKKLLETVYHNCGKILVDENVPAFAEA-LRYRDPKRRFDA-IWRICKPKMICEST- 57
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
P NED+ EK +T
Sbjct: 58 ----------------------------MPQ---------------NEDNAEKAKEIT-- 72
Query: 214 GVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPL---------- 258
HGGCG QP +RR GL LT WK N+ Q +K P+
Sbjct: 73 -------HDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENDGQQPEKKPITPQMALNIFR 125
Query: 259 ------------------------------------------TGKGVL-LDDLTHKLADI 275
TG+G+ DDLT+KL DI
Sbjct: 126 NISTDEIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDI 185
Query: 276 IKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARL 335
I+ N + R E+ G+ HV++E ++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARL
Sbjct: 186 IRANGNVRRCETEGSPAHVVSEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARL 245
Query: 336 KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
KGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 246 KGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNI 301
>gi|119514086|gb|ABL75816.1| RNA polymerase II largest subunit [Placynthiella uliginosa]
Length = 355
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 133/356 (37%), Positives = 175/356 (49%), Gaps = 113/356 (31%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+LV S+ + + + +SR + I+ LCK K ICE
Sbjct: 1 FMTKIKKLLETVCHNCGKILVDESNSDFANALRVREPKSRFEK--IWKLCKPKMICESTV 58
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
D ++D ++ K P
Sbjct: 59 LGD-------------------------------------------DDDIEKSKEP---- 71
Query: 214 GVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKHV-----NEDSQEKKIPL---------- 258
K HGGCG QP +RR GL LT EWK N+ Q +K P+
Sbjct: 72 ------KHDHGGCGNIQPTVRREGLRLTGEWKAQKGDDGNDPQQPEKKPITPQMALNIFR 125
Query: 259 ------------------------------------------TGKGVL-LDDLTHKLADI 275
TG G+ DDLT KL DI
Sbjct: 126 NISSEDIRKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGTGTGMRGEDDLTFKLGDI 185
Query: 276 IKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARL 335
I+ N + R E+ G+ H+++E ++LQFHVAT DND+ G P+A+QKSG+P+K+I+ARL
Sbjct: 186 IRANGNVRRCETEGSPAHIVSEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARL 245
Query: 336 KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
KGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +TFPE VTP+N+
Sbjct: 246 KGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTFPETVTPYNI 301
>gi|157741568|gb|ABV69489.1| RNA polymerase II largest subunit, partial [Bagliettoa sp. AFTOL
2229]
Length = 364
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/312 (40%), Positives = 174/312 (55%), Gaps = 22/312 (7%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+ K K+L VC C K+ S + ++ + ++R I+ L + +N+C+
Sbjct: 1 GFLGKVKKLLETVCHNCGKIKALDSEELRYALSVRDR---KKRFELIWRLSQKQNVCQAD 57
Query: 153 DEMDINKDGAEDPNSLQN-KKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLT 211
D +DPN+ K HGGCG QP IR++GL+L A++K + +E +P
Sbjct: 58 GPED-----EDDPNARDTITKAKHGGCGNAQPAIRKTGLELWAQYKPRKGEDEEGAVP-- 110
Query: 212 GKGVLLNKKQGHGGCGRYQPNIRRSGLDLT---AEWKHVNE-----DSQEKKIPLTGKGV 263
K + + + GL+L EW + I + G G
Sbjct: 111 EKSQIWPAQALQVFQHLTDETLETLGLNLDFARPEWMILQSLPVPPPPVRPSISVDGSGQ 170
Query: 264 LL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRA 320
DDLT KL DII+ N LIR + GA H+ E +LQ+HVAT DND+ L +A
Sbjct: 171 GQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDNDIANLDKA 230
Query: 321 MQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNM 380
KSG+P+K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +
Sbjct: 231 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTL 290
Query: 381 TFPEIVTPFNMD 392
T+PE VT +NM+
Sbjct: 291 TYPETVTRYNME 302
>gi|119643566|gb|ABL85577.1| RNA polymerase II largest subunit [Hypotrachyna degelii]
Length = 925
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 145/237 (61%), Gaps = 25/237 (10%)
Query: 172 KQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGC 226
K HGGCG QP +RR GL LT WK NE Q +K P+T + L
Sbjct: 1 KHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPEKKPITPQMAL--------NI 52
Query: 227 GRY--QPNIRRSGLD---LTAEWKHVNEDSQEKKIPLTGKGVL-------LDDLTHKLAD 274
R+ +I+R GL EW + V DDLT+KL D
Sbjct: 53 FRHISTEDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLTYKLGD 112
Query: 275 IIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKAR 334
II+ N + R E+ G+ HV+ E ++LQFHVAT DND+ G P+A+QKSG+P+K+I+AR
Sbjct: 113 IIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRAR 172
Query: 335 LKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
LKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 173 LKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 229
>gi|119643745|gb|ABL85586.1| RNA polymerase II largest subunit [Buellia stillingiana]
Length = 1002
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 125/277 (45%), Positives = 157/277 (56%), Gaps = 32/277 (11%)
Query: 133 RRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQ-NKKQGHGGCGRYQPNIRRSGLD 191
+RR I+ LCK K ICE D ED Q + GHGGCG QP +R+ GL
Sbjct: 58 KRRFDTIWRLCKPKMICETTIPQD------EDSKDTQKDAGPGHGGCGNIQPEVRKDGLK 111
Query: 192 LTAEWK-----HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY--QPNIRRSGLD---LT 241
L WK NE Q +K P+T + L R+ + +IR GL
Sbjct: 112 LIGTWKAQKGDEENEAQQPEKKPITPQMAL--------NIFRHMSKEDIRNVGLSNDYAR 163
Query: 242 AEWKHVNEDSQEKKIPL------TGKGVL-LDDLTHKLADIIKCNNELIRNESSGAATHV 294
EW + +G G DDLT+KL DII+ N + R E G H+
Sbjct: 164 PEWMIITVLPVPPPPVRPSIRTDSGDGPSGEDDLTYKLGDIIRANGNVRRGEQEGTPAHI 223
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
+ E +LQFHVAT ND G P A+QKSG+P+KAI++RLKGKEGR+RGNLMGKRVDFS
Sbjct: 224 VEEFEGLLQFHVATYMINDTAGQPLALQKSGRPVKAIRSRLKGKEGRVRGNLMGKRVDFS 283
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
ARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 284 ARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 320
>gi|394998797|gb|AFN44317.1| RNA polymerase II largest subunit, partial [Physcia dubia]
Length = 355
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 169/355 (47%), Gaps = 112/355 (31%)
Query: 94 FVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGD 153
F+TK K+L VC C K+ V S+ +D L+ + RR A I+ LCK K ICE
Sbjct: 1 FITKIXKLLETVCXNCGKIKVDESNVAFKDA-LRMRDPKRRFDA-IWRLCKPKMICE--- 55
Query: 154 EMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGK 213
++A N+D ++ +
Sbjct: 56 --------------------------------------MSATQDEDNKDPAKEAL----- 72
Query: 214 GVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLL--- 265
GHGGCG QP +R+ GL L WK +E Q +K P+T K L
Sbjct: 73 -------SGHGGCGNIQPEVRKDGLKLMGTWKPQKGDDESEGQQAEKKPITPKMALAVFQ 125
Query: 266 -------------------------------------------------DDLTHKLADII 276
DDLT+KL DII
Sbjct: 126 EISTDDIKKLGLSNDYARPEWMIITVLPVPPPPVRPSIKVDGGDGPTGEDDLTYKLGDII 185
Query: 277 KCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLK 336
+ N + R E+ G H+I E +LQFHVAT ND G P+A+QKSG+P+KAI+ARLK
Sbjct: 186 RANGNVRRGETEGTPAHIIEEFETLLQFHVATYMSNDTAGQPQALQKSGRPVKAIRARLK 245
Query: 337 GKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
GKEGR+RGNLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+ +T+PE VTP+N+
Sbjct: 246 GKEGRVRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNI 300
>gi|134147421|gb|ABO63964.1| RNA polymerase II largest subunit [Pleistophora mulleri]
Length = 1063
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 135/361 (37%), Positives = 183/361 (50%), Gaps = 84/361 (23%)
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKL---------------------------LV 114
H++L +PVFHVG++ K K+L VCFYCS++ +
Sbjct: 1 HMELTRPVFHVGYMNKIKKLLEIVCFYCSRIKSFDMFKIVGVNVNGVNDVNDVGGVNGVN 60
Query: 115 SPSHPKVRDVVLK-------------------TKGQSRRRQAFIYDLCKGKNICEGGDEM 155
V D V K T ++++ F ++LCKGK +C
Sbjct: 61 VSGVNDVNDAVDKNDKNNAVDKNNAVDVNDKNTATRTKKGLNFFWNLCKGKTMCIH---- 116
Query: 156 DINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV 215
C QP I+R GL L A K ED+ E K+ L G+ V
Sbjct: 117 ----------------------CQSKQPLIKRDGLSLIAFIK--GEDNSEGKVILNGEKV 152
Query: 216 -LLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLDDLT 269
+ K+ C + R S EW +V+ + + L G DDLT
Sbjct: 153 HTIFKRICEDECLVLGFDGRFS----RPEWMVISVLNVSPPAVRPSVVLEGMLRGEDDLT 208
Query: 270 HKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLK 329
HKLADI+K N L + E GA H+I + +LQ+HVATL DN++ GLP+++QKSG+PLK
Sbjct: 209 HKLADIVKANTNLAKYEREGAPGHIIRDYESLLQYHVATLMDNNIAGLPQSLQKSGRPLK 268
Query: 330 AIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPF 389
+I ARLKGKEGR+RGNLMGKRVDFSAR+VI+PD N+ + +VGVP +IA+ TFPE VT F
Sbjct: 269 SISARLKGKEGRVRGNLMGKRVDFSARSVISPDSNISLVEVGVPEAIAKIHTFPERVTGF 328
Query: 390 N 390
N
Sbjct: 329 N 329
>gi|226876172|gb|ACO89407.1| RNA polymerase II largest subunit, partial [Cladophialophora
minourae]
Length = 983
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 172/313 (54%), Gaps = 26/313 (8%)
Query: 93 GFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGG 152
GF+ K KIL VC C K+ + + ++ + +RR ++ L K +N+CE
Sbjct: 1 GFMNKVKKILETVCHNCGKIKALDTEEFRHAISIRDR---KRRFDAVWRLSKPRNVCEA- 56
Query: 153 DEMDINKDGAEDPNS-LQNKKQ-GHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPL 210
D EDP+ L+ Q HGGCG QP+IRR+GL L A WK + E P
Sbjct: 57 -------DPIEDPDQPLKGPPQPKHGGCGNAQPDIRRTGLQLWATWKPRKGEEDEDVTP- 108
Query: 211 TGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWKHVNE-----DSQEKKIPLTGKG 262
K + + + + GL L EW ++ I + G G
Sbjct: 109 -DKKRIFPQDALNTFRTLSDETLDMMGLSLDYARPEWMILSALPVPPPPVRPSISVDGSG 167
Query: 263 VLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPR 319
DDLT KL DII+ N ++R E G H+ + +LQ+H+AT DN++ GL +
Sbjct: 168 QGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDNEIAGLDK 227
Query: 320 AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 379
A KSG+P+K+I+ARLKGKE R+R NLMGKRVDFSARTVIT DPNL +D+VGVPRSIA+
Sbjct: 228 AQHKSGRPIKSIRARLKGKENRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 287
Query: 380 MTFPEIVTPFNMD 392
+T+PE VTPF +D
Sbjct: 288 LTYPERVTPFTID 300
>gi|291419534|gb|ADE05280.1| RNA polymerase II largest subunit [Dendrographa leucophaea f.
minor]
Length = 379
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 179/326 (54%), Gaps = 29/326 (8%)
Query: 83 IDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR-RQAF--I 139
+ LA PV+H GF+ K KIL VC C K+ V+D Q+R R F +
Sbjct: 2 VKLAVPVYHYGFMNKVKKILETVCHSCGKI------KAVQDEEFFKATQTRSPRDRFERV 55
Query: 140 YDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQ--GHGGCGRYQPNIRRSGLDLTAEWK 197
+ L K +CE K+ A+ P ++++ HGGCG QP I+++GL L +
Sbjct: 56 HALSSAKLVCEAD-----PKEDADAPPKTRDQQNVIKHGGCGNVQPKIKKAGLQLWGTLE 110
Query: 198 HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWK-----HVNE 249
+ + + P + + H + +++ GL+ EW V
Sbjct: 111 ARKGEDDDDQEPTNKR--IFAADALHIFSLISEEALQQMGLNADYARPEWMILQSLPVPP 168
Query: 250 DSQEKKIPLTGKGVLL---DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHV 306
+ I + G G DDLT K+ DI++ N ++R E G H+ + +LQ+H+
Sbjct: 169 PAVRPSISVDGSGQGARGEDDLTFKIGDIVRANQAVVRTEVDGTPDHIKIDLWDLLQYHI 228
Query: 307 ATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLR 366
AT DND+ GL RA KSG+ +K+I+ARLKGKEGR+R NLMGKRVDFSARTVIT DPNL
Sbjct: 229 ATYMDNDIAGLDRAQHKSGRAIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLS 288
Query: 367 IDQVGVPRSIAQNMTFPEIVTPFNMD 392
+D+VGVPRSIA+ +TFPE VTPFN+D
Sbjct: 289 LDEVGVPRSIARTLTFPEKVTPFNVD 314
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,576,517,178
Number of Sequences: 23463169
Number of extensions: 294368325
Number of successful extensions: 570220
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 12416
Number of HSP's successfully gapped in prelim test: 258
Number of HSP's that attempted gapping in prelim test: 536597
Number of HSP's gapped (non-prelim): 21499
length of query: 392
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 248
effective length of database: 8,980,499,031
effective search space: 2227163759688
effective search space used: 2227163759688
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)