BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3023
         (392 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1 OS=Drosophila
           melanogaster GN=RpII215 PE=3 SV=4
          Length = 1887

 Score =  582 bits (1500), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 284/392 (72%), Positives = 327/392 (83%), Gaps = 7/392 (1%)

Query: 4   ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
            DSKAPLR VK+VQFGILSPDEIRRMSVTEGG++F ETMEGGRPKLGGLMDPRQGVIDR+
Sbjct: 5   TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64

Query: 64  SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
           SRCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK+++
Sbjct: 65  SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124

Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQ 182
           +V+K++GQ R+R A++YDLCKGK ICEGG++MD+ K+  + DP    NKK GHGGCG YQ
Sbjct: 125 IVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDP----NKKPGHGGCGHYQ 180

Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPNIRRSGLD-L 240
           P+IRR+GLDLTAEWKH NEDSQEKKI ++ + V  + K      C     + + +  D +
Sbjct: 181 PSIRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWM 240

Query: 241 TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK 300
                 V   +    + + G     DDLTHKL+DIIK NNEL +NE+SGAA HVI ENIK
Sbjct: 241 IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIK 300

Query: 301 MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
           MLQFHVATL DNDMPG+PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 301 MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360

Query: 361 PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
           PDPNLRIDQVGVPRSIAQN+TFPE+VTPFN+D
Sbjct: 361 PDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 392


>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus
           GN=Polr2a PE=1 SV=3
          Length = 1970

 Score =  546 bits (1407), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)

Query: 5   DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
           DS  PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+ 
Sbjct: 10  DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69

Query: 65  RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
           RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV  ++PK++D+
Sbjct: 70  RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129

Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
           + K+KGQ ++R   +YDLCKGKNICEGG+EMD NK G E P   ++  K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188

Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
           P IRRSGL+L AEWKHVNEDSQEKKI L+ + V  + K+     C     +P   R    
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244

Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
              EW  V        S    + + G     DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302

Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
           IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362

Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
           ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400


>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens
           GN=POLR2A PE=1 SV=2
          Length = 1970

 Score =  546 bits (1406), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 268/398 (67%), Positives = 318/398 (79%), Gaps = 17/398 (4%)

Query: 5   DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
           DS  PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+ 
Sbjct: 10  DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69

Query: 65  RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
           RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV  ++PK++D+
Sbjct: 70  RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129

Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
           + K+KGQ ++R   +YDLCKGKNICEGG+EMD NK G E P   ++  K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188

Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRY--QPNIRRSGLD 239
           P IRRSGL+L AEWKHVNEDSQEKKI L+ + V  + K+     C     +P   R    
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYAR---- 244

Query: 240 LTAEWKHVN-----EDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
              EW  V        S    + + G     DDLTHKLADI+K NN+L RNE +GAA HV
Sbjct: 245 --PEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302

Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
           IAE++K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFS
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362

Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
           ARTVITPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400


>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
           briggsae GN=rpb-1 PE=3 SV=2
          Length = 1853

 Score =  460 bits (1183), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/399 (58%), Positives = 291/399 (72%), Gaps = 20/399 (5%)

Query: 4   ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
            D +APLR V +VQFGIL P+EI+RMSV    ++FPE  E G+PK+GGLMDPRQGVIDR 
Sbjct: 6   VDFQAPLRTVCRVQFGILGPEEIKRMSVAH--VEFPEVYENGKPKMGGLMDPRQGVIDRR 63

Query: 64  SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
            RC TCAGN+T+CPGHFGH++LAKPVFH+GF+TK++KILRCVCFYC +LL+  ++P+V D
Sbjct: 64  GRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLIDKTNPRVMD 123

Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEM-DINKDGAEDPNSLQNKKQGHGGCGRYQ 182
           ++ KT G  ++R A IYDLCK K++CEG  E  D   D  +DP  +   K+   GCGRYQ
Sbjct: 124 ILKKTSGNPKKRLALIYDLCKSKSVCEGAAEKEDGLPDDMDDP--MNEGKKVPAGCGRYQ 181

Query: 183 PNIRRSGLDLTAEW-KHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD-- 239
           P+ RR G+D+ AEW K+VNED+QE+KI LT + VL   KQ          +I   G+D  
Sbjct: 182 PSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFKQ------ITDEDILVIGMDPQ 235

Query: 240 -LTAEWK-----HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATH 293
               EW       V   +    +   G     DDLTHKL+DIIK N +L RNE++GAA H
Sbjct: 236 FARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAH 295

Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
           V+ +++++LQ+HVATL DN +PGLP A QK G+PLK+IK RLKGKEGRIRGNLMGKRVDF
Sbjct: 296 VLTDDVRLLQYHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDF 355

Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
           SARTVIT DPNL ID VGVPR+IAQN+TFPEIVTPFN+D
Sbjct: 356 SARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVD 394


>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
           elegans GN=ama-1 PE=1 SV=3
          Length = 1856

 Score =  457 bits (1176), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/398 (58%), Positives = 289/398 (72%), Gaps = 18/398 (4%)

Query: 4   ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
            D +APLR V +VQFGIL P+EI+RMSV    ++FPE  E G+PKLGGLMDPRQGVIDR 
Sbjct: 6   VDFQAPLRIVSRVQFGILGPEEIKRMSVAH--VEFPEVYENGKPKLGGLMDPRQGVIDRR 63

Query: 64  SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
            RC TCAGN+T+CPGHFGH++LAKPVFH+GF+TKT+KILRCVCFYC +LL+  S P+V +
Sbjct: 64  GRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLE 123

Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
           ++ KT   S++R   IYDLCK K++CEG  E +       D + + + K+  GGCGRYQP
Sbjct: 124 ILKKTGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPD-DPMNDGKKVAGGCGRYQP 182

Query: 184 NIRRSGLDLTAEW-KHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD--- 239
           + RR G+D+ AEW K+VNED+QE+KI LT + VL   +Q          +I   G+D   
Sbjct: 183 SYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQ------ITDEDILVIGMDPQF 236

Query: 240 LTAEWK-----HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
              EW       V   +    +   G     DDLTHKL+DIIK N +L RNE++GAA HV
Sbjct: 237 ARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHV 296

Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
           + +++++LQFHVATL DN +PGLP A QK G+PLK+IK RLKGKEGRIRGNLMGKRVDFS
Sbjct: 297 LTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFS 356

Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
           ARTVIT DPNL ID VGVPR+IAQN+TFPEIVTPFN+D
Sbjct: 357 ARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVD 394


>sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium
           discoideum GN=polr2a PE=2 SV=2
          Length = 1727

 Score =  393 bits (1009), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/390 (53%), Positives = 257/390 (65%), Gaps = 9/390 (2%)

Query: 6   SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
           S A LR VK+VQFGILSPDEIR MSV    ++ PET E G+PK GGL+DP  G ID++ R
Sbjct: 8   SSAELRKVKRVQFGILSPDEIRNMSVAR--VEHPETYENGKPKAGGLLDPAMGTIDKTQR 65

Query: 66  CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
           CQTC+G M ECPGHFGHI+LAKPVFH+GF+   +KILRCVC++CSKLL   +    R   
Sbjct: 66  CQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDTNEHSFRQ-A 124

Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
           LK + Q  R  A + D CK K +C  G E +   D ++    L +K   HGGCG   P I
Sbjct: 125 LKIRNQKHRLNAVV-DCCKNKKVCAIGGEEEEEHDLSKTDEEL-DKPVKHGGCGNVLPKI 182

Query: 186 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGR---YQPNIRRSGLDLTA 242
            +  L +  E+K V ++S EKK  L+ + VL   K+      R     P+  R+   + A
Sbjct: 183 TKEDLKIIVEFKDVTDESIEKKSVLSAERVLNILKRIKDEDSRAMGINPDWARADW-MIA 241

Query: 243 EWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKML 302
               V        I +       DDLTHKLADI+K N EL R E +GA  H+IAE  + L
Sbjct: 242 TVLPVPPPPVRPSIMMDTSTRGEDDLTHKLADIVKANRELQRQEKNGAPAHIIAEATQFL 301

Query: 303 QFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD 362
           QFHVAT  DN++PGLP+A Q+SG+PLK+I+ RLKGKEGRIRGNLMGKRVDFSARTVIT D
Sbjct: 302 QFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITAD 361

Query: 363 PNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
           PNL IDQVGVPRSIA N+T+PE VTPFN+D
Sbjct: 362 PNLSIDQVGVPRSIALNLTYPETVTPFNID 391


>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=rpb1 PE=1 SV=1
          Length = 1752

 Score =  362 bits (930), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 192/398 (48%), Positives = 256/398 (64%), Gaps = 27/398 (6%)

Query: 6   SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
           S  PLR V++VQFGILSP+EIR MSV +  I+FPETM+  G RP++GGL+DPR G IDR 
Sbjct: 9   SSVPLRRVEEVQFGILSPEEIRSMSVAK--IEFPETMDESGQRPRVGGLLDPRLGTIDRQ 66

Query: 64  SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
            +CQTC   M +CPGHFGHI+LAKPVFH+GF++K  KIL CVC+ C KL +  S+PK  D
Sbjct: 67  FKCQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPKFND 126

Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICE-----GGDEMDINKDGAEDPNSLQNKKQGHGGC 178
              +     + R   ++++CK K +C+     G D  D++   A           GHGGC
Sbjct: 127 T--QRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSA---------NMGHGGC 175

Query: 179 GRYQPNIRRSGLDLTAEWKHVNEDSQ--EKKI--PLTGKGVLLN-KKQGHGGCGRYQPNI 233
           G  QP IR+ GL L   WK   ++S   EK++  PL    +  +   +     G  +   
Sbjct: 176 GAAQPTIRKDGLRLWGSWKRGKDESDLPEKRLLSPLEVHTIFTHISSEDLAHLGLNEQYA 235

Query: 234 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATH 293
           R   + +T              +  T +G   DDLTHKL+DIIK N  + R E  GA  H
Sbjct: 236 RPDWMIITVLPVPPPSVRPSISVDGTSRGE--DDLTHKLSDIIKANANVRRCEQEGAPAH 293

Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
           +++E  ++LQFHVAT  DN++ G P+A+QKSG+PLK+I+ARLKGKEGR+RGNLMGKRVDF
Sbjct: 294 IVSEYEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDF 353

Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
           SARTVIT DPNL +D++GVPRSIA+ +T+PE VTP+N+
Sbjct: 354 SARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNI 391


>sp|A5DCV3|RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1 (Fragments)
           OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
           / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB1
           PE=3 SV=2
          Length = 1579

 Score =  349 bits (896), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 192/395 (48%), Positives = 256/395 (64%), Gaps = 22/395 (5%)

Query: 6   SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
           S APLR VK+VQFG+LSP+E+R +SV +  I++PETM+    RP+ GGL DPR G IDR+
Sbjct: 8   SSAPLRSVKEVQFGLLSPEEVRAISVAK--IEYPETMDQATKRPREGGLNDPRLGSIDRN 65

Query: 64  SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
            +CQTC  +M ECPGHFGHI+LAKPVFH+GF+ K  K+  CVC +C KLL+  S+P +  
Sbjct: 66  FKCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDESNPAMAQ 125

Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
            + + +   +R  A +++LCKGK ICE     D+ +D  E     + K+   GGCG  QP
Sbjct: 126 AI-RIRDPKKRFNA-VWNLCKGKMICEA----DVLQDDGE---GNEPKRTSRGGCGHTQP 176

Query: 184 NIRRSGLDLTAEW---KHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCGRYQPN---IRRS 236
            +R+ GL L   W   K+ +E  Q ++  LT   +L + K      C R   N    R  
Sbjct: 177 VVRKDGLKLWGTWKQNKNYDETEQPERRLLTPSEILNVFKHINSEDCVRLGFNEDYARPE 236

Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
            + +T                 T +G   DDLT KLAD+IK N  + R E  G+  HVI+
Sbjct: 237 WMLITVLPVPPPPVRPSIAFNDTARGE--DDLTFKLADVIKANINVQRLELDGSPQHVIS 294

Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
           E   +LQFHVAT  DND+ G P+A+QK+G+P+K+I+ARLKGKEGR+RGNLMGKRVDFSAR
Sbjct: 295 EFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSAR 354

Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
           TVI+ DPNL +DQVGVP SIA+ +T+PEIVTP+N+
Sbjct: 355 TVISGDPNLDLDQVGVPISIARTLTYPEIVTPYNI 389


>sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II subunit RPB1 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=RPO21 PE=1
           SV=2
          Length = 1733

 Score =  348 bits (892), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 194/396 (48%), Positives = 250/396 (63%), Gaps = 25/396 (6%)

Query: 6   SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
           S APLR VK+VQFG+ SP+E+R +SV +  I+FPETM+    R K+GGL DPR G IDR+
Sbjct: 7   SSAPLRTVKEVQFGLFSPEEVRAISVAK--IRFPETMDETQTRAKIGGLNDPRLGSIDRN 64

Query: 64  SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
            +CQTC   M ECPGHFGHIDLAKPVFHVGF+ K  K+  CVC +C KLL+   H ++  
Sbjct: 65  LKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLD-EHNELMR 123

Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
             L  K  S++R A I+ LCK K +C    E D+  +  +DP  L ++    GGCG  QP
Sbjct: 124 QALAIK-DSKKRFAAIWTLCKTKMVC----ETDVPSE--DDPTQLVSR----GGCGNTQP 172

Query: 184 NIRRSGLDLTAEWK--HVNEDSQEKKIPLTGKGVLLN-----KKQGHGGCGRYQPNIRRS 236
            IR+ GL L   WK      D+ E ++ +     +LN       +     G  +   R  
Sbjct: 173 TIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPE 232

Query: 237 GLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIA 296
            + LT                 + +G   DDLT KLADI+K N  L   E +GA  H I 
Sbjct: 233 WMILTCLPVPPPPVRPSISFNESQRGE--DDLTFKLADILKANISLETLEHNGAPHHAIE 290

Query: 297 ENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
           E   +LQFHVAT  DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 291 EAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSAR 350

Query: 357 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
           TVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 351 TVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNID 386


>sp|Q75A34|RPB1_ASHGO DNA-directed RNA polymerase II subunit RPB1 OS=Ashbya gossypii
           (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
           Y-1056) GN=RPB1 PE=3 SV=2
          Length = 1745

 Score =  340 bits (873), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 190/398 (47%), Positives = 248/398 (62%), Gaps = 29/398 (7%)

Query: 6   SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
           S APLR +K+VQFG+ SP+E+R +SV +  I+FPETM+    R K+GGL DPR G IDR+
Sbjct: 7   SSAPLRTIKEVQFGLFSPEEVRAISVAK--IEFPETMDETQMRAKVGGLNDPRLGSIDRN 64

Query: 64  SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
            +CQTC   M +CPGHFGHI+LAKPVFH+GF++K  K+  CVC +C KLL+   +  +R 
Sbjct: 65  FKCQTCGEGMNDCPGHFGHIELAKPVFHIGFISKIKKVCECVCMHCGKLLLDEYNELMRQ 124

Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
            + K K   RR  A ++ LCK K +C      D      +DP    +K    GGCG  QP
Sbjct: 125 AI-KIKDPKRRFNA-VWSLCKAKMVC------DTEVPSEDDP----SKYISRGGCGNAQP 172

Query: 184 NIRRSGLDLTAEWKH----VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD 239
           +IR+ GL L   WK      + D  EK+I    + + + K        R   N   S   
Sbjct: 173 SIRKDGLSLVGTWKKDKNAEDADQPEKRIISAEEILNVFKHISPEDSWRLGFNEDFS--- 229

Query: 240 LTAEW-----KHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
              EW       V        I         DDLT+KL DI+K N  + R E +G+  HV
Sbjct: 230 -RPEWMLLTVLPVPPPPVRPSISFNESQRGEDDLTYKLGDILKANINVQRLEINGSPQHV 288

Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
           I E+  +LQFHVAT  DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFS
Sbjct: 289 IQESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFS 348

Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
           ARTVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 349 ARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNID 386


>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana
           GN=RPB205 PE=1 SV=3
          Length = 1839

 Score =  335 bits (859), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 179/399 (44%), Positives = 246/399 (61%), Gaps = 21/399 (5%)

Query: 6   SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
           S A +  V+ VQFGILSPDEIR+MSV    ++  ET E G+PK+GGL D R G IDR  +
Sbjct: 8   SPAEVSKVRVVQFGILSPDEIRQMSVIH--VEHSETTEKGKPKVGGLSDTRLGTIDRKVK 65

Query: 66  CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
           C+TC  NM ECPGHFG+++LAKP++HVGF+   + I+RCVCF CSK+L      K +   
Sbjct: 66  CETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHKFKQ-A 124

Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
           +K K    R +  I D CK K  C+GGD++D  +  + D    +  K+  GGCG  QP +
Sbjct: 125 MKIKNPKNRLKK-ILDACKNKTKCDGGDDIDDVQSHSTD----EPVKKSRGGCGAQQPKL 179

Query: 186 RRSGLDLTAEWK----------HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGR--YQPNI 233
              G+ + AE+K           + E ++ K+     + + + K+     C    + P  
Sbjct: 180 TIEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKF 239

Query: 234 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATH 293
            R    +  E   +        + +       DDLTH+LA II+ N  L R E +GA  H
Sbjct: 240 ARPDW-MILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAH 298

Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
           +I+E  ++LQFH+AT  DN++PG PRA QKSG+P+K+I +RLK KEGRIRGNLMGKRVDF
Sbjct: 299 IISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 358

Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
           SARTVITPDP + ID++GVP SIA N+T+PE VTP+N++
Sbjct: 359 SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIE 397


>sp|Q8SSC4|RPB1_ENCCU DNA-directed RNA polymerase II subunit RPB1 OS=Encephalitozoon
           cuniculi (strain GB-M1) GN=RPB1 PE=3 SV=1
          Length = 1599

 Score =  318 bits (816), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 184/388 (47%), Positives = 233/388 (60%), Gaps = 48/388 (12%)

Query: 13  VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
           +K +QFG+ SPDE+R  SV    I  PE MEGG PK GGL+D R G  DR   CQ+C G+
Sbjct: 10  IKSIQFGLFSPDEVRNGSV--ALIVHPEVMEGGVPKTGGLIDLRMGTTDRMYLCQSCGGD 67

Query: 73  MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQS 132
              CPGHFGHI+L KP+FHVG+++K  K+L CVCFYCSK+ +    P+        KG  
Sbjct: 68  NFSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKI----PR--------KG-I 114

Query: 133 RRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDL 192
           +   + ++ + KG+++CEG                L N   G  GCG  QP I+R GL L
Sbjct: 115 KSTLSNVWGMSKGRSVCEG--------------EVLDN---GRSGCGNKQPVIKREGLTL 157

Query: 193 TAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTA---EWK---- 245
            A  K   E+S E K+ L G+ V    K+       Y       G DL     EW     
Sbjct: 158 VAFMK--GEESNEGKVMLNGERVYSIFKKISDEDSVYM------GFDLKYSRPEWMILTV 209

Query: 246 -HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQF 304
             V   +    I + G     DDLTHKLADIIK N  L + E  GA  H++ +  ++LQF
Sbjct: 210 LLVPPPAVRPSIVMEGSLRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLLQF 269

Query: 305 HVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
           HVAT  DND+ GLP+A+QKSG+PLK++ ARLKGKEGRIRGNLMGKRVDFSARTVITPDPN
Sbjct: 270 HVATFIDNDIGGLPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 329

Query: 365 LRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
           + +++VGVP  IA+  TFPE VT FN+D
Sbjct: 330 ISLEEVGVPLEIAKIHTFPEKVTSFNID 357


>sp|P28364|RPB1_EUPOC DNA-directed RNA polymerase II subunit RPB1 (Fragment) OS=Euplotes
           octocarinatus GN=RPB1 PE=3 SV=1
          Length = 478

 Score =  273 bits (698), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 165/408 (40%), Positives = 237/408 (58%), Gaps = 54/408 (13%)

Query: 4   ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
            +S    + V+K+QFG+L P EI+ MSV +  ++  +  + G P  GG+ D R G ++++
Sbjct: 8   TESTMDFQKVRKIQFGLLDPKEIQAMSVVQ--VENEKIYDNGIPTDGGINDLRMGTMEKA 65

Query: 64  SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
            RC TC G+  ECPGHFGHI+LA+PVFH+GF+    KIL+CVCF C+KLL++  H K   
Sbjct: 66  MRCSTCQGDSKECPGHFGHIELAQPVFHIGFIDLVKKILKCVCFNCNKLLITDKHDKYS- 124

Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
             LK     + +   +Y +CK   +C   D               +  +    G G+ QP
Sbjct: 125 -ALKRVKDPKLKLNKVYKVCKDIKVCGKAD---------------RKSETYTEGSGQKQP 168

Query: 184 NIRRSGLDLTAEWKHVNED---SQEKKIPLTGKGVLLNKKQGHGGCGRYQP-NIRRSGLD 239
            +R++GL + AE+  ++ED   + + K  L+    L          GR  P + +  G D
Sbjct: 169 RLRKTGLKIKAEFP-IDEDDPSTNDNKRDLSASECL-------KILGRISPDDCKFLGFD 220

Query: 240 LTA---EWKHVNEDSQEKKIPLTGKGV-----------LLDDLTHKLADIIKCNNELIRN 285
           +     EW  ++      ++P+    V             DDLTH+   I+K NN+L ++
Sbjct: 221 MVLARPEWLIIS------RLPVAPPPVRPSVCMGSNIRQEDDLTHQYQQILKANNQLRKH 274

Query: 286 ESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKS-GKPLKAIKARLKGKEGRIRG 344
            S+  A H+I EN ++LQF+ ATL DN+  G   +  KS GK +KAI+ARLKGKEGR+RG
Sbjct: 275 LST--ANHIINENYQLLQFYCATLIDNEQAGQMVSRHKSGGKAIKAIRARLKGKEGRLRG 332

Query: 345 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
           NLMGKRVDFSARTVIT DP L +DQ+GVPRSIA+N+T PE+VTP N+D
Sbjct: 333 NLMGKRVDFSARTVITCDPTLDLDQLGVPRSIAENITIPEVVTPQNID 380


>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium
           falciparum (isolate CDC / Honduras) GN=RPII PE=3 SV=1
          Length = 2452

 Score =  262 bits (670), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 169/427 (39%), Positives = 232/427 (54%), Gaps = 57/427 (13%)

Query: 6   SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
           S   L+ VK+++ G+L P+ I+++SV E  I   +  + G P+ GGL D R G ID  + 
Sbjct: 10  SACELKRVKRLELGVLDPEIIKKISVCE--IVNVDIYKDGFPREGGLNDIRMGTIDYRTL 67

Query: 66  CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
           C TC  N+  CPGHFGHI+LAKP++H GF+   + +LRCVC++C +LL + +  KV+  +
Sbjct: 68  CGTCNMNVKYCPGHFGHIELAKPMYHYGFMNVVLNVLRCVCYHCGRLLCNVNSSKVK-YI 126

Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDE---MDINKDGAED--PNSLQN---------K 171
            K K  S R +  + +LC G   C+   E   ++IN +   +   N L N          
Sbjct: 127 EKIKVNSLRLRK-LAELCLGIRACDHSVEEEGLNINDNSLNNFYNNDLSNLNMNQQMLLN 185

Query: 172 KQGHGG-----------CGRYQPNIRRSGLDLTAEWKHVNE-DSQEKKIPLTGKGVL--L 217
           K  +             CG  QP   R G ++  ++ H +E D  E K  L+ +  L  L
Sbjct: 186 KSNYTNIFEMVSKEDVDCGCVQPKYSREGPNMYIQFLHSSEEDIDESKRKLSAEEALEIL 245

Query: 218 NK--KQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPL----------TGKGVLL 265
            K  K+     G        + L LT              IP+           G     
Sbjct: 246 KKIRKEEMSILGFNSDRCVPASLILTC-------------IPIPPPCARPYVQYGNQRSE 292

Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
           DDLT KL DI+K N +L R    GA +HV+ +   +LQFH+ TL DND+PG+P A  +S 
Sbjct: 293 DDLTLKLLDIVKTNIQLKRQTDRGAKSHVLQDLCSLLQFHITTLFDNDIPGMPIATTRSK 352

Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
           KP+KAI+ RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL ID +GVP+S+A  +TF E 
Sbjct: 353 KPIKAIRTRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNIDYIGVPKSVAMTLTFCET 412

Query: 386 VTPFNMD 392
           VTP N D
Sbjct: 413 VTPLNYD 419


>sp|Q980R2|RPOA1_SULSO DNA-directed RNA polymerase subunit A' OS=Sulfolobus solfataricus
           (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoA1
           PE=1 SV=1
          Length = 880

 Score =  236 bits (602), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 143/394 (36%), Positives = 209/394 (53%), Gaps = 54/394 (13%)

Query: 13  VKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTCAG 71
           +K ++FGILSPDEIR+MSVT   I  P+   E G P  G +MDPR GVI+   +C TC  
Sbjct: 6   IKGIKFGILSPDEIRKMSVT--AIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGN 63

Query: 72  NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPS----HPKVRDVVLK 127
            +  CPGHFGHI+L +PV HVG V    + L+  C  C ++ +S      + ++ + + K
Sbjct: 64  TLGNCPGHFGHIELVRPVIHVGLVKHIYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKK 123

Query: 128 -TKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIR 186
                +RR   ++        +C   +E        +  N  + +K+G     +  P+  
Sbjct: 124 RWPSAARRLTEYVKKTAMKAQVCPHCNEKQYKIKLEKPYNFYEERKEG---VAKLTPSDI 180

Query: 187 RSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWKH 246
           R  L+               KIP +   +L            Y P   R       EW  
Sbjct: 181 RERLE---------------KIPDSDVEIL-----------GYDPTTSR------PEWMI 208

Query: 247 VNEDSQEKKIPLTGKGVLL--------DDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
           +   +     P+T +  ++        DDLTHKL DI++ N  L  +  +GA   +I + 
Sbjct: 209 L---TVLPVPPITIRPSIMIESGIRAEDDLTHKLVDIVRINERLKESIDAGAPQLIIEDL 265

Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
             +LQ+HVAT  DN++PGLP +  +SG+PL+ +  RLKGKEGR RGNL GKRVDFS+RTV
Sbjct: 266 WDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTV 325

Query: 359 ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
           I+PDPN+ ID+VGVP  IA+ +T PE +TP+N++
Sbjct: 326 ISPDPNISIDEVGVPEIIAKTLTVPERITPWNIE 359


>sp|P31813|RPOA1_THECE DNA-directed RNA polymerase subunit A' OS=Thermococcus celer
           GN=rpoA1 PE=3 SV=1
          Length = 905

 Score =  229 bits (585), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 148/391 (37%), Positives = 206/391 (52%), Gaps = 40/391 (10%)

Query: 11  RCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTC 69
           + +  + FGILSP EIR+MS  E  I  P+T  E G P  GGLMD R GVID   RC+TC
Sbjct: 6   KVIGSIDFGILSPQEIRKMSAAE--ITVPDTYDEDGYPIEGGLMDKRLGVIDPGLRCETC 63

Query: 70  AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTK 129
                ECPGHFGH++LA+PV HVGF     ++L   C  C ++ ++    ++ +   K +
Sbjct: 64  GARAGECPGHFGHVELARPVIHVGFAKTIHRVLESTCRECGRIKLTDE--EIEEYFHKFE 121

Query: 130 GQSRRRQA------FIYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHGGCGRY 181
               R++A       I+   K + +C   G  +  I  +       L+  ++G+    R 
Sbjct: 122 VTGNRKKAKDRLIKEIHKKAKERMVCPHCGSPQFPIKFERPTVYWELRKDEEGNEYKHRM 181

Query: 182 QPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLT 241
            P+  R  L          E   ++ +PL G    L+ ++            R   + LT
Sbjct: 182 MPSEVRDRL----------EKIPDRDLPLIG----LDAEKA-----------RPEWMVLT 216

Query: 242 AEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKM 301
                V   +    I L       DDLTHKL DII+ NN L  N  +GA   +I +   +
Sbjct: 217 V--LPVPPVTMRPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDL 274

Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
           LQ+HV T  +N+  G+P A  KSG+PLK +  RLKGKEGR RGNL GKRV+FSARTVI+P
Sbjct: 275 LQYHVTTYINNETSGIPPAKHKSGRPLKTLSQRLKGKEGRFRGNLSGKRVNFSARTVISP 334

Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
           DP + I++VGVP +IA  +T PE VT FN +
Sbjct: 335 DPMISINEVGVPMAIAMELTVPEKVTEFNFE 365


>sp|P41556|RPOA1_METVS DNA-directed RNA polymerase subunit A' OS=Methanococcus vannielii
           (strain SB / ATCC 35089 / DSM 1224) GN=rpoA1 PE=3 SV=1
          Length = 889

 Score =  207 bits (526), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 203/379 (53%), Gaps = 31/379 (8%)

Query: 16  VQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTCAGNMT 74
           + FG+LSP++IR MSV +  I   +T +  G P  GGLMD R GVID    C++C+G + 
Sbjct: 13  ITFGLLSPEQIRTMSVAK--IVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCKSCSGRVG 70

Query: 75  ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRR 134
            CPGHFGHI+L+K V H+GF     K+L+          V P   KV    +K       
Sbjct: 71  TCPGHFGHIELSKSVIHIGFAKDIYKLLKA---------VCPHCGKVTVTEIK------- 114

Query: 135 RQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGLDLTA 194
           R  ++  + K +   +GGD   ++ D  ++      K      CG  + +I+    D   
Sbjct: 115 RDEYLEKMLKLEE--DGGDPWTLSDDLLKEAA----KSSVCPSCGEVKYDIK---YDKPT 165

Query: 195 EWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD-LTAEWKHVNEDSQE 253
            +  ++  SQ++      + +L  +K  +  C     N R +  + +      V   +  
Sbjct: 166 TYHQLDGKSQKQLTSSEVREIL--EKIPNEDCKLLGINSRVARPEYMVLTVLPVPPVTVR 223

Query: 254 KKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDND 313
             I L       DDLTHKL DII+ N  L  N + GA   +I +   +LQ+H+ T  DN+
Sbjct: 224 PSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNE 283

Query: 314 MPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVP 373
            PG+P A  +SG+PL+ +  RLKGKEGR R NL GKRV+FSARTVI+PDP L I++VG+P
Sbjct: 284 APGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINEVGIP 343

Query: 374 RSIAQNMTFPEIVTPFNMD 392
             IA+ +T PE VTP+N++
Sbjct: 344 ELIAKELTVPEKVTPYNIE 362


>sp|Q86AQ5|RPC1_DICDI DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium
           discoideum GN=polr3a PE=3 SV=1
          Length = 1450

 Score =  181 bits (458), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/393 (33%), Positives = 194/393 (49%), Gaps = 30/393 (7%)

Query: 16  VQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTE 75
           +QFG+LS D+I R+S  +   +    +   +P   G++D + G  D+ + C TC  ++ +
Sbjct: 17  IQFGLLSEDDIVRLSHVQIVNRELFDLVKRKPTPYGVLDNKLGTSDKQAMCTTCGLSIVD 76

Query: 76  CPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK--VRDVVLKTKGQSR 133
           C GHFG+I L  PVFH+G++   + IL+ +C  CS +L++    +  +R +  K     +
Sbjct: 77  CVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCSTILLNEEKKQYYLRKMRNKKMDNLQ 136

Query: 134 RRQAF--IYDLCKGKNICE--GGDEMDINKDGAED---------PNSLQNKKQGHGGCGR 180
           R+     I+  C+    C   G     I K GA             SLQ+    +    +
Sbjct: 137 RKSLLKKIFLECRKTKECLKCGSTNGMIKKSGAFKIIHEKYKGKTESLQDYYALYDDAIK 196

Query: 181 YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDL 240
           Y P ++           H+ + +Q+   PL    +               P I R    L
Sbjct: 197 YNPEMK----------SHIKK-AQDDLNPLVALNLFKKISYQDIEIMNMDPVIGRPE-RL 244

Query: 241 TAEWKHVNEDSQEKKIPLTG-KGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENI 299
              +  V   S    +P+ G  G   DDLT KL++I+  N E IR+    A    I E+ 
Sbjct: 245 ILTYMLVPPVSIRPSVPMDGGSGTNEDDLTMKLSEILHIN-EHIRSNVDRAEMSAIMEDW 303

Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
             LQ   A   ++D+PGLP  M K  K ++ +  RLKGK GR RGNL GKRVDFS RTVI
Sbjct: 304 DYLQASCAIYINSDVPGLPLQM-KPTKAVRGLSQRLKGKTGRFRGNLSGKRVDFSGRTVI 362

Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
           +PDPNL ID+V VP+ IA  MT+PE VT +N++
Sbjct: 363 SPDPNLNIDEVAVPQLIALTMTYPERVTDYNIE 395


>sp|Q03585|RPOA1_THEAC DNA-directed RNA polymerase subunit A' OS=Thermoplasma acidophilum
           (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
           AMRC-C165) GN=rpoA1 PE=3 SV=1
          Length = 885

 Score =  177 bits (448), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 134/395 (33%), Positives = 192/395 (48%), Gaps = 56/395 (14%)

Query: 13  VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
           +  ++F +LSPDEIR++S  +  I      + G P   GLMD   GVI+   RC TC G 
Sbjct: 8   ISSIKFALLSPDEIRKLSQVKV-ITADTYDDDGYPIEHGLMDLHMGVIEPGLRCATCGGK 66

Query: 73  MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQS 132
           + ECPGHFGHI+LA PV HVGFV +    L   C  C ++       K+ D  ++T    
Sbjct: 67  VDECPGHFGHIELAMPVVHVGFVKEIKMFLDATCRSCGRI-------KLTDDEIRTYLPE 119

Query: 133 RRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI------- 185
            ++  F           E GD  DI     +  + L +++     CG  Q  I       
Sbjct: 120 IQKMDF-----------ETGDPEDIEILTKKYVD-LASQRMVCPHCGAQQSKIILDKPTT 167

Query: 186 -RRSGLDLTAEWKHVNEDSQEKKIP---LTGKGVLLNKKQGHGGCGRYQP----NIRRSG 237
            R  G ++    K + E  + ++IP   L   G      +         P    N+R S 
Sbjct: 168 FREEGTNVKITPKEIRE--RLERIPDDDLIFFGFNPKTARPEWMVLTVLPVPPINVRPS- 224

Query: 238 LDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAE 297
             +T E    +ED       LT K V +  ++ +L +          +  +G+   +I +
Sbjct: 225 --ITLETGERSEDD------LTHKLVDIIRISQRLRE----------SRDNGSPQLIIED 266

Query: 298 NIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
              +LQFHV T  DN  PG+P A  +SG+ LK +  RLKGKEGR R NL GKRV FS+RT
Sbjct: 267 LWDLLQFHVTTYFDNQTPGIPPARHRSGRALKTLVQRLKGKEGRFRSNLSGKRVSFSSRT 326

Query: 358 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
           VI+P+P L +++VGVP   A+ +T P IV  FN+D
Sbjct: 327 VISPEPYLSVNEVGVPERAARELTVPVIVNQFNID 361


>sp|P17546|RPB1A_TRYBB DNA-directed RNA polymerase II subunit RPB1-A OS=Trypanosoma brucei
           brucei GN=TRP4.8 PE=1 SV=1
          Length = 1766

 Score =  172 bits (437), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 133/396 (33%), Positives = 188/396 (47%), Gaps = 16/396 (4%)

Query: 2   AMADSKAPLRCVKKVQFGILSPDEIRRMSV--TEGGIKFPETM-EGGRPKLGGLMDPRQG 58
           A+  S+  L  V +VQF I    +I+  +V   E    +     + G   +  +  P   
Sbjct: 6   ALPVSQMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYANAADQSGEASMICVWVP--- 62

Query: 59  VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
            +  +S C+TC     ECPGHFG+I+LA+PVF++G     + +L+CVC  C  LL++   
Sbjct: 63  -LTSNSACETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTRE 121

Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHG-- 176
             V   +    G +R RQ  +  + + K       E D+  DG +          G G  
Sbjct: 122 QDVHKKLQHVTGLNRLRQ--VAKMAEAKCRVSTSTEDDMGIDGFDSAPFNGGSGMGPGAT 179

Query: 177 -GCGRYQPNIRR-SGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIR 234
            GCG  QP + R  G+  T   K V+E+   +      + VL            + P  R
Sbjct: 180 RGCGASQPRVSRFYGIYPTLVIKAVHEEQDAEWHADKVRQVLDRVSDDDARLMGFDPQ-R 238

Query: 235 RSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
               DL      V        I   G     D+LTH++  I+K NN+L R++ S      
Sbjct: 239 CHPRDLVLTVLPVPPPQVRPAISFGGLRSD-DELTHQIMSIVKRNNQLRRDKESDVQA-A 296

Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
           I  +  +LQ HVAT  +N             K LK++  RLKGK GR+RGNLMGKRVDFS
Sbjct: 297 IDRSRALLQEHVATYFNNASTYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFS 356

Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN 390
           ARTVIT DPN+ +D+VGVP S+A  +TFPE V   N
Sbjct: 357 ARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVN 392


>sp|P17545|RPB1B_TRYBB DNA-directed RNA polymerase II subunit RPB1-B OS=Trypanosoma brucei
           brucei GN=TRP5.9 PE=1 SV=1
          Length = 1766

 Score =  172 bits (436), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 133/396 (33%), Positives = 188/396 (47%), Gaps = 16/396 (4%)

Query: 2   AMADSKAPLRCVKKVQFGILSPDEIRRMSV--TEGGIKFPETM-EGGRPKLGGLMDPRQG 58
           A+  S+  L  V +VQF I    +I+  +V   E    +     + G   +  +  P   
Sbjct: 6   ALPVSQMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYANAADQSGEASMICVWVP--- 62

Query: 59  VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
            +  +S C+TC     ECPGHFG+I+LA+PVF++G     + +L+CVC  C  LL++   
Sbjct: 63  -LTSNSACETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTRE 121

Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHG-- 176
             V   +    G +R RQ  +  + + K       E D+  DG +          G G  
Sbjct: 122 QDVHKKLQHMTGLNRLRQ--VAKMAEAKCRVSTSTEDDMGIDGFDSAPFNGGSGMGPGAT 179

Query: 177 -GCGRYQPNIRR-SGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIR 234
            GCG  QP + R  G+  T   K V+E+   +      + VL            + P  R
Sbjct: 180 RGCGASQPRVSRFYGIYPTLVIKAVHEEQDAEWHADKVRQVLDRVSDDDARLMGFDPQ-R 238

Query: 235 RSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
               DL      V        I   G     D+LTH++  I+K NN+L R++ S      
Sbjct: 239 CHPRDLVLTVLPVPPPQVRPAISFGGLRSD-DELTHQIMSIVKRNNQLRRDKESDVQA-A 296

Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
           I  +  +LQ HVAT  +N             K LK++  RLKGK GR+RGNLMGKRVDFS
Sbjct: 297 IDRSRALLQEHVATYFNNASTYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFS 356

Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN 390
           ARTVIT DPN+ +D+VGVP S+A  +TFPE V   N
Sbjct: 357 ARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTIN 392


>sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=rpc1 PE=2 SV=1
          Length = 1405

 Score =  168 bits (425), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 133/404 (32%), Positives = 199/404 (49%), Gaps = 33/404 (8%)

Query: 5   DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
           D + P R +K +QFGI  P+E  +    E   +   TM    P   G +D   G  ++  
Sbjct: 6   DDQIPKR-IKHLQFGINGPEEFVKDGTVEVSRRDLYTMTDRSPAEHGALDLHMGTSNKQI 64

Query: 65  RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK--VR 122
            C TC  +M +C GHFG++ LA PVFH+G+   T+ IL+ +C  CS +L+S    +  ++
Sbjct: 65  NCATCGESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDCSSVLLSDQEKRQFLK 124

Query: 123 DVVLKTKGQSRRRQAF--IYDLCKGKNICEGGDEMD--INKDGAEDPNSLQNKKQGHGGC 178
           D+        RR Q    I D CK    C   D M   + K G   P  + +++      
Sbjct: 125 DLRRPGIDNLRRSQICKRINDHCKKMRRCSKCDAMQGVVKKAG---PLKIIHER------ 175

Query: 179 GRYQPNIRRSGLDLTAEWKHVNEDS----QEKKIPLTGKGVLLNKKQGHGGCGRYQP-NI 233
            RY   +R+S  D    ++H  +++     E K+ L+     LN  +      +  P + 
Sbjct: 176 FRY---VRKSQ-DDEENFRHSFDEALKTIPELKMHLSKAHDDLNPLKVLNLFKQITPVDC 231

Query: 234 RRSGLD------LTAEWKHVNEDSQEKKIPLTGKGVLLD-DLTHKLADIIKCNNELIRNE 286
              G+D          W++V       +  +  +G   + DLT K+ +II  ++ +    
Sbjct: 232 ELLGMDPEHGRPENLLWRYVPAPPVCIRPSVAQEGATTEDDLTVKITEIIWTSSLIRAAL 291

Query: 287 SSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNL 346
           S G     + E  + +Q  +A   +++MPGL R      KP++    RLKGK+GR RGNL
Sbjct: 292 SKGTPISNLMEQWEFMQLSIAMYINSEMPGL-RPSDMPSKPIRGFCQRLKGKQGRFRGNL 350

Query: 347 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN 390
            GKRVDFS RTVI+PDPNLRIDQV VP  IA+ +TFPE VT  N
Sbjct: 351 SGKRVDFSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQN 394


>sp|P11512|RPOA1_SULAC DNA-directed RNA polymerase subunit A' OS=Sulfolobus acidocaldarius
           (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
           NCIMB 11770) GN=rpoA1 PE=3 SV=2
          Length = 880

 Score =  155 bits (392), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 74/127 (58%), Positives = 95/127 (74%)

Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
           DDLTHKL DII+ N  L  +  +GA   +I +   +LQ+HVAT  DN++PGLP A  +SG
Sbjct: 233 DDLTHKLVDIIRLNERLKESIEAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPAKHRSG 292

Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
           +PL+ +  RLKGKEGR RGNL GKRVDFSARTVI+PDPNL ID+VG+P +IA+ +T PE 
Sbjct: 293 RPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNLSIDEVGIPYTIARMLTVPER 352

Query: 386 VTPFNMD 392
           VT  N++
Sbjct: 353 VTNINIE 359



 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 73/135 (54%), Gaps = 17/135 (12%)

Query: 11  RCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTC 69
           + ++ V+FG+LSP+EIR+MSVT   I   E   E G P  GG+MDP+ GVI+   +C  C
Sbjct: 4   KIIRGVKFGVLSPNEIRQMSVT--AIITSEVYDEDGTPIEGGVMDPKLGVIEPGQKCPVC 61

Query: 70  AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTK 129
              +  CPGHFGHI+L KPV H+G+V      LR  C+ C +              +K K
Sbjct: 62  GNTLAGCPGHFGHIELIKPVIHIGYVKHIYDFLRSTCWRCGR--------------IKIK 107

Query: 130 GQSRRRQAFIYDLCK 144
            Q   R   IY+  K
Sbjct: 108 EQDLERYKRIYNAIK 122


>sp|Q58445|RPOA1_METJA DNA-directed RNA polymerase subunit A' OS=Methanocaldococcus
           jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
           10045 / NBRC 100440) GN=rpoA1 PE=3 SV=2
          Length = 1341

 Score =  147 bits (371), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/127 (55%), Positives = 91/127 (71%)

Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
           DDLTHKL DII+ NN L  N   GA   +I +   +LQ+HV T  DN+ PG+P A  +SG
Sbjct: 236 DDLTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNLLQYHVNTYFDNEAPGIPPAKHRSG 295

Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
           +PLK +  RLKGKEGR R NL GKRV+FS+RTVI+PDP L I++VGVP  +A+ +T PE 
Sbjct: 296 RPLKTLAQRLKGKEGRFRYNLAGKRVNFSSRTVISPDPCLSINEVGVPEVVAKELTVPEK 355

Query: 386 VTPFNMD 392
           VT +N++
Sbjct: 356 VTKYNIE 362



 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/109 (51%), Positives = 73/109 (66%), Gaps = 3/109 (2%)

Query: 13  VKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTCAG 71
           + ++ FG+LSPD IR+MSV +  I  P+T  E G P  GGLMD R GVID    C+TC G
Sbjct: 10  IGEIMFGLLSPDYIRQMSVAK--IVTPDTYDEDGYPIDGGLMDTRLGVIDPGLVCKTCGG 67

Query: 72  NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
            + ECPGHFGHI+LAKPV H+GF     KIL+ VC +C ++ +S +  K
Sbjct: 68  RIGECPGHFGHIELAKPVIHIGFAKTIYKILKAVCPHCGRVAISETKRK 116


>sp|O27125|RPOA1_METTH DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
           thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
           10044 / NBRC 100330 / Delta H) GN=rpoA1 PE=3 SV=1
          Length = 870

 Score =  144 bits (364), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/127 (53%), Positives = 91/127 (71%)

Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
           DDLTHKL DI++ N  L  N  +GA   ++ +  ++LQ+HV T  DN+  G+P A  +SG
Sbjct: 229 DDLTHKLVDILRINQRLKENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRSG 288

Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
           +PLK +  RLKGKEGR R NL GKRV+FSARTVI+PDPN+ I++VGVP  IA+ +T P  
Sbjct: 289 RPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVISPDPNISINEVGVPEIIAREVTVPVY 348

Query: 386 VTPFNMD 392
           VT +N+D
Sbjct: 349 VTEWNID 355



 Score =  113 bits (282), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/109 (50%), Positives = 74/109 (67%), Gaps = 3/109 (2%)

Query: 10  LRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQT 68
           L+ + ++ FG++SP++IR+MSVT+  I  P+T  E G P   GLMDPR GVID S RC+T
Sbjct: 5   LKKISQINFGLMSPEDIRKMSVTQ--IVTPDTYDEDGYPIENGLMDPRLGVIDPSLRCRT 62

Query: 69  CAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPS 117
           C     ECPGHFG I+LA+PV HVGF     KILR  C  C ++L++ +
Sbjct: 63  CGAKGGECPGHFGSINLARPVIHVGFADTIHKILRSTCRKCGRVLLTET 111


>sp|P09846|RPOA1_METTW DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
           thermoautotrophicus (strain Winter) GN=rpoA1 PE=3 SV=2
          Length = 865

 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/127 (51%), Positives = 91/127 (71%)

Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
           DDLTHKL DI++ N  L  N  +GA   ++ +  ++LQ+HV T  DN+  G+P A  +SG
Sbjct: 229 DDLTHKLVDILRINQRLKENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRSG 288

Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
           +PLK +  RLKGKEGR R NL GKRV+FSARTV++PDPN+ +++VGVP  IA+ +T P  
Sbjct: 289 RPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVVSPDPNVSVNEVGVPELIAKEVTVPVY 348

Query: 386 VTPFNMD 392
           VT +N+D
Sbjct: 349 VTEWNID 355



 Score =  105 bits (263), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 72/110 (65%), Gaps = 3/110 (2%)

Query: 10  LRCVKKVQFGILSPDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQT 68
           L+ + ++ FG++SP++IR+MSV +  I  P+T  E G P    LMDPR GVI  S RC++
Sbjct: 5   LKKISQINFGLMSPEDIRKMSVAQ--IVTPDTYDEDGYPIENELMDPRLGVIGSSLRCRS 62

Query: 69  CAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
           C     ECPGHFG I+LA+PV HVGF     KIL  +C  CS++L++ + 
Sbjct: 63  CGAKGGECPGHFGSINLARPVIHVGFADTIHKILSSICRKCSRILLTETE 112


>sp|Q7T6X5|RPO1_MIMIV DNA-directed RNA polymerase subunit 1 OS=Acanthamoeba polyphaga
           mimivirus GN=RPO1 PE=1 SV=2
          Length = 1495

 Score =  143 bits (360), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/129 (56%), Positives = 91/129 (70%), Gaps = 2/129 (1%)

Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHV--IAENIKMLQFHVATLTDNDMPGLPRAMQK 323
           DDLTHKL DIIK N  L   +  G+      I ++  +LQ HVAT   NDM GL R+ QK
Sbjct: 266 DDLTHKLIDIIKSNENLKNTKGDGSLIKYTSINDDFMLLQLHVATFFANDMAGLARSQQK 325

Query: 324 SGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFP 383
           + K  K++  RL+GKEGRIRGNLMGKRVD SARTVIT DPN+ +++VGVP  IA+N+TF 
Sbjct: 326 NKKVTKSMSERLRGKEGRIRGNLMGKRVDMSARTVITSDPNIALNEVGVPLIIAKNLTFD 385

Query: 384 EIVTPFNMD 392
           EIVT  N++
Sbjct: 386 EIVTEHNIE 394



 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 77/145 (53%), Gaps = 6/145 (4%)

Query: 10  LRCVKKVQFGILSPDEIRRMS--VTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRSSR 65
           +  V++++F I S + I R S  V   GI   ET       P  GG++D R GV +    
Sbjct: 15  IETVERIEFCINSNESIIRHSAIVDPNGITEAETFNSNNNEPVQGGVIDKRLGVTESHLE 74

Query: 66  CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
           C TC      CPGHFGHI   +PVFH+G++     IL C+C  C+KLLV  +  ++   +
Sbjct: 75  CSTCGETALRCPGHFGHIKFVEPVFHMGYLIYLKHILSCICIRCNKLLVYKNEKEIA-AL 133

Query: 126 LKTKGQSRRRQAFIYDLCKGKNICE 150
           +K K Q ++R A I  +CK    C+
Sbjct: 134 IKNK-QGKQRFAEIRSICKKVTHCQ 157


>sp|P0CX02|RPOA1_HALSA DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
           (strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoA1 PE=3
           SV=1
          Length = 971

 Score =  139 bits (349), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 65/127 (51%), Positives = 88/127 (69%)

Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
           DDLTHKL DII+ N   + N  +GA   +I +  ++LQ+HV T  DN++ G P A  +SG
Sbjct: 305 DDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRSG 364

Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
           +PLK +  RLKGKEGR RG+L GKRV+FSARTVI+PDP L +++VGVP  +A  MT   +
Sbjct: 365 RPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVATEMTQTMV 424

Query: 386 VTPFNMD 392
           V   N++
Sbjct: 425 VNEQNLE 431



 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 66/113 (58%), Gaps = 2/113 (1%)

Query: 3   MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDR 62
           M+  +AP + + ++ FG++ P+E R MS T+  I      + G P   GLMDPR GVID 
Sbjct: 1   MSAGQAP-KEIGEISFGLMDPEEYRDMSATKV-ITADTYDDDGFPIDMGLMDPRLGVIDP 58

Query: 63  SSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVS 115
              C+TC      C GHFGHI+LA PV HVGF     ++LR  C  C+ LL++
Sbjct: 59  GLECKTCGQRSGGCNGHFGHIELAAPVIHVGFSKLIRRLLRGTCRECASLLLT 111


>sp|B0R8D4|RPOA1_HALS3 DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
           (strain ATCC 29341 / DSM 671 / R1) GN=rpoA1 PE=1 SV=1
          Length = 971

 Score =  139 bits (349), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 65/127 (51%), Positives = 88/127 (69%)

Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
           DDLTHKL DII+ N   + N  +GA   +I +  ++LQ+HV T  DN++ G P A  +SG
Sbjct: 305 DDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRSG 364

Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
           +PLK +  RLKGKEGR RG+L GKRV+FSARTVI+PDP L +++VGVP  +A  MT   +
Sbjct: 365 RPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVATEMTQTMV 424

Query: 386 VTPFNMD 392
           V   N++
Sbjct: 425 VNEQNLE 431



 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 66/113 (58%), Gaps = 2/113 (1%)

Query: 3   MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDR 62
           M+  +AP + + ++ FG++ P+E R MS T+  I      + G P   GLMDPR GVID 
Sbjct: 1   MSAGQAP-KEIGEISFGLMDPEEYRDMSATKV-ITADTYDDDGFPIDMGLMDPRLGVIDP 58

Query: 63  SSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVS 115
              C+TC      C GHFGHI+LA PV HVGF     ++LR  C  C+ LL++
Sbjct: 59  GLECKTCGQRSGGCNGHFGHIELAAPVIHVGFSKLIRRLLRGTCRECASLLLT 111


>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III subunit RPC1 OS=Plasmodium
           falciparum PE=3 SV=1
          Length = 2339

 Score =  119 bits (299), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/133 (44%), Positives = 84/133 (63%), Gaps = 2/133 (1%)

Query: 262 GVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPR-- 319
           G   DDLT  L++I + NN +    ++G  T+    N++ LQ  +    ++D P + +  
Sbjct: 268 GTAEDDLTCILSEITQLNNTIYNQCTNGYQTNQFLGNVEFLQLQITRFINSDSPAVSQLL 327

Query: 320 AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 379
           A Q   KP + I  RLKGKEGR R NL GKRVDFS+RTVI+PDPN+ ID+V +P+ IA  
Sbjct: 328 ATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRTVISPDPNISIDEVVIPKIIAMR 387

Query: 380 MTFPEIVTPFNMD 392
           +T+PE V  +N+D
Sbjct: 388 LTYPETVNKYNID 400



 Score = 82.0 bits (201), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 20/113 (17%)

Query: 13  VKKVQFGILSPDEI----------RRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDR 62
           +K ++FGI+S ++I          R M     GI +P           G++D + G    
Sbjct: 35  IKSIRFGIMSKEDIIKYSEVKIMNREMYKNNSGIPYPY----------GVLDLKLGAHKS 84

Query: 63  SSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVS 115
           +S C+TC   +  C GHFG+I+L  PVFH+G+    I IL C+C YCS LL+S
Sbjct: 85  NSVCETCNKKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCSSLLLS 137


>sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens
           GN=POLR3A PE=1 SV=2
          Length = 1390

 Score =  119 bits (297), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 62/127 (48%), Positives = 83/127 (65%), Gaps = 1/127 (0%)

Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
           DDLT KL +II  N+ + ++  SGA T +I E+   LQ   A   ++++ G+P  M    
Sbjct: 277 DDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK- 335

Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
           K  +    RLKGK+GR RGNL GKRVDFS RTVI+PDPNLRID+V VP  +A+ +TFPE 
Sbjct: 336 KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEK 395

Query: 386 VTPFNMD 392
           V   N++
Sbjct: 396 VNKANIN 402



 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 13  VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR-PKLGGLMDPRQGVIDRSSRCQTCAG 71
           +  + FG+ SP+E+R+ +  +   K   + +    P L G++D R G  ++   C+TC  
Sbjct: 15  ISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMGTSEKDRPCETCGK 74

Query: 72  NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKG- 130
           N+ +C GH+G+IDL  P FHVG+    I IL+ +C  C  +++S    K     LK  G 
Sbjct: 75  NLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPGL 134

Query: 131 ---QSRRRQAFIYDLCKGKNIC 149
              Q R  +  I D C+ KNIC
Sbjct: 135 TYLQKRGLKKKISDKCRKKNIC 156


>sp|A4IF62|RPC1_BOVIN DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus
           GN=POLR3A PE=2 SV=1
          Length = 1390

 Score =  118 bits (296), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 62/127 (48%), Positives = 83/127 (65%), Gaps = 1/127 (0%)

Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
           DDLT KL +II  N+ + ++  SGA T +I E+   LQ   A   ++++ G+P  M    
Sbjct: 277 DDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK- 335

Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
           K  +    RLKGK+GR RGNL GKRVDFS RTVI+PDPNLRID+V VP  +A+ +TFPE 
Sbjct: 336 KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEK 395

Query: 386 VTPFNMD 392
           V   N++
Sbjct: 396 VNKANIN 402



 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 13  VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR-PKLGGLMDPRQGVIDRSSRCQTCAG 71
           +  + FG+ S +E+R+ +  +   K   + +    P L G++D R G  ++   C+TC  
Sbjct: 15  ISHICFGMKSAEEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDHRMGTSEKDRPCETCGK 74

Query: 72  NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKG- 130
           N+ +C GH+G+IDL  P FHVG+    I IL+ +C  C  +++S    K     LK  G 
Sbjct: 75  NLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPGL 134

Query: 131 ---QSRRRQAFIYDLCKGKNIC 149
              Q R  +  I D C+ KN C
Sbjct: 135 TYLQKRGLKKKISDKCRKKNTC 156


>sp|Q5ZL98|RPC1_CHICK DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus
           GN=POLR3A PE=2 SV=1
          Length = 1390

 Score =  118 bits (296), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 62/127 (48%), Positives = 83/127 (65%), Gaps = 1/127 (0%)

Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
           DDLT KL +II  N+ + ++  SGA T +I E+   LQ   A   ++++ G+P  M    
Sbjct: 277 DDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK- 335

Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
           K  +    RLKGK+GR RGNL GKRVDFS RTVI+PDPNLRID+V VP  +A+ +TFPE 
Sbjct: 336 KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPIHVAKILTFPEK 395

Query: 386 VTPFNMD 392
           V   N++
Sbjct: 396 VNKANIN 402



 Score = 78.2 bits (191), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 13  VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR-PKLGGLMDPRQGVIDRSSRCQTCAG 71
           +  + FG+ SP+E+R+ +  +   K   + +    P   G++D R G  ++   C+TC  
Sbjct: 15  ISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMGTSEKDRPCETCGK 74

Query: 72  NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKG- 130
           N+ +C GH+G+IDL  P FHVG+    I IL+ +C  C ++++S    K     LK  G 
Sbjct: 75  NLADCLGHYGYIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSVEEKKQFLDYLKRPGL 134

Query: 131 ---QSRRRQAFIYDLCKGKNIC 149
              Q R  +  + + C+ KN C
Sbjct: 135 TYLQKRGLKKKVSEKCRKKNTC 156


>sp|P04051|RPC1_YEAST DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=RPO31 PE=1
           SV=1
          Length = 1460

 Score =  103 bits (256), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 80/130 (61%), Gaps = 5/130 (3%)

Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPG---LPRAMQ 322
           DDLT KL +I+  ++ +      G + + + E+   LQ  VA   ++D      LP +  
Sbjct: 283 DDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSN 342

Query: 323 KSGK--PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNM 380
             GK  P++    RLKGK+GR RGNL GKRVDFS RTVI+PDPNL ID+V VP  +A+ +
Sbjct: 343 GGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVL 402

Query: 381 TFPEIVTPFN 390
           T+PE VT +N
Sbjct: 403 TYPEKVTRYN 412



 Score = 91.7 bits (226), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 79/149 (53%), Gaps = 6/149 (4%)

Query: 6   SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR-PKLGGLMDPRQGVIDRSS 64
           S+ P R +K ++F  LS  +I   S  E   +    +E  R PK  G +DP+ GV   S 
Sbjct: 7   SETPKR-IKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMGVSSSSL 65

Query: 65  RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
            C TC GN+  C GHFGH+ LA PVFH+G+   TI+IL+ +C  CS +L+S +  +    
Sbjct: 66  ECATCHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETDKRQFLH 125

Query: 125 VLKTKG-QSRRRQAF---IYDLCKGKNIC 149
            L+  G  + RR      I D CK +  C
Sbjct: 126 ELRRPGVDNLRRMGILKKILDQCKKQRRC 154


>sp|Q6BI69|RPC1_DEBHA DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces
           hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
           0083 / IGC 2968) GN=RPC1 PE=3 SV=2
          Length = 1457

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 1/105 (0%)

Query: 11  RCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR-PKLGGLMDPRQGVIDRSSRCQTC 69
           +C+K ++FG LS  +I   S  E   +    +E GR PK GG +D + G+   ++ C TC
Sbjct: 11  KCIKGIEFGALSAKDIIAQSEVEVHTRDLYDLEKGRIPKDGGALDTKMGISSNANECATC 70

Query: 70  AGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLV 114
            GN+  C GHFGHI LA PVFHVG+   TI++L+C+C  CS +L+
Sbjct: 71  HGNLASCHGHFGHIKLALPVFHVGYFKATIQVLQCICKNCSAVLL 115



 Score = 99.0 bits (245), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 79/130 (60%), Gaps = 5/130 (3%)

Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM--PGL---PRA 320
           DDLT KL +I+  ++ +      G + + + E    LQ  VA   ++D   P L      
Sbjct: 280 DDLTIKLTEIVWTSSLIKAGIEKGISINNLMEQWDYLQLSVAMYINSDSANPALLPSSGG 339

Query: 321 MQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNM 380
             KS KP++    RLKGK+GR RGNL GKRVDFS RTVI+PDPNL+ID+V VP  +A+ +
Sbjct: 340 GSKSSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVL 399

Query: 381 TFPEIVTPFN 390
           T+PE  T +N
Sbjct: 400 TYPEKCTRYN 409


>sp|P25202|RPC1_GIAIN DNA-directed RNA polymerase III subunit RPC1 OS=Giardia
           intestinalis GN=RPOA3 PE=3 SV=1
          Length = 1741

 Score = 97.8 bits (242), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/138 (43%), Positives = 76/138 (55%), Gaps = 5/138 (3%)

Query: 259 TGKGVLLDDLTHKLADIIKCNNELIRNESSGA-ATHVIAENIKMLQFHVATLTDNDMPG- 316
           +G G   D+LT  L  I+  N++L     SGA AT  +      L   V+ L    +PG 
Sbjct: 326 SGAGTTEDNLTSHLVRILTINDKLKEAMVSGAVATSKVYAKWDQLNMDVSLLYIGKIPGG 385

Query: 317 ---LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVP 373
              +        K    I  RLKGK GR R NL GKRV+FS RTVI+P+P L + QV +P
Sbjct: 386 VQPVKNKTDSGTKEGTGIIDRLKGKAGRFRSNLSGKRVNFSGRTVISPNPYLSMQQVAIP 445

Query: 374 RSIAQNMTFPEIVTPFNM 391
           R IAQN+TFPEIVT  N+
Sbjct: 446 RLIAQNLTFPEIVTSRNI 463



 Score = 72.4 bits (176), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 13  VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG-RPKLGGLMDPRQGVIDRSSRCQTCAG 71
           V+K+ F +LS + +  M ++E  I  P   E    P   G++D R G+ D+  +C TC  
Sbjct: 27  VEKLVFSVLSSNAL--MKLSEVQITTPILYEHYPSPATNGVLDKRLGLSDKVGKCATCGK 84

Query: 72  NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPS 117
           +   C GHFG I LA PVFH G +     +L  VC +CS++ +S +
Sbjct: 85  DTKMCIGHFGTISLALPVFHPGLINDARTMLSIVCPFCSRVKISEA 130


>sp|Q9KW13|RPOC_SHEVI DNA-directed RNA polymerase subunit beta' OS=Shewanella violacea
           GN=rpoC PE=3 SV=1
          Length = 1409

 Score = 95.9 bits (237), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 170/407 (41%), Gaps = 82/407 (20%)

Query: 16  VQFGILSPDEIRRMSVTEGGIKFPETM--EGGRPKLGGLMDPR---------------QG 58
           ++ G+ SPD IR  S   G +K PET+     +P+  GL   R               + 
Sbjct: 20  IKIGLASPDLIRSWSF--GEVKKPETINYRTFKPEREGLFCARIFGPVKDYECLCGKYKR 77

Query: 59  VIDRSSRCQTCAGNMTECP---GHFGHIDLAKPVFHVGFVTK-----------TIKILRC 104
           +  R   C+ C   +T+        GHIDLA PV H+ F+             T++ +  
Sbjct: 78  LKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSLPSRIGLMLDMTLRDIER 137

Query: 105 VCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAED 164
           V ++ S +++ P    +       +GQ    ++++        + E GDE +  K GAE 
Sbjct: 138 VLYFESFVVIEPGMTSLE------RGQMLTEESYL------DALEEYGDEFE-AKMGAEA 184

Query: 165 PNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHG 224
              L    +           + +    L  E   +N +++ KK+    K + L +   H 
Sbjct: 185 VLELLRAIE-----------LEKEIESLREELPSINSETRRKKMT---KRLKLIEAFFHS 230

Query: 225 GCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCN 279
           G    +P           EW       V        +PL G      DL      +I  N
Sbjct: 231 GN---KP-----------EWMILKVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN 276

Query: 280 NELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGK-PLKAIKARLKGK 338
           N L R     A   ++    +MLQ  V  L DN   G  RA+  S K PLK++   +KGK
Sbjct: 277 NRLKRLLDLAAPDIIVRNEKRMLQESVDALLDNGRRG--RAITGSNKRPLKSLADMIKGK 334

Query: 339 EGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
           +GR R NL+GKRVD+S R+VIT  P LR+ Q G+P+ +A  +  P I
Sbjct: 335 QGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFI 381


>sp|A6UZI2|RPOC_PSEA7 DNA-directed RNA polymerase subunit beta' OS=Pseudomonas aeruginosa
           (strain PA7) GN=rpoC PE=3 SV=1
          Length = 1399

 Score = 94.7 bits (234), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 166/402 (41%), Gaps = 72/402 (17%)

Query: 16  VQFGILSPDEIRRMSVTEGGIKFPETM--EGGRPKLGGLMDPR---------------QG 58
           ++ G+ SP+ IR  S   G +K PET+     +P+  GL   +               + 
Sbjct: 20  IRIGLASPEMIRSWSF--GEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECLCGKYKR 77

Query: 59  VIDRSSRCQTCAGNMTECP---GHFGHIDLAKPVFHVGFVTK-----------TIKILRC 104
           +  R   C+ C   +          GHI+LA PV H+ F+             T++ +  
Sbjct: 78  LKHRGVICEKCGVEVALAKVRRERMGHIELASPVAHIWFLKSLPSRIGLLLDMTLRDIER 137

Query: 105 VCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAED 164
           V ++ S +++ P    +       KGQ    + +       + + E GD+ D  + GAE 
Sbjct: 138 VLYFESYVVIDPGMTTLE------KGQLLNDEQYF------EALEEFGDDFD-ARMGAEA 184

Query: 165 PNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHG 224
            + L N        GR           L  E    N +++ KK  L+ +  L+   QG G
Sbjct: 185 VHELLNAIDLEHEIGR-----------LREEIPQTNSETKIKK--LSKRLKLMEAFQGSG 231

Query: 225 GCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIR 284
               +          +      V        +PL G      DL      +I  NN L R
Sbjct: 232 NKPEW----------MVLTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKR 281

Query: 285 NESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGK-PLKAIKARLKGKEGRIR 343
                A   ++    +MLQ  V  L DN   G  RA+  S K PLK++   +KGK+GR R
Sbjct: 282 LLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG--RAITGSNKRPLKSLADMIKGKQGRFR 339

Query: 344 GNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
            NL+GKRVD+S R+VIT  P LR+ Q G+P+ +A  +  P I
Sbjct: 340 QNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFI 381


>sp|Q9HWC9|RPOC_PSEAE DNA-directed RNA polymerase subunit beta' OS=Pseudomonas aeruginosa
           (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
           GN=rpoC PE=3 SV=1
          Length = 1399

 Score = 94.7 bits (234), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 166/402 (41%), Gaps = 72/402 (17%)

Query: 16  VQFGILSPDEIRRMSVTEGGIKFPETM--EGGRPKLGGLMDPR---------------QG 58
           ++ G+ SP+ IR  S   G +K PET+     +P+  GL   +               + 
Sbjct: 20  IRIGLASPEMIRSWSF--GEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECLCGKYKR 77

Query: 59  VIDRSSRCQTCAGNMTECP---GHFGHIDLAKPVFHVGFVTK-----------TIKILRC 104
           +  R   C+ C   +          GHI+LA PV H+ F+             T++ +  
Sbjct: 78  LKHRGVICEKCGVEVALAKVRRERMGHIELASPVAHIWFLKSLPSRIGLLLDMTLRDIER 137

Query: 105 VCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAED 164
           V ++ S +++ P    +       KGQ    + +       + + E GD+ D  + GAE 
Sbjct: 138 VLYFESYVVIDPGMTTLE------KGQLLNDEQYF------EALEEFGDDFD-ARMGAEA 184

Query: 165 PNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHG 224
            + L N        GR           L  E    N +++ KK  L+ +  L+   QG G
Sbjct: 185 VHELLNAIDLEHEIGR-----------LREEIPQTNSETKIKK--LSKRLKLMEAFQGSG 231

Query: 225 GCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIR 284
               +          +      V        +PL G      DL      +I  NN L R
Sbjct: 232 NKPEW----------MVLTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKR 281

Query: 285 NESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGK-PLKAIKARLKGKEGRIR 343
                A   ++    +MLQ  V  L DN   G  RA+  S K PLK++   +KGK+GR R
Sbjct: 282 LLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG--RAITGSNKRPLKSLADMIKGKQGRFR 339

Query: 344 GNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
            NL+GKRVD+S R+VIT  P LR+ Q G+P+ +A  +  P I
Sbjct: 340 QNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFI 381


>sp|Q02T86|RPOC_PSEAB DNA-directed RNA polymerase subunit beta' OS=Pseudomonas aeruginosa
           (strain UCBPP-PA14) GN=rpoC PE=3 SV=1
          Length = 1399

 Score = 94.7 bits (234), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 166/402 (41%), Gaps = 72/402 (17%)

Query: 16  VQFGILSPDEIRRMSVTEGGIKFPETM--EGGRPKLGGLMDPR---------------QG 58
           ++ G+ SP+ IR  S   G +K PET+     +P+  GL   +               + 
Sbjct: 20  IRIGLASPEMIRSWSF--GEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECLCGKYKR 77

Query: 59  VIDRSSRCQTCAGNMTECP---GHFGHIDLAKPVFHVGFVTK-----------TIKILRC 104
           +  R   C+ C   +          GHI+LA PV H+ F+             T++ +  
Sbjct: 78  LKHRGVICEKCGVEVALAKVRRERMGHIELASPVAHIWFLKSLPSRIGLLLDMTLRDIER 137

Query: 105 VCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAED 164
           V ++ S +++ P    +       KGQ    + +       + + E GD+ D  + GAE 
Sbjct: 138 VLYFESYVVIDPGMTTLE------KGQLLNDEQYF------EALEEFGDDFD-ARMGAEA 184

Query: 165 PNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHG 224
            + L N        GR           L  E    N +++ KK  L+ +  L+   QG G
Sbjct: 185 VHELLNAIDLEHEIGR-----------LREEIPQTNSETKIKK--LSKRLKLMEAFQGSG 231

Query: 225 GCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIR 284
               +          +      V        +PL G      DL      +I  NN L R
Sbjct: 232 NKPEW----------MVLTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKR 281

Query: 285 NESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGK-PLKAIKARLKGKEGRIR 343
                A   ++    +MLQ  V  L DN   G  RA+  S K PLK++   +KGK+GR R
Sbjct: 282 LLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG--RAITGSNKRPLKSLADMIKGKQGRFR 339

Query: 344 GNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
            NL+GKRVD+S R+VIT  P LR+ Q G+P+ +A  +  P I
Sbjct: 340 QNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFI 381


>sp|Q12SW5|RPOC_SHEDO DNA-directed RNA polymerase subunit beta' OS=Shewanella
           denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
           GN=rpoC PE=3 SV=1
          Length = 1410

 Score = 94.0 bits (232), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 167/411 (40%), Gaps = 90/411 (21%)

Query: 16  VQFGILSPDEIRRMSVTEGGIKFPETM--EGGRPKLGGLMDPR---------------QG 58
           ++ G+ SPD IR  S   G +K PET+     +P+  GL   R               + 
Sbjct: 20  IKIGLASPDLIRSWSF--GEVKKPETINYRTFKPEREGLFCARIFGPVKDYECLCGKYKR 77

Query: 59  VIDRSSRCQTCAGNMTECP---GHFGHIDLAKPVFHVGFVTK-----------TIKILRC 104
           +  R   C+ C   +T+        GHIDLA PV H+ F+             T++ +  
Sbjct: 78  LKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSLPSRIGLMLDMTLRDIER 137

Query: 105 VCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAED 164
           V ++ S +++ P    +       +GQ    + ++        + E GDE +  K GAE 
Sbjct: 138 VLYFESFVVIEPGMTTLE------RGQMLTEETYL------DALEEYGDEFE-AKMGAEA 184

Query: 165 PNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHG 224
              L               N+      +  E   +N +++ KK+  T +  L+      G
Sbjct: 185 VLELLRA-----------INLEEQIEQMREELPSINSETRRKKV--TKRLKLMEAFFTSG 231

Query: 225 GCGRYQ---------PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADI 275
               +          P++R                     +PL G      DL      +
Sbjct: 232 NKPEWMILKVLPVLPPDLR-------------------PLVPLDGGRFATSDLNDLYRRV 272

Query: 276 IKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGK-PLKAIKAR 334
           I  NN L R     A   ++    +MLQ  V  L DN   G  RA+  S K PLK++   
Sbjct: 273 INRNNRLKRLLDLAAPDIIVRNEKRMLQESVDALLDNGRRG--RAITGSNKRPLKSLADM 330

Query: 335 LKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
           +KGK+GR R NL+GKRVD+S R+VIT  P LR+ Q G+P+ +A  +  P I
Sbjct: 331 IKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFI 381


>sp|Q089R0|RPOC_SHEFN DNA-directed RNA polymerase subunit beta' OS=Shewanella
           frigidimarina (strain NCIMB 400) GN=rpoC PE=3 SV=1
          Length = 1408

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 167/411 (40%), Gaps = 90/411 (21%)

Query: 16  VQFGILSPDEIRRMSVTEGGIKFPETM--EGGRPKLGGLMDPR---------------QG 58
           ++ G+ SPD IR  S   G +K PET+     +P+  GL   R               + 
Sbjct: 20  IKIGLASPDLIRSWSF--GEVKKPETINYRTFKPEREGLFCARIFGPVKDYECLCGKYKR 77

Query: 59  VIDRSSRCQTCAGNMTECP---GHFGHIDLAKPVFHVGFVTK-----------TIKILRC 104
           +  R   C+ C   +T+        GHIDLA PV H+ F+             T++ +  
Sbjct: 78  LKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSLPSRIGLMLDMTLRDIER 137

Query: 105 VCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAED 164
           V ++ S +++ P    +       +GQ    + ++        + E GDE +  K GAE 
Sbjct: 138 VLYFESFVVIEPGMTTLE------RGQMLTEETYL------DALEEYGDEFE-AKMGAEA 184

Query: 165 PNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHG 224
              L               N+      +  E   +N +++ KK+  T +  L+      G
Sbjct: 185 VLELLRA-----------INLAEQIEQMREELPSINSETRRKKV--TKRLKLMEAFFTSG 231

Query: 225 GCGRYQ---------PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADI 275
               +          P++R                     +PL G      DL      +
Sbjct: 232 NKPEWMILKVLPVLPPDLR-------------------PLVPLDGGRFATSDLNDLYRRV 272

Query: 276 IKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGK-PLKAIKAR 334
           I  NN L R     A   ++    +MLQ  V  L DN   G  RA+  S K PLK++   
Sbjct: 273 INRNNRLKRLLDLAAPDIIVRNEKRMLQESVDALLDNGRRG--RAITGSNKRPLKSLADM 330

Query: 335 LKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
           +KGK+GR R NL+GKRVD+S R+VIT  P LR+ Q G+P+ +A  +  P I
Sbjct: 331 IKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFI 381


>sp|P08968|RPC1_TRYBB DNA-directed RNA polymerase III subunit RPC1 OS=Trypanosoma brucei
           brucei PE=3 SV=1
          Length = 1530

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 75/125 (60%), Gaps = 5/125 (4%)

Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
           DDLT +  DI+   + +   + S  AT    E  +MLQ   A L D+ +PG P  ++ S 
Sbjct: 284 DDLTAQYNDILVSTDTM--QDGSLDATR-YTETWEMLQMRAARLLDSSLPGFPPNVRTSD 340

Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
             LK+   RLK K GR R NL GKRVD+S R+VI+PDPNL +D++ VP  +A+ +T+P+ 
Sbjct: 341 --LKSYAQRLKSKHGRFRCNLSGKRVDYSGRSVISPDPNLDVDELAVPLHVARVLTYPQR 398

Query: 386 VTPFN 390
           V   N
Sbjct: 399 VFKAN 403



 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 7/107 (6%)

Query: 8   APLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQ 67
           AP+  +  + +G+LS +++ R+SV       P     G  K  G+ D R GV DR S C+
Sbjct: 23  APVE-ISALHYGLLSRNDVHRLSV------LPCRRVVGDVKEYGVNDARLGVCDRLSICE 75

Query: 68  TCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLV 114
           TC  N  EC GH GHIDL  PVFH+GF T  ++I R +C  CS +L+
Sbjct: 76  TCGLNSIECVGHPGHIDLEAPVFHLGFFTTVLRICRTICKRCSHVLL 122


>sp|B0TM18|RPOC_SHEHH DNA-directed RNA polymerase subunit beta' OS=Shewanella
           halifaxensis (strain HAW-EB4) GN=rpoC PE=3 SV=1
          Length = 1404

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 167/407 (41%), Gaps = 82/407 (20%)

Query: 16  VQFGILSPDEIRRMSVTEGGIKFPETM--EGGRPKLGGLMDPR---------------QG 58
           ++ G+ SPD IR  S   G +K PET+     +P+  GL   R               + 
Sbjct: 20  IKIGLASPDLIRSWSF--GEVKKPETINYRTFKPEREGLFCARIFGPVKDYECLCGKYKR 77

Query: 59  VIDRSSRCQTCAGNMTECP---GHFGHIDLAKPVFHVGFVTK-----------TIKILRC 104
           +  R   C+ C   +T+        GHIDLA PV H+ F+             T++ +  
Sbjct: 78  LKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSLPSRIGLMLDMTLRDIER 137

Query: 105 VCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAED 164
           V ++ S +++ P    +       +GQ    + ++        + E GDE D  K GAE 
Sbjct: 138 VLYFESFVVIEPGMTSLE------RGQMLTEENYL------DALEEYGDEFD-AKMGAEA 184

Query: 165 PNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHG 224
              L               ++ +    +  E   +N +++ KK+    K V      G+ 
Sbjct: 185 VLELLRA-----------IDLEKEIEMMREELPSINSETRRKKVTKRLKLVEAFFTSGN- 232

Query: 225 GCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCN 279
                +P           EW       V        +PL G      DL      +I  N
Sbjct: 233 -----KP-----------EWMILKVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN 276

Query: 280 NELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGK-PLKAIKARLKGK 338
           N L R     A   ++    +MLQ  V  L DN   G  RA+  S K PLK++   +KGK
Sbjct: 277 NRLKRLLDLAAPDIIVRNEKRMLQESVDALLDNGRRG--RAITGSNKRPLKSLADMIKGK 334

Query: 339 EGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
           +GR R NL+GKRVD+S R+VIT  P LR+ Q G+P+ +A  +  P I
Sbjct: 335 QGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFI 381


>sp|A8G1F4|RPOC_SHESH DNA-directed RNA polymerase subunit beta' OS=Shewanella sediminis
           (strain HAW-EB3) GN=rpoC PE=3 SV=1
          Length = 1405

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 168/407 (41%), Gaps = 82/407 (20%)

Query: 16  VQFGILSPDEIRRMSVTEGGIKFPETM--EGGRPKLGGLMDPR---------------QG 58
           ++ G+ SPD IR  S   G +K PET+     +P+  GL   R               + 
Sbjct: 20  IKIGLASPDLIRSWSF--GEVKKPETINYRTFKPEREGLFCARIFGPVKDYECLCGKYKR 77

Query: 59  VIDRSSRCQTCAGNMTECP---GHFGHIDLAKPVFHVGFVTK-----------TIKILRC 104
           +  R   C+ C   +T+        GHIDLA PV H+ F+             T++ +  
Sbjct: 78  LKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSLPSRIGLMLDMTLRDIER 137

Query: 105 VCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAED 164
           V ++ S +++ P    +       +GQ    + ++        + E GDE +  K GAE 
Sbjct: 138 VLYFESFVVIEPGMTSLE------RGQMLTEENYL------DALEEYGDEFE-AKMGAEA 184

Query: 165 PNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHG 224
              L    +           + +    +  E   +N +++ KKI    K V    + G+ 
Sbjct: 185 VLELLRAIE-----------LEKEIEMMREELPSINSETRRKKITKRLKLVEAFFQSGN- 232

Query: 225 GCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCN 279
                +P           EW       V        +PL G      DL      +I  N
Sbjct: 233 -----KP-----------EWMILKVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN 276

Query: 280 NELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGK-PLKAIKARLKGK 338
           N L R     A   ++    +MLQ  V  L DN   G  RA+  S K PLK++   +KGK
Sbjct: 277 NRLKRLLDLAAPDIIVRNEKRMLQESVDALLDNGRRG--RAITGSNKRPLKSLADMIKGK 334

Query: 339 EGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
           +GR R NL+GKRVD+S R+VIT  P LR+ Q G+P+ +A  +  P I
Sbjct: 335 QGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFI 381


>sp|A8GYX0|RPOC_SHEPA DNA-directed RNA polymerase subunit beta' OS=Shewanella pealeana
           (strain ATCC 700345 / ANG-SQ1) GN=rpoC PE=3 SV=1
          Length = 1404

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 167/402 (41%), Gaps = 72/402 (17%)

Query: 16  VQFGILSPDEIRRMSVTEGGIKFPETM--EGGRPKLGGLMDPR---------------QG 58
           ++ G+ SPD IR  S   G +K PET+     +P+  GL   R               + 
Sbjct: 20  IKIGLASPDLIRSWSF--GEVKKPETINYRTFKPEREGLFCARIFGPVKDYECLCGKYKR 77

Query: 59  VIDRSSRCQTCAGNMTECP---GHFGHIDLAKPVFHVGFVTK-----------TIKILRC 104
           +  R   C+ C   +T+        GHIDLA PV H+ F+             T++ +  
Sbjct: 78  LKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSLPSRIGLMLDMTLRDIER 137

Query: 105 VCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAED 164
           V ++ S +++ P    +       +GQ    + ++        + E GDE D  K GAE 
Sbjct: 138 VLYFESFVVIEPGMTSLE------RGQMLTEENYL------DALEEYGDEFD-AKMGAEA 184

Query: 165 PNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHG 224
              L    +           + +    +  E   +N +++ KK+  T +  L+      G
Sbjct: 185 VLELLRAIE-----------LEKEIEMMREELPSINSETRRKKV--TKRLKLIEAFFTSG 231

Query: 225 GCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIR 284
               +          +  +   V        +PL G      DL      +I  NN L R
Sbjct: 232 NKPEW----------MILKVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKR 281

Query: 285 NESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGK-PLKAIKARLKGKEGRIR 343
                A   ++    +MLQ  V  L DN   G  RA+  S K PLK++   +KGK+GR R
Sbjct: 282 LLDLAAPDIIVRNEKRMLQESVDALLDNGRRG--RAITGSNKRPLKSLADMIKGKQGRFR 339

Query: 344 GNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
            NL+GKRVD+S R+VIT  P LR+ Q G+P+ +A  +  P I
Sbjct: 340 QNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFI 381


>sp|Q8EK73|RPOC_SHEON DNA-directed RNA polymerase subunit beta' OS=Shewanella oneidensis
           (strain MR-1) GN=rpoC PE=3 SV=1
          Length = 1405

 Score = 92.8 bits (229), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 168/411 (40%), Gaps = 90/411 (21%)

Query: 16  VQFGILSPDEIRRMSVTEGGIKFPETM--EGGRPKLGGLMDPR---------------QG 58
           ++ G+ SPD IR  S   G +K PET+     +P+  GL   R               + 
Sbjct: 20  IKIGLASPDLIRSWSF--GEVKKPETINYRTFKPEREGLFCARIFGPVKDYECLCGKYKR 77

Query: 59  VIDRSSRCQTCAGNMTECP---GHFGHIDLAKPVFHVGFVTK-----------TIKILRC 104
           +  R   C+ C   +T+        GHI+LA PV H+ F+             T++ +  
Sbjct: 78  LKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSLPSRIGLMLDMTLRDIER 137

Query: 105 VCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAED 164
           V ++ S +++ P    +       +GQ    + ++        + E GDE +  K GAE 
Sbjct: 138 VLYFESFVVIEPGMTSLE------RGQMLTEETYL------DALEEYGDEFE-AKMGAEA 184

Query: 165 PNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHG 224
              L               ++ +    +  E   +N +++ KK+  T +  L+      G
Sbjct: 185 VLELLRA-----------IDLEKEIEQMREELPSINSETRRKKV--TKRLKLMEAFHTSG 231

Query: 225 GCGRYQ---------PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADI 275
               +          P++R                     +PL G      DL      +
Sbjct: 232 NKPEWMILKVLPVLPPDLR-------------------PLVPLDGGRFATSDLNDLYRRV 272

Query: 276 IKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGK-PLKAIKAR 334
           I  NN L R     A   ++    +MLQ  V  L DN   G  RA+  S K PLK++   
Sbjct: 273 INRNNRLKRLLDLAAPDIIVRNEKRMLQESVDALLDNGRRG--RAITGSNKRPLKSLADM 330

Query: 335 LKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
           +KGK+GR R NL+GKRVD+S R+VIT  P LR+ Q G+P+ +A  +  P I
Sbjct: 331 IKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFI 381


>sp|B8CNC6|RPOC_SHEPW DNA-directed RNA polymerase subunit beta' OS=Shewanella
           piezotolerans (strain WP3 / JCM 13877) GN=rpoC PE=3 SV=1
          Length = 1404

 Score = 92.4 bits (228), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 168/407 (41%), Gaps = 82/407 (20%)

Query: 16  VQFGILSPDEIRRMSVTEGGIKFPETM--EGGRPKLGGLMDPR---------------QG 58
           ++ G+ SPD IR  S   G +K PET+     +P+  GL   R               + 
Sbjct: 20  IKIGLASPDLIRSWSF--GEVKKPETINYRTFKPEREGLFCARIFGPVKDYECLCGKYKR 77

Query: 59  VIDRSSRCQTCAGNMTECP---GHFGHIDLAKPVFHVGFVTK-----------TIKILRC 104
           +  R   C+ C   +T+        GHIDLA PV H+ F+             T++ +  
Sbjct: 78  LKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSLPSRIGLMLDMTLRDIER 137

Query: 105 VCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAED 164
           V ++ S +++ P    +       +GQ    + ++        + E GDE +  K GAE 
Sbjct: 138 VLYFESFVVIEPGMTSLE------RGQMLTEENYL------DALEEYGDEFE-AKMGAEA 184

Query: 165 PNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHG 224
              L    +           + +    +  E   +N +++ KKI    K +    + G+ 
Sbjct: 185 VLELLRAIE-----------LEKEIEMMREELPSINSETRRKKITKRLKLIEAFFQSGN- 232

Query: 225 GCGRYQPNIRRSGLDLTAEWK-----HVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCN 279
                +P           EW       V        +PL G      DL      +I  N
Sbjct: 233 -----KP-----------EWMILKVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN 276

Query: 280 NELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGK-PLKAIKARLKGK 338
           N L R     A   ++    +MLQ  V  L DN   G  RA+  S K PLK++   +KGK
Sbjct: 277 NRLKRLLDLAAPDIIVRNEKRMLQESVDALLDNGRRG--RAITGSNKRPLKSLADMIKGK 334

Query: 339 EGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
           +GR R NL+GKRVD+S R+VIT  P LR+ Q G+P+ +A  +  P I
Sbjct: 335 QGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFI 381


>sp|O55766|RPB1_IIV6 Probable DNA-directed RNA polymerase II subunit RPB1 homolog
           OS=Invertebrate iridescent virus 6 GN=IIV6-176R PE=3
           SV=1
          Length = 1026

 Score = 92.4 bits (228), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 62/91 (68%), Gaps = 2/91 (2%)

Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
           L+F + T  +N       A   +G+ +K ++ RL GKEG+IR NL+GKR + SARTVI P
Sbjct: 338 LKFRIETYCNNSQGKATHAT--TGRAIKGLRERLTGKEGQIRNNLLGKRCEMSARTVIGP 395

Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
           DP L+ID+V VP+ IAQ++TFP+ V   N+D
Sbjct: 396 DPTLKIDEVIVPKEIAQSLTFPDFVNKHNID 426



 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 73/124 (58%), Gaps = 5/124 (4%)

Query: 2   AMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVID 61
           A  + ++ ++ ++ + FG++S ++IR+MS  E  +K  +        L  + DP+ G I 
Sbjct: 3   ANNNMESEIKEIESISFGMMSSEDIRQMSSFE--VKTAKI--SSTNLLETVHDPKSGPIG 58

Query: 62  RSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKV 121
            S+ C+TC  N  +CPGHFGHI+L  P+ H  F+   + IL+  C+ C++ L++  H ++
Sbjct: 59  -SAPCETCHQNEWDCPGHFGHIELNVPIIHPLFINHVVNILKIFCWKCNEFLLTKDHLEL 117

Query: 122 RDVV 125
            +++
Sbjct: 118 NNIL 121


>sp|Q88QP1|RPOC_PSEPK DNA-directed RNA polymerase subunit beta' OS=Pseudomonas putida
           (strain KT2440) GN=rpoC PE=3 SV=1
          Length = 1399

 Score = 92.4 bits (228), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 167/417 (40%), Gaps = 90/417 (21%)

Query: 16  VQFGILSPDEIRRMSVTEGGIKFPETM--EGGRPKLGGLMDPR---------------QG 58
           ++ G+ SP+ IR  S   G +K PET+     +P+  GL   +               + 
Sbjct: 20  IRIGLASPEMIRSWSF--GEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECLCGKYKR 77

Query: 59  VIDRSSRCQTCAGNMTECP---GHFGHIDLAKPVFHVGFVTK-----------TIKILRC 104
           +  R   C+ C   +           HI+LA PV H+ F+             T++ +  
Sbjct: 78  LKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSLPSRIGLLMDMTLRDIER 137

Query: 105 VCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAED 164
           V ++ S +++ P    +       KGQ    + +       + + E GD+ D  + GAE 
Sbjct: 138 VLYFESYVVIDPGMTTLE------KGQLLNDEQYF------EALEEFGDDFD-ARMGAEA 184

Query: 165 PNSLQNKKQGHGGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHG 224
              L +        GR           L  E    N +++ KK  L+ +  L+   QG G
Sbjct: 185 VRELLHAIDLEHEIGR-----------LREEIPQTNSETKIKK--LSKRLKLMEAFQGSG 231

Query: 225 GCGRYQ---------PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADI 275
               +          P++R                     +PL G      DL      +
Sbjct: 232 NLPEWMVLTVLPVLPPDLR-------------------PLVPLDGGRFATSDLNDLYRRV 272

Query: 276 IKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGK-PLKAIKAR 334
           I  NN L R     A   ++    +MLQ  V  L DN   G  RA+  S K PLK++   
Sbjct: 273 INRNNRLKRLLDLSAPDIIVRNEKRMLQEAVDALLDNGRRG--RAITGSNKRPLKSLADM 330

Query: 335 LKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
           +KGK+GR R NL+GKRVD+S R+VIT  P LR+ Q G+P+ +A  +  P I     M
Sbjct: 331 IKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFIFGKLEM 387


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.137    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,428,947
Number of Sequences: 539616
Number of extensions: 7292801
Number of successful extensions: 16550
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 14408
Number of HSP's gapped (non-prelim): 1382
length of query: 392
length of database: 191,569,459
effective HSP length: 119
effective length of query: 273
effective length of database: 127,355,155
effective search space: 34767957315
effective search space used: 34767957315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)