Your job contains 1 sequence.
>psy3023
MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI
DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK
VRDVVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGR
YQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDL
TAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIK
MLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3023
(392 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0003277 - symbol:RpII215 "RNA polymerase II 215kD ... 917 8.8e-151 2
ZFIN|ZDB-GENE-041008-78 - symbol:polr2a "polymerase (RNA)... 1410 4.5e-144 1
UNIPROTKB|J9NW09 - symbol:POLR2A "DNA-directed RNA polyme... 1395 1.1e-142 1
UNIPROTKB|Q6NX41 - symbol:POLR2A "DNA-directed RNA polyme... 1395 1.1e-142 1
UNIPROTKB|I3LJR4 - symbol:POLR2A "DNA-directed RNA polyme... 1395 1.1e-142 1
UNIPROTKB|F1PGS0 - symbol:POLR2A "DNA-directed RNA polyme... 1395 2.6e-142 1
UNIPROTKB|G3MZY8 - symbol:POLR2A "DNA-directed RNA polyme... 1395 2.6e-142 1
UNIPROTKB|P24928 - symbol:POLR2A "DNA-directed RNA polyme... 1395 2.6e-142 1
MGI|MGI:98086 - symbol:Polr2a "polymerase (RNA) II (DNA d... 1395 2.6e-142 1
RGD|1587326 - symbol:Polr2a "polymerase (RNA) II (DNA dir... 1395 2.6e-142 1
WB|WBGene00000123 - symbol:ama-1 species:6239 "Caenorhabd... 704 6.7e-119 2
UNIPROTKB|P16356 - symbol:ama-1 "DNA-directed RNA polymer... 704 6.7e-119 2
DICTYBASE|DDB_G0279193 - symbol:rpb1 "RNA polymerase II c... 1005 2.6e-100 1
POMBASE|SPBC28F2.12 - symbol:rpb1 "RNA polymerase II larg... 935 8.9e-93 1
SGD|S000002299 - symbol:RPO21 "RNA polymerase II largest ... 484 1.5e-88 2
CGD|CAL0000919 - symbol:RPO21 species:5476 "Candida albic... 861 7.2e-85 1
UNIPROTKB|Q5ACI7 - symbol:RPO21 "DNA-directed RNA polymer... 861 7.2e-85 1
UNIPROTKB|G4MT89 - symbol:MGG_04652 "DNA-directed RNA pol... 826 4.2e-81 1
ASPGD|ASPL0000054301 - symbol:AN0809 species:162425 "Emer... 810 2.1e-79 1
ASPGD|ASPL0000047704 - symbol:AN10316 species:162425 "Eme... 320 2.6e-47 2
WB|WBGene00004411 - symbol:rpc-1 species:6239 "Caenorhabd... 312 3.0e-45 2
UNIPROTKB|E2QXD8 - symbol:POLR3A "DNA-directed RNA polyme... 288 1.2e-43 2
UNIPROTKB|J9P629 - symbol:POLR3A "DNA-directed RNA polyme... 288 1.2e-43 2
POMBASE|SPBC651.08c - symbol:rpc1 "DNA-directed RNA polym... 288 1.6e-43 2
UNIPROTKB|O14802 - symbol:POLR3A "DNA-directed RNA polyme... 288 1.9e-43 2
DICTYBASE|DDB_G0277199 - symbol:rpc1 "RNA polymerase III,... 465 9.6e-43 1
UNIPROTKB|A4IF62 - symbol:POLR3A "DNA-directed RNA polyme... 288 2.8e-42 2
UNIPROTKB|E9PTB6 - symbol:Polr3a "DNA-directed RNA polyme... 288 3.2e-42 2
UNIPROTKB|F1NIK7 - symbol:POLR3A "DNA-directed RNA polyme... 288 5.7e-42 2
UNIPROTKB|Q5ZL98 - symbol:POLR3A "DNA-directed RNA polyme... 288 5.7e-42 2
UNIPROTKB|F1S2E6 - symbol:POLR3A "DNA-directed RNA polyme... 287 1.8e-41 2
GENEDB_PFALCIPARUM|PF13_0150 - symbol:PF13_0150 "DNA-dire... 287 2.9e-40 2
UNIPROTKB|Q8IE49 - symbol:PF13_0150 "DNA-directed RNA pol... 287 2.9e-40 2
FB|FBgn0030687 - symbol:CG17209 species:7227 "Drosophila ... 282 1.2e-39 2
CGD|CAL0002215 - symbol:orf19.3103 species:5476 "Candida ... 261 2.2e-39 2
SGD|S000005642 - symbol:RPO31 "RNA polymerase III largest... 256 7.8e-39 2
ZFIN|ZDB-GENE-050208-103 - symbol:polr3a "polymerase (RNA... 284 1.7e-38 2
DICTYBASE|DDB_G0275759 - symbol:rpa1 "RNA polymerase I, l... 200 4.5e-26 2
CGD|CAL0001661 - symbol:RPA190 species:5476 "Candida albi... 184 6.0e-24 3
UNIPROTKB|G4NBX7 - symbol:MGG_01158 "DNA-directed RNA pol... 190 8.2e-24 2
FB|FBgn0019938 - symbol:RpI1 "RNA polymerase I subunit" s... 183 9.4e-23 2
POMBASE|SPBC4C3.05c - symbol:nuc1 "DNA-directed RNA polym... 175 3.9e-22 2
SGD|S000005868 - symbol:RPA190 "RNA polymerase I largest ... 177 1.9e-20 3
RGD|620824 - symbol:Polr1a "polymerase (RNA) I polypeptid... 166 2.2e-20 2
UNIPROTKB|G3V7B7 - symbol:Polr1a "DNA-directed RNA polyme... 166 2.2e-20 2
ZFIN|ZDB-GENE-030131-5286 - symbol:polr1a "polymerase (RN... 174 8.2e-20 2
UNIPROTKB|E1BIX2 - symbol:POLR1A "DNA-directed RNA polyme... 164 9.8e-20 2
UNIPROTKB|F1SVC3 - symbol:POLR1A "DNA-directed RNA polyme... 160 2.2e-19 2
MGI|MGI:1096397 - symbol:Polr1a "polymerase (RNA) I polyp... 159 2.8e-19 2
WB|WBGene00012999 - symbol:rpoa-1 species:6239 "Caenorhab... 165 8.6e-19 2
UNIPROTKB|B9ZVN9 - symbol:POLR1A "DNA-directed RNA polyme... 160 1.1e-18 2
UNIPROTKB|O95602 - symbol:POLR1A "DNA-directed RNA polyme... 160 1.2e-18 2
UNIPROTKB|J9P5G4 - symbol:POLR1A "DNA-directed RNA polyme... 159 1.2e-18 2
UNIPROTKB|E2R0G4 - symbol:POLR1A "DNA-directed RNA polyme... 159 1.2e-18 2
TAIR|locus:2076661 - symbol:NRPA1 "nuclear RNA polymerase... 157 3.8e-18 2
UNIPROTKB|F1LQN7 - symbol:Polr1a "DNA-directed RNA polyme... 166 1.4e-17 2
UNIPROTKB|Q9KV29 - symbol:rpoC "DNA-directed RNA polymera... 210 2.2e-16 3
TIGR_CMR|VC_0329 - symbol:VC_0329 "DNA-directed RNA polym... 210 2.2e-16 3
TIGR_CMR|SO_0225 - symbol:SO_0225 "DNA-directed RNA polym... 212 2.6e-16 3
TIGR_CMR|CHY_2317 - symbol:CHY_2317 "DNA-directed RNA pol... 202 1.5e-15 3
TIGR_CMR|BA_0103 - symbol:BA_0103 "DNA-directed RNA polym... 207 1.9e-15 3
TIGR_CMR|CPS_4768 - symbol:CPS_4768 "DNA-directed RNA pol... 206 3.4e-15 3
UNIPROTKB|P37871 - symbol:rpoC "DNA-directed RNA polymera... 202 9.2e-15 3
UNIPROTKB|P0A8T7 - symbol:rpoC "RNA polymerase, beta' sub... 209 2.0e-14 2
TIGR_CMR|SPO_3507 - symbol:SPO_3507 "DNA-directed RNA pol... 201 4.3e-13 2
UNIPROTKB|P0A674 - symbol:rpoC "DNA-directed RNA polymera... 198 5.0e-13 2
TIGR_CMR|CBU_0232 - symbol:CBU_0232 "DNA-directed RNA pol... 191 4.7e-12 2
TIGR_CMR|DET_0604 - symbol:DET_0604 "DNA-directed RNA pol... 185 7.5e-12 3
TIGR_CMR|CJE_0529 - symbol:CJE_0529 "DNA-directed RNA pol... 187 1.6e-11 2
TIGR_CMR|NSE_0677 - symbol:NSE_0677 "DNA-directed RNA pol... 174 6.8e-11 2
TIGR_CMR|ECH_0951 - symbol:ECH_0951 "DNA-directed RNA pol... 173 2.4e-10 2
TIGR_CMR|APH_1023 - symbol:APH_1023 "DNA-directed RNA pol... 172 3.0e-10 3
UNIPROTKB|P0C504 - symbol:rpoC1 "DNA-directed RNA polymer... 162 2.2e-08 2
UNIPROTKB|P0C505 - symbol:rpoC1 "DNA-directed RNA polymer... 162 2.2e-08 2
UNIPROTKB|P0C506 - symbol:rpoC1 "DNA-directed RNA polymer... 162 2.2e-08 2
UNIPROTKB|Q6ENI3 - symbol:rpoC1 "DNA-directed RNA polymer... 162 2.2e-08 2
TAIR|locus:2061151 - symbol:NRPD1B "nuclear RNA polymeras... 106 5.5e-06 2
TAIR|locus:2015163 - symbol:NRPD1A "nuclear RNA polymeras... 102 2.5e-05 2
>FB|FBgn0003277 [details] [associations]
symbol:RpII215 "RNA polymerase II 215kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS;NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0005700
"polytene chromosome" evidence=IDA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
PROSITE:PS00115 SMART:SM00663 GO:GO:0007095 GO:GO:0046872
GO:GO:0003677 EMBL:AE014298 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0005703 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 GeneTree:ENSGT00700000104490 OMA:KVLPWST KO:K03006
EMBL:M27431 EMBL:M14203 EMBL:M11798 EMBL:M19537 PIR:S04457
RefSeq:NP_511124.1 UniGene:Dm.2925 ProteinModelPortal:P04052
SMR:P04052 DIP:DIP-22282N IntAct:P04052 MINT:MINT-970158
STRING:P04052 PaxDb:P04052 EnsemblMetazoa:FBtr0073542 GeneID:32100
KEGG:dme:Dmel_CG1554 CTD:32100 FlyBase:FBgn0003277
InParanoid:P04052 OrthoDB:EOG4QRFJV PhylomeDB:P04052
GenomeRNAi:32100 NextBio:776837 Bgee:P04052 GermOnline:CG1554
Uniprot:P04052
Length = 1887
Score = 917 (327.9 bits), Expect = 8.8e-151, Sum P(2) = 8.8e-151
Identities = 164/212 (77%), Positives = 192/212 (90%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DSKAPLR VK+VQFGILSPDEIRRMSVTEGG++F ETMEGGRPKLGGLMDPRQGVIDR+S
Sbjct: 6 DSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTS 65
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHIDLAKPVFH+GF+TKTIKILRCVCFYCSK+LVSP +PK++++
Sbjct: 66 RCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEI 125
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAE-DPNSLQNKKQGHGGCGRYQP 183
V+K++GQ R+R A++YDLCKGK ICEGG++MD+ K+ + DPN KK GHGGCG YQP
Sbjct: 126 VMKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPN----KKPGHGGCGHYQP 181
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV 215
+IRR+GLDLTAEWKH NEDSQEKKI ++ + V
Sbjct: 182 SIRRTGLDLTAEWKHQNEDSQEKKIVVSAERV 213
Score = 600 (216.3 bits), Expect = 8.8e-151, Sum P(2) = 8.8e-151
Identities = 115/127 (90%), Positives = 122/127 (96%)
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
DDLTHKL+DIIK NNEL +NE+SGAA HVI ENIKMLQFHVATL DNDMPG+PRAMQKSG
Sbjct: 266 DDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKSG 325
Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN+TFPE+
Sbjct: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEL 385
Query: 386 VTPFNMD 392
VTPFN+D
Sbjct: 386 VTPFNID 392
Score = 196 (74.1 bits), Expect = 3.2e-74, Sum P(2) = 3.2e-74
Identities = 41/84 (48%), Positives = 54/84 (64%)
Query: 180 RYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD 239
R QP R + + + K + E ++ + + NKK GHGGCG YQP+IRR+GLD
Sbjct: 130 RGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIRRTGLD 189
Query: 240 LTAEWKHVNEDSQEKKIPLTGKGV 263
LTAEWKH NEDSQEKKI ++ + V
Sbjct: 190 LTAEWKHQNEDSQEKKIVVSAERV 213
>ZFIN|ZDB-GENE-041008-78 [details] [associations]
symbol:polr2a "polymerase (RNA) II (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 ZFIN:ZDB-GENE-041008-78 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0005665 GeneTree:ENSGT00700000104490 EMBL:AL929346
IPI:IPI00608319 Ensembl:ENSDART00000077495 Bgee:F1Q9K4
Uniprot:F1Q9K4
Length = 1965
Score = 1410 (501.4 bits), Expect = 4.5e-144, P = 4.5e-144
Identities = 270/394 (68%), Positives = 318/394 (80%)
Query: 4 ADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRS 63
+DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+RS
Sbjct: 7 SDSACPLRLIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERS 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+TK +K+LRCVCF+CSKLLV ++PK++D
Sbjct: 67 GRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDANNPKIKD 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQ-NKKQGHGGCGRYQ 182
++ K+KGQ R+R +YDLCKGKNICEGG+EMD NK G E P S K++GHGGCGRYQ
Sbjct: 127 ILTKSKGQPRKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPESEDITKEKGHGGCGRYQ 185
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGV--LLNKKQGHGGC--GRYQPNIRRSGL 238
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + + G R +
Sbjct: 186 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRIADEEDIILGMDPKYARPEWM 245
Query: 239 DLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
+T V + + + G DDLTHKLADI+K NN+L RNE SGAA HVIAE+
Sbjct: 246 IVTV--LPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLKRNEQSGAAAHVIAED 303
Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
+K+LQFHVAT+ DN++PGLPRAMQKSG+PLK+IK RLKGKEGR+RGNLMGKRVDFSARTV
Sbjct: 304 VKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTV 363
Query: 359 ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
ITPDPNL+IDQVGVPRSIA NMTFPEIVTPFN+D
Sbjct: 364 ITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNID 397
>UNIPROTKB|J9NW09 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 EMBL:AAEX03003616 EMBL:AAEX03003617
Ensembl:ENSCAFT00000050029 Uniprot:J9NW09
Length = 1789
Score = 1395 (496.1 bits), Expect = 1.1e-142, P = 1.1e-142
Identities = 266/393 (67%), Positives = 317/393 (80%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCG--RYQPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248
Query: 240 LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENI 299
+ V S + + G DDLTHKLADI+K NN+L RNE +GAA HVIAE++
Sbjct: 249 IVTVLP-VPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDV 307
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFSARTVI
Sbjct: 308 KLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVI 367
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 368 TPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>UNIPROTKB|Q6NX41 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AC113189 GO:GO:0003899 IPI:IPI00031627
UniGene:Hs.270017 HGNC:HGNC:9187 ChiTaRS:POLR2A EMBL:BC067295
SMR:Q6NX41 STRING:Q6NX41 Ensembl:ENST00000572844 UCSC:uc002ghe.3
HOVERGEN:HBG097653 Uniprot:Q6NX41
Length = 566
Score = 1395 (496.1 bits), Expect = 1.1e-142, P = 1.1e-142
Identities = 266/393 (67%), Positives = 317/393 (80%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCG--RYQPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248
Query: 240 LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENI 299
+ V S + + G DDLTHKLADI+K NN+L RNE +GAA HVIAE++
Sbjct: 249 IVTVLP-VPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDV 307
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFSARTVI
Sbjct: 308 KLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVI 367
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 368 TPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>UNIPROTKB|I3LJR4 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04992
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GeneTree:ENSGT00700000104490 EMBL:FP565284
Ensembl:ENSSSCT00000029425 Uniprot:I3LJR4
Length = 1010
Score = 1395 (496.1 bits), Expect = 1.1e-142, P = 1.1e-142
Identities = 266/393 (67%), Positives = 317/393 (80%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCG--RYQPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248
Query: 240 LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENI 299
+ V S + + G DDLTHKLADI+K NN+L RNE +GAA HVIAE++
Sbjct: 249 IVTVLP-VPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDV 307
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFSARTVI
Sbjct: 308 KLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVI 367
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 368 TPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>UNIPROTKB|F1PGS0 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:AAEX03003616
EMBL:AAEX03003617 Ensembl:ENSCAFT00000026237 Uniprot:F1PGS0
Length = 1969
Score = 1395 (496.1 bits), Expect = 2.6e-142, P = 2.6e-142
Identities = 266/393 (67%), Positives = 317/393 (80%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCG--RYQPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248
Query: 240 LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENI 299
+ V S + + G DDLTHKLADI+K NN+L RNE +GAA HVIAE++
Sbjct: 249 IVTVLP-VPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDV 307
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFSARTVI
Sbjct: 308 KLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVI 367
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 368 TPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>UNIPROTKB|G3MZY8 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:DAAA02048777
EMBL:DAAA02048778 EMBL:DAAA02048779 EMBL:DAAA02048780
EMBL:DAAA02048781 Ensembl:ENSBTAT00000064788 Uniprot:G3MZY8
Length = 1970
Score = 1395 (496.1 bits), Expect = 2.6e-142, P = 2.6e-142
Identities = 266/393 (67%), Positives = 317/393 (80%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCG--RYQPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248
Query: 240 LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENI 299
+ V S + + G DDLTHKLADI+K NN+L RNE +GAA HVIAE++
Sbjct: 249 IVTVLP-VPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDV 307
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFSARTVI
Sbjct: 308 KLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVI 367
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 368 TPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>UNIPROTKB|P24928 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003677 "DNA binding" evidence=NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0006366
"transcription from RNA polymerase II promoter"
evidence=IDA;NAS;TAS] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IDA] [GO:0004672 "protein kinase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0031625 "ubiquitin protein ligase binding" evidence=IPI]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 Reactome:REACT_116125
EMBL:CH471108 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006367 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 EMBL:AC113189 GO:GO:0003899 PDB:2GHQ PDB:2GHT
PDBsum:2GHQ PDBsum:2GHT eggNOG:COG0086 GO:GO:0003968 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X63564 EMBL:X74874
EMBL:X74873 EMBL:X74872 EMBL:X74871 EMBL:X74870 EMBL:BC137231
IPI:IPI00031627 PIR:I38186 PIR:S21054 RefSeq:NP_000928.1
UniGene:Hs.270017 PDB:2LTO PDBsum:2LTO ProteinModelPortal:P24928
SMR:P24928 DIP:DIP-29011N IntAct:P24928 MINT:MINT-156582
STRING:P24928 PhosphoSite:P24928 DMDM:281185484 PaxDb:P24928
PRIDE:P24928 Ensembl:ENST00000322644 GeneID:5430 KEGG:hsa:5430
UCSC:uc002ghf.4 CTD:5430 GeneCards:GC17P007387 H-InvDB:HIX0173727
HGNC:HGNC:9187 HPA:CAB012226 HPA:CAB016388 HPA:CAB022311
HPA:HPA021563 MIM:180660 neXtProt:NX_P24928 PharmGKB:PA33507
HOVERGEN:HBG004339 InParanoid:P24928 OrthoDB:EOG4JWVCM
BindingDB:P24928 ChEMBL:CHEMBL1641353 ChiTaRS:POLR2A
EvolutionaryTrace:P24928 GenomeRNAi:5430 NextBio:21009
ArrayExpress:P24928 Bgee:P24928 CleanEx:HS_POLR2A
Genevestigator:P24928 GermOnline:ENSG00000181222 Uniprot:P24928
Length = 1970
Score = 1395 (496.1 bits), Expect = 2.6e-142, P = 2.6e-142
Identities = 266/393 (67%), Positives = 317/393 (80%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCG--RYQPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248
Query: 240 LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENI 299
+ V S + + G DDLTHKLADI+K NN+L RNE +GAA HVIAE++
Sbjct: 249 IVTVLP-VPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDV 307
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFSARTVI
Sbjct: 308 KLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVI 367
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 368 TPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>MGI|MGI:98086 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide
A" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 MGI:MGI:98086
GO:GO:0046872 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
EMBL:AL603707 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 CTD:5430
HOVERGEN:HBG004339 OrthoDB:EOG4JWVCM ChiTaRS:POLR2A EMBL:M12130
EMBL:M14101 IPI:IPI00136207 PIR:A28490 RefSeq:NP_033115.1
UniGene:Mm.16533 DisProt:DP00181 ProteinModelPortal:P08775
SMR:P08775 DIP:DIP-46369N IntAct:P08775 STRING:P08775
PhosphoSite:P08775 PaxDb:P08775 PRIDE:P08775
Ensembl:ENSMUST00000058470 Ensembl:ENSMUST00000071213 GeneID:20020
KEGG:mmu:20020 UCSC:uc007jrj.1 InParanoid:Q5F298 NextBio:297535
Bgee:P08775 CleanEx:MM_POLR2A Genevestigator:P08775
GermOnline:ENSMUSG00000005198 Uniprot:P08775
Length = 1970
Score = 1395 (496.1 bits), Expect = 2.6e-142, P = 2.6e-142
Identities = 266/393 (67%), Positives = 317/393 (80%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCG--RYQPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248
Query: 240 LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENI 299
+ V S + + G DDLTHKLADI+K NN+L RNE +GAA HVIAE++
Sbjct: 249 IVTVLP-VPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDV 307
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFSARTVI
Sbjct: 308 KLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVI 367
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 368 TPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>RGD|1587326 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 RGD:1587326 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 KO:K03006 CTD:5430 OrthoDB:EOG4JWVCM
IPI:IPI00952328 RefSeq:XP_001079162.1 RefSeq:XP_343923.3
UniGene:Rn.163136 Ensembl:ENSRNOT00000068013 GeneID:363633
KEGG:rno:363633 UCSC:RGD:1587326 NextBio:683839 ArrayExpress:D4A5A6
Uniprot:D4A5A6
Length = 1970
Score = 1395 (496.1 bits), Expect = 2.6e-142, P = 2.6e-142
Identities = 266/393 (67%), Positives = 317/393 (80%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
DS PLR +K+VQFG+LSPDE++RMSVTEGGIK+PET EGGRPKLGGLMDPRQGVI+R+
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RCQTCAGNMTECPGHFGHI+LAKPVFHVGF+ KT+K+LRCVCF+CSKLLV ++PK++D+
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQN--KKQGHGGCGRYQ 182
+ K+KGQ ++R +YDLCKGKNICEGG+EMD NK G E P ++ K++GHGGCGRYQ
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMD-NKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 183 PNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL-LNKKQGHGGCG--RYQPNIRRSGLD 239
P IRRSGL+L AEWKHVNEDSQEKKI L+ + V + K+ C +P R
Sbjct: 189 PRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248
Query: 240 LTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENI 299
+ V S + + G DDLTHKLADI+K NN+L RNE +GAA HVIAE++
Sbjct: 249 IVTVLP-VPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDV 307
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
K+LQFHVAT+ DN++PGLPRAMQKSG+PLK++K RLKGKEGR+RGNLMGKRVDFSARTVI
Sbjct: 308 KLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVI 367
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
TPDPNL IDQVGVPRSIA NMTF EIVTPFN+D
Sbjct: 368 TPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400
>WB|WBGene00000123 [details] [associations]
symbol:ama-1 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0010458 "exit from mitosis" evidence=IMP]
[GO:0008356 "asymmetric cell division" evidence=IMP] [GO:0032502
"developmental process" evidence=IMP] [GO:0006479 "protein
methylation" evidence=IMP] [GO:0007369 "gastrulation" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0001055 "RNA polymerase II
activity" evidence=IMP] [GO:0042789 "mRNA transcription from RNA
polymerase II promoter" evidence=IMP] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 GO:GO:0005634
GO:GO:0009792 GO:GO:0040010 GO:GO:0007052 GO:GO:0010458
GO:GO:0046872 GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006479 GO:GO:0008356 GO:GO:0007369
GO:GO:0042789 EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665
EMBL:M29235 PIR:A34092 PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356
STRING:P16356 PaxDb:P16356 EnsemblMetazoa:F36A4.7.1
EnsemblMetazoa:F36A4.7.2 GeneID:177190 KEGG:cel:CELE_F36A4.7
UCSC:F36A4.7 CTD:247749 WormBase:F36A4.7
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975 InParanoid:P16356
OMA:KVLPWST NextBio:895720 GO:GO:0001055 Uniprot:P16356
Length = 1856
Score = 704 (252.9 bits), Expect = 6.7e-119, Sum P(2) = 6.7e-119
Identities = 129/214 (60%), Positives = 165/214 (77%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
D +APLR V +VQFGIL P+EI+RMSV ++FPE E G+PKLGGLMDPRQGVIDR
Sbjct: 7 DFQAPLRIVSRVQFGILGPEEIKRMSVAH--VEFPEVYENGKPKLGGLMDPRQGVIDRRG 64
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RC TCAGN+T+CPGHFGH++LAKPVFH+GF+TKT+KILRCVCFYC +LL+ S P+V ++
Sbjct: 65 RCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEI 124
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINK-DGAEDPNSLQNKKQGHGGCGRYQP 183
+ KT S++R IYDLCK K++CEG E + D +DP + + K+ GGCGRYQP
Sbjct: 125 LKKTGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDP--MNDGKKVAGGCGRYQP 182
Query: 184 NIRRSGLDLTAEWK-HVNEDSQEKKIPLTGKGVL 216
+ RR G+D+ AEWK +VNED+QE+KI LT + VL
Sbjct: 183 SYRRVGIDINAEWKKNVNEDTQERKIMLTAERVL 216
Score = 514 (186.0 bits), Expect = 6.7e-119, Sum P(2) = 6.7e-119
Identities = 97/127 (76%), Positives = 113/127 (88%)
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
DDLTHKL+DIIK N +L RNE++GAA HV+ +++++LQFHVATL DN +PGLP A QK G
Sbjct: 268 DDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPTATQKGG 327
Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
+PLK+IK RLKGKEGRIRGNLMGKRVDFSARTVIT DPNL ID VGVPR+IAQN+TFPEI
Sbjct: 328 RPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEI 387
Query: 386 VTPFNMD 392
VTPFN+D
Sbjct: 388 VTPFNVD 394
Score = 154 (59.3 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 35/71 (49%), Positives = 48/71 (67%)
Query: 197 KHVNEDSQEKK--IPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-HVNEDSQE 253
K V E + EK+ +P + + K+ GGCGRYQP+ RR G+D+ AEWK +VNED+QE
Sbjct: 146 KSVCEGAAEKEEGMPDDPDDPMNDGKKVAGGCGRYQPSYRRVGIDINAEWKKNVNEDTQE 205
Query: 254 KKIPLTGKGVL 264
+KI LT + VL
Sbjct: 206 RKIMLTAERVL 216
>UNIPROTKB|P16356 [details] [associations]
symbol:ama-1 "DNA-directed RNA polymerase II subunit RPB1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0007052 GO:GO:0010458 GO:GO:0046872
GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0006479 GO:GO:0008356 GO:GO:0007369 GO:GO:0042789
EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665 EMBL:M29235 PIR:A34092
PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356 STRING:P16356
PaxDb:P16356 EnsemblMetazoa:F36A4.7.1 EnsemblMetazoa:F36A4.7.2
GeneID:177190 KEGG:cel:CELE_F36A4.7 UCSC:F36A4.7 CTD:247749
WormBase:F36A4.7 GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975
InParanoid:P16356 OMA:KVLPWST NextBio:895720 GO:GO:0001055
Uniprot:P16356
Length = 1856
Score = 704 (252.9 bits), Expect = 6.7e-119, Sum P(2) = 6.7e-119
Identities = 129/214 (60%), Positives = 165/214 (77%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
D +APLR V +VQFGIL P+EI+RMSV ++FPE E G+PKLGGLMDPRQGVIDR
Sbjct: 7 DFQAPLRIVSRVQFGILGPEEIKRMSVAH--VEFPEVYENGKPKLGGLMDPRQGVIDRRG 64
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
RC TCAGN+T+CPGHFGH++LAKPVFH+GF+TKT+KILRCVCFYC +LL+ S P+V ++
Sbjct: 65 RCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEI 124
Query: 125 VLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINK-DGAEDPNSLQNKKQGHGGCGRYQP 183
+ KT S++R IYDLCK K++CEG E + D +DP + + K+ GGCGRYQP
Sbjct: 125 LKKTGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDP--MNDGKKVAGGCGRYQP 182
Query: 184 NIRRSGLDLTAEWK-HVNEDSQEKKIPLTGKGVL 216
+ RR G+D+ AEWK +VNED+QE+KI LT + VL
Sbjct: 183 SYRRVGIDINAEWKKNVNEDTQERKIMLTAERVL 216
Score = 514 (186.0 bits), Expect = 6.7e-119, Sum P(2) = 6.7e-119
Identities = 97/127 (76%), Positives = 113/127 (88%)
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
DDLTHKL+DIIK N +L RNE++GAA HV+ +++++LQFHVATL DN +PGLP A QK G
Sbjct: 268 DDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPTATQKGG 327
Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
+PLK+IK RLKGKEGRIRGNLMGKRVDFSARTVIT DPNL ID VGVPR+IAQN+TFPEI
Sbjct: 328 RPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEI 387
Query: 386 VTPFNMD 392
VTPFN+D
Sbjct: 388 VTPFNVD 394
Score = 154 (59.3 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 35/71 (49%), Positives = 48/71 (67%)
Query: 197 KHVNEDSQEKK--IPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDLTAEWK-HVNEDSQE 253
K V E + EK+ +P + + K+ GGCGRYQP+ RR G+D+ AEWK +VNED+QE
Sbjct: 146 KSVCEGAAEKEEGMPDDPDDPMNDGKKVAGGCGRYQPSYRRVGIDINAEWKKNVNEDTQE 205
Query: 254 KKIPLTGKGVL 264
+KI LT + VL
Sbjct: 206 RKIMLTAERVL 216
>DICTYBASE|DDB_G0279193 [details] [associations]
symbol:rpb1 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 dictyBase:DDB_G0279193
GO:GO:0006355 GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000030 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
OMA:KVLPWST EMBL:S52651 PIR:A56823 RefSeq:XP_641735.1 STRING:P35084
PRIDE:P35084 EnsemblProtists:DDB0215406 GeneID:8621932
KEGG:ddi:DDB_G0279193 KO:K03006 ProtClustDB:CLSZ2428993
Uniprot:P35084
Length = 1727
Score = 1005 (358.8 bits), Expect = 2.6e-100, P = 2.6e-100
Identities = 209/390 (53%), Positives = 257/390 (65%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSR 65
S A LR VK+VQFGILSPDEIR MSV ++ PET E G+PK GGL+DP G ID++ R
Sbjct: 8 SSAELRKVKRVQFGILSPDEIRNMSVAR--VEHPETYENGKPKAGGLLDPAMGTIDKTQR 65
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVV 125
CQTC+G M ECPGHFGHI+LAKPVFH+GF+ +KILRCVC++CSKLL + R
Sbjct: 66 CQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDTNEHSFRQA- 124
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNI 185
LK + Q R A + D CK K +C G E + D ++ L +K HGGCG P I
Sbjct: 125 LKIRNQKHRLNAVV-DCCKNKKVCAIGGEEEEEHDLSKTDEEL-DKPVKHGGCGNVLPKI 182
Query: 186 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVL--LNK-KQGHGGCGRYQPNIRRSGLDLTA 242
+ L + E+K V ++S EKK L+ + VL L + K P+ R+ + A
Sbjct: 183 TKEDLKIIVEFKDVTDESIEKKSVLSAERVLNILKRIKDEDSRAMGINPDWARADW-MIA 241
Query: 243 EWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKML 302
V I + DDLTHKLADI+K N EL R E +GA H+IAE + L
Sbjct: 242 TVLPVPPPPVRPSIMMDTSTRGEDDLTHKLADIVKANRELQRQEKNGAPAHIIAEATQFL 301
Query: 303 QFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD 362
QFHVAT DN++PGLP+A Q+SG+PLK+I+ RLKGKEGRIRGNLMGKRVDFSARTVIT D
Sbjct: 302 QFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITAD 361
Query: 363 PNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
PNL IDQVGVPRSIA N+T+PE VTPFN+D
Sbjct: 362 PNLSIDQVGVPRSIALNLTYPETVTPFNID 391
>POMBASE|SPBC28F2.12 [details] [associations]
symbol:rpb1 "RNA polymerase II large subunit Rpb1"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IC] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IC] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 PomBase:SPBC28F2.12 GO:GO:0005829
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 PDB:3H0G PDBsum:3H0G
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X56564 PIR:S26849
RefSeq:NP_595673.1 ProteinModelPortal:P36594 IntAct:P36594
MINT:MINT-1214221 STRING:P36594 EnsemblFungi:SPBC28F2.12.1
GeneID:2540292 KEGG:spo:SPBC28F2.12 OrthoDB:EOG4J14H5
EvolutionaryTrace:P36594 NextBio:20801422 Uniprot:P36594
Length = 1752
Score = 935 (334.2 bits), Expect = 8.9e-93, P = 8.9e-93
Identities = 195/393 (49%), Positives = 258/393 (65%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
S PLR V++VQFGILSP+EIR MSV + I+FPETM+ G RP++GGL+DPR G IDR
Sbjct: 9 SSVPLRRVEEVQFGILSPEEIRSMSVAK--IEFPETMDESGQRPRVGGLLDPRLGTIDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M +CPGHFGHI+LAKPVFH+GF++K KIL CVC+ C KL + S+PK D
Sbjct: 67 FKCQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPKFND 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ + R A ++++CK K +C+ G + D + N N GHGGCG QP
Sbjct: 127 TQ-RYRDPKNRLNA-VWNVCKTKMVCDTG--LSAGSDNFDLSNPSAN--MGHGGCGAAQP 180
Query: 184 NIRRSGLDLTAEWKHVNEDSQ--EKKI--PLTGKGVLLN-KKQGHGGCGRYQPNIRRSGL 238
IR+ GL L WK ++S EK++ PL + + + G + R +
Sbjct: 181 TIRKDGLRLWGSWKRGKDESDLPEKRLLSPLEVHTIFTHISSEDLAHLGLNEQYARPDWM 240
Query: 239 DLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAEN 298
+T V S I + G DDLTHKL+DIIK N + R E GA H+++E
Sbjct: 241 IITV--LPVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSEY 298
Query: 299 IKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
++LQFHVAT DN++ G P+A+QKSG+PLK+I+ARLKGKEGR+RGNLMGKRVDFSARTV
Sbjct: 299 EQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTV 358
Query: 359 ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
IT DPNL +D++GVPRSIA+ +T+PE VTP+N+
Sbjct: 359 ITGDPNLSLDELGVPRSIAKTLTYPETVTPYNI 391
>SGD|S000002299 [details] [associations]
symbol:RPO21 "RNA polymerase II largest subunit B220"
species:4932 "Saccharomyces cerevisiae" [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA;IMP] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 SGD:S000002299 GO:GO:0005739
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:X96876 EMBL:U27182
GO:GO:0003899 PDB:4GWQ PDBsum:4GWQ PDB:2LO6 PDBsum:2LO6
eggNOG:COG0086 GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50
PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV
PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA
PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM
PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63
PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5
PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT
PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92
PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI
PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM
PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU
PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ
PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y
PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD
PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16 PDBsum:3S17
PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D
PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E
PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K
PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
EMBL:X03128 EMBL:Z74188 PIR:S67686 RefSeq:NP_010141.1 PDB:2L0I
PDBsum:2L0I ProteinModelPortal:P04050 SMR:P04050 DIP:DIP-611N
IntAct:P04050 MINT:MINT-432838 STRING:P04050 PaxDb:P04050
PeptideAtlas:P04050 EnsemblFungi:YDL140C GeneID:851415
KEGG:sce:YDL140C CYGD:YDL140c GeneTree:ENSGT00700000105212
EvolutionaryTrace:P04050 NextBio:968606 ArrayExpress:P04050
Genevestigator:P04050 GermOnline:YDL140C Uniprot:P04050
Length = 1733
Score = 484 (175.4 bits), Expect = 1.5e-88, Sum P(2) = 1.5e-88
Identities = 103/217 (47%), Positives = 135/217 (62%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+ SP+E+R +SV + I+FPETM+ R K+GGL DPR G IDR+
Sbjct: 7 SSAPLRTVKEVQFGLFSPEEVRAISVAK--IRFPETMDETQTRAKIGGLNDPRLGSIDRN 64
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
+CQTC M ECPGHFGHIDLAKPVFHVGF+ K K+ CVC +C KLL+ H ++
Sbjct: 65 LKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLD-EHNELMR 123
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L K S++R A I+ LCK K +CE D+ + +DP L ++ GGCG QP
Sbjct: 124 QALAIK-DSKKRFAAIWTLCKTKMVCE----TDVPSE--DDPTQLVSR----GGCGNTQP 172
Query: 184 NIRRSGLDLTAEWK--HVNEDSQEKKIPLTGKGVLLN 218
IR+ GL L WK D+ E ++ + +LN
Sbjct: 173 TIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILN 209
Score = 448 (162.8 bits), Expect = 1.5e-88, Sum P(2) = 1.5e-88
Identities = 86/127 (67%), Positives = 105/127 (82%)
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
DDLT KLADI+K N L E +GA H I E +LQFHVAT DND+ G P+A+QKSG
Sbjct: 260 DDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSG 319
Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
+P+K+I+ARLKGKEGRIRGNLMGKRVDFSARTVI+ DPNL +DQVGVP+SIA+ +T+PE+
Sbjct: 320 RPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEV 379
Query: 386 VTPFNMD 392
VTP+N+D
Sbjct: 380 VTPYNID 386
Score = 82 (33.9 bits), Expect = 3.5e-46, Sum P(2) = 3.5e-46
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 224 GGCGRYQPNIRRSGLDLTAEWK--HVNEDSQEKKIPLTGKGVLLDDLTH 270
GGCG QP IR+ GL L WK D+ E ++ + +L+ H
Sbjct: 165 GGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKH 213
>CGD|CAL0000919 [details] [associations]
symbol:RPO21 species:5476 "Candida albicans" [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 CGD:CAL0000919
GO:GO:0071216 GO:GO:0036180 GO:GO:0003677 GO:GO:0006366
GO:GO:0009267 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1 STRING:Q5ACI7
GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 861 (308.1 bits), Expect = 7.2e-85, P = 7.2e-85
Identities = 194/397 (48%), Positives = 254/397 (63%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+LSP+E+R +SV + I++PETM+ RP+ GGL DPR G IDR+
Sbjct: 8 SSAPLRSVKEVQFGLLSPEEVRAISVAK--IEYPETMDQTTKRPREGGLNDPRLGSIDRN 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RCQTC +M ECPGHFGHI+LAKPVFH+GF+ K K VC +C KLL+ ++P +
Sbjct: 66 FRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHCGKLLLDETNPAMAQ 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ K + +R A ++ LCK K +CE D N+D D S GGCG QP
Sbjct: 126 AI-KIRDPKKRFNA-VWSLCKTKMVCE----TDNNEDEMTDQPS-------RGGCGHPQP 172
Query: 184 NIRRSGLDLTAEWK---HVNEDSQEKKIPLTGKGVL-LNKKQGHGGC---GRYQPNIRRS 236
IRR GL L WK + +++ Q ++ LT +L + K C G + R
Sbjct: 173 TIRRDGLKLWGTWKQNKNYDDNDQPERRLLTPSEILNVFKHISPEDCYKMGFNEDYARPE 232
Query: 237 GLDLTAEWKHVNEDSQEKKIPL--TGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
+ +T V I T +G DDLT KLADIIK N + R E+ G+ HV
Sbjct: 233 WMLITV--LPVPPPPVRPSIAFNETARGE--DDLTFKLADIIKANINVQRLETDGSPQHV 288
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I+E +LQFHVAT DND+ G P+A+QK+G+P+K+I+ARLKGKEGR+RGNLMGKRVDFS
Sbjct: 289 ISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFS 348
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
ARTVI+ DPNL +DQVGVP SIA+ +T+PEIVTP+N+
Sbjct: 349 ARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNI 385
>UNIPROTKB|Q5ACI7 [details] [associations]
symbol:RPO21 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 CGD:CAL0000919 GO:GO:0071216 GO:GO:0036180
GO:GO:0003677 GO:GO:0006366 GO:GO:0009267 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1
STRING:Q5ACI7 GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 861 (308.1 bits), Expect = 7.2e-85, P = 7.2e-85
Identities = 194/397 (48%), Positives = 254/397 (63%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPRQGVIDRS 63
S APLR VK+VQFG+LSP+E+R +SV + I++PETM+ RP+ GGL DPR G IDR+
Sbjct: 8 SSAPLRSVKEVQFGLLSPEEVRAISVAK--IEYPETMDQTTKRPREGGLNDPRLGSIDRN 65
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
RCQTC +M ECPGHFGHI+LAKPVFH+GF+ K K VC +C KLL+ ++P +
Sbjct: 66 FRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHCGKLLLDETNPAMAQ 125
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
+ K + +R A ++ LCK K +CE D N+D D S GGCG QP
Sbjct: 126 AI-KIRDPKKRFNA-VWSLCKTKMVCE----TDNNEDEMTDQPS-------RGGCGHPQP 172
Query: 184 NIRRSGLDLTAEWK---HVNEDSQEKKIPLTGKGVL-LNKKQGHGGC---GRYQPNIRRS 236
IRR GL L WK + +++ Q ++ LT +L + K C G + R
Sbjct: 173 TIRRDGLKLWGTWKQNKNYDDNDQPERRLLTPSEILNVFKHISPEDCYKMGFNEDYARPE 232
Query: 237 GLDLTAEWKHVNEDSQEKKIPL--TGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHV 294
+ +T V I T +G DDLT KLADIIK N + R E+ G+ HV
Sbjct: 233 WMLITV--LPVPPPPVRPSIAFNETARGE--DDLTFKLADIIKANINVQRLETDGSPQHV 288
Query: 295 IAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354
I+E +LQFHVAT DND+ G P+A+QK+G+P+K+I+ARLKGKEGR+RGNLMGKRVDFS
Sbjct: 289 ISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFS 348
Query: 355 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
ARTVI+ DPNL +DQVGVP SIA+ +T+PEIVTP+N+
Sbjct: 349 ARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNI 385
>UNIPROTKB|G4MT89 [details] [associations]
symbol:MGG_04652 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0043581 EMBL:CM001232 GO:GO:0003899
GO:GO:0005665 KO:K03006 RefSeq:XP_003713642.1
EnsemblFungi:MGG_04652T0 GeneID:2678092 KEGG:mgr:MGG_04652
Uniprot:G4MT89
Length = 1757
Score = 826 (295.8 bits), Expect = 4.2e-81, P = 4.2e-81
Identities = 176/409 (43%), Positives = 254/409 (62%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQG 58
+ A S APL+ ++++QFG+L+P+EI+ MSV +++P+TM+ R P+ GGL DP G
Sbjct: 4 LIFAPSSAPLKTIEEIQFGVLAPEEIKNMSVVH--VQYPDTMDETRTKPREGGLNDPLLG 61
Query: 59 VIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSH 118
DR +C+TC +M CPGHFGHI+LAKPV+H GF+ KT KIL VC CSKLL ++
Sbjct: 62 TTDRQYKCKTCNNDMNNCPGHFGHIELAKPVYHPGFINKTKKILEMVCHQCSKLLCDENN 121
Query: 119 PKVRDVVLKTKGQSRRRQAFIYDLCKGKNICE---GGDEMDINKDGAEDPNSLQNKKQGH 175
+ L+ + + R A ++ CKGK +CE GG + KD + ++ K H
Sbjct: 122 DEQFAQALRLR-DPKARFAMVWKACKGKKVCEIETGGKD---EKDSIDTATGIE--KVPH 175
Query: 176 GGCGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRY-QPNIR 234
GGCG P+IR+ L L A+ + E+ +K++ K L+ +Q H + ++
Sbjct: 176 GGCGSTHPDIRKKALQLYAKVEEAREEGMKKEV----KDKLITPEQAHHILKHIPEDDLW 231
Query: 235 RSGLD---LTAEWKHVN-----EDSQEKKIPLTG--KGVLL-DDLTHKLADIIKCNNELI 283
+ GL+ EW V I + G +G+ DDLT+KL DII+ N +
Sbjct: 232 KMGLNKDYARPEWLIVTVLPVPPPPVRPSISVDGTSQGMRSEDDLTYKLGDIIRANGNVK 291
Query: 284 RNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIR 343
+ + GA H+ E ++LQ+HVAT DND+ +PR++QKSG+P+K+I+ARLKGKEGR+R
Sbjct: 292 QAHAEGAPNHICTEFEELLQYHVATYMDNDIASIPRSLQKSGRPIKSIRARLKGKEGRLR 351
Query: 344 GNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
GNLMGKRVDFSARTVIT D N+ + +VGVPRSIA+ +T+PE VTP N+D
Sbjct: 352 GNLMGKRVDFSARTVITGDANISLHEVGVPRSIARTLTYPETVTPHNID 400
>ASPGD|ASPL0000054301 [details] [associations]
symbol:AN0809 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 EMBL:BN001308 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACD01000013 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
RefSeq:XP_658413.1 STRING:Q5BF71 EnsemblFungi:CADANIAT00001852
GeneID:2876587 KEGG:ani:AN0809.2 Uniprot:Q5BF71
Length = 1745
Score = 810 (290.2 bits), Expect = 2.1e-79, P = 2.1e-79
Identities = 176/400 (44%), Positives = 241/400 (60%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR--PKLGGLMDPRQGVIDRS 63
SKAPLR + ++QFG+ SP+EI+RMSV +++PETM+ R P+ GL DPR G IDR
Sbjct: 9 SKAPLRTIAEIQFGLFSPEEIKRMSVVH--VEYPETMDDQRQRPRTKGLNDPRLGTIDRQ 66
Query: 64 SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
C+TC ECPGHFGHI+LA PVFH+GF+TK K+L VC C K+ + S PK D
Sbjct: 67 WNCETCEEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKANTSDPKFLD 126
Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
L+ + +RR I+ L K ICE + ++ G E ++ HGGCG QP
Sbjct: 127 A-LRIR-DPKRRFDHIWRLSKDILICEADPPPEDDEYGKESSKPVRL----HGGCGNAQP 180
Query: 184 NIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLD---L 240
+R+ G+ L WK E + K ++ + + ++R GL
Sbjct: 181 TVRKEGITLVGTWKPSKSMMDEMDMQQPEKKIITPQMALNIFRNISHEDVRIMGLSNDYA 240
Query: 241 TAEWK-----HVNEDSQEKKIPLTGK--GVL-LDDLTHKLADIIKCNNELIRNESSGAAT 292
EW V + + G G DDLT+KLA+I++ N + R E GA
Sbjct: 241 RPEWMILTVLPVPPPPVRPSVVVGGSTSGQRGEDDLTYKLAEIVRANQNVQRCEQEGAPE 300
Query: 293 HVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 352
HV+ E +LQ+H+AT DND+ G P+AMQKS +P+KAI++RLKGKEGR+R NLMGKRVD
Sbjct: 301 HVVREFESLLQYHIATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVD 360
Query: 353 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
FSARTVIT DPNL +D+VGVP+SIA+ +T+PE+VTP+N++
Sbjct: 361 FSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIE 400
>ASPGD|ASPL0000047704 [details] [associations]
symbol:AN10316 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EnsemblFungi:CADANIAT00009238 Uniprot:C8VPJ2
Length = 1445
Score = 320 (117.7 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 64/127 (50%), Positives = 84/127 (66%)
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
DDLT KL DI++ N L GA I E +Q +A ++D+PGL +A G
Sbjct: 292 DDLTAKLGDIVQSNINLKNALLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKA--DLG 349
Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
KP++ RLKGK+GR RGNL GKRVDFS RTVI+PDPNLR+D+V VP +A+NMT+PE+
Sbjct: 350 KPIRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEV 409
Query: 386 VTPFNMD 392
V +N +
Sbjct: 410 VNRYNKE 416
Score = 220 (82.5 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 50/154 (32%), Positives = 81/154 (52%)
Query: 2 AMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKL-GGLMDPRQGVI 60
A + P + +K+++FG+LS D+I V E + +E R + G +D R G+
Sbjct: 14 AQVIDRVP-KVIKELKFGVLSNDDIVSQGVVEVSDRKFFNLENDRSIVPNGPLDARMGIS 72
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK 120
+++S CQTC G + C GHFGH+ L P FHVG+ + I IL+ +C CS +L+ + +
Sbjct: 73 NKTSTCQTCGGALQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECSHILLPEAERR 132
Query: 121 --VRDVVLKTKGQSRRRQAF--IYDLCKGKNICE 150
+R++ RR Q + D C+ CE
Sbjct: 133 AFLREMRRPRLDNLRRMQIAKRVNDRCRKTRTCE 166
>WB|WBGene00004411 [details] [associations]
symbol:rpc-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0040035 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 eggNOG:COG0086
HSSP:P04050 GO:GO:0032549 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:FO080771 PIR:T34157 RefSeq:NP_501127.2
ProteinModelPortal:Q18566 SMR:Q18566 STRING:Q18566 PaxDb:Q18566
EnsemblMetazoa:C42D4.8 GeneID:177491 KEGG:cel:CELE_C42D4.8
UCSC:C42D4.8 CTD:177491 WormBase:C42D4.8 InParanoid:Q18566
NextBio:897062 Uniprot:Q18566
Length = 1400
Score = 312 (114.9 bits), Expect = 3.0e-45, Sum P(2) = 3.0e-45
Identities = 65/131 (49%), Positives = 87/131 (66%)
Query: 262 GVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
G DD+T KL +I+ N+ L +++ GA + + E + LQ A +++M GLP M
Sbjct: 269 GTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDM 328
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
Q + ++A RLKGK+GR RGNL GKRVDFS RTVI+PDPNLRIDQVGVP +A +T
Sbjct: 329 QPK-RAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLT 387
Query: 382 FPEIVTPFNMD 392
FPEIV N++
Sbjct: 388 FPEIVNASNIE 398
Score = 208 (78.3 bits), Expect = 3.0e-45, Sum P(2) = 3.0e-45
Identities = 44/118 (37%), Positives = 65/118 (55%)
Query: 37 KFPETMEGG-RPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFV 95
K E +EG +P G +DP+ GV ++ C TC +T+C GHFG+ DL PVFH+GF
Sbjct: 40 KLYEDVEGKLQPANYGPLDPKMGVSTKTGTCSTCGLGLTDCVGHFGYFDLDVPVFHIGFF 99
Query: 96 TKTIKILRCVCFYCSKLLVSPSHPKV--RDVVLKTKGQSRRRQAF--IYDLCKGKNIC 149
TI++L+C+C CS +L++P +V R V+ R+ I CK + C
Sbjct: 100 KLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTC 157
>UNIPROTKB|E2QXD8 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
EMBL:AAEX03002853 Ensembl:ENSCAFT00000024699 Uniprot:E2QXD8
Length = 1376
Score = 288 (106.4 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 62/127 (48%), Positives = 83/127 (65%)
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
DDLT KL +II N+ + ++ SGA T +I E+ LQ A ++++ G+P M
Sbjct: 277 DDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK- 335
Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
K + RLKGK+GR RGNL GKRVDFS RTVI+PDPNLRID+V VP +A+ +TFPE
Sbjct: 336 KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEK 395
Query: 386 VTPFNMD 392
V N++
Sbjct: 396 VNKANIN 402
Score = 217 (81.4 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 48/142 (33%), Positives = 75/142 (52%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR-PKLGGLMDPRQGVIDRSSRCQTCAG 71
+ + FG+ SP+E+R+ + + K + + P L G++D R G ++ C+TC
Sbjct: 15 ISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMGTSEKDRPCETCGK 74
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKG- 130
N+ +C GH+G+IDL P FHVG+ I IL+ +C C +++S K LK G
Sbjct: 75 NLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPGL 134
Query: 131 ---QSRRRQAFIYDLCKGKNIC 149
Q R + I D C+ KNIC
Sbjct: 135 TYLQKRGLKKKISDKCRKKNIC 156
Score = 41 (19.5 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 144 KGKNICEGGDEMDINKDGAEDPNS-LQNKKQGHGGCGRYQPN 184
KGK C G+++ +N NS L + G G N
Sbjct: 623 KGKQYCGKGEDLCVNDSYVTIQNSELMSGSMDKGTLGSGSKN 664
Score = 38 (18.4 bits), Expect = 6.7e-25, Sum P(2) = 6.7e-25
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 80 FGHIDLAKPVFHVGFVTKTIKILRCVCFY--CSKLLVSP--SH-PKVRDVVLKTKGQSRR 134
F D+AK + H+ F K+ + +R SK L S +H P + V+ G S +
Sbjct: 6 FRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMGTSEK 65
Query: 135 RQAFIYDLCKGKNICE 150
+ + C GKN+ +
Sbjct: 66 DRPC--ETC-GKNLAD 78
>UNIPROTKB|J9P629 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 CTD:11128 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:AAEX03002853 RefSeq:XP_536399.2
Ensembl:ENSCAFT00000047369 GeneID:479256 KEGG:cfa:479256
Uniprot:J9P629
Length = 1390
Score = 288 (106.4 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 62/127 (48%), Positives = 83/127 (65%)
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
DDLT KL +II N+ + ++ SGA T +I E+ LQ A ++++ G+P M
Sbjct: 277 DDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK- 335
Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
K + RLKGK+GR RGNL GKRVDFS RTVI+PDPNLRID+V VP +A+ +TFPE
Sbjct: 336 KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEK 395
Query: 386 VTPFNMD 392
V N++
Sbjct: 396 VNKANIN 402
Score = 217 (81.4 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 48/142 (33%), Positives = 75/142 (52%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR-PKLGGLMDPRQGVIDRSSRCQTCAG 71
+ + FG+ SP+E+R+ + + K + + P L G++D R G ++ C+TC
Sbjct: 15 ISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMGTSEKDRPCETCGK 74
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKG- 130
N+ +C GH+G+IDL P FHVG+ I IL+ +C C +++S K LK G
Sbjct: 75 NLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPGL 134
Query: 131 ---QSRRRQAFIYDLCKGKNIC 149
Q R + I D C+ KNIC
Sbjct: 135 TYLQKRGLKKKISDKCRKKNIC 156
Score = 41 (19.5 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 144 KGKNICEGGDEMDINKDGAEDPNS-LQNKKQGHGGCGRYQPN 184
KGK C G+++ +N NS L + G G N
Sbjct: 620 KGKQYCGKGEDLCVNDSYVTIQNSELMSGSMDKGTLGSGSKN 661
Score = 38 (18.4 bits), Expect = 6.9e-25, Sum P(2) = 6.9e-25
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 80 FGHIDLAKPVFHVGFVTKTIKILRCVCFY--CSKLLVSP--SH-PKVRDVVLKTKGQSRR 134
F D+AK + H+ F K+ + +R SK L S +H P + V+ G S +
Sbjct: 6 FRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMGTSEK 65
Query: 135 RQAFIYDLCKGKNICE 150
+ + C GKN+ +
Sbjct: 66 DRPC--ETC-GKNLAD 78
>POMBASE|SPBC651.08c [details] [associations]
symbol:rpc1 "DNA-directed RNA polymerase III complex
large subunit Rpc1 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISO] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
PomBase:SPBC651.08c GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 KO:K03018 OrthoDB:EOG4X3M8C eggNOG:COG0086
GO:GO:0032549 HOGENOM:HOG000222974 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:DQ156227 PIR:T40607 RefSeq:NP_595506.1
ProteinModelPortal:O94666 STRING:O94666 EnsemblFungi:SPBC651.08c.1
GeneID:2541094 KEGG:spo:SPBC651.08c NextBio:20802207 Uniprot:O94666
Length = 1405
Score = 288 (106.4 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 65/126 (51%), Positives = 81/126 (64%)
Query: 266 DDLTHKLADIIKCNNELIRNE-SSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKS 324
DDLT K+ +II + LIR S G + E + +Q +A +++MPGL R
Sbjct: 271 DDLTVKITEII-WTSSLIRAALSKGTPISNLMEQWEFMQLSIAMYINSEMPGL-RPSDMP 328
Query: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPE 384
KP++ RLKGK+GR RGNL GKRVDFS RTVI+PDPNLRIDQV VP IA+ +TFPE
Sbjct: 329 SKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVAVPYRIAKILTFPE 388
Query: 385 IVTPFN 390
VT N
Sbjct: 389 RVTTQN 394
Score = 216 (81.1 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 54/163 (33%), Positives = 79/163 (48%)
Query: 5 DSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSS 64
D + P R +K +QFGI P+E + E + TM P G +D G ++
Sbjct: 6 DDQIPKR-IKHLQFGINGPEEFVKDGTVEVSRRDLYTMTDRSPAEHGALDLHMGTSNKQI 64
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK--VR 122
C TC +M +C GHFG++ LA PVFH+G+ T+ IL+ +C CS +L+S + ++
Sbjct: 65 NCATCGESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDCSSVLLSDQEKRQFLK 124
Query: 123 DVVLKTKGQSRRRQAF--IYDLCKGKNICEGGDEMD--INKDG 161
D+ RR Q I D CK C D M + K G
Sbjct: 125 DLRRPGIDNLRRSQICKRINDHCKKMRRCSKCDAMQGVVKKAG 167
>UNIPROTKB|O14802 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=NAS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=NAS] [GO:0045087 "innate immune response" evidence=IMP]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IMP] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:CH471083 GO:GO:0045087 GO:GO:0051607 Gene3D:2.40.40.20
InterPro:IPR009010 Reactome:REACT_1788 GO:GO:0005666 GO:GO:0003899
GO:GO:0032728 KO:K03018 GO:GO:0006386 GO:GO:0006385 eggNOG:COG0086
GO:GO:0032549 HOVERGEN:HBG004339 CTD:11128 HOGENOM:HOG000222974
OMA:PRRPLIF OrthoDB:EOG4QVCB4 PANTHER:PTHR19376:SF15 EMBL:AF021351
EMBL:AL512628 EMBL:BC041089 EMBL:AY091459 IPI:IPI00024163
RefSeq:NP_008986.2 UniGene:Hs.436896 ProteinModelPortal:O14802
SMR:O14802 IntAct:O14802 STRING:O14802 PhosphoSite:O14802
PaxDb:O14802 PRIDE:O14802 Ensembl:ENST00000372371 GeneID:11128
KEGG:hsa:11128 UCSC:uc001jzn.3 GeneCards:GC10M079729
HGNC:HGNC:30074 HPA:HPA037926 MIM:607694 MIM:614258
neXtProt:NX_O14802 Orphanet:88637 Orphanet:77295
PharmGKB:PA134900426 InParanoid:O14802 PhylomeDB:O14802
ChiTaRS:POLR3A GenomeRNAi:11128 NextBio:42292 ArrayExpress:O14802
Bgee:O14802 CleanEx:HS_POLR3A Genevestigator:O14802
GermOnline:ENSG00000148606 Uniprot:O14802
Length = 1390
Score = 288 (106.4 bits), Expect = 1.9e-43, Sum P(2) = 1.9e-43
Identities = 62/127 (48%), Positives = 83/127 (65%)
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
DDLT KL +II N+ + ++ SGA T +I E+ LQ A ++++ G+P M
Sbjct: 277 DDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK- 335
Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
K + RLKGK+GR RGNL GKRVDFS RTVI+PDPNLRID+V VP +A+ +TFPE
Sbjct: 336 KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEK 395
Query: 386 VTPFNMD 392
V N++
Sbjct: 396 VNKANIN 402
Score = 215 (80.7 bits), Expect = 1.9e-43, Sum P(2) = 1.9e-43
Identities = 48/142 (33%), Positives = 75/142 (52%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR-PKLGGLMDPRQGVIDRSSRCQTCAG 71
+ + FG+ SP+E+R+ + + K + + P L G++D R G ++ C+TC
Sbjct: 15 ISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMGTSEKDRPCETCGK 74
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKG- 130
N+ +C GH+G+IDL P FHVG+ I IL+ +C C +++S K LK G
Sbjct: 75 NLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPGL 134
Query: 131 ---QSRRRQAFIYDLCKGKNIC 149
Q R + I D C+ KNIC
Sbjct: 135 TYLQKRGLKKKISDKCRKKNIC 156
Score = 37 (18.1 bits), Expect = 8.8e-25, Sum P(2) = 8.8e-25
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 80 FGHIDLAKPVFHVGFVTKTIKILR 103
F D+AK + H+ F K+ + +R
Sbjct: 6 FRETDVAKKISHICFGMKSPEEMR 29
Score = 37 (18.1 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 144 KGKNICEGGDEMDINKDGAEDPNS-LQNKKQGHGGCGRYQPN 184
KGK C G+++ N NS L + G G N
Sbjct: 620 KGKQYCGKGEDLCANDSYVTIQNSELMSGSMDKGTLGSGSKN 661
>DICTYBASE|DDB_G0277199 [details] [associations]
symbol:rpc1 "RNA polymerase III, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0277199 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000019 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
KO:K03018 eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:XP_642724.1 ProteinModelPortal:Q86AQ5
STRING:Q86AQ5 EnsemblProtists:DDB0216293 GeneID:8620917
KEGG:ddi:DDB_G0277199 ProtClustDB:CLSZ2729139 Uniprot:Q86AQ5
Length = 1450
Score = 465 (168.7 bits), Expect = 9.6e-43, P = 9.6e-43
Identities = 133/399 (33%), Positives = 201/399 (50%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDR 62
+ + AP + + +QFG+LS D+I R+S + + + +P G++D + G D+
Sbjct: 5 LKEDDAPKK-IGHIQFGLLSEDDIVRLSHVQIVNRELFDLVKRKPTPYGVLDNKLGTSDK 63
Query: 63 SSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK-- 120
+ C TC ++ +C GHFG+I L PVFH+G++ + IL+ +C CS +L++ +
Sbjct: 64 QAMCTTCGLSIVDCVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCSTILLNEEKKQYY 123
Query: 121 VRDVVLKTKGQSRRRQAF--IYDLCKGKNICE--GGDEMDINKDGAEDPNSLQNKKQGHG 176
+R + K +R+ I+ C+ C G I K GA + K +G
Sbjct: 124 LRKMRNKKMDNLQRKSLLKKIFLECRKTKECLKCGSTNGMIKKSGAF--KIIHEKYKGKT 181
Query: 177 GCGRYQPNIRRSGLDLTAEWK-HVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRR 235
+ + + E K H+ + +Q+ PL + P I R
Sbjct: 182 ESLQDYYALYDDAIKYNPEMKSHIKK-AQDDLNPLVALNLFKKISYQDIEIMNMDPVIGR 240
Query: 236 -SGLDLTAEWKHVNEDSQEKKIPLTG-KGVLLDDLTHKLADIIKCNNELIRNESSGAATH 293
L LT + V S +P+ G G DDLT KL++I+ N E IR+ A
Sbjct: 241 PERLILT--YMLVPPVSIRPSVPMDGGSGTNEDDLTMKLSEILHIN-EHIRSNVDRAEMS 297
Query: 294 VIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
I E+ LQ A ++D+PGLP M K K ++ + RLKGK GR RGNL GKRVDF
Sbjct: 298 AIMEDWDYLQASCAIYINSDVPGLPLQM-KPTKAVRGLSQRLKGKTGRFRGNLSGKRVDF 356
Query: 354 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
S RTVI+PDPNL ID+V VP+ IA MT+PE VT +N++
Sbjct: 357 SGRTVISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIE 395
>UNIPROTKB|A4IF62 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9913 "Bos taurus" [GO:0045087 "innate immune
response" evidence=ISS] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0032728 KO:K03018 eggNOG:COG0086 GO:GO:0032549
GeneTree:ENSGT00700000104490 HOVERGEN:HBG004339 EMBL:BC134422
IPI:IPI00701819 RefSeq:NP_001077219.1 UniGene:Bt.58772
ProteinModelPortal:A4IF62 STRING:A4IF62 PRIDE:A4IF62
Ensembl:ENSBTAT00000017638 GeneID:540308 KEGG:bta:540308 CTD:11128
HOGENOM:HOG000222974 InParanoid:A4IF62 OMA:PRRPLIF
OrthoDB:EOG4QVCB4 NextBio:20878554 ArrayExpress:A4IF62
PANTHER:PTHR19376:SF15 Uniprot:A4IF62
Length = 1390
Score = 288 (106.4 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 62/127 (48%), Positives = 83/127 (65%)
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
DDLT KL +II N+ + ++ SGA T +I E+ LQ A ++++ G+P M
Sbjct: 277 DDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK- 335
Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
K + RLKGK+GR RGNL GKRVDFS RTVI+PDPNLRID+V VP +A+ +TFPE
Sbjct: 336 KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEK 395
Query: 386 VTPFNMD 392
V N++
Sbjct: 396 VNKANIN 402
Score = 204 (76.9 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 46/142 (32%), Positives = 73/142 (51%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR-PKLGGLMDPRQGVIDRSSRCQTCAG 71
+ + FG+ S +E+R+ + + K + + P L G++D R G ++ C+TC
Sbjct: 15 ISHICFGMKSAEEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDHRMGTSEKDRPCETCGK 74
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKG- 130
N+ +C GH+G+IDL P FHVG+ I IL+ +C C +++S K LK G
Sbjct: 75 NLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPGL 134
Query: 131 ---QSRRRQAFIYDLCKGKNIC 149
Q R + I D C+ KN C
Sbjct: 135 TYLQKRGLKKKISDKCRKKNTC 156
Score = 41 (19.5 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 144 KGKNICEGGDEMDINKDGAEDPNS-LQNKKQGHGGCGRYQPN 184
KGK C G+++ +N NS L + G G N
Sbjct: 620 KGKQYCGRGEDLCVNDSYVTIQNSELMSGSMDKGTLGSGSKN 661
Score = 40 (19.1 bits), Expect = 4.3e-25, Sum P(2) = 4.3e-25
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 80 FGHIDLAKPVFHVGFVTKTIKILRCVCFY--CSKLLVSP--SH-PKVRDVVLKTKGQSRR 134
F D+AK + H+ F K+ + +R SK L S +H P + V+ G S +
Sbjct: 6 FRETDVAKKISHICFGMKSAEEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDHRMGTSEK 65
Query: 135 RQAFIYDLCKGKNICE 150
+ + C GKN+ +
Sbjct: 66 DRPC--ETC-GKNLAD 78
>UNIPROTKB|E9PTB6 [details] [associations]
symbol:Polr3a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0032728
"positive regulation of interferon-beta production" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:1305574 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
IPI:IPI00766228 PRIDE:E9PTB6 Ensembl:ENSRNOT00000013501
Uniprot:E9PTB6
Length = 1342
Score = 288 (106.4 bits), Expect = 3.2e-42, Sum P(2) = 3.2e-42
Identities = 62/127 (48%), Positives = 83/127 (65%)
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
DDLT KL +II N+ + ++ SGA T +I E+ LQ A ++++ G+P M
Sbjct: 277 DDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK- 335
Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
K + RLKGK+GR RGNL GKRVDFS RTVI+PDPNLRID+V VP +A+ +TFPE
Sbjct: 336 KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEK 395
Query: 386 VTPFNMD 392
V N++
Sbjct: 396 VNKANIN 402
Score = 203 (76.5 bits), Expect = 3.2e-42, Sum P(2) = 3.2e-42
Identities = 45/142 (31%), Positives = 74/142 (52%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR-PKLGGLMDPRQGVIDRSSRCQTCAG 71
+ + FG+ SP+E+R+ + + K + + P L G++D R G ++ C+TC
Sbjct: 15 ISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMGTSEKDRPCETCGK 74
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKG- 130
N+ +C GH+G+IDL P FHVG+ I IL+ +C C +++S + LK G
Sbjct: 75 NLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKQQFLDFLKRPGL 134
Query: 131 ---QSRRRQAFIYDLCKGKNIC 149
Q R + I D C+ K+ C
Sbjct: 135 TYLQKRGLKKKISDKCRKKSTC 156
Score = 38 (18.4 bits), Expect = 6.3e-25, Sum P(2) = 6.3e-25
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 80 FGHIDLAKPVFHVGFVTKTIKILRCVCFY--CSKLLVSP--SH-PKVRDVVLKTKGQSRR 134
F D+AK + H+ F K+ + +R SK L S +H P + V+ G S +
Sbjct: 6 FRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMGTSEK 65
Query: 135 RQAFIYDLCKGKNICE 150
+ + C GKN+ +
Sbjct: 66 DRPC--ETC-GKNLAD 78
>UNIPROTKB|F1NIK7 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045087
"innate immune response" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
IPI:IPI00580235 EMBL:AADN02027942 EMBL:AADN02027940
EMBL:AADN02027941 Ensembl:ENSGALT00000007929 Uniprot:F1NIK7
Length = 1390
Score = 288 (106.4 bits), Expect = 5.7e-42, Sum P(2) = 5.7e-42
Identities = 62/127 (48%), Positives = 83/127 (65%)
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
DDLT KL +II N+ + ++ SGA T +I E+ LQ A ++++ G+P M
Sbjct: 277 DDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK- 335
Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
K + RLKGK+GR RGNL GKRVDFS RTVI+PDPNLRID+V VP +A+ +TFPE
Sbjct: 336 KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPIHVAKILTFPEK 395
Query: 386 VTPFNMD 392
V N++
Sbjct: 396 VNKANIN 402
Score = 201 (75.8 bits), Expect = 5.7e-42, Sum P(2) = 5.7e-42
Identities = 44/142 (30%), Positives = 74/142 (52%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLG-GLMDPRQGVIDRSSRCQTCAG 71
+ + FG+ SP+E+R+ + + K + + L G++D R G ++ C+TC
Sbjct: 15 ISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMGTSEKDRPCETCGK 74
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKG- 130
N+ +C GH+G+IDL P FHVG+ I IL+ +C C ++++S K LK G
Sbjct: 75 NLADCLGHYGYIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSVEEKKQFLDYLKRPGL 134
Query: 131 ---QSRRRQAFIYDLCKGKNIC 149
Q R + + + C+ KN C
Sbjct: 135 TYLQKRGLKKKVSEKCRKKNTC 156
Score = 37 (18.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 144 KGKNICEGGDEMDINKDGAEDPNS-LQNKKQGHGGCGRYQPN 184
KGK C G+++ N NS L + G G N
Sbjct: 620 KGKQYCGKGEDLCYNDSYVTIQNSELMSGSMDKGTLGSGSKN 661
>UNIPROTKB|Q5ZL98 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 HOVERGEN:HBG004339
CTD:11128 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
PANTHER:PTHR19376:SF15 EMBL:AJ719836 IPI:IPI00580235
RefSeq:NP_001006500.1 UniGene:Gga.11367 ProteinModelPortal:Q5ZL98
STRING:Q5ZL98 PRIDE:Q5ZL98 GeneID:423727 KEGG:gga:423727
InParanoid:Q5ZL98 NextBio:20826153 Uniprot:Q5ZL98
Length = 1390
Score = 288 (106.4 bits), Expect = 5.7e-42, Sum P(2) = 5.7e-42
Identities = 62/127 (48%), Positives = 83/127 (65%)
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
DDLT KL +II N+ + ++ SGA T +I E+ LQ A ++++ G+P M
Sbjct: 277 DDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK- 335
Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
K + RLKGK+GR RGNL GKRVDFS RTVI+PDPNLRID+V VP +A+ +TFPE
Sbjct: 336 KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPIHVAKILTFPEK 395
Query: 386 VTPFNMD 392
V N++
Sbjct: 396 VNKANIN 402
Score = 201 (75.8 bits), Expect = 5.7e-42, Sum P(2) = 5.7e-42
Identities = 44/142 (30%), Positives = 74/142 (52%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLG-GLMDPRQGVIDRSSRCQTCAG 71
+ + FG+ SP+E+R+ + + K + + L G++D R G ++ C+TC
Sbjct: 15 ISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMGTSEKDRPCETCGK 74
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKG- 130
N+ +C GH+G+IDL P FHVG+ I IL+ +C C ++++S K LK G
Sbjct: 75 NLADCLGHYGYIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSVEEKKQFLDYLKRPGL 134
Query: 131 ---QSRRRQAFIYDLCKGKNIC 149
Q R + + + C+ KN C
Sbjct: 135 TYLQKRGLKKKVSEKCRKKNTC 156
Score = 37 (18.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 144 KGKNICEGGDEMDINKDGAEDPNS-LQNKKQGHGGCGRYQPN 184
KGK C G+++ N NS L + G G N
Sbjct: 620 KGKQYCGKGEDLCYNDSYVTIQNSELMSGSMDKGTLGSGSKN 661
>UNIPROTKB|F1S2E6 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0045087 "innate immune response" evidence=IEA]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:CU407090 RefSeq:XP_001929395.1 Ensembl:ENSSSCT00000011305
GeneID:100156229 KEGG:ssc:100156229 Uniprot:F1S2E6
Length = 1390
Score = 287 (106.1 bits), Expect = 1.8e-41, Sum P(2) = 1.8e-41
Identities = 62/126 (49%), Positives = 82/126 (65%)
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
DDLT KL +II N+ + ++ SGA T +I E+ LQ A ++++ G+P M
Sbjct: 277 DDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK- 335
Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
K + RLKGK+GR RGNL GKRVDFS RTVI+PDPNLRID+V VP +A+ +TFPE
Sbjct: 336 KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEK 395
Query: 386 VTPFNM 391
V N+
Sbjct: 396 VNKANI 401
Score = 203 (76.5 bits), Expect = 1.8e-41, Sum P(2) = 1.8e-41
Identities = 46/142 (32%), Positives = 73/142 (51%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR-PKLGGLMDPRQGVIDRSSRCQTCAG 71
+ + FG+ S +E+R+ + + K + + P L G++D R G ++ C+TC
Sbjct: 15 ISHICFGMKSAEEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDHRMGTSEKDRPCETCGK 74
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKG- 130
N+ +C GH+G+IDL P FHVG+ I IL+ +C C +++S K LK G
Sbjct: 75 NLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEERKQFLDYLKRPGL 134
Query: 131 ---QSRRRQAFIYDLCKGKNIC 149
Q R + I D C+ KN C
Sbjct: 135 TYLQKRGLKKKISDKCRKKNTC 156
Score = 41 (19.5 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 144 KGKNICEGGDEMDINKDGAEDPNS-LQNKKQGHGGCGRYQPN 184
KGK C G+++ +N NS L + G G N
Sbjct: 620 KGKQYCGKGEDLCVNDSYVTIQNSELMSGSMDKGTLGSGSKN 661
Score = 40 (19.1 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 80 FGHIDLAKPVFHVGFVTKTIKILRCVCFY--CSKLLVSP--SH-PKVRDVVLKTKGQSRR 134
F D+AK + H+ F K+ + +R SK L S +H P + V+ G S +
Sbjct: 6 FRETDVAKKISHICFGMKSAEEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDHRMGTSEK 65
Query: 135 RQAFIYDLCKGKNICE 150
+ + C GKN+ +
Sbjct: 66 DRPC--ETC-GKNLAD 78
>GENEDB_PFALCIPARUM|PF13_0150 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase 3
largest subunit" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 287 (106.1 bits), Expect = 2.9e-40, Sum P(2) = 2.9e-40
Identities = 59/133 (44%), Positives = 84/133 (63%)
Query: 262 GVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPR-- 319
G DDLT L++I + NN + ++G T+ N++ LQ + ++D P + +
Sbjct: 268 GTAEDDLTCILSEITQLNNTIYNQCTNGYQTNQFLGNVEFLQLQITRFINSDSPAVSQLL 327
Query: 320 AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 379
A Q KP + I RLKGKEGR R NL GKRVDFS+RTVI+PDPN+ ID+V +P+ IA
Sbjct: 328 ATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRTVISPDPNISIDEVVIPKIIAMR 387
Query: 380 MTFPEIVTPFNMD 392
+T+PE V +N+D
Sbjct: 388 LTYPETVNKYNID 400
Score = 197 (74.4 bits), Expect = 2.9e-40, Sum P(2) = 2.9e-40
Identities = 39/103 (37%), Positives = 60/103 (58%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
+K ++FGI+S ++I + S + + G P G++D + G +S C+TC
Sbjct: 35 IKSIRFGIMSKEDIIKYSEVKIMNREMYKNNSGIPYPYGVLDLKLGAHKSNSVCETCNKK 94
Query: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVS 115
+ C GHFG+I+L PVFH+G+ I IL C+C YCS LL+S
Sbjct: 95 LINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCSSLLLS 137
>UNIPROTKB|Q8IE49 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed
RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 287 (106.1 bits), Expect = 2.9e-40, Sum P(2) = 2.9e-40
Identities = 59/133 (44%), Positives = 84/133 (63%)
Query: 262 GVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPR-- 319
G DDLT L++I + NN + ++G T+ N++ LQ + ++D P + +
Sbjct: 268 GTAEDDLTCILSEITQLNNTIYNQCTNGYQTNQFLGNVEFLQLQITRFINSDSPAVSQLL 327
Query: 320 AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 379
A Q KP + I RLKGKEGR R NL GKRVDFS+RTVI+PDPN+ ID+V +P+ IA
Sbjct: 328 ATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRTVISPDPNISIDEVVIPKIIAMR 387
Query: 380 MTFPEIVTPFNMD 392
+T+PE V +N+D
Sbjct: 388 LTYPETVNKYNID 400
Score = 197 (74.4 bits), Expect = 2.9e-40, Sum P(2) = 2.9e-40
Identities = 39/103 (37%), Positives = 60/103 (58%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
+K ++FGI+S ++I + S + + G P G++D + G +S C+TC
Sbjct: 35 IKSIRFGIMSKEDIIKYSEVKIMNREMYKNNSGIPYPYGVLDLKLGAHKSNSVCETCNKK 94
Query: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVS 115
+ C GHFG+I+L PVFH+G+ I IL C+C YCS LL+S
Sbjct: 95 LINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCSSLLLS 137
>FB|FBgn0030687 [details] [associations]
symbol:CG17209 species:7227 "Drosophila melanogaster"
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISS] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:AE014298 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
GO:GO:0032549 GeneTree:ENSGT00700000104490 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:NP_001096987.2 UniGene:Dm.14839
ProteinModelPortal:A8JUY3 SMR:A8JUY3 STRING:A8JUY3
EnsemblMetazoa:FBtr0300811 GeneID:32524 KEGG:dme:Dmel_CG17209
FlyBase:FBgn0030687 OrthoDB:EOG4BNZSM PhylomeDB:A8JUY3
GenomeRNAi:32524 NextBio:778916 Bgee:A8JUY3 Uniprot:A8JUY3
Length = 1383
Score = 282 (104.3 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 61/130 (46%), Positives = 84/130 (64%)
Query: 262 GVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAM 321
G DDLT K ++I+ N+ + R+ ++G +I E+ LQ HVA +++ G+P M
Sbjct: 272 GTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYFHSEISGIPINM 331
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
K + I RLKGK+GR R NL GKRVDFS RTVI+PDPNL I+QVGVP +A+ +T
Sbjct: 332 APK-KTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQVGVPVRVAKILT 390
Query: 382 FPEIVTPFNM 391
+PE V P N+
Sbjct: 391 YPERVNPANI 400
Score = 203 (76.5 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 44/139 (31%), Positives = 73/139 (52%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR-PKLGGLMDPRQGVIDRSSRCQTCAG 71
+ VQFGI DEI++ ++ I + R P G++D R G+ + + C+TC
Sbjct: 15 ISHVQFGISGADEIQQEALVR--IISKNLYQAQRQPVPYGVLDRRMGISTKDAMCETCGQ 72
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQ 131
+ EC GHFG++DLA PVFH+G TI IL+ +C C+ +++ P ++ + L
Sbjct: 73 GLNECIGHFGYLDLALPVFHIGHFRSTINILQMICKVCAHVMLKPEDRQLYEKKLHNPNF 132
Query: 132 SR--RRQAFIYDLCKGKNI 148
S ++ + L K K +
Sbjct: 133 SYLGKKALHVQMLAKAKKV 151
Score = 39 (18.8 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 85 LAKPVFHVGFVTKTIKILRC 104
L K HV + K K+ +C
Sbjct: 135 LGKKALHVQMLAKAKKVTKC 154
>CGD|CAL0002215 [details] [associations]
symbol:orf19.3103 species:5476 "Candida albicans" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 CGD:CAL0002215 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AACQ01000086 KO:K03018 eggNOG:COG0086
GO:GO:0032549 PANTHER:PTHR19376:SF15 RefSeq:XP_715412.1
ProteinModelPortal:Q5A0Z3 STRING:Q5A0Z3 GeneID:3642908
KEGG:cal:CaO19.3103 Uniprot:Q5A0Z3
Length = 1448
Score = 261 (96.9 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 59/129 (45%), Positives = 80/129 (62%)
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM--PGLPRAM-- 321
DDLT KL +I+ ++ + G + + + E LQ VA ++D P L
Sbjct: 280 DDLTVKLTEIVWTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYINSDSANPALSTGGGG 339
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 381
KS KP++A RLKGK+GR RGNL GKRVDFS RTVI+PDPNL+ID+V VP +A+ +T
Sbjct: 340 AKSSKPIRAFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLT 399
Query: 382 FPEIVTPFN 390
+PE T +N
Sbjct: 400 YPEKCTRYN 408
Score = 234 (87.4 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 52/147 (35%), Positives = 77/147 (52%)
Query: 8 APLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR-PKLGGLMDPRQGVIDRSSRC 66
AP +C+K ++FG LS +I S E + +E GR PK G +D + G+ + C
Sbjct: 9 AP-KCIKGLEFGALSAKDIVAQSEVEIQTRDLYDLEKGRVPKEHGALDTKMGISSNAQEC 67
Query: 67 QTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK--VRDV 124
TC GN+ C GHFGHI LA PVFHVG+ I +L+C+C C+ +L+ + + D+
Sbjct: 68 STCHGNLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSCAAVLLDEQSKRQYLNDL 127
Query: 125 VLKTKGQSRRRQAF--IYDLCKGKNIC 149
RR + I + CK + C
Sbjct: 128 RKPHIDNLRRMKIIKKIIEQCKKQRRC 154
>SGD|S000005642 [details] [associations]
symbol:RPO31 "RNA polymerase III largest subunit C160"
species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=IDA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 SGD:S000005642
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:X90518
EMBL:X94335 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005666
GO:GO:0003899 Reactome:REACT_83470 KO:K03018 OrthoDB:EOG4X3M8C
eggNOG:COG0086 GO:GO:0032549 Reactome:REACT_87991 GO:GO:0042797
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222974
PANTHER:PTHR19376:SF15 EMBL:X03129 EMBL:Z75024 PIR:A00694
RefSeq:NP_014759.1 ProteinModelPortal:P04051 SMR:P04051
DIP:DIP-612N IntAct:P04051 MINT:MINT-557787 STRING:P04051
PaxDb:P04051 PeptideAtlas:P04051 EnsemblFungi:YOR116C GeneID:854283
KEGG:sce:YOR116C CYGD:YOR116c OMA:CINELDN NextBio:976257
Genevestigator:P04051 GermOnline:YOR116C Uniprot:P04051
Length = 1460
Score = 256 (95.2 bits), Expect = 7.8e-39, Sum P(2) = 7.8e-39
Identities = 59/130 (45%), Positives = 81/130 (62%)
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDM--PG-LPRAMQ 322
DDLT KL +I+ ++ + G + + + E+ LQ VA ++D P LP +
Sbjct: 283 DDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSN 342
Query: 323 KSGK--PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNM 380
GK P++ RLKGK+GR RGNL GKRVDFS RTVI+PDPNL ID+V VP +A+ +
Sbjct: 343 GGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVL 402
Query: 381 TFPEIVTPFN 390
T+PE VT +N
Sbjct: 403 TYPEKVTRYN 412
Score = 235 (87.8 bits), Expect = 7.8e-39, Sum P(2) = 7.8e-39
Identities = 56/149 (37%), Positives = 79/149 (53%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGR-PKLGGLMDPRQGVIDRSS 64
S+ P R +K ++F LS +I S E + +E R PK G +DP+ GV S
Sbjct: 7 SETPKR-IKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMGVSSSSL 65
Query: 65 RCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV 124
C TC GN+ C GHFGH+ LA PVFH+G+ TI+IL+ +C CS +L+S + +
Sbjct: 66 ECATCHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETDKRQFLH 125
Query: 125 VLKTKG-QSRRRQAF---IYDLCKGKNIC 149
L+ G + RR I D CK + C
Sbjct: 126 ELRRPGVDNLRRMGILKKILDQCKKQRRC 154
>ZFIN|ZDB-GENE-050208-103 [details] [associations]
symbol:polr3a "polymerase (RNA) III (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
ZFIN:ZDB-GENE-050208-103 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
KO:K03018 GO:GO:0032549 GeneTree:ENSGT00700000104490
PANTHER:PTHR19376:SF15 EMBL:CABZ01084340 EMBL:CABZ01084341
EMBL:CABZ01084342 EMBL:CABZ01084343 EMBL:CABZ01084344
EMBL:CABZ01084345 EMBL:CABZ01084346 IPI:IPI00960980
RefSeq:XP_003199716.1 UniGene:Dr.109694 Ensembl:ENSDART00000105273
GeneID:572258 KEGG:dre:572258 NextBio:20890901 Bgee:E7F5P2
Uniprot:E7F5P2
Length = 1390
Score = 284 (105.0 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 60/127 (47%), Positives = 83/127 (65%)
Query: 266 DDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSG 325
DDLT KL +II N+ + ++ +GA T +I E+ LQ A ++++ G+P M
Sbjct: 277 DDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK- 335
Query: 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 385
K + RLKGK+GR RGNL GKRVDFS RTVI+PDPNLRID+V VP +A+ +T+PE
Sbjct: 336 KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEK 395
Query: 386 VTPFNMD 392
V N++
Sbjct: 396 VNKANIE 402
Score = 188 (71.2 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 42/147 (28%), Positives = 78/147 (53%)
Query: 11 RCVKKVQFGILSPDEIRRMS---VTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQ 67
R + + FG+ S +++R+ + V + +T +P G++D R G ++ C+
Sbjct: 13 RKISHICFGMKSSEQMRQQAHIQVVSKNLYSQDTSH--KPLQYGVLDHRMGTSEKDRPCE 70
Query: 68 TCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDV-VL 126
TC N+ +C GH+G++DL P FH+G+ + IL+ +C CS +L++ K++ + L
Sbjct: 71 TCGKNLADCLGHYGYLDLELPCFHIGYFKAIVGILQMICKTCSHILLTKEE-KLQFLDYL 129
Query: 127 KTKG----QSRRRQAFIYDLCKGKNIC 149
+ G Q R + I D C+ K +C
Sbjct: 130 RRPGLAYLQKRGLKKKISDKCRKKTVC 156
Score = 39 (18.8 bits), Expect = 6.7e-23, Sum P(2) = 6.7e-23
Identities = 21/76 (27%), Positives = 36/76 (47%)
Query: 80 FGHIDLAKPVFHVGFVTKTIKILRCVCFY--CSKLLVSP--SHPKVRDVVLKTK-GQSRR 134
F D+A+ + H+ F K+ + +R SK L S SH ++ VL + G S +
Sbjct: 6 FRETDVARKISHICFGMKSSEQMRQQAHIQVVSKNLYSQDTSHKPLQYGVLDHRMGTSEK 65
Query: 135 RQAFIYDLCKGKNICE 150
+ + C GKN+ +
Sbjct: 66 DRPC--ETC-GKNLAD 78
>DICTYBASE|DDB_G0275759 [details] [associations]
symbol:rpa1 "RNA polymerase I, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0275759 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR EMBL:AAFI02000013 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 RefSeq:XP_643519.1 HSSP:P04050
ProteinModelPortal:Q86H36 STRING:Q86H36 PRIDE:Q86H36
EnsemblProtists:DDB0216292 GeneID:8620100 KEGG:ddi:DDB_G0275759
KO:K02999 OMA:CLLNETT ProtClustDB:CLSZ2497252
PANTHER:PTHR19376:SF11 Uniprot:Q86H36
Length = 1615
Score = 200 (75.5 bits), Expect = 4.5e-26, Sum P(2) = 4.5e-26
Identities = 71/248 (28%), Positives = 113/248 (45%)
Query: 1 MAMADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPE-TMEGGRPKLGGLMDPRQGV 59
M+M+ S + V F + D++R++SV + ++ M GG P GGL DP G
Sbjct: 1 MSMSQSALIKEEISSVSFQFYTSDDVRKLSVKQI-VEIESFDMLGG-PVPGGLHDPALGP 58
Query: 60 IDRSSRCQTCAGNMTECPGHFGHIDLAKPVFH-VGFVTKTIKILRCVCFYCSKLLVSPS- 117
+ RC TC+ + ECPGHFGHI+LA P ++ V F T K+L+ CF+C
Sbjct: 59 TGPAERCATCSLDFIECPGHFGHIELAIPCYNPVSFQT-IFKLLKNKCFHCHHFKHGKPI 117
Query: 118 -HPKVRDVVLKTKGQS------RRRQAFI--YD-LCKGKNICEGGDEMDINKDGAEDPNS 167
+ + ++ L KG R R + Y+ KGK+ EG + M+ ++ ++ ++
Sbjct: 118 INQFIEELTLLFKGDVVKARNLRERNVLLRGYEEKKKGKSNEEGEEVMESDESDSDKMDT 177
Query: 168 LQNKKQGHGGC-GRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGC 226
+NK G C G + SG + H+ + +E G G C
Sbjct: 178 DENKTNGKIICDGVFNAKEIYSG-----KATHIEDFKREVFKEFFGS--FSGYAIPCGNC 230
Query: 227 GRYQPNIR 234
G Y P +R
Sbjct: 231 GAYSPRLR 238
Score = 179 (68.1 bits), Expect = 4.5e-26, Sum P(2) = 4.5e-26
Identities = 42/115 (36%), Positives = 69/115 (60%)
Query: 279 NNELIRNE---SSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARL 335
+N++IR G A ++ ++ LQ HV + DN ++ + + IK L
Sbjct: 373 SNKMIRQSIDAGEGKAKFLV-NSVCDLQMHVNNMYDNS-----KSNSNTNEVANGIKQIL 426
Query: 336 KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN 390
+ KEG R ++MGKRV+++ARTVI+PD +L +++GVP+ A+ +TFP+ VT FN
Sbjct: 427 EKKEGLFRKHMMGKRVNYAARTVISPDISLETNEMGVPQYFAKTLTFPQPVTSFN 481
Score = 37 (18.1 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 19/73 (26%), Positives = 34/73 (46%)
Query: 246 HVNEDSQEKKIPLTG----------KGVLLDDLTHKLA-DIIKCNNE--LIRNESSGAAT 292
+++++SQEK+I L+ +GV H L+ D + N + L + G
Sbjct: 511 NLSKESQEKRIALSKTLLTSHPHAPRGVNKKVYRHLLSGDYVLANRQPTLHKPGIMGHRV 570
Query: 293 HVIAENIKMLQFH 305
V+ +N K L+ H
Sbjct: 571 KVLGKNEKTLRMH 583
>CGD|CAL0001661 [details] [associations]
symbol:RPA190 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 CGD:CAL0001661
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AACQ01000244
EMBL:AACQ01000240 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 RefSeq:XP_710723.1 RefSeq:XP_710761.1
ProteinModelPortal:Q59LW3 STRING:Q59LW3 GeneID:3647643
GeneID:3647677 KEGG:cal:CaO19.1839 KEGG:cal:CaO19.9397
Uniprot:Q59LW3
Length = 1665
Score = 184 (69.8 bits), Expect = 6.0e-24, Sum P(3) = 6.0e-24
Identities = 48/146 (32%), Positives = 79/146 (54%)
Query: 247 VNEDSQEKKIP-LTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFH 305
++E++Q + + + VL+ DL ++ ++ K E I E + + LQ
Sbjct: 361 IHENAQNELLSNIIKTSVLIRDLNERITNMYK---EKISGEDKKIIFNRLMNAFVTLQND 417
Query: 306 VATLTDNDMPGLPRAMQKSGK-PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
V D+ +GK P IK L+ KEG R ++MGKRV+++AR+VI+PDPN
Sbjct: 418 VNAFIDSTK----NQNAPAGKIPNPGIKQALEKKEGLFRKHMMGKRVNYAARSVISPDPN 473
Query: 365 LRIDQVGVPRSIAQNMTFPEIVTPFN 390
L +++GVP A+ +T+PE VT +N
Sbjct: 474 LETNEIGVPPVFAKKLTYPEPVTSYN 499
Score = 170 (64.9 bits), Expect = 6.0e-24, Sum P(3) = 6.0e-24
Identities = 39/100 (39%), Positives = 52/100 (52%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTCAG 71
+ V FG+LS +EIR++S + I P + G P GGL D G R+ C TC
Sbjct: 11 ITSVDFGVLSDEEIRKLSAKQ--ITNPIVFDNLGHPINGGLYDLSLGAFLRNV-CTTCGL 67
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSK 111
+ CPGH GHI+L PV++ F + LR C YC K
Sbjct: 68 DEKFCPGHLGHIELPVPVYNPMFFNQLYIFLRSACLYCHK 107
Score = 51 (23.0 bits), Expect = 6.0e-24, Sum P(3) = 6.0e-24
Identities = 15/67 (22%), Positives = 25/67 (37%)
Query: 178 CGRYQPNIRRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHG-------GCGRYQ 230
CG Y P R+ G E ++ ++ + ++ K G+G G
Sbjct: 229 CGMYSPGFRKDGFTKIFENSLTDKQITNNRVKGLQRPDMIKKNAGNGNGNSSSTGAASDL 288
Query: 231 PNIRRSG 237
PNI+ G
Sbjct: 289 PNIKHKG 295
Score = 38 (18.4 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 200 NEDSQEKKIPLTGKGVLLNKKQG 222
N+++ KIP G L KK+G
Sbjct: 427 NQNAPAGKIPNPGIKQALEKKEG 449
>UNIPROTKB|G4NBX7 [details] [associations]
symbol:MGG_01158 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
EMBL:CM001235 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0043581 GO:GO:0003899
KO:K02999 PANTHER:PTHR19376:SF11 RefSeq:XP_003717763.1
ProteinModelPortal:G4NBX7 EnsemblFungi:MGG_01158T0 GeneID:2675173
KEGG:mgr:MGG_01158 Uniprot:G4NBX7
Length = 1719
Score = 190 (71.9 bits), Expect = 8.2e-24, Sum P(2) = 8.2e-24
Identities = 47/122 (38%), Positives = 71/122 (58%)
Query: 271 KLADIIKC--NNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPL 328
KL I + N + ++ G T ++ E LQ V TL DN A K+ +
Sbjct: 412 KLTQIFRDLQNPTSLLSQRHGKDTTILHEAWTELQDCVNTLIDNTKSPTQGAAAKALE-- 469
Query: 329 KAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTP 388
+ IK +L+ KEG R N+MGKRV+++AR+VI+PDPN+ +++GVP A+ +T+PE VT
Sbjct: 470 EGIKQKLEKKEGLFRKNMMGKRVNYAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTS 529
Query: 389 FN 390
N
Sbjct: 530 HN 531
Score = 169 (64.5 bits), Expect = 8.2e-24, Sum P(2) = 8.2e-24
Identities = 40/100 (40%), Positives = 53/100 (53%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEGG-RPKLGGLMDPRQGVIDRSSRCQTCAG 71
+ V F +LS DEIR SV I+ T + P GGL DP G S C TC
Sbjct: 11 IDSVSFELLSADEIRAFSVRR--IENDSTFDTLLNPVPGGLYDPALGAWG-DSVCATCNL 67
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSK 111
+ CPGH GHI+L PV+H F+ + +++LR C YC +
Sbjct: 68 GPSACPGHPGHIELPVPVYHPVFMDQVLRLLRSQCAYCHR 107
>FB|FBgn0019938 [details] [associations]
symbol:RpI1 "RNA polymerase I subunit" species:7227
"Drosophila melanogaster" [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 EMBL:AE013599 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 EMBL:Y09103 EMBL:AY121632 PIR:T13803
RefSeq:NP_523743.1 UniGene:Dm.8031 ProteinModelPortal:P91875
SMR:P91875 MINT:MINT-1742038 STRING:P91875 PaxDb:P91875
GeneID:36617 KEGG:dme:Dmel_CG10122 CTD:36617 FlyBase:FBgn0019938
InParanoid:P91875 OrthoDB:EOG466T1R GenomeRNAi:36617 NextBio:799515
Bgee:P91875 GermOnline:CG10122 Uniprot:P91875
Length = 1642
Score = 183 (69.5 bits), Expect = 9.4e-23, Sum P(2) = 9.4e-23
Identities = 41/90 (45%), Positives = 61/90 (67%)
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ V L D +M R M KSG+ LK I ++ K G IR ++MGKRV+++ARTVITP
Sbjct: 377 LQMSVDVLLDVNMS---REM-KSGEGLKQI---IEKKSGLIRSHMMGKRVNYAARTVITP 429
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
DPN+ +D++G+P A+ +++P VT +N+
Sbjct: 430 DPNINVDEIGIPDIFAKKLSYPVPVTEWNV 459
Score = 166 (63.5 bits), Expect = 9.4e-23, Sum P(2) = 9.4e-23
Identities = 45/150 (30%), Positives = 77/150 (51%)
Query: 16 VQFGILSPDEIRRMSVTE--GGIKFPETMEGGRPKLGGLMDPRQGVIDRS-SRCQTCAGN 72
++F + + EIR++SV + GI F + + P GGL D R G R C TC
Sbjct: 16 LEFAVFTDQEIRKLSVVKVITGITF-DALGHAIP--GGLYDIRMGSYGRCMDPCGTCL-K 71
Query: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCV-CFYCSKLLVSPSHPKVRDVVLKTKGQ 131
+ +CPGH GHI+L PV++ F+ K ++ L C+ C +C KL + ++ + L+
Sbjct: 72 LQDCPGHMGHIELGTPVYNPFFI-KFVQRLLCIFCLHCYKLQMKDHECEIIMLQLRLIDA 130
Query: 132 SRRRQAFIYDLCKGKNICEGGDEMDINKDG 161
+A +L K + +C+ + + K+G
Sbjct: 131 GYIIEAQELELFKSEIVCQNTENLVAIKNG 160
>POMBASE|SPBC4C3.05c [details] [associations]
symbol:nuc1 "DNA-directed RNA polymerase I complex large
subunit Nuc1" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IGI] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISO] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0007000 "nucleolus organization" evidence=IMP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 PomBase:SPBC4C3.05c
GO:GO:0005829 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006406
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0034503 GO:GO:0006360
GO:GO:0007000 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999
OMA:CLLNETT PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 EMBL:X14783
EMBL:M37411 PIR:JS0080 RefSeq:NP_596300.1 ProteinModelPortal:P15398
STRING:P15398 EnsemblFungi:SPBC4C3.05c.1 GeneID:2540873
KEGG:spo:SPBC4C3.05c OrthoDB:EOG432464 NextBio:20801989
Uniprot:P15398
Length = 1689
Score = 175 (66.7 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
Identities = 75/283 (26%), Positives = 122/283 (43%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTCAG 71
+K V+FGI D++ ++SV + I P ++ P GGL D G ++S C TC
Sbjct: 11 IKSVKFGIYDVDDVEKISVKQ--IVNPVLLDNLNHPTNGGLYDLALGPYLKNSVCATCHL 68
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCS--KLLVSPSHP-----KVRDV 124
+ CPGHFGHI L P +H F ++ +LR C YC KL H K+ D
Sbjct: 69 DERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCRLKLLDY 128
Query: 125 VLKTKGQSRRRQAFIYDLCKGKN---ICEGGDEMDI---NKDGAEDPNSLQNKKQGHGGC 178
L + + + + K N + +G D D + D A+D +L +
Sbjct: 129 GLLNESEMVENVSLTEAIIKNSNGTPLEDGSDSEDSGLGHDDIAKDAATLMRIRDEF--V 186
Query: 179 GRYQPNIRRSG-LD--LTAEWKHVNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRR 235
+ + R++ +D LT H + KK+ + ++KQ C + PN R+
Sbjct: 187 AKSIADSRQNAHIDAQLTTLLLH-----ERKKVVRAFYHAISSRKQCDN-CQSFSPNFRK 240
Query: 236 SGLDLTAEWKHVNEDSQEKKIPLTGKGVLLDDLTHKL-ADIIK 277
G E IPL+GK + + T K+ +D+++
Sbjct: 241 EGFAKIFE------------IPLSGKNLQFMEQTGKIRSDVLR 271
Score = 169 (64.5 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
Identities = 38/107 (35%), Positives = 61/107 (57%)
Query: 286 ESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGN 345
E A ++ LQ V +L D++ ++ P IK L+ KEG R +
Sbjct: 421 ERRSRAFELLINAFVQLQHDVNSLIDSNRNPSSGGQSRTVPP--GIKQILEKKEGLFRKH 478
Query: 346 LMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+MGKRV+++AR+VI+PDPN+ +++GVP A +T+PE VT +N +
Sbjct: 479 MMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFN 525
Score = 41 (19.5 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 163 EDPNSLQNKKQG---HG 176
EDPN L+NK + HG
Sbjct: 303 EDPNPLKNKSKSPIAHG 319
Score = 40 (19.1 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 268 LTHKLADIIKCNNELIRNESSGAATHVIAENIKML 302
L H + +I N RN SSG + + IK +
Sbjct: 437 LQHDVNSLIDSN----RNPSSGGQSRTVPPGIKQI 467
Score = 40 (19.1 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 15/65 (23%), Positives = 27/65 (41%)
Query: 134 RRQAF--IYDL-CKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQPNIRRSGL 190
R++ F I+++ GKN+ I D D + ++ +G+ G G+
Sbjct: 239 RKEGFAKIFEIPLSGKNLQFMEQTGKIRSDVLRDTSKKHHEDEGYDGDSDSSNESEVEGI 298
Query: 191 DLTAE 195
DL E
Sbjct: 299 DLFEE 303
>SGD|S000005868 [details] [associations]
symbol:RPA190 "RNA polymerase I largest subunit A190"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IMP;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IGI;IMP] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 SGD:S000005868 EMBL:BK006948 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:X95720 GO:GO:0005736 GO:GO:0003899 GO:GO:0042790
eggNOG:COG0086 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
HOGENOM:HOG000205401 GeneTree:ENSGT00550000074861 OrthoDB:EOG432464
EMBL:J03530 EMBL:Z75249 PIR:S67250 RefSeq:NP_014986.3
RefSeq:NP_620389.3 ProteinModelPortal:P10964 SMR:P10964
DIP:DIP-999N IntAct:P10964 MINT:MINT-613626 STRING:P10964
PaxDb:P10964 PeptideAtlas:P10964 EnsemblFungi:YOR341W GeneID:854519
GeneID:854523 KEGG:sce:YOR341W KEGG:sce:YOR343W-B CYGD:YOR341w
NextBio:976888 Genevestigator:P10964 GermOnline:YOR341W
Uniprot:P10964
Length = 1664
Score = 177 (67.4 bits), Expect = 1.9e-20, Sum P(3) = 1.9e-20
Identities = 33/69 (47%), Positives = 51/69 (73%)
Query: 324 SGK-PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTF 382
SGK P+ +K L+ KEG R ++MGKRV+++AR+VI+PDPN+ +++GVP A +T+
Sbjct: 448 SGKVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTY 507
Query: 383 PEIVTPFNM 391
PE VT +N+
Sbjct: 508 PEPVTAYNI 516
Score = 151 (58.2 bits), Expect = 1.9e-20, Sum P(3) = 1.9e-20
Identities = 36/98 (36%), Positives = 49/98 (50%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTCAG 71
+ V FGIL+ EIR +S + I P ++ G P GGL D G R+ C TC
Sbjct: 11 ITSVDFGILTAKEIRNLSAKQ--ITNPTVLDNLGHPVSGGLYDLALGAFLRNL-CSTCGL 67
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYC 109
+ CPGH GHI+L P ++ F + LR C +C
Sbjct: 68 DEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFC 105
Score = 44 (20.5 bits), Expect = 1.9e-20, Sum P(3) = 1.9e-20
Identities = 15/67 (22%), Positives = 23/67 (34%)
Query: 126 LKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHG---GCGRYQ 182
LK+K A L G+ G +N + + + K G CG +
Sbjct: 181 LKSKRSEYVDMAIAKALSDGRTTERGSFTATVNDERKKLVHEFHKKLLSRGKCDNCGMFS 240
Query: 183 PNIRRSG 189
P R+ G
Sbjct: 241 PKFRKDG 247
Score = 37 (18.1 bits), Expect = 5.8e-06, Sum P(3) = 5.8e-06
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 207 KIPLTGKGVLLNKKQG 222
K+P+ G L KK+G
Sbjct: 450 KVPIPGVKQALEKKEG 465
>RGD|620824 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISO;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IDA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:620824
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 KO:K02999 PANTHER:PTHR19376:SF11 CTD:25885
HOGENOM:HOG000205401 HOVERGEN:HBG017741 OrthoDB:EOG41VK23
EMBL:AF025425 IPI:IPI00199160 PIR:T14103 RefSeq:NP_113960.1
UniGene:Rn.24877 ProteinModelPortal:O54889 STRING:O54889
PhosphoSite:O54889 PRIDE:O54889 GeneID:83581 KEGG:rno:83581
UCSC:RGD:620824 InParanoid:O54889 NextBio:616111
ArrayExpress:O54889 Genevestigator:O54889 Uniprot:O54889
Length = 1716
Score = 166 (63.5 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 47/141 (33%), Positives = 78/141 (55%)
Query: 251 SQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
+QE+K+P + +D I + L+ +S + I I+ LQ HV +
Sbjct: 353 AQEQKLPCEMTEITIDKENDSSGAIDRSFLSLLPGQSLTDKLYNIW--IR-LQSHVNIVF 409
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
D+DM L ++K P I+ L+ KEG R ++MGKRVD++AR+VI PD + +++
Sbjct: 410 DSDMDKL--MLEKY--P--GIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEI 463
Query: 371 GVPRSIAQNMTFPEIVTPFNM 391
G+P A +T+P+ VTP+N+
Sbjct: 464 GIPMVFATKLTYPQPVTPWNV 484
Score = 162 (62.1 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 62/224 (27%), Positives = 97/224 (43%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVID 61
+A P R ++ + FG+ S +E++++SV I P ++ G P GL D G D
Sbjct: 2 LASKHTPWRRLQGISFGMYSAEELKKLSVKS--ITNPRYVDSLGNPSADGLYDLALGPAD 59
Query: 62 RSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKV 121
C TC + C GH GHIDL V++ K +LR C C +L P +
Sbjct: 60 SKEVCSTCVQDFNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCH-MLTCP-RAAI 117
Query: 122 RDVVLKTKGQSRRRQAFIYDLCK--GKNICEGGDE--MDINKDGAEDPNS-LQNKKQGHG 176
+V + K +Y+L + + + E D +I ++ E + LQN G
Sbjct: 118 HLLVCQLKVLDVGALQAVYELERILSRFLEETSDPSAFEIQEELEEYTSKILQNNLLGSQ 177
Query: 177 GCGRYQPNIRRSGLDLTAE-WK-HVNEDSQEKKIP--LTGKGVL 216
G + N+ S L A WK H+ K+ P TG+ V+
Sbjct: 178 GA--HVKNVCESRSKLVAHFWKTHM----AAKRCPHCKTGRSVV 215
Score = 37 (18.1 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSLQ 169
+L +G G DE + K G P+S Q
Sbjct: 241 ELPEGAPAAPGIDEAQMGKRGYLTPSSAQ 269
>UNIPROTKB|G3V7B7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CH473957
GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 UniGene:Rn.24877
Ensembl:ENSRNOT00000013587 Uniprot:G3V7B7
Length = 1716
Score = 166 (63.5 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 47/141 (33%), Positives = 78/141 (55%)
Query: 251 SQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
+QE+K+P + +D I + L+ +S + I I+ LQ HV +
Sbjct: 353 AQEQKLPCEMTEITIDKENDSSGAIDRSFLSLLPGQSLTDKLYNIW--IR-LQSHVNIVF 409
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
D+DM L ++K P I+ L+ KEG R ++MGKRVD++AR+VI PD + +++
Sbjct: 410 DSDMDKL--MLEKY--P--GIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEI 463
Query: 371 GVPRSIAQNMTFPEIVTPFNM 391
G+P A +T+P+ VTP+N+
Sbjct: 464 GIPMVFATKLTYPQPVTPWNV 484
Score = 162 (62.1 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 62/224 (27%), Positives = 97/224 (43%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVID 61
+A P R ++ + FG+ S +E++++SV I P ++ G P GL D G D
Sbjct: 2 LASKHTPWRRLQGISFGMYSAEELKKLSVKS--ITNPRYVDSLGNPSADGLYDLALGPAD 59
Query: 62 RSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKV 121
C TC + C GH GHIDL V++ K +LR C C +L P +
Sbjct: 60 SKEVCSTCVQDFNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCH-MLTCP-RAAI 117
Query: 122 RDVVLKTKGQSRRRQAFIYDLCK--GKNICEGGDE--MDINKDGAEDPNS-LQNKKQGHG 176
+V + K +Y+L + + + E D +I ++ E + LQN G
Sbjct: 118 HLLVCQLKVLDVGALQAVYELERILSRFLEETSDPSAFEIQEELEEYTSKILQNNLLGSQ 177
Query: 177 GCGRYQPNIRRSGLDLTAE-WK-HVNEDSQEKKIP--LTGKGVL 216
G + N+ S L A WK H+ K+ P TG+ V+
Sbjct: 178 GA--HVKNVCESRSKLVAHFWKTHM----AAKRCPHCKTGRSVV 215
Score = 37 (18.1 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSLQ 169
+L +G G DE + K G P+S Q
Sbjct: 241 ELPEGAPAAPGIDEAQMGKRGYLTPSSAQ 269
>ZFIN|ZDB-GENE-030131-5286 [details] [associations]
symbol:polr1a "polymerase (RNA) I polypeptide A"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 ZFIN:ZDB-GENE-030131-5286
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861 EMBL:AL929267
EMBL:CU694378 IPI:IPI00934858 Ensembl:ENSDART00000114501
ArrayExpress:E7F710 Bgee:E7F710 Uniprot:E7F710
Length = 1710
Score = 174 (66.3 bits), Expect = 8.2e-20, Sum P(2) = 8.2e-20
Identities = 37/104 (35%), Positives = 54/104 (51%)
Query: 7 KAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSR 65
+ P R ++ + FG+ S DE R++SV I P+ ++ G GL D G D
Sbjct: 6 ETPWRRLEGMSFGLFSADETRKLSVKT--ITNPQLLDNVGNAAANGLYDLALGPADNKEI 63
Query: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYC 109
C TC + + CPGHFGHI+L PV++ F K ++R C C
Sbjct: 64 CSTCMQDFSSCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSC 107
Score = 148 (57.2 bits), Expect = 8.2e-20, Sum P(2) = 8.2e-20
Identities = 34/90 (37%), Positives = 55/90 (61%)
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ V + D+DM L +K ++ L+ KEG R ++MGKRVD++AR+VI P
Sbjct: 400 LQSLVNIVFDSDMDKL--ITEK----FPGVRQLLEKKEGLFRKHMMGKRVDYAARSVICP 453
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
D + +++G+P A +T+P+ VTP+N+
Sbjct: 454 DMYIGTNEIGIPMVFATKLTYPQPVTPWNV 483
>UNIPROTKB|E1BIX2 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11 CTD:25885
GeneTree:ENSGT00550000074861 EMBL:DAAA02031123 IPI:IPI00714586
RefSeq:NP_001179805.1 UniGene:Bt.52712 PRIDE:E1BIX2
Ensembl:ENSBTAT00000008496 GeneID:536316 KEGG:bta:536316
NextBio:20876927 Uniprot:E1BIX2
Length = 1717
Score = 164 (62.8 bits), Expect = 9.8e-20, Sum P(2) = 9.8e-20
Identities = 39/112 (34%), Positives = 55/112 (49%)
Query: 3 MADSK-APLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVI 60
M SK P R ++ + FG+ S +E++++SV I P ++ G P + GL D G
Sbjct: 1 MLGSKNMPWRRLQGISFGMYSAEELKKLSVKS--ITNPRYLDSLGNPSVNGLYDLALGPA 58
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKL 112
D C TC + T C GH GHIDL V++ K +LR C C L
Sbjct: 59 DSKEVCSTCVQDFTNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCHML 110
Score = 158 (60.7 bits), Expect = 9.8e-20, Sum P(2) = 9.8e-20
Identities = 36/90 (40%), Positives = 58/90 (64%)
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ HV + D++M L M+K P I+ L+ K+G R ++MGKRVD++AR+VI P
Sbjct: 394 LQSHVNIVFDSEMDKL--MMEKY--P--GIRQILEKKDGLFRKHMMGKRVDYAARSVICP 447
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
D + +++G+P A +T+P+ VTP+N+
Sbjct: 448 DMYISTNEIGIPMVFATKLTYPQPVTPWNV 477
Score = 38 (18.4 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 20/83 (24%), Positives = 32/83 (38%)
Query: 140 YDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHG-GCGRYQPNIRRSGLDLTAEWKH 198
Y CK N GDEM+ A P S + + + C Q + + G L
Sbjct: 579 YANCKAYNADFDGDEMN-----AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAG---- 629
Query: 199 VNEDSQEKKIPLTGKGVLLNKKQ 221
+ +D +T +G N++Q
Sbjct: 630 LIQDHMVSGANMTIRGCFFNREQ 652
>UNIPROTKB|F1SVC3 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
OMA:CLLNETT PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:CU570839 Ensembl:ENSSSCT00000009008 Uniprot:F1SVC3
Length = 1723
Score = 160 (61.4 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 36/90 (40%), Positives = 58/90 (64%)
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ HV + D++M L M+K P I+ L+ K+G R ++MGKRVD++AR+VI P
Sbjct: 398 LQSHVNIVFDSEMDKL--TMEKY--P--GIRQILEKKDGLFRKHMMGKRVDYAARSVICP 451
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
D + +++G+P A +T+P+ VTP+N+
Sbjct: 452 DMYINTNEIGIPMVFATKLTYPQPVTPWNV 481
Score = 159 (61.0 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 38/112 (33%), Positives = 54/112 (48%)
Query: 3 MADSK-APLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVI 60
M SK P R ++ + FG+ S +E++++SV I P ++ G P GL D G
Sbjct: 1 MLGSKNMPWRRLQGISFGMYSAEELKKLSVKS--ITNPRYLDSLGNPSANGLYDLALGPP 58
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKL 112
D C TC + CPGH GHI+L V++ K +LR C C L
Sbjct: 59 DSKEVCSTCVQDFNNCPGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHML 110
>MGI|MGI:1096397 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009303 "rRNA transcription" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] Reactome:REACT_78136 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 MGI:MGI:1096397 GO:GO:0005654 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086
CleanEx:MM_RPA1 Reactome:REACT_86751 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 CTD:25885 HOGENOM:HOG000205401
HOVERGEN:HBG017741 OrthoDB:EOG41VK23 ChiTaRS:POLR1A EMBL:AF000938
EMBL:BC053744 IPI:IPI00313726 PIR:T13961 RefSeq:NP_033114.3
UniGene:Mm.135581 ProteinModelPortal:O35134 SMR:O35134
STRING:O35134 PhosphoSite:O35134 PaxDb:O35134 PRIDE:O35134
Ensembl:ENSMUST00000055296 GeneID:20019 KEGG:mmu:20019
UCSC:uc009chv.2 GeneTree:ENSGT00550000074861 InParanoid:O35134
NextBio:297531 Bgee:O35134 Genevestigator:O35134
GermOnline:ENSMUSG00000049553 Uniprot:O35134
Length = 1717
Score = 159 (61.0 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 36/90 (40%), Positives = 58/90 (64%)
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ HV + D++M L ++K P I+ L+ KEG R ++MGKRVD++AR+VI P
Sbjct: 401 LQSHVNIVFDSEMDKL--MLEKY--P--GIRQILEKKEGLFRKHMMGKRVDYAARSVICP 454
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
D + +++G+P A +T+P+ VTP+N+
Sbjct: 455 DMYINTNEIGIPMVFATKLTYPQPVTPWNV 484
Score = 159 (61.0 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 55/202 (27%), Positives = 89/202 (44%)
Query: 3 MADSKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVID 61
+A P R ++ + FG+ S +E++++SV I P ++ G P GL D G D
Sbjct: 2 LASKHTPWRRLQGISFGMYSAEELKKLSVKS--ITNPRYVDYLGNPSANGLYDLALGPAD 59
Query: 62 RSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKV 121
C TC + C GH GHIDL V++ K +LR C C +L P +
Sbjct: 60 SKEVCATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCH-MLTCP-RAAI 117
Query: 122 RDVVLKTKGQSRRRQAFIYDLCK--GKNICEGGDE--MDINKDGAEDPNS-LQNKKQGHG 176
++ + + +Y+L + + + E GD +I ++ E + LQN G
Sbjct: 118 YLLISQLRVLEVGALQAVYELERILSRFLEETGDPSAFEIQEELEEYTSKILQNNLLGSQ 177
Query: 177 GCGRYQPNIRRSGLDLTAE-WK 197
G + N+ S L A+ WK
Sbjct: 178 GT--HVKNVCESRSKLVAQFWK 197
>WB|WBGene00012999 [details] [associations]
symbol:rpoa-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
HSSP:P04050 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:Z83219 EMBL:AL032648 EMBL:Z93392
PIR:A88355 PIR:T19606 RefSeq:NP_001022450.1
ProteinModelPortal:G5ED21 SMR:G5ED21 PRIDE:G5ED21
EnsemblMetazoa:Y48E1A.1a GeneID:175015 KEGG:cel:CELE_Y48E1A.1
CTD:175015 WormBase:Y48E1A.1a NextBio:886412 Uniprot:G5ED21
Length = 1737
Score = 165 (63.1 bits), Expect = 8.6e-19, Sum P(2) = 8.6e-19
Identities = 42/113 (37%), Positives = 63/113 (55%)
Query: 281 ELIRNESSGAATHVIAENIKM-LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKE 339
ELI N G + + + LQ + D D L + + S + IK L+ K+
Sbjct: 411 ELIANRVRGKTINAQMHDAYLQLQLRANAIFDQD---LNKGDRDS---IAGIKQILEKKQ 464
Query: 340 GRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
G R ++MGKRV+F+ R+VITPDP L ID++G+P A+ +TF E V FN++
Sbjct: 465 GLFRMHMMGKRVNFACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNVN 517
Score = 148 (57.2 bits), Expect = 8.6e-19, Sum P(2) = 8.6e-19
Identities = 36/91 (39%), Positives = 46/91 (50%)
Query: 23 PDEIRRMSVTEGGIKFPETM-EGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHFG 81
P EI ++SV + I +T E G P GGL DP G + C TC CPGH G
Sbjct: 25 PHEIDKLSVLK--ITQTKTFDEVGHPIAGGLYDPILGPDNTFDMCMTCNQYERHCPGHMG 82
Query: 82 HIDLAKPVFHVGFVTKTIKILRCVCFYCSKL 112
HI LA PVF+ T +L+ C +C +L
Sbjct: 83 HIQLAVPVFNPLLFQFTYNLLKGSCVHCHRL 113
>UNIPROTKB|B9ZVN9 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AC009309 PANTHER:PTHR19376:SF11 HGNC:HGNC:17264
HOGENOM:HOG000205401 ChiTaRS:POLR1A EMBL:AC012511 IPI:IPI00916060
ProteinModelPortal:B9ZVN9 STRING:B9ZVN9 Ensembl:ENST00000409681
ArrayExpress:B9ZVN9 Bgee:B9ZVN9 Uniprot:B9ZVN9
Length = 1659
Score = 160 (61.4 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 37/90 (41%), Positives = 57/90 (63%)
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ HV + D++M L M K P I+ L+ KEG R ++MGKRVD++AR+VI P
Sbjct: 394 LQSHVNIVFDSEMDKL--MMDKY--P--GIRQILEKKEGLFRKHMMGKRVDYAARSVICP 447
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
D + +++G+P A +T+P+ VTP+N+
Sbjct: 448 DMYINTNEIGIPMVFATKLTYPQPVTPWNV 477
Score = 152 (58.6 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 34/105 (32%), Positives = 51/105 (48%)
Query: 9 PLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQ 67
P R ++ + FG+ S +E++++SV I P ++ G P GL D G D C
Sbjct: 8 PWRRLQGISFGMYSAEELKKLSVKS--ITNPRYLDSLGNPSANGLYDLALGPADSKEVCS 65
Query: 68 TCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKL 112
TC + + C GH GHI+L V++ K +LR C C L
Sbjct: 66 TCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHML 110
Score = 37 (18.1 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNL----MGKRVD------FSARTVITPDPNLRI 367
QK + +KA+K + + GR G M +D + + PDP+L +
Sbjct: 1094 QKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSV 1149
>UNIPROTKB|O95602 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase I subunit RPA1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=NAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=TAS] [GO:0006361 "transcription
initiation from RNA polymerase I promoter" evidence=TAS]
[GO:0006362 "transcription elongation from RNA polymerase I
promoter" evidence=TAS] [GO:0006363 "termination of RNA polymerase
I transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CH471053
GO:GO:0005654 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0009303
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 EMBL:U33460 EMBL:AH007280 EMBL:AK302458
EMBL:BC117173 EMBL:BC126303 EMBL:AL117467 IPI:IPI00031960
PIR:T17252 RefSeq:NP_056240.2 UniGene:Hs.531818
ProteinModelPortal:O95602 SMR:O95602 DIP:DIP-27537N IntAct:O95602
MINT:MINT-111492 STRING:O95602 PhosphoSite:O95602
SWISS-2DPAGE:O95602 PaxDb:O95602 PRIDE:O95602
Ensembl:ENST00000263857 GeneID:25885 KEGG:hsa:25885 UCSC:uc002sqs.3
CTD:25885 GeneCards:GC02M086253 H-InvDB:HIX0002233 HGNC:HGNC:17264
HPA:CAB010145 neXtProt:NX_O95602 PharmGKB:PA134891380
HOGENOM:HOG000205401 HOVERGEN:HBG017741 InParanoid:O95602
OrthoDB:EOG41VK23 ChiTaRS:POLR1A GenomeRNAi:25885 NextBio:47304
PMAP-CutDB:O95602 ArrayExpress:O95602 Bgee:O95602 CleanEx:HS_POLR1A
Genevestigator:O95602 GermOnline:ENSG00000068654 Uniprot:O95602
Length = 1720
Score = 160 (61.4 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 37/90 (41%), Positives = 57/90 (63%)
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ HV + D++M L M K P I+ L+ KEG R ++MGKRVD++AR+VI P
Sbjct: 394 LQSHVNIVFDSEMDKL--MMDKY--P--GIRQILEKKEGLFRKHMMGKRVDYAARSVICP 447
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
D + +++G+P A +T+P+ VTP+N+
Sbjct: 448 DMYINTNEIGIPMVFATKLTYPQPVTPWNV 477
Score = 152 (58.6 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 34/105 (32%), Positives = 51/105 (48%)
Query: 9 PLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQ 67
P R ++ + FG+ S +E++++SV I P ++ G P GL D G D C
Sbjct: 8 PWRRLQGISFGMYSAEELKKLSVKS--ITNPRYLDSLGNPSANGLYDLALGPADSKEVCS 65
Query: 68 TCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKL 112
TC + + C GH GHI+L V++ K +LR C C L
Sbjct: 66 TCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHML 110
Score = 37 (18.1 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 322 QKSGKPLKAIKARLKGKEGRIRGNL----MGKRVD------FSARTVITPDPNLRI 367
QK + +KA+K + + GR G M +D + + PDP+L +
Sbjct: 1094 QKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSV 1149
>UNIPROTKB|J9P5G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K02999 PANTHER:PTHR19376:SF11
CTD:25885 GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
RefSeq:XP_532976.3 Ensembl:ENSCAFT00000047500 GeneID:475766
KEGG:cfa:475766 Uniprot:J9P5G4
Length = 1717
Score = 159 (61.0 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 36/90 (40%), Positives = 58/90 (64%)
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ HV + D++M L M+K P I+ L+ K+G R ++MGKRVD++AR+VI P
Sbjct: 394 LQSHVNIVFDSEMDKL--MMEKY--P--GIRQILEKKDGLFRKHMMGKRVDYAARSVICP 447
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
D + +++G+P A +T+P+ VTP+N+
Sbjct: 448 DMYINTNEIGIPMVFATKLTYPQPVTPWNV 477
Score = 153 (58.9 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 37/112 (33%), Positives = 53/112 (47%)
Query: 3 MADSK-APLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVI 60
M SK P R ++ + FG+ S +E++++SV I P ++ G P GL D G
Sbjct: 1 MLGSKNMPWRRLQGISFGMYSAEELKKLSVKS--ITNPRYLDSLGNPSANGLYDLALGPA 58
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKL 112
D C TC + C GH GHI+L V++ K +LR C C L
Sbjct: 59 DSKEVCSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHML 110
>UNIPROTKB|E2R0G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
Ensembl:ENSCAFT00000012228 Uniprot:E2R0G4
Length = 1746
Score = 159 (61.0 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 36/90 (40%), Positives = 58/90 (64%)
Query: 302 LQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
LQ HV + D++M L M+K P I+ L+ K+G R ++MGKRVD++AR+VI P
Sbjct: 406 LQSHVNIVFDSEMDKL--MMEKY--P--GIRQILEKKDGLFRKHMMGKRVDYAARSVICP 459
Query: 362 DPNLRIDQVGVPRSIAQNMTFPEIVTPFNM 391
D + +++G+P A +T+P+ VTP+N+
Sbjct: 460 DMYINTNEIGIPMVFATKLTYPQPVTPWNV 489
Score = 153 (58.9 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 37/112 (33%), Positives = 53/112 (47%)
Query: 3 MADSK-APLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVI 60
M SK P R ++ + FG+ S +E++++SV I P ++ G P GL D G
Sbjct: 1 MLGSKNMPWRRLQGISFGMYSAEELKKLSVKS--ITNPRYLDSLGNPSANGLYDLALGPA 58
Query: 61 DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKL 112
D C TC + C GH GHI+L V++ K +LR C C L
Sbjct: 59 DSKEVCSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHML 110
>TAIR|locus:2076661 [details] [associations]
symbol:NRPA1 "nuclear RNA polymerase A1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA] [GO:0006406
"mRNA export from nucleus" evidence=RCA] [GO:0006606 "protein
import into nucleus" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0009506 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
EMBL:AL049660 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 HSSP:P04050 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 IPI:IPI00546513
PIR:T06754 RefSeq:NP_191325.1 UniGene:At.50286
ProteinModelPortal:Q9SVY0 SMR:Q9SVY0 IntAct:Q9SVY0 STRING:Q9SVY0
PaxDb:Q9SVY0 PRIDE:Q9SVY0 EnsemblPlants:AT3G57660.1 GeneID:824935
KEGG:ath:AT3G57660 TAIR:At3g57660 InParanoid:Q9SVY0
PhylomeDB:Q9SVY0 ProtClustDB:CLSN2684581 Genevestigator:Q9SVY0
Uniprot:Q9SVY0
Length = 1670
Score = 157 (60.3 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 56/213 (26%), Positives = 105/213 (49%)
Query: 186 RRSGLDLTAEWKHVNEDSQEKKIPLTGKGVLLNKKQG-HGGCGRYQPNIRRSG---LDLT 241
R ++ AE++ N S+ +P + +L + Q H C + ++ +SG +D +
Sbjct: 283 REKSTEVAAEFEEHN--SKRDLLPSEVRNILKHLWQNEHEFCS-FIGDLWQSGSEKIDYS 339
Query: 242 AEW-KHVNEDSQEKKIPLTG-KGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENI 299
+ + V + + P TG V+ T L +I+ NN L A T+ + ++
Sbjct: 340 MFFLESVLVPPTKFRPPTTGGDSVMEHPQTVGLNKVIESNNIL-----GNACTNKLDQSK 394
Query: 300 KMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 359
+ ++ + N + A +S + I L+ KEG R +MGKRV+ + R+VI
Sbjct: 395 VIFRWRNLQESVNVLFDSKTATVQSQRDSSGICQLLEKKEGLFRQKMMGKRVNHACRSVI 454
Query: 360 TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
+PDP + ++ +G+P A +T+PE VTP+N++
Sbjct: 455 SPDPYIAVNDIGIPPCFALKLTYPERVTPWNVE 487
Score = 150 (57.9 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 31/105 (29%), Positives = 49/105 (46%)
Query: 13 VKKVQFGILSPDEIRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTCAG 71
V+ V+F ++ ++R+ S + + P + G P GGL D + G D C +C
Sbjct: 27 VESVRFSFMTEQDVRKHSFLK--VTSPILHDNVGNPFPGGLYDLKLGPKDDKQACNSCGQ 84
Query: 72 NMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSP 116
CPGH GHI+L P++H L+ CF+C + P
Sbjct: 85 LKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKP 129
>UNIPROTKB|F1LQN7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF05000 SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 PANTHER:PTHR19376:SF11 IPI:IPI00389616
Ensembl:ENSRNOT00000013417 ArrayExpress:F1LQN7 Uniprot:F1LQN7
Length = 1011
Score = 166 (63.5 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 47/141 (33%), Positives = 78/141 (55%)
Query: 251 SQEKKIPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLT 310
+QE+K+P + +D I + L+ +S + I I+ LQ HV +
Sbjct: 374 AQEQKLPCEMTEITIDKENDSSGAIDRSFLSLLPGQSLTDKLYNIW--IR-LQSHVNIVF 430
Query: 311 DNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 370
D+DM L ++K P I+ L+ KEG R ++MGKRVD++AR+VI PD + +++
Sbjct: 431 DSDMDKL--MLEKY--P--GIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEI 484
Query: 371 GVPRSIAQNMTFPEIVTPFNM 391
G+P A +T+P+ VTP+N+
Sbjct: 485 GIPMVFATKLTYPQPVTPWNV 505
Score = 130 (50.8 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 57/201 (28%), Positives = 84/201 (41%)
Query: 26 IRRMSVTEGGIKFPETMEG-GRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHFGHID 84
IR++SV I P ++ G P GL D G D C TC + C GH GHID
Sbjct: 46 IRKLSVKS--ITNPRYVDSLGNPSADGLYDLALGPADSKEVCSTCVQDFNNCSGHLGHID 103
Query: 85 LAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQAFIYDLCK 144
L V++ K +LR C C +L P + +V + K +Y+L +
Sbjct: 104 LPLTVYNPLLFDKLYLLLRGSCLNCH-MLTCP-RAAIHLLVCQLKVLDVGALQAVYELER 161
Query: 145 --GKNICEGGDE--MDINKDGAEDPNS-LQNKKQGHGGCGRYQPNIRRSGLDLTAE-WK- 197
+ + E D +I ++ E + LQN G G + N+ S L A WK
Sbjct: 162 ILSRFLEETSDPSAFEIQEELEEYTSKILQNNLLGSQGA--HVKNVCESRSKLVAHFWKT 219
Query: 198 HVNEDSQEKKIP--LTGKGVL 216
H+ K+ P TG+ V+
Sbjct: 220 HM----AAKRCPHCKTGRSVV 236
Score = 37 (18.1 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 141 DLCKGKNICEGGDEMDINKDGAEDPNSLQ 169
+L +G G DE + K G P+S Q
Sbjct: 262 ELPEGAPAAPGIDEAQMGKRGYLTPSSAQ 290
>UNIPROTKB|Q9KV29 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
PIR:G82336 RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
PATRIC:20079715 Uniprot:Q9KV29
Length = 1401
Score = 210 (79.0 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 53/131 (40%), Positives = 71/131 (54%)
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+PL G DL +I NN L R A ++ +MLQ V L DN
Sbjct: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQESVDALLDNGRR 312
Query: 316 GLPRAMQKSGK-PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
G RA+ S K PLK++ +KGK+GR R NL+GKRVD+S R+VIT P LR+ Q G+P+
Sbjct: 313 G--RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPK 370
Query: 375 SIAQNMTFPEI 385
+A + P I
Sbjct: 371 KMALELFKPFI 381
Score = 61 (26.5 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 66 CQTCAGNMTECP---GHFGHIDLAKPVFHVGFV 95
C+ C +T+ GHI+LA PV H+ F+
Sbjct: 85 CEKCGVEVTQTKVRRDRMGHIELASPVAHIWFL 117
Score = 54 (24.1 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 16 VQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPR 56
++ G+ SPD IR S G +K PET+ +P+ GL R
Sbjct: 20 IKIGLASPDMIRSWSF--GEVKKPETINYRTFKPERDGLFCAR 60
>TIGR_CMR|VC_0329 [details] [associations]
symbol:VC_0329 "DNA-directed RNA polymerase, beta' subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G82336
RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
PATRIC:20079715 Uniprot:Q9KV29
Length = 1401
Score = 210 (79.0 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 53/131 (40%), Positives = 71/131 (54%)
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+PL G DL +I NN L R A ++ +MLQ V L DN
Sbjct: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQESVDALLDNGRR 312
Query: 316 GLPRAMQKSGK-PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
G RA+ S K PLK++ +KGK+GR R NL+GKRVD+S R+VIT P LR+ Q G+P+
Sbjct: 313 G--RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPK 370
Query: 375 SIAQNMTFPEI 385
+A + P I
Sbjct: 371 KMALELFKPFI 381
Score = 61 (26.5 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 66 CQTCAGNMTECP---GHFGHIDLAKPVFHVGFV 95
C+ C +T+ GHI+LA PV H+ F+
Sbjct: 85 CEKCGVEVTQTKVRRDRMGHIELASPVAHIWFL 117
Score = 54 (24.1 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 16 VQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPR 56
++ G+ SPD IR S G +K PET+ +P+ GL R
Sbjct: 20 IKIGLASPDMIRSWSF--GEVKKPETINYRTFKPERDGLFCAR 60
>TIGR_CMR|SO_0225 [details] [associations]
symbol:SO_0225 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:NP_715865.1 ProteinModelPortal:Q8EK73
SMR:Q8EK73 PRIDE:Q8EK73 GeneID:1168108 KEGG:son:SO_0225
PATRIC:23520143 Uniprot:Q8EK73
Length = 1405
Score = 212 (79.7 bits), Expect = 2.6e-16, Sum P(3) = 2.6e-16
Identities = 53/131 (40%), Positives = 71/131 (54%)
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+PL G DL +I NN L R A ++ +MLQ V L DN
Sbjct: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQESVDALLDNGRR 312
Query: 316 GLPRAMQKSGK-PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
G RA+ S K PLK++ +KGK+GR R NL+GKRVD+S R+VIT P LR+ Q G+P+
Sbjct: 313 G--RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPK 370
Query: 375 SIAQNMTFPEI 385
+A + P I
Sbjct: 371 KMALELFKPFI 381
Score = 60 (26.2 bits), Expect = 2.6e-16, Sum P(3) = 2.6e-16
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 66 CQTCAGNMTECP---GHFGHIDLAKPVFHVGFV 95
C+ C +T+ GHI+LA PV H+ F+
Sbjct: 85 CEKCGVEVTQTKVRRERMGHIELASPVAHIWFL 117
Score = 52 (23.4 bits), Expect = 2.6e-16, Sum P(3) = 2.6e-16
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 16 VQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPR 56
++ G+ SPD IR S G +K PET+ +P+ GL R
Sbjct: 20 IKIGLASPDLIRSWSF--GEVKKPETINYRTFKPEREGLFCAR 60
>TIGR_CMR|CHY_2317 [details] [associations]
symbol:CHY_2317 "DNA-directed RNA polymerase, beta'
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 InterPro:IPR012756
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 KO:K03046 TIGRFAMs:TIGR02388 OMA:DINDKHI
ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 HOGENOM:HOG000218387
RefSeq:YP_361126.1 ProteinModelPortal:Q3A9Q8 SMR:Q3A9Q8
STRING:Q3A9Q8 PRIDE:Q3A9Q8 GeneID:3727667 KEGG:chy:CHY_2317
PATRIC:21277703 BioCyc:CHYD246194:GJCN-2316-MONOMER Uniprot:Q3A9Q8
Length = 1152
Score = 202 (76.2 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 48/131 (36%), Positives = 68/131 (51%)
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+ L G DL +I NN L R GA ++ +MLQ V L DN
Sbjct: 242 VQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNGRR 301
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G P +PLK++ LKGK+GR R NL+GKRVD+S R+VI P L++ Q G+P+
Sbjct: 302 GRP-VTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKE 360
Query: 376 IAQNMTFPEIV 386
+A + P ++
Sbjct: 361 MALELFKPFVM 371
Score = 62 (26.9 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 14 KKVQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPR 56
++++ G+ SPD+IR S G +K PET+ +P+ GL R
Sbjct: 8 ERIKIGLASPDQIRAWS--HGEVKKPETINYRTLKPERDGLFCER 50
Score = 51 (23.0 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 66 CQTCAGNMTECP---GHFGHIDLAKPVFHVGF 94
C C +T GHI+LA PV H+ +
Sbjct: 75 CDRCGVEVTRSKVRRERLGHIELAAPVSHIWY 106
>TIGR_CMR|BA_0103 [details] [associations]
symbol:BA_0103 "DNA-directed RNA polymerase, beta' subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 EMBL:X89230 RefSeq:NP_842671.2
RefSeq:YP_016708.1 RefSeq:YP_026389.1 ProteinModelPortal:P77819
IntAct:P77819 DNASU:1086436 EnsemblBacteria:EBBACT00000011911
EnsemblBacteria:EBBACT00000018208 EnsemblBacteria:EBBACT00000020960
GeneID:1086436 GeneID:2818165 GeneID:2851002 KEGG:ban:BA_0103
KEGG:bar:GBAA_0103 KEGG:bat:BAS0103 HOGENOM:HOG000218387
BioCyc:BANT260799:GJAJ-114-MONOMER
BioCyc:BANT261594:GJ7F-116-MONOMER Uniprot:P77819
Length = 1203
Score = 207 (77.9 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 49/131 (37%), Positives = 70/131 (53%)
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+ L G DL +I NN L R GA + ++ +MLQ V L DN
Sbjct: 242 VQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGRR 301
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G P +PLK++ LKGK+GR R NL+GKRVD+S R+VI PNL++ Q G+P+
Sbjct: 302 GRP-VTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE 360
Query: 376 IAQNMTFPEIV 386
+A + P ++
Sbjct: 361 MALELFKPFVM 371
Score = 55 (24.4 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 16 VQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPR 56
++ G+ SPD+IR S G +K PET+ +P+ GL R
Sbjct: 10 MKIGLASPDKIRSWSY--GEVKKPETINYRTLKPEKDGLFCER 50
Score = 52 (23.4 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 66 CQTCAGNMTECP---GHFGHIDLAKPVFHVGF 94
C C +T GHI+LA PV H+ +
Sbjct: 75 CDRCGVEVTRAKVRRERMGHIELAAPVSHIWY 106
>TIGR_CMR|CPS_4768 [details] [associations]
symbol:CPS_4768 "DNA-directed RNA polymerase, beta'
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_271412.1 ProteinModelPortal:Q47UW0
SMR:Q47UW0 STRING:Q47UW0 PRIDE:Q47UW0 GeneID:3519900
KEGG:cps:CPS_4768 PATRIC:21472353
BioCyc:CPSY167879:GI48-4774-MONOMER Uniprot:Q47UW0
Length = 1406
Score = 206 (77.6 bits), Expect = 3.4e-15, Sum P(3) = 3.4e-15
Identities = 52/131 (39%), Positives = 71/131 (54%)
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+PL G DL +I NN L R A ++ +MLQ V L DN
Sbjct: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRMLQESVDALLDNGRR 312
Query: 316 GLPRAMQKSGK-PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
G RA+ S K PLK++ +KGK+GR R NL+GKRVD+S R+VIT P L++ Q G+P+
Sbjct: 313 G--RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPTLKLHQCGLPK 370
Query: 375 SIAQNMTFPEI 385
+A + P I
Sbjct: 371 KMALELFKPFI 381
Score = 56 (24.8 bits), Expect = 3.4e-15, Sum P(3) = 3.4e-15
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 66 CQTCAGNMTECP---GHFGHIDLAKPVFHVGFV 95
C+ C +T GHI+LA PV H+ F+
Sbjct: 85 CEKCGVEVTLTKVRRDRMGHIELASPVAHIWFL 117
Score = 52 (23.4 bits), Expect = 3.4e-15, Sum P(3) = 3.4e-15
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 16 VQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPR 56
++ G+ SPD +R S G +K PET+ +P+ GL R
Sbjct: 20 IRIGLASPDLVRSWSF--GEVKKPETINYRTFKPERDGLFCAR 60
>UNIPROTKB|P37871 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0046677
GO:GO:0006351 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
EMBL:D64127 EMBL:L24376 KO:K03046 ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 HOGENOM:HOG000218387 EMBL:L43593 PIR:G69698
RefSeq:NP_387989.2 ProteinModelPortal:P37871 SMR:P37871
DIP:DIP-49022N IntAct:P37871 PRIDE:P37871
EnsemblBacteria:EBBACT00000003012 GeneID:935977 KEGG:bsu:BSU01080
PATRIC:18971725 GenoList:BSU01080 BioCyc:BSUB:BSU01080-MONOMER
Uniprot:P37871
Length = 1199
Score = 202 (76.2 bits), Expect = 9.2e-15, Sum P(3) = 9.2e-15
Identities = 48/131 (36%), Positives = 70/131 (53%)
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+ L G DL +I NN L R GA + ++ +MLQ V L DN
Sbjct: 242 VQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGRR 301
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G P +PLK++ LKGK+GR R NL+GKRVD+S R+VI P+L++ Q G+P+
Sbjct: 302 GRP-VTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPHLKMYQCGLPKE 360
Query: 376 IAQNMTFPEIV 386
+A + P ++
Sbjct: 361 MALELFKPFVM 371
Score = 54 (24.1 bits), Expect = 9.2e-15, Sum P(3) = 9.2e-15
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 16 VQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPR 56
+ G+ SPD+IR S G +K PET+ +P+ GL R
Sbjct: 10 MNIGLASPDKIRSWSF--GEVKKPETINYRTLKPEKDGLFCER 50
Score = 52 (23.4 bits), Expect = 9.2e-15, Sum P(3) = 9.2e-15
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 66 CQTCAGNMTECP---GHFGHIDLAKPVFHVGF 94
C C +T GHI+LA PV H+ +
Sbjct: 75 CDRCGVEVTRAKVRRERMGHIELAAPVSHIWY 106
>UNIPROTKB|P0A8T7 [details] [associations]
symbol:rpoC "RNA polymerase, beta' subunit" species:83333
"Escherichia coli K-12" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IDA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005737 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351 EMBL:U00006
Gene3D:2.40.40.20 InterPro:IPR009010 PDB:3IYD PDBsum:3IYD
GO:GO:0003899 EMBL:V00339 eggNOG:COG0086 PDB:3LU0 PDBsum:3LU0
EMBL:V00340 EMBL:M38293 EMBL:M38303 KO:K03046 HOGENOM:HOG000218386
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 EMBL:M38305
EMBL:M38288 PIR:A00695 RefSeq:NP_418415.1 RefSeq:YP_491473.1
PDB:2AUK PDB:2LMC PDBsum:2AUK PDBsum:2LMC ProteinModelPortal:P0A8T7
SMR:P0A8T7 DIP:DIP-35803N IntAct:P0A8T7 MINT:MINT-1220667
PhosSite:P010445 PaxDb:P0A8T7 PRIDE:P0A8T7
EnsemblBacteria:EBESCT00000001546 EnsemblBacteria:EBESCT00000001547
EnsemblBacteria:EBESCT00000001548 EnsemblBacteria:EBESCT00000018189
GeneID:12933965 GeneID:948487 KEGG:ecj:Y75_p3209 KEGG:eco:b3988
PATRIC:32123497 EchoBASE:EB0888 EcoGene:EG10895
BioCyc:EcoCyc:RPOC-MONOMER BioCyc:ECOL316407:JW3951-MONOMER
BioCyc:MetaCyc:RPOC-MONOMER EvolutionaryTrace:P0A8T7
Genevestigator:P0A8T7 Uniprot:P0A8T7
Length = 1407
Score = 209 (78.6 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 53/131 (40%), Positives = 71/131 (54%)
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+PL G DL +I NN L R A ++ +MLQ V L DN
Sbjct: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRR 312
Query: 316 GLPRAMQKSGK-PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
G RA+ S K PLK++ +KGK+GR R NL+GKRVD+S R+VIT P LR+ Q G+P+
Sbjct: 313 G--RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPK 370
Query: 375 SIAQNMTFPEI 385
+A + P I
Sbjct: 371 KMALELFKPFI 381
Score = 56 (24.8 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 66 CQTCAGNMTECP---GHFGHIDLAKPVFHVGFV 95
C+ C +T+ GHI+LA P H+ F+
Sbjct: 85 CEKCGVEVTQTKVRRERMGHIELASPTAHIWFL 117
>TIGR_CMR|SPO_3507 [details] [associations]
symbol:SPO_3507 "DNA-directed RNA polymerase, beta'
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_168702.1 ProteinModelPortal:Q5LMQ6
SMR:Q5LMQ6 PRIDE:Q5LMQ6 GeneID:3196349 KEGG:sil:SPO3507
PATRIC:23380483 Uniprot:Q5LMQ6
Length = 1413
Score = 201 (75.8 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 51/131 (38%), Positives = 69/131 (52%)
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+PL G DL +I NN L R A ++ +MLQ V L DN
Sbjct: 256 VPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRMLQESVDALFDNGRR 315
Query: 316 GLPRAMQKSGK-PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
G R + + K PLK++ LKGK+GR R NL+GKRVDFS R+VI P L++ Q G+P+
Sbjct: 316 G--RVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVTGPELKLHQCGLPK 373
Query: 375 SIAQNMTFPEI 385
+A + P I
Sbjct: 374 KMALELFKPFI 384
Score = 52 (23.4 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 81 GHIDLAKPVFHVGFV 95
GHI+LA PV H+ F+
Sbjct: 105 GHIELAAPVAHIWFL 119
>UNIPROTKB|P0A674 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006351 EMBL:BX842574
Gene3D:2.40.40.20 InterPro:IPR009010 DrugBank:DB01045 GO:GO:0003899
eggNOG:COG0086 EMBL:L27989 KO:K03046 HOGENOM:HOG000218386
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G70535
RefSeq:NP_215182.1 RefSeq:NP_335108.1 RefSeq:YP_006514010.1
ProteinModelPortal:P0A674 SMR:P0A674 IntAct:P0A674 PRIDE:P0A674
EnsemblBacteria:EBMYCT00000001410 EnsemblBacteria:EBMYCT00000072799
GeneID:13318555 GeneID:888177 GeneID:925980 KEGG:mtc:MT0696
KEGG:mtu:Rv0668 KEGG:mtv:RVBD_0668 PATRIC:18123251
TubercuList:Rv0668 DrugBank:DB01201 Uniprot:P0A674
Length = 1316
Score = 198 (74.8 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 48/131 (36%), Positives = 68/131 (51%)
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+ L G DL +I NN L R GA ++ +MLQ V L DN
Sbjct: 328 VQLDGGRFATSDLNDLYRRVINRNNRLKRLIDLGAPEIIVNNEKRMLQESVDALFDNGRR 387
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G P +PLK++ LKGK+GR R NL+GKRVD+S R+VI P L++ Q G+P+
Sbjct: 388 GRP-VTGPGNRPLKSLSDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKL 446
Query: 376 IAQNMTFPEIV 386
+A + P ++
Sbjct: 447 MALELFKPFVM 457
Score = 54 (24.1 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 66 CQTCAGNMTECP---GHFGHIDLAKPVFHVGF 94
C+ C +T GHI+LA PV H+ +
Sbjct: 75 CERCGVEVTRAKVRRERMGHIELAAPVTHIWY 106
>TIGR_CMR|CBU_0232 [details] [associations]
symbol:CBU_0232 "DNA-directed RNA polymerase beta'
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:NP_819276.1 ProteinModelPortal:Q83ET0
SMR:Q83ET0 PRIDE:Q83ET0 GeneID:1208113 KEGG:cbu:CBU_0232
PATRIC:17929155 BioCyc:CBUR227377:GJ7S-238-MONOMER Uniprot:Q83ET0
Length = 1414
Score = 191 (72.3 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 49/137 (35%), Positives = 70/137 (51%)
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+PL G DL +I NN L R A ++ +MLQ V L DN
Sbjct: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQEAVDALLDNGRR 312
Query: 316 GLPRAMQKSGK-PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
G RA+ S + LK++ +KGK GR R NL+GKRVD+S R+VI P L++ Q G+P+
Sbjct: 313 G--RAILGSNRRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPTLKLHQAGLPK 370
Query: 375 SIAQNMTFPEIVTPFNM 391
+A + P I + +
Sbjct: 371 KMALELFKPFIFSKLQL 387
Score = 53 (23.7 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 66 CQTCAGNMTECP---GHFGHIDLAKPVFHVGFV 95
C+ C +T GHI+LA PV H+ ++
Sbjct: 85 CEKCGVEVTLAKVRRERMGHIELASPVAHIWYL 117
>TIGR_CMR|DET_0604 [details] [associations]
symbol:DET_0604 "DNA-directed RNA polymerase, beta'
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
HOGENOM:HOG000218387 RefSeq:YP_181346.1 ProteinModelPortal:Q3Z8V3
SMR:Q3Z8V3 STRING:Q3Z8V3 PRIDE:Q3Z8V3 GeneID:3230059
KEGG:det:DET0604 PATRIC:21608279 BioCyc:DETH243164:GJNF-605-MONOMER
Uniprot:Q3Z8V3
Length = 1295
Score = 185 (70.2 bits), Expect = 7.5e-12, Sum P(3) = 7.5e-12
Identities = 47/131 (35%), Positives = 68/131 (51%)
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+ L G DL +I NN L GA +I +MLQ V +L DN
Sbjct: 309 VQLDGGRFATSDLNDLYRRVINRNNRLQHLMEIGAPEIIIRNEKRMLQEAVDSLIDNGRR 368
Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
G A+ K K++ L+GK+GR R NL+GKRVD+S R+VI P+L++ Q G+PR
Sbjct: 369 GKSVAVNGDHKA-KSLSDLLRGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKLSQCGLPRR 427
Query: 376 IAQNMTFPEIV 386
+A + P ++
Sbjct: 428 MALELFKPFVM 438
Score = 52 (23.4 bits), Expect = 7.5e-12, Sum P(3) = 7.5e-12
Identities = 19/89 (21%), Positives = 41/89 (46%)
Query: 81 GHIDLAKPVFHVGF---VTKTIKILRCVCFYCSKLLVSPSHPKVRDVVLKTKGQSRRRQA 137
GHI+LA PV H+ F + + +L + + ++ SH ++ ++R +
Sbjct: 93 GHIELACPVGHIWFTRGIPSRVGLLLNLSTRSLERIIYYSH----FIITGVNDEAREKAI 148
Query: 138 FIYDLCKGKNICEGGDEMD--INKDGAED 164
++ + + + G E+D + + AED
Sbjct: 149 KDLEVISSQRVADKGSEVDTRVAQMEAED 177
Score = 46 (21.3 bits), Expect = 7.5e-12, Sum P(3) = 7.5e-12
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 16 VQFGILSPDEIRRMSVTEGGIKFPETMEGG--RPKLGGLMDPR 56
++ + SPD+IR S G + PET+ +P+ GL R
Sbjct: 10 IRISLASPDQIRSWSY--GEVTKPETINYRTLKPERDGLFCER 50
>TIGR_CMR|CJE_0529 [details] [associations]
symbol:CJE_0529 "DNA-directed RNA polymerase, beta'
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:CP000025 GenomeReviews:CP000025_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
RefSeq:YP_178547.1 ProteinModelPortal:Q5HVY8 SMR:Q5HVY8
STRING:Q5HVY8 GeneID:3231290 KEGG:cjr:CJE0529 PATRIC:20042780
OMA:VIAEWDP BioCyc:CJEJ195099:GJC0-544-MONOMER Uniprot:Q5HVY8
Length = 1517
Score = 187 (70.9 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 47/132 (35%), Positives = 70/132 (53%)
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+ L G + D+ +I N L + A +I +MLQ V L DN
Sbjct: 275 VALDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRR 334
Query: 316 GLPRAMQKSGK-PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
A++ + K PLK++ +KGK+GR R NL+GKRVDFS R+VI P LR+DQ G+P+
Sbjct: 335 A--NAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPK 392
Query: 375 SIAQNMTFPEIV 386
+A + P ++
Sbjct: 393 KMALELFKPHLL 404
Score = 53 (23.7 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 65 RCQTCA---GNMTECPGHFGHIDLAKPVFHVGFV 95
+C+ C N GHI+L PV H+ +V
Sbjct: 85 KCEKCGVEVANSKVRRSRMGHIELVTPVAHIWYV 118
>TIGR_CMR|NSE_0677 [details] [associations]
symbol:NSE_0677 "DNA-directed RNA polymerase, beta'
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 TIGRFAMs:TIGR02386 OMA:VIAEWDP
RefSeq:YP_506555.1 ProteinModelPortal:Q2GD91 SMR:Q2GD91
STRING:Q2GD91 PRIDE:Q2GD91 GeneID:3931848 KEGG:nse:NSE_0677
PATRIC:22681373 BioCyc:NSEN222891:GHFU-691-MONOMER Uniprot:Q2GD91
Length = 1375
Score = 174 (66.3 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 49/137 (35%), Positives = 67/137 (48%)
Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
+ L G DL +I NN L A +I +MLQ V L DN
Sbjct: 254 VMLDGGRFATSDLNALYRSVINRNNRLKSLIYLKAPNIIINNERRMLQEAVDALFDNGRR 313
Query: 316 GLPRAMQKSGK-PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
+ ++ S K P K+I LKGK+GR R NL+GKRVD+S R+VI P L + Q G+P+
Sbjct: 314 A--KVIKGSNKRPYKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPALELHQCGLPK 371
Query: 375 SIAQNMTFPEIVTPFNM 391
IA + P I + +
Sbjct: 372 KIALELFKPFIYSKLEL 388
Score = 60 (26.2 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 66 CQTCAGNMTECP---GHFGHIDLAKPVFHVGFVTKTIKILRCV 105
C+ C +T GHI+LA PV H+ F+ K++ C+
Sbjct: 85 CERCGVEVTSSRVRRERMGHIELASPVAHIWFL-KSLPSKICI 126
>TIGR_CMR|ECH_0951 [details] [associations]
symbol:ECH_0951 "DNA-directed RNA polymerase, beta'
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_507739.1 ProteinModelPortal:Q2GFP4
STRING:Q2GFP4 PRIDE:Q2GFP4 GeneID:3927754 KEGG:ech:ECH_0951
PATRIC:20577284 BioCyc:ECHA205920:GJNR-954-MONOMER Uniprot:Q2GFP4
Length = 1410
Score = 173 (66.0 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 45/127 (35%), Positives = 63/127 (49%)
Query: 265 LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKS 324
+ DL H II NN L + +I +MLQ V L D+ S
Sbjct: 262 VSDLNHHYRTIINRNNRLGKLLKLNPPAIMIRNEKRMLQEAVDALFDSTRRSYVSNKAGS 321
Query: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPE 384
K++ LKGK+GR R NL+GKRVD+S R+VI PNL++ Q G+P+ +A + P
Sbjct: 322 VGYKKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKLHQCGLPKKMALELFKPF 381
Query: 385 IVTPFNM 391
I + M
Sbjct: 382 ICSKLKM 388
Score = 56 (24.8 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 24/97 (24%), Positives = 38/97 (39%)
Query: 6 SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPET---MEGGRPKLGGLMDPR-QGVID 61
S +R + + +S R V +GG+ P+ + G R +GV+
Sbjct: 25 SPESIRAMSYGEIKDISTTNYRTFKVEKGGLFCPKIFGPVNDDECLCGKYRKKRYRGVV- 83
Query: 62 RSSRCQTCAGNMTECP---GHFGHIDLAKPVFHVGFV 95
C+ C +T GHI+L PV HV F+
Sbjct: 84 ----CEKCGVEVTSSKVRRERMGHIELVSPVAHVWFL 116
Score = 44 (20.5 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 15 KVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKL--GGLMDPR 56
K+ I SP+ IR MS G IK T K+ GGL P+
Sbjct: 18 KICISIASPESIRAMSY--GEIKDISTTNYRTFKVEKGGLFCPK 59
>TIGR_CMR|APH_1023 [details] [associations]
symbol:APH_1023 "DNA-directed RNA polymerase, beta'
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 RefSeq:YP_505582.1 ProteinModelPortal:Q2GJ69
STRING:Q2GJ69 PRIDE:Q2GJ69 GeneID:3930013 KEGG:aph:APH_1023
PATRIC:20950796 HOGENOM:HOG000218386 OMA:DINDKHI
ProtClustDB:PRK00566 BioCyc:APHA212042:GHPM-1030-MONOMER
TIGRFAMs:TIGR02386 Uniprot:Q2GJ69
Length = 1409
Score = 172 (65.6 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 44/127 (34%), Positives = 64/127 (50%)
Query: 265 LDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKS 324
+ DL H II NN L + +I +MLQ V L D+ + S
Sbjct: 262 VSDLNHHYRTIINRNNRLEKLLKLNPPAIMIRNEKRMLQEAVDALFDSSRRSYVSSRVGS 321
Query: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPE 384
K++ LKGK+GR R NL+GKRVD+S R+VI P+L++ Q G+P+ +A + P
Sbjct: 322 MGYKKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKLHQCGLPKKMALELFKPF 381
Query: 385 IVTPFNM 391
I + M
Sbjct: 382 ICSKLKM 388
Score = 54 (24.1 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 66 CQTCAGNMTECP---GHFGHIDLAKPVFHVGFV 95
C+ C +T GHI+L PV H+ F+
Sbjct: 84 CEKCGVEVTSSKVRRERMGHIELVSPVAHIWFL 116
Score = 44 (20.5 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 15 KVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKL--GGLMDPR 56
K+ I SP+ IR MS G IK T K+ GGL P+
Sbjct: 18 KICISIASPESIRAMSY--GEIKDISTTNYRTFKVEKGGLFCPK 59
>UNIPROTKB|P0C504 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 EMBL:AY522331 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 HAMAP:MF_01323 ProteinModelPortal:P0C504
Gramene:P0C504 HOGENOM:HOG000054284 Genevestigator:P0C504
Uniprot:P0C504
Length = 682
Score = 162 (62.1 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 42/121 (34%), Positives = 63/121 (52%)
Query: 259 TGKGVLLDDLTHKLADIIKCNNEL--IRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
+G V+ D+ +I+ NN L + S A ++ K++Q V TL D+ G
Sbjct: 283 SGDKVVTSDINELYKRVIRRNNNLAYLLKRSELAPADLVMCQEKLVQEAVDTLLDSGSRG 342
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P K K++ ++GKEGR R L+GKRVD+S R+VI P+L + Q G+P I
Sbjct: 343 QP-TRDGHNKVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEI 401
Query: 377 A 377
A
Sbjct: 402 A 402
Score = 41 (19.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 66 CQTCAGNMTECP---GHFGHIDLAKPVFHVGFV 95
CQ C + G+I LA PV HV ++
Sbjct: 87 CQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYL 119
>UNIPROTKB|P0C505 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 EMBL:AY522329 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 ProtClustDB:CHL00018
HAMAP:MF_01323 RefSeq:YP_654207.2 ProteinModelPortal:P0C505
GeneID:4126923 Gramene:P0C505 Uniprot:P0C505
Length = 682
Score = 162 (62.1 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 42/121 (34%), Positives = 63/121 (52%)
Query: 259 TGKGVLLDDLTHKLADIIKCNNEL--IRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
+G V+ D+ +I+ NN L + S A ++ K++Q V TL D+ G
Sbjct: 283 SGDKVVTSDINELYKRVIRRNNNLAYLLKRSELAPADLVMCQEKLVQEAVDTLLDSGSRG 342
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P K K++ ++GKEGR R L+GKRVD+S R+VI P+L + Q G+P I
Sbjct: 343 QP-TRDGHNKVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEI 401
Query: 377 A 377
A
Sbjct: 402 A 402
Score = 41 (19.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 66 CQTCAGNMTECP---GHFGHIDLAKPVFHVGFV 95
CQ C + G+I LA PV HV ++
Sbjct: 87 CQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYL 119
>UNIPROTKB|P0C506 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 EMBL:X15901 EMBL:AY522330
GenomeReviews:AY522330_GR Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 eggNOG:COG0086 ProtClustDB:CHL00018 HAMAP:MF_01323
PIR:JQ0214 RefSeq:NP_039374.1 ProteinModelPortal:P0C506
STRING:P0C506 EnsemblPlants:LOC_Osp1g00250.1 GeneID:3131433
KEGG:osa:3131433 Gramene:P0C506 KO:K03046 OMA:VIDNFIA
Uniprot:P0C506
Length = 682
Score = 162 (62.1 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 42/121 (34%), Positives = 63/121 (52%)
Query: 259 TGKGVLLDDLTHKLADIIKCNNEL--IRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
+G V+ D+ +I+ NN L + S A ++ K++Q V TL D+ G
Sbjct: 283 SGDKVVTSDINELYKRVIRRNNNLAYLLKRSELAPADLVMCQEKLVQEAVDTLLDSGSRG 342
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P K K++ ++GKEGR R L+GKRVD+S R+VI P+L + Q G+P I
Sbjct: 343 QP-TRDGHNKVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEI 401
Query: 377 A 377
A
Sbjct: 402 A 402
Score = 41 (19.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 66 CQTCAGNMTECP---GHFGHIDLAKPVFHVGFV 95
CQ C + G+I LA PV HV ++
Sbjct: 87 CQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYL 119
>UNIPROTKB|Q6ENI3 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AP006728
GO:GO:0003899 RefSeq:YP_052740.1 ProteinModelPortal:Q6ENI3
GeneID:2885900 Gramene:Q6ENI3 ProtClustDB:CHL00018 HAMAP:MF_01323
Uniprot:Q6ENI3
Length = 682
Score = 162 (62.1 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 42/121 (34%), Positives = 63/121 (52%)
Query: 259 TGKGVLLDDLTHKLADIIKCNNEL--IRNESSGAATHVIAENIKMLQFHVATLTDNDMPG 316
+G V+ D+ +I+ NN L + S A ++ K++Q V TL D+ G
Sbjct: 283 SGDKVVTSDINELYKRVIRRNNNLAYLLKRSELAPADLVMCQEKLVQEAVDTLLDSGSRG 342
Query: 317 LPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSI 376
P K K++ ++GKEGR R L+GKRVD+S R+VI P+L + Q G+P I
Sbjct: 343 QP-TRDGHNKVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEI 401
Query: 377 A 377
A
Sbjct: 402 A 402
Score = 41 (19.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 66 CQTCAGNMTECP---GHFGHIDLAKPVFHVGFV 95
CQ C + G+I LA PV HV ++
Sbjct: 87 CQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYL 119
>TAIR|locus:2061151 [details] [associations]
symbol:NRPD1B "nuclear RNA polymerase D1B" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=ISS]
[GO:0000418 "DNA-directed RNA polymerase IV complex" evidence=IPI]
[GO:0006306 "DNA methylation" evidence=RCA;IMP] [GO:0000419
"DNA-directed RNA polymerase V complex" evidence=IDA;IPI]
[GO:0030880 "RNA polymerase complex" evidence=IPI] [GO:0035194
"posttranscriptional gene silencing by RNA" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0016604 "nuclear body" evidence=IDA] [GO:0030422
"production of siRNA involved in RNA interference"
evidence=IGI;IMP] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016568 "chromatin modification" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051567 "histone H3-K9 methylation" evidence=RCA] [GO:0051726
"regulation of cell cycle" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR015801 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 SMART:SM00663 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0005507 GO:GO:0048038 GO:GO:0009308
Gene3D:3.10.450.40 GO:GO:0030422 GO:GO:0006306 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0016604 EMBL:AF002109 GO:GO:0003899
eggNOG:COG0086 GO:GO:0000418 InterPro:IPR021602 Pfam:PF11523
EMBL:AY826516 EMBL:AY927744 EMBL:DQ020656 IPI:IPI00537496
PIR:D84824 PIR:E84824 RefSeq:NP_181532.2 UniGene:At.37106
ProteinModelPortal:Q5D869 SMR:Q5D869 DIP:DIP-48678N IntAct:Q5D869
STRING:Q5D869 PaxDb:Q5D869 PRIDE:Q5D869 EnsemblPlants:AT2G40030.1
GeneID:818591 KEGG:ath:AT2G40030 TAIR:At2g40030
HOGENOM:HOG000082864 InParanoid:Q5D869 KO:K16251 OMA:QSDSWDG
PhylomeDB:Q5D869 ProtClustDB:CLSN2681712 Genevestigator:Q5D869
GO:GO:0000419 Uniprot:Q5D869
Length = 1976
Score = 106 (42.4 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 28/98 (28%), Positives = 46/98 (46%)
Query: 16 VQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTC-AGNMT 74
+ F + S EI S++E I P + GL P + +C++C A
Sbjct: 17 ITFALASHHEICIQSISESAINHPSQLTNA---FLGL--PLE-----FGKCESCGATEPD 66
Query: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKL 112
+C GHFG+I L P++H V + ++L +C C K+
Sbjct: 67 KCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKI 104
Score = 88 (36.0 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 341 RIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFN 390
++R + K FS+R+VIT D +++VG+P IAQ +TF E V+ N
Sbjct: 310 KMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVHN 359
>TAIR|locus:2015163 [details] [associations]
symbol:NRPD1A "nuclear RNA polymerase D1A" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA;IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IGI;IMP] [GO:0031047 "gene silencing by RNA"
evidence=RCA;IMP] [GO:0000418 "DNA-directed RNA polymerase IV
complex" evidence=IDA;IPI] [GO:0007267 "cell-cell signaling"
evidence=RCA;IMP] [GO:0016246 "RNA interference" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0010495
"long-distance posttranscriptional gene silencing" evidence=IMP]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0035196 "production of miRNAs involved
in gene silencing by miRNA" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015801
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC011000
GO:GO:0003677 GO:GO:0007267 GO:GO:0006351 GO:GO:0005507
GO:GO:0048038 GO:GO:0009308 Gene3D:3.10.450.40 GO:GO:0030422
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0006346
EMBL:AC010795 EMBL:AY826515 EMBL:DQ020657 IPI:IPI00523111
PIR:D96655 RefSeq:NP_001185298.1 RefSeq:NP_176490.2
UniGene:At.36192 ProteinModelPortal:Q9LQ02 SMR:Q9LQ02
DIP:DIP-48679N STRING:Q9LQ02 PaxDb:Q9LQ02 PRIDE:Q9LQ02
EnsemblPlants:AT1G63020.1 EnsemblPlants:AT1G63020.2 GeneID:842605
KEGG:ath:AT1G63020 TAIR:At1g63020 eggNOG:COG0086
HOGENOM:HOG000083760 InParanoid:Q9LQ02 KO:K16250 OMA:HQHSLIA
PhylomeDB:Q9LQ02 ProtClustDB:CLSN2680546 Genevestigator:Q9LQ02
GO:GO:0000418 GO:GO:0010495 InterPro:IPR021602 Pfam:PF11523
Uniprot:Q9LQ02
Length = 1453
Score = 102 (41.0 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 346 LMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
L+GKR D + RTV+ DP+L+++++G+P SIA+ + E + N +
Sbjct: 313 LLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKE 359
Score = 83 (34.3 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 26/104 (25%), Positives = 48/104 (46%)
Query: 7 KAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVIDRSSRC 66
+ P+ + + F I + ++ +MSV E ++ P + D R G+ + S C
Sbjct: 9 QVPVGTLTSIGFSISNNNDRDKMSVLE--VEAPNQVT----------DSRLGLPNPDSVC 56
Query: 67 QTCAGNMTE-CPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYC 109
+TC + C GHFG I+ A + + F+ + +L +C C
Sbjct: 57 RTCGSKDRKVCEGHFGVINFAYSIINPYFLKEVAALLNKICPGC 100
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.137 0.415 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 392 392 0.00095 117 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 78
No. of states in DFA: 611 (65 KB)
Total size of DFA: 247 KB (2131 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.29u 0.09s 33.38t Elapsed: 00:00:20
Total cpu time: 33.31u 0.10s 33.41t Elapsed: 00:00:21
Start: Thu Aug 15 13:28:58 2013 End: Thu Aug 15 13:29:19 2013