RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3023
         (392 letters)



>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 1449

 Score =  337 bits (865), Expect = e-105
 Identities = 187/409 (45%), Positives = 240/409 (58%), Gaps = 51/409 (12%)

Query: 6   SKAPLRCVKKVQFGILSPDEIRRMSVTEGGIKFPETME--GGRPKLGGLMDPRQGVIDRS 63
           S APLR VK+VQFG+ SP+E+R +SV +  I+FPETM+    R K+GGL DPR G IDR+
Sbjct: 6   SSAPLRTVKEVQFGLFSPEEVRAISVAK--IRFPETMDETQTRAKIGGLNDPRLGSIDRN 63

Query: 64  SRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKVRD 123
            +CQTC   M ECPGHFGHIDLAKPVFHVGF+ K  K+  CVC +C KLL+   +  +R 
Sbjct: 64  LKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQ 123

Query: 124 VVLKTKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDPNSLQNKKQGHGGCGRYQP 183
            +      S++R A I+ LCK K +CE   ++    D          +    GGCG  QP
Sbjct: 124 ALAIKD--SKKRFAAIWTLCKTKMVCE--TDVPSEDDP--------TQLVSRGGCGNTQP 171

Query: 184 NIRRSGLDLTAEWKH---VNEDSQEKKIPLTGKGVLLNKKQGHGGCGRYQPNIRRSGLDL 240
            IR+ GL L   WK      +  + +   L+ + +L               NI +     
Sbjct: 172 TIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEIL---------------NIFKHISVK 216

Query: 241 TAEWKHVNEDSQEKK-----------------IPLTGKGVLLDDLTHKLADIIKCNNELI 283
                  NE     +                 I         DDLT KLADI+K N  L 
Sbjct: 217 DFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLE 276

Query: 284 RNESSGAATHVIAENIKMLQFHVATLTDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIR 343
             E +GA  H I E   +LQFHVAT  DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIR
Sbjct: 277 TLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIR 336

Query: 344 GNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 392
           GNLMGKRVDFSARTVI+ DPNL +DQVGVP+SIA+ +T+PE+VTP+N+D
Sbjct: 337 GNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNID 385


>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
           thermophilus [TaxId: 274]}
          Length = 1504

 Score =  173 bits (440), Expect = 3e-48
 Identities = 46/135 (34%), Positives = 69/135 (51%)

Query: 256 IPLTGKGVLLDDLTHKLADIIKCNNELIRNESSGAATHVIAENIKMLQFHVATLTDNDMP 315
           + + G      DL      +I  NN L +  + GA   +I    +MLQ  V  L DN   
Sbjct: 527 VQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDALLDNGRR 586

Query: 316 GLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 375
           G P     S +PL+++   L GK+GR R NL+GKRVD+S R+VI   P L++ Q G+P+ 
Sbjct: 587 GAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKR 646

Query: 376 IAQNMTFPEIVTPFN 390
           +A  +  P ++    
Sbjct: 647 MALELFKPFLLKKME 661



 Score = 39.0 bits (90), Expect = 0.001
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 32/107 (29%)

Query: 14  KKVQFGILSPDEIRRMSVTEGGIKFPETM--EGGRPKLGGLMDPR--------------- 56
           +KV+  + SP++IR  S  E  ++ PET+     +P+  GL D R               
Sbjct: 5   RKVRIALASPEKIRSWSYGE--VEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKY 62

Query: 57  -----QGVIDRSSRCQTCAGNMTECP---GHFGHIDLAKPVFHVGFV 95
                +G +     C+ C   +T+        GHI+LA P  H+ FV
Sbjct: 63  KRQRFEGKV-----CERCGVEVTKSIVRRYRMGHIELATPAAHIWFV 104


>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus
           aculeatus) [TaxId: 5053]}
          Length = 339

 Score = 27.3 bits (60), Expect = 3.4
 Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 2/65 (3%)

Query: 107 FYCSKLLVSPSHPKVRDVVLK-TKGQSRRRQAFIYDLCKGKNICEGGDEMDINKDGAEDP 165
            Y        +   + D VL    G        I   C   + C      D++  G +  
Sbjct: 269 NYGDTSSTPTTGVPITDFVLDNVHGSVVSSGTNILISCGSGS-CSDWTWTDVSVSGGKTS 327

Query: 166 NSLQN 170
           +   N
Sbjct: 328 SKCTN 332


>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus
           [TaxId: 1427]}
          Length = 81

 Score = 25.4 bits (55), Expect = 4.1
 Identities = 5/55 (9%), Positives = 17/55 (30%), Gaps = 1/55 (1%)

Query: 55  PRQGVIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYC 109
           P+  ++D+   C  C       P  + + +       +      +++   +    
Sbjct: 1   PKYTIVDKE-TCIACGACGAAAPDIYDYDEDGIAYVTLDDNQGIVEVPDILIDDM 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0477    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,499,913
Number of extensions: 71711
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 8
Length of query: 392
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 305
Effective length of database: 1,213,086
Effective search space: 369991230
Effective search space used: 369991230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)