RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3027
         (300 letters)



>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus
           subtilis [TaxId: 1423]}
          Length = 63

 Score = 28.6 bits (64), Expect = 0.15
 Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 4/30 (13%)

Query: 142 AIWYFSFIPASNKYTYYILSF----FLHTI 167
            +W  +++    +Y+   + F     L  I
Sbjct: 32  LLWEVTYLDKEGQYSLSYVDFTTGKILKNI 61


>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion
           domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 121

 Score = 27.6 bits (61), Expect = 0.85
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 184 MLMAIYKKIDKASDTLEYFAHRQWVWTDHNVQALFNK---LDPEDQELFFFD 232
            LM +   I++ +   E     Q +W D  +QA F++       D   ++  
Sbjct: 46  KLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLS 97


>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion
           domain {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 121

 Score = 24.9 bits (54), Expect = 6.8
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 184 MLMAIYKKIDKASDTLEYFAHRQWVWTDHNVQALFNK 220
            L  +    ++   T E     + +W D  VQA FN+
Sbjct: 46  QLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNR 82


>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 237

 Score = 25.4 bits (54), Expect = 7.7
 Identities = 11/114 (9%), Positives = 26/114 (22%)

Query: 29  LAVLRPAVIVSTYREPVRGWIDNVYGPIGMLVGIATGVLHTHLINLNTVTDMVPSTVSDG 88
           +   R  +  +    P+ G I       G LV          +  L+ +   V    +  
Sbjct: 100 VEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQLDPIYVDVTQPSTAL 159

Query: 89  PSEGVWQKKFPTSVFRPDPIPIYNFVGSARNPISWGKLDELATVCHPIWPTIRA 142
                            +   +   +         G+L+           ++  
Sbjct: 160 LRLRRELASGQLERAGDNAAKVSLKLEDGSQYPLEGRLEFSEVSVDEGTGSVTI 213


>d3erja1 c.131.1.1 (A:2-117) Hypothetical protein AF2095
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 116

 Score = 24.7 bits (54), Expect = 8.1
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 10/54 (18%)

Query: 207 WVWTDHNVQALFNKLDPEDQELFFFDMGQMKWEYYAEAMGLGLRVYLVHDDIHT 260
             W D   + +  K+   ++ L              +A  LGL   LV D   T
Sbjct: 40  RKWLDEGQKKVVLKVKSLEELL----------GIKHKAESLGLVTGLVQDAGLT 83


>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus
           (Penicillium simplicissimum) [TaxId: 69488]}
          Length = 287

 Score = 25.6 bits (55), Expect = 8.1
 Identities = 11/72 (15%), Positives = 18/72 (25%), Gaps = 4/72 (5%)

Query: 184 MLMAIYKKIDKASDTLEYFAHRQWVWTDHNVQALFNKLDPEDQELFFFDMGQMKWEYYAE 243
                 K+  +A                H V  +FNK D   +      +  +      +
Sbjct: 166 QYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKR----KVQWLMRTLIDD 221

Query: 244 AMGLGLRVYLVH 255
               G   Y  H
Sbjct: 222 CAANGWGEYRTH 233


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.142    0.462 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,226,577
Number of extensions: 58411
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 6
Length of query: 300
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,240,546
Effective search space: 266717390
Effective search space used: 266717390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.3 bits)