BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3029
(617 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 110/152 (72%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS+V+RY F+ T+GASF T K+N+G +V L +WDTAGQERF ++ P+YY
Sbjct: 17 VGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYY 76
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R++N A+LV+DIT SF +K WVKEL++ + + LC+VGNK DLE R V+ +EA
Sbjct: 77 RDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAES 136
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
Y++S+G +Y TSA Q++GIE++FL++ K +I
Sbjct: 137 YAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS+V+RY F+ T+GASF T K+N+G +V L +
Sbjct: 17 VGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAI 59
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 109/152 (71%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS+V+RY F+ T+ ASF T K+N+G +V L +WDTAGQERF ++ P+YY
Sbjct: 17 VGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYY 76
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R++N A+LV+DIT SF +K WVKEL++ + + LC+VGNK DLE R V+ +EA
Sbjct: 77 RDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAES 136
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
Y++S+G +Y TSA Q++GIE++FL++ K +I
Sbjct: 137 YAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS+V+RY F+ T+ ASF T K+N+G +V L +
Sbjct: 17 VGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAI 59
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 109/152 (71%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS+V+RY F+ T+ ASF T K+N+G +V L +WDTAGQERF ++ P+YY
Sbjct: 31 VGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYY 90
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R++N A+LV+DIT SF +K WVKEL++ + + LC+VGNK DLE R V+ +EA
Sbjct: 91 RDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAES 150
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
Y++S+G +Y TSA Q++GIE++FL++ K +I
Sbjct: 151 YAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 182
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS+V+RY F+ T+ ASF T K+N+G +V L +
Sbjct: 31 VGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAI 73
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 155 bits (391), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 101/150 (67%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S+V R++ F H+ISPTIGASF T + G K +WDTAGQERF S+APMY
Sbjct: 33 GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMY 92
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR + AA++V+DIT+ SF +K WVKELK + E +V+ + GNK DL REV ++A
Sbjct: 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAK 152
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
Y++SIG ETSA IE++F +S+
Sbjct: 153 EYAESIGAIVVETSAKNAINIEELFQGISR 182
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG 375
GVGK+S+V R++ F H+ISPTIGASF T + G
Sbjct: 33 GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCG 68
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 145 bits (365), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 97/152 (63%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F + TIGA+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 18 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMY 77
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT +FA KTWVKEL+R +V+ + GNK DL + R V EEA
Sbjct: 78 YRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQ 137
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + D+FL ++K L
Sbjct: 138 AYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F + TIGA+F T + + + VK ++
Sbjct: 18 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 142 bits (358), Expect = 6e-34, Method: Composition-based stats.
Identities = 66/153 (43%), Positives = 100/153 (65%), Gaps = 3/153 (1%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F+ + PTIGA+F T ++ + E+ VK ++WDTAGQERF S+AP Y
Sbjct: 13 AVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXY 72
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDL---ESSREVNRE 232
YRNA AAL+V+D+T+ SF + WVKEL + +++ +VGNK D R+V RE
Sbjct: 73 YRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVARE 132
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
E ++ G ++ETSA + + DVFL + +
Sbjct: 133 EGEKLAEEKGLLFFETSAKTGENVNDVFLGIGE 165
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F+ + PTIGA+F T ++ + E+ VK ++
Sbjct: 13 AVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEI 56
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 99/150 (66%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S+V R++ F +I+PTIGASF T + K +WDTAGQERFR++APMY
Sbjct: 15 GVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMY 74
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR + AA++V+DIT+ +F+ +K WV+EL+++ +V+ + GNK DL REV +A
Sbjct: 75 YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAK 134
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
Y+ SI + ETSA I ++F+ +S+
Sbjct: 135 DYADSIHAIFVETSAKNAININELFIEISR 164
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKI 372
GVGK+S+V R++ F +I+PTIGASF T +
Sbjct: 15 GVGKSSIVWRFVEDSFDPNINPTIGASFMTKTV 47
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 96/152 (63%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F + TIGA+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 13 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 72
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT +FA K WVKEL+R +V+ + GNK DL S R V +EA
Sbjct: 73 YRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQ 132
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 133 AYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F + TIGA+F T + + + VK ++
Sbjct: 13 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEI 56
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 96/152 (63%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F TIGA+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 17 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 76
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT SFA K WVKEL+R +V+ + GNK DL + R V+ +EA
Sbjct: 77 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQ 136
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 137 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F TIGA+F T + + + VK ++
Sbjct: 17 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 60
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 96/152 (63%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F TIGA+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 16 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 75
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT SFA K WVKEL+R +V+ + GNK DL + R V+ +EA
Sbjct: 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQ 135
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F TIGA+F T + + + VK ++
Sbjct: 16 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 59
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 96/151 (63%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGK+S+V+R++ F TIGA+F T + + + VK ++WDTAGQER+ S+APMYY
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R A AA++V+DIT SFA K WVKEL+R +V+ + GNK DL + R V+ +EA
Sbjct: 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 136
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 137 YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F TIGA+F T + + + VK ++
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 59
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 96/151 (63%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGK+S+V+R++ F TIGA+F T + + + VK ++WDTAGQER+ S+APMYY
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R A AA++V+DIT SFA K WVKEL+R +V+ + GNK DL + R V+ +EA
Sbjct: 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 136
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 137 YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F TIGA+F T + + + VK ++
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 59
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 96/151 (63%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGK+S+V+R++ F TIGA+F T + + + VK ++WDTAGQER+ S+APMYY
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R A AA++V+DIT SFA K WVKEL+R +V+ + GNK DL + R V+ +EA
Sbjct: 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 136
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 137 YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F TIGA+F T + + + VK ++
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 59
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 96/151 (63%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGK+S+V+R++ F TIGA+F T + + + VK ++WDTAGQER+ S+APMYY
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R A AA++V+DIT SFA K WVKEL+R +V+ + GNK DL + R V+ +EA
Sbjct: 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 136
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 137 YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F TIGA+F T + + + VK ++
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 59
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 96/151 (63%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGK+S+V+R++ F TIGA+F T + + + VK ++WDTAGQER+ S+APMYY
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R A AA++V+DIT SFA K WVKEL+R +V+ + GNK DL + R V+ +EA
Sbjct: 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 136
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 137 YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F TIGA+F T + + + VK ++
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 59
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 95/152 (62%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F + TI A+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 15 AVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 74
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT +FA K WVKEL+R +V+ + GNK DL S R V +EA
Sbjct: 75 YRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQ 134
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 135 AYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F + TI A+F T + + + VK ++
Sbjct: 15 AVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEI 58
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 95/152 (62%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F + TIGA+F T + + + VK ++WDTAG ER+ S+APMY
Sbjct: 15 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMY 74
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT +FA K WVKEL+R +V+ + GNK DL S R V +EA
Sbjct: 75 YRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQ 134
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 135 AYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F + TIGA+F T + + + VK ++
Sbjct: 15 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEI 58
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 98/150 (65%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S++ R++ F +I+PTIGASF T + K +WDTAG ERFR++APMY
Sbjct: 16 GVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMY 75
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR + AA++V+DIT+ +F+ +K WV+EL+++ +V+ + GNK DL REV +A
Sbjct: 76 YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAK 135
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
Y+ SI + ETSA I ++F+ +S+
Sbjct: 136 DYADSIHAIFVETSAKNAININELFIEISR 165
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKI 372
GVGK+S++ R++ F +I+PTIGASF T +
Sbjct: 16 GVGKSSIMWRFVEDSFDPNINPTIGASFMTKTV 48
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 95/152 (62%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F TIGA+F T + + + VK ++WDTAG ER+ S+APMY
Sbjct: 15 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMY 74
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT SFA K WVKEL+R +V+ + GNK DL + R V+ +EA
Sbjct: 75 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQ 134
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 135 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F TIGA+F T + + + VK ++
Sbjct: 15 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 58
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 136 bits (342), Expect = 4e-32, Method: Composition-based stats.
Identities = 63/153 (41%), Positives = 100/153 (65%)
Query: 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
+G GK+S+V+R++ F TIGA+FF+ + V + VK ++WDTAGQER+ S+APM
Sbjct: 21 VGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM 80
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEA 234
YYR A AA++VFD+T SF K WV+EL+ + +V+ + GNK+DL +R+V E+A
Sbjct: 81 YYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDA 140
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y++ G + ETSA ++++F +++ L
Sbjct: 141 QTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 339 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
+G GK+S+V+R++ F TIGA+FF+ + V + VK ++
Sbjct: 21 VGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEI 65
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 94/152 (61%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F TIGA+F T + + + VK ++WDTAGQER+ S+AP Y
Sbjct: 17 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPXY 76
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT SFA K WVKEL+R +V+ + GNK DL + R V+ +EA
Sbjct: 77 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQ 136
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F ++K L
Sbjct: 137 SYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F TIGA+F T + + + VK ++
Sbjct: 17 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 60
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 97/154 (62%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKT+++ R+ FSH TIG F T + +G VK Q+WDTAG ER+R++ Y
Sbjct: 20 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAY 79
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLVFD+T++ ++A ++ W+KEL + + +V+ +VGNK+DL +REV EEA
Sbjct: 80 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEAR 139
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269
++++ G + ETSAL +E F V K +
Sbjct: 140 MFAENNGLLFLETSALDSTNVELAFETVLKEIFA 173
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKT+++ R+ FSH TIG F T + +G VK Q+
Sbjct: 20 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 63
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 97/154 (62%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKT+++ R+ FSH TIG F T + +G VK Q+WDTAG ER+R++ Y
Sbjct: 35 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAY 94
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLVFD+T++ ++A ++ W+KEL + + +V+ +VGNK+DL +REV EEA
Sbjct: 95 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEAR 154
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269
++++ G + ETSAL +E F V K +
Sbjct: 155 MFAENNGLLFLETSALDSTNVELAFETVLKEIFA 188
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKT+++ R+ FSH TIG F T + +G VK Q+
Sbjct: 35 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 78
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 94/153 (61%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKT +V R+ +F TIG F + + KVKLQ+WDTAGQERFRS+ Y
Sbjct: 36 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSY 95
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR+ANA +L +DIT SF + W++E+++ ++ +VGNK DL REV+++ A
Sbjct: 96 YRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAE 155
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
+S++ Y ETSA + +E +FL+++ LI
Sbjct: 156 EFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 188
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKT +V R+ +F TIG F + + KVKLQ+
Sbjct: 36 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 79
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 100/160 (62%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ +++++ K F TIG F +N+ ++KLQ+WDTAGQE FRS+ Y
Sbjct: 31 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY 90
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLV+DIT+ +F + +W+++ +++ +V+ ++GNK+DLES R+V REE
Sbjct: 91 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGE 150
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQESL 275
+++ G + ETSA +E+ F+N +K + Q+ L
Sbjct: 151 AFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL 190
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ +++++ K F TIG F +N+ ++KLQ+
Sbjct: 31 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQI 74
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 96/150 (64%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ +++++ K F TIG F I + ++KLQ+WDTAGQE FRS+ Y
Sbjct: 20 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSY 79
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLV+DIT+ +F + TW+++ +++ + +V+ ++GNK+DLES REV +EE
Sbjct: 80 YRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGE 139
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
+++ G + ETSA +E+ F+N +K
Sbjct: 140 AFAREHGLIFMETSAKTASNVEEAFINTAK 169
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTGLKVSKIPVPTRNR 399
GVGK+ +++++ K F TIG F I + ++KLQ+ TR+
Sbjct: 20 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSY 79
Query: 400 EGATTGR-----ITEPDTMNN 415
G IT DT N+
Sbjct: 80 YRGAAGALLVYDITRRDTFNH 100
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 125 bits (315), Expect = 5e-29, Method: Composition-based stats.
Identities = 64/146 (43%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKV-KLQVWDTAGQERFRSMAPM 174
GVGK++++ R+ F+ TIG F T I + NK+ K Q+WDTAGQER+R++
Sbjct: 17 GVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAITSA 76
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEA 234
YYR A ALLV+DIT+ +SF I+ W+KEL+ N D +V+ +VGNK+DL+ R +N +A
Sbjct: 77 YYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHLRVINDNDA 136
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVF 260
Y+K + ETSAL+ +E F
Sbjct: 137 TQYAKKEKLAFIETSALEATNVELAF 162
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKV 379
GVGK++++ R+ F+ TIG F T I + NK+
Sbjct: 17 GVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKI 56
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 94/153 (61%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GK+ ++ ++I K F + TIG F + INVG VKLQ+WDTAGQERFRS+ Y
Sbjct: 20 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSY 79
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLV+DIT ++ A+ W+ + + + +V+ + GNK DL++ REV EA
Sbjct: 80 YRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEAS 139
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
+++ + ETSAL + +E+ F+ ++ ++
Sbjct: 140 RFAQENELMFLETSALTGENVEEAFVQCARKIL 172
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
G GK+ ++ ++I K F + TIG F + INVG VKLQ+
Sbjct: 20 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 63
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 94/153 (61%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GK+ ++ ++I K F + TIG F + INVG VKLQ+WDTAGQERFRS+ Y
Sbjct: 21 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSY 80
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLV+DIT ++ A+ W+ + + + +V+ + GNK DL++ REV EA
Sbjct: 81 YRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEAS 140
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
+++ + ETSAL + +E+ F+ ++ ++
Sbjct: 141 RFAQENELMFLETSALTGEDVEEAFVQCARKIL 173
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
G GK+ ++ ++I K F + TIG F + INVG VKLQ+
Sbjct: 21 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 64
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 94/152 (61%), Gaps = 2/152 (1%)
Query: 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
+GVGK+ ++ ++ K F TIG F T I V K+KLQ+WDTAGQERFR++
Sbjct: 24 MGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRS 83
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEP-LVLCVVGNKTDLESSREVNREE 233
YYR A AL+V+DIT+ ++ + +W+ + RN+ P V+ ++GNK DLE+ R+V EE
Sbjct: 84 YYRGAAGALMVYDITRRSTYNHLSSWLTD-ARNLTNPNTVIILIGNKADLEAQRDVTYEE 142
Query: 234 AFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
A +++ G + E SA + +ED FL +K
Sbjct: 143 AKQFAEENGLLFLEASAKTGENVEDAFLEAAK 174
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 339 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
+GVGK+ ++ ++ K F TIG F T I V K+KLQ+
Sbjct: 24 MGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI 68
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 91/148 (61%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK++++ R+ F+ TIG F T I V +K Q+WDTAGQER+R + Y
Sbjct: 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAY 74
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLV+DI ++ ++ ++ W+KEL+ + D +V+ +VGNK+DL R V +EA
Sbjct: 75 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEAR 134
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNV 263
+++ ++ ETSAL +E+ F N+
Sbjct: 135 AFAEKNNLSFIETSALDSTNVEEAFKNI 162
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK++++ R+ F+ TIG F T I V +K Q+
Sbjct: 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 58
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 91/148 (61%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK++++ R+ F+ TIG F T I V +K Q+WDTAGQER+R++ Y
Sbjct: 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 98
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLV+DI ++ ++ ++ W+KEL+ + D +V+ +VGNK+DL R V +EA
Sbjct: 99 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEAR 158
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNV 263
+++ G ++ ETSAL +E F +
Sbjct: 159 AFAEKNGLSFIETSALDSTNVEAAFQTI 186
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK++++ R+ F+ TIG F T I V +K Q+
Sbjct: 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 91/148 (61%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK++++ R+ F+ TIG F T I V +K Q+WDTAGQER+R++ Y
Sbjct: 30 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 89
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLV+DI ++ ++ ++ W+KEL+ + D +V+ +VGNK+DL R V +EA
Sbjct: 90 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEAR 149
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNV 263
+++ G ++ ETSAL +E F +
Sbjct: 150 AFAEKNGLSFIETSALDSTNVEAAFQTI 177
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK++++ R+ F+ TIG F T I V +K Q+
Sbjct: 30 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 73
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 103/174 (59%), Gaps = 1/174 (0%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ +++R+ +++ TIG F + + VKLQ+WDTAGQERFR++ Y
Sbjct: 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 77
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR ++ ++V+D+T SF +K W++E+ R ++ +VGNK DL+ R V + A
Sbjct: 78 YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAK 137
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI-CLSQESLHTSSLRVYDSDNI 288
++ + + ETSAL +ED FL +++ + +SQ++L+ ++ + D N+
Sbjct: 138 EFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNV 191
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ +++R+ +++ TIG F + + VKLQ+
Sbjct: 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 103/174 (59%), Gaps = 1/174 (0%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ +++R+ +++ TIG F + + VKLQ+WDTAGQERFR++ Y
Sbjct: 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 77
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR ++ ++V+D+T SF +K W++E+ R ++ +VGNK DL+ R V + A
Sbjct: 78 YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAK 137
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI-CLSQESLHTSSLRVYDSDNI 288
++ + + ETSAL +ED FL +++ + +SQ++L+ ++ + D N+
Sbjct: 138 EFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNV 191
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ +++R+ +++ TIG F + + VKLQ+
Sbjct: 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 97/163 (59%), Gaps = 5/163 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ ++VR++ F+ TIG F +++ KVKLQ+WDTAGQERFR++ Y
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY 72
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A +LV+DIT +F IK W K + + ++ L +VGNK+D+E +R V ++
Sbjct: 73 YRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGE 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQESLHTS 278
+K +G + E+SA D + ++F ++K L QE + ++
Sbjct: 132 ALAKELGIPFIESSAKNDDNVNEIFFTLAK----LIQEKIDSN 170
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ ++VR++ F+ TIG F +++ KVKLQ+
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQI 56
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 98/165 (59%), Gaps = 5/165 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ ++VR++ F+ TIG F +++ KVKLQ+WDTAGQERFR++ Y
Sbjct: 30 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 89
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A +LV+D+T +F IK W K + + ++ L +VGNK+D+E +R V ++
Sbjct: 90 YRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGE 148
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQESLHTSSL 280
+K +G + E+SA D + ++F ++K L QE + ++ L
Sbjct: 149 ALAKELGIPFIESSAKNDDNVNEIFFTLAK----LIQEKIDSNKL 189
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ ++VR++ F+ TIG F +++ KVKLQL
Sbjct: 30 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQL 73
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 93/152 (61%), Gaps = 2/152 (1%)
Query: 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
+GVGK+ ++ ++ K F TIG F T I V K+KLQ+WDTAGQ RFR++
Sbjct: 39 MGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRS 98
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEP-LVLCVVGNKTDLESSREVNREE 233
YYR A AL+V+DIT+ ++ + +W+ + RN+ P V+ ++GNK DLE+ R+V EE
Sbjct: 99 YYRGAAGALMVYDITRRSTYNHLSSWLTD-ARNLTNPNTVIILIGNKADLEAQRDVTYEE 157
Query: 234 AFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
A +++ G + E SA + +ED FL +K
Sbjct: 158 AKQFAEENGLLFLEASAKTGENVEDAFLEAAK 189
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 339 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
+GVGK+ ++ ++ K F TIG F T I V K+KLQ+
Sbjct: 39 MGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI 83
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 93/153 (60%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GK+ ++ ++I K F + TIG F + INVG VKLQ+WDTAG ERFRS+ Y
Sbjct: 18 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVTRSY 77
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLV+DIT ++ A+ W+ + + + +V+ + GNK DL++ REV EA
Sbjct: 78 YRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEAS 137
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
+++ + ETSAL + +E+ F+ ++ ++
Sbjct: 138 RFAQENELMFLETSALTGEDVEEAFVQCARKIL 170
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTGLKVSKIPVPTRNR 399
G GK+ ++ ++I K F + TIG F + INVG VKLQ+ + + TR+
Sbjct: 18 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVTRSY 77
Query: 400 EGATTGR-----ITEPDTMN 414
G IT +T N
Sbjct: 78 YRGAAGALLVYDITSRETYN 97
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 91/153 (59%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GK+ ++ ++I F + TIG F + +NVG VKLQ+WDTAGQERFRS+ Y
Sbjct: 35 GTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSY 94
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLV+DIT ++ ++ W+ + + +V+ + GNK DL+ REV EA
Sbjct: 95 YRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEAS 154
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
+++ + ETSAL + +E+ FL ++ ++
Sbjct: 155 RFAQENELMFLETSALTGENVEEAFLKCARTIL 187
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
G GK+ ++ ++I F + TIG F + +NVG VKLQ+
Sbjct: 35 GTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQI 78
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 97/163 (59%), Gaps = 5/163 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ ++VR++ F+ TIG F +++ KVKLQ+WDTAGQERFR++ Y
Sbjct: 17 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 76
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A +LV+D+T +F IK W K + + ++ L +VGNK+D+E +R V ++
Sbjct: 77 YRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGE 135
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQESLHTS 278
+K +G + E+SA D + ++F ++K L QE + ++
Sbjct: 136 ALAKELGIPFIESSAKNDDNVNEIFFTLAK----LIQEKIDSN 174
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ ++VR++ F+ TIG F +++ KVKLQL
Sbjct: 17 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQL 60
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 90/148 (60%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK++++ R+ F+ TIG F T I V +K Q+WDTAG ER+R++ Y
Sbjct: 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 98
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLV+DI ++ ++ ++ W+KEL+ + D +V+ +VGNK+DL R V +EA
Sbjct: 99 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEAR 158
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNV 263
+++ G ++ ETSAL +E F +
Sbjct: 159 AFAEKNGLSFIETSALDSTNVEAAFQTI 186
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK++++ R+ F+ TIG F T I V +K Q+
Sbjct: 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 117 bits (294), Expect = 2e-26, Method: Composition-based stats.
Identities = 57/148 (38%), Positives = 90/148 (60%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK++++ R+ F+ TIG F T I V +K Q+WDTAG ER+R++ Y
Sbjct: 18 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 77
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLV+DI ++ ++ ++ W+KEL+ + D +V+ +VGNK+DL R V +EA
Sbjct: 78 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEAR 137
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNV 263
+++ G ++ ETSAL +E F +
Sbjct: 138 AFAEKNGLSFIETSALDSTNVEAAFQTI 165
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK++++ R+ F+ TIG F T I V +K Q+
Sbjct: 18 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 61
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 90/152 (59%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS++ R++ F + TIG F + + + + V+LQ+WDTAGQERFRS+ P Y
Sbjct: 13 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 72
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R++ A++V+DIT +SF W+ +++ +++ +VGNKTDL R++ EE
Sbjct: 73 RDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQ 132
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
+K + + ETSA ++ +F V+ L+
Sbjct: 133 RAKELSVMFIETSAKTGYNVKQLFRRVASALL 164
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS++ R++ F + TIG F + + + + V+LQL
Sbjct: 13 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 55
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 117 bits (293), Expect = 2e-26, Method: Composition-based stats.
Identities = 57/148 (38%), Positives = 90/148 (60%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK++++ R+ F+ TIG F T I V +K Q+WDTAG ER+R++ Y
Sbjct: 21 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 80
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLV+DI ++ ++ ++ W+KEL+ + D +V+ +VGNK+DL R V +EA
Sbjct: 81 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEAR 140
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNV 263
+++ G ++ ETSAL +E F +
Sbjct: 141 AFAEKNGLSFIETSALDSTNVEAAFQTI 168
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK++++ R+ F+ TIG F T I V +K Q+
Sbjct: 21 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 117 bits (293), Expect = 2e-26, Method: Composition-based stats.
Identities = 57/148 (38%), Positives = 90/148 (60%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK++++ R+ F+ TIG F T I V +K Q+WDTAG ER+R++ Y
Sbjct: 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 74
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLV+DI ++ ++ ++ W+KEL+ + D +V+ +VGNK+DL R V +EA
Sbjct: 75 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEAR 134
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNV 263
+++ G ++ ETSAL +E F +
Sbjct: 135 AFAEKNGLSFIETSALDSTNVEAAFQTI 162
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK++++ R+ F+ TIG F T I V +K Q+
Sbjct: 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 58
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 91/151 (60%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS++ R++ F + TIG F + + + + ++LQ+WDTAGQERFRS+ P Y
Sbjct: 17 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYI 76
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R++ AA++V+DIT +SF W+ +++ +++ +VGNKTDL R+V+ EE
Sbjct: 77 RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGER 136
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
+K + + ETSA ++ +F V+ L
Sbjct: 137 KAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS++ R++ F + TIG F + + + + ++LQL
Sbjct: 17 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQL 59
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 89/145 (61%), Gaps = 1/145 (0%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S+++R+ FS TIG F + + KVKLQ+WDTAGQERFR++ Y
Sbjct: 19 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTY 78
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR + ++V+D+T SF +K W+ E+ +N D+ + +VGNK D + V E+A+
Sbjct: 79 YRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRI-LVGNKNDDPERKVVETEDAY 137
Query: 236 HYSKSIGGTYYETSALQDQGIEDVF 260
++ +G +ETSA ++ +E++F
Sbjct: 138 KFAGQMGIQLFETSAKENVNVEEMF 162
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+S+++R+ FS TIG F + + KVKLQ+
Sbjct: 19 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQI 62
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 90/151 (59%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS++ R++ F + TIG F + + + + V+LQ+WDTAGQERFRS+ P Y
Sbjct: 25 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 84
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R++ A++V+DIT +SF W+ +++ +++ +VGNKTDL R+V+ EE
Sbjct: 85 RDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGER 144
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
+K + + ETSA ++ +F V+ L
Sbjct: 145 KAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS++ R++ F + TIG F + + + + V+LQL
Sbjct: 25 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 67
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 116 bits (291), Expect = 3e-26, Method: Composition-based stats.
Identities = 57/150 (38%), Positives = 90/150 (60%), Gaps = 1/150 (0%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ ++VR++ F+ TIG F +++ KVKLQ+WDTAGQERFR++ Y
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY 72
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A +LV+DIT +F IK W K + + ++ L +VGNK+D E +R V ++
Sbjct: 73 YRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXE-TRVVTADQGE 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
+K +G + E+SA D + ++F ++K
Sbjct: 132 ALAKELGIPFIESSAKNDDNVNEIFFTLAK 161
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ ++VR++ F+ TIG F +++ KVKLQ+
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQI 56
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 90/151 (59%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS++ R++ F + TIG F + + + + V+LQ+WDTAGQERFRS+ P Y
Sbjct: 12 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 71
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R++ A++V+DIT +SF W+ +++ +++ +VGNKTDL R+V+ EE
Sbjct: 72 RDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGER 131
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
+K + + ETSA ++ +F V+ L
Sbjct: 132 KAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS++ R++ F + TIG F + + + + V+LQL
Sbjct: 12 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 54
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 9/157 (5%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKT +V R+ FS TIG F + + +VKLQ+WDTAGQERFR++ YY
Sbjct: 40 VGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYY 99
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R+AN A+L +DIT+ SF ++ W++++++ +V ++GNK+DL REV+ EA
Sbjct: 100 RSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEA-- 157
Query: 237 YSKSIGGTY-----YETSALQDQGIEDVFLNVSKGLI 268
+S+ Y ETSA +E+ FL V+ LI
Sbjct: 158 --QSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKT +V R+ FS TIG F + + +VKLQ+
Sbjct: 40 VGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 82
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 92/157 (58%), Gaps = 8/157 (5%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S+++R+ F ++ TIG F I+V NK KL +WDTAGQERFR++ P Y
Sbjct: 25 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 84
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELK----RNVDEPLVLCVVGNKTDLESSREVNR 231
YR A +LV+D+T+ +F + W+ EL+ RN +V +VGNK D E +REV+R
Sbjct: 85 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRN---DIVNXLVGNKIDKE-NREVDR 140
Query: 232 EEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
E +++ + E SA G++ F + + +I
Sbjct: 141 NEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKII 177
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+S+++R+ F ++ TIG F I+V NK KL +
Sbjct: 25 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 68
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 115 bits (288), Expect = 7e-26, Method: Composition-based stats.
Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKTS++ R+ F T+G F + + K++LQ+WDTAGQERF S+ Y
Sbjct: 36 GVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAY 95
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR+A +LV+DIT+ +F + W+K + + E L +VGNK D E+ RE+ R++
Sbjct: 96 YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGE 155
Query: 236 HYSKSIGGTYY-ETSALQDQGIEDVFLNV 263
+++ I G + E SA + ++++FL +
Sbjct: 156 KFAQQITGMRFCEASAKDNFNVDEIFLKL 184
Score = 32.0 bits (71), Expect = 1.00, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKTS++ R+ F T+G F + + K++LQ+
Sbjct: 36 GVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQI 79
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 115 bits (288), Expect = 8e-26, Method: Composition-based stats.
Identities = 56/150 (37%), Positives = 90/150 (60%), Gaps = 1/150 (0%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ ++VR++ F+ TIG F +++ KVKLQ+WDTAGQERFR++ Y
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 72
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A +LV+D+T +F IK W K + + ++ L +VGNK+D E +R V ++
Sbjct: 73 YRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXE-TRVVTADQGE 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
+K +G + E+SA D + ++F ++K
Sbjct: 132 ALAKELGIPFIESSAKNDDNVNEIFFTLAK 161
Score = 35.8 bits (81), Expect = 0.079, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ ++VR++ F+ TIG F +++ KVKLQL
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQL 56
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 89/150 (59%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ +++R+ +++ TIG F + + VKLQ+WDTAGQERFR++ Y
Sbjct: 31 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 90
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR ++ ++V+D+T SF +K W++E+ R ++ +VGNK DL+ R V + A
Sbjct: 91 YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAK 150
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++ + + ETSAL +ED FL +++
Sbjct: 151 EFADANKMPFLETSALDSTNVEDAFLTMAR 180
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ +++R+ +++ TIG F + + VKLQ+
Sbjct: 31 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 74
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 114 bits (286), Expect = 1e-25, Method: Composition-based stats.
Identities = 56/152 (36%), Positives = 89/152 (58%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKTS++ R+ F ++ TIG F + + + E V+LQ+WDTAGQERFRS+ P Y
Sbjct: 11 AVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSY 70
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
R++ AA++V+DIT SF W++++ + +++ +VGNKTDL R+V EE
Sbjct: 71 IRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGX 130
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
++ ++ETSA I+ +F + L
Sbjct: 131 QKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS++ R+ F ++ TIG F + + + E V+LQL
Sbjct: 11 AVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQL 54
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 89/149 (59%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ +++R+ ++ TIG F I + +KLQ+WDTAGQERFR++ Y
Sbjct: 19 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 78
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A+ ++V+D+T S+A +K W++E+ R E + +VGNK+DL + + V+ A
Sbjct: 79 YRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAK 138
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVS 264
++ S+G + ETSA +E F+ ++
Sbjct: 139 EFADSLGIPFLETSAKNATNVEQAFMTMA 167
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ +++R+ ++ TIG F I + +KLQ+
Sbjct: 19 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 62
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 89/149 (59%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ +++R+ ++ TIG F I + +KLQ+WDTAGQERFR++ Y
Sbjct: 19 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 78
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A+ ++V+D+T S+A +K W++E+ R E + +VGNK+DL + + V+ A
Sbjct: 79 YRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAK 138
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVS 264
++ S+G + ETSA +E F+ ++
Sbjct: 139 EFADSLGIPFLETSAKNATNVEQAFMTMA 167
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ +++R+ ++ TIG F I + +KLQ+
Sbjct: 19 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 62
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 90/151 (59%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS++ R++ F + TIG F + + + + ++LQ+WDTAG ERFRS+ P Y
Sbjct: 24 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYI 83
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R++ AA++V+DIT +SF W+ +++ +++ +VGNKTDL R+V+ EE
Sbjct: 84 RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGER 143
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
+K + + ETSA ++ +F V+ L
Sbjct: 144 KAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL--RTGLKVSKIPVPTRN 398
VGKTS++ R++ F + TIG F + + + + ++LQL GL+ + +P+
Sbjct: 24 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYI 83
Query: 399 REGA 402
R+ A
Sbjct: 84 RDSA 87
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 8/164 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKTS++ +Y+ K FS+ TIGA F T ++ V + V +Q+WDTAGQERF+S+ +
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAF 77
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVD----EPLVLCVVGNKTDLESSR-EVN 230
YR A+ +LVFD+T ++F + +W E E V+GNK DLE+ +
Sbjct: 78 YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATK 137
Query: 231 REEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQES 274
R +A+ YSK+ Y+ETSA + +E F +++ L QE+
Sbjct: 138 RAQAWCYSKN-NIPYFETSAKEAINVEQAFQTIARN--ALKQET 178
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKTS++ +Y+ K FS+ TIGA F T ++ V + V +Q+
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 8/164 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKTS++ +Y+ K FS+ TIGA F T ++ V + V +Q+WDTAGQERF+S+ +
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAF 77
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVD----EPLVLCVVGNKTDLESSR-EVN 230
YR A+ +LVFD+T ++F + +W E E V+GNK DLE+ +
Sbjct: 78 YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATK 137
Query: 231 REEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQES 274
R +A+ YSK+ Y+ETSA + +E F +++ L QE+
Sbjct: 138 RAQAWCYSKN-NIPYFETSAKEAINVEQAFQTIARN--ALKQET 178
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKTS++ +Y+ K FS+ TIGA F T ++ V + V +Q+
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 89/151 (58%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS++ R++ F + TIG F + + + + V+LQ+WDTAG ERFRS+ P Y
Sbjct: 17 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYI 76
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R++ A++V+DIT +SF W+ +++ +++ +VGNKTDL R+V+ EE
Sbjct: 77 RDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGER 136
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
+K + + ETSA ++ +F V+ L
Sbjct: 137 KAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL--RTGLKVSKIPVPTRN 398
VGKTS++ R++ F + TIG F + + + + V+LQL GL+ + +P+
Sbjct: 17 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYI 76
Query: 399 RE 400
R+
Sbjct: 77 RD 78
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 89/151 (58%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS++ R++ F + TIG F + + + + V+LQ+WDTAG ERFRS+ P Y
Sbjct: 27 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYI 86
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R++ A++V+DIT +SF W+ +++ +++ +VGNKTDL R+V+ EE
Sbjct: 87 RDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGER 146
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
+K + + ETSA ++ +F V+ L
Sbjct: 147 KAKELNVMFIETSAKAGYNVKQLFRRVAAAL 177
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL--RTGLKVSKIPVPTRN 398
VGKTS++ R++ F + TIG F + + + + V+LQL GL+ + +P+
Sbjct: 27 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYI 86
Query: 399 RE 400
R+
Sbjct: 87 RD 88
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 95/164 (57%), Gaps = 8/164 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKTS++ +Y+ K FS+ TIGA F T ++ V + V +Q+WDTAGQERF+S+ +
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAF 77
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVD----EPLVLCVVGNKTDLESSR-EVN 230
YR A+ +LVFD+T ++F + +W E E V+GNK D E+ +
Sbjct: 78 YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDFENRQVATK 137
Query: 231 REEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQES 274
R +A+ YSK+ Y+ETSA + +E F +++ L QE+
Sbjct: 138 RAQAWCYSKN-NIPYFETSAKEAINVEQAFQTIARN--ALKQET 178
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKTS++ +Y+ K FS+ TIGA F T ++ V + V +Q+
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 87/145 (60%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK++++ R+ F+ TIG F T + + ++K Q+WDTAGQER+R++ Y
Sbjct: 23 GVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAY 82
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AL+V+DI++ S+ W+ EL+ N D+ + + ++GNK+DL R V EE+
Sbjct: 83 YRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESK 142
Query: 236 HYSKSIGGTYYETSALQDQGIEDVF 260
+++ + ETSAL + ++ F
Sbjct: 143 TFAQENQLLFTETSALNSENVDKAF 167
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK++++ R+ F+ TIG F T + + ++K Q+
Sbjct: 23 GVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQI 66
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 87/149 (58%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ +++R+ ++ TIG F I + +KLQ+WDTAGQERFR++ Y
Sbjct: 9 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 68
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A+ ++V+D+T SF +K W++E+ R E + +VGNK DL + + V+ A
Sbjct: 69 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 128
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVS 264
++ S+G + ETSA +E F+ ++
Sbjct: 129 EFADSLGIPFLETSAKNATNVEQSFMTMA 157
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ +++R+ ++ TIG F I + +KLQ+
Sbjct: 9 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 52
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 87/149 (58%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ +++R+ ++ TIG F I + +KLQ+WDTAGQERFR++ Y
Sbjct: 16 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 75
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A+ ++V+D+T SF +K W++E+ R E + +VGNK DL + + V+ A
Sbjct: 76 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 135
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVS 264
++ S+G + ETSA +E F+ ++
Sbjct: 136 EFADSLGIPFLETSAKNATNVEQSFMTMA 164
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ +++R+ ++ TIG F I + +KLQ+
Sbjct: 16 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 59
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 87/149 (58%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ +++R+ ++ TIG F I + +KLQ+WDTAGQERFR++ Y
Sbjct: 16 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 75
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A+ ++V+D+T SF +K W++E+ R E + +VGNK DL + + V+ A
Sbjct: 76 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 135
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVS 264
++ S+G + ETSA +E F+ ++
Sbjct: 136 EFADSLGIPFLETSAKNATNVEQSFMTMA 164
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ +++R+ ++ TIG F I + +KLQ+
Sbjct: 16 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 59
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 87/149 (58%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ +++R+ ++ TIG F I + +KLQ+WDTAGQERFR++ Y
Sbjct: 26 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 85
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A+ ++V+D+T SF +K W++E+ R E + +VGNK DL + + V+ A
Sbjct: 86 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 145
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVS 264
++ S+G + ETSA +E F+ ++
Sbjct: 146 EFADSLGIPFLETSAKNATNVEQSFMTMA 174
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ +++R+ ++ TIG F I + +KLQ+
Sbjct: 26 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 87/149 (58%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ +++R+ ++ TIG F I + +KLQ+WDTAGQERFR++ Y
Sbjct: 35 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 94
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A+ ++V+D+T SF +K W++E+ R E + +VGNK DL + + V+ A
Sbjct: 95 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 154
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVS 264
++ S+G + ETSA +E F+ ++
Sbjct: 155 EFADSLGIPFLETSAKNATNVEQSFMTMA 183
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ +++R+ ++ TIG F I + +KLQ+
Sbjct: 35 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 78
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 111 bits (278), Expect = 1e-24, Method: Composition-based stats.
Identities = 60/153 (39%), Positives = 87/153 (56%), Gaps = 1/153 (0%)
Query: 116 GVGKTSMVVRYI-GKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
GVGKT ++VR+ G + T+G F ++V KVKLQ+WDTAGQERFRS+
Sbjct: 20 GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHA 79
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEA 234
YYR+A+A LL++D+T SF I+ W+ E+ + L ++GNK D R V RE+
Sbjct: 80 YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDG 139
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
+K G + ETSA ++ F ++K L
Sbjct: 140 EKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 95/164 (57%), Gaps = 8/164 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKTS++ +Y+ K FS+ TIGA F T ++ V + V +Q+WDTAG ERF+S+ +
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAF 77
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVD----EPLVLCVVGNKTDLESSR-EVN 230
YR A+ +LVFD+T ++F + +W E E V+GNK DLE+ +
Sbjct: 78 YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATK 137
Query: 231 REEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQES 274
R +A+ YSK+ Y+ETSA + +E F +++ L QE+
Sbjct: 138 RAQAWCYSKN-NIPYFETSAKEAINVEQAFQTIARN--ALKQET 178
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKTS++ +Y+ K FS+ TIGA F T ++ V + V +Q+
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 86/149 (57%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK +++R+ ++ TIG F I + +KLQ+WDTAGQERFR++ Y
Sbjct: 26 GVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 85
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A+ ++V+D+T SF +K W++E+ R E + +VGNK DL + + V+ A
Sbjct: 86 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 145
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVS 264
++ S+G + ETSA +E F+ ++
Sbjct: 146 EFADSLGIPFLETSAKNATNVEQSFMTMA 174
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 83/145 (57%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ +++R+ ++ TIG F I++ VKLQ+WDTAGQERFR++ Y
Sbjct: 19 GVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSY 78
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A+ ++V+D+T SF +K W++E+ R E + +VGNK DL S R V +E
Sbjct: 79 YRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKRVVTSDEGR 138
Query: 236 HYSKSIGGTYYETSALQDQGIEDVF 260
+ S G + ETSA +E F
Sbjct: 139 ELADSHGIKFIETSAKNAYNVEQAF 163
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ +++R+ ++ TIG F I++ VKLQ+
Sbjct: 19 GVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQI 62
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 84/145 (57%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ +++R+ ++ TIG F I + +KLQ+WDTAGQERFR++ Y
Sbjct: 43 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 102
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A+ ++V+D+T SF +K W++E+ R E + +VGNK DL + + V+ A
Sbjct: 103 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 162
Query: 236 HYSKSIGGTYYETSALQDQGIEDVF 260
++ S+G + ETSA +E F
Sbjct: 163 EFADSLGIPFLETSAKNATNVEQSF 187
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ +++R+ ++ TIG F I + +KLQ+
Sbjct: 43 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 86
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 85/145 (58%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK++++ R+ F+ TIG F T I V K+K Q+WDTAG ER+R++ Y
Sbjct: 20 GVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAY 79
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AL+V+DI++ S+ W+ EL+ N D+ + + ++GNK+DL R V +EA
Sbjct: 80 YRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAK 139
Query: 236 HYSKSIGGTYYETSALQDQGIEDVF 260
+++ + ETSAL ++ F
Sbjct: 140 NFAMENQMLFTETSALNSDNVDKAF 164
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK++++ R+ F+ TIG F T I V K+K Q+
Sbjct: 20 GVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQI 63
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 109 bits (273), Expect = 4e-24, Method: Composition-based stats.
Identities = 52/152 (34%), Positives = 86/152 (56%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKT ++ R+ F+ TIG F I + ++KLQ+WDTAGQERFR++ Y
Sbjct: 16 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 75
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A +LV+DIT SF I+ W++ ++ + + ++GNK D+ R+V++E
Sbjct: 76 YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGE 135
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
+ G + ETSA + +E+ F +++ +
Sbjct: 136 KLALDYGIKFMETSAKANINVENAFFTLARDI 167
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKT ++ R+ F+ TIG F I + ++KLQ+
Sbjct: 16 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 59
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 109 bits (272), Expect = 5e-24, Method: Composition-based stats.
Identities = 52/152 (34%), Positives = 86/152 (56%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKT ++ R+ F+ TIG F I + ++KLQ+WDTAGQERFR++ Y
Sbjct: 18 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 77
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A +LV+DIT SF I+ W++ ++ + + ++GNK D+ R+V++E
Sbjct: 78 YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGE 137
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
+ G + ETSA + +E+ F +++ +
Sbjct: 138 KLALDYGIKFMETSAKANINVENAFFTLARDI 169
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKT ++ R+ F+ TIG F I + ++KLQ+
Sbjct: 18 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 61
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 86/149 (57%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ +++R+ ++ TIG F I + +KLQ+WDTAGQERFR++ Y
Sbjct: 18 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 77
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A+ ++V+D+T SF +K W++E+ R E + +VG K DL + + V+ A
Sbjct: 78 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTKKVVDYTTAK 137
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVS 264
++ S+G + ETSA +E F+ ++
Sbjct: 138 EFADSLGIPFLETSAKNATNVEQSFMTMA 166
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ +++R+ ++ TIG F I + +KLQ+
Sbjct: 18 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 96/164 (58%), Gaps = 7/164 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVK-LQVWDTAGQERFRSMAPM 174
GVGKTS++ RY+ +S TIGA F T ++ V +KV +QVWDTAGQERF+S+
Sbjct: 18 GVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVA 77
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKE--LKRNVDEP--LVLCVVGNKTDLESSRE-V 229
+YR A+ +LV+D+T SF IK+W E + NV+ P ++GNK D E S++ V
Sbjct: 78 FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIV 137
Query: 230 NREEAFHYSKSIGGT-YYETSALQDQGIEDVFLNVSKGLICLSQ 272
+ + A +KS+G + TSA ++ F +++ + +Q
Sbjct: 138 SEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 181
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKV 379
GVGKTS++ RY+ +S TIGA F T ++ V +KV
Sbjct: 18 GVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKV 57
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 82/144 (56%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS + RY F+ T+G F + + ++KLQ+WDTAGQER+R++ YY
Sbjct: 33 VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYY 92
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R A LL++DI SFAA++ W ++K + + +VGNK DLE R V E+
Sbjct: 93 RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRR 152
Query: 237 YSKSIGGTYYETSALQDQGIEDVF 260
+ +G ++E SA ++ ++ VF
Sbjct: 153 LADDLGFEFFEASAKENINVKQVF 176
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS + RY F+ T+G F + + ++KLQ+
Sbjct: 33 VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQI 75
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 86/154 (55%), Gaps = 13/154 (8%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKI---NVGEN-------KVKLQVWDTAGQ 165
GVGKT+ + RY F+ T+G F ++ G N KV LQ+WDTAGQ
Sbjct: 35 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94
Query: 166 ERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV--DEPLVLCVVGNKTDL 223
ERFRS+ ++R+A LL+FD+T SF ++ W+ +L+ N + P ++ ++GNK DL
Sbjct: 95 ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADL 153
Query: 224 ESSREVNREEAFHYSKSIGGTYYETSALQDQGIE 257
REVN +A + G Y+ETSA Q +E
Sbjct: 154 PDQREVNERQARELADKYGIPYFETSAATGQNVE 187
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 81/144 (56%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS + RY F+ T+G F + E +VKLQ+WDTAGQER+R++ YY
Sbjct: 34 VGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYY 93
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R A +L++DIT SF A++ W ++K + + +VGNK D+E R V E+
Sbjct: 94 RGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQL 153
Query: 237 YSKSIGGTYYETSALQDQGIEDVF 260
++ +G ++E SA ++ + F
Sbjct: 154 LAEQLGFDFFEASAKENISVRQAF 177
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS + RY F+ T+G F + E +VKLQ+
Sbjct: 34 VGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQI 76
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 80/144 (55%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS + RY F+ T+G F I + ++KLQ+WDTAGQER+R++ YY
Sbjct: 16 VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYY 75
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R A +L++DIT SF A++ W ++K + + +VGNK D+E R V+ E
Sbjct: 76 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQ 135
Query: 237 YSKSIGGTYYETSALQDQGIEDVF 260
+ +G ++E SA + ++ F
Sbjct: 136 LADHLGFEFFEASAKDNINVKQTF 159
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS + RY F+ T+G F I + ++KLQ+
Sbjct: 16 VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 58
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+SM+ RY +F+ TIG F +I V + V+L +WDTAGQE F ++ Y
Sbjct: 15 AVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAY 74
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEA 234
YR A A +LVF T SF AI +W +++ V D P L V NK DL + EEA
Sbjct: 75 YRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTAL--VQNKIDLLDDSCIKNEEA 132
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVF 260
+K + +Y TS +D + +VF
Sbjct: 133 EGLAKRLKLRFYRTSVKEDLNVSEVF 158
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+SM+ RY +F+ TIG F +I V + V+L L
Sbjct: 15 AVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLML 58
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 86/154 (55%), Gaps = 13/154 (8%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKI---NVGEN-------KVKLQVWDTAGQ 165
GVGKT+ + RY F+ T+G F ++ G + KV LQ+WDTAG
Sbjct: 21 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGL 80
Query: 166 ERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV--DEPLVLCVVGNKTDL 223
ERFRS+ ++R+A LL+FD+T SF ++ W+ +L+ N + P ++ ++GNK DL
Sbjct: 81 ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADL 139
Query: 224 ESSREVNREEAFHYSKSIGGTYYETSALQDQGIE 257
REVN +A ++ G Y+ETSA Q +E
Sbjct: 140 PDQREVNERQARELAEKYGIPYFETSAATGQNVE 173
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 86/154 (55%), Gaps = 13/154 (8%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKI---NVGEN-------KVKLQVWDTAGQ 165
GVGKT+ + RY F+ T+G F ++ G + KV LQ+WDTAG
Sbjct: 21 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGL 80
Query: 166 ERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV--DEPLVLCVVGNKTDL 223
ERFRS+ ++R+A LL+FD+T SF ++ W+ +L+ N + P ++ ++GNK DL
Sbjct: 81 ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADL 139
Query: 224 ESSREVNREEAFHYSKSIGGTYYETSALQDQGIE 257
REVN +A ++ G Y+ETSA Q +E
Sbjct: 140 PDQREVNERQARELAEKYGIPYFETSAATGQNVE 173
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 102 bits (254), Expect = 7e-22, Method: Composition-based stats.
Identities = 56/154 (36%), Positives = 82/154 (53%), Gaps = 13/154 (8%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGEN----------KVKLQVWDTAGQ 165
GVGKT+ + RY F+ T+G F ++ KV LQ+WDTAG
Sbjct: 21 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGL 80
Query: 166 ERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV--DEPLVLCVVGNKTDL 223
ERFRS+ ++R+A LL FD+T SF ++ W +L+ N + P ++ ++GNK DL
Sbjct: 81 ERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV-LIGNKADL 139
Query: 224 ESSREVNREEAFHYSKSIGGTYYETSALQDQGIE 257
REVN +A ++ G Y+ETSA Q +E
Sbjct: 140 PDQREVNERQARELAEKYGIPYFETSAATGQNVE 173
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 84/154 (54%), Gaps = 13/154 (8%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKI---NVGEN-------KVKLQVWDTAGQ 165
GVGKT+ + RY F+ T+G F ++ G + KV LQ+WDTAG
Sbjct: 21 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGL 80
Query: 166 ERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV--DEPLVLCVVGNKTDL 223
ERFRS+ ++R+A LL FD+T SF ++ W +L+ N + P ++ ++GNK DL
Sbjct: 81 ERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV-LIGNKADL 139
Query: 224 ESSREVNREEAFHYSKSIGGTYYETSALQDQGIE 257
REVN +A ++ G Y+ETSA Q +E
Sbjct: 140 PDQREVNERQARELAEKYGIPYFETSAATGQNVE 173
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 90/158 (56%), Gaps = 9/158 (5%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFR-SMAPMY 175
VGKT + R+ F TIG F +++ ++K+Q+WDTAGQERFR SM Y
Sbjct: 31 VGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHY 90
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNV---DEPLVLCVVGNKTDLESSREVNRE 232
YRN +A + V+D+T SF ++ W++E K+++ D P +L VGNK DL S+ +V +
Sbjct: 91 YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRIL--VGNKCDLRSAIQVPTD 148
Query: 233 EAFHYSKSIGGTYYETSAL---QDQGIEDVFLNVSKGL 267
A ++ + +ETSA + +E +F+ ++ L
Sbjct: 149 LAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKT + R+ F TIG F +++ ++K+QL
Sbjct: 31 VGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQL 73
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 84/162 (51%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS + RY F+ T+G F I + ++KLQ+WDTAG ER+R++ YY
Sbjct: 19 VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYY 78
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R A +L +DIT SF A++ W ++K + + +VGNK D E R V+ E
Sbjct: 79 RGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDERVVSSERGRQ 138
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQESLHTS 278
+ +G ++E SA + ++ F + + ESL T+
Sbjct: 139 LADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDTA 180
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS + RY F+ T+G F I + ++KLQ+
Sbjct: 19 VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S++ RY+ F + TIG F + V + V +Q+WDTAGQERFRS+ +
Sbjct: 21 GVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPF 80
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVD----EPLVLCVVGNKTDLESSREVNR 231
YR ++ LL F + SF + W KE D E ++GNKTD++ R+V+
Sbjct: 81 YRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIK-ERQVST 139
Query: 232 EEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
EEA + K G Y+ETSA + F
Sbjct: 140 EEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+S++ RY+ F + TIG F + V + V +Q+
Sbjct: 21 GVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQI 64
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 83/148 (56%), Gaps = 15/148 (10%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGEN----------KVKLQVWDTAGQ 165
GVGKTS++ +Y F+ T+G F ++ N ++ LQ+WDTAG
Sbjct: 21 GVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL 80
Query: 166 ERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV---DEPLVLCVVGNKTD 222
ERFRS+ ++R+A LL+FD+T SF ++ W+ +L+ + + +VLC GNK+D
Sbjct: 81 ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLC--GNKSD 138
Query: 223 LESSREVNREEAFHYSKSIGGTYYETSA 250
LE R V EEA ++ G Y+ETSA
Sbjct: 139 LEDQRAVKEEEARELAEKYGIPYFETSA 166
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 9/158 (5%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFR-SMAPMY 175
VGKT + R+ F TIG F +++ ++K+Q+WDTAGQERFR SM Y
Sbjct: 40 VGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHY 99
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNV---DEPLVLCVVGNKTDLESSREVNRE 232
YRN +A + V+D T SF ++ W++E K+++ D P +L VGNK DL S+ +V +
Sbjct: 100 YRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRIL--VGNKCDLRSAIQVPTD 157
Query: 233 EAFHYSKSIGGTYYETSAL---QDQGIEDVFLNVSKGL 267
A ++ + +ETSA + +E +F ++ L
Sbjct: 158 LAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKT + R+ F TIG F +++ ++K+QL
Sbjct: 40 VGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQL 82
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 77/140 (55%), Gaps = 6/140 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S++ RY+ F + TIG F + V + V +Q+WDTAGQERFRS+ +
Sbjct: 17 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPF 76
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVD----EPLVLCVVGNKTDLESSREVNR 231
YR ++ LL F + SF + W KE D E ++GNK D+ S R+V+
Sbjct: 77 YRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI-SERQVST 135
Query: 232 EEAFHYSKSIGGT-YYETSA 250
EEA + + G Y+ETSA
Sbjct: 136 EEAQAWCRDNGDYPYFETSA 155
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+S++ RY+ F + TIG F + V + V +Q+
Sbjct: 17 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 60
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 77/140 (55%), Gaps = 6/140 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S++ RY+ F + TIG F + V + V +Q+WDTAGQERFRS+ +
Sbjct: 19 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPF 78
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVD----EPLVLCVVGNKTDLESSREVNR 231
YR ++ LL F + SF + W KE D E ++GNK D+ S R+V+
Sbjct: 79 YRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI-SERQVST 137
Query: 232 EEAFHYSKSIGGT-YYETSA 250
EEA + + G Y+ETSA
Sbjct: 138 EEAQAWCRDNGDYPYFETSA 157
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+S++ RY+ F + TIG F + V + V +Q+
Sbjct: 19 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 62
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 6/156 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S ++R F +IS T+G F + V + LQ+WDTAGQERFRS+A Y
Sbjct: 38 AVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSY 97
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
+R A+ LL++D+T SF I+ WV ++ E + + +VGNK D+ + ++
Sbjct: 98 FRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCV 157
Query: 236 --HYSKSIGGTY----YETSALQDQGIEDVFLNVSK 265
H+ + + TY ETSA I + L++++
Sbjct: 158 PGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAR 193
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 80/163 (49%), Gaps = 6/163 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S++ RY+ F TIG F + V V LQ+WDTAGQERF+S+ +
Sbjct: 17 GVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPF 76
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVD----EPLVLCVVGNKTDLESSREVNR 231
YR A+ LL F + SF + W KE D E V+GNK D E R+V
Sbjct: 77 YRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKE-DRQVTT 135
Query: 232 EEAFHYSKSIGGT-YYETSALQDQGIEDVFLNVSKGLICLSQE 273
EEA + G Y ETSA D + F + ++ + ++
Sbjct: 136 EEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQ 178
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+S++ RY+ F TIG F + V V LQ+
Sbjct: 17 GVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQI 60
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 95.5 bits (236), Expect = 7e-20, Method: Composition-based stats.
Identities = 43/110 (39%), Positives = 67/110 (60%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ +++R+ ++ TIG F I + +KLQ+WDTAGQERFR++ Y
Sbjct: 8 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 67
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLES 225
YR A+ ++V+D+T SF +K W++E+ R E + +VGNK DL +
Sbjct: 68 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 117
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ +++R+ ++ TIG F I + +KLQ+
Sbjct: 8 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 51
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 5/154 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GKT+ V R++ F PT+G + +K VWDTAGQE+F + Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE-PLVLCVVGNKTDLESSREVNREEA 234
Y A A+++FD+T ++ + W ++L R + P+VLC GNK D++ + +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC--GNKVDIKDRKVKAKSIV 137
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
FH K++ YY+ SA + E FL +++ LI
Sbjct: 138 FHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 5/154 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GKT+ V R++ F PT+G + +K VWDTAGQE+F + Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE-PLVLCVVGNKTDLESSREVNREEA 234
Y A A+++FD+T ++ + W ++L R + P+VLC GNK D++ + +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC--GNKVDIKDRKVKAKSIV 137
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
FH K++ YY+ SA + E FL +++ LI
Sbjct: 138 FHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 5/154 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GKT+ V R++ F T+G + +K VWDTAGQE+F + Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE-PLVLCVVGNKTDLESSREVNREEA 234
Y A A+++FD+T ++ + W ++L R + P+VLC GNK D++ + +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC--GNKVDIKDRKVKAKSIV 137
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
FH K++ YY+ SA + E FL +++ LI
Sbjct: 138 FHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 5/154 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GKT+ V R++ F T+G + +K VWDTAGQE+F + Y
Sbjct: 13 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 72
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE-PLVLCVVGNKTDLESSREVNREEA 234
Y A A+++FD+T ++ + W ++L R + P+VLC GNK D++ + +
Sbjct: 73 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC--GNKVDIKDRKVKAKSIV 130
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
FH K++ YY+ SA + E FL +++ LI
Sbjct: 131 FHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 162
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 5/154 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GKT+ V R++ F T+G + +K VWDTAGQE+F + Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLEDGY 79
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE-PLVLCVVGNKTDLESSREVNREEA 234
Y A A+++FD+T ++ + W ++L R + P+VLC GNK D++ + +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC--GNKVDIKDRKVKAKSIV 137
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
FH K++ YY+ SA + E FL +++ LI
Sbjct: 138 FHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 5/154 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GKT+ V R++ F T+G + +K VWDTAGQE+F + Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE-PLVLCVVGNKTDLESSREVNREEA 234
Y A A+++FD+T ++ + W ++L R + P+VLC GNK D++ + +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC--GNKVDIKDRKVKAKSIV 137
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
FH K++ YY+ SA + E FL +++ LI
Sbjct: 138 FHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 5/154 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GKT+ V R++ F T+G + +K VWDTAGQE+F + Y
Sbjct: 25 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 84
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE-PLVLCVVGNKTDLESSREVNREEA 234
Y A A+++FD+T ++ + W ++L R + P+VLC GNK D++ + +
Sbjct: 85 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC--GNKVDIKDRKVKAKSIV 142
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
FH K++ YY+ SA + E FL +++ LI
Sbjct: 143 FHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 174
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 5/154 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GKT+ V R++ F T+G + +K VWDTAGQE+F + Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE-PLVLCVVGNKTDLESSREVNREEA 234
Y A A+++FD+T ++ + W ++L R + P+VLC GNK D++ + +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC--GNKVDIKDRKVKAKSIV 137
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
FH K++ YY+ SA + E FL +++ LI
Sbjct: 138 FHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 5/154 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GKT+ V R++ F T+G + +K VWDTAGQE+F + Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE-PLVLCVVGNKTDLESSREVNREEA 234
Y A A++ FD+T ++ + W ++L R + P+VLC GNK D++ + +
Sbjct: 80 YIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC--GNKVDIKDRKVKAKSIV 137
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
FH K++ YY+ SA + E FL +++ LI
Sbjct: 138 FHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 5/154 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GKT+ V R++ F T+G + +K VWDTAGQE++ + Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLRDGY 79
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE-PLVLCVVGNKTDLESSREVNREEA 234
Y A A+++FD+T ++ + W ++L R + P+VLC GNK D++ + +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC--GNKVDIKDRKVKAKSIV 137
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
FH K++ YY+ SA + E FL +++ LI
Sbjct: 138 FHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 7/153 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQY 71
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNRE 232
R L VF I SF I + +++KR + D P+VL VGNK DL ++R V
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESR 128
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
+A ++S G Y ETSA QG+ED F + +
Sbjct: 129 QAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 7/153 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQY 71
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNRE 232
R L VF I SF I + +++KR + D P+VL VGNK DL ++R V
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESR 128
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
+A ++S G Y ETSA QG+ED F + +
Sbjct: 129 QAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 40/182 (21%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINV------------------------- 150
VGK+S+V+R F + + TIGASF T +N+
Sbjct: 17 SVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNN 76
Query: 151 ----------GEN--KVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIK 198
EN +K +WDTAGQER+ S+ P+YYR A A++VFDI+ ++ K
Sbjct: 77 VIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK 136
Query: 199 TWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIED 258
TWV +LK + ++ +V NK D ++ +V+ E Y++ + +TSA I++
Sbjct: 137 TWVNQLK--ISSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKN 193
Query: 259 VF 260
+F
Sbjct: 194 IF 195
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINV 374
VGK+S+V+R F + + TIGASF T +N+
Sbjct: 17 SVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNL 51
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 7/153 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQY 71
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNRE 232
R L VF I SF I + +++KR + D P+VL VGNK DL ++R V
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESR 128
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
+A ++S G Y ETSA QG+ED F + +
Sbjct: 129 QAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 86/151 (56%), Gaps = 2/151 (1%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ ++++ F PT S+ + GE +V++ + DTAGQE + ++ Y
Sbjct: 24 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGQEDYAAIRDNY 82
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKR-NVDEPLVLCVVGNKTDLESSREVNREEA 234
+R+ L VF IT+ SFAA + +++ R DE + +VGNK+DLE R+V+ EEA
Sbjct: 83 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA 142
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
+ ++ Y ETSA ++ VF ++ +
Sbjct: 143 KNRAEQWNVNYVETSAKTRANVDKVFFDLMR 173
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ ++++ F PT S+ + GE +V++ + DTAGQE + ++ Y
Sbjct: 28 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGQEDYAAIRDNY 86
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKR-NVDEPLVLCVVGNKTDLESSREVNREEA 234
+R+ L VF IT+ SFAA + +++ R DE + +VGNK+DLE R+V+ EEA
Sbjct: 87 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA 146
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
+ ++ Y ETSA ++ VF ++ + +
Sbjct: 147 KNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ ++++ F PT S+ + GE +V++ + DTAGQE + ++ Y
Sbjct: 16 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGQEDYAAIRDNY 74
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKR-NVDEPLVLCVVGNKTDLESSREVNREEA 234
+R+ L VF IT+ SFAA + +++ R DE + +VGNK+DLE R+V+ EEA
Sbjct: 75 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA 134
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
+ ++ Y ETSA ++ VF ++ + +
Sbjct: 135 KNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 84/158 (53%), Gaps = 15/158 (9%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGA-----SFFTAKINVGENKVKLQVWDTAGQERFRS 170
G GKT+ V R++ F TIG SF+T N GE +K VWDTAG E+F
Sbjct: 22 GTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYT---NFGE--IKFDVWDTAGLEKFGG 76
Query: 171 MAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE-PLVLCVVGNKTDLESSREV 229
+ YY NA A+++FD+T ++ + W ++L R + P+VLC GNK D++ +
Sbjct: 77 LRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC--GNKVDVKERKVK 134
Query: 230 NREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
+ FH K++ YY+ SA + E FL +++ L
Sbjct: 135 AKTITFHRKKNL--QYYDISAKSNYNFEKPFLWLARKL 170
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 80/153 (52%), Gaps = 7/153 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQY 71
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNRE 232
R L VF I SF I + +++KR + D P+VL VGNK DL + R V
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AGRTVESR 128
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
+A ++S G Y ETSA QG+ED F + +
Sbjct: 129 QAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 84/158 (53%), Gaps = 15/158 (9%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGA-----SFFTAKINVGENKVKLQVWDTAGQERFRS 170
G GKT+ V R++ F TIG SF+T N GE +K VWDTAG E+F
Sbjct: 14 GTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYT---NFGE--IKFDVWDTAGLEKFGG 68
Query: 171 MAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE-PLVLCVVGNKTDLESSREV 229
+ YY NA A+++FD+T ++ + W ++L R + P+VLC GNK D++ +
Sbjct: 69 LRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC--GNKVDVKERKVK 126
Query: 230 NREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
+ FH K++ YY+ SA + E FL +++ L
Sbjct: 127 AKTITFHRKKNL--QYYDISAKSNYNFEKPFLWLARKL 162
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 84/158 (53%), Gaps = 15/158 (9%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGA-----SFFTAKINVGENKVKLQVWDTAGQERFRS 170
G GKT+ V R++ F TIG SF+T N GE +K VWDTAG E+F
Sbjct: 15 GTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYT---NFGE--IKFDVWDTAGLEKFGG 69
Query: 171 MAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE-PLVLCVVGNKTDLESSREV 229
+ YY NA A+++FD+T ++ + W ++L R + P+VLC GNK D++ +
Sbjct: 70 LRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC--GNKVDVKERKVK 127
Query: 230 NREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
+ FH K++ YY+ SA + E FL +++ L
Sbjct: 128 AKTITFHRKKNL--QYYDISAKSNYNFEKPFLWLARKL 163
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 85/151 (56%), Gaps = 2/151 (1%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ ++++ F PT S+ + GE +V++ + DTAGQE + ++ Y
Sbjct: 14 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGQEDYAAIRDNY 72
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKR-NVDEPLVLCVVGNKTDLESSREVNREEA 234
+R+ L VF IT+ SFAA + +++ R DE + +VGNK+DLE R+V+ EEA
Sbjct: 73 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA 132
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
+ + Y ETSA ++ VF ++ +
Sbjct: 133 KNRADQWNVNYVETSAKTRANVDKVFFDLMR 163
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 5/154 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GKT+ V R++ F T+G + +K VWDTAG E+F + Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGY 79
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE-PLVLCVVGNKTDLESSREVNREEA 234
Y A A+++FD+T ++ + W ++L R + P+VLC GNK D++ + +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC--GNKVDIKDRKVKAKSIV 137
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
FH K++ YY+ SA + E FL +++ LI
Sbjct: 138 FHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 5/154 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GKT+ V R++ F T+G + +K VWDTAG E+F + Y
Sbjct: 16 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGY 75
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE-PLVLCVVGNKTDLESSREVNREEA 234
Y A A+++FD+T ++ + W ++L R + P+VLC GNK D++ + +
Sbjct: 76 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC--GNKVDIKDRKVKAKSIV 133
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
FH K++ YY+ SA + E FL +++ LI
Sbjct: 134 FHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 165
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 5/154 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GKT+ V R++ F T+G + +K VWDTAG E+F + Y
Sbjct: 22 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGY 81
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE-PLVLCVVGNKTDLESSREVNREEA 234
Y A A+++FD+T ++ + W ++L R + P+VLC GNK D++ + +
Sbjct: 82 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC--GNKVDIKDRKVKAKSIV 139
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
FH K++ YY+ SA + E FL +++ LI
Sbjct: 140 FHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 171
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 82/151 (54%), Gaps = 3/151 (1%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y
Sbjct: 14 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQY 72
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEA 234
R L VF I SF I + +++KR D E + + +VGNK+DL SR V+ ++A
Sbjct: 73 MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQA 131
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++S G + ETSA QG++D F + +
Sbjct: 132 QDLARSYGIPFIETSAKTRQGVDDAFYTLVR 162
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 82/153 (53%), Gaps = 7/153 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y
Sbjct: 14 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQY 72
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNRE 232
R L VF I SF I + +++KR + D P+VL VGNK DL SR V+ +
Sbjct: 73 MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVL--VGNKCDL-PSRTVDTK 129
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
+A ++S G + ETSA QG++D F + +
Sbjct: 130 QAQDLARSYGIPFIETSAKTRQGVDDAFYTLVR 162
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 5/154 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GKT+ V R++ T+G + +K VWDTAGQE+F + Y
Sbjct: 25 GTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 84
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE-PLVLCVVGNKTDLESSREVNREEA 234
Y A A+++FD+T ++ + W ++L R + P+VLC GNK D++ + +
Sbjct: 85 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC--GNKVDIKDRKVKAKSIV 142
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
FH K++ YY+ SA + E FL +++ LI
Sbjct: 143 FHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 174
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 86/152 (56%), Gaps = 3/152 (1%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ ++++ F PT S+ + GE +V++ + DTAG E + ++ Y
Sbjct: 13 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGLEDYAAIRDNY 71
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKR--NVDEPLVLCVVGNKTDLESSREVNREE 233
+R+ LLVF IT++ SF A + +++ R ++ + L VVGNK+DLE R+V EE
Sbjct: 72 FRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEE 131
Query: 234 AFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
A ++ G Y ETSA ++ VF ++ +
Sbjct: 132 ARSKAEEWGVQYVETSAKTRANVDKVFFDLMR 163
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 86/152 (56%), Gaps = 3/152 (1%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ ++++ F PT S+ + GE +V++ + DTAG E + ++ Y
Sbjct: 17 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGLEDYAAIRDNY 75
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKR--NVDEPLVLCVVGNKTDLESSREVNREE 233
+R+ LLVF IT++ SF A + +++ R ++ + L VVGNK+DLE R+V EE
Sbjct: 76 FRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEE 135
Query: 234 AFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
A ++ G Y ETSA ++ VF ++ +
Sbjct: 136 ARSKAEEWGVQYVETSAKTRANVDKVFFDLMR 167
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 85/151 (56%), Gaps = 2/151 (1%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ ++++ F PT S+ + GE +V++ + DTAG E + ++ Y
Sbjct: 16 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGLEDYAAIRDNY 74
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKR-NVDEPLVLCVVGNKTDLESSREVNREEA 234
+R+ L VF IT+ SFAA + +++ R DE + +VGNK+DLE R+V+ EEA
Sbjct: 75 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA 134
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
+ ++ Y ETSA ++ VF ++ +
Sbjct: 135 KNRAEQWNVNYVETSAKTRANVDKVFFDLMR 165
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 80/150 (53%), Gaps = 7/150 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 92
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SFA I + +++KR + D P+VL VGNK DL +R V+ ++A
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVL--VGNKCDL-PTRTVDTKQAH 149
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
+KS G + ETSA QG+ED F + +
Sbjct: 150 ELAKSYGIPFIETSAKTRQGVEDAFYTLVR 179
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 7/152 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
++S G Y ETSA QG+ED F + + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 7/152 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK+DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKSDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
++S G Y ETSA QG+ED F + + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 7/152 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
++S G Y ETSA QG+ED F + + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 7/152 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK+DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKSDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
++S G Y ETSA QG+ED F + + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 79
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 136
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++S G Y ETSA QG+ED F + +
Sbjct: 137 DLARSYGIPYIETSAKTRQGVEDAFYTLVR 166
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 79
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 136
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++S G Y ETSA QG+ED F + +
Sbjct: 137 DLARSYGIPYIETSAKTRQGVEDAFYTLVR 166
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 7/152 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
++S G Y ETSA QG+ED F + + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 81
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 138
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++S G Y ETSA QG+ED F + +
Sbjct: 139 DLARSYGIPYIETSAKTRQGVEDAFYTLVR 168
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 79.0 bits (193), Expect = 6e-15, Method: Composition-based stats.
Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 6/145 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ +++I F PTI S+ T + + + +L + DTAGQE F +M Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKRNVDE---PLVLCVVGNKTDLESSREVNREEAF 235
LLVF +T SF I + +++ R D P++L +GNK DL+ R+V +EE
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMIL--IGNKADLDHQRQVTQEEGQ 134
Query: 236 HYSKSIGGTYYETSALQDQGIEDVF 260
++ + TY E SA ++ F
Sbjct: 135 QLARQLKVTYMEASAKIRMNVDQAF 159
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 7/152 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
++S G Y ETSA QG+ED F + + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++S G Y ETSA QG+ED F + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINV-GENKVKLQVWDTAGQERFRSMAPMYY 176
GKTS+ + + F TIG FF +I + G V LQ+WD GQ M Y
Sbjct: 18 GKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYI 77
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDE----PLVLCVVGNKTDLESSREVNRE 232
A LLV+DIT Y SF ++ W +K+ +E PLV +VGNK DLE R + E
Sbjct: 78 YGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLV-ALVGNKIDLEHMRTIKPE 136
Query: 233 EAFHYSKSIGGTYYETSA 250
+ + + G + + SA
Sbjct: 137 KHLRFCQENGFSSHFVSA 154
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 78/152 (51%), Gaps = 7/152 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K ++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
++S G Y ETSA QG+ED F + + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 78.6 bits (192), Expect = 9e-15, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++S G Y ETSA QG+ED F + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++S G Y ETSA QG+ED F + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++S G Y ETSA QG+ED F + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 6/163 (3%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ +++I F PTI S+ T +V +L + DTAGQE F +M Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 179 ANAALLVFDITQYHSFAAIK---TWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
+ LLVF I SF + T + +K D P+VL VGNK DLES R+V R EA
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVL--VGNKADLESQRQVPRSEAS 138
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQESLHTS 278
+ S Y+E SA +++ F + + + ++ L S
Sbjct: 139 AFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQELPPS 181
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++S G Y ETSA QG+ED F + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++S G Y ETSA QG+ED F + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F P+I S+ + GE + L + DTAGQE + +M Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 80
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 137
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++S G Y ETSA QG+ED F + +
Sbjct: 138 DLARSYGIPYIETSAKTRQGVEDAFYTLVR 167
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 75
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHY 237
L VF I SF I + +++KR D E + + +VGNK+DL SR V+ ++A
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQDL 134
Query: 238 SKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
++S G + ETSA QG++D F + + +
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 75
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHY 237
L VF I SF I + +++KR D E + + +VGNK+DL SR V+ ++A
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQDL 134
Query: 238 SKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
++S G + ETSA QG++D F + + +
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 7/152 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DT GQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTGGQEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
++S G Y ETSA QG+ED F + + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDEYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++S G Y ETSA QG+ED F + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 7/152 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAG+E + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGKEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
++S G Y ETSA QG+ED F + + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGN+ DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNRCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++S G Y ETSA QG+ED F + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 7/152 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAG E + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGHEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
++S G Y ETSA QG+ED F + + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++S G Y ETSA QG+ED F + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F P+I S+ + GE + L + DTAGQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++S G Y ETSA QG+ED F + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 7/152 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAG E + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXL-LDILDTAGGEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
++S G Y ETSA QG+ED F + + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 7/150 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAG E + +M Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGLEEYSAMRDQYMRT 79
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 136
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++S G Y ETSA QG+ED F + +
Sbjct: 137 DLARSYGIPYIETSAKTRQGVEDAFYTLVR 166
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 7/152 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAG E + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGGEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
++S G Y ETSA QG+ED F + + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 76.3 bits (186), Expect = 4e-14, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 7/150 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DT GQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTTGQEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++S G Y ETSA QG+ED F + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 76.3 bits (186), Expect = 5e-14, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 77/150 (51%), Gaps = 7/150 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAGQE +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEASAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++S G Y ETSA QG+ED F + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 7/152 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAG E + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGLEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
++S G Y ETSA QG+ED F + + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 7/152 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAG E + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGVEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
++S G Y ETSA QG+ED F + + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 7/152 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAG E + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGIEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKCDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
++S G Y ETSA QG+ED F + + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 13/157 (8%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGA-----SFFTAKINVGENKVKLQVWDTAGQERFRS 170
GVGKT+ + R + F + + T+GA +F + NV +K VWDTAGQE+
Sbjct: 21 GVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNV----IKFNVWDTAGQEKKAV 76
Query: 171 MAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV--DEPLVLCVVGNKTDLESSRE 228
+ +YY A+ A+L FD+T + + WVKE + V + P+V+C NK D+++ ++
Sbjct: 77 LKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVC--ANKIDIKNRQK 134
Query: 229 VNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++++ K Y+E SA FL++++
Sbjct: 135 ISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLAR 171
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 75.9 bits (185), Expect = 6e-14, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 7/150 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTA QE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAAQEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKXDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++S G Y ETSA QG+ED F + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 75.9 bits (185), Expect = 7e-14, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 7/150 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTA QE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAAQEEYSAMRDQYMRT 74
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNREEAF 235
L VF I SF I + +++KR + D P+VL VGNK DL ++R V +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKXDL-AARTVESRQAQ 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++S G Y ETSA QG+ED F + +
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 83/155 (53%), Gaps = 7/155 (4%)
Query: 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
+GVGK+++ V+++ +F PTI S+ ++ V + L++ DTAG E+F +M +
Sbjct: 14 VGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTEQFTAMRDL 72
Query: 175 YYRNANAALLVFDITQYHSF---AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNR 231
Y +N LV+ IT +F ++ + +K D P++L VGNK DLE R V +
Sbjct: 73 YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMIL--VGNKCDLEDERVVGK 130
Query: 232 EEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSK 265
E+ + ++ + E+SA + ++F ++ +
Sbjct: 131 EQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVR 165
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 18/169 (10%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + +L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 72 YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 129
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVFLNVSKGLIC 269
+ + +K IG Y E SAL +G++ VF + ++C
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 178
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 76/158 (48%), Gaps = 16/158 (10%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT M++ Y G F PT+ +F +A + V + V L +WDTAGQE + + P+
Sbjct: 16 AVGKTCMLISYTGNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLS 74
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKRNVDE-PLVLCVVGNKTDLESSRE----- 228
YR A+ LL F + S+ I K W+ ELK P+VL VG K DL ++
Sbjct: 75 YRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVL--VGTKLDLRDDKQFLKDH 132
Query: 229 -----VNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + K IG Y E S+ Q ++ VF
Sbjct: 133 PGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 18/169 (10%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + +L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 72 YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 129
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVFLNVSKGLIC 269
+ + +K IG Y E SAL +G++ VF + ++C
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 178
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 18/169 (10%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 15 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 73
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + +L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 74 YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 131
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVFLNVSKGLIC 269
+ + +K IG Y E SAL +G++ VF + ++C
Sbjct: 132 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 3/150 (2%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ ++ I F PTI S+ + GE + L + DTAG E + +M Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGHEEYSAMRDQYMRT 92
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHY 237
L VF I SF I + +++KR D E + + +VGNK DL SR V+ ++A
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQDL 151
Query: 238 SKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
++S G + ETSA QG++D F + + +
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 18/169 (10%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 17 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 75
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + +L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 76 YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 133
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVFLNVSKGLIC 269
+ + +K IG Y E SAL +G++ VF + ++C
Sbjct: 134 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 182
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 82/154 (53%), Gaps = 7/154 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ V+++ +F PTI S+ ++ V + L++ DTAG E+F +M +Y
Sbjct: 13 GVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTEQFTAMRDLY 71
Query: 176 YRNANAALLVFDITQYHSF---AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNRE 232
+N LV+ IT +F ++ + +K D P++L VGNK DLE R V +E
Sbjct: 72 MKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMIL--VGNKCDLEDERVVGKE 129
Query: 233 EAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSK 265
+ + ++ + E+SA + ++F ++ +
Sbjct: 130 QGQNLARQWNNCAFLESSAKSKINVNEIFYDLVR 163
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ V+++ +F PTI S+ ++ V + L++ DTAG E+F +M +Y
Sbjct: 13 GVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLY 71
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEA 234
+N LV+ IT +F ++ +++ R D E + + +VGNK DLE R V +E+
Sbjct: 72 MKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG 131
Query: 235 FHYSKS-IGGTYYETSALQDQGIEDVFLNVSK 265
+ ++ + E+SA + ++F ++ +
Sbjct: 132 QNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS+ +++ FS PT+ + ++ + +G+++ L + DTAGQ+ + + +
Sbjct: 35 VGKTSLAHQFVEGEFSEGYDPTV-ENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFI 93
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLV-LCVVGNKTDLESSREVNREEAF 235
+ +LV+ +T HSF I++ ++L + V + +VGNK DL REV E
Sbjct: 94 IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGK 153
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNV 263
++S G T+ E+SA ++Q + +F V
Sbjct: 154 KLAESWGATFMESSARENQLTQGIFTKV 181
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ V+++ +F PTI S+ ++ V + L++ DTAG E+F +M +Y
Sbjct: 13 GVGKSALTVQFVQGIFVDEYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLY 71
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEA 234
+N LV+ IT +F ++ +++ R D E + + +VGNK DLE R V +E+
Sbjct: 72 MKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG 131
Query: 235 FHYSKS-IGGTYYETSALQDQGIEDVFLNVSK 265
+ ++ + E+SA + ++F ++ +
Sbjct: 132 QNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++VVR++ K F PT+ S + + + + V +++ DTAGQE +
Sbjct: 38 GVGKSALVVRFLTKRFIWEYDPTL-ESTYRHQATIDDEVVSMEILDTAGQED-TIQREGH 95
Query: 176 YRNANAALLVFDITQYHSFAAI---KTWVKELKRNVDEPLVLCVVGNKTDLESSREVNRE 232
R +LV+DIT SF + K + E+K+ + L+L VGNK DL+ SR+V+ E
Sbjct: 96 MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLIL--VGNKADLDHSRQVSTE 153
Query: 233 EAFHYSKSIGGTYYETSALQDQG-IEDVFLNVSK 265
E + + +YE SA +G I ++F + +
Sbjct: 154 EGEKLATELACAFYECSACTGEGNITEIFYELCR 187
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASF 367
GVGK+++VVR++ K F PT+ +++
Sbjct: 38 GVGKSALVVRFLTKRFIWEYDPTLESTY 65
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 18/169 (10%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 129
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVFLNVSKGLIC 269
+ + +K IG Y E SAL +G++ VF + ++C
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 178
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 18/169 (10%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 129
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVFLNVSKGLIC 269
+ + +K IG Y E SAL +G++ VF + ++C
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 178
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT M++ Y F PT+ +F +A + V N V L +WDTAGQE + + P+
Sbjct: 16 AVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQEDYNRLRPLS 74
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKRNVDEPLVLCVVGNKTDLESSRE------ 228
YR A+ +L F + S+ + K W+ EL R+ + + +VG K DL ++
Sbjct: 75 YRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFFIDHP 133
Query: 229 ----VNREEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
+ + K IG Y E S+ Q ++ VF
Sbjct: 134 GAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKTS+VV Y + PT F+A ++V V+LQ+ DTAGQ+ F + P+
Sbjct: 30 AVGKTSLVVSYTTNGYPTEYIPT-AFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLC 88
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKRNVDE-PLVLCVVGNKTDLESS------- 226
Y N + LL F + SF + + WV E++ + + P++L VG ++DL
Sbjct: 89 YTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIIL--VGTQSDLREDVKVLIEL 146
Query: 227 -----REVNREEAFHYSKSI-GGTYYETSALQDQGIEDVF 260
+ V E A ++ I +Y E SAL + +++VF
Sbjct: 147 DKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 2/148 (1%)
Query: 114 WLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAP 173
+ VGK+S+ ++++ F PTI +F T I V + LQ+ DTAGQ+ +
Sbjct: 14 YRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQ 72
Query: 174 MYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLV-LCVVGNKTDLESSREVNRE 232
Y + N +LV+ +T SF IK +L V + + + +VGNK DL R ++ E
Sbjct: 73 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYE 132
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVF 260
E ++S + E+SA ++Q DVF
Sbjct: 133 EGKALAESWNAAFLESSAKENQTAVDVF 160
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 2/148 (1%)
Query: 114 WLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAP 173
+ VGK+S+ ++++ F PTI +F T I V + LQ+ DTAGQ+ +
Sbjct: 14 YRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQ 72
Query: 174 MYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLV-LCVVGNKTDLESSREVNRE 232
Y + N +LV+ +T SF IK +L V + + + +VGNK DL R ++ E
Sbjct: 73 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYE 132
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVF 260
E ++S + E+SA ++Q DVF
Sbjct: 133 EGKALAESWNAAFLESSAKENQTAVDVF 160
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 83/156 (53%), Gaps = 8/156 (5%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S+V+R++ F PT+ ++ I+ ++ LQ+ DT G +F +M +
Sbjct: 13 GVGKSSLVLRFVKGTFRESYIPTVEDTYRQV-ISCDKSICTLQITDTTGSHQFPAMQRLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIK---TWVKELKRNVDEPLVLCVVGNKTDLESSREVNRE 232
+A +LV+ IT S +K + E+K +V E + + +VGNK D SREV
Sbjct: 72 ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDV-ESIPIMLVGNKCDESPSREVQSS 130
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVF---LNVSK 265
EA +++ + ETSA + ++++F LN+ K
Sbjct: 131 EAEALARTWKCAFMETSAKLNHNVKELFQELLNLEK 166
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 2/148 (1%)
Query: 114 WLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAP 173
+ VGK+S+ ++++ F PTI +F T I V + LQ+ DTAGQ+ +
Sbjct: 12 YRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQ 70
Query: 174 MYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLV-LCVVGNKTDLESSREVNRE 232
Y + N +LV+ +T SF IK +L V + + + +VGNK DL R ++ E
Sbjct: 71 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYE 130
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVF 260
E ++S + E+SA ++Q DVF
Sbjct: 131 EGKALAESWNAAFLESSAKENQTAVDVF 158
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 18/169 (10%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAG E + + P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 129
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVFLNVSKGLIC 269
+ + +K IG Y E SAL +G++ VF + ++C
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 178
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 2/148 (1%)
Query: 114 WLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAP 173
+ VGK+S+ ++++ F PTI +F T I V + LQ+ DTAGQ+ +
Sbjct: 9 YRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQ 67
Query: 174 MYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLV-LCVVGNKTDLESSREVNRE 232
Y + N +LV+ +T SF IK +L V + + + +VGNK DL R ++ E
Sbjct: 68 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYE 127
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVF 260
E ++S + E+SA ++Q DVF
Sbjct: 128 EGKALAESWNAAFLESSAKENQTAVDVF 155
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 18/169 (10%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAG E + + P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 129
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVFLNVSKGLIC 269
+ + +K IG Y E SAL +G++ VF + ++C
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 178
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT M++ Y F PT+ +F +A + V V L +WDTAGQE + + P+
Sbjct: 19 AVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLS 77
Query: 176 YRNANAALLVFDITQYHSFA-AIKTWVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
YR A+ +L F + S+ +K W+ EL+R + P+VL VG K DL +
Sbjct: 78 YRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVL--VGTKLDLRDDKGYLADH 135
Query: 229 ---VNREEAFHYSKSIG-GTYYETSALQDQGIEDVF 260
+ + K IG Y E S+ Q ++ VF
Sbjct: 136 TNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y FS PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 23 AVGKTCLLISYTTNAFSGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 81
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 82 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 139
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + +K IG Y E SAL +G++ VF
Sbjct: 140 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 129
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + +K IG Y E SAL +G++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 129
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + +K IG Y E SAL +G++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 129
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + +K IG Y E SAL +G++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 129
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + +K IG Y E SAL +G++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 18/169 (10%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNVDE-PLVLCVVGNKTDLESSRE----- 228
Y + L+ F + S+ ++ W E++ + P++L VG K DL ++
Sbjct: 72 YPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIIL--VGTKLDLRDDKDTIEKL 129
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVFLNVSKGLIC 269
+ + +K I Y E SAL +G++ VF + ++C
Sbjct: 130 KEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLC 178
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 32 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 90
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 91 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 148
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + +K IG Y E SAL +G++ VF
Sbjct: 149 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 18/169 (10%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAG E + + P+
Sbjct: 165 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLS 223
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 224 YPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 281
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVFLNVSKGLIC 269
+ + +K IG Y E SAL +G++ VF + ++C
Sbjct: 282 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 18/169 (10%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAG E + + P+
Sbjct: 165 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLS 223
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 224 YPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 281
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVFLNVSKGLIC 269
+ + +K IG Y E SAL +G++ VF + ++C
Sbjct: 282 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 18/170 (10%)
Query: 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
+ VGKT +++ Y F PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 18 VAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQEDYDRLRPL 76
Query: 175 YYRNANAALLVFDITQYHSFAAIKT-WVKELKRNVDE-PLVLCVVGNKTDLESSRE---- 228
Y + L+ F + S+ ++ W E++ + P++L VG K DL ++
Sbjct: 77 SYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIIL--VGTKLDLRDDKDTIEK 134
Query: 229 --------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVFLNVSKGLIC 269
+ + +K I Y E SAL +G++ VF + ++C
Sbjct: 135 LKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLC 184
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 18/169 (10%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAG E + + P+
Sbjct: 165 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLS 223
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 224 YPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 281
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVFLNVSKGLIC 269
+ + +K IG Y E SAL +G++ VF + ++C
Sbjct: 282 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 40 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 98
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 99 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 156
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + +K IG Y E SAL +G++ VF
Sbjct: 157 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 16/158 (10%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ +F +A + V V L +WDTAGQE + + P+
Sbjct: 18 AVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLS 76
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKRNVDE-PLVLCVVGNKTDLESSRE----- 228
YR A+ +L F + S+ + K W+ ELK P+VL VG K DL ++
Sbjct: 77 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVL--VGTKLDLRDDKQFFIDH 134
Query: 229 -----VNREEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
+ + K IG Y E S+ + ++ VF
Sbjct: 135 PGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 16/159 (10%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNVDEPLVLCVVGNKTDLESSRE------ 228
Y + L+ F + SF ++ W E++ + +L +VG K DL ++
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPIL-LVGTKLDLRDDKDTIERLR 130
Query: 229 ------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + ++ IG Y E SAL +G++ VF
Sbjct: 131 DKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GKTS+++ + F +PT+ + + V V L +WDTAGQ+ + + P++
Sbjct: 44 GCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDDYDRLRPLF 102
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKRNVDE-PLVLCVVGNKTDLESSREV---- 229
Y +A+ LL FD+T +SF I W E+ + P++ VVG KTDL + +
Sbjct: 103 YPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPII--VVGCKTDLRKDKSLVNKL 160
Query: 230 --NREEAFHY------SKSIGG-TYYETSALQDQGIEDVF 260
N E Y ++S+G Y E SA + VF
Sbjct: 161 RRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 16/159 (10%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 14 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 72
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNVDEPLVLCVVGNKTDLESSRE------ 228
Y + L+ F + SF ++ W E++ + +L +VG K DL ++
Sbjct: 73 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPIL-LVGTKLDLRDDKDTIERLR 131
Query: 229 ------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + ++ IG Y E SAL +G++ VF
Sbjct: 132 DKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 22/163 (13%)
Query: 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
+ GKT +++ + F PT+ ++ A I V +V+L +WDTAGQE + + P+
Sbjct: 15 VACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPL 73
Query: 175 YYRNANAALLVFDITQYHSFAAI-KTWVKELKR---NVDEPLVLCVVGNKTDLESSREVN 230
Y + + L+ F I S I + W E+K NV P++L VGNK DL +
Sbjct: 74 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV--PIIL--VGNKKDLRNDEHTR 129
Query: 231 R------------EEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
R EE + IG Y E SA G+ +VF
Sbjct: 130 RELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 16/159 (10%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 14 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 72
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNVDEPLVLCVVGNKTDLESSRE------ 228
Y + L+ F + SF ++ W E++ + +L +VG K DL ++
Sbjct: 73 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPIL-LVGTKLDLRDDKDTIERLR 131
Query: 229 ------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + ++ IG Y E SAL +G++ VF
Sbjct: 132 DKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK +++ Y F PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 20 AVGKNCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 78
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 79 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 136
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + +K IG Y E SAL +G++ VF
Sbjct: 137 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 22/162 (13%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GKT +++ + F PT+ ++ A I V +V+L +WDTAGQE + + P+
Sbjct: 15 ACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 73
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNR 231
Y + + L+ F I S I + W E+K NV P++L VGNK DL + R
Sbjct: 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV--PIIL--VGNKKDLRNDEHTRR 129
Query: 232 ------------EEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
EE + IG Y E SA G+ +VF
Sbjct: 130 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 40 AVGKTCLLISYTTNALPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 98
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 99 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 156
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + +K IG Y E SAL +G++ VF
Sbjct: 157 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 22/162 (13%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GKT +++ + F PT+ ++ A I V +V+L +WDTAGQE + + P+
Sbjct: 17 ACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 75
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNR 231
Y + + L+ F I S I + W E+K NV P++L VGNK DL + R
Sbjct: 76 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV--PIIL--VGNKKDLRNDEHTRR 131
Query: 232 ------------EEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
EE + IG Y E SA G+ +VF
Sbjct: 132 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 22/162 (13%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GKT +++ + F PT+ ++ A I V +V+L +WDTAGQE + + P+
Sbjct: 16 ACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 74
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNR 231
Y + + L+ F I S I + W E+K NV P++L VGNK DL + R
Sbjct: 75 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV--PIIL--VGNKKDLRNDEHTRR 130
Query: 232 ------------EEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
EE + IG Y E SA G+ +VF
Sbjct: 131 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 22/162 (13%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GKT +++ + F PT+ ++ A I V +V+L +WDTAGQE + + P+
Sbjct: 19 ACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 77
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNR 231
Y + + L+ F I S I + W E+K NV P++L VGNK DL + R
Sbjct: 78 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV--PIIL--VGNKKDLRNDEHTRR 133
Query: 232 ------------EEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
EE + IG Y E SA G+ +VF
Sbjct: 134 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAG E + + P+
Sbjct: 16 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLS 74
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 75 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 132
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + +K IG Y E SAL +G++ VF
Sbjct: 133 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 22/162 (13%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GKT +++ + F PT+ ++ A I V +V+L +WDTAGQE + + P+
Sbjct: 18 ACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 76
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNR 231
Y + + L+ F I S I + W E+K NV P++L VGNK DL + R
Sbjct: 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV--PIIL--VGNKKDLRNDEHTRR 132
Query: 232 ------------EEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
EE + IG Y E SA G+ +VF
Sbjct: 133 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 22/162 (13%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GKT +++ + F PT+ ++ A I V +V+L +WDTAGQE + + P+
Sbjct: 17 ACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 75
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNR 231
Y + + L+ F I S I + W E+K NV P++L VGNK DL + R
Sbjct: 76 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV--PIIL--VGNKKDLRNDEHTRR 131
Query: 232 ------------EEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
EE + IG Y E SA G+ +VF
Sbjct: 132 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAG E + + P+
Sbjct: 40 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLS 98
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 99 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 156
Query: 229 -------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + +K IG Y E SAL +G++ VF
Sbjct: 157 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 22/162 (13%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GKT +++ + F PT+ ++ A I V +V+L +WDTAGQE + + P+
Sbjct: 17 ACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 75
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNR 231
Y + + L+ F I S I + W E+K NV P++L VGNK DL + R
Sbjct: 76 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV--PIIL--VGNKKDLRNDEHTRR 131
Query: 232 ------------EEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
EE + IG Y E SA G+ +VF
Sbjct: 132 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 83/158 (52%), Gaps = 15/158 (9%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
GKT+++ + F + PT+ ++ TA + +++L +WDT+G + ++ P+ Y
Sbjct: 39 CGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSY 97
Query: 177 RNANAALLVFDITQYHSF-AAIKTW---VKELKRNVDEPLVLCVVGNKTDLESSRE---- 228
+++A L+ FDI++ + + +K W ++E N LV C +TD+ + E
Sbjct: 98 PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNH 157
Query: 229 ----VNREEAFHYSKSIG-GTYYETSALQDQ-GIEDVF 260
V+ ++ + +K IG TY E SALQ + + D+F
Sbjct: 158 RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ + + VG + L ++DTAGQE + + P+
Sbjct: 28 AVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLS 86
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNV-DEPLVLCVVGNKTDLESS------- 226
Y + L+ F + SF +K WV ELK + P +L +G + DL
Sbjct: 87 YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLL--IGTQIDLRDDPKTLARL 144
Query: 227 -----REVNREEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
+ + E+ +K IG Y E SAL +G++ VF
Sbjct: 145 NDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 83/158 (52%), Gaps = 15/158 (9%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
GKT+++ + F + PT+ ++ TA + +++L +WDT+G + ++ P+ Y
Sbjct: 34 CGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSY 92
Query: 177 RNANAALLVFDITQYHSF-AAIKTW---VKELKRNVDEPLVLCVVGNKTDLESSRE---- 228
+++A L+ FDI++ + + +K W ++E N LV C +TD+ + E
Sbjct: 93 PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNH 152
Query: 229 ----VNREEAFHYSKSIG-GTYYETSALQDQ-GIEDVF 260
V+ ++ + +K IG TY E SALQ + + D+F
Sbjct: 153 RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 190
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 83/158 (52%), Gaps = 15/158 (9%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
GKT+++ + F + PT+ ++ TA + +++L +WDT+G + ++ P+ Y
Sbjct: 18 CGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSY 76
Query: 177 RNANAALLVFDITQYHSF-AAIKTW---VKELKRNVDEPLVLCVVGNKTDLESSRE---- 228
+++A L+ FDI++ + + +K W ++E N LV C +TD+ + E
Sbjct: 77 PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNH 136
Query: 229 ----VNREEAFHYSKSIG-GTYYETSALQDQ-GIEDVF 260
V+ ++ + +K IG TY E SALQ + + D+F
Sbjct: 137 RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 18/161 (11%)
Query: 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
+ VGKT +++ Y F PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 19 VAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQEDYDRLRPL 77
Query: 175 YYRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE---- 228
Y + L+ F + S+ ++ W E++ + P++L VG K DL ++
Sbjct: 78 SYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIIL--VGTKLDLRDDKDTIEK 135
Query: 229 --------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + +K I Y E SAL +G++ VF
Sbjct: 136 LKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 22/162 (13%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GKT +++ F PT+ ++ A I V +V+L +WDTAGQE + + P+
Sbjct: 13 ACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNR 231
Y + + L+ F I S I + W E+K NV P++L VGNK DL + R
Sbjct: 72 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV--PIIL--VGNKKDLRNDEHTRR 127
Query: 232 ------------EEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
EE + IG Y E SA G+ +VF
Sbjct: 128 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 86/173 (49%), Gaps = 19/173 (10%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
GKT+M+ + PT+ ++ TA + E +V+L +WDT+G + ++ P+ Y
Sbjct: 38 CGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCY 96
Query: 177 RNANAALLVFDITQYHSF-AAIKTWVKELKRNVDEPLVLCVVGNKTDL------------ 223
+++A LL FDI++ + +A+K W E+ VL ++G KTDL
Sbjct: 97 SDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVL-LIGCKTDLRTDLSTLMELSH 155
Query: 224 ESSREVNREEAFHYSKSIGG-TYYETSAL-QDQGIEDVFLNVSKGLICLSQES 274
+ ++ E+ +K +G Y E SA ++ I +F S ++CL++ S
Sbjct: 156 QKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTAS--MLCLNKPS 206
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 22/162 (13%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GKT +++ F PT+ ++ A I V +V+L +WDTAGQE + + P+
Sbjct: 13 ACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNR 231
Y + + L+ F I S I + W E+K NV P++L VGNK DL + R
Sbjct: 72 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV--PIIL--VGNKKDLRNDEHTRR 127
Query: 232 ------------EEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
EE + IG Y E SA G+ +VF
Sbjct: 128 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 22/162 (13%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GKT +++ + F PT+ ++ A I V +V+L +WDTAGQE + + P+
Sbjct: 35 ACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLS 93
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNR 231
Y + + L+ F I S I + W E+K NV P++L VGNK DL R
Sbjct: 94 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV--PIIL--VGNKKDLRQDEHTRR 149
Query: 232 EEAFHYSKSIGGT-------------YYETSALQDQGIEDVF 260
E A + + Y E SA +G+ +VF
Sbjct: 150 ELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 22/162 (13%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GKT +++ F PT+ ++ A I V +V+L +WDTAGQE + + P+
Sbjct: 15 ACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 73
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNR 231
Y + + L+ F I S I + W E+K NV P++L VGNK DL + R
Sbjct: 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV--PIIL--VGNKKDLRNDEHTRR 129
Query: 232 ------------EEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
EE + IG Y E SA G+ +VF
Sbjct: 130 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 22/163 (13%)
Query: 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
+ GKT +++ + F PT+ ++ A I V +V+L +WDTAGQE + P+
Sbjct: 14 VACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRARPL 72
Query: 175 YYRNANAALLVFDITQYHSFAAI-KTWVKELKR---NVDEPLVLCVVGNKTDLESSREVN 230
Y + + L+ F I S I + W E+K NV P++L VGNK DL +
Sbjct: 73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV--PIIL--VGNKKDLRNDEHTA 128
Query: 231 RE------------EAFHYSKSIGG-TYYETSALQDQGIEDVF 260
RE E + IG Y E SA G+ +VF
Sbjct: 129 RELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 22/162 (13%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GKT +++ F PT+ ++ A I V +V+L +WDTAGQE + + P+
Sbjct: 15 ACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 73
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNR 231
Y + + L+ F I S I + W E+K NV P++L VGNK DL + R
Sbjct: 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV--PIIL--VGNKKDLRNDEHTRR 129
Query: 232 ------------EEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
EE + IG Y E SA G+ +VF
Sbjct: 130 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 22/162 (13%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GKT +++ + F PT+ ++ A I V +V+L +WDTAGQE + + P+
Sbjct: 35 ACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLS 93
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNR 231
Y + + L+ F I S I + W E+K NV P++L VGNK DL R
Sbjct: 94 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNV--PIIL--VGNKKDLRQDEHTRR 149
Query: 232 EEAFHYSKSIGGT-------------YYETSALQDQGIEDVF 260
E A + + Y E SA +G+ +VF
Sbjct: 150 ELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 22/162 (13%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GKT +++ F PT+ ++ A I V +V+L +WDTAGQE + + P+
Sbjct: 15 ACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 73
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNR 231
Y + + L+ F I S I + W E+K NV P++L VGNK DL + R
Sbjct: 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV--PIIL--VGNKKDLRNDEHTRR 129
Query: 232 ------------EEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
EE + IG Y E SA G+ +VF
Sbjct: 130 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 8/148 (5%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ +++ K+F PTI S+ + L V DTAGQE F +M Y R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHY 237
+ L+V+ +T SF + + + + R D E + +V NK DL R+V R++
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 238 SKSIGGTYYETSALQDQGIEDVFLNVSK 265
+ Y ETSA +D LNV K
Sbjct: 150 ATKYNIPYIETSA------KDPPLNVDK 171
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 8/148 (5%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ +++ K+F PTI S+ + L V DTAGQE F +M Y R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHY 237
+ L+V+ +T SF + + + + R D E + +V NK DL R+V R++
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 238 SKSIGGTYYETSALQDQGIEDVFLNVSK 265
+ Y ETSA +D LNV K
Sbjct: 150 ATKYNIPYIETSA------KDPPLNVDK 171
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 18/158 (11%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYR 177
GKT +++ F PT+ ++ A + V +V+L +WDTAGQE + + P+ Y
Sbjct: 22 GKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQEDYDRLRPLSYP 80
Query: 178 NANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDL------------ 223
++N L+ F I S ++ W+ E+ P++L VG K DL
Sbjct: 81 DSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIIL--VGCKVDLRNDPQTIEQLRQ 138
Query: 224 ESSREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
E + V +E + IG T YYE SA G+ +VF
Sbjct: 139 EGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 22/170 (12%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GKT +++ + F PT+ ++ A I V +V+L +WDTAGQE + + P+
Sbjct: 35 ACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 93
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNR 231
Y + + L+ F + S I + WV E+K NV P++L V NK DL S V
Sbjct: 94 YPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNV--PIIL--VANKKDLRSDEHVRT 149
Query: 232 EEAFHYSKSI-------------GGTYYETSALQDQGIEDVFLNVSKGLI 268
E A + + Y E SA +G+ +VF ++ +
Sbjct: 150 ELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL 199
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 6/152 (3%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ V+++ F PTI F+ +I V + L++ DTAG E+F SM +Y +N
Sbjct: 16 KSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 179 ANAALLVFDITQYHSFAAIKTW---VKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
+LV+ + SF IK + +KR P++L VGNK DLES REV+ E
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVIL--VGNKVDLESEREVSSSEGR 132
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
++ G + ETSA ++++F + + +
Sbjct: 133 ALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 8/148 (5%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ +++ K+F PTI S+ + L V DTAGQE F +M Y R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSY-RKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHY 237
+ L+V+ +T SF + + + + R D E + +V NK DL R+V R++
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 238 SKSIGGTYYETSALQDQGIEDVFLNVSK 265
+ Y ETSA +D LNV K
Sbjct: 150 ATKYNIPYIETSA------KDPPLNVDK 171
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 8/148 (5%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+++ +++ K+F PTI S+ + L V DTAGQE F +M Y R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 179 ANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHY 237
+ L+V+ +T SF + + + + R D E + +V NK DL R+V R++
Sbjct: 85 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 238 SKSIGGTYYETSALQDQGIEDVFLNVSK 265
+ Y ETSA +D LNV K
Sbjct: 145 ATKYNIPYIETSA------KDPPLNVDK 166
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 22/162 (13%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GKT +++ F PT+ ++ A I V +V+L +WDTAGQE + + P+
Sbjct: 15 ACGKTCLLIVNSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLS 73
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNR 231
Y + + L+ F I S I + W E+K NV P++L VGNK DL R
Sbjct: 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV--PIIL--VGNKKDLRQDEHTRR 129
Query: 232 EEAFHYSKSIGGT-------------YYETSALQDQGIEDVF 260
E A + + Y E SA +G+ +VF
Sbjct: 130 ELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 37/188 (19%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ +A + V V L +WDTAGQE + + P+
Sbjct: 15 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 73
Query: 176 YRN-------------------ANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVL 214
Y A+ L+ F + SF ++ W E++ + + P++L
Sbjct: 74 YPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 133
Query: 215 CVVGNKTDLESSRE------------VNREEAFHYSKSIGGT-YYETSALQDQGIEDVFL 261
VG K DL ++ + + +K IG Y E SAL +G++ VF
Sbjct: 134 --VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 191
Query: 262 NVSKGLIC 269
+ ++C
Sbjct: 192 EAIRAVLC 199
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ + PT+ +F + + + L +WDTAGQE + + P+
Sbjct: 33 AVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEEYDRLRPLS 91
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNVDEPLVLCVVGNKTDL--ESSREVNRE 232
Y +++ LL F + SF I T W E+K +D + +VG K DL + S +V ++
Sbjct: 92 YADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLRKDGSDDVTKQ 150
Query: 233 EAFHYSKSIGG-TYYETSALQDQGIEDVF 260
E + +G Y E S++ G+ +VF
Sbjct: 151 EGDDLCQKLGCVAYIEASSVAKIGLNEVF 179
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 72/162 (44%), Gaps = 22/162 (13%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GKT +++ F PT+ ++ A I V +V+L +WDTAG E + + P+
Sbjct: 18 ACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLS 76
Query: 176 YRNANAALLVFDITQYHSFAAI-KTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNR 231
Y + + L+ F I S I + W E+K NV P++L VGNK DL + R
Sbjct: 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV--PIIL--VGNKKDLRNDEHTRR 132
Query: 232 ------------EEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
EE + IG Y E SA G+ +VF
Sbjct: 133 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ + PT+ +F + + + L +WDTAGQE + + P+
Sbjct: 32 AVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEEYDRLRPLS 90
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNVDEPLVLCVVGNKTDL--ESSREVNRE 232
Y +++ LL F + SF I T W E+K +D + +VG K DL + S +V ++
Sbjct: 91 YADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLRKDGSDDVTKQ 149
Query: 233 EAFHYSKSIGG-TYYETSALQDQGIEDVF 260
E + +G Y E S++ G+ +VF
Sbjct: 150 EGDDLCQKLGCVAYIEASSVAKIGLNEVF 178
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 18/161 (11%)
Query: 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
+ VGKT +++ Y F PT+ ++ + +G L ++DTAGQE + + P+
Sbjct: 12 VAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 175 YYRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 71 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEK 128
Query: 226 -----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 129 LAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ + +G L ++DTAGQE + + P+
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVXIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 129
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 19/172 (11%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYR 177
GKT+M+ + PT+ ++ TA + E +V+L +WDT+G + ++ P+ Y
Sbjct: 22 GKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYS 80
Query: 178 NANAALLVFDITQYHSF-AAIKTWVKELKRNVDEPLVLCVVGNKTDL------------E 224
+++A LL FDI++ + +A+K W E+ VL ++G KTDL +
Sbjct: 81 DSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVL-LIGCKTDLRTDLSTLMELSHQ 139
Query: 225 SSREVNREEAFHYSKSIGG-TYYETSAL-QDQGIEDVFLNVSKGLICLSQES 274
++ E+ +K +G Y E SA ++ I +F S ++CL++ S
Sbjct: 140 KQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTAS--MLCLNKPS 189
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 19/172 (11%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYR 177
GKT+M+ + PT+ ++ TA + E +V+L +WDT+G + ++ P+ Y
Sbjct: 23 GKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYS 81
Query: 178 NANAALLVFDITQYHSF-AAIKTWVKELKRNVDEPLVLCVVGNKTDL------------E 224
+++A LL FDI++ + +A+K W E+ VL ++G KTDL +
Sbjct: 82 DSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVL-LIGCKTDLRTDLSTLMELSHQ 140
Query: 225 SSREVNREEAFHYSKSIGG-TYYETSAL-QDQGIEDVFLNVSKGLICLSQES 274
++ E+ +K +G Y E SA ++ I +F S ++CL++ S
Sbjct: 141 KQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTAS--MLCLNKPS 190
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ + +G L ++DTAGQE + + P+
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 129
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ + +G L ++DTAGQE + + P+
Sbjct: 14 AVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS 72
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 73 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 130
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 131 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ + +G L ++DTAGQE + + P+
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 129
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ + +G L ++DTAGQE + + P+
Sbjct: 16 AVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS 74
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 75 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 132
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 133 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ + +G L ++DTAGQE + + P+
Sbjct: 15 AVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS 73
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 74 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 131
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 132 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ + +G L ++DTAGQE + + P+
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 129
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ + +G L ++DTAGQE + + P+
Sbjct: 23 AVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS 81
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 82 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 139
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 140 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ + +G L ++DTAGQE + + P+
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 129
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ + +G L ++DTAGQE + + P+
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 129
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ + +G L ++DTAGQE + + P+
Sbjct: 20 AVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS 78
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 79 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 136
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 137 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ + +G L ++DTAGQE + + P+
Sbjct: 17 AVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS 75
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 76 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 133
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 134 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ + +G L ++DTAGQE + + P+
Sbjct: 16 AVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS 74
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 75 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 132
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 133 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ + +G L ++DTAGQE + + P+
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 129
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ + +G L ++DTAGQE + + P+
Sbjct: 15 AVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS 73
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 74 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 131
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 132 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ + +G L ++DTAGQE + + P+
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 129
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 119 KTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178
K+S+V+R++ F PTI ++ I+ ++ LQ+ DT G +F +M +
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQV-ISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 179 ANAALLVFDITQYHS---FAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
+A +LVF +T S I + ++K +V++ V+ +VGNK D E+ REV+ EA
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVM-LVGNKCD-ETQREVDTREAQ 137
Query: 236 HYSKSIGGTYYETSALQDQGIEDVF 260
++ + ETSA + ++++F
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELF 162
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++ + +G L + DTAGQE + + P+
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLRDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 129
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F P + ++ + +G L ++DTAGQE + + P+
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPAVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 129
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y PT+ ++ + +G L ++DTAGQE + + P+
Sbjct: 13 AVGKTCLLISYTTNKLPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 129
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK +++ Y F PT+ ++ + +G L ++DTAGQE + + P+
Sbjct: 20 AVGKNCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS 78
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 79 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 136
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 137 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ + + + +G L ++DTAG E + + P+
Sbjct: 17 AVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLS 75
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 76 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 133
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 134 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ + + + +G L ++DTAG E + + P+
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDE-PLVLCVVGNKTDLES-------- 225
Y + L+ F + SF +K WV E+ + + P +L VG + DL
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL--VGTQIDLRDDPSTIEKL 129
Query: 226 ----SREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVF 260
+ + E A ++ + Y E SAL +G+++VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 8/142 (5%)
Query: 117 VGKTSMVVRYI--GKMFSHHISPTIGASFFTAKINVGENKVKLQVW--DTAGQERFRSMA 172
VGK++++ + G F + T G A + + + V ++++ DTAG + ++
Sbjct: 31 VGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQI 90
Query: 173 PMYYRNANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSR-E 228
Y+ A+LVFD++ SF + K W + LK + + PL +V NKTDL R +
Sbjct: 91 SQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ 150
Query: 229 VNREEAFHYSKSIGGTYYETSA 250
V + A ++ + +++ SA
Sbjct: 151 VRLDMAQDWATTNTLDFFDVSA 172
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYR 177
GKT+ V FS + PT+G F K+ G V +++WD GQ RFRSM Y R
Sbjct: 34 GKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKG--NVTIKIWDIGGQPRFRSMWERYCR 89
Query: 178 NANAALLVFDITQYHSFAAIKTWVKELKRNVDEP----LVLCVVGNKTDL 223
NA + + D A + EL +D+P + + V+GNK DL
Sbjct: 90 GVNAIVYMIDAADREKIEASRN---ELHNLLDKPQLQGIPVLVLGNKRDL 136
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYR 177
GKT+ V F+ + PT+G F KI G +KL WD GQ RFRSM Y R
Sbjct: 34 GKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCR 89
Query: 178 NANAALLVFDITQYHSFAAIKTWVKELKRNVDEP----LVLCVVGNKTDL 223
+A + + D A K EL +D+P + + V+GNK DL
Sbjct: 90 GVSAIVYMVDAADQEKIEASKN---ELHNLLDKPQLQGIPVLVLGNKRDL 136
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQ-ERFRSMAPM 174
GVGK+++ + G H + +I V + +V L V+D Q + +
Sbjct: 12 GVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDH 71
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNR 231
+ +A L+VF +T SF+ + + L+ + D P++L VGNK+DL SREV+
Sbjct: 72 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL--VGNKSDLARSREVSL 129
Query: 232 EEAFHYSKSIGGTYYETSALQDQGIEDVF 260
EE H + ++ + ETSA ++F
Sbjct: 130 EEGRHLAGTLSCKHIETSAALHHNTRELF 158
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYR 177
GKT+ V F+ + PT+G F KI G +KL WD GQ RFRSM Y R
Sbjct: 43 GKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCR 98
Query: 178 NANAALLVFDITQYHSFAAIKTWVKELKRNVDEP----LVLCVVGNKTDL 223
+A + + D A K EL +D+P + + V+GNK DL
Sbjct: 99 GVSAIVYMVDAADQEKIEASKN---ELHNLLDKPQLQGIPVLVLGNKRDL 145
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ + G P + +I V + +V L V+D Q A +
Sbjct: 33 GVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ----GDAGGW 88
Query: 176 YRN-----ANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSR 227
R+ +A L+VF +T SF+ + + L+ + D P++L VGNK+DL SR
Sbjct: 89 LRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL--VGNKSDLARSR 146
Query: 228 EVNREEAFHYSKSIGGTYYETSALQDQGIEDVF 260
EV+ EE H + ++ + ETSA ++F
Sbjct: 147 EVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQ-ERFRSMAPM 174
GVGK+++ + G + + +I V + +V L V+D Q + +
Sbjct: 22 GVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDH 81
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSREVNR 231
+ +A L+VF +T SF+ + + L+ + D P++L VGNK+DL SREV+
Sbjct: 82 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL--VGNKSDLARSREVSL 139
Query: 232 EEAFHYSKSIGGTYYETSALQDQGIEDVF 260
EE H + ++ + ETSA ++F
Sbjct: 140 EEGRHLAGTLSCKHIETSAALHHNTRELF 168
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 78/153 (50%), Gaps = 14/153 (9%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GK+++ V+++ K F P + ++ +++ V V L+V DTA + R+ Y
Sbjct: 31 GAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRN-CERY 88
Query: 176 YRNANAALLVFDITQYHSFAAIKTWV-------KELKRNVDEPLVLCVVGNKTDLESSRE 228
A+A L+V+ + SF + +++ KE +R++ P +L +GNK D+ R+
Sbjct: 89 LNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSI--PALL--LGNKLDMAQYRQ 144
Query: 229 VNREEAFHYSKSIGGTYYETSALQD-QGIEDVF 260
V + E + G ++E SA D + ++ VF
Sbjct: 145 VTKAEGVALAGRFGCLFFEVSACLDFEHVQHVF 177
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 13/127 (10%)
Query: 116 GVGKTSMVVRY-IGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
G GKT+++ + +G++ + PTIG + T + + VWD GQ+R RS+
Sbjct: 27 GAGKTTVLYKLKLGEVIT--TIPTIGFNVETVQYK----NISFTVWDVGGQDRIRSLWRH 80
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE--PLVLCVVGNKTDLE---SSREV 229
YYRN + V D + V + N DE V V NK DL S+ E+
Sbjct: 81 YYRNTEGVIFVIDSNDRSRIGEARE-VMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEI 139
Query: 230 NREEAFH 236
+ H
Sbjct: 140 TEKLGLH 146
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 7/153 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ R G + + G ++ + + GE + L V+D Q+ R +
Sbjct: 12 GVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGE-EASLMVYDIWEQDGGRWLPGHC 69
Query: 176 YRNANAALLVFDITQYHSF---AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNRE 232
+A ++V+ +T SF + ++ ++ ++ D P++L VGNK+DL SREV+ +
Sbjct: 70 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIIL--VGNKSDLVRSREVSVD 127
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
E + + ETSA ++ +F V +
Sbjct: 128 EGRACAVVFDCKFIETSAALHHNVQALFEGVVR 160
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 7/153 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ R G + + G ++ + + GE + L V+D Q+ R +
Sbjct: 17 GVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGE-EASLMVYDIWEQDGGRWLPGHC 74
Query: 176 YRNANAALLVFDITQYHSF---AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNRE 232
+A ++V+ +T SF + ++ ++ ++ D P++L VGNK+DL SREV+ +
Sbjct: 75 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIIL--VGNKSDLVRSREVSVD 132
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
E + + ETSA ++ +F V +
Sbjct: 133 EGRACAVVFDCKFIETSAALHHNVQALFEGVVR 165
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 7/153 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ R G + + G ++ + + GE + L V+D Q+ R +
Sbjct: 17 GVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGE-EASLMVYDIWEQDGGRWLPGHC 74
Query: 176 YRNANAALLVFDITQYHSF---AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNRE 232
+A ++V+ +T SF + ++ ++ ++ D P++L VGNK+DL SREV+ +
Sbjct: 75 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIIL--VGNKSDLVRSREVSVD 132
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
E + + ETSA ++ +F V +
Sbjct: 133 EGRACAVVFDCKFIETSAALHHNVQALFEGVVR 165
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 8/150 (5%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKTS+ + GK + +G + + V L V DT E+
Sbjct: 14 GVGKTSLASLFAGKQ-ERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQE 72
Query: 176 --YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE---PLVLCVVGNKTDLESSREVN 230
+ +A ++V+ I SF + +L+R P++L VGNK DL REV+
Sbjct: 73 SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIIL--VGNKADLARCREVS 130
Query: 231 REEAFHYSKSIGGTYYETSALQDQGIEDVF 260
EE + + ETSA + ++F
Sbjct: 131 VEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 116 GVGKTSMVVRY-IGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
G GKT+++ R +G++ + PTIG + T V +K QVWD GQ R
Sbjct: 12 GAGKTTILYRLQVGEVVTTI--PTIGFNVET----VTYKNLKFQVWDLGGQTSIRPYWRC 65
Query: 175 YYRNANAALLVFDITQYHSFAAIKT-WVKELKRNVDEPLVLCVVGNKTDLESS 226
YY N +A + V D K+ V L+ +L V NK D+E +
Sbjct: 66 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 118
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 17/149 (11%)
Query: 116 GVGKTSMVVRY-IGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
G GKT+++ R IG++ + PTIG + T + +KL VWD GQ R
Sbjct: 28 GAGKTTILYRLQIGEVVTTK--PTIGFNVET----LSYKNLKLNVWDLGGQTSIRPYWRC 81
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEP----LVLCVVGNKTD---LESSR 227
YY + A + V D T + T KEL + E L V NK D S+
Sbjct: 82 YYADTAAVIFVVDSTDKDRMS---TASKELHLMLQEEELQDAALLVFANKQDQPGALSAS 138
Query: 228 EVNREEAFHYSKSIGGTYYETSALQDQGI 256
EV++E K + +SA++ +GI
Sbjct: 139 EVSKELNLVELKDRSWSIVASSAIKGEGI 167
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 116 GVGKTSMVVRY-IGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
G GKT+++ + +G++ + PTIG + T + + VWD GQ+R RS+
Sbjct: 10 GAGKTTVLYKLKLGEVIT--TIPTIGFNVETVQYK----NISFTVWDVGGQDRIRSLWRH 63
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE--PLVLCVVGNKTDLE---SSREV 229
YYRN + V D + V + N DE V NK DL S+ E+
Sbjct: 64 YYRNTEGVIFVVDSNDRSRIGEARE-VMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEI 122
Query: 230 NREEAFH 236
+ H
Sbjct: 123 TEKLGLH 129
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 116 GVGKTSMVVRY-IGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
G GKT+++ + +G++ + PTIG + T + + VWD GQ+R RS+
Sbjct: 27 GAGKTTVLYKLKLGEVIT--TIPTIGFNVETVQYK----NISFTVWDVGGQDRIRSLWRH 80
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE--PLVLCVVGNKTDLE---SSREV 229
YYRN + V D + V + N DE V NK DL S+ E+
Sbjct: 81 YYRNTEGVIFVVDSNDRSRIGEARE-VMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEI 139
Query: 230 NREEAFH 236
+ H
Sbjct: 140 TEKLGLH 146
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 11/150 (7%)
Query: 116 GVGKTSMVVRY-IGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
G GKT+++ R +G++ + PTIG + T V +K QVWD G R
Sbjct: 14 GAGKTTILYRLQVGEVVTTI--PTIGFNVET----VTYKNLKFQVWDLGGLTSIRPYWRC 67
Query: 175 YYRNANAALLVFDITQYHSFAAIKT-WVKELKRNVDEPLVLCVVGNKTDLE---SSREVN 230
YY N +A + V D K+ V L+ +L V NK D+E +S E+
Sbjct: 68 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMA 127
Query: 231 REEAFHYSKSIGGTYYETSALQDQGIEDVF 260
K ++TSA + G+++
Sbjct: 128 NSLGLPALKDRKWQIFKTSATKGTGLDEAM 157
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 11/157 (7%)
Query: 116 GVGKTSMVVRYIGKMFSHHI-SPTIGASFFTAKINV-GENK--VKLQVWDTAGQERFRSM 171
GVGK+++ + G S +G + + V GE+ + L +W+ G+ +
Sbjct: 16 GVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHD 75
Query: 172 APMYYRNANAALLVFDITQYHSF---AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSRE 228
M + +A L+V+ IT SF + ++ ++ ++ D P++L VGNK+DL RE
Sbjct: 76 HCM--QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL--VGNKSDLVRCRE 131
Query: 229 VNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
V+ E + + ETSA ++++F + +
Sbjct: 132 VSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVR 168
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 11/152 (7%)
Query: 116 GVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINV-GENK--VKLQVWDTAGQERFRSM 171
GVGK+++ + G S +G + + V GE+ + L +W+ G+ + +
Sbjct: 47 GVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--L 104
Query: 172 APMYYRNANAALLVFDITQYHSF---AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSRE 228
+ +A L+V+ IT SF + ++ ++ ++ D P++L VGNK+DL RE
Sbjct: 105 HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL--VGNKSDLVRCRE 162
Query: 229 VNREEAFHYSKSIGGTYYETSALQDQGIEDVF 260
V+ E + + ETSA ++++F
Sbjct: 163 VSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 132 SHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQY 191
S HI+ T+G + T + + +V V+D G ++FR + YY N +A + V D + +
Sbjct: 44 SKHITATVGYNVETFE----KGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDH 99
Query: 192 HSFAAIKTWVKELKRNVD 209
+K+ ++ + ++ D
Sbjct: 100 LRLCVVKSEIQAMLKHED 117
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 8/115 (6%)
Query: 118 GKTSMVVRY-IGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
GKTS++ + +G++ + PTIG + T V + VWD GQ++ R + YY
Sbjct: 29 GKTSILYKLKLGEIVT--TIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYY 82
Query: 177 RNANAALLVFDITQYHSFA-AIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVN 230
+N A + V D A + +K L + +L V NK DL + ++
Sbjct: 83 QNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQAMSIS 137
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 20/115 (17%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVK---LQVWDTAGQERFRSMAPM 174
GKT+++ +++ H SPTIG+ NV E VK +WD GQE RS
Sbjct: 28 GKTTILYQFLMNEVVH-TSPTIGS-------NVEEIVVKNTHFLMWDIGGQESLRSSWNT 79
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKR-----NVDEPLVLCVVGNKTDLE 224
YY N +LV D A K +EL R ++ + VL + NK D++
Sbjct: 80 YYSNTEFIILVVDSIDRERLAITK---EELYRMLAHEDLRKAAVL-IFANKQDMK 130
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 5/118 (4%)
Query: 134 HISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHS 193
H SPTIG++ IN + +WD GQE RS YY N ++V D T
Sbjct: 48 HTSPTIGSNVEEIVIN----NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER 103
Query: 194 FAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSA 250
+ + + ++ + D L + NK D++ V F SI + A
Sbjct: 104 ISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQA 161
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 5/118 (4%)
Query: 134 HISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHS 193
H SPTIG++ IN + +WD GQE RS YY N ++V D T
Sbjct: 49 HTSPTIGSNVEEIVIN----NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER 104
Query: 194 FAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSA 250
+ + + ++ + D L + NK D++ V F SI + A
Sbjct: 105 ISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQA 162
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 11/121 (9%)
Query: 134 HISPTIGASFFTAKINVGE---NKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQ 190
H SPTIG+ NV E N + +WD GQE RS YY N ++V D T
Sbjct: 43 HTSPTIGS-------NVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD 95
Query: 191 YHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETS 249
+ + + ++ + D L + NK D++ V F SI +
Sbjct: 96 RERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQ 155
Query: 250 A 250
A
Sbjct: 156 A 156
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 11/121 (9%)
Query: 134 HISPTIGASFFTAKINVGE---NKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQ 190
H SPTIG+ NV E N + +WD GQE RS YY N ++V D T
Sbjct: 43 HTSPTIGS-------NVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD 95
Query: 191 YHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETS 249
+ + + ++ + D L + NK D++ V F SI +
Sbjct: 96 RERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQ 155
Query: 250 A 250
A
Sbjct: 156 A 156
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 157 LQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF---AAIKTWVKELKRNVDEPLV 213
L +W+ G+ + + + +A L+V+ IT SF + ++ ++ ++ D P++
Sbjct: 61 LDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 214 LCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVF 260
L VGNK+DL REV+ E + + ETSA ++++F
Sbjct: 119 L--VGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELF 163
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 157 LQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF---AAIKTWVKELKRNVDEPLV 213
L +W+ G+ + M +A L+V+ IT SF + ++ ++ ++ D P++
Sbjct: 61 LDMWENKGENEWLHDHCMQV--GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 214 LCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVF 260
L VGNK+DL REV+ E + + ETSA ++++F
Sbjct: 119 L--VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 116 GVGKTSMVVRY-IGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
G GKT+++ + +G++ + PTIG F + V + VWD GQ+R RS+
Sbjct: 27 GAGKTTVLYKLKLGEVIT--TIPTIG---FNVEC-VQYCNISFTVWDVGGQDRIRSLWRH 80
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLC-----VVGNKTDLE---SS 226
YY N + V D + V + N DE LC V NK DL S+
Sbjct: 81 YYCNTEGVIFVVDSNDRSRIGEARE-VMQRMLNEDE---LCNAAWLVFANKQDLPEAMSA 136
Query: 227 REVNREEAFH 236
E+ + H
Sbjct: 137 AEITEKLGLH 146
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 20/121 (16%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYR 177
GKT+++ ++ G+ ISPT+G + T + KL +WD GQ+ RS Y+
Sbjct: 30 GKTTILKKFNGEDVDT-ISPTLGFNIKTLE----HRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 178 NANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLV--------LCVVGNKTDLESSREV 229
+ + + V D +A + +++ +R + LV L + NK DL +
Sbjct: 85 STDGLIWVVD-------SADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC 137
Query: 230 N 230
N
Sbjct: 138 N 138
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 20/121 (16%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYR 177
GKT+++ ++ G+ ISPT+G + T + KL +WD GQ+ RS Y+
Sbjct: 28 GKTTILKKFNGEDIDT-ISPTLGFNIKTLE----HRGFKLNIWDVGGQKSLRSYWRNYFE 82
Query: 178 NANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLV--------LCVVGNKTDLESSREV 229
+ + + V D +A + +++ +R + LV L + NK DL +
Sbjct: 83 STDGLIWVVD-------SADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSS 135
Query: 230 N 230
N
Sbjct: 136 N 136
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 20/121 (16%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYR 177
GKT+++ ++ G+ ISPT+G + T + KL +WD GQ+ RS Y+
Sbjct: 30 GKTTILKKFNGEDVDT-ISPTLGFNIKTLE----HRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 178 NANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLV--------LCVVGNKTDLESSREV 229
+ + + V D +A + +++ +R + LV L + NK DL +
Sbjct: 85 STDGLIWVVD-------SADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSX 137
Query: 230 N 230
N
Sbjct: 138 N 138
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 9/146 (6%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
GKT+++ + + SH I+PT G F K +V KL VWD GQ + R Y+
Sbjct: 27 AGKTTLLKQLASEDISH-ITPTQG---FNIK-SVQSQGFKLNVWDIGGQRKIRPYWRSYF 81
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLV-LCVVGNKTDLES---SREVNRE 232
N + + V D F + EL V + + NK DL + + E+
Sbjct: 82 ENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEG 141
Query: 233 EAFHYSKSIGGTYYETSALQDQGIED 258
H + SAL +G++D
Sbjct: 142 LNLHTIRDRVWQIQSCSALTGEGVQD 167
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 9/146 (6%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
GKT+++ + + SH I+PT G F K +V KL VWD GQ + R Y+
Sbjct: 28 AGKTTLLKQLASEDISH-ITPTQG---FNIK-SVQSQGFKLNVWDIGGQRKIRPYWRSYF 82
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLV-LCVVGNKTDLES---SREVNRE 232
N + + V D F + EL V + + NK DL + + E+
Sbjct: 83 ENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEG 142
Query: 233 EAFHYSKSIGGTYYETSALQDQGIED 258
H + SAL +G++D
Sbjct: 143 LNLHTIRDRVWQIQSCSALTGEGVQD 168
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 116 GVGKTSMVVRY-IGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
GKT+++ + +G++ + PTIG + T + + VWD GQ++ R +
Sbjct: 27 AAGKTTILYKVKLGEVVT--TIPTIGFNVETVEFR----NISFTVWDVGGQDKIRPLWRH 80
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEP----LVLCVVGNKTDL 223
YY N + + V D + +EL R ++E ++ V NK DL
Sbjct: 81 YYSNTDGLIFVVDSNDRERIDDAR---EELHRMINEEELKDAIILVFANKQDL 130
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 9/145 (6%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYR 177
GKT+++ + + SH I+PT G F K +V KL VWD GQ + R Y+
Sbjct: 16 GKTTLLKQLASEDISH-ITPTQG---FNIK-SVQSQGFKLNVWDIGGQRKIRPYWRSYFE 70
Query: 178 NANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLV-LCVVGNKTDLES---SREVNREE 233
N + + V D F + EL V + + NK DL + + E+
Sbjct: 71 NTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGL 130
Query: 234 AFHYSKSIGGTYYETSALQDQGIED 258
H + SAL +G++D
Sbjct: 131 NLHTIRDRVWQIQSCSALTGEGVQD 155
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYR 177
GKT+++ ++ G+ ISPT+G + T + KL +WD GQ+ RS Y+
Sbjct: 30 GKTTILKKFNGEDVDT-ISPTLGFNIKTLE----HRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 178 NANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLV--------LCVVGNKTDLESSREV 229
+ + + V D +A + ++ +R + LV L + NK DL +
Sbjct: 85 STDGLIWVVD-------SADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSX 137
Query: 230 N 230
N
Sbjct: 138 N 138
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 14/113 (12%)
Query: 116 GVGKTSMVVRY-IGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
GKT+++ + +G++ + PTIG + T V + VWD GQ++ R +
Sbjct: 30 AAGKTTILYKLKLGEIVT--TIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRH 83
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE----PLVLCVVGNKTDL 223
Y++N + V D + EL R ++E VL V NK DL
Sbjct: 84 YFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDL 133
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 11/148 (7%)
Query: 116 GVGKTSMVVRY-IGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
G GKT+++ R +G++ + PTIG + T V +K QVWD G R
Sbjct: 17 GAGKTTILYRLQVGEVVT--TIPTIGFNVET----VTYKNLKFQVWDLGGLTSIRPYWRC 70
Query: 175 YYRNANAALLVFDITQYHSFAAIKT-WVKELKRNVDEPLVLCVVGNKTDLE---SSREVN 230
YY N +A + V D K+ V L+ +L V NK D E +S E
Sbjct: 71 YYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXTSSEXA 130
Query: 231 REEAFHYSKSIGGTYYETSALQDQGIED 258
K ++TSA + G+++
Sbjct: 131 NSLGLPALKDRKWQIFKTSATKGTGLDE 158
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Query: 116 GVGKTSMVVRYIGKMFSH--HISPTIGASFFTAKINVGENKVK---LQVWDTAGQERFRS 170
G GKT+++ + S S T+G I + + + + L VWD AG+E F S
Sbjct: 12 GSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS 71
Query: 171 MAPMYYRNANAALLVFDITQYHS-FAAIKTWVKELK-RNVDEPLVLCVVGNKTDLESSRE 228
P + L V+D+++ + A K W+ +K R P++L VG D+ ++
Sbjct: 72 THPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL--VGTHLDVSDEKQ 129
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 14/113 (12%)
Query: 116 GVGKTSMVVRY-IGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
GKT+++ + +G++ + PTIG + T V + VWD GQ++ R +
Sbjct: 10 AAGKTTILYKLKLGEIVT--TIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRH 63
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE----PLVLCVVGNKTDL 223
Y++N + V D + +EL R + E VL V NK DL
Sbjct: 64 YFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAEDELRDAVLLVFANKQDL 113
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 24/164 (14%)
Query: 118 GKTSMVVRY-IGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
GKT+++ + +G++ + PTIG + T + + VWD GQ++ R + Y+
Sbjct: 41 GKTTILYKLKLGEIVT--TIPTIGFNVETVEYK----NICFTVWDVGGQDKIRPLWRHYF 94
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDE----PLVLCVVGNKTDLESS---REV 229
+N + V D ++ EL++ + E VL V NK D+ ++ E+
Sbjct: 95 QNTQGLIFVVDSNDRER---VQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSEL 151
Query: 230 NREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQE 273
+ + +S T A Q G+ D GL LS E
Sbjct: 152 TDKLGLQHLRSRTWYVQATCATQGTGLYD-------GLDWLSHE 188
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Query: 116 GVGKTSMVVRYIGKMFSH--HISPTIGASFFTAKINVGENKVK---LQVWDTAGQERFRS 170
G GKT+++ + S S T+G I + + + + L VWD AG+E F S
Sbjct: 10 GSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS 69
Query: 171 MAPMYYRNANAALLVFDITQYHS-FAAIKTWVKELK-RNVDEPLVLCVVGNKTDLESSRE 228
P + L V+D+++ + A K W+ +K R P++L VG D+ ++
Sbjct: 70 THPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL--VGTHLDVSDEKQ 127
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 116 GVGKTSMVVRY-IGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
GKT+++ + +G++ + PTIG + T V + VWD GQ+R R +
Sbjct: 27 AAGKTTILYKLKLGEIVTT--IPTIGFNVET----VEYKNICFTVWDVGGQDRIRPLWKH 80
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRN--VDE--PLVLCVVGNKTDLESSREVN 230
Y++N + V D + EL++ VDE VL + NK DL ++ ++
Sbjct: 81 YFQNTQGLIFVVDSNDRERIQEV---ADELQKMLLVDELRDAVLLLFANKQDLPNAMAIS 137
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 137 PTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAA 196
PT+G + T V VK VWD GQ++ R + YY + V D
Sbjct: 30 PTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 85
Query: 197 IKTWVKELKRNVDE----PLVLCVVGNKTDLESS 226
+ +EL R +++ ++ + NK DL +
Sbjct: 86 AR---QELHRIINDREMRDAIILIFANKQDLPDA 116
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 137 PTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAA 196
PT+G + T V VK VWD GQ++ R + YY + V D
Sbjct: 30 PTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 85
Query: 197 IKTWVKELKRNVDE----PLVLCVVGNKTDLESS 226
+ +EL R +++ ++ + NK DL +
Sbjct: 86 AR---QELHRIINDREMRDAIILIFANKQDLPDA 116
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 132 SHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFD 187
S +I PTIG S K + + V+D +GQ R+R++ YY+ A + V D
Sbjct: 48 SQNILPTIGFSIEKFK----SSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVID 99
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 137 PTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAA 196
PT+G + T V VK VWD GQ++ R + YY + V D
Sbjct: 42 PTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 97
Query: 197 IKTWVKELKRNVDE----PLVLCVVGNKTDL 223
+ +EL R +++ ++ + NK DL
Sbjct: 98 AR---QELHRIINDREMRDAIILIFANKQDL 125
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 116 GVGKTSMVVRY-IGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
GKT+++ + +G++ + PTIG + T V + VWD GQ++ R +
Sbjct: 26 AAGKTTILYKLKLGEIVT--TIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRH 79
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE----PLVLCVVGNKTDLESS 226
Y++N + V D + +EL R + E VL V NK DL ++
Sbjct: 80 YFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAEDELRDAVLLVFANKQDLPNA 132
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 14/113 (12%)
Query: 116 GVGKTSMVVRY-IGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
GKT+++ + +G++ + PTIG + T + + VWD GQ++ R +
Sbjct: 175 AAGKTTILYKLKLGEIVT--TIPTIGFNVETVEYK----NISFTVWDVGGQDKIRPLWRH 228
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE----PLVLCVVGNKTDL 223
Y++N + V D + +EL R + E VL V NK DL
Sbjct: 229 YFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAEDELRDAVLLVFANKQDL 278
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 137 PTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAA 196
PT+G + T V VK VWD GQ++ R + YY + V D
Sbjct: 43 PTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 98
Query: 197 IKTWVKELKRNVDE----PLVLCVVGNKTDL 223
+ +EL R +++ ++ + NK DL
Sbjct: 99 AR---QELHRIINDREMRDAIILIFANKQDL 126
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 116 GVGKTSMVVRY-IGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
GKT+++ + +G++ + PTIG + T V + VWD GQ++ R +
Sbjct: 27 AAGKTTILYKLKLGEIVT--TIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRH 80
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE----PLVLCVVGNKTDLESS 226
Y++N + V D + +EL R + E VL V NK DL ++
Sbjct: 81 YFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAEDELRDAVLLVFANKQDLPNA 133
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 116 GVGKTSMVVRY-IGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
GKT+++ + +G+ + PT+G + T V VK VWD GQ++ R +
Sbjct: 332 AAGKTTILYKLKLGQSVT--TIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRH 385
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE----PLVLCVVGNKTDL 223
YY + V D + +EL R +++ ++ + NK DL
Sbjct: 386 YYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDL 435
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 137 PTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAA 196
PT+G + T V VK VWD GQ++ R + YY + V D
Sbjct: 30 PTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 85
Query: 197 IKTWVKELKRNVDE----PLVLCVVGNKTDL 223
+ +EL R +++ ++ + NK DL
Sbjct: 86 AR---QELHRIINDREXRDAIILIFANKQDL 113
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 12/151 (7%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAK---INVGENKVKLQ-----VWDTAGQERF 168
GKTS++ + IG+ F S T G + T + I EN +L+ WD GQE
Sbjct: 52 AGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIM 111
Query: 169 RSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSRE 228
+ + ++ +L+ D + + W++ +++ + V+ VV NK D S
Sbjct: 112 HASHQFFMTRSSVYMLLLD---SRTDSNKHYWLRHIEKYGGKSPVI-VVMNKIDENPSYN 167
Query: 229 VNREEAFHYSKSIGGTYYETSALQDQGIEDV 259
+ +++ +I ++ S G+E +
Sbjct: 168 IEQKKINERFPAIENRFHRISCKNGDGVESI 198
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 116 GVGKTSMVVRY-IGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
GKT+++ + +G++ + PTIG + T V + VWD G ++ R +
Sbjct: 12 AAGKTTILYKLKLGEIVT--TIPTIGFNVET----VEYKNISFTVWDVGGLDKIRPLWRH 65
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE----PLVLCVVGNKTDL 223
Y++N + V D + +EL R + E VL V NK DL
Sbjct: 66 YFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAEDELRDAVLLVFANKQDL 115
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 137 PTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAA 196
PT+G + T V VK VWD G ++ R + YY + V D
Sbjct: 43 PTVGFNVET----VTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 98
Query: 197 IKTWVKELKRNVDE----PLVLCVVGNKTDLESS 226
+ +EL R +++ ++ + NK DL +
Sbjct: 99 AR---QELHRIINDREMRDAIILIFANKQDLPDA 129
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 137 PTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAA 196
PT+G + T V VK VWD G ++ R + YY + V D
Sbjct: 32 PTVGFNVET----VTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 87
Query: 197 IKTWVKELKRNVDE----PLVLCVVGNKTDLESS 226
+ +EL R +++ ++ + NK DL +
Sbjct: 88 AR---QELHRIINDREMRDAIILIFANKQDLPDA 118
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 137 PTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAA 196
PT+G + T V VK VWD G ++ R + YY + V D
Sbjct: 33 PTVGFNVET----VTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 88
Query: 197 IKTWVKELKRNVDE----PLVLCVVGNKTDLESS 226
+ +EL R +++ ++ + NK DL +
Sbjct: 89 AR---QELHRIINDREMRDAIILIFANKQDLPDA 119
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 155 VKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE---- 210
+ +VWD GQ R Y+ + +A + V D T K EL +DE
Sbjct: 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAK---HELYALLDEDELR 122
Query: 211 PLVLCVVGNKTDL-ESSREVNREEAFHYSKSIGGTY 245
+L + NK DL +++ E E S + T+
Sbjct: 123 KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTW 158
>pdb|2FAF|A Chain A, The Structure Of Chicken Mitochondrial Pepck.
pdb|2FAF|B Chain B, The Structure Of Chicken Mitochondrial Pepck.
pdb|2FAH|A Chain A, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|B Chain B, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|C Chain C, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|D Chain D, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2QZY|A Chain A, The Structure Of Chicken Mitochondrial Pepck In Complex
With Pep
pdb|2QZY|B Chain B, The Structure Of Chicken Mitochondrial Pepck In Complex
With Pep
Length = 608
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
Query: 97 GLSINSRVPNCFEANWF---------WLGVGKTSMVVRYI 127
GL N+R+P F NWF W G G + V+ +I
Sbjct: 487 GLRSNARLPRLFHVNWFLRDNEGRFVWPGFGHNARVLAWI 526
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
Query: 321 GLSINSRVPNCFEANWF---------WLGVGKTSMVVRYI 351
GL N+R+P F NWF W G G + V+ +I
Sbjct: 487 GLRSNARLPRLFHVNWFLRDNEGRFVWPGFGHNARVLAWI 526
>pdb|2JH8|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-capping Production-line
pdb|2JH9|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-Capping Production-Line
pdb|2JHA|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-Capping Production-Line
pdb|2JHC|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-Capping Production-Line
pdb|2JHP|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-Capping Production-Line
Length = 644
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 491 MTHQVDPENPQCIDPNTVV-DMKIFKLDDIVRIEAKNVDLEYAVRDTFATDTAISKFNGV 549
+ H DP P+C DPN +V ++ + DI+ K+++ V F D + +
Sbjct: 219 LWHVYDPIAPECSDPNVIVHNIMVDSKKDIL----KHMNFLKRVERLFIWDVSSDRSQMN 274
Query: 550 IGERELEPWAEDMLG 564
E E +AED LG
Sbjct: 275 DHEWETTRFAEDRLG 289
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,125,694
Number of Sequences: 62578
Number of extensions: 690649
Number of successful extensions: 2057
Number of sequences better than 100.0: 341
Number of HSP's better than 100.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1258
Number of HSP's gapped (non-prelim): 587
length of query: 617
length of database: 14,973,337
effective HSP length: 105
effective length of query: 512
effective length of database: 8,402,647
effective search space: 4302155264
effective search space used: 4302155264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)