BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3029
(617 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17R06|RAB21_BOVIN Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 PE=2 SV=1
Length = 222
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 111/156 (71%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS+V+RY F+ T+ ASF T K+N+G +V L +WDTAGQERF ++ P+YY
Sbjct: 27 VGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYY 86
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R++N A+LV+DIT SF +K WVKEL++ + + LC+VGNK DLE R V+ +EA
Sbjct: 87 RDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKVDLEKERHVSIQEAES 146
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQ 272
Y++S+G +Y TSA Q++GIE++FL++ K +I +Q
Sbjct: 147 YAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQ 182
Score = 39.7 bits (91), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS+V+RY F+ T+ ASF T K+N+G +V L +
Sbjct: 27 VGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAI 69
>sp|Q9UL25|RAB21_HUMAN Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3
Length = 225
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 111/156 (71%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS+V+RY F+ T+ ASF T K+N+G +V L +WDTAGQERF ++ P+YY
Sbjct: 30 VGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYY 89
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R++N A+LV+DIT SF +K WVKEL++ + + LC+VGNK DLE R V+ +EA
Sbjct: 90 RDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAES 149
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQ 272
Y++S+G +Y TSA Q++GIE++FL++ K +I +Q
Sbjct: 150 YAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQ 185
Score = 39.7 bits (91), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS+V+RY F+ T+ ASF T K+N+G +V L +
Sbjct: 30 VGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAI 72
>sp|P55745|RAB21_CANFA Ras-related protein Rab-21 OS=Canis familiaris GN=RAB21 PE=3 SV=3
Length = 223
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 111/156 (71%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS+V+RY F+ T+ ASF T K+N+G +V L +WDTAGQERF ++ P+YY
Sbjct: 28 VGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYY 87
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R++N A+LV+DIT SF +K WVKEL++ + + LC+VGNK DLE R V+ +EA
Sbjct: 88 RDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAES 147
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQ 272
Y++S+G +Y TSA Q++GIE++FL++ K +I +Q
Sbjct: 148 YAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQ 183
Score = 39.7 bits (91), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS+V+RY F+ T+ ASF T K+N+G +V L +
Sbjct: 28 VGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAI 70
>sp|Q6AXT5|RAB21_RAT Ras-related protein Rab-21 OS=Rattus norvegicus GN=Rab21 PE=2 SV=1
Length = 223
Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 111/156 (71%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS+V+RY F+ T+ ASF T K+N+G +V L +WDTAGQERF ++ P+YY
Sbjct: 28 VGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYY 87
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R++N A+LV+D+T SF +K WVKEL++ + + LC+VGNK DLE R V+ +EA
Sbjct: 88 RDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAES 147
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQ 272
Y++S+G +Y TSA Q++GIE++FL++ K +I +Q
Sbjct: 148 YAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQ 183
Score = 39.7 bits (91), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS+V+RY F+ T+ ASF T K+N+G +V L +
Sbjct: 28 VGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAI 70
>sp|P35282|RAB21_MOUSE Ras-related protein Rab-21 OS=Mus musculus GN=Rab21 PE=1 SV=4
Length = 222
Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 111/156 (71%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS+V+RY F+ T+ ASF T K+N+G +V L +WDTAGQERF ++ P+YY
Sbjct: 28 VGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYY 87
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R++N A+LV+D+T SF +K WVKEL++ + + LC+VGNK DLE R V+ +EA
Sbjct: 88 RDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAES 147
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQ 272
Y++S+G +Y TSA Q++GIE++FL++ K +I +Q
Sbjct: 148 YAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQ 183
Score = 39.7 bits (91), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS+V+RY F+ T+ ASF T K+N+G +V L +
Sbjct: 28 VGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAI 70
>sp|Q8MYF2|RABJ_DICDI Ras-related protein RabJ OS=Dictyostelium discoideum GN=rabJ PE=3
SV=1
Length = 256
Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 74/152 (48%), Positives = 106/152 (69%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKT++ +RY+ +F ++ TIGASF T IN+ NK+K +WD+AGQ+RFRS+A +YY
Sbjct: 20 VGKTALSLRYVDGIFPKRLTSTIGASFLTRTINIEGNKIKYLIWDSAGQDRFRSLATLYY 79
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R A A+LVFDITQ +F +K WV+ELK N+ E +++ + GNK DLE +R+V E A
Sbjct: 80 RGACVAILVFDITQQKTFDIVKGWVEELKANIQEEIIMVLCGNKIDLEQNRQVKSETAKL 139
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
Y+ I Y ETSA +++G+E +FL + K LI
Sbjct: 140 YADEINAMYVETSAKENEGVEGMFLEIGKKLI 171
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVK 380
VGKT++ +RY+ +F ++ TIGASF T IN+ NK+K
Sbjct: 20 VGKTALSLRYVDGIFPKRLTSTIGASFLTRTINIEGNKIK 59
>sp|Q13636|RAB31_HUMAN Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1
Length = 194
Score = 155 bits (393), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 102/152 (67%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S+V R++ F H+ISPTIGASF T + G K +WDTAGQERF S+APMY
Sbjct: 15 GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMY 74
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR + AA++V+DIT+ SF +K WVKELK + E +V+ + GNK DL REV ++A
Sbjct: 75 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAK 134
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y++SIG ETSA IE++F +S+ +
Sbjct: 135 EYAESIGAIVVETSAKNAINIEELFQGISRQI 166
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG 375
GVGK+S+V R++ F H+ISPTIGASF T + G
Sbjct: 15 GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCG 50
>sp|Q921E2|RAB31_MOUSE Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1
Length = 194
Score = 155 bits (392), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 101/150 (67%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S+V R++ F H+ISPTIGASF T + G K +WDTAGQERF S+APMY
Sbjct: 15 GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMY 74
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR + AA++V+DIT+ SF +K WVKELK + E +V+ + GNK DL REV ++A
Sbjct: 75 YRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAK 134
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
Y++SIG ETSA IE++F +S+
Sbjct: 135 EYAESIGAIVVETSAKNAINIEELFQGISR 164
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG 375
GVGK+S+V R++ F H+ISPTIGASF T + G
Sbjct: 15 GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCG 50
>sp|Q6GQP4|RAB31_RAT Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=1 SV=2
Length = 194
Score = 155 bits (392), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 101/150 (67%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S+V R++ F H+ISPTIGASF T + G K +WDTAGQERF S+APMY
Sbjct: 15 GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMY 74
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR + AA++V+DIT+ SF +K WVKELK + E +V+ + GNK DL REV ++A
Sbjct: 75 YRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAK 134
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
Y++SIG ETSA IE++F +S+
Sbjct: 135 EYAESIGALVVETSAKNAINIEELFQGISR 164
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG 375
GVGK+S+V R++ F H+ISPTIGASF T + G
Sbjct: 15 GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCG 50
>sp|Q8WQ53|RAB21_GEOCY Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1
Length = 229
Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 107/153 (69%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKTS+V+RY F+ T+ ASF ++N+G +++L +WDTAGQER+ ++ P+Y
Sbjct: 26 AVGKTSLVLRYSENKFNDKHEQTLQASFVEKRLNIGGKRIQLAIWDTAGQERYHALGPIY 85
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR++ A++V+DIT SF + W+KELKR + + + LC+VGNK DL+ R V+ ++A
Sbjct: 86 YRDSQGAIIVYDITDEDSFHKARNWIKELKRMLGDKVTLCIVGNKIDLDRQRTVSEKDAL 145
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
Y++S+G +Y TSA Q +G+ ++FL+++K ++
Sbjct: 146 EYAESVGAKHYYTSAKQSKGVAELFLDLAKRIL 178
Score = 37.0 bits (84), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS+V+RY F+ T+ ASF ++N+G +++L +
Sbjct: 26 AVGKTSLVLRYSENKFNDKHEQTLQASFVEKRLNIGGKRIQLAI 69
>sp|P34142|RAB21_DICDI Ras-related protein Rab-21 OS=Dictyostelium discoideum GN=rab21
PE=1 SV=2
Length = 212
Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 102/152 (67%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS+V RYI +F+ T A FF IN+G ++ L +WDTAGQERF ++ P+YY
Sbjct: 18 VGKTSIVFRYIDNIFNDKHLMTQHAGFFQKHINIGGKRICLTIWDTAGQERFHALGPIYY 77
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH 236
R + AL+V+DIT SF K W+KELK + + LC++GNK DLE +R + +A
Sbjct: 78 RGSQGALVVYDITDNDSFIKAKNWIKELKTMLGNDISLCIIGNKCDLEKTRVIPLADAEA 137
Query: 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
Y+KS+G +Y TSA ++GIE++FL++++ +I
Sbjct: 138 YAKSVGAIHYSTSAKLNKGIEELFLDLTRRMI 169
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS+V RYI +F+ T A FF IN+G ++ L +
Sbjct: 18 VGKTSIVFRYIDNIFNDKHLMTQHAGFFQKHINIGGKRICLTI 60
>sp|P36017|VPS21_YEAST Vacuolar protein sorting-associated protein 21 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS21 PE=1
SV=1
Length = 210
Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 109/167 (65%), Gaps = 3/167 (1%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F+ + PTIGA+F T ++ + E+ VK ++WDTAGQERF S+APMY
Sbjct: 17 AVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMY 76
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDL---ESSREVNRE 232
YRNA AAL+V+D+T+ SF + WVKEL + +++ +VGNK D+ R+V RE
Sbjct: 77 YRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVARE 136
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQESLHTSS 279
E ++ G ++ETSA + + DVFL + + + + E +++S
Sbjct: 137 EGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLKTAEEQNSAS 183
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F+ + PTIGA+F T ++ + E+ VK ++
Sbjct: 17 AVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEI 60
>sp|Q5ZHW4|RAB5B_CHICK Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1
Length = 215
Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 97/152 (63%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F + TIGA+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 30 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMY 89
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT +FA KTWVKEL+R +V+ + GNK DL S R V EEA
Sbjct: 90 YRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLASKRMVEYEEAQ 149
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + D+FL ++K L
Sbjct: 150 AYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 181
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F + TIGA+F T + + + VK ++
Sbjct: 30 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 73
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1
Length = 200
Score = 145 bits (367), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 100/153 (65%)
Query: 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
+G GK+S+V+R++ F TIGA+FF++ ++V VK ++WDTAGQER+ S+APM
Sbjct: 19 MGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVKFEIWDTAGQERYHSLAPM 78
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEA 234
YYR A AA++V+DIT S A K WV+EL++ + +V+ + GNK DLE R+V EEA
Sbjct: 79 YYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKADLEDKRKVTAEEA 138
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y++ G + ETSA + D+F ++K L
Sbjct: 139 RLYAEENGLFFMETSAKTATNVNDIFYEIAKRL 171
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 339 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
+G GK+S+V+R++ F TIGA+FF++ ++V VK ++
Sbjct: 19 MGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVKFEI 63
>sp|Q5RBG1|RAB5B_PONAB Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1
Length = 215
Score = 145 bits (366), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 97/152 (63%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F + TIGA+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 30 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMY 89
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT +FA KTWVKEL+R +V+ + GNK DL + R V EEA
Sbjct: 90 YRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQ 149
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + D+FL ++K L
Sbjct: 150 AYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 181
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F + TIGA+F T + + + VK ++
Sbjct: 30 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 73
>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1
Length = 215
Score = 145 bits (366), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 97/152 (63%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F + TIGA+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 30 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMY 89
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT +FA KTWVKEL+R +V+ + GNK DL + R V EEA
Sbjct: 90 YRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQ 149
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + D+FL ++K L
Sbjct: 150 AYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 181
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F + TIGA+F T + + + VK ++
Sbjct: 30 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 73
>sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1
Length = 215
Score = 145 bits (366), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 97/152 (63%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F + TIGA+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 30 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMY 89
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT +FA KTWVKEL+R +V+ + GNK DL + R V EEA
Sbjct: 90 YRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQ 149
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + D+FL ++K L
Sbjct: 150 AYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 181
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F + TIGA+F T + + + VK ++
Sbjct: 30 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 73
>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2
SV=1
Length = 200
Score = 142 bits (358), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 99/153 (64%)
Query: 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
+G GK+S+V+R++ F TIGA+FF++ + V VK ++WDTAGQER+ S+APM
Sbjct: 19 MGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQERYHSLAPM 78
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEA 234
YYR A AA++V+DIT SFA K WV+EL++ + +V+ + GNK DLE R+V EEA
Sbjct: 79 YYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRRKVTAEEA 138
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y++ G + ETSA + +F ++K L
Sbjct: 139 RLYAEENGLFFMETSAKTAVNVNAIFYEIAKRL 171
Score = 39.7 bits (91), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 339 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
+G GK+S+V+R++ F TIGA+FF++ + V VK ++
Sbjct: 19 MGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEI 63
>sp|P35285|RB22A_MOUSE Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2
Length = 194
Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 99/150 (66%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S+V R++ F +I+PTIGASF T + K +WDTAGQERFR++APMY
Sbjct: 15 GVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMY 74
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR + AA++V+DIT+ +F+ +K WV+EL+++ +V+ + GNK DL REV +A
Sbjct: 75 YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAK 134
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
Y+ SI + ETSA I ++F+ +S+
Sbjct: 135 DYADSIHAIFVETSAKNAININELFIEISR 164
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKIN 373
GVGK+S+V R++ F +I+PTIGASF T +
Sbjct: 15 GVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQ 48
>sp|Q9UL26|RB22A_HUMAN Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2
Length = 194
Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 99/150 (66%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S+V R++ F +I+PTIGASF T + K +WDTAGQERFR++APMY
Sbjct: 15 GVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMY 74
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR + AA++V+DIT+ +F+ +K WVKEL+++ +V+ + GNK DL REV +A
Sbjct: 75 YRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAK 134
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
Y+ SI + ETSA I ++F+ +S+
Sbjct: 135 DYADSIHAIFVETSAKNAININELFIEISR 164
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKI 372
GVGK+S+V R++ F +I+PTIGASF T +
Sbjct: 15 GVGKSSIVWRFVEDSFDPNINPTIGASFMTKTV 47
>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1
Length = 216
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 97/152 (63%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F + TIGA+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 31 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 90
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT +FA K WVKEL+R +V+ + GNK DL S R V +EA
Sbjct: 91 YRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQ 150
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y++ + ETSA + ++F+ ++K L
Sbjct: 151 AYAEDNSLLFMETSAKTAMNVNEIFMAIAKKL 182
Score = 37.0 bits (84), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F + TIGA+F T + + + VK ++
Sbjct: 31 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEI 74
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1
Length = 216
Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 96/152 (63%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F + TIGA+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 31 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 90
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT +FA K WVKEL+R +V+ + GNK DL S R V +EA
Sbjct: 91 YRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQ 150
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 151 AYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182
Score = 37.0 bits (84), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F + TIGA+F T + + + VK ++
Sbjct: 31 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEI 74
>sp|Q0IIG7|RAB5A_BOVIN Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1
Length = 215
Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 96/152 (63%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F TIGA+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 30 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 89
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT SFA K WVKEL+R +V+ + GNK DL + R V+ +EA
Sbjct: 90 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQ 149
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 150 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F TIGA+F T + + + VK ++
Sbjct: 30 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73
>sp|Q5R7L7|RAB5C_PONAB Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1
Length = 216
Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 96/152 (63%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F + TIGA+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 31 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 90
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT +FA K WVKEL+R +V+ + GNK DL S R V +EA
Sbjct: 91 YRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQ 150
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 151 AYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182
Score = 37.0 bits (84), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F + TIGA+F T + + + VK ++
Sbjct: 31 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEI 74
>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2
Length = 216
Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 96/152 (63%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F + TIGA+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 31 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 90
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT +FA K WVKEL+R +V+ + GNK DL S R V +EA
Sbjct: 91 YRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQ 150
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 151 AYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182
Score = 37.0 bits (84), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F + TIGA+F T + + + VK ++
Sbjct: 31 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEI 74
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2
Length = 216
Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 96/152 (63%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F + TIGA+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 31 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 90
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT +FA K WVKEL+R +V+ + GNK DL S R V +EA
Sbjct: 91 YRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQ 150
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 151 AYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182
Score = 37.0 bits (84), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F + TIGA+F T + + + VK ++
Sbjct: 31 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEI 74
>sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2
SV=1
Length = 215
Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 96/152 (63%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F TIGA+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 30 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 89
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT SFA K WVKEL+R +V+ + GNK DL + R V+ +EA
Sbjct: 90 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQ 149
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 150 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F TIGA+F T + + + VK ++
Sbjct: 30 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2
Length = 215
Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 96/152 (63%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F TIGA+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 30 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 89
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT SFA K WVKEL+R +V+ + GNK DL + R V+ +EA
Sbjct: 90 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQ 149
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 150 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F TIGA+F T + + + VK ++
Sbjct: 30 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1
Length = 215
Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 96/152 (63%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F TIGA+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 30 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 89
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT SFA K WVKEL+R +V+ + GNK DL + R V+ +EA
Sbjct: 90 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQ 149
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 150 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F TIGA+F T + + + VK ++
Sbjct: 30 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73
>sp|Q06AU6|RAB5A_PIG Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1
Length = 215
Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 96/152 (63%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F TIGA+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 30 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 89
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT SFA K WVKEL+R +V+ + GNK DL + R V+ +EA
Sbjct: 90 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQ 149
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 150 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181
Score = 36.2 bits (82), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F TIGA+F T + + + VK ++
Sbjct: 30 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1
Length = 215
Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 96/152 (63%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F TIGA+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 30 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 89
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT SFA K WVKEL+R +V+ + GNK DL + R V+ +EA
Sbjct: 90 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQ 149
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 150 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181
Score = 36.2 bits (82), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F TIGA+F T + + + VK ++
Sbjct: 30 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73
>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1
SV=1
Length = 200
Score = 139 bits (351), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 99/153 (64%)
Query: 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
+G GK+S+V+R++ F TIGA+FF+ + V + VK ++WDTAGQER+ S+APM
Sbjct: 19 VGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM 78
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEA 234
YYR A AA++VFDIT SF K WV+EL+ + +V+ + GNK DL +R+V+ EEA
Sbjct: 79 YYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVSAEEA 138
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y++ + ETSA ++D+F ++K L
Sbjct: 139 EIYAQENSLFFMETSAKTATNVKDIFYEIAKRL 171
Score = 39.3 bits (90), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 339 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
+G GK+S+V+R++ F TIGA+FF+ + V + VK ++
Sbjct: 19 VGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEI 63
>sp|P51154|RB22A_CANFA Ras-related protein Rab-22A OS=Canis familiaris GN=RAB22A PE=1 SV=1
Length = 194
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 98/150 (65%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S+V R++ F +I+PTIGASF T + K +WDTAGQE FR++APMY
Sbjct: 15 GVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQEAFRALAPMY 74
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR + AA++V+DIT+ +F+ +K WVKEL+++ +V+ + GNK DL REV +A
Sbjct: 75 YRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAK 134
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
Y+ SI + ETSA I ++F+ +S+
Sbjct: 135 DYADSIHAIFVETSAKNAININELFIEISR 164
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKI 372
GVGK+S+V R++ F +I+PTIGASF T +
Sbjct: 15 GVGKSSIVWRFVEDSFDPNINPTIGASFMTKTV 47
>sp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1
SV=1
Length = 200
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 100/153 (65%)
Query: 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
+G GK+S+V+R++ F TIGA+FF+ + V + VK ++WDTAGQER+ S+APM
Sbjct: 19 VGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM 78
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEA 234
YYR A AA++VFD+T SF K WV+EL+ + +V+ + GNK+DL +R+V E+A
Sbjct: 79 YYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDA 138
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y++ G + ETSA ++++F +++ L
Sbjct: 139 QTYAQENGLFFMETSAKTATNVKEIFYEIARRL 171
Score = 39.3 bits (90), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 339 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
+G GK+S+V+R++ F TIGA+FF+ + V + VK ++
Sbjct: 19 VGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEI 63
>sp|P36586|YPT5_SCHPO GTP-binding protein ypt5 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt5 PE=1 SV=1
Length = 211
Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 113/180 (62%), Gaps = 4/180 (2%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGEN-KVKLQVWDTAGQERFRSMAPM 174
VGK+S+V+R++ F + TIGA+F T + + EN VKL++WDTAGQER++S+APM
Sbjct: 24 AVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPM 83
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDL-ESSREVNREE 233
YYRNAN A++V+DITQ S K+W+KEL+R E +V+ + GNK DL + R V + +
Sbjct: 84 YYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQERRAVEKAD 143
Query: 234 AFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQESLHTSSLRVYDSDNITSANP 293
A Y+ ++ETSA + + ++F ++K L ++ L+ + V N++ A P
Sbjct: 144 AEAYAAEANLLFFETSAKTAENVNELFTAIAKKLPL--EDKLNQARGAVNRGVNLSEARP 201
Score = 39.7 bits (91), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGEN-KVKLQL 383
VGK+S+V+R++ F + TIGA+F T + + EN VKL++
Sbjct: 24 AVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEI 68
>sp|Q98932|RAB5C_CHICK Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1
Length = 216
Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 96/152 (63%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F + TIGA+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 31 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 90
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT +F K WVKEL+R +V+ + GNK DL + R V+ ++A
Sbjct: 91 YRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVIALAGNKADLATKRAVDFQDAQ 150
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 151 TYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182
Score = 37.0 bits (84), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F + TIGA+F T + + + VK ++
Sbjct: 31 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEI 74
>sp|Q99260|YPT6_YEAST GTP-binding protein YPT6 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT6 PE=1 SV=1
Length = 215
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 111/189 (58%), Gaps = 9/189 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKTS++ R++ F H TIG F + + + + ++LQ+WDTAGQERFRS+ P Y
Sbjct: 20 GVGKTSLITRFMYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSY 79
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELK-RNVDEPLVLCVVGNKTDLESSREVNREEA 234
R++ A++V+DIT+ SF I W++++K DE ++LC+VGNK+DL R+++ EE
Sbjct: 80 IRDSRVAIIVYDITKRKSFEYIDKWIEDVKNERGDENVILCIVGNKSDLSDERQISTEEG 139
Query: 235 FHYSKSIGGT-YYETSALQDQGIEDVFLNVSKGLICLSQESLHTSSLRVYDSDNITSANP 293
+K +G + ETS ++ +F ++K L S DS+N SAN
Sbjct: 140 EKKAKLLGAKIFMETSTKAGYNVKALFKKIAKSL-----PEFQNSESTPLDSENANSANQ 194
Query: 294 R--GVVEIT 300
GV++I+
Sbjct: 195 NKPGVIDIS 203
Score = 40.4 bits (93), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKTS++ R++ F H TIG F + + + + ++LQL
Sbjct: 20 GVGKTSLITRFMYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQL 63
>sp|Q9WTL2|RAB25_MOUSE Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2
Length = 213
Score = 133 bits (335), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 96/150 (64%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKT+++ R+ FSH TIG F T + +G VK Q+WDTAG ER+R++ Y
Sbjct: 22 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAY 81
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLVFD+T++ ++A ++ W+KEL + + +V+ +VGNK+DL +REV EEA
Sbjct: 82 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEAC 141
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++++ G + ETSAL +E F V K
Sbjct: 142 MFAENNGLLFLETSALDSTNVELAFQTVLK 171
Score = 37.0 bits (84), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKT+++ R+ FSH TIG F T + +G VK Q+
Sbjct: 22 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 65
>sp|P41925|RYL2_YARLI Ras-like GTP-binding protein RYL2 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RYL2 PE=3 SV=2
Length = 209
Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 94/152 (61%), Gaps = 7/152 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKT V RY+ F + TIGASF ++ V + V+LQ+WDTAGQERFRSMAP+Y
Sbjct: 15 GVGKTCFVTRYVNNKFQAGQASTIGASFSRKRVVVNDTTVRLQIWDTAGQERFRSMAPIY 74
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDL----ESSREVNR 231
YR+A+ +L +D+T SF A+ W+ ELK+N+ +++ +VG K DL S REV
Sbjct: 75 YRSASCGILCYDVTSRASFDAMHLWLLELKQNLSSDIIIHIVGTKVDLVKDEPSLREVPF 134
Query: 232 EEAFHYSKSI---GGTYYETSALQDQGIEDVF 260
E+ Y+ +E SA D+G+E+VF
Sbjct: 135 EQCVEYASEWLQDDSCCHEISAKDDEGVEEVF 166
Score = 41.2 bits (95), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKT V RY+ F + TIGASF ++ V + V+LQ+
Sbjct: 15 GVGKTCFVTRYVNNKFQAGQASTIGASFSRKRVVVNDTTVRLQI 58
>sp|Q58DW6|RAB25_BOVIN Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1
Length = 213
Score = 132 bits (333), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 96/150 (64%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKT+++ R+ FSH TIG F T + +G +K Q+WDTAG ER+R++ Y
Sbjct: 22 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAY 81
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLVFD+T++ ++A ++ W+KEL + + +V+ +VGNK+DL SREV EEA
Sbjct: 82 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEAR 141
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++++ G + ETSAL +E F V K
Sbjct: 142 MFAENNGLLFLETSALDSTNVELAFETVLK 171
Score = 36.2 bits (82), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKT+++ R+ FSH TIG F T + +G +K Q+
Sbjct: 22 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQI 65
>sp|Q86JP3|RAB5A_DICDI Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A
PE=3 SV=1
Length = 201
Score = 132 bits (333), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 95/152 (62%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F + TIGA+F + + + VK ++WDTAGQER+ ++APMY
Sbjct: 19 AVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLNDTTVKFEIWDTAGQERYHTLAPMY 78
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DI SF WVKEL+R +V+ + GNK DL + R+V EA
Sbjct: 79 YRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALAGNKLDLAAKRKVETAEAQ 138
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y++ G + ETSA Q + ++F+ ++K L
Sbjct: 139 QYAEENGLLFMETSAKTSQNVNELFVEIAKKL 170
>sp|P57735|RAB25_HUMAN Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2
Length = 213
Score = 132 bits (332), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 96/150 (64%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKT+++ R+ FSH TIG F T + +G VK Q+WDTAG ER+R++ Y
Sbjct: 22 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAY 81
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLVFD+T++ ++A ++ W+KEL + + +V+ +VGNK+DL +REV EEA
Sbjct: 82 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEAR 141
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++++ G + ETSAL +E F V K
Sbjct: 142 MFAENNGLLFLETSALDSTNVELAFETVLK 171
Score = 37.0 bits (84), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKT+++ R+ FSH TIG F T + +G VK Q+
Sbjct: 22 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 65
>sp|E2RQ15|RAB25_CANFA Ras-related protein Rab-25 OS=Canis familiaris GN=RAB25 PE=3 SV=1
Length = 213
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 96/150 (64%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKT+++ R+ FSH TIG F T + +G +K Q+WDTAG ER+R++ Y
Sbjct: 22 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAY 81
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLVFD+T++ ++A ++ W+KEL + + +V+ +VGNK+DL +REV EEA
Sbjct: 82 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLHQAREVPTEEAR 141
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++++ G + ETSAL +E F V K
Sbjct: 142 MFAENNGLLFLETSALDSTNVELAFETVLK 171
Score = 36.6 bits (83), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKT+++ R+ FSH TIG F T + +G +K Q+
Sbjct: 22 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQI 65
>sp|P46629|RAB25_RABIT Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2
SV=1
Length = 213
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 100/163 (61%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKT+++ R+ FSH TIG F T + +G VK Q+WDTAG ER+R++ Y
Sbjct: 22 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAY 81
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLVFD+T++ ++A ++ W+KEL + + +V+ +VGNK+DL +REV EEA
Sbjct: 82 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEAR 141
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQESLHTS 278
++++ G + ETSAL +E F V K + + + S
Sbjct: 142 MFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQIQNS 184
Score = 36.2 bits (82), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKT+++ R+ FSH TIG F T + +G VK Q+
Sbjct: 22 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQI 65
>sp|Q923S9|RAB30_MOUSE Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1
Length = 203
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 94/153 (61%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKT +V R+ +F TIG F + + KVKLQ+WDTAGQERFRS+ Y
Sbjct: 19 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSY 78
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR+ANA +L +DIT SF + W++E+++ ++ +VGNK DL REV+++ A
Sbjct: 79 YRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAE 138
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
+S++ Y ETSA + +E +FL+++ LI
Sbjct: 139 EFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 171
Score = 36.2 bits (82), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKT +V R+ +F TIG F + + KVKLQ+
Sbjct: 19 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 62
>sp|Q15771|RAB30_HUMAN Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2
Length = 203
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 94/153 (61%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKT +V R+ +F TIG F + + KVKLQ+WDTAGQERFRS+ Y
Sbjct: 19 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSY 78
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR+ANA +L +DIT SF + W++E+++ ++ +VGNK DL REV+++ A
Sbjct: 79 YRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAE 138
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
+S++ Y ETSA + +E +FL+++ LI
Sbjct: 139 EFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 171
Score = 36.2 bits (82), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKT +V R+ +F TIG F + + KVKLQ+
Sbjct: 19 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 62
>sp|Q17QB7|RAB30_BOVIN Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1
Length = 203
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 94/153 (61%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKT +V R+ +F TIG F + + KVKLQ+WDTAGQERFRS+ Y
Sbjct: 19 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSY 78
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR+ANA +L +DIT SF + W++E+++ ++ +VGNK DL REV+++ A
Sbjct: 79 YRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAE 138
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
+S++ Y ETSA + +E +FL+++ LI
Sbjct: 139 EFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 171
Score = 36.2 bits (82), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKT +V R+ +F TIG F + + KVKLQ+
Sbjct: 19 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 62
>sp|P36018|YPT52_YEAST GTP-binding protein YPT52 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT52 PE=1 SV=1
Length = 234
Score = 129 bits (323), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 108/194 (55%), Gaps = 29/194 (14%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENK--------VKLQVWDTAGQERF 168
VGK+S+V R++ F TIGA+F + I + N +K ++WDTAGQER+
Sbjct: 14 VGKSSIVHRFVKDTFDELRESTIGAAFLSQSITIHPNDGNETKDVVIKFEIWDTAGQERY 73
Query: 169 RSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDL---- 223
+S+APMYYRNANAAL+V+DITQ S + WV ELK V D+ LV+ ++GNK DL
Sbjct: 74 KSLAPMYYRNANAALVVYDITQEDSLQKARNWVDELKNKVGDDDLVIYLLGNKVDLCQET 133
Query: 224 ----------------ESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
+ R ++ EEA Y++ G + E SA +G++++F ++ + L
Sbjct: 134 PSTETSPDSNEGGDEEQKVRAISTEEAKQYAQEQGLLFREVSAKTGEGVKEIFQDIGEKL 193
Query: 268 ICLSQESLHTSSLR 281
L ++ + + R
Sbjct: 194 YDLKKDEILSKQNR 207
>sp|Q9H0T7|RAB17_HUMAN Ras-related protein Rab-17 OS=Homo sapiens GN=RAB17 PE=1 SV=2
Length = 212
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 101/158 (63%), Gaps = 2/158 (1%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGK+S+ +RY+ F I PT+G +FFT ++VG +KL++WDTAGQE++ S+ +Y+
Sbjct: 30 VGKSSLALRYVKNDFKS-ILPTVGCAFFTKVVDVGATSLKLEIWDTAGQEKYHSVCHLYF 88
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLC-VVGNKTDLESSREVNREEAF 235
R ANAALLV+DIT+ SF + W+K+L+ + VL +VGNKTDL REV +E
Sbjct: 89 RGANAALLVYDITRKDSFLKAQQWLKDLEEELHPGEVLVMLVGNKTDLSQEREVTFQEGK 148
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQE 273
++ S + ETSA + + +VF V++ L+ S E
Sbjct: 149 EFADSQKLLFMETSAKLNHQVSEVFNTVAQELLQRSDE 186
Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+ +RY+ F I PT+G +FFT ++VG +KL++
Sbjct: 30 VGKSSLALRYVKNDFKS-ILPTVGCAFFTKVVDVGATSLKLEI 71
>sp|P35292|RAB17_MOUSE Ras-related protein Rab-17 OS=Mus musculus GN=Rab17 PE=1 SV=1
Length = 214
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 114/174 (65%), Gaps = 5/174 (2%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKTS+ +RY+ + FS+ + PT+G +FFT +++G + +KL++WDTAGQE+++S+ +Y+
Sbjct: 30 VGKTSLALRYMKQDFSN-VLPTVGCAFFTKVLDLGSSSLKLEIWDTAGQEKYQSVCHLYF 88
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDE-PLVLCVVGNKTDLESSREVNREEAF 235
R ANAALLV+DIT+ SF + W+++L++ +V+ +VGNKTDL REV +E
Sbjct: 89 RGANAALLVYDITRKDSFHKAQQWLEDLEKEFQPGEVVVMLVGNKTDLGEEREVTFQEGK 148
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQESLHTSSLRVYDSDNIT 289
+++S + ETSA + + ++F V++ L+ Q + T S R + + +
Sbjct: 149 EFAESKSLLFMETSAKLNYQVSEIFNTVAQELL---QRAGDTGSSRPQEGEAVA 199
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 341 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS+ +RY+ + FS+ + PT+G +FFT +++G + +KL++
Sbjct: 30 VGKTSLALRYMKQDFSN-VLPTVGCAFFTKVLDLGSSSLKLEI 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,685,096
Number of Sequences: 539616
Number of extensions: 9366288
Number of successful extensions: 27074
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 245
Number of HSP's that attempted gapping in prelim test: 24683
Number of HSP's gapped (non-prelim): 1908
length of query: 617
length of database: 191,569,459
effective HSP length: 124
effective length of query: 493
effective length of database: 124,657,075
effective search space: 61455937975
effective search space used: 61455937975
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)