Query psy3029
Match_columns 617
No_of_seqs 770 out of 3764
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 23:41:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3029.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3029hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 4.6E-34 9.9E-39 267.7 18.3 167 83-271 8-175 (205)
2 KOG0092|consensus 100.0 8.9E-33 1.9E-37 258.1 17.8 168 82-271 3-170 (200)
3 KOG0098|consensus 100.0 2E-32 4.3E-37 253.3 19.1 172 82-275 4-175 (216)
4 KOG0078|consensus 100.0 5.1E-32 1.1E-36 257.8 19.0 167 83-271 11-177 (207)
5 KOG0094|consensus 100.0 5.3E-32 1.2E-36 252.5 17.1 165 84-270 22-187 (221)
6 KOG0080|consensus 100.0 8.9E-31 1.9E-35 236.2 15.7 166 83-270 10-176 (209)
7 cd04120 Rab12 Rab12 subfamily. 100.0 2.2E-29 4.8E-34 247.5 22.0 156 115-270 9-165 (202)
8 cd04121 Rab40 Rab40 subfamily. 100.0 3.4E-29 7.3E-34 243.8 22.6 164 84-270 6-169 (189)
9 KOG0394|consensus 100.0 5.9E-30 1.3E-34 236.6 15.5 166 84-271 9-181 (210)
10 KOG0087|consensus 100.0 1.4E-29 2.9E-34 239.9 17.4 168 83-272 13-180 (222)
11 KOG0093|consensus 100.0 1.3E-29 2.9E-34 225.3 15.6 167 85-273 22-188 (193)
12 KOG0086|consensus 100.0 1.5E-29 3.2E-34 226.2 15.4 161 115-275 18-178 (214)
13 KOG0079|consensus 100.0 8.8E-30 1.9E-34 226.6 12.7 156 115-271 17-172 (198)
14 cd04133 Rop_like Rop subfamily 100.0 1.8E-28 3.9E-33 236.0 20.9 159 85-267 2-172 (176)
15 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.8E-28 3.8E-33 237.4 20.3 162 83-268 4-180 (182)
16 cd04122 Rab14 Rab14 subfamily. 100.0 4E-28 8.7E-33 230.7 21.9 154 115-268 11-164 (166)
17 KOG0091|consensus 100.0 6.6E-29 1.4E-33 224.7 14.0 168 85-274 9-179 (213)
18 cd04131 Rnd Rnd subfamily. Th 100.0 4.2E-28 9.1E-33 234.0 20.4 160 84-267 1-175 (178)
19 KOG0088|consensus 100.0 5.6E-29 1.2E-33 223.8 11.9 168 82-271 11-178 (218)
20 KOG0097|consensus 100.0 5.8E-28 1.3E-32 213.3 17.7 169 84-274 11-179 (215)
21 cd04117 Rab15 Rab15 subfamily. 100.0 1.2E-27 2.6E-32 226.6 21.0 152 115-266 9-160 (161)
22 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.7E-27 3.6E-32 238.5 22.9 163 84-270 13-190 (232)
23 cd01865 Rab3 Rab3 subfamily. 100.0 1.8E-27 3.8E-32 226.2 21.5 154 115-268 10-163 (165)
24 cd01867 Rab8_Rab10_Rab13_like 100.0 2E-27 4.4E-32 226.2 21.7 155 115-269 12-166 (167)
25 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.7E-27 3.7E-32 228.4 21.1 164 84-270 2-166 (172)
26 KOG0095|consensus 100.0 4E-28 8.6E-33 216.3 15.0 165 85-271 8-172 (213)
27 cd04128 Spg1 Spg1p. Spg1p (se 100.0 2.1E-27 4.6E-32 230.0 21.1 154 115-269 9-167 (182)
28 PF00071 Ras: Ras family; Int 100.0 3.1E-27 6.8E-32 223.0 21.2 154 115-268 8-161 (162)
29 cd04119 RJL RJL (RabJ-Like) su 100.0 2.8E-27 6.1E-32 223.7 20.9 154 115-268 9-167 (168)
30 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3.2E-27 6.9E-32 232.2 21.9 156 115-270 9-170 (201)
31 cd01875 RhoG RhoG subfamily. 100.0 3E-27 6.5E-32 230.6 21.3 162 84-269 3-178 (191)
32 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 4.9E-27 1.1E-31 222.9 21.6 154 115-268 11-164 (166)
33 cd04127 Rab27A Rab27a subfamil 100.0 4.2E-27 9.2E-32 226.4 21.1 164 84-269 4-178 (180)
34 cd01868 Rab11_like Rab11-like. 100.0 8.1E-27 1.8E-31 221.0 21.5 161 85-267 4-164 (165)
35 cd04109 Rab28 Rab28 subfamily. 100.0 7.6E-27 1.6E-31 232.1 21.5 156 115-270 9-168 (215)
36 cd01874 Cdc42 Cdc42 subfamily. 100.0 8.1E-27 1.8E-31 224.4 20.8 150 115-266 10-173 (175)
37 cd04136 Rap_like Rap-like subf 100.0 8.5E-27 1.8E-31 219.9 20.5 152 115-267 10-162 (163)
38 cd04125 RabA_like RabA-like su 100.0 1.4E-26 3E-31 225.0 22.4 157 115-271 9-165 (188)
39 PTZ00369 Ras-like protein; Pro 99.9 2.1E-26 4.5E-31 224.2 22.1 166 83-271 4-170 (189)
40 cd01866 Rab2 Rab2 subfamily. 99.9 2.6E-26 5.7E-31 218.8 22.0 155 115-269 13-167 (168)
41 cd04106 Rab23_lke Rab23-like s 99.9 1.5E-26 3.2E-31 218.2 19.7 151 115-266 9-161 (162)
42 cd04176 Rap2 Rap2 subgroup. T 99.9 2.1E-26 4.6E-31 217.7 20.7 152 115-267 10-162 (163)
43 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 2.8E-26 6.1E-31 219.5 21.6 155 115-269 9-166 (170)
44 PLN03071 GTP-binding nuclear p 99.9 2E-26 4.4E-31 229.7 21.2 163 82-269 11-173 (219)
45 cd04113 Rab4 Rab4 subfamily. 99.9 2.3E-26 4.9E-31 217.0 20.4 152 115-266 9-160 (161)
46 PLN03110 Rab GTPase; Provision 99.9 3.1E-26 6.6E-31 227.9 22.3 166 84-271 12-177 (216)
47 cd04175 Rap1 Rap1 subgroup. T 99.9 2.5E-26 5.4E-31 217.6 20.7 152 115-267 10-162 (164)
48 cd04144 Ras2 Ras2 subfamily. 99.9 2.9E-26 6.4E-31 223.3 20.7 156 115-271 8-166 (190)
49 cd04111 Rab39 Rab39 subfamily. 99.9 4.5E-26 9.8E-31 225.9 22.4 167 84-272 2-170 (211)
50 cd01864 Rab19 Rab19 subfamily. 99.9 3.6E-26 7.7E-31 216.9 20.8 161 84-266 3-164 (165)
51 cd04110 Rab35 Rab35 subfamily. 99.9 4.8E-26 1E-30 223.5 22.3 165 84-271 6-170 (199)
52 cd04126 Rab20 Rab20 subfamily. 99.9 3.4E-26 7.3E-31 227.6 21.3 152 115-271 9-193 (220)
53 cd01871 Rac1_like Rac1-like su 99.9 2.9E-26 6.2E-31 220.3 20.2 150 115-266 10-173 (174)
54 cd04112 Rab26 Rab26 subfamily. 99.9 6.1E-26 1.3E-30 221.2 22.7 157 115-271 9-166 (191)
55 cd00877 Ran Ran (Ras-related n 99.9 5.1E-26 1.1E-30 216.8 21.3 152 115-269 9-160 (166)
56 PLN03108 Rab family protein; P 99.9 1.3E-25 2.8E-30 222.4 24.8 167 83-271 5-171 (210)
57 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 5.3E-26 1.1E-30 226.4 20.8 162 84-269 1-177 (222)
58 cd04116 Rab9 Rab9 subfamily. 99.9 6.4E-26 1.4E-30 216.1 20.6 161 83-266 4-169 (170)
59 cd04138 H_N_K_Ras_like H-Ras/N 99.9 8.1E-26 1.8E-30 212.4 20.8 151 115-267 10-161 (162)
60 cd04140 ARHI_like ARHI subfami 99.9 8.6E-26 1.9E-30 214.5 20.4 150 115-265 10-162 (165)
61 smart00175 RAB Rab subfamily o 99.9 1.3E-25 2.8E-30 211.8 21.4 155 115-269 9-163 (164)
62 smart00176 RAN Ran (Ras-relate 99.9 9.3E-26 2E-30 221.5 20.6 155 112-269 1-155 (200)
63 cd04124 RabL2 RabL2 subfamily. 99.9 1.3E-25 2.9E-30 212.5 21.0 151 115-269 9-159 (161)
64 cd04134 Rho3 Rho3 subfamily. 99.9 1.2E-25 2.7E-30 218.8 20.9 153 115-269 9-175 (189)
65 smart00173 RAS Ras subfamily o 99.9 1.4E-25 3E-30 212.2 20.7 153 115-268 9-162 (164)
66 KOG0083|consensus 99.9 9.6E-28 2.1E-32 210.0 5.3 160 112-271 3-163 (192)
67 cd01861 Rab6 Rab6 subfamily. 99.9 1.5E-25 3.2E-30 211.2 20.6 152 115-266 9-160 (161)
68 cd04145 M_R_Ras_like M-Ras/R-R 99.9 1.9E-25 4E-30 211.0 21.0 152 115-267 11-163 (164)
69 cd01873 RhoBTB RhoBTB subfamil 99.9 1.1E-25 2.4E-30 220.2 19.7 158 84-266 2-194 (195)
70 cd01860 Rab5_related Rab5-rela 99.9 2.5E-25 5.5E-30 210.0 21.5 153 115-267 10-162 (163)
71 cd04115 Rab33B_Rab33A Rab33B/R 99.9 2.1E-25 4.5E-30 213.0 20.5 153 115-267 11-168 (170)
72 cd04142 RRP22 RRP22 subfamily. 99.9 2.6E-25 5.7E-30 218.2 21.0 155 115-269 9-175 (198)
73 cd04118 Rab24 Rab24 subfamily. 99.9 3.8E-25 8.3E-30 215.5 22.0 155 115-270 9-168 (193)
74 cd04101 RabL4 RabL4 (Rab-like4 99.9 3.1E-25 6.7E-30 209.8 20.4 152 115-267 9-163 (164)
75 COG1160 Predicted GTPases [Gen 99.9 4E-26 8.7E-31 240.5 15.6 220 115-394 12-243 (444)
76 KOG0081|consensus 99.9 5.1E-27 1.1E-31 211.4 7.4 159 115-273 18-186 (219)
77 cd04132 Rho4_like Rho4-like su 99.9 3.6E-25 7.8E-30 214.5 20.3 155 115-271 9-170 (187)
78 smart00174 RHO Rho (Ras homolo 99.9 3.7E-25 8E-30 211.5 19.6 156 111-268 3-172 (174)
79 cd04103 Centaurin_gamma Centau 99.9 6.6E-25 1.4E-29 207.6 19.5 145 115-266 9-157 (158)
80 cd04123 Rab21 Rab21 subfamily. 99.9 1.5E-24 3.2E-29 203.8 21.5 153 115-267 9-161 (162)
81 cd04143 Rhes_like Rhes_like su 99.9 9.3E-25 2E-29 221.3 20.7 152 115-267 9-170 (247)
82 cd01892 Miro2 Miro2 subfamily. 99.9 8.7E-25 1.9E-29 209.0 19.0 161 84-268 4-166 (169)
83 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1.4E-24 3.1E-29 207.8 20.1 148 115-264 9-170 (173)
84 cd04146 RERG_RasL11_like RERG/ 99.9 1.2E-24 2.5E-29 206.5 19.0 153 115-268 8-164 (165)
85 PLN03118 Rab family protein; P 99.9 2.5E-24 5.3E-29 213.3 22.0 164 84-270 14-179 (211)
86 cd01863 Rab18 Rab18 subfamily. 99.9 2.7E-24 5.8E-29 202.7 21.1 151 115-266 9-160 (161)
87 cd04177 RSR1 RSR1 subgroup. R 99.9 2.9E-24 6.2E-29 204.7 21.3 154 115-269 10-165 (168)
88 cd01862 Rab7 Rab7 subfamily. 99.9 3.3E-24 7.2E-29 204.0 21.6 156 115-270 9-169 (172)
89 cd04135 Tc10 TC10 subfamily. 99.9 3.5E-24 7.7E-29 204.7 20.7 151 115-267 9-173 (174)
90 cd04148 RGK RGK subfamily. Th 99.9 3.9E-24 8.6E-29 213.5 21.1 154 115-270 9-165 (221)
91 cd04114 Rab30 Rab30 subfamily. 99.9 8.7E-24 1.9E-28 200.9 21.6 153 115-267 16-168 (169)
92 KOG0395|consensus 99.9 3E-24 6.6E-29 209.5 17.5 154 115-269 12-166 (196)
93 cd00154 Rab Rab family. Rab G 99.9 8.3E-24 1.8E-28 196.9 19.6 150 115-264 9-158 (159)
94 PRK03003 GTP-binding protein D 99.9 3.9E-24 8.5E-29 236.5 19.4 214 115-388 47-270 (472)
95 cd04139 RalA_RalB RalA/RalB su 99.9 1.8E-23 3.9E-28 197.0 20.7 153 115-268 9-162 (164)
96 cd01870 RhoA_like RhoA-like su 99.9 2.7E-23 5.8E-28 198.8 20.7 151 115-267 10-174 (175)
97 cd04149 Arf6 Arf6 subfamily. 99.9 2E-23 4.4E-28 199.4 17.0 154 83-265 8-167 (168)
98 cd00876 Ras Ras family. The R 99.9 5E-23 1.1E-27 193.0 18.9 153 113-266 6-159 (160)
99 cd04129 Rho2 Rho2 subfamily. 99.9 9.6E-23 2.1E-27 198.0 20.8 153 115-269 10-174 (187)
100 cd04150 Arf1_5_like Arf1-Arf5- 99.9 1.5E-23 3.3E-28 198.3 14.2 144 115-265 9-158 (159)
101 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 1.3E-23 2.9E-28 199.8 13.6 146 115-265 8-163 (164)
102 cd04158 ARD1 ARD1 subfamily. 99.9 6.2E-23 1.3E-27 195.9 18.2 148 115-269 8-162 (169)
103 cd04147 Ras_dva Ras-dva subfam 99.9 9.6E-23 2.1E-27 199.9 19.8 153 115-268 8-163 (198)
104 KOG0393|consensus 99.9 1.1E-23 2.3E-28 201.8 11.9 164 83-270 3-181 (198)
105 PLN00223 ADP-ribosylation fact 99.9 7.7E-23 1.7E-27 197.9 18.1 155 83-269 16-179 (181)
106 cd04102 RabL3 RabL3 (Rab-like3 99.9 7.3E-23 1.6E-27 201.1 18.1 149 85-255 1-177 (202)
107 smart00177 ARF ARF-like small 99.9 3.3E-23 7.1E-28 199.2 15.3 156 83-267 12-173 (175)
108 cd00157 Rho Rho (Ras homology) 99.9 1.7E-22 3.7E-27 192.1 19.9 149 115-265 9-170 (171)
109 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1E-22 2.3E-27 197.1 18.0 163 84-271 3-173 (183)
110 cd04137 RheB Rheb (Ras Homolog 99.9 3.4E-22 7.3E-27 192.3 20.5 155 115-270 10-165 (180)
111 KOG4252|consensus 99.9 2.7E-24 5.9E-29 197.5 5.3 168 83-273 19-186 (246)
112 PTZ00133 ADP-ribosylation fact 99.9 7.7E-23 1.7E-27 198.0 15.3 159 83-270 16-180 (182)
113 cd01893 Miro1 Miro1 subfamily. 99.9 2.9E-22 6.3E-27 190.6 18.9 151 115-268 9-164 (166)
114 PTZ00132 GTP-binding nuclear p 99.9 5.4E-22 1.2E-26 197.1 21.6 164 81-269 6-169 (215)
115 cd04154 Arl2 Arl2 subfamily. 99.9 2.8E-22 6E-27 192.0 17.4 154 83-265 13-172 (173)
116 cd04157 Arl6 Arl6 subfamily. 99.9 1.9E-22 4.2E-27 189.9 14.2 147 113-265 6-161 (162)
117 PTZ00099 rab6; Provisional 99.9 1.4E-21 3.1E-26 188.1 19.0 142 129-270 3-144 (176)
118 TIGR03594 GTPase_EngA ribosome 99.9 7.8E-22 1.7E-26 216.1 17.9 212 115-388 8-231 (429)
119 PRK00093 GTP-binding protein D 99.9 1.4E-21 3E-26 214.6 18.8 210 115-389 10-233 (435)
120 PRK09518 bifunctional cytidyla 99.9 1.6E-21 3.4E-26 225.5 20.1 217 115-390 284-511 (712)
121 PLN00023 GTP-binding protein; 99.9 1.8E-21 3.8E-26 200.7 17.8 139 83-243 20-189 (334)
122 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 3E-21 6.5E-26 185.3 17.3 144 115-265 24-173 (174)
123 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.7E-21 3.7E-26 183.3 15.1 147 113-265 6-159 (160)
124 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.2E-21 2.7E-26 186.8 13.7 146 113-265 6-166 (167)
125 cd04151 Arl1 Arl1 subfamily. 99.9 1.7E-21 3.7E-26 183.5 13.8 144 115-265 8-157 (158)
126 cd00879 Sar1 Sar1 subfamily. 99.9 4.9E-21 1.1E-25 186.0 17.0 154 84-266 19-189 (190)
127 cd00878 Arf_Arl Arf (ADP-ribos 99.9 3.6E-21 7.8E-26 180.9 14.9 144 115-265 8-157 (158)
128 cd04160 Arfrp1 Arfrp1 subfamil 99.9 9.9E-21 2.2E-25 179.5 16.6 145 115-265 8-166 (167)
129 smart00178 SAR Sar1p-like memb 99.8 4E-20 8.6E-25 179.3 16.9 156 82-266 15-183 (184)
130 cd01890 LepA LepA subfamily. 99.8 5.1E-20 1.1E-24 176.7 16.8 147 115-267 9-176 (179)
131 cd04159 Arl10_like Arl10-like 99.8 3.2E-20 6.9E-25 172.9 14.5 148 112-265 5-158 (159)
132 PF00025 Arf: ADP-ribosylation 99.8 3.1E-19 6.7E-24 171.7 18.0 157 82-267 12-175 (175)
133 cd01897 NOG NOG1 is a nucleola 99.8 2.3E-19 5E-24 170.2 16.3 148 115-267 9-167 (168)
134 TIGR00231 small_GTP small GTP- 99.8 7.9E-19 1.7E-23 162.5 18.5 149 115-264 10-160 (161)
135 KOG3905|consensus 99.8 4.6E-20 9.9E-25 184.4 10.3 256 86-414 54-395 (473)
136 KOG1673|consensus 99.8 8E-20 1.7E-24 164.5 10.6 165 83-270 19-188 (205)
137 cd01898 Obg Obg subfamily. Th 99.8 2.5E-19 5.3E-24 170.2 14.7 152 111-266 5-169 (170)
138 TIGR02528 EutP ethanolamine ut 99.8 9E-20 2E-24 168.5 11.3 127 115-264 9-141 (142)
139 cd04155 Arl3 Arl3 subfamily. 99.8 6.1E-19 1.3E-23 168.3 17.3 150 84-265 14-172 (173)
140 cd04171 SelB SelB subfamily. 99.8 5.5E-19 1.2E-23 166.3 15.9 144 115-265 9-163 (164)
141 COG1100 GTPase SAR1 and relate 99.8 1.5E-18 3.2E-23 172.4 19.1 164 85-270 6-187 (219)
142 PRK12299 obgE GTPase CgtA; Rev 99.8 8.2E-19 1.8E-23 184.9 16.8 159 108-269 160-329 (335)
143 cd01879 FeoB Ferrous iron tran 99.8 1.9E-18 4.2E-23 161.8 17.1 147 111-266 1-155 (158)
144 cd01878 HflX HflX subfamily. 99.8 9.7E-19 2.1E-23 172.1 15.1 151 85-266 42-203 (204)
145 cd00882 Ras_like_GTPase Ras-li 99.8 6.1E-18 1.3E-22 154.6 17.6 153 111-264 1-156 (157)
146 PF14438 SM-ATX: Ataxin 2 SM d 99.8 1.3E-19 2.8E-24 150.0 5.6 72 450-521 1-77 (77)
147 KOG0073|consensus 99.8 3.6E-18 7.9E-23 155.7 15.4 161 82-269 14-179 (185)
148 PRK04213 GTP-binding protein; 99.8 5.5E-19 1.2E-23 173.3 10.5 150 83-269 8-193 (201)
149 cd01891 TypA_BipA TypA (tyrosi 99.8 3.2E-18 7E-23 167.2 13.6 141 115-259 11-173 (194)
150 cd01881 Obg_like The Obg-like 99.8 5.1E-18 1.1E-22 161.8 13.0 153 111-266 1-175 (176)
151 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.6E-17 3.4E-22 157.3 15.5 149 115-267 9-165 (168)
152 TIGR03156 GTP_HflX GTP-binding 99.7 2.1E-17 4.6E-22 175.5 16.9 152 85-266 190-350 (351)
153 TIGR00436 era GTP-binding prot 99.7 2E-17 4.4E-22 170.2 15.4 152 109-267 3-163 (270)
154 cd01894 EngA1 EngA1 subfamily. 99.7 1.7E-17 3.8E-22 154.8 13.5 145 110-266 1-156 (157)
155 KOG0070|consensus 99.7 1.3E-17 2.8E-22 156.2 12.3 160 81-269 14-179 (181)
156 PF02421 FeoB_N: Ferrous iron 99.7 1.4E-17 2.9E-22 155.9 12.3 140 115-263 9-156 (156)
157 PF08477 Miro: Miro-like prote 99.7 4.5E-17 9.7E-22 145.8 14.8 107 115-222 8-119 (119)
158 PRK15494 era GTPase Era; Provi 99.7 3.5E-17 7.5E-22 173.5 16.3 154 82-268 50-216 (339)
159 TIGR02729 Obg_CgtA Obg family 99.7 5.4E-17 1.2E-21 170.9 17.5 155 109-267 160-328 (329)
160 COG1159 Era GTPase [General fu 99.7 8.3E-18 1.8E-22 169.1 10.4 162 103-269 3-173 (298)
161 TIGR00450 mnmE_trmE_thdF tRNA 99.7 4.9E-17 1.1E-21 177.6 17.1 152 83-270 202-362 (442)
162 cd04164 trmE TrmE (MnmE, ThdF, 99.7 6.4E-17 1.4E-21 150.8 15.3 138 115-267 10-156 (157)
163 KOG0075|consensus 99.7 4.9E-18 1.1E-22 151.8 6.8 144 115-267 29-181 (186)
164 KOG3883|consensus 99.7 9.5E-17 2.1E-21 144.5 15.0 165 107-272 10-179 (198)
165 PRK03003 GTP-binding protein D 99.7 4.7E-17 1E-21 180.1 14.7 149 115-269 220-383 (472)
166 PRK15467 ethanolamine utilizat 99.7 4.6E-17 1E-21 154.0 12.0 133 115-269 10-148 (158)
167 PF05783 DLIC: Dynein light in 99.7 3.4E-17 7.4E-22 178.3 12.4 289 115-460 34-410 (472)
168 PRK05291 trmE tRNA modificatio 99.7 7.1E-17 1.5E-21 177.2 14.7 148 84-269 215-371 (449)
169 PRK00089 era GTPase Era; Revie 99.7 8.2E-17 1.8E-21 167.5 13.5 160 104-268 3-171 (292)
170 PRK00454 engB GTP-binding prot 99.7 3.7E-16 8E-21 152.3 16.6 155 82-267 22-193 (196)
171 cd01889 SelB_euk SelB subfamil 99.7 1.4E-16 3.1E-21 155.3 13.6 150 115-268 9-186 (192)
172 COG1160 Predicted GTPases [Gen 99.7 1.3E-16 2.9E-21 168.7 14.1 159 84-269 178-352 (444)
173 cd00881 GTP_translation_factor 99.7 2.4E-16 5.1E-21 151.9 14.5 152 112-267 5-186 (189)
174 PRK12297 obgE GTPase CgtA; Rev 99.7 5E-16 1.1E-20 167.9 18.5 154 109-269 161-328 (424)
175 TIGR01393 lepA GTP-binding pro 99.7 3.1E-16 6.8E-21 177.1 17.5 147 115-267 12-179 (595)
176 PRK11058 GTPase HflX; Provisio 99.7 3.9E-16 8.5E-21 169.6 17.5 149 115-269 206-363 (426)
177 TIGR03598 GTPase_YsxC ribosome 99.7 2.7E-16 6E-21 151.6 14.2 148 81-257 15-179 (179)
178 TIGR03594 GTPase_EngA ribosome 99.7 5.6E-16 1.2E-20 169.9 17.9 149 115-269 181-345 (429)
179 KOG0096|consensus 99.7 7.5E-17 1.6E-21 150.5 8.9 161 84-269 10-170 (216)
180 KOG4423|consensus 99.7 3.5E-18 7.5E-23 158.7 -1.2 157 115-271 34-197 (229)
181 cd01895 EngA2 EngA2 subfamily. 99.7 1.5E-15 3.3E-20 143.7 16.1 145 115-265 11-172 (174)
182 COG0218 Predicted GTPase [Gene 99.7 1.4E-15 2.9E-20 145.6 15.5 154 85-268 25-197 (200)
183 KOG0071|consensus 99.7 1.5E-15 3.2E-20 135.0 14.2 156 83-267 16-177 (180)
184 cd04163 Era Era subfamily. Er 99.7 1.5E-15 3.3E-20 142.2 15.0 146 115-266 12-167 (168)
185 PRK12296 obgE GTPase CgtA; Rev 99.7 2.4E-15 5.2E-20 164.6 18.6 159 109-270 162-342 (500)
186 TIGR00437 feoB ferrous iron tr 99.7 9E-16 1.9E-20 173.4 15.6 146 113-267 1-154 (591)
187 PRK12298 obgE GTPase CgtA; Rev 99.7 1.3E-15 2.8E-20 163.7 15.5 158 109-269 162-334 (390)
188 cd00880 Era_like Era (E. coli 99.6 3.6E-15 7.8E-20 137.9 15.1 151 111-266 1-162 (163)
189 TIGR00487 IF-2 translation ini 99.6 3.4E-15 7.3E-20 168.0 17.4 154 82-265 85-247 (587)
190 PRK09554 feoB ferrous iron tra 99.6 3.1E-15 6.7E-20 172.9 16.8 144 115-267 12-167 (772)
191 TIGR00475 selB selenocysteine- 99.6 3.5E-15 7.5E-20 168.5 16.7 146 114-268 8-166 (581)
192 cd01888 eIF2_gamma eIF2-gamma 99.6 3.7E-15 7.9E-20 146.9 13.8 107 155-267 83-198 (203)
193 COG0486 ThdF Predicted GTPase 99.6 4.3E-15 9.3E-20 157.8 14.9 155 83-270 216-378 (454)
194 COG5180 PBP1 Protein interacti 99.6 3E-16 6.4E-21 162.2 5.7 124 461-606 34-188 (654)
195 PRK00093 GTP-binding protein D 99.6 9.5E-15 2.1E-19 160.5 17.4 149 115-269 182-345 (435)
196 cd04105 SR_beta Signal recogni 99.6 9E-15 1.9E-19 144.1 15.4 110 115-225 9-123 (203)
197 cd01876 YihA_EngB The YihA (En 99.6 1.5E-14 3.3E-19 135.9 13.7 143 115-266 8-169 (170)
198 PRK05306 infB translation init 99.6 1.5E-14 3.2E-19 166.6 16.0 144 115-265 299-449 (787)
199 CHL00189 infB translation init 99.6 2.5E-14 5.4E-19 163.2 17.2 145 115-266 253-408 (742)
200 PRK05433 GTP-binding protein L 99.6 2.6E-14 5.6E-19 161.8 17.2 147 115-267 16-183 (600)
201 PRK09518 bifunctional cytidyla 99.6 1.4E-14 3.1E-19 167.8 15.1 147 115-269 459-622 (712)
202 cd01896 DRG The developmentall 99.6 7.2E-14 1.6E-18 140.6 18.2 149 110-267 4-225 (233)
203 PRK12317 elongation factor 1-a 99.6 2.2E-14 4.7E-19 157.1 13.9 156 82-261 4-198 (425)
204 TIGR00157 ribosome small subun 99.6 5.7E-15 1.2E-19 149.6 8.6 95 166-264 24-119 (245)
205 TIGR00491 aIF-2 translation in 99.6 4.3E-14 9.2E-19 158.9 15.1 153 108-267 6-215 (590)
206 PF00009 GTP_EFTU: Elongation 99.5 2E-14 4.4E-19 139.8 10.6 148 115-268 12-187 (188)
207 KOG0074|consensus 99.5 3.5E-14 7.6E-19 126.5 10.7 153 82-265 15-176 (185)
208 KOG0076|consensus 99.5 2E-14 4.3E-19 132.6 8.5 149 115-269 26-188 (197)
209 cd04166 CysN_ATPS CysN_ATPS su 99.5 3.8E-14 8.2E-19 140.2 11.2 147 110-259 3-185 (208)
210 TIGR00483 EF-1_alpha translati 99.5 5.1E-14 1.1E-18 154.2 12.2 155 83-261 6-200 (426)
211 KOG0072|consensus 99.5 2.8E-14 6.2E-19 127.5 6.9 148 115-269 27-180 (182)
212 COG2229 Predicted GTPase [Gene 99.5 7.3E-13 1.6E-17 124.2 15.1 155 82-266 8-176 (187)
213 TIGR01394 TypA_BipA GTP-bindin 99.5 2.5E-13 5.3E-18 153.4 14.4 149 115-267 10-190 (594)
214 PRK10218 GTP-binding protein; 99.5 6.2E-13 1.3E-17 150.0 17.5 149 115-267 14-194 (607)
215 KOG1707|consensus 99.5 8.6E-14 1.9E-18 149.8 9.4 165 81-269 6-176 (625)
216 TIGR03680 eif2g_arch translati 99.5 1.7E-13 3.8E-18 148.9 11.8 112 154-267 79-195 (406)
217 PRK10512 selenocysteinyl-tRNA- 99.5 6.7E-13 1.5E-17 150.5 16.8 148 112-267 6-165 (614)
218 COG1084 Predicted GTPase [Gene 99.5 4.4E-13 9.6E-18 136.2 12.4 214 19-267 109-335 (346)
219 cd04167 Snu114p Snu114p subfam 99.5 5E-13 1.1E-17 132.7 12.8 106 115-224 9-136 (213)
220 cd04168 TetM_like Tet(M)-like 99.4 1.2E-12 2.6E-17 132.0 14.9 109 112-224 5-129 (237)
221 PRK04004 translation initiatio 99.4 1.5E-12 3.2E-17 147.1 16.7 146 115-267 15-217 (586)
222 PF10662 PduV-EutP: Ethanolami 99.4 8.5E-13 1.8E-17 121.1 11.8 128 115-264 10-142 (143)
223 cd01884 EF_Tu EF-Tu subfamily. 99.4 2.3E-12 5E-17 126.1 15.6 139 115-257 11-172 (195)
224 KOG2375|consensus 99.4 3.1E-13 6.6E-18 150.3 10.3 159 449-611 56-254 (756)
225 PRK04000 translation initiatio 99.4 9E-13 2E-17 143.4 13.7 110 155-267 85-200 (411)
226 COG0370 FeoB Fe2+ transport sy 99.4 6.2E-13 1.3E-17 147.0 12.2 144 115-267 12-163 (653)
227 COG2262 HflX GTPases [General 99.4 3E-12 6.4E-17 134.0 14.8 152 111-270 197-358 (411)
228 KOG1489|consensus 99.4 2.9E-12 6.3E-17 129.2 12.9 149 107-265 197-364 (366)
229 cd04104 p47_IIGP_like p47 (47- 99.4 5.6E-12 1.2E-16 123.6 14.5 148 115-270 10-186 (197)
230 KOG1423|consensus 99.4 6.5E-12 1.4E-16 126.0 14.0 160 82-268 70-271 (379)
231 cd04165 GTPBP1_like GTPBP1-lik 99.4 7.9E-12 1.7E-16 125.0 14.5 107 154-264 83-219 (224)
232 KOG1191|consensus 99.4 1.9E-12 4.1E-17 137.3 10.3 165 83-271 267-453 (531)
233 cd01883 EF1_alpha Eukaryotic e 99.4 2.4E-12 5.3E-17 128.3 10.3 144 111-257 4-194 (219)
234 TIGR00485 EF-Tu translation el 99.4 8.6E-12 1.9E-16 135.3 15.0 152 83-260 11-186 (394)
235 cd01899 Ygr210 Ygr210 subfamil 99.4 4.8E-12 1E-16 132.5 12.4 80 110-189 2-110 (318)
236 PRK12736 elongation factor Tu; 99.3 1.2E-11 2.6E-16 134.1 15.1 148 115-266 21-199 (394)
237 cd01859 MJ1464 MJ1464. This f 99.3 7.5E-12 1.6E-16 117.8 11.7 145 168-376 2-146 (156)
238 PRK12735 elongation factor Tu; 99.3 1.7E-11 3.6E-16 133.0 15.1 157 83-265 11-200 (396)
239 PRK12289 GTPase RsgA; Reviewed 99.3 5.4E-12 1.2E-16 133.7 10.8 94 166-264 77-171 (352)
240 COG1163 DRG Predicted GTPase [ 99.3 1.9E-11 4.2E-16 123.9 13.2 152 108-268 65-289 (365)
241 cd01850 CDC_Septin CDC/Septin. 99.3 1.5E-11 3.3E-16 126.8 12.8 132 115-251 13-185 (276)
242 cd04169 RF3 RF3 subfamily. Pe 99.3 3.8E-11 8.2E-16 123.2 14.7 107 115-225 11-137 (267)
243 CHL00071 tufA elongation facto 99.3 3.4E-11 7.4E-16 131.1 15.2 138 115-256 21-181 (409)
244 COG0536 Obg Predicted GTPase [ 99.3 4E-11 8.6E-16 122.6 14.2 156 109-271 162-336 (369)
245 PRK12288 GTPase RsgA; Reviewed 99.3 1.7E-11 3.6E-16 130.0 10.0 86 176-264 118-204 (347)
246 cd01855 YqeH YqeH. YqeH is an 99.2 3.8E-11 8.2E-16 117.0 10.7 93 168-267 24-124 (190)
247 PRK05124 cysN sulfate adenylyl 99.2 4.1E-11 8.9E-16 132.5 12.2 154 82-260 25-217 (474)
248 PRK00741 prfC peptide chain re 99.2 1E-10 2.3E-15 130.5 15.4 106 115-224 19-144 (526)
249 PRK13351 elongation factor G; 99.2 1.2E-10 2.6E-15 135.1 15.4 107 115-225 17-139 (687)
250 TIGR02034 CysN sulfate adenyly 99.2 8E-11 1.7E-15 128.1 13.1 142 115-259 9-188 (406)
251 PLN03126 Elongation factor Tu; 99.2 1.8E-10 4E-15 127.0 15.7 138 115-256 90-250 (478)
252 PRK05506 bifunctional sulfate 99.2 1E-10 2.2E-15 134.3 14.0 151 83-258 23-211 (632)
253 PRK00049 elongation factor Tu; 99.2 2.3E-10 5E-15 124.1 15.8 137 115-255 21-180 (396)
254 PF01926 MMR_HSR1: 50S ribosom 99.2 1.2E-10 2.5E-15 104.0 11.0 98 115-220 8-116 (116)
255 cd01856 YlqF YlqF. Proteins o 99.2 7E-11 1.5E-15 113.2 10.2 163 167-387 8-170 (171)
256 smart00010 small_GTPase Small 99.2 1.1E-10 2.4E-15 104.5 10.5 106 115-257 9-115 (124)
257 cd04170 EF-G_bact Elongation f 99.2 6.2E-11 1.4E-15 121.9 9.5 147 110-262 3-167 (268)
258 cd01886 EF-G Elongation factor 99.2 1.3E-10 2.8E-15 119.4 11.7 110 112-225 5-130 (270)
259 cd01885 EF2 EF2 (for archaea a 99.2 2E-10 4.3E-15 114.6 12.4 79 152-234 70-149 (222)
260 PRK00098 GTPase RsgA; Reviewed 99.2 4.2E-11 9.1E-16 124.9 7.8 84 176-263 78-162 (298)
261 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 3.7E-10 8E-15 110.6 13.9 153 115-269 9-185 (196)
262 PLN00043 elongation factor 1-a 99.2 3.2E-10 6.9E-15 124.5 14.6 140 115-258 16-203 (447)
263 TIGR00503 prfC peptide chain r 99.2 5.2E-10 1.1E-14 125.0 16.2 106 115-224 20-145 (527)
264 cd01854 YjeQ_engC YjeQ/EngC. 99.2 7.3E-11 1.6E-15 122.5 8.6 84 175-263 75-159 (287)
265 KOG0462|consensus 99.2 2.2E-10 4.7E-15 122.9 12.2 150 115-268 69-235 (650)
266 PLN03127 Elongation factor Tu; 99.2 5.7E-10 1.2E-14 122.4 15.9 158 83-266 60-250 (447)
267 cd01858 NGP_1 NGP-1. Autoanti 99.1 3.1E-10 6.7E-15 107.1 11.6 122 174-355 4-127 (157)
268 KOG0077|consensus 99.1 9.5E-11 2.1E-15 107.7 7.2 145 115-266 29-191 (193)
269 KOG2375|consensus 99.1 7.3E-12 1.6E-16 139.5 -0.2 177 429-606 204-400 (756)
270 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 7.5E-10 1.6E-14 110.6 14.0 149 115-268 8-176 (232)
271 PRK09602 translation-associate 99.1 8E-10 1.7E-14 119.3 15.1 75 115-189 10-113 (396)
272 COG0481 LepA Membrane GTPase L 99.1 6.7E-10 1.4E-14 117.4 13.5 149 115-269 18-187 (603)
273 PF09439 SRPRB: Signal recogni 99.1 1.4E-10 3.1E-15 111.0 7.9 107 115-225 12-126 (181)
274 cd01857 HSR1_MMR1 HSR1/MMR1. 99.1 4.6E-10 1E-14 104.0 10.6 133 172-388 5-139 (141)
275 cd01849 YlqF_related_GTPase Yl 99.1 6.5E-10 1.4E-14 104.7 11.4 152 180-386 1-154 (155)
276 COG3596 Predicted GTPase [Gene 99.1 4E-10 8.7E-15 112.4 10.2 161 82-268 37-222 (296)
277 TIGR03596 GTPase_YlqF ribosome 99.1 6.2E-10 1.3E-14 115.0 12.2 161 170-388 13-174 (276)
278 PTZ00327 eukaryotic translatio 99.1 5.1E-10 1.1E-14 122.7 11.9 110 155-267 117-232 (460)
279 PTZ00141 elongation factor 1- 99.1 1.1E-09 2.3E-14 120.4 13.3 141 115-258 16-203 (446)
280 TIGR03597 GTPase_YqeH ribosome 99.1 4.2E-10 9E-15 120.5 9.8 94 165-265 50-150 (360)
281 TIGR00484 EF-G translation elo 99.1 1.6E-09 3.4E-14 125.7 14.5 133 115-253 19-171 (689)
282 COG0532 InfB Translation initi 99.0 2.4E-09 5.3E-14 115.8 14.7 143 115-267 14-169 (509)
283 PRK09563 rbgA GTPase YlqF; Rev 99.0 1.5E-09 3.2E-14 112.8 12.6 161 170-388 16-177 (287)
284 KOG0090|consensus 99.0 2.2E-09 4.7E-14 103.1 11.5 146 115-266 47-237 (238)
285 KOG1490|consensus 99.0 6.4E-10 1.4E-14 118.2 8.5 155 115-272 177-345 (620)
286 PRK12739 elongation factor G; 99.0 3.2E-09 7E-14 123.1 15.1 107 115-225 17-139 (691)
287 PRK09866 hypothetical protein; 99.0 6.4E-09 1.4E-13 115.1 16.3 109 155-265 230-350 (741)
288 PRK12740 elongation factor G; 99.0 3E-09 6.5E-14 123.2 14.5 109 112-224 1-125 (668)
289 COG4917 EutP Ethanolamine util 99.0 1E-09 2.2E-14 96.5 7.7 132 112-265 7-143 (148)
290 PRK14845 translation initiatio 99.0 6.8E-09 1.5E-13 122.7 14.8 140 117-267 472-672 (1049)
291 COG1162 Predicted GTPases [Gen 99.0 2.3E-09 5E-14 109.5 9.4 97 166-265 67-164 (301)
292 KOG0084|consensus 98.9 6.2E-10 1.3E-14 105.6 4.5 57 328-384 7-63 (205)
293 KOG0094|consensus 98.9 6.1E-10 1.3E-14 105.2 4.4 58 327-384 19-76 (221)
294 KOG1145|consensus 98.9 2.1E-08 4.5E-13 107.9 15.3 145 115-267 162-315 (683)
295 TIGR00991 3a0901s02IAP34 GTP-b 98.9 1.5E-08 3.2E-13 104.7 13.8 124 83-230 37-172 (313)
296 PTZ00258 GTP-binding protein; 98.9 2E-08 4.4E-13 107.5 13.9 75 115-189 30-126 (390)
297 PRK00007 elongation factor G; 98.9 1.5E-08 3.3E-13 117.4 13.5 133 115-253 19-171 (693)
298 PRK13796 GTPase YqeH; Provisio 98.9 9.5E-09 2.1E-13 110.2 10.3 92 167-265 58-156 (365)
299 cd01853 Toc34_like Toc34-like 98.8 3E-08 6.4E-13 100.7 12.8 120 83-226 30-164 (249)
300 TIGR00490 aEF-2 translation el 98.8 1.3E-08 2.8E-13 118.4 10.8 114 85-224 20-151 (720)
301 PRK13768 GTPase; Provisional 98.8 1.7E-08 3.7E-13 102.9 9.9 109 156-267 98-246 (253)
302 cd01882 BMS1 Bms1. Bms1 is an 98.8 3.8E-08 8.3E-13 98.6 11.1 130 115-256 48-184 (225)
303 COG5256 TEF1 Translation elong 98.8 4.8E-08 1E-12 102.7 11.7 144 115-259 16-202 (428)
304 KOG1707|consensus 98.8 9.6E-08 2.1E-12 103.8 14.3 151 112-267 431-582 (625)
305 TIGR00073 hypB hydrogenase acc 98.8 3.2E-08 6.9E-13 97.8 9.7 55 212-266 149-205 (207)
306 TIGR00101 ureG urease accessor 98.7 6.4E-08 1.4E-12 95.1 11.3 102 155-267 92-195 (199)
307 KOG0092|consensus 98.7 1.5E-08 3.2E-13 95.9 5.4 58 327-384 2-59 (200)
308 PRK09601 GTP-binding protein Y 98.7 1.7E-07 3.7E-12 99.3 13.9 43 212-254 200-243 (364)
309 cd01900 YchF YchF subfamily. 98.7 6.6E-08 1.4E-12 99.2 9.6 80 110-189 2-103 (274)
310 PRK01889 GTPase RsgA; Reviewed 98.7 6.5E-08 1.4E-12 103.4 9.8 83 176-263 110-192 (356)
311 TIGR02836 spore_IV_A stage IV 98.7 2.2E-07 4.7E-12 98.4 13.2 155 82-263 15-232 (492)
312 COG2895 CysN GTPases - Sulfate 98.6 2.3E-07 5.1E-12 95.3 12.2 142 113-257 13-192 (431)
313 KOG0394|consensus 98.6 1E-08 2.2E-13 96.1 1.9 54 331-384 10-63 (210)
314 KOG0095|consensus 98.6 3.8E-08 8.2E-13 88.9 5.4 56 330-385 7-62 (213)
315 PRK09435 membrane ATPase/prote 98.6 2.1E-07 4.5E-12 98.0 11.7 107 154-271 148-263 (332)
316 KOG0078|consensus 98.6 3.6E-08 7.8E-13 94.9 4.9 57 328-384 10-66 (207)
317 PF03029 ATP_bind_1: Conserved 98.6 3.3E-08 7.2E-13 99.7 4.3 112 156-267 92-236 (238)
318 PF04548 AIG1: AIG1 family; I 98.6 2.6E-07 5.7E-12 91.7 10.5 150 115-268 9-186 (212)
319 COG5257 GCD11 Translation init 98.6 9.2E-07 2E-11 89.9 14.0 113 155-269 86-203 (415)
320 KOG0080|consensus 98.6 5.4E-08 1.2E-12 89.1 4.6 68 329-396 10-79 (209)
321 COG1217 TypA Predicted membran 98.6 7.3E-07 1.6E-11 94.5 13.6 151 115-269 14-196 (603)
322 KOG1486|consensus 98.6 1.3E-06 2.8E-11 85.9 14.0 161 84-268 54-288 (364)
323 PF06741 LsmAD: LsmAD domain; 98.5 4.2E-08 9.1E-13 78.9 2.6 31 578-611 1-32 (72)
324 KOG0079|consensus 98.5 2.8E-08 6E-13 89.7 1.8 55 331-385 9-63 (198)
325 KOG0098|consensus 98.5 6.4E-08 1.4E-12 91.0 4.1 58 327-384 3-60 (216)
326 cd04178 Nucleostemin_like Nucl 98.5 3.4E-07 7.3E-12 87.8 9.1 54 314-386 117-171 (172)
327 PF05049 IIGP: Interferon-indu 98.5 3.9E-07 8.5E-12 96.7 10.3 160 81-270 32-220 (376)
328 TIGR00750 lao LAO/AO transport 98.5 3.7E-07 8E-12 95.5 9.9 104 154-268 126-238 (300)
329 KOG0705|consensus 98.5 2.3E-07 4.9E-12 99.7 8.3 150 115-271 39-192 (749)
330 KOG1144|consensus 98.5 2.7E-07 5.8E-12 102.1 8.9 164 101-271 470-690 (1064)
331 PRK07560 elongation factor EF- 98.5 1.3E-06 2.8E-11 102.2 14.2 106 115-224 29-152 (731)
332 KOG0410|consensus 98.5 1.2E-07 2.6E-12 96.3 4.4 151 106-270 178-343 (410)
333 smart00053 DYNc Dynamin, GTPas 98.4 1.3E-06 2.9E-11 87.9 10.9 69 155-226 125-207 (240)
334 KOG3886|consensus 98.4 3.8E-07 8.1E-12 88.7 6.6 141 85-251 5-162 (295)
335 PF00350 Dynamin_N: Dynamin fa 98.4 1.4E-06 3.1E-11 82.5 10.5 63 156-221 102-168 (168)
336 KOG2486|consensus 98.4 5.6E-07 1.2E-11 90.0 7.6 150 107-265 137-313 (320)
337 COG3276 SelB Selenocysteine-sp 98.4 7.9E-06 1.7E-10 86.9 15.3 149 115-267 9-161 (447)
338 PLN00116 translation elongatio 98.4 9.9E-07 2.2E-11 104.4 9.4 68 153-224 96-163 (843)
339 COG0012 Predicted GTPase, prob 98.4 6.1E-06 1.3E-10 86.5 14.1 41 212-252 207-248 (372)
340 PF00735 Septin: Septin; Inte 98.4 3E-06 6.4E-11 87.6 11.6 139 84-249 4-182 (281)
341 KOG0087|consensus 98.3 3.6E-07 7.7E-12 87.9 4.2 67 330-396 14-82 (222)
342 COG1161 Predicted GTPases [Gen 98.3 9.7E-07 2.1E-11 93.1 8.0 170 161-388 16-188 (322)
343 PTZ00416 elongation factor 2; 98.3 1.5E-06 3.2E-11 102.8 10.3 67 154-224 91-157 (836)
344 KOG1532|consensus 98.3 6.2E-06 1.3E-10 82.3 12.4 113 154-270 115-266 (366)
345 TIGR00993 3a0901s04IAP86 chlor 98.3 4.7E-06 1E-10 93.1 12.7 109 115-225 127-250 (763)
346 KOG0458|consensus 98.3 5.7E-06 1.2E-10 90.3 12.5 143 115-259 186-373 (603)
347 PRK10463 hydrogenase nickel in 98.3 9.4E-07 2E-11 90.9 6.1 55 212-266 231-287 (290)
348 KOG0086|consensus 98.3 4.1E-07 8.9E-12 82.6 3.0 55 331-385 10-64 (214)
349 cd00066 G-alpha G protein alph 98.3 1.2E-05 2.6E-10 84.8 13.9 118 153-270 159-313 (317)
350 KOG0461|consensus 98.3 6.5E-06 1.4E-10 84.3 11.1 158 83-270 6-195 (522)
351 KOG0093|consensus 98.2 9.2E-07 2E-11 80.0 4.1 57 328-384 19-75 (193)
352 smart00275 G_alpha G protein a 98.2 2E-05 4.3E-10 83.9 14.5 132 135-270 168-336 (342)
353 KOG1547|consensus 98.0 5.2E-05 1.1E-09 74.4 11.2 130 115-249 55-224 (336)
354 cd04128 Spg1 Spg1p. Spg1p (se 98.0 5.7E-06 1.2E-10 80.0 4.8 53 332-384 2-54 (182)
355 COG0378 HypB Ni2+-binding GTPa 98.0 4.7E-05 1E-09 73.1 10.7 53 215-267 146-200 (202)
356 KOG0097|consensus 98.0 3.9E-06 8.4E-11 75.2 3.0 55 331-385 12-66 (215)
357 KOG0083|consensus 98.0 4E-06 8.7E-11 74.6 3.0 52 334-385 1-53 (192)
358 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 1.3E-05 2.9E-10 74.1 6.6 53 109-165 86-138 (141)
359 KOG2655|consensus 98.0 9.7E-05 2.1E-09 77.7 13.5 133 115-252 30-201 (366)
360 cd01858 NGP_1 NGP-1. Autoanti 98.0 1.8E-05 3.9E-10 74.5 7.4 47 115-165 111-157 (157)
361 COG5019 CDC3 Septin family pro 98.0 5.1E-05 1.1E-09 79.2 11.2 128 115-247 32-200 (373)
362 cd04178 Nucleostemin_like Nucl 97.9 2E-05 4.3E-10 75.6 7.0 47 115-165 126-172 (172)
363 KOG1487|consensus 97.9 2.2E-05 4.8E-10 77.8 6.9 153 107-268 60-281 (358)
364 COG1703 ArgK Putative periplas 97.9 9.1E-05 2E-09 75.5 11.3 107 155-273 144-259 (323)
365 cd04120 Rab12 Rab12 subfamily. 97.9 1.1E-05 2.3E-10 79.6 4.6 52 333-384 3-54 (202)
366 cd04108 Rab36_Rab34 Rab34/Rab3 97.9 1.2E-05 2.7E-10 76.7 4.8 54 331-384 1-54 (170)
367 KOG0468|consensus 97.9 5E-05 1.1E-09 83.7 9.7 107 113-223 135-261 (971)
368 cd04131 Rnd Rnd subfamily. Th 97.9 1.4E-05 3E-10 77.1 4.6 53 331-384 2-54 (178)
369 COG0480 FusA Translation elong 97.8 0.00016 3.5E-09 83.1 13.3 107 115-225 19-142 (697)
370 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.8 1.6E-05 3.4E-10 77.0 4.4 53 331-384 6-58 (182)
371 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.8 1.6E-05 3.4E-10 80.1 4.5 55 329-384 12-66 (232)
372 cd01856 YlqF YlqF. Proteins o 97.8 4.2E-05 9.1E-10 73.1 7.1 47 115-165 124-170 (171)
373 cd04133 Rop_like Rop subfamily 97.8 1.9E-05 4E-10 76.1 4.5 53 331-384 2-54 (176)
374 cd01859 MJ1464 MJ1464. This f 97.8 5.2E-05 1.1E-09 71.2 7.4 47 115-165 110-156 (156)
375 KOG0091|consensus 97.8 3.7E-06 7.9E-11 77.5 -0.7 55 330-384 8-63 (213)
376 COG4108 PrfC Peptide chain rel 97.8 0.0001 2.2E-09 78.2 9.6 125 115-245 21-165 (528)
377 cd01892 Miro2 Miro2 subfamily. 97.8 2.2E-05 4.8E-10 74.8 4.3 54 331-384 5-59 (169)
378 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.8 2.2E-05 4.7E-10 78.5 4.3 53 331-384 2-54 (222)
379 cd04121 Rab40 Rab40 subfamily. 97.8 2.8E-05 6.1E-10 75.7 4.8 55 330-384 6-60 (189)
380 COG1161 Predicted GTPases [Gen 97.7 5.4E-05 1.2E-09 80.0 6.8 48 115-166 141-188 (322)
381 PRK09563 rbgA GTPase YlqF; Rev 97.7 8.3E-05 1.8E-09 77.3 8.2 48 115-166 130-177 (287)
382 KOG2484|consensus 97.7 6.4E-05 1.4E-09 78.9 7.2 83 166-254 134-218 (435)
383 cd01874 Cdc42 Cdc42 subfamily. 97.7 3.2E-05 6.9E-10 74.2 4.5 53 331-384 2-54 (175)
384 cd01875 RhoG RhoG subfamily. 97.7 3.2E-05 7E-10 75.3 4.5 53 331-384 4-56 (191)
385 PF00071 Ras: Ras family; Int 97.7 3.9E-05 8.4E-10 71.9 4.7 54 332-385 1-54 (162)
386 TIGR03596 GTPase_YlqF ribosome 97.7 8.5E-05 1.8E-09 76.8 7.5 47 115-165 127-173 (276)
387 COG0050 TufB GTPases - transla 97.7 0.00015 3.4E-09 73.2 8.7 141 107-251 13-176 (394)
388 cd04117 Rab15 Rab15 subfamily. 97.7 4.6E-05 1E-09 71.8 4.8 54 331-384 1-54 (161)
389 KOG1954|consensus 97.7 0.00034 7.4E-09 72.7 11.2 157 32-225 18-225 (532)
390 cd04122 Rab14 Rab14 subfamily. 97.7 5E-05 1.1E-09 71.8 4.7 54 331-384 3-56 (166)
391 KOG4273|consensus 97.6 0.0003 6.4E-09 69.4 9.9 151 113-267 11-221 (418)
392 cd01855 YqeH YqeH. YqeH is an 97.6 7.9E-05 1.7E-09 72.4 6.0 54 109-165 130-190 (190)
393 PF03308 ArgK: ArgK protein; 97.6 9.1E-05 2E-09 74.5 6.4 102 155-270 122-232 (266)
394 cd04107 Rab32_Rab38 Rab38/Rab3 97.6 5.2E-05 1.1E-09 74.3 4.5 53 332-384 2-55 (201)
395 cd04119 RJL RJL (RabJ-Like) su 97.6 5.8E-05 1.3E-09 70.7 4.6 53 332-384 2-54 (168)
396 cd01867 Rab8_Rab10_Rab13_like 97.6 6E-05 1.3E-09 71.3 4.6 54 331-384 4-57 (167)
397 COG1618 Predicted nucleotide k 97.6 0.0016 3.4E-08 60.9 13.5 146 83-267 4-175 (179)
398 KOG1143|consensus 97.6 0.00032 6.9E-09 72.9 9.6 153 107-263 168-383 (591)
399 COG5258 GTPBP1 GTPase [General 97.6 0.00048 1E-08 72.0 10.7 104 156-263 202-334 (527)
400 cd04102 RabL3 RabL3 (Rab-like3 97.6 6.7E-05 1.5E-09 73.9 4.4 53 332-384 2-59 (202)
401 cd04125 RabA_like RabA-like su 97.6 8E-05 1.7E-09 72.0 4.8 53 332-384 2-54 (188)
402 KOG1424|consensus 97.5 0.00021 4.5E-09 77.4 7.9 72 175-252 171-244 (562)
403 cd01865 Rab3 Rab3 subfamily. 97.5 9.1E-05 2E-09 69.9 4.8 54 331-384 2-55 (165)
404 PLN03071 GTP-binding nuclear p 97.5 8.5E-05 1.8E-09 74.1 4.8 54 331-384 14-67 (219)
405 PLN00023 GTP-binding protein; 97.5 8.8E-05 1.9E-09 77.5 4.7 56 329-384 20-88 (334)
406 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.5 8.8E-05 1.9E-09 70.9 4.4 53 331-384 3-55 (172)
407 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.5 0.00011 2.4E-09 69.2 4.8 54 331-384 3-56 (166)
408 KOG0448|consensus 97.5 0.001 2.2E-08 74.4 12.6 92 156-251 207-309 (749)
409 cd04109 Rab28 Rab28 subfamily. 97.5 0.0001 2.2E-09 73.1 4.5 53 332-384 2-55 (215)
410 cd04118 Rab24 Rab24 subfamily. 97.5 0.00011 2.4E-09 71.2 4.6 53 332-384 2-55 (193)
411 PLN03110 Rab GTPase; Provision 97.5 0.00012 2.6E-09 72.8 4.9 54 331-384 13-66 (216)
412 cd04142 RRP22 RRP22 subfamily. 97.5 8.9E-05 1.9E-09 72.8 3.9 52 332-383 2-53 (198)
413 KOG0081|consensus 97.5 5.4E-05 1.2E-09 69.5 2.2 42 333-374 12-53 (219)
414 KOG0088|consensus 97.5 2.1E-05 4.5E-10 72.2 -0.6 58 327-384 10-67 (218)
415 KOG0395|consensus 97.5 0.00016 3.5E-09 70.8 5.5 53 332-385 5-57 (196)
416 cd01851 GBP Guanylate-binding 97.5 0.00084 1.8E-08 67.3 10.7 82 110-192 11-105 (224)
417 cd04136 Rap_like Rap-like subf 97.5 0.00011 2.3E-09 68.8 4.0 53 331-384 2-54 (163)
418 cd04111 Rab39 Rab39 subfamily. 97.4 0.00012 2.7E-09 72.5 4.4 54 331-384 3-57 (211)
419 cd01849 YlqF_related_GTPase Yl 97.4 0.00036 7.8E-09 65.5 7.0 47 115-165 109-155 (155)
420 KOG1424|consensus 97.4 0.0001 2.2E-09 79.7 3.5 51 112-166 320-370 (562)
421 cd04116 Rab9 Rab9 subfamily. 97.4 0.00018 3.8E-09 68.1 4.9 53 332-384 7-59 (170)
422 cd01868 Rab11_like Rab11-like. 97.4 0.00018 3.9E-09 67.6 4.8 53 332-384 5-57 (165)
423 cd04115 Rab33B_Rab33A Rab33B/R 97.4 0.00018 4E-09 68.3 4.8 54 331-384 3-56 (170)
424 cd04106 Rab23_lke Rab23-like s 97.4 0.00017 3.7E-09 67.4 4.5 53 332-384 2-56 (162)
425 cd01871 Rac1_like Rac1-like su 97.4 0.00017 3.8E-09 69.0 4.5 53 331-384 2-54 (174)
426 cd04110 Rab35 Rab35 subfamily. 97.4 0.00017 3.8E-09 70.5 4.6 54 331-384 7-60 (199)
427 PTZ00369 Ras-like protein; Pro 97.4 0.00017 3.6E-09 70.0 4.3 54 330-384 5-58 (189)
428 cd04138 H_N_K_Ras_like H-Ras/N 97.4 0.00017 3.7E-09 67.0 4.2 51 332-383 3-53 (162)
429 cd04143 Rhes_like Rhes_like su 97.4 0.00015 3.2E-09 73.8 4.0 52 332-384 2-53 (247)
430 cd01864 Rab19 Rab19 subfamily. 97.4 0.0002 4.4E-09 67.4 4.7 55 330-384 3-57 (165)
431 cd04175 Rap1 Rap1 subgroup. T 97.4 0.00018 4E-09 67.6 4.3 53 331-384 2-54 (164)
432 KOG0460|consensus 97.3 0.0025 5.4E-08 65.9 12.3 148 101-251 49-218 (449)
433 cd04176 Rap2 Rap2 subgroup. T 97.3 0.0002 4.3E-09 67.2 4.2 53 331-384 2-54 (163)
434 cd00877 Ran Ran (Ras-related n 97.3 0.00024 5.2E-09 67.4 4.7 54 331-384 1-54 (166)
435 PLN03108 Rab family protein; P 97.3 0.00023 4.9E-09 70.5 4.7 53 331-383 7-59 (210)
436 TIGR00092 GTP-binding protein 97.3 0.00077 1.7E-08 71.8 8.5 74 114-189 10-108 (368)
437 cd01860 Rab5_related Rab5-rela 97.3 0.00029 6.4E-09 65.9 4.8 54 331-384 2-55 (163)
438 KOG1191|consensus 97.3 0.00034 7.4E-09 75.5 5.6 60 314-389 268-328 (531)
439 cd01725 LSm2 The eukaryotic Sm 97.3 0.0022 4.8E-08 53.4 9.3 72 452-526 2-73 (81)
440 cd01861 Rab6 Rab6 subfamily. 97.3 0.00031 6.8E-09 65.5 4.7 53 332-384 2-54 (161)
441 cd04134 Rho3 Rho3 subfamily. 97.3 0.00027 6E-09 68.5 4.4 52 332-384 2-53 (189)
442 cd01862 Rab7 Rab7 subfamily. 97.2 0.00035 7.5E-09 65.9 4.8 52 332-383 2-53 (172)
443 cd04127 Rab27A Rab27a subfamil 97.2 0.00031 6.6E-09 67.1 4.4 45 331-375 5-49 (180)
444 cd03110 Fer4_NifH_child This p 97.2 0.0034 7.3E-08 60.2 11.6 86 153-247 91-176 (179)
445 cd01870 RhoA_like RhoA-like su 97.2 0.00032 6.9E-09 66.6 4.3 53 331-384 2-54 (175)
446 TIGR01425 SRP54_euk signal rec 97.2 0.0012 2.5E-08 72.0 9.1 94 154-259 182-281 (429)
447 PF12701 LSM14: Scd6-like Sm d 97.2 0.0018 3.9E-08 55.5 8.4 73 456-528 3-80 (96)
448 PRK12288 GTPase RsgA; Reviewed 97.2 0.00035 7.6E-09 74.5 4.8 58 108-168 207-270 (347)
449 smart00176 RAN Ran (Ras-relate 97.2 0.00032 7E-09 69.0 4.0 49 336-384 1-49 (200)
450 cd01733 LSm10 The eukaryotic S 97.2 0.0032 6.9E-08 52.1 9.2 69 451-524 9-77 (78)
451 cd01866 Rab2 Rab2 subfamily. 97.2 0.00046 9.9E-09 65.4 4.8 55 331-385 5-59 (168)
452 PTZ00132 GTP-binding nuclear p 97.2 0.00051 1.1E-08 68.0 5.3 55 330-384 9-63 (215)
453 COG5192 BMS1 GTP-binding prote 97.2 0.0017 3.7E-08 70.7 9.4 133 107-252 70-210 (1077)
454 PRK10416 signal recognition pa 97.1 0.00071 1.5E-08 71.3 6.4 97 153-261 195-303 (318)
455 cd04144 Ras2 Ras2 subfamily. 97.1 0.00033 7.1E-09 68.0 3.6 51 333-384 2-52 (190)
456 cd04113 Rab4 Rab4 subfamily. 97.1 0.0005 1.1E-08 64.3 4.7 54 332-385 2-55 (161)
457 KOG0393|consensus 97.1 0.00059 1.3E-08 66.2 4.9 53 331-384 5-58 (198)
458 cd04148 RGK RGK subfamily. Th 97.1 0.00045 9.8E-09 69.0 4.3 53 332-384 2-55 (221)
459 cd04124 RabL2 RabL2 subfamily. 97.1 0.0006 1.3E-08 64.1 4.7 53 332-384 2-54 (161)
460 cd04112 Rab26 Rab26 subfamily. 97.1 0.00055 1.2E-08 66.5 4.6 53 332-384 2-55 (191)
461 KOG1491|consensus 97.1 0.0019 4E-08 66.9 8.4 78 113-190 27-126 (391)
462 KOG2423|consensus 97.1 0.0018 3.9E-08 68.0 8.2 84 175-263 210-295 (572)
463 cd04145 M_R_Ras_like M-Ras/R-R 97.1 0.00064 1.4E-08 63.5 4.5 52 331-383 3-54 (164)
464 KOG2485|consensus 97.0 0.0019 4.2E-08 66.2 8.1 174 161-391 28-210 (335)
465 smart00175 RAB Rab subfamily o 97.0 0.00072 1.6E-08 63.1 4.8 53 332-384 2-54 (164)
466 smart00173 RAS Ras subfamily o 97.0 0.00054 1.2E-08 64.2 3.9 51 332-383 2-52 (164)
467 PRK13796 GTPase YqeH; Provisio 97.0 0.00085 1.8E-08 72.2 5.9 58 106-166 160-221 (365)
468 PRK14974 cell division protein 97.0 0.0005 1.1E-08 72.8 3.8 95 155-261 223-323 (336)
469 TIGR00157 ribosome small subun 97.0 0.00069 1.5E-08 68.8 4.6 61 104-168 118-184 (245)
470 cd04101 RabL4 RabL4 (Rab-like4 97.0 0.00071 1.5E-08 63.4 4.4 52 332-383 2-56 (164)
471 TIGR03597 GTPase_YqeH ribosome 97.0 0.0012 2.7E-08 70.9 6.7 57 108-167 156-216 (360)
472 KOG2484|consensus 97.0 0.00035 7.6E-09 73.5 2.4 56 106-165 252-307 (435)
473 TIGR03348 VI_IcmF type VI secr 97.0 0.0018 3.9E-08 79.8 8.7 106 115-225 120-257 (1169)
474 cd04140 ARHI_like ARHI subfami 97.0 0.00074 1.6E-08 63.7 4.3 54 331-385 2-55 (165)
475 cd04177 RSR1 RSR1 subgroup. R 97.0 0.00074 1.6E-08 63.9 4.2 52 332-384 3-54 (168)
476 PRK12289 GTPase RsgA; Reviewed 97.0 0.0012 2.6E-08 70.5 6.1 56 108-167 174-236 (352)
477 cd04130 Wrch_1 Wrch-1 subfamil 97.0 0.00083 1.8E-08 63.9 4.5 52 332-384 2-53 (173)
478 cd04103 Centaurin_gamma Centau 97.0 0.00078 1.7E-08 63.5 4.1 51 332-384 2-52 (158)
479 cd00600 Sm_like The eukaryotic 96.9 0.0034 7.4E-08 49.4 7.0 62 456-522 1-62 (63)
480 COG1100 GTPase SAR1 and relate 96.9 0.00083 1.8E-08 66.4 4.2 53 331-383 6-58 (219)
481 cd01863 Rab18 Rab18 subfamily. 96.9 0.001 2.3E-08 62.0 4.6 52 332-383 2-53 (161)
482 cd03112 CobW_like The function 96.9 0.0019 4.2E-08 61.0 6.4 63 155-223 87-158 (158)
483 cd01724 Sm_D1 The eukaryotic S 96.9 0.0072 1.6E-07 51.4 9.1 71 451-526 1-71 (90)
484 cd04135 Tc10 TC10 subfamily. 96.9 0.001 2.2E-08 63.0 4.5 52 332-384 2-53 (174)
485 KOG4252|consensus 96.9 3.3E-05 7.2E-10 72.3 -5.6 52 332-383 22-73 (246)
486 COG0523 Putative GTPases (G3E 96.9 0.012 2.6E-07 62.1 12.6 75 178-260 116-193 (323)
487 PF03266 NTPase_1: NTPase; In 96.9 0.0058 1.3E-07 58.4 9.5 127 115-256 8-163 (168)
488 cd04132 Rho4_like Rho4-like su 96.9 0.00095 2.1E-08 64.3 4.0 52 332-384 2-54 (187)
489 cd04114 Rab30 Rab30 subfamily. 96.9 0.0016 3.4E-08 61.4 5.3 54 330-383 7-60 (169)
490 smart00174 RHO Rho (Ras homolo 96.8 0.001 2.2E-08 63.0 4.0 50 334-384 2-51 (174)
491 cd01873 RhoBTB RhoBTB subfamil 96.8 0.001 2.2E-08 65.1 4.1 54 331-384 3-71 (195)
492 KOG0463|consensus 96.8 0.0029 6.2E-08 66.0 7.4 158 100-262 127-352 (641)
493 cd04146 RERG_RasL11_like RERG/ 96.8 0.00086 1.9E-08 63.1 3.1 51 333-384 2-52 (165)
494 PF01423 LSM: LSM domain ; In 96.8 0.0058 1.3E-07 48.8 7.4 65 455-523 2-66 (67)
495 KOG3859|consensus 96.8 0.0024 5.1E-08 64.2 6.1 114 85-225 43-190 (406)
496 cd01721 Sm_D3 The eukaryotic S 96.8 0.0096 2.1E-07 48.2 8.5 68 454-526 3-70 (70)
497 cd01736 LSm14_N LSm14 (also kn 96.8 0.0056 1.2E-07 49.4 6.9 66 457-522 2-73 (74)
498 PLN03118 Rab family protein; P 96.7 0.0016 3.5E-08 64.3 4.6 51 332-383 16-66 (211)
499 TIGR00064 ftsY signal recognit 96.7 0.0043 9.2E-08 64.0 7.8 96 154-261 154-261 (272)
500 PRK14721 flhF flagellar biosyn 96.7 0.005 1.1E-07 67.0 8.6 94 155-260 270-370 (420)
No 1
>KOG0084|consensus
Probab=100.00 E-value=4.6e-34 Score=267.67 Aligned_cols=167 Identities=38% Similarity=0.667 Sum_probs=161.5
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+|+|+ +|||||||+.||..+.|.+.+..|+|+++..+.+.++++.++++||||
T Consensus 8 ylFKiiliGd----------------------s~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDT 65 (205)
T KOG0084|consen 8 YLFKIILIGD----------------------SGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDT 65 (205)
T ss_pred eEEEEEEECC----------------------CCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeec
Confidence 3489999999 999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
+|+|||+.+...||++|++||+|||+++.+||..+..|+.++.++...++|.+|||||+|+.+.+.++.++++.|+.+++
T Consensus 66 AGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~ 145 (205)
T KOG0084|consen 66 AGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELG 145 (205)
T ss_pred cccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred Ce-EEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 243 GT-YYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 243 ~~-~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
++ |+|+|||++.||++.|..|...+....
T Consensus 146 ~~~f~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 146 IPIFLETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred CcceeecccCCccCHHHHHHHHHHHHHHhc
Confidence 98 999999999999999999999887654
No 2
>KOG0092|consensus
Probab=100.00 E-value=8.9e-33 Score=258.07 Aligned_cols=168 Identities=47% Similarity=0.826 Sum_probs=160.3
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ .+||||||+-||..+.|.+...+|+|.-|.++.+.++...++|.|||
T Consensus 3 ~~~~KvvLLG~----------------------~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWD 60 (200)
T KOG0092|consen 3 TREFKVVLLGD----------------------SGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWD 60 (200)
T ss_pred cceEEEEEECC----------------------CCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEE
Confidence 34679999999 99999999999999999988899999999999999999999999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
|+|+|+|..+.+.||++++++|+|||+++.+||..++.|+.++.+..+.++-+.|||||+||.+.+++..+++..+|...
T Consensus 61 TAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~ 140 (200)
T KOG0092|consen 61 TAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQ 140 (200)
T ss_pred cCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
|+.|+|+|||+|.||++||..|.+.+....
T Consensus 141 gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 141 GLLFFETSAKTGENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred CCEEEEEecccccCHHHHHHHHHHhccCcc
Confidence 999999999999999999999999887644
No 3
>KOG0098|consensus
Probab=100.00 E-value=2e-32 Score=253.33 Aligned_cols=172 Identities=37% Similarity=0.660 Sum_probs=164.9
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+|++++|+ .|||||+|+.||+..+|.+.+..|+|+++..+.+.++++.++++|||
T Consensus 4 ~~~fKyIiiGd----------------------~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwD 61 (216)
T KOG0098|consen 4 AYLFKYIIIGD----------------------TGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWD 61 (216)
T ss_pred cceEEEEEECC----------------------CCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEe
Confidence 45689999999 99999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
|+|++.|++.++.||+.+.++|||||++.++||..+..||..++++...++.++|+|||+||...++++.+|...||+++
T Consensus 62 taGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~eh 141 (216)
T KOG0098|consen 62 TAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREH 141 (216)
T ss_pred cCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999998778899999999999999999999999999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHHhhhccc
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLICLSQESL 275 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~~~~~~~ 275 (617)
|+.++++||++++||++.|..+...+..+.+.+.
T Consensus 142 gLifmETSakt~~~VEEaF~nta~~Iy~~~q~g~ 175 (216)
T KOG0098|consen 142 GLIFMETSAKTAENVEEAFINTAKEIYRKIQDGV 175 (216)
T ss_pred CceeehhhhhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999998876544
No 4
>KOG0078|consensus
Probab=100.00 E-value=5.1e-32 Score=257.75 Aligned_cols=167 Identities=38% Similarity=0.677 Sum_probs=161.7
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
.-+||+++|+ +|||||+|+.+|..+.|...+..|+|++|..+.+..++..+.+++|||
T Consensus 11 ~~~kvlliGD----------------------s~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDt 68 (207)
T KOG0078|consen 11 YLFKLLLIGD----------------------SGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDT 68 (207)
T ss_pred eEEEEEEECC----------------------CCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEc
Confidence 3479999999 999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
+|+++|..+...|++.|+++++|||+++..||+++..|+..|.++.+..+|++|||||+|+..+++++.+.++++|.++|
T Consensus 69 aGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G 148 (207)
T KOG0078|consen 69 AGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYG 148 (207)
T ss_pred ccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 243 GTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
+.|+|+||++|.||++.|-.|++.+..+.
T Consensus 149 ~~F~EtSAk~~~NI~eaF~~La~~i~~k~ 177 (207)
T KOG0078|consen 149 IKFFETSAKTNFNIEEAFLSLARDILQKL 177 (207)
T ss_pred CeEEEccccCCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999998654
No 5
>KOG0094|consensus
Probab=99.98 E-value=5.3e-32 Score=252.55 Aligned_cols=165 Identities=36% Similarity=0.668 Sum_probs=156.8
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
..||+++|+ .+|||||||+||+.+.|...|.+|+|++|..+.+.+.+..++|++|||+
T Consensus 22 ~~KlVflGd----------------------qsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTA 79 (221)
T KOG0094|consen 22 KYKLVFLGD----------------------QSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 79 (221)
T ss_pred EEEEEEEcc----------------------CccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecc
Confidence 369999999 9999999999999999999999999999999999999999999999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCC-CCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE-PLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~-~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
|||+|+.+++.|++++.++|+|||+++..||+...+|+..+...... .+-|+|||||.||.+.+++..++....+++++
T Consensus 80 GQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~ 159 (221)
T KOG0094|consen 80 GQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELN 159 (221)
T ss_pred cHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999887654 47889999999999999999999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 243 GTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
..|+++||+.|.||.++|..|...+...
T Consensus 160 a~f~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 160 AEFIETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred cEEEEecccCCCCHHHHHHHHHHhccCc
Confidence 9999999999999999999988877654
No 6
>KOG0080|consensus
Probab=99.97 E-value=8.9e-31 Score=236.16 Aligned_cols=166 Identities=34% Similarity=0.638 Sum_probs=156.7
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+-+|+.+.|......|+|++|..+.+.+++..+++.||||
T Consensus 10 ~t~KiLlIGe----------------------SGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDT 67 (209)
T KOG0080|consen 10 TTFKILLIGE----------------------SGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDT 67 (209)
T ss_pred eeEEEEEEcc----------------------CCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEec
Confidence 3589999999 999999999999999998888888999999999999999999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
+|+|+|+.+.+.||+.+.++|+|||++.+++|..++.|+.++..+.. .++-.++||||+|...++.++.++..+|++++
T Consensus 68 AGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h 147 (209)
T KOG0080|consen 68 AGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKH 147 (209)
T ss_pred cchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999988764 45677899999999888999999999999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
++-|+|+||++.+||+..|++++.+|.+-
T Consensus 148 ~~LFiE~SAkt~~~V~~~FeelveKIi~t 176 (209)
T KOG0080|consen 148 RCLFIECSAKTRENVQCCFEELVEKIIET 176 (209)
T ss_pred CcEEEEcchhhhccHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988753
No 7
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=2.2e-29 Score=247.48 Aligned_cols=156 Identities=34% Similarity=0.664 Sum_probs=145.2
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
.|||||||+++|+.+.|...+.+|+|.++..+.+.+++..+.++||||+|+++|..++..|++++|++|+|||++++.||
T Consensus 9 ~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf 88 (202)
T cd04120 9 RGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETF 88 (202)
T ss_pred CCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHH
Confidence 99999999999999999989999999999888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhc-CCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSI-GGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~-g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
+.+..|+..+.+....++|++|||||+||..++++..+++.++++++ ++.|+++||++|.||+++|++|++.+...
T Consensus 89 ~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 89 DDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 165 (202)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999888776667899999999999878888888888899875 78999999999999999999999887653
No 8
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.97 E-value=3.4e-29 Score=243.80 Aligned_cols=164 Identities=30% Similarity=0.492 Sum_probs=152.7
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
.+||+++|+ .|||||||+.+|..+.+...+.++++.++....+.+++..+.+++|||+
T Consensus 6 ~~KivviG~----------------------~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~ 63 (189)
T cd04121 6 LLKFLLVGD----------------------SDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTS 63 (189)
T ss_pred eeEEEEECC----------------------CCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCC
Confidence 479999999 9999999999999999888888999999888888889999999999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG 243 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~ 243 (617)
|+++|..+++.+++++|++|||||++++.||+.+..|+.++.+..+ .+|+||||||+||...+.+..+++..+++.+++
T Consensus 64 G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~ 142 (189)
T cd04121 64 GQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRLHLAFKRQVATEQAQAYAERNGM 142 (189)
T ss_pred CcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccchhccCCCHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999987664 589999999999987788889999999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 244 TYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 244 ~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
+|++|||++|.||+++|++|++.+...
T Consensus 143 ~~~e~SAk~g~~V~~~F~~l~~~i~~~ 169 (189)
T cd04121 143 TFFEVSPLCNFNITESFTELARIVLMR 169 (189)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999877653
No 9
>KOG0394|consensus
Probab=99.97 E-value=5.9e-30 Score=236.60 Aligned_cols=166 Identities=38% Similarity=0.695 Sum_probs=154.1
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
-+||+|+|+ +|||||||+|+|...+|...+..|+|.+|.++.+.+++..+.++||||+
T Consensus 9 lLKViiLGD----------------------sGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTA 66 (210)
T KOG0394|consen 9 LLKVIILGD----------------------SGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTA 66 (210)
T ss_pred ceEEEEeCC----------------------CCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecc
Confidence 379999999 9999999999999999999999999999999999999999999999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC----CCCeEEEEEECCCCCC--ccccCHHHHHHH
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD----EPLVLCVVGNKTDLES--SREVNREEAFHY 237 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~----~~iPvIlVgNK~DL~~--~~~v~~~e~~~~ 237 (617)
|+|+|.++.-.||+.+|++++|||+.++.||+.++.|-.++..... ...|+||+|||+|+.. .++++.+.++.|
T Consensus 67 GQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~W 146 (210)
T KOG0394|consen 67 GQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTW 146 (210)
T ss_pred cHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHH
Confidence 9999999999999999999999999999999999999999876553 4589999999999965 388999999999
Q ss_pred HHhcC-CeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 238 SKSIG-GTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 238 ~~~~g-~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
|...| ++|||+|||...||++.|+.+.+..+...
T Consensus 147 C~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 147 CKSKGNIPYFETSAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred HHhcCCceeEEecccccccHHHHHHHHHHHHHhcc
Confidence 98876 69999999999999999999998877644
No 10
>KOG0087|consensus
Probab=99.97 E-value=1.4e-29 Score=239.86 Aligned_cols=168 Identities=38% Similarity=0.644 Sum_probs=161.6
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
.-+||+++|+ ++||||-|+.||..+.|.....+|+|+++.++.+.++++.++.+||||
T Consensus 13 ylFKiVliGD----------------------S~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDT 70 (222)
T KOG0087|consen 13 YLFKIVLIGD----------------------SAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDT 70 (222)
T ss_pred eEEEEEEeCC----------------------CccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecc
Confidence 3489999999 999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
+|+|+|+.+...||+.+-++++|||++...+|+.+.+||.+++.+...+++++|||||+||...+.+..+++..+++..+
T Consensus 71 AGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~ 150 (222)
T KOG0087|consen 71 AGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEG 150 (222)
T ss_pred cchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcC
Confidence 99999999999999999999999999999999999999999999998899999999999999889999999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHHhhh
Q psy3029 243 GTYYETSALQDQGIEDVFLNVSKGLICLSQ 272 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I~~~l~~~~~ 272 (617)
+.|+++||..+.||++.|+.++..|.....
T Consensus 151 l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs 180 (222)
T KOG0087|consen 151 LFFLETSALDATNVEKAFERVLTEIYKIVS 180 (222)
T ss_pred ceEEEecccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887653
No 11
>KOG0093|consensus
Probab=99.97 E-value=1.3e-29 Score=225.32 Aligned_cols=167 Identities=31% Similarity=0.583 Sum_probs=159.0
Q ss_pred eEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCC
Q psy3029 85 IKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAG 164 (617)
Q Consensus 85 ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G 164 (617)
+|+.|+|+ ..||||||+.|++++.|...+..|+|+++..+++.-..+.+++++|||+|
T Consensus 22 fKlliiGn----------------------ssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTag 79 (193)
T KOG0093|consen 22 FKLLIIGN----------------------SSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAG 79 (193)
T ss_pred eeEEEEcc----------------------CCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEeccc
Confidence 59999999 99999999999999999999999999999999888788899999999999
Q ss_pred cccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCe
Q psy3029 165 QERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGT 244 (617)
Q Consensus 165 ~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~ 244 (617)
+|+|+.+.-.|++.++++|++||+++.+||..++.|.-.|+.+.-.++|||||+||||+.+++.++.+..+.++.++|+.
T Consensus 80 qEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfe 159 (193)
T KOG0093|consen 80 QERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFE 159 (193)
T ss_pred chhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChH
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHhhhc
Q psy3029 245 YYETSALQDQGIEDVFLNVSKGLICLSQE 273 (617)
Q Consensus 245 ~~evSAktg~gI~eLf~~I~~~l~~~~~~ 273 (617)
|||+|||.+.||+++|+.++..|-.+..+
T Consensus 160 fFEtSaK~NinVk~~Fe~lv~~Ic~kmse 188 (193)
T KOG0093|consen 160 FFETSAKENINVKQVFERLVDIICDKMSE 188 (193)
T ss_pred HhhhcccccccHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999888765533
No 12
>KOG0086|consensus
Probab=99.96 E-value=1.5e-29 Score=226.23 Aligned_cols=161 Identities=39% Similarity=0.644 Sum_probs=155.0
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
.|.|||+|+++|+..+|......|+|++|..+.+++.++.++++||||+|+++|+...+.||+.+.+.++|||++++++|
T Consensus 18 aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsrdsf 97 (214)
T KOG0086|consen 18 AGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSF 97 (214)
T ss_pred CCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhhhcc
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQES 274 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~~~~~ 274 (617)
+.+..|+..++...+..+.||++|||.||..+++++..++..|+.+..+.+.|+||++|+||++.|-...+.|..+.+.+
T Consensus 98 naLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE~G 177 (214)
T KOG0086|consen 98 NALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIESG 177 (214)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988876554
Q ss_pred c
Q psy3029 275 L 275 (617)
Q Consensus 275 ~ 275 (617)
+
T Consensus 178 E 178 (214)
T KOG0086|consen 178 E 178 (214)
T ss_pred C
Confidence 4
No 13
>KOG0079|consensus
Probab=99.96 E-value=8.8e-30 Score=226.64 Aligned_cols=156 Identities=36% Similarity=0.677 Sum_probs=150.0
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||+|+.+|..+.|...|..|+|+++..+++.+++..++++||||+|+|+|..+...|++..+++++|||+++.+||
T Consensus 17 sgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF 96 (198)
T KOG0079|consen 17 SGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESF 96 (198)
T ss_pred CcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
.++.+||.+++..++ .+|-++||||.|+.+.+.+..++++.|+...|+.+||+|||.++|++..|..|.+++....
T Consensus 97 ~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 97 NNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred HhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHH
Confidence 999999999999887 4799999999999988889999999999999999999999999999999999999887654
No 14
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.96 E-value=1.8e-28 Score=236.03 Aligned_cols=159 Identities=33% Similarity=0.569 Sum_probs=144.1
Q ss_pred eEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCC
Q psy3029 85 IKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAG 164 (617)
Q Consensus 85 ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G 164 (617)
+||+++|+ +|||||||+.+|+.+.|...+.||++..+ .+.+.+++..+++.||||+|
T Consensus 2 ~kivv~G~----------------------~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G 58 (176)
T cd04133 2 IKCVTVGD----------------------GAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAG 58 (176)
T ss_pred eEEEEECC----------------------CCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCC
Confidence 58888888 99999999999999999989999999775 45677888899999999999
Q ss_pred cccccccchhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCeEEEEEECCCCCCcc----------ccCHHH
Q psy3029 165 QERFRSMAPMYYRNANAALLVFDITQYHSFAAI-KTWVKELKRNVDEPLVLCVVGNKTDLESSR----------EVNREE 233 (617)
Q Consensus 165 ~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l-~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~----------~v~~~e 233 (617)
+++|..++..+++++|++|+|||++++.||+.+ ..|+..+.+..+ ++|++|||||+||.+++ .+..++
T Consensus 59 ~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~ 137 (176)
T cd04133 59 QEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQ 137 (176)
T ss_pred CccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHH
Confidence 999999999999999999999999999999998 689999987654 58999999999996543 478889
Q ss_pred HHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 234 AFHYSKSIGG-TYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 234 ~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~~l 267 (617)
+.++++.+++ .|+||||++|.||+++|+.+++.+
T Consensus 138 ~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 138 GEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 9999999998 699999999999999999999865
No 15
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.96 E-value=1.8e-28 Score=237.45 Aligned_cols=162 Identities=27% Similarity=0.542 Sum_probs=146.4
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|+.+.|...+.||++..+ .+.+.+++..+.++||||
T Consensus 4 ~~~KivvvGd----------------------~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDt 60 (182)
T cd04172 4 VKCKIVVVGD----------------------SQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDT 60 (182)
T ss_pred ceEEEEEECC----------------------CCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEEC
Confidence 4579999999 99999999999999999999999998765 467788999999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCeEEEEEECCCCCC------------cccc
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAI-KTWVKELKRNVDEPLVLCVVGNKTDLES------------SREV 229 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l-~~~l~~i~~~~~~~iPvIlVgNK~DL~~------------~~~v 229 (617)
+|+++|..+++.+++++|++|+|||++++.||+.+ ..|+..+.+..+ .+|++|||||+||.. ++.+
T Consensus 61 aG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v 139 (182)
T cd04172 61 SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPV 139 (182)
T ss_pred CCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCC
Confidence 99999999999999999999999999999999997 799999988765 589999999999864 3458
Q ss_pred CHHHHHHHHHhcCC-eEEEEcCCCCCC-HHHHHHHHHHHHH
Q psy3029 230 NREEAFHYSKSIGG-TYYETSALQDQG-IEDVFLNVSKGLI 268 (617)
Q Consensus 230 ~~~e~~~~~~~~g~-~~~evSAktg~g-I~eLf~~I~~~l~ 268 (617)
..+++.++++++++ +|+||||++|.| |+++|..+++.+.
T Consensus 140 ~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 140 SYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 88999999999996 999999999998 9999999887543
No 16
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.96 E-value=4e-28 Score=230.65 Aligned_cols=154 Identities=38% Similarity=0.681 Sum_probs=143.3
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+.+.|...+.+|++.++..+.+.+++..+.+.+|||+|++++..+++.+++++|++|+|||++++.+|
T Consensus 11 ~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~ 90 (166)
T cd04122 11 MGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTY 90 (166)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHH
Confidence 99999999999999999888889999998888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
+.+..|+..+.......+|++||+||+|+..++.+..+++..+++..+++++++||++|.||+++|..++..+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~ 164 (166)
T cd04122 91 NHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIY 164 (166)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999987766566899999999999887888888899999999999999999999999999999988774
No 17
>KOG0091|consensus
Probab=99.96 E-value=6.6e-29 Score=224.68 Aligned_cols=168 Identities=38% Similarity=0.622 Sum_probs=155.9
Q ss_pred eEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEE-CCeEEEEEEEecC
Q psy3029 85 IKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINV-GENKVKLQVWDTA 163 (617)
Q Consensus 85 ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~-~~~~~~l~i~Dt~ 163 (617)
++++++|+ +-||||||+..|+.++|.+...||+|++++.+.+.+ ++..+++++|||+
T Consensus 9 frlivigd----------------------stvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdta 66 (213)
T KOG0091|consen 9 FRLIVIGD----------------------STVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTA 66 (213)
T ss_pred EEEEEEcC----------------------CcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeecc
Confidence 68889999 999999999999999999999999999999888777 5678999999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC--CCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD--EPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~--~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
|+++|+.+.+.||+|+-++++|||+++++||+.+..|+.+...+.. .++.+.|||+|+||..+++++.++++.+++.+
T Consensus 67 gqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~h 146 (213)
T KOG0091|consen 67 GQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASH 146 (213)
T ss_pred chHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999877653 45567899999999999999999999999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHHhhhcc
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLICLSQES 274 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~~~~~~ 274 (617)
|+.|+|+||++|.||++.|..|.+.+......+
T Consensus 147 gM~FVETSak~g~NVeEAF~mlaqeIf~~i~qG 179 (213)
T KOG0091|consen 147 GMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQG 179 (213)
T ss_pred CceEEEecccCCCcHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999998876553
No 18
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=4.2e-28 Score=234.02 Aligned_cols=160 Identities=26% Similarity=0.538 Sum_probs=144.1
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
++||+++|+ +|||||||+++|+++.|...+.||++..+ .+.+.+++..+.+++|||+
T Consensus 1 ~~Kiv~vG~----------------------~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~ 57 (178)
T cd04131 1 RCKIVVVGD----------------------VQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTS 57 (178)
T ss_pred CeEEEEECC----------------------CCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECC
Confidence 468999999 99999999999999999999999998775 4677888999999999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCeEEEEEECCCCCC------------ccccC
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAI-KTWVKELKRNVDEPLVLCVVGNKTDLES------------SREVN 230 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l-~~~l~~i~~~~~~~iPvIlVgNK~DL~~------------~~~v~ 230 (617)
|+++|..+.+.+++++|++|+|||++++.||+.+ ..|+..+.+..+ .+|++|||||+||.. .+.+.
T Consensus 58 G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~ 136 (178)
T cd04131 58 GSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVS 136 (178)
T ss_pred CchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCC
Confidence 9999999999999999999999999999999996 799999988765 589999999999954 24588
Q ss_pred HHHHHHHHHhcCC-eEEEEcCCCCCC-HHHHHHHHHHHH
Q psy3029 231 REEAFHYSKSIGG-TYYETSALQDQG-IEDVFLNVSKGL 267 (617)
Q Consensus 231 ~~e~~~~~~~~g~-~~~evSAktg~g-I~eLf~~I~~~l 267 (617)
.+++.++++++++ +|+||||++|+| |+++|..+++..
T Consensus 137 ~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 137 YEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMAC 175 (178)
T ss_pred HHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHH
Confidence 8999999999997 899999999995 999999998854
No 19
>KOG0088|consensus
Probab=99.96 E-value=5.6e-29 Score=223.84 Aligned_cols=168 Identities=45% Similarity=0.739 Sum_probs=159.8
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
.-++||+++|. .-||||||+-||+.++|......|+...|..+.+++.+....+.|||
T Consensus 11 s~~FK~VLLGE----------------------GCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWD 68 (218)
T KOG0088|consen 11 SFKFKIVLLGE----------------------GCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWD 68 (218)
T ss_pred ceeeEEEEEcC----------------------CccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeee
Confidence 44689999999 89999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
|+|+++|..+-+.||+.++++|+|||++|++||+.+..|..+++......+.++|||||+||.+++.++.+++..+++.-
T Consensus 69 TAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesv 148 (218)
T KOG0088|consen 69 TAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESV 148 (218)
T ss_pred ccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
|..|+++||+.+.||.++|+.|...+.+..
T Consensus 149 GA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 149 GALYMETSAKDNVGISELFESLTAKMIEHS 178 (218)
T ss_pred chhheecccccccCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999887765
No 20
>KOG0097|consensus
Probab=99.96 E-value=5.8e-28 Score=213.31 Aligned_cols=169 Identities=38% Similarity=0.640 Sum_probs=160.5
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
-+|.+|+|+ -|||||+|+.+|...+|.+....|+|++|.++.+.+.+..++++||||+
T Consensus 11 ifkyiiigd----------------------mgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdta 68 (215)
T KOG0097|consen 11 IFKYIIIGD----------------------MGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 68 (215)
T ss_pred eEEEEEEcc----------------------ccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecc
Confidence 479999999 9999999999999999999999999999999999999999999999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG 243 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~ 243 (617)
|+++|+...+.|++.+.+.+.|||++.+.++..+..|+...+.....+..+++++||.||..++.++.+++.+|+++.|+
T Consensus 69 gqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl 148 (215)
T KOG0097|consen 69 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGL 148 (215)
T ss_pred cHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCe
Confidence 99999999999999999999999999999999999999998888777788999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHHHhhhcc
Q psy3029 244 TYYETSALQDQGIEDVFLNVSKGLICLSQES 274 (617)
Q Consensus 244 ~~~evSAktg~gI~eLf~~I~~~l~~~~~~~ 274 (617)
.|+++||++|.||++.|-+..+++....+++
T Consensus 149 ~fle~saktg~nvedafle~akkiyqniqdg 179 (215)
T KOG0097|consen 149 MFLEASAKTGQNVEDAFLETAKKIYQNIQDG 179 (215)
T ss_pred EEEEecccccCcHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999999999988888766553
No 21
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.96 E-value=1.2e-27 Score=226.63 Aligned_cols=152 Identities=35% Similarity=0.618 Sum_probs=141.6
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+++.|...+.+|+|.++..+.+.+.+..+.+++||++|++++..++..+++++|++++|||++++.||
T Consensus 9 ~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf 88 (161)
T cd04117 9 SGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSY 88 (161)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHH
Confidence 99999999999999999888899999988888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
+.+..|+..+.......+|+++|+||+|+...+.+..+++..+++.++++|+++||++|.||+++|.+|.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 89 QHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 999999999887766678999999999998878888889999999999999999999999999999999764
No 22
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.7e-27 Score=238.48 Aligned_cols=163 Identities=27% Similarity=0.502 Sum_probs=147.2
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
.+||+++|+ +|||||||+++|+.+.|...+.||++.++ ...+.+++..+.+.||||+
T Consensus 13 ~~KIvvvGd----------------------~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTa 69 (232)
T cd04174 13 RCKLVLVGD----------------------VQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTS 69 (232)
T ss_pred eEEEEEECC----------------------CCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCC
Confidence 478999999 99999999999999999999999999875 4567888999999999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCeEEEEEECCCCCC------------ccccC
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAI-KTWVKELKRNVDEPLVLCVVGNKTDLES------------SREVN 230 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l-~~~l~~i~~~~~~~iPvIlVgNK~DL~~------------~~~v~ 230 (617)
|+++|..+.+.|++++|++|+|||++++.||+.+ ..|+..+.+..+ .+|+||||||+||.. .+.+.
T Consensus 70 G~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs 148 (232)
T cd04174 70 GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPIS 148 (232)
T ss_pred CchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCC
Confidence 9999999999999999999999999999999984 799999987664 479999999999964 25688
Q ss_pred HHHHHHHHHhcCC-eEEEEcCCCCC-CHHHHHHHHHHHHHHh
Q psy3029 231 REEAFHYSKSIGG-TYYETSALQDQ-GIEDVFLNVSKGLICL 270 (617)
Q Consensus 231 ~~e~~~~~~~~g~-~~~evSAktg~-gI~eLf~~I~~~l~~~ 270 (617)
.+++.++++++++ .|+||||++|. ||+++|..++..+.+.
T Consensus 149 ~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 149 YEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred HHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 8999999999999 69999999998 8999999999887654
No 23
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.96 E-value=1.8e-27 Score=226.15 Aligned_cols=154 Identities=34% Similarity=0.601 Sum_probs=141.0
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|.++++...+.+|.|.++....+..++..+.+.+|||+|++++..++..+++++|++++|||++++.+|
T Consensus 10 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~ 89 (165)
T cd01865 10 SSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF 89 (165)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHH
Confidence 99999999999999999888999999888777777788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
+.+.+|+..+.......+|++||+||+|+...+.+..++..++++.++++++++||++|.|++++|++|...+.
T Consensus 90 ~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 90 NAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999998776556899999999999877777778888889889999999999999999999999988764
No 24
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.96 E-value=2e-27 Score=226.17 Aligned_cols=155 Identities=37% Similarity=0.661 Sum_probs=143.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|++..|...+.++++.++..+.+.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|
T Consensus 12 ~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~ 91 (167)
T cd01867 12 SGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSF 91 (167)
T ss_pred CCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHH
Confidence 99999999999999999999999999998888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
..+.+|+..+.+....++|++||+||+|+.+.+.+..+++..++..++++++++||++|.|++++|++|.+.+..
T Consensus 92 ~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 92 ENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred HhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999988766678999999999998777777888888999999999999999999999999999988753
No 25
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.96 E-value=1.7e-27 Score=228.40 Aligned_cols=164 Identities=29% Similarity=0.493 Sum_probs=147.3
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
.+||+++|+ +|||||||+++|+.+.|...+.+|++..+ .+.+.+++..+.+.||||+
T Consensus 2 ~~ki~vvG~----------------------~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~ 58 (172)
T cd04141 2 EYKIVMLGA----------------------GGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTA 58 (172)
T ss_pred ceEEEEECC----------------------CCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCC
Confidence 368888998 99999999999999999888899998654 4567788888999999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
|+++|..++..+++.+|++|+|||++++.||..+.+|+..+.+.. ..++|++||+||+|+...+.+..+++..+++.++
T Consensus 59 G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~ 138 (172)
T cd04141 59 GQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFN 138 (172)
T ss_pred CchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999988887643 3468999999999998777888888999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 243 GTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
++|++|||++|.||+++|++|++.+...
T Consensus 139 ~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 139 CPFFETSAALRHYIDDAFHGLVREIRRK 166 (172)
T ss_pred CEEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999887653
No 26
>KOG0095|consensus
Probab=99.96 E-value=4e-28 Score=216.26 Aligned_cols=165 Identities=38% Similarity=0.659 Sum_probs=155.8
Q ss_pred eEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCC
Q psy3029 85 IKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAG 164 (617)
Q Consensus 85 ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G 164 (617)
+||+++|. .|||||+|+.||..+-|+.-...|+|++|..+++.+++..++++||||+|
T Consensus 8 fkivlvgn----------------------agvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtag 65 (213)
T KOG0095|consen 8 FKIVLVGN----------------------AGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAG 65 (213)
T ss_pred EEEEEEcc----------------------CCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccc
Confidence 68999999 99999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCe
Q psy3029 165 QERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGT 244 (617)
Q Consensus 165 ~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~ 244 (617)
+++|+.+.+.|++.++++|+|||++-.+||+.+-+|+.+|.++...++--|+||||+|+.+.++++.+.+++|.+....-
T Consensus 66 qerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmy 145 (213)
T KOG0095|consen 66 QERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMY 145 (213)
T ss_pred hHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999887788999999999998999999999999888778
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 245 YYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 245 ~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
|+|+||+.-.||+.||..+...+....
T Consensus 146 fletsakea~nve~lf~~~a~rli~~a 172 (213)
T KOG0095|consen 146 FLETSAKEADNVEKLFLDLACRLISEA 172 (213)
T ss_pred hhhhcccchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999987776544
No 27
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.96 E-value=2.1e-27 Score=229.96 Aligned_cols=154 Identities=25% Similarity=0.466 Sum_probs=137.1
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+++.|...+.||+|.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++|||++++.||
T Consensus 9 ~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~ 88 (182)
T cd04128 9 AQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTL 88 (182)
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHH
Confidence 99999999999999999888999999998888888899899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCC-----ccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLES-----SREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~-----~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
+.+.+|+..+.+..+..+| |+||||+|+.. +.....+++.++++.++++++++||++|.||+++|++|.+.+..
T Consensus 89 ~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 89 NSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999876655567 68899999952 11122456778888899999999999999999999999988865
No 28
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.95 E-value=3.1e-27 Score=222.99 Aligned_cols=154 Identities=38% Similarity=0.742 Sum_probs=147.0
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
++||||||+++|.++.|...+.+|+|.+...+.+.+++..+.+.+||++|+++|..+...+++++|++|+|||++++.||
T Consensus 8 ~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~ 87 (162)
T PF00071_consen 8 SGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESF 87 (162)
T ss_dssp TTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHH
T ss_pred CCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
+.+..|+..+....+..+|++|||||.|+...+.++.+++.+++++++++|+++||+++.||.++|..+++.+.
T Consensus 88 ~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 88 ENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp HTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999988766899999999999888889999999999999999999999999999999999998774
No 29
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.95 E-value=2.8e-27 Score=223.69 Aligned_cols=154 Identities=31% Similarity=0.612 Sum_probs=141.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+++++...+.++++.++..+.+.+.+..+.+++|||+|++++..++..+++.+|++|+|||++++.+|
T Consensus 9 ~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~ 88 (168)
T cd04119 9 SGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSF 88 (168)
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHH
Confidence 99999999999999999889999999998888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-----CCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVD-----EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~-----~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
..+..|+..+.+... ..+|+++|+||+|+..++.+..++...++...+++++++||++|.|++++|++|++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 89 EALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred HhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999887653 45899999999999766667788888889888999999999999999999999988764
No 30
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=3.2e-27 Score=232.18 Aligned_cols=156 Identities=38% Similarity=0.635 Sum_probs=141.9
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEEC-CeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhh
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG-ENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHS 193 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S 193 (617)
+|||||||+++|+++.+...+.+|+|.++..+.+.++ +..+.+.+|||+|+++|..+++.+++++|++|+|||++++.+
T Consensus 9 ~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s 88 (201)
T cd04107 9 LGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPST 88 (201)
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHH
Confidence 9999999999999999888899999999888888887 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC----CCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC-CeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 194 FAAIKTWVKELKRNV----DEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG-GTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 194 ~~~l~~~l~~i~~~~----~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g-~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
|+.+..|+..+.... ...+|++||+||+|+...+.+..+++.++++..+ ..++++||++|.||+++|++|++.+.
T Consensus 89 ~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 89 FEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999998886532 2468999999999997666778888999999998 59999999999999999999999886
Q ss_pred Hh
Q psy3029 269 CL 270 (617)
Q Consensus 269 ~~ 270 (617)
..
T Consensus 169 ~~ 170 (201)
T cd04107 169 AN 170 (201)
T ss_pred Hh
Confidence 54
No 31
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.95 E-value=3e-27 Score=230.61 Aligned_cols=162 Identities=27% Similarity=0.519 Sum_probs=143.1
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
.+||+++|+ .|||||||+.+|+.+.|...+.||++..+ .+.+.+++..+.++||||+
T Consensus 3 ~~ki~~vG~----------------------~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~ 59 (191)
T cd01875 3 SIKCVVVGD----------------------GAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTA 59 (191)
T ss_pred cEEEEEECC----------------------CCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECC
Confidence 468888888 99999999999999999889999998765 4556788889999999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCcc------------ccC
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDEPLVLCVVGNKTDLESSR------------EVN 230 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~~------------~v~ 230 (617)
|+++|..+++.|++++|++|+|||++++.||+.+. .|+..+....+ ++|++|||||+||.+.+ .+.
T Consensus 60 G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~ 138 (191)
T cd01875 60 GQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRNDADTLKKLKEQGQAPIT 138 (191)
T ss_pred CchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEeChhhhcChhhHHHHhhccCCCCC
Confidence 99999999999999999999999999999999996 69888876554 58999999999996542 366
Q ss_pred HHHHHHHHHhcC-CeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 231 REEAFHYSKSIG-GTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 231 ~~e~~~~~~~~g-~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
.+++..+++.++ ++|+++||++|.||+++|++|++.+..
T Consensus 139 ~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 139 PQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 778889999998 599999999999999999999987754
No 32
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.95 E-value=4.9e-27 Score=222.90 Aligned_cols=154 Identities=35% Similarity=0.678 Sum_probs=142.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+++.+...+.++.+.++..+.+.+.+..+.+++||++|++++..++..+++++|++|+|||++++++|
T Consensus 11 ~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~ 90 (166)
T cd01869 11 SGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESF 90 (166)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHH
Confidence 99999999999999998888889999988888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
..+.+|+..+.......+|+++|+||+|+...+.+..+++..+++.++++++++||++|.||+++|..|++.+.
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 91 NNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred HhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence 99999999998776556899999999999877778888888999999999999999999999999999988774
No 33
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.95 E-value=4.2e-27 Score=226.35 Aligned_cols=164 Identities=35% Similarity=0.589 Sum_probs=147.6
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEEC----------Ce
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG----------EN 153 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~----------~~ 153 (617)
.+||+++|+ +|||||||+++|+++.+...+.+|++.++....+.+. +.
T Consensus 4 ~~ki~ivG~----------------------~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (180)
T cd04127 4 LIKFLALGD----------------------SGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQ 61 (180)
T ss_pred eEEEEEECC----------------------CCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCC
Confidence 479999999 9999999999999999999999999998877766654 45
Q ss_pred EEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHH
Q psy3029 154 KVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNRE 232 (617)
Q Consensus 154 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~ 232 (617)
.+.+.||||+|+++|..++..+++++|++|+|||++++.||..+..|+..+.... ..++|++||+||+|+...+.+..+
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~ 141 (180)
T cd04127 62 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEE 141 (180)
T ss_pred EEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHH
Confidence 6899999999999999999999999999999999999999999999999987754 245799999999999877778888
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 233 e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
++.++++.++++++++||++|.|++++|++|++.+.+
T Consensus 142 ~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 142 QAKALADKYGIPYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999987754
No 34
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.95 E-value=8.1e-27 Score=221.02 Aligned_cols=161 Identities=39% Similarity=0.700 Sum_probs=148.5
Q ss_pred eEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCC
Q psy3029 85 IKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAG 164 (617)
Q Consensus 85 ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G 164 (617)
+||+++|+ +|||||||+++|+++.+...+.++.+.++..+.+.+++..+.+.+||++|
T Consensus 4 ~ki~vvG~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g 61 (165)
T cd01868 4 FKIVLIGD----------------------SGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAG 61 (165)
T ss_pred eEEEEECC----------------------CCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCC
Confidence 58888888 99999999999999998888899999998888888888889999999999
Q ss_pred cccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCe
Q psy3029 165 QERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGT 244 (617)
Q Consensus 165 ~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~ 244 (617)
++++..+++.++++++++|+|||++++.+|..+.+|+..+.+....++|++||+||+|+...+.+..++...++...+++
T Consensus 62 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 141 (165)
T cd01868 62 QERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLS 141 (165)
T ss_pred hHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCE
Confidence 99999999999999999999999999999999999999998877666899999999999877777788888899888899
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 245 YYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 245 ~~evSAktg~gI~eLf~~I~~~l 267 (617)
++++||++|.|++++|++|+..+
T Consensus 142 ~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 142 FIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998764
No 35
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.95 E-value=7.6e-27 Score=232.06 Aligned_cols=156 Identities=29% Similarity=0.489 Sum_probs=142.4
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECC-eEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhh
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE-NKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHS 193 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~-~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S 193 (617)
+|||||||+++|+++.|...+.+|+|.+++.+.+.+++ ..+.++||||+|++.+..++..|++++|++|+|||++++.+
T Consensus 9 ~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s 88 (215)
T cd04109 9 GAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQS 88 (215)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHH
Confidence 99999999999999999999999999998888888865 57999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC---CCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 194 FAAIKTWVKELKRNVD---EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 194 ~~~l~~~l~~i~~~~~---~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
|+.+.+|+..+.+... .++|++||+||+|+...+.+..++...+++.++++++++||++|.||+++|++|.+.+...
T Consensus 89 ~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 89 FENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999887643 3468999999999987778888888899999999999999999999999999999988754
No 36
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.95 E-value=8.1e-27 Score=224.39 Aligned_cols=150 Identities=26% Similarity=0.507 Sum_probs=133.2
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+.+.|...+.||++..+ .+.+.+++..+.+.||||+|+++|..++..+++++|++|+|||++++.+|
T Consensus 10 ~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~ 88 (175)
T cd01874 10 GAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 88 (175)
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHH
Confidence 99999999999999999889999998775 34567788889999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCc------------cccCHHHHHHHHHhcC-CeEEEEcCCCCCCHHHHH
Q psy3029 195 AAIK-TWVKELKRNVDEPLVLCVVGNKTDLESS------------REVNREEAFHYSKSIG-GTYYETSALQDQGIEDVF 260 (617)
Q Consensus 195 ~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~------------~~v~~~e~~~~~~~~g-~~~~evSAktg~gI~eLf 260 (617)
+.+. .|+..+....+ ++|++||+||+|+... +.+..+++.++++..+ +.|+++||++|.||+++|
T Consensus 89 ~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f 167 (175)
T cd01874 89 ENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVF 167 (175)
T ss_pred HHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHH
Confidence 9996 59988877654 5899999999998643 4577788888998887 699999999999999999
Q ss_pred HHHHHH
Q psy3029 261 LNVSKG 266 (617)
Q Consensus 261 ~~I~~~ 266 (617)
+.++..
T Consensus 168 ~~~~~~ 173 (175)
T cd01874 168 DEAILA 173 (175)
T ss_pred HHHHHH
Confidence 998874
No 37
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.95 E-value=8.5e-27 Score=219.91 Aligned_cols=152 Identities=32% Similarity=0.576 Sum_probs=135.4
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+.+.+...+.+|.+ +.+.+.+.+++..+.+.||||+|+++|..++..+++++|++++|||++++.+|
T Consensus 10 ~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~ 88 (163)
T cd04136 10 GGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSF 88 (163)
T ss_pred CCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHH
Confidence 99999999999999998888888887 44566777888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 195 ~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
+.+..|+..+.... ..++|++||+||+|+...+.+..++...+++.++++++++||++|.|++++|++|++.+
T Consensus 89 ~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 89 NDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 99999999887654 24689999999999977667777777788888889999999999999999999998754
No 38
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=1.4e-26 Score=224.96 Aligned_cols=157 Identities=37% Similarity=0.632 Sum_probs=144.4
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+++.+...+.+|+|.++..+.+.+++..+.+.+||++|++++..++..+++++|++|+|||++++.+|
T Consensus 9 ~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~ 88 (188)
T cd04125 9 YGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESF 88 (188)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHH
Confidence 99999999999999998877899999988888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
..+..|+..+.......+|++||+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++|++.+....
T Consensus 89 ~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~~ 165 (188)
T cd04125 89 ENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKRL 165 (188)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999998876666899999999999877777888888888888999999999999999999999999887644
No 39
>PTZ00369 Ras-like protein; Provisional
Probab=99.95 E-value=2.1e-26 Score=224.16 Aligned_cols=166 Identities=30% Similarity=0.498 Sum_probs=148.1
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|+++.+...+.+|.+.++ .+.+.+++..+.+++|||
T Consensus 4 ~~~Ki~iiG~----------------------~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt 60 (189)
T PTZ00369 4 TEYKLVVVGG----------------------GGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDT 60 (189)
T ss_pred cceEEEEECC----------------------CCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeC
Confidence 3578888888 99999999999999998888889998775 567778888999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
+|+++|..++..|++.+|++|+|||++++.+|+.+..|+..+.+... .++|++||+||+|+...+.+..+++..+++.+
T Consensus 61 ~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~ 140 (189)
T PTZ00369 61 AGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSF 140 (189)
T ss_pred CCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998876543 46899999999999776777777888888888
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
+++++++||++|.||+++|++|++.+....
T Consensus 141 ~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~ 170 (189)
T PTZ00369 141 GIPFLETSAKQRVNVDEAFYELVREIRKYL 170 (189)
T ss_pred CCEEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998886653
No 40
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.95 E-value=2.6e-26 Score=218.82 Aligned_cols=155 Identities=38% Similarity=0.675 Sum_probs=142.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|++.++...+.++.|.++..+.+.+++..+.+.+||++|++++..+...+++++|++|+|||++++.+|
T Consensus 13 ~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~ 92 (168)
T cd01866 13 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 92 (168)
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHH
Confidence 99999999999999998888889999998888888898889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
+.+..|+..+.+.....+|++||+||+|+...+.+..+++..++...++.++++||+++.||+++|.++.+.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 93 NHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999987655568999999999998767778888888999999999999999999999999999887743
No 41
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.95 E-value=1.5e-26 Score=218.22 Aligned_cols=151 Identities=32% Similarity=0.574 Sum_probs=137.7
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEEC--CeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChh
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG--ENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYH 192 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~--~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~ 192 (617)
+|||||||+++|+++.+...+.+|++.++..+.+.+. +..+.+++|||+|+++|..++..+++++|++++|||+++++
T Consensus 9 ~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~ 88 (162)
T cd04106 9 GNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRE 88 (162)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHH
Confidence 9999999999999999888889999998877777776 77899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 193 SFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 193 S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
+|+.+..|+..+.+... ++|++||+||+|+..++.+..+++..+++.++++++++||++|.|++++|++|...
T Consensus 89 s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 89 SFEAIESWKEKVEAECG-DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred HHHHHHHHHHHHHHhCC-CCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999876554 58999999999998777788888889999999999999999999999999998753
No 42
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.95 E-value=2.1e-26 Score=217.71 Aligned_cols=152 Identities=31% Similarity=0.548 Sum_probs=135.3
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++++.+.+...+.+|.+ +++...+.+++..+.++||||+|+++|..++..+++++|++|+|||++++.+|
T Consensus 10 ~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~ 88 (163)
T cd04176 10 GGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTF 88 (163)
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHH
Confidence 99999999999999999888888876 55667788888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
+++..|+..+.+... .++|++||+||+|+..++.+..++...+++.++++++++||++|.|++++|.+|++.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 89 QDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 999999988877532 4689999999999976666777777888888889999999999999999999998654
No 43
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.95 E-value=2.8e-26 Score=219.52 Aligned_cols=155 Identities=31% Similarity=0.597 Sum_probs=138.1
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+++.|...+.||++.++..+.+.+.+..+.+++|||+|+++|..++..+++++|++|+|||++++.+|
T Consensus 9 ~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~ 88 (170)
T cd04108 9 LSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASL 88 (170)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHH
Confidence 99999999999999999999999999998888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCCCCeEEEEEECCCCCCccc--cCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRN-VDEPLVLCVVGNKTDLESSRE--VNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 195 ~~l~~~l~~i~~~-~~~~iPvIlVgNK~DL~~~~~--v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
..+.+|+..+.+. .+...|+++|+||+|+..... ...+++..++.+++.+++++||++|.||+++|+.|.+.+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 89 EHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999987654 344578999999999965433 34566778888888999999999999999999999887754
No 44
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=2e-26 Score=229.67 Aligned_cols=163 Identities=29% Similarity=0.539 Sum_probs=145.8
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ +|||||||+++|+.+.+...+.+|+|.++..+.+..++..+.+.+||
T Consensus 11 ~~~~Ki~vvG~----------------------~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~D 68 (219)
T PLN03071 11 YPSFKLVIVGD----------------------GGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68 (219)
T ss_pred CCceEEEEECc----------------------CCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEE
Confidence 34579999999 99999999999999999999999999998888887888889999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
|+|+++|..++..|++++|++|+|||++++.+|+.+..|+..+.+... ++|++|||||+|+.. +.+..+++ .+++..
T Consensus 69 t~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~ 145 (219)
T PLN03071 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKK 145 (219)
T ss_pred CCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhhhh-ccCCHHHH-HHHHhc
Confidence 999999999999999999999999999999999999999999987654 589999999999854 34444544 777888
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
+++|+++||++|.||+++|++|++.+..
T Consensus 146 ~~~~~e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 146 NLQYYEISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 8999999999999999999999988854
No 45
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.95 E-value=2.3e-26 Score=217.05 Aligned_cols=152 Identities=42% Similarity=0.707 Sum_probs=141.1
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|++..+...+.++.+.++....+.+++..+.+++||++|+++|..+++.+++++|++|+|||++++.+|
T Consensus 9 ~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 88 (161)
T cd04113 9 SGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSF 88 (161)
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHH
Confidence 99999999999999998888899999988888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
..+..|+..+.......+|++||+||+|+...+.+..+++..+++..++.++++||+++.|++++|+++++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 89 EALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 999999999877666678999999999998777788888889999999999999999999999999999864
No 46
>PLN03110 Rab GTPase; Provisional
Probab=99.95 E-value=3.1e-26 Score=227.92 Aligned_cols=166 Identities=36% Similarity=0.647 Sum_probs=153.9
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
.+||+++|+ +|||||||+++|++..+...+.+|+|.++..+.+.+++..+.++||||+
T Consensus 12 ~~Ki~ivG~----------------------~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~ 69 (216)
T PLN03110 12 LFKIVLIGD----------------------SGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTA 69 (216)
T ss_pred eeEEEEECC----------------------CCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECC
Confidence 479999999 9999999999999999888889999999988889999989999999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG 243 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~ 243 (617)
|++++..++..++++++++|+|||++++.+|+.+..|+..+......++|++||+||+|+...+.+..+++..++..+++
T Consensus 70 G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~ 149 (216)
T PLN03110 70 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGL 149 (216)
T ss_pred CcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999887666789999999999987777888888889988999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 244 TYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 244 ~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
+++++||++|.|++++|+.|+..+....
T Consensus 150 ~~~e~SA~~g~~v~~lf~~l~~~i~~~~ 177 (216)
T PLN03110 150 SFLETSALEATNVEKAFQTILLEIYHII 177 (216)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999887754
No 47
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.95 E-value=2.5e-26 Score=217.63 Aligned_cols=152 Identities=29% Similarity=0.556 Sum_probs=136.2
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+.+.+...+.+|++..+ .+.+.+++..+.+++|||+|++++..+++.+++++|++|+|||++++.+|
T Consensus 10 ~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~ 88 (164)
T cd04175 10 GGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTF 88 (164)
T ss_pred CCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHH
Confidence 99999999999999888888889988665 46677788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 195 ~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
+.+.+|+..+.... ..++|++||+||+|+...+.+..++...+++.++++++++||++|.|++++|.+|++.+
T Consensus 89 ~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 89 NDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 99999999887643 35689999999999987777777777788888899999999999999999999998765
No 48
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=2.9e-26 Score=223.29 Aligned_cols=156 Identities=28% Similarity=0.467 Sum_probs=138.8
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+.+.|...+.+|.+..+ .+.+.+++..+.++||||+|+++|..++..+++.+|++|+|||++++.||
T Consensus 8 ~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~ 86 (190)
T cd04144 8 GGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTF 86 (190)
T ss_pred CCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHH
Confidence 99999999999999998888889988664 45566788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC---CCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 195 AAIKTWVKELKRNVD---EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~---~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
+.+..|+..+..... .++|++||+||+|+...+.+..+++..++..++++++++||++|.||+++|++|++.+....
T Consensus 87 ~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~ 166 (190)
T cd04144 87 ERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQR 166 (190)
T ss_pred HHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 999999988866532 45899999999999877778888888889889999999999999999999999998876544
No 49
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=4.5e-26 Score=225.87 Aligned_cols=167 Identities=39% Similarity=0.667 Sum_probs=150.3
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEE-CCeEEEEEEEec
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINV-GENKVKLQVWDT 162 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~-~~~~~~l~i~Dt 162 (617)
.+||+++|+ +|||||||+++|+++.+...+.+|+|.++..+.+.+ ++..+.+++|||
T Consensus 2 ~~KIvvvG~----------------------~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt 59 (211)
T cd04111 2 QFRLIVIGD----------------------STVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDT 59 (211)
T ss_pred ceEEEEECC----------------------CCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeC
Confidence 368888888 999999999999999988888899999988888877 466789999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
+|++++..++..+++++|++|+|||++++.||+.+.+|+..+.+... ..+|++||+||+|+...+.+..++...+++.+
T Consensus 60 ~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~ 139 (211)
T cd04111 60 AGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDL 139 (211)
T ss_pred CcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999876543 45789999999999877778888889999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHHhhh
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLICLSQ 272 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~~~~ 272 (617)
+++++++||++|.||+++|++|.+.+.....
T Consensus 140 ~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~ 170 (211)
T cd04111 140 GMKYIETSARTGDNVEEAFELLTQEIYERIK 170 (211)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998876643
No 50
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=3.6e-26 Score=216.91 Aligned_cols=161 Identities=40% Similarity=0.658 Sum_probs=145.8
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
.+||+++|+ +|||||||+++|..+.+...+.++.+.++..+.+.+++..+.+.+|||+
T Consensus 3 ~~kv~vvG~----------------------~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~ 60 (165)
T cd01864 3 LFKIILIGD----------------------SNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTA 60 (165)
T ss_pred eeEEEEECC----------------------CCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECC
Confidence 368888888 9999999999999999888888999988888888888888899999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG 243 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~ 243 (617)
|++++..++..+++.+|++++|||++++.+|..+..|+..+.......+|+++|+||+|+...+++..+++..+++.++.
T Consensus 61 G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 140 (165)
T cd01864 61 GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGM 140 (165)
T ss_pred ChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999876656789999999999987777777888889888886
Q ss_pred -eEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 244 -TYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 244 -~~~evSAktg~gI~eLf~~I~~~ 266 (617)
.++++||++|.|++++|++|.+.
T Consensus 141 ~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 141 LAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHh
Confidence 78999999999999999999864
No 51
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.95 E-value=4.8e-26 Score=223.52 Aligned_cols=165 Identities=34% Similarity=0.663 Sum_probs=150.4
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
.+||+++|+ +|||||||+++|++..+...+.+|++.++..+.+.+.+..+.+.|||++
T Consensus 6 ~~kivvvG~----------------------~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~ 63 (199)
T cd04110 6 LFKLLIIGD----------------------SGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTA 63 (199)
T ss_pred eeEEEEECC----------------------CCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCC
Confidence 479999999 9999999999999999888899999999888888888888999999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG 243 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~ 243 (617)
|++++..++..++++++++|+|||++++++|..+..|+..+..... .+|++||+||+|+...+.+..+++..++..+++
T Consensus 64 G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~ 142 (199)
T cd04110 64 GQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGI 142 (199)
T ss_pred CchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccccCHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999877654 479999999999987777777888889988899
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 244 TYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 244 ~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
+++++||++|.||+++|++|...+....
T Consensus 143 ~~~e~Sa~~~~gi~~lf~~l~~~~~~~~ 170 (199)
T cd04110 143 SLFETSAKENINVEEMFNCITELVLRAK 170 (199)
T ss_pred EEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999887643
No 52
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.95 E-value=3.4e-26 Score=227.62 Aligned_cols=152 Identities=31% Similarity=0.564 Sum_probs=134.4
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+.+.|.. +.+|+|.++..+.+ ..+.+.||||+|+++|..++..+++++|++|+|||++++.+|
T Consensus 9 ~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf 83 (220)
T cd04126 9 MNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSL 83 (220)
T ss_pred CCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHH
Confidence 9999999999999999864 67899887655443 568899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCC-------------------ccccCHHHHHHHHHhcC-------------
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLES-------------------SREVNREEAFHYSKSIG------------- 242 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~-------------------~~~v~~~e~~~~~~~~g------------- 242 (617)
+.+..|+..+.+.....+|+||||||+||.. .+++..+++..++++++
T Consensus 84 ~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~ 163 (220)
T cd04126 84 EELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAA 163 (220)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccc
Confidence 9999888887765555689999999999975 57788899999999876
Q ss_pred -CeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 243 -GTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 243 -~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
++|+||||++|.||+++|..+++.+....
T Consensus 164 ~~~~~E~SA~tg~~V~elf~~i~~~~~~~~ 193 (220)
T cd04126 164 EKMCFETSAKTGYNVDELFEYLFNLVLPLI 193 (220)
T ss_pred cceEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999998887654
No 53
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.95 E-value=2.9e-26 Score=220.35 Aligned_cols=150 Identities=29% Similarity=0.563 Sum_probs=132.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+.+|+.+.|...+.||++.. +.+.+.+++..+.+.||||+|+++|..+++.+++++|++|+|||+++++||
T Consensus 10 ~~vGKSsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf 88 (174)
T cd01871 10 GAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 88 (174)
T ss_pred CCCCHHHHHHHHhcCCCCCcCCCcceee-eEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHH
Confidence 9999999999999999988999998754 455667888889999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCc------------cccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHH
Q psy3029 195 AAIK-TWVKELKRNVDEPLVLCVVGNKTDLESS------------REVNREEAFHYSKSIGG-TYYETSALQDQGIEDVF 260 (617)
Q Consensus 195 ~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~------------~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf 260 (617)
+.+. .|+..+....+ ++|++||+||+|+... +.+..+++.+++++++. +|++|||++|.||+++|
T Consensus 89 ~~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 167 (174)
T cd01871 89 ENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVF 167 (174)
T ss_pred HHHHHHHHHHHHHhCC-CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHH
Confidence 9996 69888876554 5899999999999543 24778889999999985 99999999999999999
Q ss_pred HHHHHH
Q psy3029 261 LNVSKG 266 (617)
Q Consensus 261 ~~I~~~ 266 (617)
+.+++.
T Consensus 168 ~~l~~~ 173 (174)
T cd01871 168 DEAIRA 173 (174)
T ss_pred HHHHHh
Confidence 998763
No 54
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=6.1e-26 Score=221.23 Aligned_cols=157 Identities=41% Similarity=0.657 Sum_probs=142.7
Q ss_pred CCCCHHHHHHHHHcCCCC-CccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhh
Q psy3029 115 LGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHS 193 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~-~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S 193 (617)
+|||||||+++|+++.+. ..+.+|.+.++..+.+.+++..+.+.||||+|++++..++..+++++|++|+|||++++.+
T Consensus 9 ~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s 88 (191)
T cd04112 9 SGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKAS 88 (191)
T ss_pred CCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHH
Confidence 999999999999998875 3678899988877778888889999999999999999989999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 194 FAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 194 ~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
|+.+..|+..+.......+|++||+||+|+..++.+..+++..+++.++++|+++||++|.|++++|.+|.+.+....
T Consensus 89 ~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 89 FDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999998877667899999999999776777778888899999999999999999999999999999887653
No 55
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.94 E-value=5.1e-26 Score=216.78 Aligned_cols=152 Identities=28% Similarity=0.557 Sum_probs=135.7
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+.+.+...+.+|++.++..+.+..++..+.+.+|||+|++++..++..++..+|++|+|||++++.+|
T Consensus 9 ~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 88 (166)
T cd00877 9 GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTY 88 (166)
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHH
Confidence 99999999999999888888999999998888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
..+..|+..+..... ++|+++|+||+|+.. +.+.. +..++++..+++++++||++|.||+++|++|++.+..
T Consensus 89 ~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 89 KNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred HHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 999999999988765 589999999999973 33333 3456777778899999999999999999999988754
No 56
>PLN03108 Rab family protein; Provisional
Probab=99.94 E-value=1.3e-25 Score=222.41 Aligned_cols=167 Identities=34% Similarity=0.606 Sum_probs=152.7
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+|+|+ +|||||||+++|++..+...+.++++.++....+.+++..+.+.+|||
T Consensus 5 ~~~kivivG~----------------------~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt 62 (210)
T PLN03108 5 YLFKYIIIGD----------------------TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62 (210)
T ss_pred cceEEEEECC----------------------CCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeC
Confidence 4578999999 999999999999999888888899999988888888888899999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
+|++++..++..+++++|++|+|||++++.+|..+.+|+..+.......+|+++|+||+|+...+.+..+++.++++.++
T Consensus 63 ~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 142 (210)
T PLN03108 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG 142 (210)
T ss_pred CCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999998877665568999999999998777788888999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 243 GTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
++++++||+++.||+++|+++++.+....
T Consensus 143 ~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~ 171 (210)
T PLN03108 143 LIFMEASAKTAQNVEEAFIKTAAKIYKKI 171 (210)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998887654
No 57
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.94 E-value=5.3e-26 Score=226.42 Aligned_cols=162 Identities=23% Similarity=0.491 Sum_probs=142.3
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
++||+|+|+ +|||||||+++|+.+.|...|.||++..+ ...+.+++..+.|.||||+
T Consensus 1 ~~KIvvvGd----------------------~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~ 57 (222)
T cd04173 1 RCKIVVVGD----------------------AECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTS 57 (222)
T ss_pred CeEEEEECC----------------------CCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCC
Confidence 368899998 99999999999999999999999998775 4677888999999999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCeEEEEEECCCCCCc------------cccC
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAI-KTWVKELKRNVDEPLVLCVVGNKTDLESS------------REVN 230 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l-~~~l~~i~~~~~~~iPvIlVgNK~DL~~~------------~~v~ 230 (617)
|+++|..+++.++.++|++|+|||++++++|+.+ ..|...+....+ .+|+||||||+||..+ ..+.
T Consensus 58 G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~-~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs 136 (222)
T cd04173 58 GSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCP-NAKVVLVGCKLDMRTDLATLRELSKQRLIPVT 136 (222)
T ss_pred CcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEECcccccchhhhhhhhhccCCccC
Confidence 9999999999999999999999999999999998 468877766554 5899999999999642 1367
Q ss_pred HHHHHHHHHhcCC-eEEEEcCCCCCC-HHHHHHHHHHHHHH
Q psy3029 231 REEAFHYSKSIGG-TYYETSALQDQG-IEDVFLNVSKGLIC 269 (617)
Q Consensus 231 ~~e~~~~~~~~g~-~~~evSAktg~g-I~eLf~~I~~~l~~ 269 (617)
.+++..+++++++ +|+||||+++.+ |+++|..++.....
T Consensus 137 ~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 137 HEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLG 177 (222)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHh
Confidence 7889999999996 999999999985 99999998887654
No 58
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.94 E-value=6.4e-26 Score=216.07 Aligned_cols=161 Identities=37% Similarity=0.652 Sum_probs=144.5
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|+++.+...+.+++|.++..+.+.+++..+.++|||+
T Consensus 4 ~~~ki~vvG~----------------------~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~ 61 (170)
T cd04116 4 SLLKVILLGD----------------------GGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDT 61 (170)
T ss_pred eEEEEEEECC----------------------CCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeC
Confidence 4578999999 999999999999999998888899998888888888999999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC----CCCCeEEEEEECCCCCCccccCHHHHHHHH
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV----DEPLVLCVVGNKTDLESSREVNREEAFHYS 238 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~----~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~ 238 (617)
+|++++..++..+++.+|++|+|||++++.+|+.+..|+..+.... ...+|++||+||+|+. .+.+..+++.+++
T Consensus 62 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~ 140 (170)
T cd04116 62 AGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWC 140 (170)
T ss_pred CChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHH
Confidence 9999999999999999999999999999999999999998876644 2458999999999986 4567778888999
Q ss_pred HhcCC-eEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 239 KSIGG-TYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 239 ~~~g~-~~~evSAktg~gI~eLf~~I~~~ 266 (617)
+.+++ +++++||++|.|++++|+.+++.
T Consensus 141 ~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 141 RENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred HHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 88885 89999999999999999998864
No 59
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.94 E-value=8.1e-26 Score=212.38 Aligned_cols=151 Identities=34% Similarity=0.562 Sum_probs=133.3
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+++.+...+.+|.+..+ .+.+.+++..+.+.+|||+|++++..++..|++++|++++|||++++.+|
T Consensus 10 ~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~ 88 (162)
T cd04138 10 GGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSF 88 (162)
T ss_pred CCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHH
Confidence 99999999999999998888889887654 56667788888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
..+..|+..+.+... .++|++||+||+|+.. +.+..+++..+++.++++++++||++|.|++++|++|++.+
T Consensus 89 ~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 89 EDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 999999988877642 4689999999999865 45566777888888899999999999999999999998654
No 60
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.94 E-value=8.6e-26 Score=214.52 Aligned_cols=150 Identities=27% Similarity=0.441 Sum_probs=132.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+++.|...+.++.+..+ ...+......+.+.+|||+|+++|..+...++..++++|+|||++++.+|
T Consensus 10 ~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~ 88 (165)
T cd04140 10 GGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSL 88 (165)
T ss_pred CCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHH
Confidence 99999999999999998888888887554 55566677889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC---CCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVD---EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~---~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~ 265 (617)
+.+..|+..+.+... .++|++||+||+|+...+++..+++..++..+++++++|||++|.||+++|++|++
T Consensus 89 ~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 89 EELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence 999999887766432 45899999999999776777777888888888899999999999999999999875
No 61
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.94 E-value=1.3e-25 Score=211.81 Aligned_cols=155 Identities=45% Similarity=0.768 Sum_probs=141.9
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|++..+...+.++++.++....+.+++..+.+.+||++|++++..+...+++.+|++|+|||++++.++
T Consensus 9 ~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~ 88 (164)
T smart00175 9 SGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESF 88 (164)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHH
Confidence 99999999999999988888889999988888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
+.+..|+..+..+....+|+++|+||+|+...+++..+.+.++++.++++++++||+++.|+++++++|.+.+.+
T Consensus 89 ~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 89 ENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 999999999888765578999999999997766777788888999899999999999999999999999987743
No 62
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.94 E-value=9.3e-26 Score=221.48 Aligned_cols=155 Identities=27% Similarity=0.510 Sum_probs=139.5
Q ss_pred CCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCCh
Q psy3029 112 WFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQY 191 (617)
Q Consensus 112 ~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~ 191 (617)
+|.+|||||||+++|+.+.|...+.+|+|.++..+.+.+++..+.+.||||+|+++|..++..|++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 35599999999999999998888999999999888888888999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 192 HSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 192 ~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
.||+.+..|+..+.+... .+|++|||||+|+.. +.+..+. ..+++..++.|++|||++|.||+++|++|++.+..
T Consensus 81 ~S~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999988664 589999999999854 4455444 47888889999999999999999999999988854
No 63
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.94 E-value=1.3e-25 Score=212.55 Aligned_cols=151 Identities=27% Similarity=0.499 Sum_probs=133.4
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+.+.+...+.++.+.+++.+.+.+++..+.+++|||+|+++|..+++.+++++|++|+|||++++.+|
T Consensus 9 ~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 88 (161)
T cd04124 9 SAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITY 88 (161)
T ss_pred CCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHH
Confidence 99999999999999998888888888888887788888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
+.+..|+..+.+..+ .+|+++|+||+|+... ..++...++...+++++++||++|.|++++|+.+++.+.+
T Consensus 89 ~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 89 KNLSKWYEELREYRP-EIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred HHHHHHHHHHHHhCC-CCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999977543 4799999999998432 1344556777778899999999999999999999987754
No 64
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=1.2e-25 Score=218.80 Aligned_cols=153 Identities=26% Similarity=0.489 Sum_probs=133.7
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|.++.|...+.||++..+ ...+.+++..+.+.||||+|+++|..++..+++++|++|+|||++++.||
T Consensus 9 ~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf 87 (189)
T cd04134 9 GACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSL 87 (189)
T ss_pred CCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHH
Confidence 99999999999999999888899998775 34566778889999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCcc------------ccCHHHHHHHHHhcC-CeEEEEcCCCCCCHHHHH
Q psy3029 195 AAIK-TWVKELKRNVDEPLVLCVVGNKTDLESSR------------EVNREEAFHYSKSIG-GTYYETSALQDQGIEDVF 260 (617)
Q Consensus 195 ~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~~------------~v~~~e~~~~~~~~g-~~~~evSAktg~gI~eLf 260 (617)
+.+. .|+..+....+ .+|++||+||+||...+ .+..+++..+++..+ +.|++|||++|.||+++|
T Consensus 88 ~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f 166 (189)
T cd04134 88 ENVESKWLGEIREHCP-GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAF 166 (189)
T ss_pred HHHHHHHHHHHHHhCC-CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHH
Confidence 9986 69999887654 58999999999996543 345667778888777 689999999999999999
Q ss_pred HHHHHHHHH
Q psy3029 261 LNVSKGLIC 269 (617)
Q Consensus 261 ~~I~~~l~~ 269 (617)
++|.+.+..
T Consensus 167 ~~l~~~~~~ 175 (189)
T cd04134 167 TEAARVALN 175 (189)
T ss_pred HHHHHHHhc
Confidence 999988764
No 65
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.94 E-value=1.4e-25 Score=212.19 Aligned_cols=153 Identities=32% Similarity=0.550 Sum_probs=135.3
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|++..+...+.++.+.. +.+.+.+++..+.+.+|||+|++++..++..+++.+|++++|||++++.+|
T Consensus 9 ~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 87 (164)
T smart00173 9 GGVGKSALTIQFVQGHFVDDYDPTIEDS-YRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSF 87 (164)
T ss_pred CCCCHHHHHHHHHhCcCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHH
Confidence 9999999999999998888888887744 456677788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 195 ~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
..+..|+..+.+.. ..++|+++|+||+|+..++.+..+++..+++.++++++++||++|.|++++|++|++.+.
T Consensus 88 ~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 88 EEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 99999988876643 235899999999999876777777888888888999999999999999999999988764
No 66
>KOG0083|consensus
Probab=99.94 E-value=9.6e-28 Score=210.05 Aligned_cols=160 Identities=36% Similarity=0.595 Sum_probs=148.9
Q ss_pred CCCCCCCHHHHHHHHHcCCCC-CccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCC
Q psy3029 112 WFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQ 190 (617)
Q Consensus 112 ~G~~nVGKSSLinrl~~~~~~-~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~ 190 (617)
+|.+++|||+|+-||..+.|. ....+|+|+++..+.+.+++..+++++|||+|+++|++....|++.+|+++++||+.+
T Consensus 3 lgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydian 82 (192)
T KOG0083|consen 3 LGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIAN 82 (192)
T ss_pred cccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeeccc
Confidence 344999999999999888774 4567899999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 191 YHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 191 ~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
..||+++..|+.+|.++....+.+.++|||+|+..++.+..++...+++.+++||+|+||++|.||+..|-.|.+.+.+.
T Consensus 83 kasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~ 162 (192)
T KOG0083|consen 83 KASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKL 162 (192)
T ss_pred chhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHh
Confidence 99999999999999999887788999999999988899999999999999999999999999999999999999988764
Q ss_pred h
Q psy3029 271 S 271 (617)
Q Consensus 271 ~ 271 (617)
.
T Consensus 163 ~ 163 (192)
T KOG0083|consen 163 K 163 (192)
T ss_pred c
Confidence 3
No 67
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.94 E-value=1.5e-25 Score=211.16 Aligned_cols=152 Identities=35% Similarity=0.689 Sum_probs=139.2
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|++..+...+.++.+.++..+.+.+++..+.+.+|||+|++++..++..+++.+|++|+|||++++.+|
T Consensus 9 ~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~ 88 (161)
T cd01861 9 QSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSF 88 (161)
T ss_pred CCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHH
Confidence 99999999999999998888889999998888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
+.+..|+..+......++|+++|+||+|+...+.+..++...+++..+++++++||+++.|+++++++|.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 89 DNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 999999999877655568999999999997666777788888888889999999999999999999999764
No 68
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.94 E-value=1.9e-25 Score=210.97 Aligned_cols=152 Identities=32% Similarity=0.532 Sum_probs=134.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|++..+...+.++.+.. ......+++..+.+.+|||+|++++..++..+++.+|++++|||++++.+|
T Consensus 11 ~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~ 89 (164)
T cd04145 11 GGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSF 89 (164)
T ss_pred CCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHH
Confidence 9999999999999998887888888754 355567788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 195 ~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
+.+..|+..+.+.. ..++|++||+||+|+..++.+..++..++++.++++++++||++|.||+++|++|++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 90 EEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 99999998887653 34689999999999987666777778888888889999999999999999999998754
No 69
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=1.1e-25 Score=220.25 Aligned_cols=158 Identities=29% Similarity=0.423 Sum_probs=131.6
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHH-HHHcC-----CCCCccCCCcce-eEEEEE--------E
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVV-RYIGK-----MFSHHISPTIGA-SFFTAK--------I 148 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLin-rl~~~-----~~~~~~~~t~g~-~~~~~~--------i 148 (617)
.+||+++|+ +|||||||+. +++++ .|...+.||+|. +.+... +
T Consensus 2 ~~Kiv~vG~----------------------~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~ 59 (195)
T cd01873 2 TIKCVVVGD----------------------NAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRD 59 (195)
T ss_pred ceEEEEECC----------------------CCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccce
Confidence 468999999 9999999996 66554 345677899873 433322 2
Q ss_pred EECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCeEEEEEECCCCCC--
Q psy3029 149 NVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDEPLVLCVVGNKTDLES-- 225 (617)
Q Consensus 149 ~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~-- 225 (617)
.+++..+.++||||+|++++ +...+++++|++|+|||++++.||+.+. .|+..+....+ .+|++|||||+||..
T Consensus 60 ~~~~~~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~ 136 (195)
T cd01873 60 VVDGVSVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYAD 136 (195)
T ss_pred eeCCEEEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccc
Confidence 56788999999999999763 4567899999999999999999999997 59999877654 579999999999863
Q ss_pred -----------------ccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 226 -----------------SREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 226 -----------------~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
.+.++.+++.+++++++++|+||||++|.||+++|+.+++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 137 LDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 36788899999999999999999999999999999998753
No 70
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.94 E-value=2.5e-25 Score=210.01 Aligned_cols=153 Identities=47% Similarity=0.833 Sum_probs=140.9
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+++.+...+.++.+.++..+.+.+++..+.+.+||++|++++..++..+++++|++|+|||++++.+|
T Consensus 10 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 89 (163)
T cd01860 10 SSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESF 89 (163)
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHH
Confidence 99999999999999998877889999888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
..+..|+..+.......+|+++|+||+|+...+.+..++...++..+++.++++||++|.|++++|++|++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 90 EKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999887656689999999999976666777888888998899999999999999999999998865
No 71
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.94 E-value=2.1e-25 Score=213.04 Aligned_cols=153 Identities=33% Similarity=0.624 Sum_probs=139.4
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccccc-ccchhhhccCCEEEEEEeCCChhh
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFR-SMAPMYYRNANAALLVFDITQYHS 193 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~-~~~~~~~~~ad~iIlV~Dis~~~S 193 (617)
+|||||||+++|+.+.+...+.++++.++..+.+.+++..+.+.+|||+|++++. .++..+++++|++++|||++++.+
T Consensus 11 ~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 90 (170)
T cd04115 11 SNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMAS 90 (170)
T ss_pred CCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHH
Confidence 9999999999999999888889999999888888899989999999999999886 578889999999999999999999
Q ss_pred HHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCC---CCCHHHHHHHHHHHH
Q psy3029 194 FAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQ---DQGIEDVFLNVSKGL 267 (617)
Q Consensus 194 ~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAkt---g~gI~eLf~~I~~~l 267 (617)
|..+..|+..+.... ...+|++||+||+|+...+++..+++.++++..+++|+++||++ +.||+++|..+++.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 91 FHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred HHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 999999999887754 35689999999999987778888888889998889999999999 899999999998765
No 72
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.94 E-value=2.6e-25 Score=218.20 Aligned_cols=155 Identities=24% Similarity=0.296 Sum_probs=131.3
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccc--------cchhhhccCCEEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRS--------MAPMYYRNANAALLVF 186 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~--------~~~~~~~~ad~iIlV~ 186 (617)
+|||||||+++|+++.|...+.||.+.+++...+.+++..+.+.||||+|..++.. ....+++.+|++|+||
T Consensus 9 ~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~ 88 (198)
T cd04142 9 PGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVY 88 (198)
T ss_pred CCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEE
Confidence 99999999999999999888999998877777777888889999999999765432 1334578999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcC---CCCCeEEEEEECCCCCCccccCHHHHHHHHH-hcCCeEEEEcCCCCCCHHHHHHH
Q psy3029 187 DITQYHSFAAIKTWVKELKRNV---DEPLVLCVVGNKTDLESSREVNREEAFHYSK-SIGGTYYETSALQDQGIEDVFLN 262 (617)
Q Consensus 187 Dis~~~S~~~l~~~l~~i~~~~---~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~-~~g~~~~evSAktg~gI~eLf~~ 262 (617)
|++++.||+.+..|+..+.+.. ..++|++||+||+|+...+.+..++...++. .++++|+++||++|.||+++|+.
T Consensus 89 D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~ 168 (198)
T cd04142 89 DICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKE 168 (198)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHH
Confidence 9999999999999998887754 3568999999999997766666776766654 56889999999999999999999
Q ss_pred HHHHHHH
Q psy3029 263 VSKGLIC 269 (617)
Q Consensus 263 I~~~l~~ 269 (617)
+++.+..
T Consensus 169 i~~~~~~ 175 (198)
T cd04142 169 LLISATT 175 (198)
T ss_pred HHHHhhc
Confidence 9987764
No 73
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.94 E-value=3.8e-25 Score=215.54 Aligned_cols=155 Identities=36% Similarity=0.635 Sum_probs=137.8
Q ss_pred CCCCHHHHHHHHHcCCCCC-ccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhh
Q psy3029 115 LGVGKTSMVVRYIGKMFSH-HISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHS 193 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~-~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S 193 (617)
+|||||||+++|+++.+.. .+.+|+|.++..+.+.+++..+.+.+||++|++++..++..+++++|++|+|||++++.+
T Consensus 9 ~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s 88 (193)
T cd04118 9 ESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSS 88 (193)
T ss_pred CCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHH
Confidence 9999999999999998864 688999998888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCc----cccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 194 FAAIKTWVKELKRNVDEPLVLCVVGNKTDLESS----REVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 194 ~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~----~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
|+.+..|+..+....+ ++|++||+||+|+... +.+..+++..++..++++++++||++|.|++++|++|.+.+..
T Consensus 89 ~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 89 FERAKFWVKELQNLEE-HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred HHHHHHHHHHHHhcCC-CCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999877543 5799999999998532 3455567778888888999999999999999999999988865
Q ss_pred h
Q psy3029 270 L 270 (617)
Q Consensus 270 ~ 270 (617)
.
T Consensus 168 ~ 168 (193)
T cd04118 168 R 168 (193)
T ss_pred h
Confidence 4
No 74
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.94 E-value=3.1e-25 Score=209.79 Aligned_cols=152 Identities=28% Similarity=0.526 Sum_probs=134.6
Q ss_pred CCCCHHHHHHHHHcC--CCCCccCCCcceeEEEEEEEEC-CeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCCh
Q psy3029 115 LGVGKTSMVVRYIGK--MFSHHISPTIGASFFTAKINVG-ENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQY 191 (617)
Q Consensus 115 ~nVGKSSLinrl~~~--~~~~~~~~t~g~~~~~~~i~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~ 191 (617)
+|||||||+++|..+ .+...+.+|.|.++..+.+.+. +..+.+.+|||+|++.+..+++.+++++|++++|||++++
T Consensus 9 ~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 88 (164)
T cd04101 9 PAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNK 88 (164)
T ss_pred CCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCH
Confidence 999999999999864 6778899999999877777775 5679999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 192 HSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 192 ~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
.+|..+..|+..+.... ..+|+++|+||+|+..+.++...++..+...++++++++||+++.|++++|+.|.+.+
T Consensus 89 ~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 89 ASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 99999999999987765 3479999999999977777777677777778889999999999999999999998754
No 75
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.94 E-value=4e-26 Score=240.50 Aligned_cols=220 Identities=20% Similarity=0.144 Sum_probs=166.7
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccc---------cccchhhhccCCEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERF---------RSMAPMYYRNANAALLV 185 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~---------~~~~~~~~~~ad~iIlV 185 (617)
||||||||+|||++.+ .+.+..++|+++++...........|.++||+|.+.. ..+...++..||++|||
T Consensus 12 PNVGKSTLFNRL~g~r-~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfv 90 (444)
T COG1160 12 PNVGKSTLFNRLTGRR-IAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFV 90 (444)
T ss_pred CCCcHHHHHHHHhCCe-eeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEE
Confidence 9999999999999988 6778888999888776655555567999999997632 23456678899999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHH
Q psy3029 186 FDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVS 264 (617)
Q Consensus 186 ~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~ 264 (617)
+|....-+- .++.+..+.+ ..++|+|+|+||+|.... .+...+|+ .+|+ .++.+||.||.|+.+|++.++
T Consensus 91 VD~~~Git~--~D~~ia~~Lr--~~~kpviLvvNK~D~~~~----e~~~~efy-slG~g~~~~ISA~Hg~Gi~dLld~v~ 161 (444)
T COG1160 91 VDGREGITP--ADEEIAKILR--RSKKPVILVVNKIDNLKA----EELAYEFY-SLGFGEPVPISAEHGRGIGDLLDAVL 161 (444)
T ss_pred EeCCCCCCH--HHHHHHHHHH--hcCCCEEEEEEcccCchh----hhhHHHHH-hcCCCCceEeehhhccCHHHHHHHHH
Confidence 998775432 2333333333 234699999999997421 22233344 5666 799999999999999999998
Q ss_pred HHHHHhhhcccccccccccccCCccCCCCCCcccccCCCCCCCCCCc-hhhhheeeeccCCCCCCCcceeeeeeeccccc
Q psy3029 265 KGLICLSQESLHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLT-EAETAKFVVGLSINSRVPNCFEANWFWLGVGK 343 (617)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ss~~~~~~~-~~~~~v~ivG~~~~s~~~~~~~~~~g~~~vGK 343 (617)
+.+. ..++.. ... ...+|++|||+| +|||
T Consensus 162 ~~l~-~~e~~~---------------------------------~~~~~~~ikiaiiGrP----------------NvGK 191 (444)
T COG1160 162 ELLP-PDEEEE---------------------------------EEEETDPIKIAIIGRP----------------NVGK 191 (444)
T ss_pred hhcC-Cccccc---------------------------------ccccCCceEEEEEeCC----------------CCCc
Confidence 8763 111100 000 246899999999 9999
Q ss_pred ccceeccccCc-ccCccCCccceeeEEEEEEECCEEEEEEeecCCCceeeec
Q psy3029 344 TSMVVRYIGKM-FSHHISPTIGASFFTAKINVGENKVKLQLRTGLKVSKIPV 394 (617)
Q Consensus 344 ssi~~~~~~~~-f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~~~~~~~ 394 (617)
|++++++++.. ......|.+..|.....++++++.+.|--++|++.|....
T Consensus 192 SsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~ 243 (444)
T COG1160 192 SSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKIT 243 (444)
T ss_pred hHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccc
Confidence 99999999654 5566678889999999999999999999999998776663
No 76
>KOG0081|consensus
Probab=99.94 E-value=5.1e-27 Score=211.38 Aligned_cols=159 Identities=33% Similarity=0.573 Sum_probs=146.0
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEEC---------CeEEEEEEEecCCcccccccchhhhccCCEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG---------ENKVKLQVWDTAGQERFRSMAPMYYRNANAALLV 185 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~---------~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV 185 (617)
+||||||++.++..++|......|+|++|..+.+..+ +..+.+++|||+|+|+|+.+.-.|++.|-++|++
T Consensus 18 SGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLi 97 (219)
T KOG0081|consen 18 SGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLI 97 (219)
T ss_pred CCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEE
Confidence 9999999999999999999999999999988877652 3568999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHH
Q psy3029 186 FDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVS 264 (617)
Q Consensus 186 ~Dis~~~S~~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~ 264 (617)
||+++..||.++..|+.+++.+.- .+..||++|||+||.+.+.+..+++.+++.++|+||||+||-+|.||++..+.|+
T Consensus 98 FDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~Ll 177 (219)
T KOG0081|consen 98 FDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLL 177 (219)
T ss_pred EeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHH
Confidence 999999999999999999877642 3457999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhc
Q psy3029 265 KGLICLSQE 273 (617)
Q Consensus 265 ~~l~~~~~~ 273 (617)
..+.+..+.
T Consensus 178 dlvM~Rie~ 186 (219)
T KOG0081|consen 178 DLVMKRIEQ 186 (219)
T ss_pred HHHHHHHHH
Confidence 988877654
No 77
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.93 E-value=3.6e-25 Score=214.50 Aligned_cols=155 Identities=27% Similarity=0.469 Sum_probs=134.6
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEEC-CeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhh
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG-ENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHS 193 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S 193 (617)
+|||||||+++|+++.+...+.++++.++.. .+... +..+.+.+|||+|+++|..++..+++++|++|+|||++++.|
T Consensus 9 ~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s 87 (187)
T cd04132 9 GGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTS 87 (187)
T ss_pred CCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHH
Confidence 9999999999999999988888998877644 34454 678899999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCc----cccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 194 FAAIK-TWVKELKRNVDEPLVLCVVGNKTDLESS----REVNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 194 ~~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~----~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~~l 267 (617)
|+.+. .|+..+.... .++|++||+||+|+... +.+..+++.+++..+++ +++++||++|.||+++|..+++.+
T Consensus 88 ~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 88 LDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred HHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 99986 5988877654 35799999999999653 24567788889999998 999999999999999999999888
Q ss_pred HHhh
Q psy3029 268 ICLS 271 (617)
Q Consensus 268 ~~~~ 271 (617)
....
T Consensus 167 ~~~~ 170 (187)
T cd04132 167 LKKE 170 (187)
T ss_pred Hhhh
Confidence 7644
No 78
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.93 E-value=3.7e-25 Score=211.49 Aligned_cols=156 Identities=30% Similarity=0.532 Sum_probs=135.5
Q ss_pred CCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCC
Q psy3029 111 NWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQ 190 (617)
Q Consensus 111 i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~ 190 (617)
|+|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||+|+++|..++..+++++|++|+|||+++
T Consensus 3 i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 81 (174)
T smart00174 3 VVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDS 81 (174)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCC
Confidence 334499999999999999999888888887554 4566778888999999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCcc------------ccCHHHHHHHHHhcCC-eEEEEcCCCCCCH
Q psy3029 191 YHSFAAIK-TWVKELKRNVDEPLVLCVVGNKTDLESSR------------EVNREEAFHYSKSIGG-TYYETSALQDQGI 256 (617)
Q Consensus 191 ~~S~~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~~------------~v~~~e~~~~~~~~g~-~~~evSAktg~gI 256 (617)
+.||+.+. .|+..+....+ ++|++||+||+|+..+. .+..+++.++++.++. .+++|||++|.||
T Consensus 82 ~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 160 (174)
T smart00174 82 PASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV 160 (174)
T ss_pred HHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence 99999986 69999887654 57999999999996532 3677888889999987 9999999999999
Q ss_pred HHHHHHHHHHHH
Q psy3029 257 EDVFLNVSKGLI 268 (617)
Q Consensus 257 ~eLf~~I~~~l~ 268 (617)
+++|+.|++.+.
T Consensus 161 ~~lf~~l~~~~~ 172 (174)
T smart00174 161 REVFEEAIRAAL 172 (174)
T ss_pred HHHHHHHHHHhc
Confidence 999999988763
No 79
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.93 E-value=6.6e-25 Score=207.60 Aligned_cols=145 Identities=23% Similarity=0.396 Sum_probs=124.1
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+.+|+.+.|...+.|+ +..+ ...+.+++..+.+.+|||+|++. ..+++++|++++|||++++.||
T Consensus 9 ~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf 81 (158)
T cd04103 9 LQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASF 81 (158)
T ss_pred CCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHH
Confidence 999999999999998887766555 3343 46778888889999999999975 3567899999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCeEEEEEECCCCC--CccccCHHHHHHHHHhc-CCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVD-EPLVLCVVGNKTDLE--SSREVNREEAFHYSKSI-GGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~--~~~~v~~~e~~~~~~~~-g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
+.+..|+..+..... ..+|++|||||+|+. ..+.+..+++.+++++. ++.|++|||++|.||+++|..+++.
T Consensus 82 ~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 82 QTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 999999999987653 458999999999985 35678888888899876 4899999999999999999998764
No 80
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.93 E-value=1.5e-24 Score=203.76 Aligned_cols=153 Identities=46% Similarity=0.824 Sum_probs=137.8
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|++..+...+.++.+.++....+...+..+.+.+||++|++.+..+++.+++++|++++|||++++.++
T Consensus 9 ~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 88 (162)
T cd04123 9 GRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSF 88 (162)
T ss_pred CCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHH
Confidence 99999999999999988777777877777777777778888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
..+..|+..+......++|+++|+||+|+...+.+..++..++++.++++++++||+++.|+++++++|.+.+
T Consensus 89 ~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 89 QKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 9999999998887666789999999999987677777778888888899999999999999999999998764
No 81
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.93 E-value=9.3e-25 Score=221.28 Aligned_cols=152 Identities=24% Similarity=0.427 Sum_probs=133.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+++.|...+.+|++ ++..+.+.+++..+.+.||||+|++.|..+...++..+|++|+|||+++++||
T Consensus 9 ~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf 87 (247)
T cd04143 9 SKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESF 87 (247)
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHH
Confidence 99999999999999999888889987 56677788888899999999999999988888899999999999999999999
Q ss_pred HHHHHHHHHHHhc---------CCCCCeEEEEEECCCCCCccccCHHHHHHHHHh-cCCeEEEEcCCCCCCHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRN---------VDEPLVLCVVGNKTDLESSREVNREEAFHYSKS-IGGTYYETSALQDQGIEDVFLNVS 264 (617)
Q Consensus 195 ~~l~~~l~~i~~~---------~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~-~g~~~~evSAktg~gI~eLf~~I~ 264 (617)
+.+..|+..+.+. ...++|+|||+||+|+..++++..+++.+++.. .++.++++||++|.||+++|++|+
T Consensus 88 ~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~ 167 (247)
T cd04143 88 EEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF 167 (247)
T ss_pred HHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999888653 224589999999999976667777777777653 467899999999999999999998
Q ss_pred HHH
Q psy3029 265 KGL 267 (617)
Q Consensus 265 ~~l 267 (617)
...
T Consensus 168 ~~~ 170 (247)
T cd04143 168 SLA 170 (247)
T ss_pred HHh
Confidence 754
No 82
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=8.7e-25 Score=208.96 Aligned_cols=161 Identities=17% Similarity=0.224 Sum_probs=139.4
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCC-CccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~-~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
.+||+++|+ +|||||||+++|+++.|. ..+.||.+.++....+.+++..+.+.+||+
T Consensus 4 ~~kv~~vG~----------------------~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~ 61 (169)
T cd01892 4 VFLCFVLGA----------------------KGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREV 61 (169)
T ss_pred EEEEEEECC----------------------CCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEec
Confidence 478999999 999999999999999988 889999999887777888888889999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
+|++++..+...+++++|++|+|||++++.+|+.+..|+..+... .++|+++|+||+|+...+.+...+..++++.++
T Consensus 62 ~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 139 (169)
T cd01892 62 GEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLG 139 (169)
T ss_pred CCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcC
Confidence 999999999999999999999999999999999998998876432 358999999999996555443444567788888
Q ss_pred C-eEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 243 G-TYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 243 ~-~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
+ .++++||++|.|++++|+.|.+.+.
T Consensus 140 ~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 140 LPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred CCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 7 4799999999999999999988764
No 83
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.93 E-value=1.4e-24 Score=207.84 Aligned_cols=148 Identities=30% Similarity=0.545 Sum_probs=130.3
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|.++.|...+.+|. .+++...+.+++..+.+++|||+|++++..++..+++++|++|+|||++++.+|
T Consensus 9 ~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf 87 (173)
T cd04130 9 GAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSF 87 (173)
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHH
Confidence 9999999999999999988888886 455666778888889999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHhcCCCCCeEEEEEECCCCCC------------ccccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHH
Q psy3029 195 AAIK-TWVKELKRNVDEPLVLCVVGNKTDLES------------SREVNREEAFHYSKSIGG-TYYETSALQDQGIEDVF 260 (617)
Q Consensus 195 ~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~------------~~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf 260 (617)
+.+. .|+..+....+ .+|+++|+||+|+.. ++.+..+++..+++..+. .|+++||++|.||+++|
T Consensus 88 ~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf 166 (173)
T cd04130 88 QNISEKWIPEIRKHNP-KAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166 (173)
T ss_pred HHHHHHHHHHHHhhCC-CCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH
Confidence 9985 69988876443 479999999999863 356777888899999988 99999999999999999
Q ss_pred HHHH
Q psy3029 261 LNVS 264 (617)
Q Consensus 261 ~~I~ 264 (617)
+.++
T Consensus 167 ~~~~ 170 (173)
T cd04130 167 DTAI 170 (173)
T ss_pred HHHH
Confidence 8875
No 84
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.93 E-value=1.2e-24 Score=206.48 Aligned_cols=153 Identities=29% Similarity=0.503 Sum_probs=132.3
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccc-cccchhhhccCCEEEEEEeCCChhh
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERF-RSMAPMYYRNANAALLVFDITQYHS 193 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~-~~~~~~~~~~ad~iIlV~Dis~~~S 193 (617)
+|||||||+++|+.+.+...+.++.+..+ .+.+.+++..+.+++||++|++++ ......+++.+|++|+|||++++.|
T Consensus 8 ~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 86 (165)
T cd04146 8 SGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSS 86 (165)
T ss_pred CCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHH
Confidence 99999999999999888777888876543 556678888899999999999853 4567788999999999999999999
Q ss_pred HHHHHHHHHHHHhcC--CCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCC-CCHHHHHHHHHHHHH
Q psy3029 194 FAAIKTWVKELKRNV--DEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQD-QGIEDVFLNVSKGLI 268 (617)
Q Consensus 194 ~~~l~~~l~~i~~~~--~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg-~gI~eLf~~I~~~l~ 268 (617)
|+.+..|+..+.... ..++|+++|+||+|+...+.+..+++..+++.++++|+++||++| .||+++|..|++.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 87 FDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 999999998887754 345899999999999777777888888999999999999999999 599999999987653
No 85
>PLN03118 Rab family protein; Provisional
Probab=99.93 E-value=2.5e-24 Score=213.32 Aligned_cols=164 Identities=38% Similarity=0.685 Sum_probs=144.3
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
.+||+++|+ +|||||||+++|++..+ ..+.++.|.++....+.+++..+.+.||||+
T Consensus 14 ~~kv~ivG~----------------------~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~ 70 (211)
T PLN03118 14 SFKILLIGD----------------------SGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTA 70 (211)
T ss_pred ceEEEEECc----------------------CCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECC
Confidence 478999999 99999999999998876 4678999988888888888888999999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHHHH-HHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~-~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
|+++|..++..+++++|++|+|||++++.+|..+.. |...+.... ...+|++||+||+|+...+.+..++...++..+
T Consensus 71 G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~ 150 (211)
T PLN03118 71 GQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEH 150 (211)
T ss_pred CchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHc
Confidence 999999999999999999999999999999999976 666665443 245799999999999877777778888888889
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
++.|+++||+++.|++++|++|...+...
T Consensus 151 ~~~~~e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 151 GCLFLECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988654
No 86
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.93 E-value=2.7e-24 Score=202.71 Aligned_cols=151 Identities=38% Similarity=0.721 Sum_probs=135.7
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|++..+...+.++.+.++....+.+.+..+.+.+||++|++.+..+...+++.+|++|+|||++++.+|
T Consensus 9 ~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 88 (161)
T cd01863 9 SGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTF 88 (161)
T ss_pred CCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHH
Confidence 99999999999999988777889999988877788888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 195 ~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
..+..|+..+..+. ...+|+++|+||+|+.. ..+..++...++...+++++++||++|.|++++++.+.+.
T Consensus 89 ~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 89 TNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred HhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 99999999988765 35689999999999963 4456677888998899999999999999999999998764
No 87
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.93 E-value=2.9e-24 Score=204.67 Aligned_cols=154 Identities=31% Similarity=0.610 Sum_probs=137.2
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|.++.+...+.++++.. ..+.+.+++..+.+++|||+|+++|..+++.+++.++++++|||++++.+|
T Consensus 10 ~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~ 88 (168)
T cd04177 10 GGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASL 88 (168)
T ss_pred CCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHH
Confidence 9999999999999999888888888755 466777888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC-CeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG-GTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 195 ~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g-~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
+.+..|...+.+.. ..++|+++|+||+|+...+.+..++...+++.++ ++++++||+++.|++++|++|+.++..
T Consensus 89 ~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~~ 165 (168)
T cd04177 89 NELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQIIC 165 (168)
T ss_pred HHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 99999998887643 3468999999999998777777777888888888 799999999999999999999987754
No 88
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.93 E-value=3.3e-24 Score=204.01 Aligned_cols=156 Identities=39% Similarity=0.692 Sum_probs=138.2
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|.+..+...+.++++.++..+.+.+.+..+.+.+||++|++.+..++..+++++|++|+|||++++.+|
T Consensus 9 ~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~ 88 (172)
T cd01862 9 SGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSF 88 (172)
T ss_pred CCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHH
Confidence 99999999999999998888889999888888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC----CCCeEEEEEECCCCCCccccCHHHHHHHHHhcC-CeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVD----EPLVLCVVGNKTDLESSREVNREEAFHYSKSIG-GTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~----~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g-~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
..+..|...+..... .++|+++|+||+|+..++.+..++...+++..+ .+++++||++|.|++++|++|.+.+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 89 ESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred HHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999889887655442 358999999999997656666777778888887 699999999999999999999988765
Q ss_pred h
Q psy3029 270 L 270 (617)
Q Consensus 270 ~ 270 (617)
.
T Consensus 169 ~ 169 (172)
T cd01862 169 Q 169 (172)
T ss_pred c
Confidence 3
No 89
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.92 E-value=3.5e-24 Score=204.71 Aligned_cols=151 Identities=30% Similarity=0.543 Sum_probs=131.1
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+.+.+...+.++.+.. ....+.+++..+.+.+|||+|+++|..++..+++++|++|+|||++++.+|
T Consensus 9 ~~~GKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~ 87 (174)
T cd04135 9 GAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASF 87 (174)
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHH
Confidence 9999999999999999888888887644 455677788889999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCc------------cccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHH
Q psy3029 195 AAIK-TWVKELKRNVDEPLVLCVVGNKTDLESS------------REVNREEAFHYSKSIGG-TYYETSALQDQGIEDVF 260 (617)
Q Consensus 195 ~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~------------~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf 260 (617)
+.+. .|+..+... ...+|++||+||+|+.+. +.+..+++..+++.+++ ++++|||++|.||+++|
T Consensus 88 ~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f 166 (174)
T cd04135 88 QNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVF 166 (174)
T ss_pred HHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHH
Confidence 9985 688888765 455899999999998543 25667788889998886 89999999999999999
Q ss_pred HHHHHHH
Q psy3029 261 LNVSKGL 267 (617)
Q Consensus 261 ~~I~~~l 267 (617)
+.++..+
T Consensus 167 ~~~~~~~ 173 (174)
T cd04135 167 DEAILAI 173 (174)
T ss_pred HHHHHHh
Confidence 9998764
No 90
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.92 E-value=3.9e-24 Score=213.48 Aligned_cols=154 Identities=23% Similarity=0.328 Sum_probs=133.8
Q ss_pred CCCCHHHHHHHHHcCCCC-CccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhc-cCCEEEEEEeCCChh
Q psy3029 115 LGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYR-NANAALLVFDITQYH 192 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~-~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~-~ad~iIlV~Dis~~~ 192 (617)
+|||||||+++|+.+.+. ..+.++.+.+++.+.+.+++..+.+.+|||+|++. .....++. ++|++|+|||++++.
T Consensus 9 ~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iilV~d~td~~ 86 (221)
T cd04148 9 PGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVVVYSVTDRS 86 (221)
T ss_pred CCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEEEEECCCHH
Confidence 999999999999988876 67778877677888888888899999999999983 23445666 899999999999999
Q ss_pred hHHHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 193 SFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 193 S~~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
+|+.+.+|+..+..... .++|+|||+||+|+...+.+..+++.+++..++++++++||+++.||+++|++|+..+...
T Consensus 87 S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~ 165 (221)
T cd04148 87 SFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLR 165 (221)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999998877542 4689999999999987777888888888888899999999999999999999999888643
No 91
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=8.7e-24 Score=200.89 Aligned_cols=153 Identities=40% Similarity=0.700 Sum_probs=137.2
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+.+.+...+.++++.++..+.+.+.+..+.+.+||++|++.+...+..+++.+|++++|||++++.+|
T Consensus 16 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 95 (169)
T cd04114 16 AGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESF 95 (169)
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHH
Confidence 99999999999998888777888998888888888888889999999999999998889999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
..+..|+..+.......+|+++|+||+|+...+++..+....+.+.....++++||++|.|++++|+.|.+.+
T Consensus 96 ~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 96 RCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999988777666689999999999987777777667777777778999999999999999999998754
No 92
>KOG0395|consensus
Probab=99.92 E-value=3e-24 Score=209.50 Aligned_cols=154 Identities=32% Similarity=0.531 Sum_probs=144.7
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||+|+.+|+...|...|.||++ +.+.+.+.+++..+.+.|+||+|+++|..+...++.+++++++||+++++.||
T Consensus 12 ~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF 90 (196)
T KOG0395|consen 12 GGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSF 90 (196)
T ss_pred CCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHH
Confidence 99999999999999999999999998 56888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 195 ~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
+.+..++..|.+.. ...+|+++||||+|+...+++..+++..++..++++|+|+||+.+.+|+++|..|++.+..
T Consensus 91 ~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 91 EEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred HHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 99999999985533 3568999999999999889999999999999999999999999999999999999998865
No 93
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.92 E-value=8.3e-24 Score=196.94 Aligned_cols=150 Identities=45% Similarity=0.787 Sum_probs=137.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|.+..+...+.+|.+.++....+...+..+.+.+||++|++.+......+++++|++|+|||+++++++
T Consensus 9 ~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~ 88 (159)
T cd00154 9 SGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESF 88 (159)
T ss_pred CCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHH
Confidence 99999999999999998888889999999888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVS 264 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~ 264 (617)
..+..|+..+.......+|+++|+||+|+..+.....++..+++...+++++++||+++.|+++++++|.
T Consensus 89 ~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 89 ENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 9999999998887655689999999999975566677888889988899999999999999999999875
No 94
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=3.9e-24 Score=236.47 Aligned_cols=214 Identities=22% Similarity=0.237 Sum_probs=150.3
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccc--------ccccchhhhccCCEEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQER--------FRSMAPMYYRNANAALLVF 186 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~--------~~~~~~~~~~~ad~iIlV~ 186 (617)
+|||||||+|+|++... ..+.+++|+++......+......+.+|||+|++. +..+...+++.+|++|+||
T Consensus 47 ~nvGKSSL~nrl~~~~~-~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~Vv 125 (472)
T PRK03003 47 PNVGKSTLVNRILGRRE-AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVV 125 (472)
T ss_pred CCCCHHHHHHHHhCcCc-ccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 99999999999998764 34455666665444443332335688999999763 3344566788999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHH
Q psy3029 187 DITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 187 Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~ 265 (617)
|+++..++.. ..|+..+.. .++|+++|+||+|+.... .+.. ++. .+++ ..++|||++|.|++++|++|+.
T Consensus 126 D~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~-~~~-~~g~~~~~~iSA~~g~gi~eL~~~i~~ 196 (472)
T PRK03003 126 DATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAA-ALW-SLGLGEPHPVSALHGRGVGDLLDAVLA 196 (472)
T ss_pred ECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhH-HHH-hcCCCCeEEEEcCCCCCcHHHHHHHHh
Confidence 9998766543 234444433 347999999999985421 1222 222 2343 4579999999999999999987
Q ss_pred HHHHhhhcccccccccccccCCccCCCCCCcccccCCCCCCCCCCchhhhheeeeccCCCCCCCcceeeeeeeccccccc
Q psy3029 266 GLICLSQESLHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLTEAETAKFVVGLSINSRVPNCFEANWFWLGVGKTS 345 (617)
Q Consensus 266 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ss~~~~~~~~~~~~v~ivG~~~~s~~~~~~~~~~g~~~vGKss 345 (617)
.+...... .+.....++++++|+| ++|||+
T Consensus 197 ~l~~~~~~----------------------------------~~~~~~~~kI~iiG~~----------------nvGKSS 226 (472)
T PRK03003 197 ALPEVPRV----------------------------------GSASGGPRRVALVGKP----------------NVGKSS 226 (472)
T ss_pred hccccccc----------------------------------ccccccceEEEEECCC----------------CCCHHH
Confidence 76321000 0000123678888888 999999
Q ss_pred ceeccccCcc-cCccCCccceeeEEEEEEECCEEEEEEeecCCC
Q psy3029 346 MVVRYIGKMF-SHHISPTIGASFFTAKINVGENKVKLQLRTGLK 388 (617)
Q Consensus 346 i~~~~~~~~f-~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~ 388 (617)
++++++...+ .....|+++.++..+.+.++++.+.|--++|+.
T Consensus 227 Lin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~ 270 (472)
T PRK03003 227 LLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLR 270 (472)
T ss_pred HHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCcc
Confidence 9999998765 344568888999889999999999887777764
No 95
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.92 E-value=1.8e-23 Score=197.01 Aligned_cols=153 Identities=34% Similarity=0.545 Sum_probs=134.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+...+...+.++.+.. ..+...+++..+.+.+||++|++++..++..+++.++++++|||++++.+|
T Consensus 9 ~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 87 (164)
T cd04139 9 GGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESF 87 (164)
T ss_pred CCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHH
Confidence 9999999999999998888888887755 455667788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 195 ~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
..+..|+..+.... ..++|+++|+||+|+...+....++...++..++++++++||++|.|++++|++|.+.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 88 TATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 99999988887763 246899999999999765555667777888888999999999999999999999988764
No 96
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.91 E-value=2.7e-23 Score=198.82 Aligned_cols=151 Identities=30% Similarity=0.551 Sum_probs=128.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+++.+...+.+|++..+. ..+.+++..+.+.+|||+|+++|..++..++.++|++++|||++++++|
T Consensus 10 ~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~ 88 (175)
T cd01870 10 GACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSL 88 (175)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHH
Confidence 999999999999999988888899886653 4567788889999999999999998888899999999999999999999
Q ss_pred HHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCc------------cccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHH
Q psy3029 195 AAIK-TWVKELKRNVDEPLVLCVVGNKTDLESS------------REVNREEAFHYSKSIGG-TYYETSALQDQGIEDVF 260 (617)
Q Consensus 195 ~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~------------~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf 260 (617)
+.+. .|+..+.+... ++|+++|+||+|+... ..+...++.++++.++. ++++|||++|.||+++|
T Consensus 89 ~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf 167 (175)
T cd01870 89 ENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVF 167 (175)
T ss_pred HHHHHHHHHHHHhhCC-CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHH
Confidence 9885 58888776543 5799999999998542 23445667788887775 89999999999999999
Q ss_pred HHHHHHH
Q psy3029 261 LNVSKGL 267 (617)
Q Consensus 261 ~~I~~~l 267 (617)
++|.+.+
T Consensus 168 ~~l~~~~ 174 (175)
T cd01870 168 EMATRAA 174 (175)
T ss_pred HHHHHHh
Confidence 9998643
No 97
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.91 E-value=2e-23 Score=199.36 Aligned_cols=154 Identities=19% Similarity=0.272 Sum_probs=123.4
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|. +|||||||+++|..+.+. .+.||+|.++... . ...+.+++|||
T Consensus 8 ~~~kv~i~G~----------------------~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~--~--~~~~~~~l~Dt 60 (168)
T cd04149 8 KEMRILMLGL----------------------DAAGKTTILYKLKLGQSV-TTIPTVGFNVETV--T--YKNVKFNVWDV 60 (168)
T ss_pred CccEEEEECc----------------------CCCCHHHHHHHHccCCCc-cccCCcccceEEE--E--ECCEEEEEEEC
Confidence 3568888888 999999999999987764 4678888776432 2 24688999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHH--
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSK-- 239 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~-- 239 (617)
+|++++..+++.+++++|++|+|||++++.+|..+.+|+..+.... ..++|++||+||+|+... +..+++..++.
T Consensus 61 ~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~ 138 (168)
T cd04149 61 GGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLT 138 (168)
T ss_pred CCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCC
Confidence 9999999999999999999999999999999999988887765432 245799999999998642 34555555442
Q ss_pred ---hcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy3029 240 ---SIGGTYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 240 ---~~g~~~~evSAktg~gI~eLf~~I~~ 265 (617)
...+.++++||++|.||+++|++|.+
T Consensus 139 ~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 139 RIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred ccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 12347899999999999999999864
No 98
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.91 E-value=5e-23 Score=192.97 Aligned_cols=153 Identities=34% Similarity=0.543 Sum_probs=135.4
Q ss_pred CCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChh
Q psy3029 113 FWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYH 192 (617)
Q Consensus 113 G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~ 192 (617)
|.+|||||||+++|++..+...+.++.+ +...+.+...+..+.+++||++|++.+..++..+++.+|++++|||+++++
T Consensus 6 G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 84 (160)
T cd00876 6 GAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRE 84 (160)
T ss_pred CCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 3399999999999998888888888877 556667777777899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 193 SFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 193 S~~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
++..+..|+..+..... ..+|+++|+||+|+...+.+..+++..+++.++++++++||+++.|+++++++|.+.
T Consensus 85 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 85 SFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 99999999888877654 468999999999998767777788888988888999999999999999999999864
No 99
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.90 E-value=9.6e-23 Score=198.02 Aligned_cols=153 Identities=29% Similarity=0.538 Sum_probs=130.6
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+||++|++.+......+++++|++|+|||++++++|
T Consensus 10 ~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~ 88 (187)
T cd04129 10 GACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSL 88 (187)
T ss_pred CCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHH
Confidence 999999999999988887777787765543 4566777888999999999998888777888999999999999999999
Q ss_pred HHHH-HHHHHHHhcCCCCCeEEEEEECCCCCC----------ccccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHH
Q psy3029 195 AAIK-TWVKELKRNVDEPLVLCVVGNKTDLES----------SREVNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLN 262 (617)
Q Consensus 195 ~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~----------~~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~ 262 (617)
+.+. .|+..+....+ ++|++||+||+|+.. .+.+..+++..+++.++. ++|+|||++|.||+++|+.
T Consensus 89 ~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 167 (187)
T cd04129 89 ENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEA 167 (187)
T ss_pred HHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHH
Confidence 9996 69999887655 489999999999854 234556778888999985 8999999999999999999
Q ss_pred HHHHHHH
Q psy3029 263 VSKGLIC 269 (617)
Q Consensus 263 I~~~l~~ 269 (617)
+.+.+..
T Consensus 168 l~~~~~~ 174 (187)
T cd04129 168 ATRAALL 174 (187)
T ss_pred HHHHHhc
Confidence 9987754
No 100
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.90 E-value=1.5e-23 Score=198.31 Aligned_cols=144 Identities=21% Similarity=0.307 Sum_probs=112.7
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|..+.+. .+.||+|.++.. +.. ..+.+.+||++|++++..++..+++++|++|+|||++++.+|
T Consensus 9 ~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~ 83 (159)
T cd04150 9 DAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERI 83 (159)
T ss_pred CCCCHHHHHHHHhcCCCc-ccCCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHH
Confidence 999999999999888876 478898876532 222 468899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCCCCeEEEEEECCCCCCccccCHHHH-HHHH----HhcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRN-VDEPLVLCVVGNKTDLESSREVNREEA-FHYS----KSIGGTYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 195 ~~l~~~l~~i~~~-~~~~iPvIlVgNK~DL~~~~~v~~~e~-~~~~----~~~g~~~~evSAktg~gI~eLf~~I~~ 265 (617)
+.+.+|+..+... ....+|++||+||+|+... ...++. ..+. ....+.++++||++|.||+++|++|.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 84 GEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 9998888776542 2234799999999998542 222222 2221 122346789999999999999999853
No 101
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.90 E-value=1.3e-23 Score=199.76 Aligned_cols=146 Identities=18% Similarity=0.254 Sum_probs=122.2
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|++..+...+.||+|.+. ..++...+.+.+||++|++++..++..+++++|++|+|||++++.+|
T Consensus 8 ~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~ 83 (164)
T cd04162 8 DGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERL 83 (164)
T ss_pred CCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHH
Confidence 99999999999999888888889998653 23445678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCH----HHHHHHHHhcCCeEEEEcCCC------CCCHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNR----EEAFHYSKSIGGTYYETSALQ------DQGIEDVFLNVS 264 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~----~e~~~~~~~~g~~~~evSAkt------g~gI~eLf~~I~ 264 (617)
..+..|+..+.... .++|++||+||+|+...+.+.. .++..++++.++.++++||++ ++||+++|+.++
T Consensus 84 ~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 84 PLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred HHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 99999988886544 4589999999999976543321 123456667788899999998 999999999876
Q ss_pred H
Q psy3029 265 K 265 (617)
Q Consensus 265 ~ 265 (617)
.
T Consensus 163 ~ 163 (164)
T cd04162 163 N 163 (164)
T ss_pred c
Confidence 3
No 102
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.90 E-value=6.2e-23 Score=195.94 Aligned_cols=148 Identities=22% Similarity=0.317 Sum_probs=120.7
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|++..+. .+.||+|..+.. +. ...+.+.+|||+|++++..++..+++++|++++|||++++.+|
T Consensus 8 ~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~~--~~--~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~ 82 (169)
T cd04158 8 DGAGKTTILFKLKQDEFM-QPIPTIGFNVET--VE--YKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRV 82 (169)
T ss_pred CCCCHHHHHHHHhcCCCC-CcCCcCceeEEE--EE--ECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHH
Confidence 999999999999998765 478888876543 22 2468899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC------CeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG------GTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 195 ~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g------~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
..+..|+..+.+.. ..+.|++||+||+|+.. .+..+++.+++.... +.++++||++|.||+++|++|.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 83 SEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 99999988886542 23479999999999864 355666666654222 2688999999999999999998876
Q ss_pred HH
Q psy3029 268 IC 269 (617)
Q Consensus 268 ~~ 269 (617)
..
T Consensus 161 ~~ 162 (169)
T cd04158 161 VA 162 (169)
T ss_pred hh
Confidence 54
No 103
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.90 E-value=9.6e-23 Score=199.93 Aligned_cols=153 Identities=25% Similarity=0.398 Sum_probs=129.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+.+.+...+.++.+ ++....+.+.+..+.+++||++|+.+|..++..++..+|++|+|||++++.+|
T Consensus 8 ~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~ 86 (198)
T cd04147 8 AGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESF 86 (198)
T ss_pred CCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHH
Confidence 99999999999999998887878875 45566777788889999999999999998889999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCeEEEEEECCCCCC-ccccCHHHHHHHHH-hcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVD-EPLVLCVVGNKTDLES-SREVNREEAFHYSK-SIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~-~~~v~~~e~~~~~~-~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
+.+..|+..+..... ..+|++||+||+|+.. .+.+..++..+... .++.+++++||++|.||+++|++|++.+.
T Consensus 87 ~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 87 EEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 999999988877554 4689999999999865 35455544444443 45678999999999999999999998764
No 104
>KOG0393|consensus
Probab=99.90 E-value=1.1e-23 Score=201.83 Aligned_cols=164 Identities=31% Similarity=0.597 Sum_probs=147.8
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEEC-CeEEEEEEEe
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG-ENKVKLQVWD 161 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~-~~~~~l~i~D 161 (617)
..+|++|+|+ .+||||+|+..+..+.|...|.||+- +-+...+.++ +..+.+.+||
T Consensus 3 ~~~K~VvVGD----------------------ga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwD 59 (198)
T KOG0393|consen 3 RRIKCVVVGD----------------------GAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWD 59 (198)
T ss_pred eeeEEEEECC----------------------CCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeee
Confidence 3579999999 99999999999999999999999998 4567788895 9999999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCc------------cc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDEPLVLCVVGNKTDLESS------------RE 228 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~------------~~ 228 (617)
|+|+++|..++...|.++|++|+||++.++.||+++. +|+.++.++++. +|+||||+|.||.++ ..
T Consensus 60 TAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~-vpiiLVGtk~DLr~d~~~~~~l~~~~~~~ 138 (198)
T KOG0393|consen 60 TAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN-VPIILVGTKADLRDDPSTLEKLQRQGLEP 138 (198)
T ss_pred cCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC-CCEEEEeehHHhhhCHHHHHHHHhccCCc
Confidence 9999999999988999999999999999999999975 799999999965 899999999999743 35
Q ss_pred cCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 229 VNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 229 v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
++.+++..+++++|. .|+||||++..|++++|+..+......
T Consensus 139 Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 139 VTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred ccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcc
Confidence 778889999999995 899999999999999999988877553
No 105
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.90 E-value=7.7e-23 Score=197.86 Aligned_cols=155 Identities=21% Similarity=0.328 Sum_probs=123.4
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|..+.+. .+.||+|.++.. +. ...+.+++||+
T Consensus 16 ~~~ki~ivG~----------------------~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~--~~--~~~~~~~i~D~ 68 (181)
T PLN00223 16 KEMRILMVGL----------------------DAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VE--YKNISFTVWDV 68 (181)
T ss_pred CccEEEEECC----------------------CCCCHHHHHHHHccCCCc-cccCCcceeEEE--EE--ECCEEEEEEEC
Confidence 3468999998 999999999999987775 577898876532 32 34688999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhc-CCCCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRN-VDEPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~-~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
+|++++..++..|++++|++|+|||+++++++..+..|+..+... ....+|++||+||+|+... ...++ +.+.+
T Consensus 69 ~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~---~~~~l 143 (181)
T PLN00223 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAE---ITDKL 143 (181)
T ss_pred CCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHH---HHHHh
Confidence 999999999999999999999999999999999888777766432 2235799999999998643 23333 33333
Q ss_pred CC--------eEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 242 GG--------TYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 242 g~--------~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
++ .++++||++|+||+++|++|.+.+..
T Consensus 144 ~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 144 GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred CccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 33 35689999999999999999988754
No 106
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.90 E-value=7.3e-23 Score=201.05 Aligned_cols=149 Identities=22% Similarity=0.302 Sum_probs=128.2
Q ss_pred eEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEEC-----CeEEEEEE
Q psy3029 85 IKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG-----ENKVKLQV 159 (617)
Q Consensus 85 ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~-----~~~~~l~i 159 (617)
+||+++|+ ++||||||+++|+++.|...+.+|+|.++..+.+.+. +..+.++|
T Consensus 1 vKIvlvGd----------------------~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~I 58 (202)
T cd04102 1 VRVLVVGD----------------------SGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVEL 58 (202)
T ss_pred CEEEEECC----------------------CCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEE
Confidence 48888998 9999999999999999988999999988877777663 46789999
Q ss_pred EecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-------------------CCCCeEEEEEEC
Q psy3029 160 WDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-------------------DEPLVLCVVGNK 220 (617)
Q Consensus 160 ~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-------------------~~~iPvIlVgNK 220 (617)
|||+|+++|..++..|++++|++|+|||++++.||+.+..|+.++.... ..++|++|||||
T Consensus 59 wDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK 138 (202)
T cd04102 59 WDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTK 138 (202)
T ss_pred EecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEEC
Confidence 9999999999999999999999999999999999999999999987632 246899999999
Q ss_pred CCCCCccccCHHH----HHHHHHhcCCeEEEEcCCCCCC
Q psy3029 221 TDLESSREVNREE----AFHYSKSIGGTYYETSALQDQG 255 (617)
Q Consensus 221 ~DL~~~~~v~~~e----~~~~~~~~g~~~~evSAktg~g 255 (617)
+|+.+++.+..+. ...++++++++.+++++.....
T Consensus 139 ~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~~ 177 (202)
T cd04102 139 LDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGRL 177 (202)
T ss_pred ccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCccc
Confidence 9997766554432 3467888999999999886543
No 107
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.90 E-value=3.3e-23 Score=199.20 Aligned_cols=156 Identities=20% Similarity=0.275 Sum_probs=122.6
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|..+.+. .+.||+|.++... .. ..+.+.+|||
T Consensus 12 ~~~ki~l~G~----------------------~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~--~~--~~~~l~l~D~ 64 (175)
T smart00177 12 KEMRILMVGL----------------------DAAGKTTILYKLKLGESV-TTIPTIGFNVETV--TY--KNISFTVWDV 64 (175)
T ss_pred CccEEEEEcC----------------------CCCCHHHHHHHHhcCCCC-CcCCccccceEEE--EE--CCEEEEEEEC
Confidence 3578999998 999999999999877764 5778988776433 22 4588999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHH---
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYS--- 238 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~--- 238 (617)
+|++++..++..|++++|++|+|||++++.+++.+.+|+..+.... ...+|++||+||+|+.... ..++.....
T Consensus 65 ~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~ 142 (175)
T smart00177 65 GGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLH 142 (175)
T ss_pred CCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCcc
Confidence 9999999999999999999999999999999999988888775432 2357999999999986432 223322221
Q ss_pred --HhcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 239 --KSIGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 239 --~~~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
+...+.++++||++|.||+++|++|.+.+
T Consensus 143 ~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 143 SIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred ccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 11223577899999999999999998764
No 108
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.90 E-value=1.7e-22 Score=192.05 Aligned_cols=149 Identities=32% Similarity=0.613 Sum_probs=126.7
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|++..+...+.++.... ....+...+..+.+++||++|++++......+++.+|++++|||++++.+|
T Consensus 9 ~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 87 (171)
T cd00157 9 GAVGKTCLLISYTTGKFPTEYVPTVFDN-YSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSF 87 (171)
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHH
Confidence 9999999999999998877777776544 455567788889999999999999988888889999999999999999999
Q ss_pred HHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCcc-----------ccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHH
Q psy3029 195 AAIK-TWVKELKRNVDEPLVLCVVGNKTDLESSR-----------EVNREEAFHYSKSIGG-TYYETSALQDQGIEDVFL 261 (617)
Q Consensus 195 ~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~~-----------~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~ 261 (617)
..+. .|+..+..... .+|+++|+||+|+.... .+..+++..++..+++ +++++||++|.|++++++
T Consensus 88 ~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 166 (171)
T cd00157 88 ENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFE 166 (171)
T ss_pred HHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHH
Confidence 8765 58887776554 58999999999986544 2356677788888888 999999999999999999
Q ss_pred HHHH
Q psy3029 262 NVSK 265 (617)
Q Consensus 262 ~I~~ 265 (617)
+|++
T Consensus 167 ~i~~ 170 (171)
T cd00157 167 EAIR 170 (171)
T ss_pred HHhh
Confidence 9864
No 109
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.90 E-value=1e-22 Score=197.13 Aligned_cols=163 Identities=19% Similarity=0.292 Sum_probs=130.9
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEE-CCeEEEEEEEec
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINV-GENKVKLQVWDT 162 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~-~~~~~~l~i~Dt 162 (617)
.+||+++|. +|||||||+++|+.+.+.. +.||.|.++....+.+ ++..+.+.+|||
T Consensus 3 ~~kv~~vG~----------------------~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt 59 (183)
T cd04152 3 SLHIVMLGL----------------------DSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDV 59 (183)
T ss_pred ceEEEEECC----------------------CCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEEC
Confidence 468888888 9999999999999888764 4688887776665554 346789999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHH--
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSK-- 239 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~-- 239 (617)
+|++++..++..+++++|++|+|||++++.++..+..|+..+.... ..++|++||+||+|+... ...++...+..
T Consensus 60 ~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~ 137 (183)
T cd04152 60 GGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALH 137 (183)
T ss_pred CCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCcc
Confidence 9999999999999999999999999999999998888888776543 245899999999998542 33344443332
Q ss_pred h----cCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 240 S----IGGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 240 ~----~g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
. .+++++++||++|.|+++++++|++.+....
T Consensus 138 ~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~ 173 (183)
T cd04152 138 ELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRR 173 (183)
T ss_pred ccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHH
Confidence 1 1246899999999999999999999886654
No 110
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.90 E-value=3.4e-22 Score=192.35 Aligned_cols=155 Identities=27% Similarity=0.468 Sum_probs=134.1
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|++..+...+.++.+..+ ...+...+..+.+.+|||+|++++..+...++..++++++|||+++..++
T Consensus 10 ~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 88 (180)
T cd04137 10 RSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSF 88 (180)
T ss_pred CCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHH
Confidence 99999999999999988777888877654 45566777788999999999999998889999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 195 AAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 195 ~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
+.+..|+..+.+.. ...+|+++|+||+|+...+.+..++...+++.++.+++++||+++.|+++++.+|.+.+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 89 EVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKV 165 (180)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999888876643 34579999999999976666666677778888889999999999999999999999887653
No 111
>KOG4252|consensus
Probab=99.89 E-value=2.7e-24 Score=197.48 Aligned_cols=168 Identities=31% Similarity=0.517 Sum_probs=158.2
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..||++|+|. .+|||||+|+|||.+-|...|..|+|+++..+.+.+.+..+++.+|||
T Consensus 19 ~aiK~vivGn----------------------g~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdt 76 (246)
T KOG4252|consen 19 RAIKFVIVGN----------------------GSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDT 76 (246)
T ss_pred hhEEEEEECC----------------------CccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHh
Confidence 4589999999 999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
+|+++|..+...||+.+.+.+|||+-+|+.||+.+.+|...+...... +|.++|-||+||.++.++...++..+++.+.
T Consensus 77 agqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~-IPtV~vqNKIDlveds~~~~~evE~lak~l~ 155 (246)
T KOG4252|consen 77 AGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETER-IPTVFVQNKIDLVEDSQMDKGEVEGLAKKLH 155 (246)
T ss_pred ccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhcc-CCeEEeeccchhhHhhhcchHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999887654 8999999999999999999999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHHhhhc
Q psy3029 243 GTYYETSALQDQGIEDVFLNVSKGLICLSQE 273 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I~~~l~~~~~~ 273 (617)
+.++.+|++...||..+|.+|++++......
T Consensus 156 ~RlyRtSvked~NV~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 156 KRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876544
No 112
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.89 E-value=7.7e-23 Score=198.01 Aligned_cols=159 Identities=20% Similarity=0.282 Sum_probs=123.6
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
.++||+++|+ +|||||||++++..+.+.. +.||+|.++.. +.. ..+.+.+|||
T Consensus 16 ~~~kv~lvG~----------------------~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~--~~~--~~~~~~l~D~ 68 (182)
T PTZ00133 16 KEVRILMVGL----------------------DAAGKTTILYKLKLGEVVT-TIPTIGFNVET--VEY--KNLKFTMWDV 68 (182)
T ss_pred CccEEEEEcC----------------------CCCCHHHHHHHHhcCCccc-cCCccccceEE--EEE--CCEEEEEEEC
Confidence 4578999999 9999999999998887754 67888876543 322 5588999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhc-CCCCCeEEEEEECCCCCCccccCHHHHHHHH---
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRN-VDEPLVLCVVGNKTDLESSREVNREEAFHYS--- 238 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~-~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~--- 238 (617)
+|++++..++..+++++|++|+|||++++.+|..+.+|+..+... ....+|++||+||.|+... +..++.....
T Consensus 69 ~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~ 146 (182)
T PTZ00133 69 GGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLH 146 (182)
T ss_pred CCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCC
Confidence 999999999999999999999999999999999988777766432 1234799999999998542 2223222211
Q ss_pred --HhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 239 --KSIGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 239 --~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
....+.++++||++|.|++++|++|.+.+..+
T Consensus 147 ~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 147 SVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred cccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHh
Confidence 11123567999999999999999999877654
No 113
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.89 E-value=2.9e-22 Score=190.58 Aligned_cols=151 Identities=23% Similarity=0.374 Sum_probs=118.4
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|..+.+...+.++. .. ......+.+..+.+.+|||+|.+++...+..++..+|++++|||++++.+|
T Consensus 9 ~~vGKTsl~~~l~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~ 86 (166)
T cd01893 9 EGVGKSSLIMSLVSEEFPENVPRVL-PE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTL 86 (166)
T ss_pred CCCCHHHHHHHHHhCcCCccCCCcc-cc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHH
Confidence 9999999999999998866544332 22 234445667789999999999998888788888999999999999999999
Q ss_pred HHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCccccC--HHHHHHHHHhcC--CeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 195 AAIK-TWVKELKRNVDEPLVLCVVGNKTDLESSREVN--REEAFHYSKSIG--GTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 195 ~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~--~~e~~~~~~~~g--~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
+.+. .|+..+..... .+|++||+||+|+.+..... .++...++..+. .+++++||++|.|++++|+.+.+.+.
T Consensus 87 ~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~ 164 (166)
T cd01893 87 ERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVL 164 (166)
T ss_pred HHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhc
Confidence 9985 68888876654 58999999999997654321 233333333332 38999999999999999999887663
No 114
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.89 E-value=5.4e-22 Score=197.07 Aligned_cols=164 Identities=29% Similarity=0.532 Sum_probs=143.1
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
....+||+++|+ +|||||||+++++.+.+...+.+|++.++....+..+++.+.+.+|
T Consensus 6 ~~~~~kv~liG~----------------------~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~ 63 (215)
T PTZ00132 6 EVPEFKLILVGD----------------------GGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVW 63 (215)
T ss_pred CCCCceEEEECC----------------------CCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEE
Confidence 344578888888 9999999999999888888999999999888888888889999999
Q ss_pred ecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHh
Q psy3029 161 DTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKS 240 (617)
Q Consensus 161 Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~ 240 (617)
||+|++++..++..++.+++++|+|||+++..+|..+..|+..+.... ..+|+++|+||+|+.. +.+..+ ...+++.
T Consensus 64 Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~-~~~~~~-~~~~~~~ 140 (215)
T PTZ00132 64 DTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD-RQVKAR-QITFHRK 140 (215)
T ss_pred ECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc-ccCCHH-HHHHHHH
Confidence 999999999999999999999999999999999999999999987765 4589999999999854 333333 3467777
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 241 IGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 241 ~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
.++.++++||++|.|++++|.+|++.+..
T Consensus 141 ~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 141 KNLQYYDISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 88899999999999999999999988764
No 115
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.89 E-value=2.8e-22 Score=192.02 Aligned_cols=154 Identities=24% Similarity=0.321 Sum_probs=123.0
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|.+..+ ..+.+|+|..+.. +.++ .+.+.+|||
T Consensus 13 ~~~kv~ivG~----------------------~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~~--~~~~--~~~l~l~D~ 65 (173)
T cd04154 13 REMRILILGL----------------------DNAGKTTILKKLLGEDI-DTISPTLGFQIKT--LEYE--GYKLNIWDV 65 (173)
T ss_pred CccEEEEECC----------------------CCCCHHHHHHHHccCCC-CCcCCccccceEE--EEEC--CEEEEEEEC
Confidence 4468888888 99999999999998754 5677888855433 3343 478999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhc-CCCCCeEEEEEECCCCCCccccCHHHHHHHHH--
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRN-VDEPLVLCVVGNKTDLESSREVNREEAFHYSK-- 239 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~-~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~-- 239 (617)
+|++.+..++..+++++|++++|||++++.+|..+..|+..+... ...++|++||+||+|+.... ..+++..++.
T Consensus 66 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~ 143 (173)
T cd04154 66 GGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELD 143 (173)
T ss_pred CCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCcc
Confidence 999998888999999999999999999999999988888877543 22458999999999986532 3444544442
Q ss_pred ---hcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy3029 240 ---SIGGTYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 240 ---~~g~~~~evSAktg~gI~eLf~~I~~ 265 (617)
..+++++++||++|.|++++|++|+.
T Consensus 144 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 144 KISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred ccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 23568999999999999999999864
No 116
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.88 E-value=1.9e-22 Score=189.91 Aligned_cols=147 Identities=18% Similarity=0.263 Sum_probs=114.6
Q ss_pred CCCCCCHHHHHHHHHcCC-CCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCCh
Q psy3029 113 FWLGVGKTSMVVRYIGKM-FSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQY 191 (617)
Q Consensus 113 G~~nVGKSSLinrl~~~~-~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~ 191 (617)
|.+|||||||+++|++.. +...+.||+|..+... ....+.+.+|||+|++++..++..+++++|++|+|+|++++
T Consensus 6 G~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~ 81 (162)
T cd04157 6 GLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDR 81 (162)
T ss_pred CCCCCCHHHHHHHHcccCCCcceecCccccceEEE----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcH
Confidence 339999999999999875 3567889988664332 23467899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcC---CCCCeEEEEEECCCCCCccccCHHHHHHHHH-----hcCCeEEEEcCCCCCCHHHHHHHH
Q psy3029 192 HSFAAIKTWVKELKRNV---DEPLVLCVVGNKTDLESSREVNREEAFHYSK-----SIGGTYYETSALQDQGIEDVFLNV 263 (617)
Q Consensus 192 ~S~~~l~~~l~~i~~~~---~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~-----~~g~~~~evSAktg~gI~eLf~~I 263 (617)
.++..+..|+..+.+.. ..++|++||+||+|+..... .++...... ...+.++++||++|.|++++|++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l 159 (162)
T cd04157 82 LRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWL 159 (162)
T ss_pred HHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHH
Confidence 99988888888775532 24689999999999865321 222222211 122368999999999999999998
Q ss_pred HH
Q psy3029 264 SK 265 (617)
Q Consensus 264 ~~ 265 (617)
.+
T Consensus 160 ~~ 161 (162)
T cd04157 160 QA 161 (162)
T ss_pred hc
Confidence 64
No 117
>PTZ00099 rab6; Provisional
Probab=99.88 E-value=1.4e-21 Score=188.07 Aligned_cols=142 Identities=36% Similarity=0.644 Sum_probs=129.3
Q ss_pred CCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC
Q psy3029 129 KMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV 208 (617)
Q Consensus 129 ~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~ 208 (617)
+.|...+.||+|.++..+.+.+++..+.+.||||+|++++..++..|++++|++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45677899999999988888999999999999999999999999999999999999999999999999999999987765
Q ss_pred CCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 209 DEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 209 ~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
...+|++||+||+||...+.+..+++..++..+++.|+++||++|.||+++|++|++.+.+.
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 55689999999999977677888888899998999999999999999999999999888653
No 118
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=7.8e-22 Score=216.13 Aligned_cols=212 Identities=21% Similarity=0.208 Sum_probs=145.7
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCc--------ccccccchhhhccCCEEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQ--------ERFRSMAPMYYRNANAALLVF 186 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~--------e~~~~~~~~~~~~ad~iIlV~ 186 (617)
+|||||||+|+|++.+ .+.+.+.+|.++......+......+.+|||||. +.+..+...+++++|++|+|+
T Consensus 8 ~nvGKStL~n~l~~~~-~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vv 86 (429)
T TIGR03594 8 PNVGKSTLFNRLTGKR-DAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVV 86 (429)
T ss_pred CCCCHHHHHHHHhCCC-cceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEE
Confidence 9999999999999876 3344455566554444333333456999999996 334455667888999999999
Q ss_pred eCCChhhHHH--HHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHH
Q psy3029 187 DITQYHSFAA--IKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNV 263 (617)
Q Consensus 187 Dis~~~S~~~--l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I 263 (617)
|..++.+..+ +.+|+.. ..+|+++|+||+|+...... ..++ ..+++ +++++||++|.|++++++.+
T Consensus 87 D~~~~~~~~d~~i~~~l~~------~~~piilVvNK~D~~~~~~~----~~~~-~~lg~~~~~~vSa~~g~gv~~ll~~i 155 (429)
T TIGR03594 87 DGREGLTPEDEEIAKWLRK------SGKPVILVANKIDGKKEDAV----AAEF-YSLGFGEPIPISAEHGRGIGDLLDAI 155 (429)
T ss_pred eCCCCCCHHHHHHHHHHHH------hCCCEEEEEECccCCccccc----HHHH-HhcCCCCeEEEeCCcCCChHHHHHHH
Confidence 9987654332 3344432 23699999999998653321 2223 35666 79999999999999999998
Q ss_pred HHHHHHhhhcccccccccccccCCccCCCCCCcccccCCCCCCCCCCchhhhheeeeccCCCCCCCcceeeeeeeccccc
Q psy3029 264 SKGLICLSQESLHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLTEAETAKFVVGLSINSRVPNCFEANWFWLGVGK 343 (617)
Q Consensus 264 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ss~~~~~~~~~~~~v~ivG~~~~s~~~~~~~~~~g~~~vGK 343 (617)
...+...... ........+++++|++ ++||
T Consensus 156 ~~~l~~~~~~----------------------------------~~~~~~~~~v~ivG~~----------------~~GK 185 (429)
T TIGR03594 156 LELLPEEEEE----------------------------------EEEEDGPIKIAIIGRP----------------NVGK 185 (429)
T ss_pred HHhcCccccc----------------------------------ccccCCceEEEEECCC----------------CCCH
Confidence 7765221000 0000123578888888 9999
Q ss_pred ccceeccccCcc-cCccCCccceeeEEEEEEECCEEEEEEeecCCC
Q psy3029 344 TSMVVRYIGKMF-SHHISPTIGASFFTAKINVGENKVKLQLRTGLK 388 (617)
Q Consensus 344 ssi~~~~~~~~f-~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~ 388 (617)
|+++++++.... .....+++..+.....+..+++.+.|--++|+.
T Consensus 186 SsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~ 231 (429)
T TIGR03594 186 STLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIR 231 (429)
T ss_pred HHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCcc
Confidence 999999997653 233345566677677888888888777676664
No 119
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=1.4e-21 Score=214.61 Aligned_cols=210 Identities=20% Similarity=0.212 Sum_probs=143.7
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCccee--EEEEEEEECCeEEEEEEEecCCccc--------ccccchhhhccCCEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGAS--FFTAKINVGENKVKLQVWDTAGQER--------FRSMAPMYYRNANAALL 184 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~--~~~~~i~~~~~~~~l~i~Dt~G~e~--------~~~~~~~~~~~ad~iIl 184 (617)
+|||||||+|+|++.+. ..+...+|.+ +....+.+++ ..+.+|||+|.+. +......++..+|++|+
T Consensus 10 ~~vGKStL~n~l~~~~~-~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~ 86 (435)
T PRK00093 10 PNVGKSTLFNRLTGKRD-AIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILF 86 (435)
T ss_pred CCCCHHHHHHHHhCCCc-eeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEE
Confidence 99999999999998763 2233344443 3333444444 7899999999876 23334567889999999
Q ss_pred EEeCCChhhHH--HHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHH
Q psy3029 185 VFDITQYHSFA--AIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG-TYYETSALQDQGIEDVFL 261 (617)
Q Consensus 185 V~Dis~~~S~~--~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~ 261 (617)
|+|++++.+.. .+.+|+... ++|+++|+||+|+... .+...++ ..+++ .++++||++|.|++++++
T Consensus 87 vvd~~~~~~~~~~~~~~~l~~~------~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~ 155 (435)
T PRK00093 87 VVDGRAGLTPADEEIAKILRKS------NKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGRGIGDLLD 155 (435)
T ss_pred EEECCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHH
Confidence 99998864432 234454432 4799999999997431 1222333 34566 489999999999999999
Q ss_pred HHHHHHHHhhhcccccccccccccCCccCCCCCCcccccCCCCCCCCCCchhhhheeeeccCCCCCCCcceeeeeeeccc
Q psy3029 262 NVSKGLICLSQESLHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLTEAETAKFVVGLSINSRVPNCFEANWFWLGV 341 (617)
Q Consensus 262 ~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ss~~~~~~~~~~~~v~ivG~~~~s~~~~~~~~~~g~~~v 341 (617)
.|........ . . .. ....++++++|++ ++
T Consensus 156 ~I~~~~~~~~---~---------------~---------------~~--~~~~~~v~ivG~~----------------n~ 184 (435)
T PRK00093 156 AILEELPEEE---E---------------E---------------DE--EDEPIKIAIIGRP----------------NV 184 (435)
T ss_pred HHHhhCCccc---c---------------c---------------cc--cccceEEEEECCC----------------CC
Confidence 9876221000 0 0 00 1124778888888 99
Q ss_pred ccccceeccccCc-ccCccCCccceeeEEEEEEECCEEEEEEeecCCCc
Q psy3029 342 GKTSMVVRYIGKM-FSHHISPTIGASFFTAKINVGENKVKLQLRTGLKV 389 (617)
Q Consensus 342 GKssi~~~~~~~~-f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~~ 389 (617)
|||+++++++... ......+++..+.....+..++..+.|--++|+..
T Consensus 185 GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~ 233 (435)
T PRK00093 185 GKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRR 233 (435)
T ss_pred CHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCC
Confidence 9999999999654 34445566667777777888888888877777643
No 120
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=1.6e-21 Score=225.50 Aligned_cols=217 Identities=20% Similarity=0.222 Sum_probs=148.7
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccc--------ccccchhhhccCCEEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQER--------FRSMAPMYYRNANAALLVF 186 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~--------~~~~~~~~~~~ad~iIlV~ 186 (617)
+|||||||+|+|++.+. +.+.+++|+++.............+.+|||+|.+. +......++..+|++|+|+
T Consensus 284 ~nvGKSSL~n~l~~~~~-~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~Vv 362 (712)
T PRK09518 284 PNVGKSTLVNRILGRRE-AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVV 362 (712)
T ss_pred CCCCHHHHHHHHhCCCc-eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEE
Confidence 99999999999998763 44556777776665544433346789999999763 2334456788999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHH
Q psy3029 187 DITQYHSFAAIK-TWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVS 264 (617)
Q Consensus 187 Dis~~~S~~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~ 264 (617)
|+++... ..+ .|+..+.. .++|+++|+||+|+.... .....+. .++. ..+++||++|.||++++++|+
T Consensus 363 Da~~~~~--~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g~GI~eLl~~i~ 432 (712)
T PRK09518 363 DGQVGLT--STDERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHGRGVGDLLDEAL 432 (712)
T ss_pred ECCCCCC--HHHHHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCCCCchHHHHHHH
Confidence 9986432 222 34444443 347999999999985421 1222222 2333 467899999999999999998
Q ss_pred HHHHHhhhcccccccccccccCCccCCCCCCcccccCCCCCCCCCCchhhhheeeeccCCCCCCCcceeeeeeecccccc
Q psy3029 265 KGLICLSQESLHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLTEAETAKFVVGLSINSRVPNCFEANWFWLGVGKT 344 (617)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ss~~~~~~~~~~~~v~ivG~~~~s~~~~~~~~~~g~~~vGKs 344 (617)
+.+...... . .. ..+ ....+++++|+| ++|||
T Consensus 433 ~~l~~~~~~-------------------~-~a--~~~----------~~~~kI~ivG~~----------------nvGKS 464 (712)
T PRK09518 433 DSLKVAEKT-------------------S-GF--LTP----------SGLRRVALVGRP----------------NVGKS 464 (712)
T ss_pred Hhccccccc-------------------c-cc--cCC----------CCCcEEEEECCC----------------CCCHH
Confidence 866321000 0 00 000 012578888888 99999
Q ss_pred cceeccccCccc-CccCCccceeeEEEEEEECCEEEEEEeecCCCce
Q psy3029 345 SMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQLRTGLKVS 390 (617)
Q Consensus 345 si~~~~~~~~f~-~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~~~ 390 (617)
|++++++...+. ....|+++.++....+.+++..+.|--++|+..+
T Consensus 465 SLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~ 511 (712)
T PRK09518 465 SLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRR 511 (712)
T ss_pred HHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccC
Confidence 999999987642 2234555677878888999998888777887543
No 121
>PLN00023 GTP-binding protein; Provisional
Probab=99.87 E-value=1.8e-21 Score=200.66 Aligned_cols=139 Identities=24% Similarity=0.453 Sum_probs=121.7
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECC----------
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE---------- 152 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~---------- 152 (617)
..+||+|+|+ .|||||||+++|+++.|...+.+|+|.++..+.+.+++
T Consensus 20 ~~iKIVLLGd----------------------sGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~ 77 (334)
T PLN00023 20 GQVRVLVVGD----------------------SGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKG 77 (334)
T ss_pred cceEEEEECC----------------------CCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccc
Confidence 4479999999 99999999999999999888999999998777776642
Q ss_pred ---eEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC------------CCCeEEEE
Q psy3029 153 ---NKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD------------EPLVLCVV 217 (617)
Q Consensus 153 ---~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~------------~~iPvIlV 217 (617)
..+.++||||+|+++|..++..|+++++++|+|||++++.+|+.+.+|+..+..... .++|++||
T Consensus 78 d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILV 157 (334)
T PLN00023 78 DSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVI 157 (334)
T ss_pred cCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEE
Confidence 468899999999999999999999999999999999999999999999999987531 25899999
Q ss_pred EECCCCCCcc---c---cCHHHHHHHHHhcCC
Q psy3029 218 GNKTDLESSR---E---VNREEAFHYSKSIGG 243 (617)
Q Consensus 218 gNK~DL~~~~---~---v~~~e~~~~~~~~g~ 243 (617)
|||+||..++ . +..+++++||+++++
T Consensus 158 GNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 158 GNKADIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred EECccccccccccccccccHHHHHHHHHHcCC
Confidence 9999996543 2 357889999999875
No 122
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.87 E-value=3e-21 Score=185.28 Aligned_cols=144 Identities=26% Similarity=0.367 Sum_probs=113.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+.+.+.. +.+|+|.++.. +.+ ..+.+.+||++|++++...+..+++++|++|+|||++++.++
T Consensus 24 ~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~ 98 (174)
T cd04153 24 DNAGKTTILYQFLLGEVVH-TSPTIGSNVEE--IVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERL 98 (174)
T ss_pred CCCCHHHHHHHHccCCCCC-cCCccccceEE--EEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHH
Confidence 9999999999999888764 67888876543 223 357899999999999998999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHH-HHH----HhcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAF-HYS----KSIGGTYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 195 ~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~-~~~----~~~g~~~~evSAktg~gI~eLf~~I~~ 265 (617)
..+..|+..+.+.. ...+|++||+||+|+... ...++.. .+. ...+++++++||++|.||+++|++|.+
T Consensus 99 ~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 99 PLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred HHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 88888777765432 235799999999998642 2233322 221 234457999999999999999999864
No 123
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.87 E-value=1.7e-21 Score=183.34 Aligned_cols=147 Identities=20% Similarity=0.329 Sum_probs=114.1
Q ss_pred CCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChh
Q psy3029 113 FWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYH 192 (617)
Q Consensus 113 G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~ 192 (617)
|.+|||||||+++|.++.+. .+.||++.++.. +.+ ...+.+.+||++|++++..++..++.++|++|+|+|++++.
T Consensus 6 G~~~~GKTsl~~~~~~~~~~-~~~~t~~~~~~~--~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~ 81 (160)
T cd04156 6 GLDSAGKSTLLYKLKHAELV-TTIPTVGFNVEM--LQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEA 81 (160)
T ss_pred cCCCCCHHHHHHHHhcCCcc-cccCccCcceEE--EEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHH
Confidence 33999999999999998875 456888765433 333 34578999999999999888999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHH------HHhcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy3029 193 SFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHY------SKSIGGTYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 193 S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~------~~~~g~~~~evSAktg~gI~eLf~~I~~ 265 (617)
++..+..|+..+.+.. ..++|++||+||+|+... ...++.... +...+++++++||++|+||+++|++|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 82 RLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 9999988888875532 245899999999998532 122222222 2223457999999999999999999854
No 124
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.87 E-value=1.2e-21 Score=186.76 Aligned_cols=146 Identities=20% Similarity=0.273 Sum_probs=116.1
Q ss_pred CCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChh
Q psy3029 113 FWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYH 192 (617)
Q Consensus 113 G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~ 192 (617)
|.+|||||||+++|.+. +...+.||+|.... .+.. ..+.+++||++|++++..++..|++++|++|+|||++++.
T Consensus 6 G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 6 GLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT--KLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CCCCCCHHHHHHHHhCC-CCccccCcccceEE--EEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 33999999999999977 67788899987533 3333 4578999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHH------HHHHHhcC--CeEEEEcCCCC------CCHH
Q psy3029 193 SFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEA------FHYSKSIG--GTYYETSALQD------QGIE 257 (617)
Q Consensus 193 S~~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~------~~~~~~~g--~~~~evSAktg------~gI~ 257 (617)
+|..+..|+..+..... ..+|++||+||+|+...+. ..+. ..++++.+ +.+++|||++| .|++
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~ 158 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIV 158 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHH
Confidence 99999999998876432 4579999999999965432 1111 22332233 46888999998 8999
Q ss_pred HHHHHHHH
Q psy3029 258 DVFLNVSK 265 (617)
Q Consensus 258 eLf~~I~~ 265 (617)
+.|+||..
T Consensus 159 ~~~~wl~~ 166 (167)
T cd04161 159 EGLRWLLA 166 (167)
T ss_pred HHHHHHhc
Confidence 99999864
No 125
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.86 E-value=1.7e-21 Score=183.52 Aligned_cols=144 Identities=26% Similarity=0.333 Sum_probs=109.6
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|..+.+. .+.+|++.++.. +. ...+.+++|||+|++++..+++.+++.+|++|+|+|++++.++
T Consensus 8 ~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~--~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~ 82 (158)
T cd04151 8 DNAGKTTILYRLQLGEVV-TTIPTIGFNVET--VT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRL 82 (158)
T ss_pred CCCCHHHHHHHHccCCCc-CcCCccCcCeEE--EE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHH
Confidence 999999999999887764 456888776543 22 2457899999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHh-cCCCCCeEEEEEECCCCCCccccCHHHHHHHH-----HhcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKR-NVDEPLVLCVVGNKTDLESSREVNREEAFHYS-----KSIGGTYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 195 ~~l~~~l~~i~~-~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~-----~~~g~~~~evSAktg~gI~eLf~~I~~ 265 (617)
....+|+..+.+ ....++|++||+||+|+.... ...+..... ...+++++++||++|.|++++|++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 83 GTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 777666655433 222357999999999986432 122222111 112347999999999999999999864
No 126
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.86 E-value=4.9e-21 Score=186.01 Aligned_cols=154 Identities=20% Similarity=0.292 Sum_probs=123.6
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
+.||+++|+ +|||||||+++|.++.+ ..+.+|.+.... .+.++ .+.+.+||++
T Consensus 19 ~~ki~ilG~----------------------~~~GKStLi~~l~~~~~-~~~~~T~~~~~~--~i~~~--~~~~~l~D~~ 71 (190)
T cd00879 19 EAKILFLGL----------------------DNAGKTTLLHMLKDDRL-AQHVPTLHPTSE--ELTIG--NIKFKTFDLG 71 (190)
T ss_pred CCEEEEECC----------------------CCCCHHHHHHHHhcCCC-cccCCccCcceE--EEEEC--CEEEEEEECC
Confidence 468889998 99999999999998876 467778776543 34444 3678999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHHHHHHHh--
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKS-- 240 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~-- 240 (617)
|++++..++..+++.+|++++|+|+++..+|.....|+..+.+... .+.|++||+||+|+.. .+..++...+...
T Consensus 72 G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~ 149 (190)
T cd00879 72 GHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYG 149 (190)
T ss_pred CCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCccc
Confidence 9999888889999999999999999999999888888888765432 4579999999999853 3455566555532
Q ss_pred --------------cCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 241 --------------IGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 241 --------------~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
..+.+++|||++|+|++++|++|.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 150 TTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 22468999999999999999999764
No 127
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.86 E-value=3.6e-21 Score=180.94 Aligned_cols=144 Identities=23% Similarity=0.304 Sum_probs=115.3
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||++++++.. ...+.++.+.++.... + ..+.+.+||++|++.+..++..+++.+|++++|||++++.++
T Consensus 8 ~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~--~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~ 82 (158)
T cd00878 8 DGAGKTTILYKLKLGE-VVTTIPTIGFNVETVE--Y--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERI 82 (158)
T ss_pred CCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEE--E--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHH
Confidence 9999999999999887 4567788887654433 2 357899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHH-----hcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSK-----SIGGTYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 195 ~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~-----~~g~~~~evSAktg~gI~eLf~~I~~ 265 (617)
..+..|+..+.... ....|+++|+||+|+.... ..++...... ...++++++||++|.|++++|++|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 83 EEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99988888776643 2457999999999986543 2223333322 23458999999999999999999864
No 128
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.86 E-value=9.9e-21 Score=179.46 Aligned_cols=145 Identities=28% Similarity=0.390 Sum_probs=113.4
Q ss_pred CCCCHHHHHHHHHcCCC------CCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeC
Q psy3029 115 LGVGKTSMVVRYIGKMF------SHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDI 188 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~------~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Di 188 (617)
+|||||||+++|++... ...+.+|++.++... .++ ...+.+|||+|++.+..++..+++.+|++++|+|+
T Consensus 8 ~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~--~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~ 83 (167)
T cd04160 8 DNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTI--EVG--NARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDS 83 (167)
T ss_pred CCCCHHHHHHHHhhhcccccCCcccccCCccccceEEE--EEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEEC
Confidence 99999999999976421 335567777765433 333 57899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHh-------cCCeEEEEcCCCCCCHHHHH
Q psy3029 189 TQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKS-------IGGTYYETSALQDQGIEDVF 260 (617)
Q Consensus 189 s~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~-------~g~~~~evSAktg~gI~eLf 260 (617)
+++.++..+..|+..+.+.. ..++|++||+||+|+... ...++...+... .+++++++||++|.|+++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~ 161 (167)
T cd04160 84 TDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGI 161 (167)
T ss_pred chHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHH
Confidence 99888988888888776542 245899999999998643 334444444432 23589999999999999999
Q ss_pred HHHHH
Q psy3029 261 LNVSK 265 (617)
Q Consensus 261 ~~I~~ 265 (617)
++|.+
T Consensus 162 ~~l~~ 166 (167)
T cd04160 162 EWLVE 166 (167)
T ss_pred HHHhc
Confidence 99864
No 129
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.84 E-value=4e-20 Score=179.28 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=121.3
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...++|+++|. +|||||||+++|.++.+. .+.||.+.+... +.+ ..+.+.+||
T Consensus 15 ~~~~~i~ivG~----------------------~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~~~D 67 (184)
T smart00178 15 NKHAKILFLGL----------------------DNAGKTTLLHMLKNDRLA-QHQPTQHPTSEE--LAI--GNIKFTTFD 67 (184)
T ss_pred cccCEEEEECC----------------------CCCCHHHHHHHHhcCCCc-ccCCccccceEE--EEE--CCEEEEEEE
Confidence 34578999998 999999999999988754 456777665433 223 347899999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHh
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKS 240 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~ 240 (617)
++|++++..++..++.++|++|+|+|++++.++.....|+..+.+.. ..++|++||+||+|+.. .+..+++.+....
T Consensus 68 ~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l 145 (184)
T smart00178 68 LGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGL 145 (184)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCC
Confidence 99999998899999999999999999999999988888877765432 23579999999999853 3444544433211
Q ss_pred ------------cCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 241 ------------IGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 241 ------------~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
....+++|||++|.|+++++++|.++
T Consensus 146 ~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 146 TNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 12368999999999999999999764
No 130
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.84 E-value=5.1e-20 Score=176.72 Aligned_cols=147 Identities=20% Similarity=0.240 Sum_probs=110.2
Q ss_pred CCCCHHHHHHHHHcCC-------CCCccCC------CcceeEEEEEEEE-----CCeEEEEEEEecCCcccccccchhhh
Q psy3029 115 LGVGKTSMVVRYIGKM-------FSHHISP------TIGASFFTAKINV-----GENKVKLQVWDTAGQERFRSMAPMYY 176 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~-------~~~~~~~------t~g~~~~~~~i~~-----~~~~~~l~i~Dt~G~e~~~~~~~~~~ 176 (617)
++||||||+++|++.. +...+.+ +.|.++....+.+ ++..+.+.||||+|++++..++..++
T Consensus 9 ~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 88 (179)
T cd01890 9 IDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSYEVSRSL 88 (179)
T ss_pred cCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhHHHHHHHH
Confidence 9999999999998632 2223333 3355555444333 56778999999999999999999999
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC---eEEEEcCCCC
Q psy3029 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG---TYYETSALQD 253 (617)
Q Consensus 177 ~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~---~~~evSAktg 253 (617)
+.+|++|+|||+++..++..+..|.... . .++|+++|+||+|+.... ..+...++++.+++ .++++||++|
T Consensus 89 ~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~---~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g 162 (179)
T cd01890 89 AACEGALLLVDATQGVEAQTLANFYLAL-E---NNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAILVSAKTG 162 (179)
T ss_pred HhcCeEEEEEECCCCccHhhHHHHHHHH-H---cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEEEeeccCC
Confidence 9999999999999877777666664332 2 347999999999986432 12223456666666 4899999999
Q ss_pred CCHHHHHHHHHHHH
Q psy3029 254 QGIEDVFLNVSKGL 267 (617)
Q Consensus 254 ~gI~eLf~~I~~~l 267 (617)
.|++++|++|.+.+
T Consensus 163 ~gi~~l~~~l~~~~ 176 (179)
T cd01890 163 LGVEDLLEAIVERI 176 (179)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998754
No 131
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.84 E-value=3.2e-20 Score=172.91 Aligned_cols=148 Identities=30% Similarity=0.381 Sum_probs=116.4
Q ss_pred CCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCCh
Q psy3029 112 WFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQY 191 (617)
Q Consensus 112 ~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~ 191 (617)
+|++|||||||+++|.+..+...+.++.+.++.. +.. ..+.+.+||++|++++..++..++..+|++++|+|++++
T Consensus 5 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 80 (159)
T cd04159 5 VGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTK--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADR 80 (159)
T ss_pred EcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCH
Confidence 3339999999999999999988899999877643 333 237899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHH-----HhcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy3029 192 HSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYS-----KSIGGTYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 192 ~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~-----~~~g~~~~evSAktg~gI~eLf~~I~~ 265 (617)
.++..+..|+..+.... ...+|+++|+||+|+..... .++..... ....++++++||++|.|+++++++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 81 TALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 88888877777765432 24579999999999865432 22222111 122357899999999999999999864
No 132
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.82 E-value=3.1e-19 Score=171.71 Aligned_cols=157 Identities=25% Similarity=0.377 Sum_probs=125.1
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...++|+++|. .|+|||||++++..+.+ ..+.||.|.+.... .+ ..+.+.+||
T Consensus 12 ~~~~~ililGl----------------------~~sGKTtll~~l~~~~~-~~~~pT~g~~~~~i--~~--~~~~~~~~d 64 (175)
T PF00025_consen 12 KKEIKILILGL----------------------DGSGKTTLLNRLKNGEI-SETIPTIGFNIEEI--KY--KGYSLTIWD 64 (175)
T ss_dssp TSEEEEEEEES----------------------TTSSHHHHHHHHHSSSE-EEEEEESSEEEEEE--EE--TTEEEEEEE
T ss_pred CcEEEEEEECC----------------------CccchHHHHHHhhhccc-cccCccccccccee--ee--CcEEEEEEe
Confidence 45678999998 99999999999998764 35778988765443 33 447799999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHH-
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSK- 239 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~- 239 (617)
.+|+..+..+++.|+.++|++|||+|.++...+.+..+.+..+.... ...+|++|++||+|+... ...+++.....
T Consensus 65 ~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l 142 (175)
T PF00025_consen 65 LGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGL 142 (175)
T ss_dssp ESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTG
T ss_pred ccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhh
Confidence 99999999999999999999999999999988888887777765532 246899999999998643 34444443332
Q ss_pred -----hcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 240 -----SIGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 240 -----~~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
...+.++.|||.+|+|+.+.++||.+.+
T Consensus 143 ~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 143 EKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp GGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred hhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 2234789999999999999999998764
No 133
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.82 E-value=2.3e-19 Score=170.24 Aligned_cols=148 Identities=19% Similarity=0.117 Sum_probs=100.6
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccccccc---------chhhhccCCEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSM---------APMYYRNANAALLV 185 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~---------~~~~~~~ad~iIlV 185 (617)
+|||||||+++|++..+..... .+.+.......+....+.+.||||+|+...... .......+|++|+|
T Consensus 9 ~~~GKssli~~l~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v 86 (168)
T cd01897 9 PNVGKSSLVNKLTRAKPEVAPY--PFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFL 86 (168)
T ss_pred CCCCHHHHHHHHhcCCCccCCC--CCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEE
Confidence 9999999999999887632211 111111111122334578999999998421110 11111236899999
Q ss_pred EeCCChhhH--HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHH
Q psy3029 186 FDITQYHSF--AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNV 263 (617)
Q Consensus 186 ~Dis~~~S~--~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I 263 (617)
+|++++.++ .....|+..+.... .++|+++|+||+|+.....+.. ..++....+.+++++||++|.|+++++++|
T Consensus 87 ~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (168)
T cd01897 87 FDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEGVDEVKNKA 163 (168)
T ss_pred EeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCCHHHHHHHH
Confidence 999987653 55567888876644 3579999999999975444322 445555566789999999999999999999
Q ss_pred HHHH
Q psy3029 264 SKGL 267 (617)
Q Consensus 264 ~~~l 267 (617)
.+.+
T Consensus 164 ~~~~ 167 (168)
T cd01897 164 CELL 167 (168)
T ss_pred HHHh
Confidence 8765
No 134
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.82 E-value=7.9e-19 Score=162.47 Aligned_cols=149 Identities=29% Similarity=0.470 Sum_probs=120.0
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCCh-hh
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQY-HS 193 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~-~S 193 (617)
+|+|||||+++|....+...+.++.+.++....+..++..+.+.+||++|+.++..++..++.+++.+++++|+... .+
T Consensus 10 ~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~ 89 (161)
T TIGR00231 10 PNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLD 89 (161)
T ss_pred CCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehh
Confidence 99999999999999887777778888887776677777668999999999999988888899999999999999887 66
Q ss_pred HHHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHH
Q psy3029 194 FAAIK-TWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVS 264 (617)
Q Consensus 194 ~~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~ 264 (617)
+.... .|+..+........|+++|+||+|+.... ...+....+......+++++||+++.|+++++++|.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 90 VEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred hhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 76655 67777766554468999999999996543 223333333344456899999999999999998863
No 135
>KOG3905|consensus
Probab=99.81 E-value=4.6e-20 Score=184.37 Aligned_cols=256 Identities=16% Similarity=0.277 Sum_probs=198.2
Q ss_pred EEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECC--eEEEEEEEecC
Q psy3029 86 KVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE--NKVKLQVWDTA 163 (617)
Q Consensus 86 kV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~--~~~~l~i~Dt~ 163 (617)
.|+++|+ .++||||||.+|.+. +.+.+..|..|....++.+. ...++.+|-..
T Consensus 54 ~VlvlGd----------------------n~sGKtsLi~klqg~---e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLD 108 (473)
T KOG3905|consen 54 NVLVLGD----------------------NGSGKTSLISKLQGS---ETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILD 108 (473)
T ss_pred eEEEEcc----------------------CCCchhHHHHHhhcc---cccCCCCCcceEEEecccccchhhhhcceEEec
Confidence 7999999 999999999999874 46777778877666655433 34678899888
Q ss_pred Ccccccccchhhhcc----CCEEEEEEeCCChhh-HHHHHHHHHHHHhcCCC----------------------------
Q psy3029 164 GQERFRSMAPMYYRN----ANAALLVFDITQYHS-FAAIKTWVKELKRNVDE---------------------------- 210 (617)
Q Consensus 164 G~e~~~~~~~~~~~~----ad~iIlV~Dis~~~S-~~~l~~~l~~i~~~~~~---------------------------- 210 (617)
|......+...++.. -.++||+.|+++|+. ++.+.+|..-+.++..+
T Consensus 109 Gd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~ 188 (473)
T KOG3905|consen 109 GDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGED 188 (473)
T ss_pred CchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcccc
Confidence 887666666666543 257899999999975 67788887655432210
Q ss_pred ---------------------------------CCeEEEEEECCCCC----Cccc-------cCHHHHHHHHHhcCCeEE
Q psy3029 211 ---------------------------------PLVLCVVGNKTDLE----SSRE-------VNREEAFHYSKSIGGTYY 246 (617)
Q Consensus 211 ---------------------------------~iPvIlVgNK~DL~----~~~~-------v~~~e~~~~~~~~g~~~~ 246 (617)
.+|++||+||||+. .+.+ .....+++||..+|...|
T Consensus 189 ~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLi 268 (473)
T KOG3905|consen 189 QPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALI 268 (473)
T ss_pred CCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeE
Confidence 08999999999982 2222 123456789999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHhhhcccccccccccccCCccCCCCCCcccccCCCCCCCCCCchhhhheeeeccCCCC
Q psy3029 247 ETSALQDQGIEDVFLNVSKGLICLSQESLHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLTEAETAKFVVGLSINS 326 (617)
Q Consensus 247 evSAktg~gI~eLf~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ss~~~~~~~~~~~~v~ivG~~~~s 326 (617)
.+|+|...||+-|+.+|.+.++..... +|++..+...|+|.+
T Consensus 269 yTSvKE~KNidllyKYivhr~yG~~ft---------------------------------tpAlVVEkdaVfIPA----- 310 (473)
T KOG3905|consen 269 YTSVKETKNIDLLYKYIVHRSYGFPFT---------------------------------TPALVVEKDAVFIPA----- 310 (473)
T ss_pred EeecccccchHHHHHHHHHHhcCcccC---------------------------------CcceEeecceeEecc-----
Confidence 999999999999999999988765421 344455555677766
Q ss_pred CCCcceeeeeeecccccccceecccc-----CcccCcc-CCccceeeEEEEEEECCEEEEEEeecCCCceeeeccC-CCC
Q psy3029 327 RVPNCFEANWFWLGVGKTSMVVRYIG-----KMFSHHI-SPTIGASFFTAKINVGENKVKLQLRTGLKVSKIPVPT-RNR 399 (617)
Q Consensus 327 ~~~~~~~~~~g~~~vGKssi~~~~~~-----~~f~~~~-~pTIg~df~~k~v~~d~~~v~LqI~~~~~~~~~~~~~-r~~ 399 (617)
||++..|..|++..+. +.|.+.+ .|.+..-.+.+.|+.++.++.|+-++.++++++++++ |+.
T Consensus 311 ----------GWD~eKKI~Il~En~~~vkaed~y~d~itkpp~Rk~v~ekei~aEddQaFL~k~q~iLak~~~t~a~rp~ 380 (473)
T KOG3905|consen 311 ----------GWDNEKKIDILHENFPTVKAEDNYEDIITKPPVRKVVHEKEIEAEDDQAFLMKLQSILAKQPTTAAPRPR 380 (473)
T ss_pred ----------CCCccccchhhhhcCCCCCccccccccccCCcchhhhhhhhhhcchHHHHHHHHHHHHhcCCCCCCCCcc
Confidence 9999999999998874 3444433 4777777778999999999999999999999999999 999
Q ss_pred CCCCCCCCCCCCCCC
Q psy3029 400 EGATTGRITEPDTMN 414 (617)
Q Consensus 400 ~g~~~~~~~~~~~~~ 414 (617)
...++++.++|++..
T Consensus 381 ~sq~~~~~ksprtpg 395 (473)
T KOG3905|consen 381 TSQERGPDKSPRTPG 395 (473)
T ss_pred cccCCCCCCCCCCCC
Confidence 999999999988864
No 136
>KOG1673|consensus
Probab=99.81 E-value=8e-20 Score=164.52 Aligned_cols=165 Identities=27% Similarity=0.532 Sum_probs=146.3
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
-.+||.++|+ +.+|||||+-++.++.+.+.+..+.|+.+..+.+.+.+..+.+.|||.
T Consensus 19 Vslkv~llGD----------------------~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdl 76 (205)
T KOG1673|consen 19 VSLKVGLLGD----------------------AQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDL 76 (205)
T ss_pred eEEEEEeecc----------------------cccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEec
Confidence 3579999999 999999999999999988889999999999999999999999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCc-----cccCHHHHHHH
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESS-----REVNREEAFHY 237 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~-----~~v~~~e~~~~ 237 (617)
+|++++..+++.+.+.+-+++|+||++.+.++..+.+|+.+........+|+ +||+|.|+.-. .+-...+++.+
T Consensus 77 gG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~Y 155 (205)
T KOG1673|consen 77 GGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKY 155 (205)
T ss_pred CCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988877666775 89999997311 11112356788
Q ss_pred HHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 238 SKSIGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 238 ~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
++.++...|.||+.++.||..+|..+..++...
T Consensus 156 Ak~mnAsL~F~Sts~sINv~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 156 AKVMNASLFFCSTSHSINVQKIFKIVLAKLFNL 188 (205)
T ss_pred HHHhCCcEEEeeccccccHHHHHHHHHHHHhCC
Confidence 999999999999999999999999998887654
No 137
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.81 E-value=2.5e-19 Score=170.24 Aligned_cols=152 Identities=19% Similarity=0.148 Sum_probs=104.8
Q ss_pred CCCCCCCCHHHHHHHHHcCCCCCcc--CCCcceeEEEEEEEECCeEEEEEEEecCCcc----cccccchhhhc---cCCE
Q psy3029 111 NWFWLGVGKTSMVVRYIGKMFSHHI--SPTIGASFFTAKINVGENKVKLQVWDTAGQE----RFRSMAPMYYR---NANA 181 (617)
Q Consensus 111 i~G~~nVGKSSLinrl~~~~~~~~~--~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e----~~~~~~~~~~~---~ad~ 181 (617)
|+|.+|||||||+++|.+....... ..|....+ ..+...+ ...+.+|||||+. .+..+...+++ .+|+
T Consensus 5 ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~--~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 5 LVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNL--GVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred EECCCCCCHHHHHHHHhcCCccccCCCccccCCcc--eEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 3333999999999999976532111 11211111 1122222 2479999999973 22234444444 5999
Q ss_pred EEEEEeCCCh-hhHHHHHHHHHHHHhcCC--CCCeEEEEEECCCCCCccccCHHHHHHHHHh-cCCeEEEEcCCCCCCHH
Q psy3029 182 ALLVFDITQY-HSFAAIKTWVKELKRNVD--EPLVLCVVGNKTDLESSREVNREEAFHYSKS-IGGTYYETSALQDQGIE 257 (617)
Q Consensus 182 iIlV~Dis~~-~S~~~l~~~l~~i~~~~~--~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~-~g~~~~evSAktg~gI~ 257 (617)
+++|+|++++ .+++.+..|+..+..... ..+|+++|+||+|+...... .+....+... .+.+++++||+++.|++
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 160 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGLD 160 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCHH
Confidence 9999999999 789999999888876542 35799999999998654443 2334445555 36789999999999999
Q ss_pred HHHHHHHHH
Q psy3029 258 DVFLNVSKG 266 (617)
Q Consensus 258 eLf~~I~~~ 266 (617)
++|++|.+.
T Consensus 161 ~l~~~i~~~ 169 (170)
T cd01898 161 ELLRKLAEL 169 (170)
T ss_pred HHHHHHHhh
Confidence 999998764
No 138
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.81 E-value=9e-20 Score=168.51 Aligned_cols=127 Identities=20% Similarity=0.247 Sum_probs=94.9
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcc-----cccccchhhhccCCEEEEEEeCC
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQE-----RFRSMAPMYYRNANAALLVFDIT 189 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e-----~~~~~~~~~~~~ad~iIlV~Dis 189 (617)
+|||||||+++|++..+ .+.+|.+.++. -.+|||+|+. .+..+. .+++++|++|+|||++
T Consensus 9 ~~vGKSsL~~~l~~~~~--~~~~t~~~~~~------------~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~d~~ 73 (142)
T TIGR02528 9 VGCGKTTLTQALQGEEI--LYKKTQAVEYN------------DGAIDTPGEYVENRRLYSALI-VTAADADVIALVQSAT 73 (142)
T ss_pred CCCCHHHHHHHHcCCcc--ccccceeEEEc------------CeeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEecCC
Confidence 99999999999998765 34455443321 1689999972 233333 3578999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHH
Q psy3029 190 QYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVS 264 (617)
Q Consensus 190 ~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~ 264 (617)
++.++.. ..|+..+ . .|+++|+||+|+.+ +....++..++++..+. +++++||++|.|++++|++|.
T Consensus 74 ~~~s~~~-~~~~~~~----~--~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 74 DPESRFP-PGFASIF----V--KPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred CCCcCCC-hhHHHhc----c--CCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 9988754 3454322 1 38999999999864 33455666777877776 899999999999999998874
No 139
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.81 E-value=6.1e-19 Score=168.27 Aligned_cols=150 Identities=23% Similarity=0.328 Sum_probs=115.9
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
.++|+++|. +|||||||+++|.+..+ ..+.++.|.++. .+... ...+.+||++
T Consensus 14 ~~~v~i~G~----------------------~g~GKStLl~~l~~~~~-~~~~~t~g~~~~--~i~~~--~~~~~~~D~~ 66 (173)
T cd04155 14 EPRILILGL----------------------DNAGKTTILKQLASEDI-SHITPTQGFNIK--TVQSD--GFKLNVWDIG 66 (173)
T ss_pred ccEEEEEcc----------------------CCCCHHHHHHHHhcCCC-cccCCCCCcceE--EEEEC--CEEEEEEECC
Confidence 568888888 99999999999998765 356778886543 33333 3678999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
|+.++...+..+++++|++++|+|+++..++.....|+..+.... ...+|+++|+||+|+..... .++ +...++
T Consensus 67 G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~---i~~~l~ 141 (173)
T cd04155 67 GQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEE---IAEALN 141 (173)
T ss_pred CCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHH---HHHHcC
Confidence 998888888889999999999999999888888877776654432 24589999999999864322 222 223333
Q ss_pred C--------eEEEEcCCCCCCHHHHHHHHHH
Q psy3029 243 G--------TYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 243 ~--------~~~evSAktg~gI~eLf~~I~~ 265 (617)
+ +++++||++|.|++++|++|++
T Consensus 142 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 142 LHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 2 4789999999999999999865
No 140
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.81 E-value=5.5e-19 Score=166.35 Aligned_cols=144 Identities=19% Similarity=0.162 Sum_probs=97.5
Q ss_pred CCCCHHHHHHHHHcCC---CCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCC-
Q psy3029 115 LGVGKTSMVVRYIGKM---FSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQ- 190 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~---~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~- 190 (617)
+|||||||+++|++.. +...+.++...+.....+.+.. ...+.+|||+|+++|......++.++|++|+|+|+++
T Consensus 9 ~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~ 87 (164)
T cd04171 9 IDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEG 87 (164)
T ss_pred CCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCC
Confidence 9999999999999642 2222333333333333344432 4579999999999887767778889999999999987
Q ss_pred --hhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccc--cCHHHHHHHHHh---cCCeEEEEcCCCCCCHHHHHHHH
Q psy3029 191 --YHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSRE--VNREEAFHYSKS---IGGTYYETSALQDQGIEDVFLNV 263 (617)
Q Consensus 191 --~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~--v~~~e~~~~~~~---~g~~~~evSAktg~gI~eLf~~I 263 (617)
+.++..+ ..+... . ..|+++|+||+|+..... ...++..++++. .+.+++++||+++.|++++++.|
T Consensus 88 ~~~~~~~~~----~~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (164)
T cd04171 88 IMPQTREHL----EILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYL 161 (164)
T ss_pred ccHhHHHHH----HHHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHH
Confidence 3333322 222221 1 138999999999965421 112333444444 35799999999999999999887
Q ss_pred HH
Q psy3029 264 SK 265 (617)
Q Consensus 264 ~~ 265 (617)
.+
T Consensus 162 ~~ 163 (164)
T cd04171 162 DE 163 (164)
T ss_pred hh
Confidence 53
No 141
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.80 E-value=1.5e-18 Score=172.37 Aligned_cols=164 Identities=34% Similarity=0.495 Sum_probs=135.3
Q ss_pred eEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCC
Q psy3029 85 IKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAG 164 (617)
Q Consensus 85 ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G 164 (617)
+||+++|+ +|||||||+++|.++.+...+.+|++..+...........+++.+|||+|
T Consensus 6 ~kivv~G~----------------------~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~g 63 (219)
T COG1100 6 FKIVVLGD----------------------GGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG 63 (219)
T ss_pred EEEEEEcC----------------------CCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCC
Confidence 68888888 99999999999999999999999999888777777666688999999999
Q ss_pred cccccccchhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcc------------ccCH
Q psy3029 165 QERFRSMAPMYYRNANAALLVFDITQYH-SFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSR------------EVNR 231 (617)
Q Consensus 165 ~e~~~~~~~~~~~~ad~iIlV~Dis~~~-S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~------------~v~~ 231 (617)
+++|..++..|+..++++++|||..+.. +++....|+..+........|+++|+||+|+.... ....
T Consensus 64 q~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 143 (219)
T COG1100 64 QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVL 143 (219)
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcch
Confidence 9999999999999999999999999955 55666789999888776568999999999997653 2222
Q ss_pred HHHHHHHHhc---CCeEEEEcCC--CCCCHHHHHHHHHHHHHHh
Q psy3029 232 EEAFHYSKSI---GGTYYETSAL--QDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 232 ~e~~~~~~~~---g~~~~evSAk--tg~gI~eLf~~I~~~l~~~ 270 (617)
.......... ...++++|++ ++.+|.++|..+...+...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 144 LVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred hhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHh
Confidence 2222222222 3358999999 9999999999999888654
No 142
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=8.2e-19 Score=184.85 Aligned_cols=159 Identities=16% Similarity=0.119 Sum_probs=114.3
Q ss_pred cccCCCCCCCCHHHHHHHHHcCCCCC-cc-CCCcceeEEEEEEEECCeEEEEEEEecCCcccc----cccchh---hhcc
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGKMFSH-HI-SPTIGASFFTAKINVGENKVKLQVWDTAGQERF----RSMAPM---YYRN 178 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~~~~~-~~-~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~----~~~~~~---~~~~ 178 (617)
-++|+|+||||||||+++|++.+... .| ..|..... -.+.+. ....|.+||+||..+- ..+... +++.
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~--G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNL--GVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceE--EEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 46777889999999999999765321 11 12222221 122222 3356899999997421 123333 4557
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCC--CCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCH
Q psy3029 179 ANAALLVFDITQYHSFAAIKTWVKELKRNVD--EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGI 256 (617)
Q Consensus 179 ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~--~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI 256 (617)
++++|+|+|+++.++++.+..|+.++..+.+ .++|++||+||+|+.....+..+....++...+.+++++||+++.||
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 9999999999988889999999998877643 35799999999999765444434444555666789999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy3029 257 EDVFLNVSKGLIC 269 (617)
Q Consensus 257 ~eLf~~I~~~l~~ 269 (617)
++++++|.+.+..
T Consensus 317 ~eL~~~L~~~l~~ 329 (335)
T PRK12299 317 DELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887754
No 143
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.80 E-value=1.9e-18 Score=161.75 Aligned_cols=147 Identities=18% Similarity=0.139 Sum_probs=109.1
Q ss_pred CCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccc------cchhhhc--cCCEE
Q psy3029 111 NWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRS------MAPMYYR--NANAA 182 (617)
Q Consensus 111 i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~------~~~~~~~--~ad~i 182 (617)
++|.+|||||||+++|++..+.....++.+.+.....+.+++ ..+.+|||||++.+.. +...++. ++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 467799999999999998765444445555555555565554 5789999999987664 3456665 99999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHH
Q psy3029 183 LLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLN 262 (617)
Q Consensus 183 IlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~ 262 (617)
|+|+|++++.... .|+..+.. .++|+++|+||+|+.....+..+ ...++..++++++++||+++.|+++++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999998865432 34444433 24799999999999765444333 45677778899999999999999999999
Q ss_pred HHHH
Q psy3029 263 VSKG 266 (617)
Q Consensus 263 I~~~ 266 (617)
|...
T Consensus 152 l~~~ 155 (158)
T cd01879 152 IAEL 155 (158)
T ss_pred HHHH
Confidence 8765
No 144
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.79 E-value=9.7e-19 Score=172.10 Aligned_cols=151 Identities=21% Similarity=0.157 Sum_probs=109.6
Q ss_pred eEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCc--cCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 85 IKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHH--ISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 85 ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~--~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
++|+|+|+ +|||||||+++|++..+... +.+|.. .....+.+.+. ..+.+|||
T Consensus 42 ~~I~iiG~----------------------~g~GKStLl~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~~-~~~~i~Dt 96 (204)
T cd01878 42 PTVALVGY----------------------TNAGKSTLFNALTGADVYAEDQLFATLD--PTTRRLRLPDG-REVLLTDT 96 (204)
T ss_pred CeEEEECC----------------------CCCCHHHHHHHHhcchhccCCccceecc--ceeEEEEecCC-ceEEEeCC
Confidence 58999999 99999999999998764322 223332 23333444332 37899999
Q ss_pred CCcccc---------cccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHH
Q psy3029 163 AGQERF---------RSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREE 233 (617)
Q Consensus 163 ~G~e~~---------~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e 233 (617)
+|..+. ...+ ..+.++|++++|+|++++.++..+..|...+......++|+++|+||+|+......
T Consensus 97 ~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~---- 171 (204)
T cd01878 97 VGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL---- 171 (204)
T ss_pred CccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH----
Confidence 997321 1111 23568999999999999888888777777776655455899999999998654321
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 234 AFHYSKSIGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 234 ~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
..++...+.+++++||+++.|+++++++|...
T Consensus 172 -~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 172 -EERLEAGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred -HHHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 13445556789999999999999999998764
No 145
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.78 E-value=6.1e-18 Score=154.57 Aligned_cols=153 Identities=42% Similarity=0.682 Sum_probs=120.3
Q ss_pred CCCCCCCCHHHHHHHHHcCCC-CCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCC
Q psy3029 111 NWFWLGVGKTSMVVRYIGKMF-SHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDIT 189 (617)
Q Consensus 111 i~G~~nVGKSSLinrl~~~~~-~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis 189 (617)
++|.+|+|||||+++|++... .....++. .++.............+.+||++|...+......++..+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 467799999999999998776 45555665 7777777777777899999999999888777788899999999999999
Q ss_pred ChhhHHHHHHHH-HHHHhcCCCCCeEEEEEECCCCCCccccCHHH-HHHHHHhcCCeEEEEcCCCCCCHHHHHHHHH
Q psy3029 190 QYHSFAAIKTWV-KELKRNVDEPLVLCVVGNKTDLESSREVNREE-AFHYSKSIGGTYYETSALQDQGIEDVFLNVS 264 (617)
Q Consensus 190 ~~~S~~~l~~~l-~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e-~~~~~~~~g~~~~evSAktg~gI~eLf~~I~ 264 (617)
++.++..+..|+ ..+.......+|+++|+||+|+.......... ..........+++++|++++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999988888772 22233334558999999999986544332222 3344555667999999999999999999875
No 146
>PF14438 SM-ATX: Ataxin 2 SM domain; PDB: 1M5Q_1.
Probab=99.78 E-value=1.3e-19 Score=150.03 Aligned_cols=72 Identities=25% Similarity=0.425 Sum_probs=50.4
Q ss_pred chHhHHhHhhcCCEEEEEEeCCcEEEEEEeeecC---CceEEEEeeeecCCCCC--CCCCCCcccceeeeecCceeE
Q psy3029 450 ARFMQAITLHIGDKVTVYTVHGKQFEGYLKTFSK---QFELVISMTHQVDPENP--QCIDPNTVVDMKIFKLDDIVR 521 (617)
Q Consensus 450 ~r~~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~---~~~~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~v~ 521 (617)
|||+|+++++||++|+||+|||++|||||+++++ +++|+|+|||++..+.. ..+...++.++|+|+++|||+
T Consensus 1 dRl~~l~~~lvG~~V~V~~~~G~~yeGif~s~s~~~~~~~vvLk~a~~~~~~~~~~~~~~~~~~~~tlii~~~dvv~ 77 (77)
T PF14438_consen 1 DRLVYLLTNLVGQTVEVTTKNGSVYEGIFHSASPESNEFDVVLKMARKVPKSDQSNSDPLSSEIVETLIIPAKDVVQ 77 (77)
T ss_dssp ---HHHHHTTTTSEEEEEETTS-EEEEEEEEE-T---T--EEEEEEEETTS------EEEEEEE-GGGEEE------
T ss_pred ChHHHHHHhCcCCEEEEEECCCCEEEEEEEeCCCcccceeEEEEeeeeccccccccCCccCCCCCceEEEeccccCC
Confidence 7999999999999999999999999999999998 99999999999976543 344557899999999999986
No 147
>KOG0073|consensus
Probab=99.78 E-value=3.6e-18 Score=155.71 Aligned_cols=161 Identities=23% Similarity=0.321 Sum_probs=127.2
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
+..++|.|+|- .|+|||||+++|.+.. .+...||.|.++.+..+ +.+.+++||
T Consensus 14 erE~riLiLGL----------------------dNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~~----~~~~L~iwD 66 (185)
T KOG0073|consen 14 EREVRILILGL----------------------DNSGKTTIVKKLLGED-TDTISPTLGFQIKTLEY----KGYTLNIWD 66 (185)
T ss_pred hheeEEEEEec----------------------CCCCchhHHHHhcCCC-ccccCCccceeeEEEEe----cceEEEEEE
Confidence 44577888887 9999999999999877 67788999977665544 678999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHh-cCCCCCeEEEEEECCCCCCc---cccCH-HHHHH
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKR-NVDEPLVLCVVGNKTDLESS---REVNR-EEAFH 236 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~-~~~~~iPvIlVgNK~DL~~~---~~v~~-~e~~~ 236 (617)
.+|+...+..|+.||+.+|++|+|+|.+++..+++....+..+.. ..--..|++|++||.|+... +.+.. -+...
T Consensus 67 vGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~ 146 (185)
T KOG0073|consen 67 VGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEE 146 (185)
T ss_pred cCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHH
Confidence 999999999999999999999999999999888876655555432 11123699999999999632 11111 12334
Q ss_pred HHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 237 ~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
+++...++++-|||.+|+++.+-++||+..+..
T Consensus 147 l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 147 LAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred hccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence 557778899999999999999999999998865
No 148
>PRK04213 GTP-binding protein; Provisional
Probab=99.78 E-value=5.5e-19 Score=173.34 Aligned_cols=150 Identities=25% Similarity=0.285 Sum_probs=102.5
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..++|+++|+ +|||||||+|+|++..+...+.+ |.++....+... .+.+|||
T Consensus 8 ~~~~i~i~G~----------------------~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt 59 (201)
T PRK04213 8 RKPEIVFVGR----------------------SNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDL 59 (201)
T ss_pred CCCEEEEECC----------------------CCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeC
Confidence 4468888888 99999999999998876544444 555554444332 5899999
Q ss_pred CC-----------cccccccchhhhc----cCCEEEEEEeCCChhhHHHHHHH------------HHHHHhcCCCCCeEE
Q psy3029 163 AG-----------QERFRSMAPMYYR----NANAALLVFDITQYHSFAAIKTW------------VKELKRNVDEPLVLC 215 (617)
Q Consensus 163 ~G-----------~e~~~~~~~~~~~----~ad~iIlV~Dis~~~S~~~l~~~------------l~~i~~~~~~~iPvI 215 (617)
+| ++++..++..|+. .++++++|+|.++...+ +.+| +..+.. .++|++
T Consensus 60 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~---~~~p~i 134 (201)
T PRK04213 60 PGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEI--IERWEGRGEIPIDVEMFDFLRE---LGIPPI 134 (201)
T ss_pred CccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCcccccc--ccccccCCCcHHHHHHHHHHHH---cCCCeE
Confidence 99 4566665555654 35788888887543221 0122 222222 357999
Q ss_pred EEEECCCCCCccccCHHHHHHHHHhcCC---------eEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 216 VVGNKTDLESSREVNREEAFHYSKSIGG---------TYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 216 lVgNK~DL~~~~~v~~~e~~~~~~~~g~---------~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
||+||+|+.... .+...+++..+++ +++++||++| ||++++++|.+.+..
T Consensus 135 iv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 135 VAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred EEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 999999986433 2344555666654 5899999999 999999999887643
No 149
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.77 E-value=3.2e-18 Score=167.20 Aligned_cols=141 Identities=19% Similarity=0.185 Sum_probs=102.9
Q ss_pred CCCCHHHHHHHHHc--CCCCCcc------------CCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCC
Q psy3029 115 LGVGKTSMVVRYIG--KMFSHHI------------SPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNAN 180 (617)
Q Consensus 115 ~nVGKSSLinrl~~--~~~~~~~------------~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad 180 (617)
+|||||||+++|+. +.+...+ ..+.|.++......+..+.+.+.+|||+|+++|..++..+++++|
T Consensus 11 ~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 90 (194)
T cd01891 11 VDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLSMVD 90 (194)
T ss_pred CCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcC
Confidence 99999999999996 4443332 234666666666666667789999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccc-cCHHHHHHHHH-------hcCCeEEEEcCCC
Q psy3029 181 AALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSRE-VNREEAFHYSK-------SIGGTYYETSALQ 252 (617)
Q Consensus 181 ~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~-v~~~e~~~~~~-------~~g~~~~evSAkt 252 (617)
++++|||+++.. +.....|+..+.. ..+|++||+||+|+...+. ...+++.+++. ..+++++++||++
T Consensus 91 ~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~ 166 (194)
T cd01891 91 GVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKN 166 (194)
T ss_pred EEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhc
Confidence 999999998742 2333344444433 3479999999999964322 12334444442 2367899999999
Q ss_pred CCCHHHH
Q psy3029 253 DQGIEDV 259 (617)
Q Consensus 253 g~gI~eL 259 (617)
|.|+.++
T Consensus 167 g~~~~~~ 173 (194)
T cd01891 167 GWASLNL 173 (194)
T ss_pred ccccccc
Confidence 9888555
No 150
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.76 E-value=5.1e-18 Score=161.82 Aligned_cols=153 Identities=20% Similarity=0.173 Sum_probs=104.7
Q ss_pred CCCCCCCCHHHHHHHHHcCCCC-Ccc-CCCcceeEEEEEEEECCeEEEEEEEecCCccc----ccccc---hhhhccCCE
Q psy3029 111 NWFWLGVGKTSMVVRYIGKMFS-HHI-SPTIGASFFTAKINVGENKVKLQVWDTAGQER----FRSMA---PMYYRNANA 181 (617)
Q Consensus 111 i~G~~nVGKSSLinrl~~~~~~-~~~-~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~----~~~~~---~~~~~~ad~ 181 (617)
|+|.+|||||||+++|++..+. ..+ ..|.... ...+.+. ....+.+|||||... ...+. ..++..+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~--~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPN--LGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCc--ceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence 4677999999999999987641 122 1222222 2223333 145789999999732 22222 234678999
Q ss_pred EEEEEeCCCh------hhHHHHHHHHHHHHhcCC-------CCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEE
Q psy3029 182 ALLVFDITQY------HSFAAIKTWVKELKRNVD-------EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYET 248 (617)
Q Consensus 182 iIlV~Dis~~------~S~~~l~~~l~~i~~~~~-------~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~ev 248 (617)
+++|+|++++ .++..+..|...+..... ..+|+++|+||+|+..................+..++++
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEE
Confidence 9999999988 467777777777765432 257999999999997554433222233444456789999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q psy3029 249 SALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 249 SAktg~gI~eLf~~I~~~ 266 (617)
||+++.|+++++++|...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998653
No 151
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.75 E-value=1.6e-17 Score=157.34 Aligned_cols=149 Identities=18% Similarity=0.106 Sum_probs=100.3
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEEC-CeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhh
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG-ENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHS 193 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S 193 (617)
+|||||||+++|+...+.....++...++....+... +....+.+|||+|++.|..++..++..+|++++|+|+++...
T Consensus 9 ~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~ 88 (168)
T cd01887 9 VDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVM 88 (168)
T ss_pred CCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCcc
Confidence 9999999999999887765443333333322233322 135789999999999888888888999999999999987532
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccC-HHHHHHHHH------hcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 194 FAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVN-REEAFHYSK------SIGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 194 ~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~-~~e~~~~~~------~~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
.... ..+..+.. ..+|+++|+||+|+....... .+....+.. ...++++++||++|.|+++++++|.+.
T Consensus 89 ~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 89 PQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred HHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHh
Confidence 2111 11222222 347999999999986432111 111111111 113589999999999999999999775
Q ss_pred H
Q psy3029 267 L 267 (617)
Q Consensus 267 l 267 (617)
.
T Consensus 165 ~ 165 (168)
T cd01887 165 A 165 (168)
T ss_pred h
Confidence 4
No 152
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.75 E-value=2.1e-17 Score=175.48 Aligned_cols=152 Identities=19% Similarity=0.111 Sum_probs=107.5
Q ss_pred eEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCC
Q psy3029 85 IKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAG 164 (617)
Q Consensus 85 ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G 164 (617)
++|+++|. +|||||||+|+|++..+.....+....+.....+.+.+ ...+.||||+|
T Consensus 190 ~~ValvG~----------------------~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G 246 (351)
T TIGR03156 190 PTVALVGY----------------------TNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVG 246 (351)
T ss_pred cEEEEECC----------------------CCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCc
Confidence 58999999 99999999999998764322222222334455555543 24789999999
Q ss_pred ccc---------ccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHH
Q psy3029 165 QER---------FRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235 (617)
Q Consensus 165 ~e~---------~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~ 235 (617)
..+ |... ...+.++|++|+|+|++++.++..+..|...+......++|+++|+||+|+..... ..
T Consensus 247 ~~~~l~~~lie~f~~t-le~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~ 320 (351)
T TIGR03156 247 FIRDLPHELVAAFRAT-LEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IE 320 (351)
T ss_pred ccccCCHHHHHHHHHH-HHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HH
Confidence 722 2222 22477999999999999998888777676666554434579999999999864322 11
Q ss_pred HHHHhcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 236 ~~~~~~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
.+. ....+++++||++|.|++++++.|.+.
T Consensus 321 ~~~-~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 321 RLE-EGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred HHH-hCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 111 222468999999999999999998753
No 153
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.74 E-value=2e-17 Score=170.18 Aligned_cols=152 Identities=17% Similarity=0.054 Sum_probs=101.1
Q ss_pred ccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccccc-c-------cchhhhccCC
Q psy3029 109 EANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFR-S-------MAPMYYRNAN 180 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~-~-------~~~~~~~~ad 180 (617)
++++|.+|||||||+|+|++.++. ...+.++.+..............+.||||||..... . ....++..+|
T Consensus 3 V~liG~pnvGKSTLln~L~~~~~~-~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 3 VAILGRPNVGKSTLLNQLHGQKIS-ITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEECCCCCCHHHHHHHHhCCcEe-ecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 444445999999999999998743 233333333222211122223568999999975421 1 1345678999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHH
Q psy3029 181 AALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG-TYYETSALQDQGIEDV 259 (617)
Q Consensus 181 ~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eL 259 (617)
++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+..... ..+....++...+. +++++||++|.|++++
T Consensus 82 vvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L 155 (270)
T TIGR00436 82 LILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSFL 155 (270)
T ss_pred EEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHH
Confidence 999999999876654 334444433 3479999999999864322 12333444444444 8999999999999999
Q ss_pred HHHHHHHH
Q psy3029 260 FLNVSKGL 267 (617)
Q Consensus 260 f~~I~~~l 267 (617)
++.|.+.+
T Consensus 156 ~~~l~~~l 163 (270)
T TIGR00436 156 AAFIEVHL 163 (270)
T ss_pred HHHHHHhC
Confidence 99998765
No 154
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=1.7e-17 Score=154.76 Aligned_cols=145 Identities=21% Similarity=0.125 Sum_probs=97.7
Q ss_pred cCCCCCCCCHHHHHHHHHcCCC--CCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccc--------cchhhhccC
Q psy3029 110 ANWFWLGVGKTSMVVRYIGKMF--SHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRS--------MAPMYYRNA 179 (617)
Q Consensus 110 ~i~G~~nVGKSSLinrl~~~~~--~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~--------~~~~~~~~a 179 (617)
+++|.+|||||||+++|++... .... +....+........ ....+.+|||||...+.. ....+++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~-~~~t~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDT-PGVTRDRIYGEAEW--GGREFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCC-CCceeCceeEEEEE--CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 4567799999999999998652 2222 22222223333333 336799999999877543 334567899
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHH
Q psy3029 180 NAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG-TYYETSALQDQGIED 258 (617)
Q Consensus 180 d~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~e 258 (617)
|++++|+|..++.+.... .++..+.. ...|+++|+||+|+...... ......+++ +++++||+++.|+++
T Consensus 78 d~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 78 DVILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGD 148 (157)
T ss_pred CEEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHH
Confidence 999999999876544332 12222222 23799999999998654321 223334566 789999999999999
Q ss_pred HHHHHHHH
Q psy3029 259 VFLNVSKG 266 (617)
Q Consensus 259 Lf~~I~~~ 266 (617)
++++|.+.
T Consensus 149 l~~~l~~~ 156 (157)
T cd01894 149 LLDAILEL 156 (157)
T ss_pred HHHHHHhh
Confidence 99999864
No 155
>KOG0070|consensus
Probab=99.74 E-value=1.3e-17 Score=156.22 Aligned_cols=160 Identities=21% Similarity=0.289 Sum_probs=127.6
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
..+.++|+++|- -|+||||++.+|..+++.. ..||+|.......+ +++.|.+|
T Consensus 14 ~~~e~~IlmlGL----------------------D~AGKTTILykLk~~E~vt-tvPTiGfnVE~v~y----kn~~f~vW 66 (181)
T KOG0070|consen 14 GKKEMRILMVGL----------------------DAAGKTTILYKLKLGEIVT-TVPTIGFNVETVEY----KNISFTVW 66 (181)
T ss_pred CcceEEEEEEec----------------------cCCCceeeeEeeccCCccc-CCCccccceeEEEE----cceEEEEE
Confidence 345578888887 9999999999998887554 48999987666555 47899999
Q ss_pred ecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHHHHHHH
Q psy3029 161 DTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSK 239 (617)
Q Consensus 161 Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~ 239 (617)
|.+|+++++.+++.|+.+.+++|||+|.+|++-+.+..+.+..+..... ...|+++.+||.|+... .+..++.+...
T Consensus 67 DvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei~~~L~ 144 (181)
T KOG0070|consen 67 DVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEITNKLG 144 (181)
T ss_pred ecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHHHHHhHhh
Confidence 9999999999999999999999999999999988888776666655443 56899999999998643 22333322222
Q ss_pred -----hcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 240 -----SIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 240 -----~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
.....+..|+|.+|+|+.+.+++|.+.+..
T Consensus 145 l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 145 LHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred hhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence 223367889999999999999999887743
No 156
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.74 E-value=1.4e-17 Score=155.89 Aligned_cols=140 Identities=18% Similarity=0.185 Sum_probs=93.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccccc------ccchhhh--ccCCEEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFR------SMAPMYY--RNANAALLVF 186 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~------~~~~~~~--~~ad~iIlV~ 186 (617)
||||||||+|+|++.+.. ....+|.+...+...+......+.++|+||..... .....|+ ...|++|+|+
T Consensus 9 PNvGKStLfN~Ltg~~~~--v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~Vv 86 (156)
T PF02421_consen 9 PNVGKSTLFNALTGAKQK--VGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVV 86 (156)
T ss_dssp TTSSHHHHHHHHHTTSEE--EEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEE
T ss_pred CCCCHHHHHHHHHCCCce--ecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEEC
Confidence 999999999999998743 33444555544444333233678999999953222 2334444 4899999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHH
Q psy3029 187 DITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNV 263 (617)
Q Consensus 187 Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I 263 (617)
|+++.+.-. ..+.++.+ ..+|+++|+||+|+...+.+.. ....+.+.+|++++.+||++++|+++|++.|
T Consensus 87 Da~~l~r~l---~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 87 DATNLERNL---YLTLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EGGGHHHHH---HHHHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred CCCCHHHHH---HHHHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 998754222 23333433 3479999999999865444332 2456778889999999999999999999875
No 157
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.74 E-value=4.5e-17 Score=145.76 Aligned_cols=107 Identities=32% Similarity=0.563 Sum_probs=84.2
Q ss_pred CCCCHHHHHHHHHcCCCC--CccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChh
Q psy3029 115 LGVGKTSMVVRYIGKMFS--HHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYH 192 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~--~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~ 192 (617)
+|||||||+++|++..+. ..+.++.+.++.............+.+||++|++.+...+..++.++|++|+|||++++.
T Consensus 8 ~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~ 87 (119)
T PF08477_consen 8 SGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPE 87 (119)
T ss_dssp TTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHH
T ss_pred CCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChH
Confidence 999999999999988765 233445555555556667777777999999999999888888899999999999999999
Q ss_pred hHHHHH---HHHHHHHhcCCCCCeEEEEEECCC
Q psy3029 193 SFAAIK---TWVKELKRNVDEPLVLCVVGNKTD 222 (617)
Q Consensus 193 S~~~l~---~~l~~i~~~~~~~iPvIlVgNK~D 222 (617)
||..+. +|+..+...... +|++||+||.|
T Consensus 88 s~~~~~~~~~~l~~~~~~~~~-~piilv~nK~D 119 (119)
T PF08477_consen 88 SLEYLSQLLKWLKNIRKRDKN-IPIILVGNKSD 119 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHSSC-SEEEEEEE-TC
T ss_pred HHHHHHHHHHHHHHHHccCCC-CCEEEEEeccC
Confidence 998874 466666655444 89999999998
No 158
>PRK15494 era GTPase Era; Provisional
Probab=99.74 E-value=3.5e-17 Score=173.48 Aligned_cols=154 Identities=21% Similarity=0.317 Sum_probs=106.1
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeE--EEEEEEECCeEEEEEE
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASF--FTAKINVGENKVKLQV 159 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~--~~~~i~~~~~~~~l~i 159 (617)
...++|+++|+ +|||||||+|+|++.++. .+.+.++.++ ....+..+ ...+.|
T Consensus 50 ~k~~kV~ivG~----------------------~nvGKSTLin~l~~~k~~-ivs~k~~tTr~~~~~~~~~~--~~qi~~ 104 (339)
T PRK15494 50 QKTVSVCIIGR----------------------PNSGKSTLLNRIIGEKLS-IVTPKVQTTRSIITGIITLK--DTQVIL 104 (339)
T ss_pred cceeEEEEEcC----------------------CCCCHHHHHHHHhCCcee-eccCCCCCccCcEEEEEEeC--CeEEEE
Confidence 34567888888 999999999999988763 3334444333 22333333 356899
Q ss_pred EecCCccc-ccccch-------hhhccCCEEEEEEeCCChhhHHHHHH-HHHHHHhcCCCCCeEEEEEECCCCCCccccC
Q psy3029 160 WDTAGQER-FRSMAP-------MYYRNANAALLVFDITQYHSFAAIKT-WVKELKRNVDEPLVLCVVGNKTDLESSREVN 230 (617)
Q Consensus 160 ~Dt~G~e~-~~~~~~-------~~~~~ad~iIlV~Dis~~~S~~~l~~-~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~ 230 (617)
|||||+.+ +..+.. .++..+|++|+|+|..+ ++..+.. |+..+... ..|+++|+||+|+... .
T Consensus 105 ~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~ 176 (339)
T PRK15494 105 YDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---Y 176 (339)
T ss_pred EECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---c
Confidence 99999843 322222 34679999999999765 4555543 55555432 3477889999998643 2
Q ss_pred HHHHHHHHHhcC--CeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 231 REEAFHYSKSIG--GTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 231 ~~e~~~~~~~~g--~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
..++.+++...+ ..++++||++|.|+++++++|...+.
T Consensus 177 ~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 177 LNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAK 216 (339)
T ss_pred HHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCC
Confidence 344555655544 57999999999999999999987664
No 159
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.73 E-value=5.4e-17 Score=170.91 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=108.0
Q ss_pred ccCCCCCCCCHHHHHHHHHcCCCC-Ccc-CCCcceeEEEEEEEECCeEEEEEEEecCCcccc----cccchhhh---ccC
Q psy3029 109 EANWFWLGVGKTSMVVRYIGKMFS-HHI-SPTIGASFFTAKINVGENKVKLQVWDTAGQERF----RSMAPMYY---RNA 179 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~~~~~-~~~-~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~----~~~~~~~~---~~a 179 (617)
++|+|+||||||||+++|++.+.. +.| ..|..... -.+.+++ ...+.|||+||..+. ..+...|+ +.+
T Consensus 160 V~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~i--g~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 160 VGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNL--GVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEE--EEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 445555999999999999986532 122 12222222 1223322 367899999997432 23444444 479
Q ss_pred CEEEEEEeCCCh---hhHHHHHHHHHHHHhcCC--CCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy3029 180 NAALLVFDITQY---HSFAAIKTWVKELKRNVD--EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQ 254 (617)
Q Consensus 180 d~iIlV~Dis~~---~S~~~l~~~l~~i~~~~~--~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~ 254 (617)
+++|+|+|+++. .+++.+..|..++..+.. ...|++||+||+|+..... ..+....++..++.+++++||+++.
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence 999999999986 577888888887766532 3479999999999975433 2334445666677899999999999
Q ss_pred CHHHHHHHHHHHH
Q psy3029 255 GIEDVFLNVSKGL 267 (617)
Q Consensus 255 gI~eLf~~I~~~l 267 (617)
||++++++|.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998754
No 160
>COG1159 Era GTPase [General function prediction only]
Probab=99.73 E-value=8.3e-18 Score=169.08 Aligned_cols=162 Identities=17% Similarity=0.144 Sum_probs=114.5
Q ss_pred CCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccc--------ccccchh
Q psy3029 103 RVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQER--------FRSMAPM 174 (617)
Q Consensus 103 ~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~--------~~~~~~~ 174 (617)
.|.+.|+||+|+||||||||+|++++.+ .+.+++.+..++......+..+...+.|+||||..+ +......
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~K-isIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQK-ISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCc-eEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 3567788888889999999999999998 456666666666665555555678899999999743 2233445
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC-eEEEEcCCCC
Q psy3029 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG-TYYETSALQD 253 (617)
Q Consensus 175 ~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~-~~~evSAktg 253 (617)
.+..+|+++||+|+.+... .-++|+-+..+. .+.|+++++||+|.........+....+...... .++++||++|
T Consensus 82 sl~dvDlilfvvd~~~~~~--~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 82 ALKDVDLILFVVDADEGWG--PGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred HhccCcEEEEEEeccccCC--ccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence 5779999999999987543 233443333222 3469999999999876544212222222222222 8999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy3029 254 QGIEDVFLNVSKGLIC 269 (617)
Q Consensus 254 ~gI~eLf~~I~~~l~~ 269 (617)
.|++.|.+.+...+.+
T Consensus 158 ~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 158 DNVDTLLEIIKEYLPE 173 (298)
T ss_pred CCHHHHHHHHHHhCCC
Confidence 9999999999887754
No 161
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.73 E-value=4.9e-17 Score=177.55 Aligned_cols=152 Identities=16% Similarity=0.163 Sum_probs=112.2
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCC-CccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~-~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
..+||+++|+ +|||||||+|+|++.... ....+..+.++....+.+++ +.+.+||
T Consensus 202 ~g~kVvIvG~----------------------~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~D 257 (442)
T TIGR00450 202 DGFKLAIVGS----------------------PNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLD 257 (442)
T ss_pred cCCEEEEECC----------------------CCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEee
Confidence 3478999999 999999999999986531 11223333444445555554 5578999
Q ss_pred cCCccccccc--------chhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHH
Q psy3029 162 TAGQERFRSM--------APMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREE 233 (617)
Q Consensus 162 t~G~e~~~~~--------~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e 233 (617)
|+|+.++... ...+++++|++|+|||++++.+++.. |+..+.. .++|+++|+||+|+... +
T Consensus 258 TaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~ 326 (442)
T TIGR00450 258 TAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------S 326 (442)
T ss_pred CCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------c
Confidence 9998654432 24578899999999999998887765 7666543 34699999999998543 1
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 234 AFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 234 ~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
...++..++++++++||++ .||+++|+.|.+.+...
T Consensus 327 ~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 327 LEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred hhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 2345666778899999998 69999999999888654
No 162
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.73 E-value=6.4e-17 Score=150.76 Aligned_cols=138 Identities=20% Similarity=0.197 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHcCCCCC-ccCCCcceeEEEEEEEECCeEEEEEEEecCCccccccc--------chhhhccCCEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSH-HISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSM--------APMYYRNANAALLV 185 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~-~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~--------~~~~~~~ad~iIlV 185 (617)
+|+|||||++++++..... ...+....++....+... ...+.+|||+|...+... ...++.++|++++|
T Consensus 10 ~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 87 (157)
T cd04164 10 PNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFV 87 (157)
T ss_pred CCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEE
Confidence 9999999999999876321 112222223333333333 467899999998655322 23466799999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy3029 186 FDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 186 ~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~ 265 (617)
+|++++.+......|.. ...+|+++|+||+|+...... .....+.+++++||+++.|+++++++|..
T Consensus 88 ~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 154 (157)
T cd04164 88 IDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDELKEALLE 154 (157)
T ss_pred EECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 99998777666543322 234799999999998654332 33445678999999999999999999876
Q ss_pred HH
Q psy3029 266 GL 267 (617)
Q Consensus 266 ~l 267 (617)
.+
T Consensus 155 ~~ 156 (157)
T cd04164 155 LA 156 (157)
T ss_pred hh
Confidence 53
No 163
>KOG0075|consensus
Probab=99.73 E-value=4.9e-18 Score=151.80 Aligned_cols=144 Identities=24% Similarity=0.364 Sum_probs=117.0
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
.++|||||+|.+..+.+.+...||+|...+. +..+.+.+.+||.+|+.+|..+++.|++.++++++|+|+.+++.+
T Consensus 29 q~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~ 104 (186)
T KOG0075|consen 29 QNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKL 104 (186)
T ss_pred ccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccc
Confidence 9999999999999989999999999976433 445789999999999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC--------CeEEEEcCCCCCCHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG--------GTYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 195 ~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g--------~~~~evSAktg~gI~eLf~~I~~ 265 (617)
.....-+..+.... -..+|+++.|||.|+... ... ..+..++| +.+|.+|+++..||+.+.+||++
T Consensus 105 ~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~---~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~ 179 (186)
T KOG0075|consen 105 EASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSK---IALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIE 179 (186)
T ss_pred hhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccH---HHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHH
Confidence 76655555554432 256899999999998643 222 13334444 36899999999999999999987
Q ss_pred HH
Q psy3029 266 GL 267 (617)
Q Consensus 266 ~l 267 (617)
+-
T Consensus 180 hs 181 (186)
T KOG0075|consen 180 HS 181 (186)
T ss_pred Hh
Confidence 65
No 164
>KOG3883|consensus
Probab=99.73 E-value=9.5e-17 Score=144.50 Aligned_cols=165 Identities=22% Similarity=0.319 Sum_probs=131.9
Q ss_pred ccccCCCCCCCCHHHHHHHHHcCCC--CCccCCCcceeEEEEEEE-ECCeEEEEEEEecCCcccc-cccchhhhccCCEE
Q psy3029 107 CFEANWFWLGVGKTSMVVRYIGKMF--SHHISPTIGASFFTAKIN-VGENKVKLQVWDTAGQERF-RSMAPMYYRNANAA 182 (617)
Q Consensus 107 ~~~~i~G~~nVGKSSLinrl~~~~~--~~~~~~t~g~~~~~~~i~-~~~~~~~l~i~Dt~G~e~~-~~~~~~~~~~ad~i 182 (617)
|+++++|..+||||+|+.+++-+.. ...+.||+...| ...+. -.+-.-.+.|+||+|...+ .++-+.|+.-+|++
T Consensus 10 ~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY-~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDaf 88 (198)
T KOG3883|consen 10 CKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIY-VASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAF 88 (198)
T ss_pred eEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhe-eEeeecCCChhheEEEeecccccCchhhhhHhHhccCceE
Confidence 5555555599999999999985543 345667876543 33333 3444567999999998777 57778999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHH
Q psy3029 183 LLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFL 261 (617)
Q Consensus 183 IlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~ 261 (617)
++|||..+++||+.++..-..|.++. .+.+||++++||+|+.+++++..+-+..||+.-.+..++++|.....+-+.|.
T Consensus 89 VLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~ 168 (198)
T KOG3883|consen 89 VLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFT 168 (198)
T ss_pred EEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHH
Confidence 99999999999988765444554443 35699999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q psy3029 262 NVSKGLICLSQ 272 (617)
Q Consensus 262 ~I~~~l~~~~~ 272 (617)
.+...+.....
T Consensus 169 ~l~~rl~~pqs 179 (198)
T KOG3883|consen 169 YLASRLHQPQS 179 (198)
T ss_pred HHHHhccCCcc
Confidence 99988765543
No 165
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=4.7e-17 Score=180.14 Aligned_cols=149 Identities=17% Similarity=0.137 Sum_probs=101.6
Q ss_pred CCCCHHHHHHHHHcCCCC-CccCCCcceeEEEEEEEECCeEEEEEEEecCCcc----------cccccc-hhhhccCCEE
Q psy3029 115 LGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQVWDTAGQE----------RFRSMA-PMYYRNANAA 182 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~-~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e----------~~~~~~-~~~~~~ad~i 182 (617)
+|||||||+|+|++..+. ....++.+.+.....+..++. .+.+|||+|.. .|..+. ..+++++|++
T Consensus 220 ~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~v 297 (472)
T PRK03003 220 PNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVA 297 (472)
T ss_pred CCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEE
Confidence 999999999999987642 223334444444455555554 46799999963 222222 2457899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcccc--CHHHHH-HHHHhcCCeEEEEcCCCCCCHHHH
Q psy3029 183 LLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREV--NREEAF-HYSKSIGGTYYETSALQDQGIEDV 259 (617)
Q Consensus 183 IlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v--~~~e~~-~~~~~~g~~~~evSAktg~gI~eL 259 (617)
|+|+|++++.++.++. ++..+.. ..+|+|||+||+|+...... ..++.. .+.....++++++||++|.||+++
T Consensus 298 ilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~l 373 (472)
T PRK03003 298 VVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKL 373 (472)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHH
Confidence 9999999988887764 4454443 34799999999999643211 111121 122223468999999999999999
Q ss_pred HHHHHHHHHH
Q psy3029 260 FLNVSKGLIC 269 (617)
Q Consensus 260 f~~I~~~l~~ 269 (617)
|+.|.+.+..
T Consensus 374 f~~i~~~~~~ 383 (472)
T PRK03003 374 VPALETALES 383 (472)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 166
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.71 E-value=4.6e-17 Score=153.99 Aligned_cols=133 Identities=14% Similarity=0.117 Sum_probs=93.2
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccc----ccccchhhhccCCEEEEEEeCCC
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQER----FRSMAPMYYRNANAALLVFDITQ 190 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~----~~~~~~~~~~~ad~iIlV~Dis~ 190 (617)
+|||||||+|+|.+.. . ...++.++ .+... .+|||||+.. +.......+.++|++|+|+|+++
T Consensus 10 ~~~GKstl~~~l~~~~-~-~~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~ 76 (158)
T PRK15467 10 VGAGKTTLFNALQGNY-T-LARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGAND 76 (158)
T ss_pred CCCCHHHHHHHHcCCC-c-cCccceEE-------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCC
Confidence 9999999999987653 1 11223222 22222 2699999732 22222234789999999999998
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC--eEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 191 YHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG--TYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 191 ~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~--~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
..++ +..|+..+. ...|+++|+||+|+.. ...+...+++.+.++ +++++||++|.||+++|+.|.+.+.
T Consensus 77 ~~s~--~~~~~~~~~----~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 77 PESR--LPAGLLDIG----VSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred cccc--cCHHHHhcc----CCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhch
Confidence 8765 334554431 2468999999999854 234556677777775 8999999999999999999987664
Q ss_pred H
Q psy3029 269 C 269 (617)
Q Consensus 269 ~ 269 (617)
.
T Consensus 148 ~ 148 (158)
T PRK15467 148 Q 148 (158)
T ss_pred h
Confidence 3
No 167
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.71 E-value=3.4e-17 Score=178.27 Aligned_cols=289 Identities=16% Similarity=0.271 Sum_probs=185.7
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECC--eEEEEEEEecCCcccccccchhhhc----cCCEEEEEEeC
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE--NKVKLQVWDTAGQERFRSMAPMYYR----NANAALLVFDI 188 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~--~~~~l~i~Dt~G~e~~~~~~~~~~~----~ad~iIlV~Di 188 (617)
.++|||||+.+|.+. +.+.++.|.+|....+.-++ ...++.+|-..|...+..+++..+. .--+||+|+|+
T Consensus 34 ~~~GKttli~~L~~~---e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDl 110 (472)
T PF05783_consen 34 KGSGKTTLIARLQGI---EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDL 110 (472)
T ss_pred CCCchHHHHHHhhcc---CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecC
Confidence 999999999999764 35667888887666554432 3357899999887777777776665 23588999999
Q ss_pred CChhhH-HHHHHHHHHHHhcCC----------------------------------------------------------
Q psy3029 189 TQYHSF-AAIKTWVKELKRNVD---------------------------------------------------------- 209 (617)
Q Consensus 189 s~~~S~-~~l~~~l~~i~~~~~---------------------------------------------------------- 209 (617)
+.|+.+ +.+.+|+..+.++..
T Consensus 111 S~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~ 190 (472)
T PF05783_consen 111 SKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGV 190 (472)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccccCCCCCcc
Confidence 999864 566666643321100
Q ss_pred ----CCCeEEEEEECCCCCC----cc-------ccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhhhcc
Q psy3029 210 ----EPLVLCVVGNKTDLES----SR-------EVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQES 274 (617)
Q Consensus 210 ----~~iPvIlVgNK~DL~~----~~-------~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~~~~~ 274 (617)
-.+|++||++|+|... +. .+..+.++.||..+|+.+|++|++...+++.|+.+|.+.+......
T Consensus 191 l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~~f~- 269 (472)
T PF05783_consen 191 LTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGFPFK- 269 (472)
T ss_pred cccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccCCCC-
Confidence 0189999999999732 11 1223446788889999999999999999999999988877543311
Q ss_pred cccccccccccCCccCCCCCCcccccCCCCCCCCCCchhhhheeeeccCCCCCCCcceeeeeeecccccccceeccc---
Q psy3029 275 LHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLTEAETAKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYI--- 351 (617)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ss~~~~~~~~~~~~v~ivG~~~~s~~~~~~~~~~g~~~vGKssi~~~~~--- 351 (617)
.++......+++|.. ||++.+|..++..-+
T Consensus 270 --------------------------------~~~~vv~~d~ifIP~---------------GwDs~~kI~il~e~f~~~ 302 (472)
T PF05783_consen 270 --------------------------------TPAQVVERDAIFIPA---------------GWDSWGKIRILRENFDTE 302 (472)
T ss_pred --------------------------------CCceeecccccccCC---------------CCCCHHhcCccccccccc
Confidence 112222223344433 899999987776543
Q ss_pred --cCcccCcc-CCccceeeEEEEE--EECCEEEEEEeecCCCceeeeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3029 352 --GKMFSHHI-SPTIGASFFTAKI--NVGENKVKLQLRTGLKVSKIPVPTRNREGATTGRITEPDTMNNNNKKKNRVATT 426 (617)
Q Consensus 352 --~~~f~~~~-~pTIg~df~~k~v--~~d~~~v~LqI~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (617)
.+.|.... .|++..-...+.+ ..++.++.|+-++.++.+.++.++|+ +++.+..++++++...+........++
T Consensus 303 ~~~~~~~~~i~~p~~~~~~~~~e~~~~aedeQ~fL~~~~~~L~~~~~~~~r~-~s~~r~~sgSp~t~~~s~~~~~~s~~~ 381 (472)
T PF05783_consen 303 KPEDPYEDIIPKPPVRKFVHEKEIEVEAEDEQEFLMKQQSLLSKAPPAPGRG-ESPPRSQSGSPRTPGKSSPANVGSASP 381 (472)
T ss_pred cCCCcccccccCCCcccccccccchhhhhHHHHHHHHHHHHHhcccccccCC-CCCCCCccccccccCCCCCCCccccCc
Confidence 23444433 4555433334445 66778889998999999999988887 656666677766654444444443333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCchHhHHhHhhc
Q psy3029 427 GRPVRSRGGPDRLAINPEGVYCNARFMQAITLHI 460 (617)
Q Consensus 427 ~r~~~~~~~~~~~~~~~~gv~~n~r~~~~~~~~i 460 (617)
+.++.+..++..+....+||.+| ++.+|.
T Consensus 382 ~~~~kk~d~~~~~~~~segVLAn-----FFNSLL 410 (472)
T PF05783_consen 382 QSSSKKPDPNVKGGSPSEGVLAN-----FFNSLL 410 (472)
T ss_pred cccccCCCCCCCCCccchHHHHH-----HHHHHh
Confidence 33333333333222233444333 455554
No 168
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.71 E-value=7.1e-17 Score=177.19 Aligned_cols=148 Identities=20% Similarity=0.202 Sum_probs=107.6
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCC-CccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~-~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
.++|+++|. +|||||||+|+|++.... ....+....++....+.+++ ..+.+|||
T Consensus 215 ~~kV~ivG~----------------------~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT 270 (449)
T PRK05291 215 GLKVVIAGR----------------------PNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDT 270 (449)
T ss_pred CCEEEEECC----------------------CCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeC
Confidence 468999999 999999999999987631 12222223334444555544 56899999
Q ss_pred CCccccccc--------chhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHH
Q psy3029 163 AGQERFRSM--------APMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEA 234 (617)
Q Consensus 163 ~G~e~~~~~--------~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~ 234 (617)
+|..++... ...++.++|++|+|||++++.++.....|.. ...+|+++|+||+|+.......
T Consensus 271 ~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~---- 340 (449)
T PRK05291 271 AGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE---- 340 (449)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh----
Confidence 998655432 2346789999999999999888776544433 2347999999999996533211
Q ss_pred HHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 235 ~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
...+.+++++||++|.|+++++++|.+.+..
T Consensus 341 ----~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 341 ----EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred ----hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 3345689999999999999999999887753
No 169
>PRK00089 era GTPase Era; Reviewed
Probab=99.70 E-value=8.2e-17 Score=167.55 Aligned_cols=160 Identities=19% Similarity=0.179 Sum_probs=104.6
Q ss_pred CCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccccc--------ccchhh
Q psy3029 104 VPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFR--------SMAPMY 175 (617)
Q Consensus 104 ~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~--------~~~~~~ 175 (617)
+++++++++|.+|||||||+|+|++.+.. ...+.+..+..............+.+|||||..... ......
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~-~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKIS-IVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCcee-ecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 45666777777999999999999988753 233333333222222222234789999999974432 223345
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC-CeEEEEcCCCCC
Q psy3029 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG-GTYYETSALQDQ 254 (617)
Q Consensus 176 ~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g-~~~~evSAktg~ 254 (617)
+..+|++++|+|+++..+ ....++..... ....|+++|+||+|+........+....+....+ .+++++||+++.
T Consensus 82 ~~~~D~il~vvd~~~~~~--~~~~~i~~~l~--~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIG--PGDEFILEKLK--KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred HhcCCEEEEEEeCCCCCC--hhHHHHHHHHh--hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 779999999999988322 22223222222 2246999999999997432222333444544444 489999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy3029 255 GIEDVFLNVSKGLI 268 (617)
Q Consensus 255 gI~eLf~~I~~~l~ 268 (617)
|+++++++|...+.
T Consensus 158 gv~~L~~~L~~~l~ 171 (292)
T PRK00089 158 NVDELLDVIAKYLP 171 (292)
T ss_pred CHHHHHHHHHHhCC
Confidence 99999999988763
No 170
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.70 E-value=3.7e-16 Score=152.28 Aligned_cols=155 Identities=20% Similarity=0.236 Sum_probs=109.0
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...++|+++|. +|||||||+++|++.++...+.+++|.+........ ...+.|||
T Consensus 22 ~~~~~v~ivG~----------------------~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~D 76 (196)
T PRK00454 22 DDGPEIAFAGR----------------------SNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVD 76 (196)
T ss_pred CCCCEEEEEcC----------------------CCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeC
Confidence 34568999999 999999999999998777777788886654433332 36799999
Q ss_pred cCCc----------ccccccchhhhccC---CEEEEEEeCCChhhHHH--HHHHHHHHHhcCCCCCeEEEEEECCCCCCc
Q psy3029 162 TAGQ----------ERFRSMAPMYYRNA---NAALLVFDITQYHSFAA--IKTWVKELKRNVDEPLVLCVVGNKTDLESS 226 (617)
Q Consensus 162 t~G~----------e~~~~~~~~~~~~a---d~iIlV~Dis~~~S~~~--l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~ 226 (617)
|+|. +++..+...+++.+ +++++|+|.+++.+... +.+|+ .. ..+|+++|+||+|+...
T Consensus 77 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l---~~---~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 77 LPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWL---KE---YGIPVLIVLTKADKLKK 150 (196)
T ss_pred CCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHH---HH---cCCcEEEEEECcccCCH
Confidence 9995 33444555666644 67888999877644332 22333 22 24689999999998654
Q ss_pred cccC--HHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 227 REVN--REEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 227 ~~v~--~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
.+.. .+++..+......+++++||+++.|++++++.|.+.+
T Consensus 151 ~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 151 GERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 3211 1223344443457899999999999999999987765
No 171
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.70 E-value=1.4e-16 Score=155.30 Aligned_cols=150 Identities=19% Similarity=0.139 Sum_probs=95.2
Q ss_pred CCCCHHHHHHHHHcC----CCCCcc-----CCCcceeEEEEEEE----------ECCeEEEEEEEecCCcccccccchhh
Q psy3029 115 LGVGKTSMVVRYIGK----MFSHHI-----SPTIGASFFTAKIN----------VGENKVKLQVWDTAGQERFRSMAPMY 175 (617)
Q Consensus 115 ~nVGKSSLinrl~~~----~~~~~~-----~~t~g~~~~~~~i~----------~~~~~~~l~i~Dt~G~e~~~~~~~~~ 175 (617)
+|||||||+++|+.. .+...+ ..|++..+....+. ..+..+.+.+|||||+..+.......
T Consensus 9 ~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 88 (192)
T cd01889 9 VDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTIIGG 88 (192)
T ss_pred CCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHHHHH
Confidence 999999999999872 111111 13444443333332 12336789999999986553333334
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccc--cCHHHHHHHHH-------hcCCeEE
Q psy3029 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSRE--VNREEAFHYSK-------SIGGTYY 246 (617)
Q Consensus 176 ~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~--v~~~e~~~~~~-------~~g~~~~ 246 (617)
...+|++++|+|+++.........|. . .... .+|+++|+||+|+..... ...++..+... ..+++++
T Consensus 89 ~~~~d~vi~VvD~~~~~~~~~~~~~~-~-~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi 164 (192)
T cd01889 89 AQIIDLMLLVVDATKGIQTQTAECLV-I-GEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPII 164 (192)
T ss_pred HhhCCEEEEEEECCCCccHHHHHHHH-H-HHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEE
Confidence 55789999999998755444333222 1 1212 369999999999864322 11222222111 1356899
Q ss_pred EEcCCCCCCHHHHHHHHHHHHH
Q psy3029 247 ETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 247 evSAktg~gI~eLf~~I~~~l~ 268 (617)
++||++|.|+++|+++|..++.
T Consensus 165 ~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 165 PVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred EEeccCCCCHHHHHHHHHhccc
Confidence 9999999999999999988774
No 172
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.70 E-value=1.3e-16 Score=168.73 Aligned_cols=159 Identities=23% Similarity=0.254 Sum_probs=116.8
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
.+||+|+|+ ||||||||+|+|++.. .....+..|.+++.....+..+..++.++||+
T Consensus 178 ~ikiaiiGr----------------------PNvGKSsLiN~ilgee-R~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTA 234 (444)
T COG1160 178 PIKIAIIGR----------------------PNVGKSSLINAILGEE-RVIVSDIAGTTRDSIDIEFERDGRKYVLIDTA 234 (444)
T ss_pred ceEEEEEeC----------------------CCCCchHHHHHhccCc-eEEecCCCCccccceeeeEEECCeEEEEEECC
Confidence 469999999 9999999999999887 56778888999988888877666788999999
Q ss_pred Ccc----------cccc-cchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHH
Q psy3029 164 GQE----------RFRS-MAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNRE 232 (617)
Q Consensus 164 G~e----------~~~~-~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~ 232 (617)
|.. .|.- -....+..+|++++|+|++.+.+-++.. ....+.+ ...+++||.||+|+.++.....+
T Consensus 235 GiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~ 310 (444)
T COG1160 235 GIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-IAGLIEE---AGRGIVIVVNKWDLVEEDEATME 310 (444)
T ss_pred CCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH---cCCCeEEEEEccccCCchhhHHH
Confidence 963 2221 1234577899999999999876544422 2233333 33589999999999765433333
Q ss_pred HHHHH----HHhc-CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 233 EAFHY----SKSI-GGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 233 e~~~~----~~~~-g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
+.... .... ..+++.+||++|.|++++|+.+......
T Consensus 311 ~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 311 EFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred HHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHH
Confidence 33221 1122 2489999999999999999998775544
No 173
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.70 E-value=2.4e-16 Score=151.94 Aligned_cols=152 Identities=18% Similarity=0.144 Sum_probs=104.2
Q ss_pred CCCCCCCHHHHHHHHHcCCCCCccCCCc--------------ceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhc
Q psy3029 112 WFWLGVGKTSMVVRYIGKMFSHHISPTI--------------GASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYR 177 (617)
Q Consensus 112 ~G~~nVGKSSLinrl~~~~~~~~~~~t~--------------g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~ 177 (617)
+|.+|+|||||+|+|++.........+. +.+.......+......+.+|||+|+..+...+..++.
T Consensus 5 ~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~ 84 (189)
T cd00881 5 AGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLS 84 (189)
T ss_pred EeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHH
Confidence 3339999999999999876543331111 12222212222223568999999999988888888999
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccC--HHHHHHHHHh--------------c
Q psy3029 178 NANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVN--REEAFHYSKS--------------I 241 (617)
Q Consensus 178 ~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~--~~e~~~~~~~--------------~ 241 (617)
.+|++++|+|+.++.+... .+++..+.. ...|+++|+||+|+..+.... .+...+.... .
T Consensus 85 ~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T cd00881 85 VSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGL 160 (189)
T ss_pred hcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCC
Confidence 9999999999988664432 334444443 347999999999997532211 2223333332 3
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
..+++++||++|.|+++++++|.+.+
T Consensus 161 ~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 161 LVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred cceEEEEecccCcCHHHHHHHHHhhC
Confidence 46899999999999999999998765
No 174
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.69 E-value=5e-16 Score=167.88 Aligned_cols=154 Identities=18% Similarity=0.171 Sum_probs=106.9
Q ss_pred ccCCCCCCCCHHHHHHHHHcCCCCC-cc-CCCcceeEEEEEEEECCeEEEEEEEecCCccc----ccccchhhh---ccC
Q psy3029 109 EANWFWLGVGKTSMVVRYIGKMFSH-HI-SPTIGASFFTAKINVGENKVKLQVWDTAGQER----FRSMAPMYY---RNA 179 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~~~~~~-~~-~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~----~~~~~~~~~---~~a 179 (617)
++|+|+||||||||+++|++.+... .+ ..|....+. .+.+. ....|.+||+||... ...+...|+ +.+
T Consensus 161 VglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG--~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 161 VGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLG--VVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred EEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEE--EEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 3444449999999999999876321 11 112222211 12222 145799999999743 223444444 469
Q ss_pred CEEEEEEeCCCh---hhHHHHHHHHHHHHhcCC--CCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy3029 180 NAALLVFDITQY---HSFAAIKTWVKELKRNVD--EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQ 254 (617)
Q Consensus 180 d~iIlV~Dis~~---~S~~~l~~~l~~i~~~~~--~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~ 254 (617)
+++|+|+|+++. .+++.+..|..++..+.. ..+|++||+||+|+... .+....+++.++.+++++||+++.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence 999999999864 567777778888776543 35799999999998431 234556666677889999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy3029 255 GIEDVFLNVSKGLIC 269 (617)
Q Consensus 255 gI~eLf~~I~~~l~~ 269 (617)
|+++|+++|.+.+..
T Consensus 314 GI~eL~~~L~~~l~~ 328 (424)
T PRK12297 314 GLDELLYAVAELLEE 328 (424)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999887754
No 175
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.69 E-value=3.1e-16 Score=177.09 Aligned_cols=147 Identities=20% Similarity=0.222 Sum_probs=111.1
Q ss_pred CCCCHHHHHHHHHcC-------CCCCccCC------CcceeEEEEEEEE-----CCeEEEEEEEecCCcccccccchhhh
Q psy3029 115 LGVGKTSMVVRYIGK-------MFSHHISP------TIGASFFTAKINV-----GENKVKLQVWDTAGQERFRSMAPMYY 176 (617)
Q Consensus 115 ~nVGKSSLinrl~~~-------~~~~~~~~------t~g~~~~~~~i~~-----~~~~~~l~i~Dt~G~e~~~~~~~~~~ 176 (617)
.++|||||+++|+.. .+...+.+ ..|.++....+.+ ++..+.+.||||||+.+|...+..++
T Consensus 12 ~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v~~~l 91 (595)
T TIGR01393 12 IDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSL 91 (595)
T ss_pred CCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHHHHHH
Confidence 999999999999864 12223333 3477776655444 45678999999999999998899999
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC---eEEEEcCCCC
Q psy3029 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG---TYYETSALQD 253 (617)
Q Consensus 177 ~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~---~~~evSAktg 253 (617)
+.+|++|+|+|+++..+++.+..|...+. .++|+++|+||+|+.... ..+...++...+++ .++++||++|
T Consensus 92 ~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~vi~vSAktG 165 (595)
T TIGR01393 92 AACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASEAILASAKTG 165 (595)
T ss_pred HhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcceEEEeeccCC
Confidence 99999999999999777776666654432 247999999999986422 12223445555665 4899999999
Q ss_pred CCHHHHHHHHHHHH
Q psy3029 254 QGIEDVFLNVSKGL 267 (617)
Q Consensus 254 ~gI~eLf~~I~~~l 267 (617)
.||+++|+.|.+.+
T Consensus 166 ~GI~~Lle~I~~~l 179 (595)
T TIGR01393 166 IGIEEILEAIVKRV 179 (595)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999998765
No 176
>PRK11058 GTPase HflX; Provisional
Probab=99.69 E-value=3.9e-16 Score=169.59 Aligned_cols=149 Identities=18% Similarity=0.091 Sum_probs=100.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccc--cccch------hhhccCCEEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERF--RSMAP------MYYRNANAALLVF 186 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~--~~~~~------~~~~~ad~iIlV~ 186 (617)
+|||||||+|+|++.++.....+....+.....+.+.+. ..+.+|||+|..+. ..++. ..+.++|++|+|+
T Consensus 206 ~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~Vv 284 (426)
T PRK11058 206 TNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVV 284 (426)
T ss_pred CCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 999999999999987653222222233333444444442 25789999998432 12222 3367899999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCe-EEEEcCCCCCCHHHHHHHHHH
Q psy3029 187 DITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGT-YYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 187 Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~-~~evSAktg~gI~eLf~~I~~ 265 (617)
|++++.++..+..|...+......++|+++|+||+|+..... ... .. ...+++ ++++||++|.|+++|+++|.+
T Consensus 285 DaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~-~~-~~~~~~~~v~ISAktG~GIdeL~e~I~~ 359 (426)
T PRK11058 285 DAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRI-DR-DEENKPIRVWLSAQTGAGIPLLFQALTE 359 (426)
T ss_pred eCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHH-HH-HhcCCCceEEEeCCCCCCHHHHHHHHHH
Confidence 999988877775554444443334579999999999864211 111 11 123555 588999999999999999998
Q ss_pred HHHH
Q psy3029 266 GLIC 269 (617)
Q Consensus 266 ~l~~ 269 (617)
.+..
T Consensus 360 ~l~~ 363 (426)
T PRK11058 360 RLSG 363 (426)
T ss_pred Hhhh
Confidence 7743
No 177
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.69 E-value=2.7e-16 Score=151.58 Aligned_cols=148 Identities=16% Similarity=0.197 Sum_probs=102.3
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
+...++|+|+|+ +|||||||+|+|++..+...+.+++|.+.....+..++ .+.+|
T Consensus 15 ~~~~~~i~ivG~----------------------~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~li 69 (179)
T TIGR03598 15 PDDGPEIAFAGR----------------------SNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLV 69 (179)
T ss_pred CCCCCEEEEEcC----------------------CCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEE
Confidence 355678999999 99999999999999876666677777665544444332 58999
Q ss_pred ecCCcc----------cccccchhhhcc---CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcc
Q psy3029 161 DTAGQE----------RFRSMAPMYYRN---ANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSR 227 (617)
Q Consensus 161 Dt~G~e----------~~~~~~~~~~~~---ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~ 227 (617)
||+|.. .+..+...|++. ++++|+|+|++++.+.... .++..+.. ..+|+++|+||+|+....
T Consensus 70 DtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~ 145 (179)
T TIGR03598 70 DLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKS 145 (179)
T ss_pred eCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHH
Confidence 999952 334444556653 5799999999886554443 22333332 347999999999986432
Q ss_pred c--cCHHHHHHHHHhcC--CeEEEEcCCCCCCHH
Q psy3029 228 E--VNREEAFHYSKSIG--GTYYETSALQDQGIE 257 (617)
Q Consensus 228 ~--v~~~e~~~~~~~~g--~~~~evSAktg~gI~ 257 (617)
+ ...+++.+.+...+ ..+|++||++|+|++
T Consensus 146 ~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 146 ELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 2 12344445555544 479999999999974
No 178
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.69 E-value=5.6e-16 Score=169.93 Aligned_cols=149 Identities=23% Similarity=0.209 Sum_probs=98.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccc-----------hhhhccCCEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMA-----------PMYYRNANAAL 183 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~-----------~~~~~~ad~iI 183 (617)
+|||||||+|+|++.... ...+..|.+.......+......+.+|||+|..++.... ..+++.+|++|
T Consensus 181 ~~~GKSsLin~l~~~~~~-~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i 259 (429)
T TIGR03594 181 PNVGKSTLVNALLGEERV-IVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVL 259 (429)
T ss_pred CCCCHHHHHHHHHCCCee-ecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEE
Confidence 999999999999986532 222333444333332322223478999999975543221 24678999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHH-HHHHh----cCCeEEEEcCCCCCCHHH
Q psy3029 184 LVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF-HYSKS----IGGTYYETSALQDQGIED 258 (617)
Q Consensus 184 lV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~-~~~~~----~g~~~~evSAktg~gI~e 258 (617)
+|+|++++.+..+.. ++..+.. ..+|+++|+||+|+..... ..++.. .+... .+++++++||++|.|+++
T Consensus 260 lV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~ 334 (429)
T TIGR03594 260 LVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDEK-TREEFKKELRRKLPFLDFAPIVFISALTGQGVDK 334 (429)
T ss_pred EEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCHH-HHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHH
Confidence 999999887766543 3444433 3479999999999972111 111221 11112 246899999999999999
Q ss_pred HHHHHHHHHHH
Q psy3029 259 VFLNVSKGLIC 269 (617)
Q Consensus 259 Lf~~I~~~l~~ 269 (617)
+|+++.+.+..
T Consensus 335 l~~~i~~~~~~ 345 (429)
T TIGR03594 335 LLDAIDEVYEN 345 (429)
T ss_pred HHHHHHHHHHH
Confidence 99999886644
No 179
>KOG0096|consensus
Probab=99.68 E-value=7.5e-17 Score=150.52 Aligned_cols=161 Identities=27% Similarity=0.533 Sum_probs=140.3
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
.+|++++|+ .|.|||++++|.+.+.|...+.+|+|++.......-+.+.++|..|||+
T Consensus 10 ~fklvlvGd----------------------gg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdta 67 (216)
T KOG0096|consen 10 TFKLVLVGD----------------------GGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTA 67 (216)
T ss_pred eEEEEEecC----------------------CcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecc
Confidence 468889999 9999999999999999999999999999877666555567999999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG 243 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~ 243 (617)
|+|.+..+...|+-...+.|++||++.+-++.++.+|-..+.+.+.. +||+++|||.|... +++ ..+...+-+..++
T Consensus 68 gqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N-iPiv~cGNKvDi~~-r~~-k~k~v~~~rkknl 144 (216)
T KOG0096|consen 68 GQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN-IPIVLCGNKVDIKA-RKV-KAKPVSFHRKKNL 144 (216)
T ss_pred cceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC-CCeeeeccceeccc-ccc-ccccceeeecccc
Confidence 99999999999999999999999999999999999999999887755 99999999999754 322 2233456677788
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 244 TYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 244 ~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
.++++||+++.|.+.-|-++.+++..
T Consensus 145 ~y~~iSaksn~NfekPFl~LarKl~G 170 (216)
T KOG0096|consen 145 QYYEISAKSNYNFERPFLWLARKLTG 170 (216)
T ss_pred eeEEeecccccccccchHHHhhhhcC
Confidence 99999999999999999999988754
No 180
>KOG4423|consensus
Probab=99.67 E-value=3.5e-18 Score=158.68 Aligned_cols=157 Identities=33% Similarity=0.578 Sum_probs=136.7
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCe-EEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhh
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGEN-KVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHS 193 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~-~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S 193 (617)
-+||||+++.+++...|...|..|+|++|..+.+..+.+ .+++++||++|++++..|.+.|++.+.+.++|||++...+
T Consensus 34 ~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~t 113 (229)
T KOG4423|consen 34 LGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLT 113 (229)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEcccccc
Confidence 999999999999999999999999999998888877654 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC----CCCCeEEEEEECCCCCCccccC-HHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 194 FAAIKTWVKELKRNV----DEPLVLCVVGNKTDLESSREVN-REEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 194 ~~~l~~~l~~i~~~~----~~~iPvIlVgNK~DL~~~~~v~-~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~~l 267 (617)
|+...+|...+.... ..++|+++.+||||........ .....++++++|+ ..+++|+|.+.+++|+-..+++.+
T Consensus 114 fe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 114 FEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKI 193 (229)
T ss_pred ccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHH
Confidence 999999999976543 2468899999999986432222 3556688888988 799999999999999999999988
Q ss_pred HHhh
Q psy3029 268 ICLS 271 (617)
Q Consensus 268 ~~~~ 271 (617)
....
T Consensus 194 lvnd 197 (229)
T KOG4423|consen 194 LVND 197 (229)
T ss_pred Hhhc
Confidence 7654
No 181
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.67 E-value=1.5e-15 Score=143.66 Aligned_cols=145 Identities=22% Similarity=0.179 Sum_probs=92.9
Q ss_pred CCCCHHHHHHHHHcCCCCC-ccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccc-----------cchhhhccCCEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSH-HISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRS-----------MAPMYYRNANAA 182 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~-~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~-----------~~~~~~~~ad~i 182 (617)
+|+|||||+++|++..... ...+..........+..++ ..+.+|||+|..+... ....++..+|++
T Consensus 11 ~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~v 88 (174)
T cd01895 11 PNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVV 88 (174)
T ss_pred CCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeE
Confidence 9999999999999865321 1112222222223333343 3578999999743311 012346789999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHH-HHHHhc----CCeEEEEcCCCCCCHH
Q psy3029 183 LLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF-HYSKSI----GGTYYETSALQDQGIE 257 (617)
Q Consensus 183 IlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~-~~~~~~----g~~~~evSAktg~gI~ 257 (617)
++|+|+.++.+.... .++..+.. ...|+++|+||+|+........++.. .+...+ ..+++++||+++.|++
T Consensus 89 i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 164 (174)
T cd01895 89 LLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVD 164 (174)
T ss_pred EEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHH
Confidence 999999988775543 23333332 23699999999998754322222222 222333 3589999999999999
Q ss_pred HHHHHHHH
Q psy3029 258 DVFLNVSK 265 (617)
Q Consensus 258 eLf~~I~~ 265 (617)
++++.+.+
T Consensus 165 ~~~~~l~~ 172 (174)
T cd01895 165 KLFDAIDE 172 (174)
T ss_pred HHHHHHHH
Confidence 99998865
No 182
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.4e-15 Score=145.56 Aligned_cols=154 Identities=18% Similarity=0.218 Sum_probs=113.0
Q ss_pred eEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCC
Q psy3029 85 IKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAG 164 (617)
Q Consensus 85 ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G 164 (617)
..|+++|+ +|||||||||+|++.+-.+....|+|.+.....+.+++. +.++|.||
T Consensus 25 ~EIaF~GR----------------------SNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPG 79 (200)
T COG0218 25 PEIAFAGR----------------------SNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPG 79 (200)
T ss_pred cEEEEEcc----------------------CcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCC
Confidence 38999999 999999999999998877889999998876666655554 88999999
Q ss_pred c----------ccccccchhhhc---cCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCH
Q psy3029 165 Q----------ERFRSMAPMYYR---NANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNR 231 (617)
Q Consensus 165 ~----------e~~~~~~~~~~~---~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~ 231 (617)
. +.+..++..|++ +..++++++|+.++..-.+. +.+..+.+ ..+|++||+||+|.....+...
T Consensus 80 YGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k 155 (200)
T COG0218 80 YGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERNK 155 (200)
T ss_pred cccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHHH
Confidence 6 456667777776 46788999999887543332 22333332 3479999999999876543221
Q ss_pred HHHHHHHHhcC----Ce--EEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 232 EEAFHYSKSIG----GT--YYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 232 ~e~~~~~~~~g----~~--~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
.....++.+. .. ++.+|+.++.|++++...|...+.
T Consensus 156 -~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 156 -QLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred -HHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 1223333332 22 788999999999999999887664
No 183
>KOG0071|consensus
Probab=99.66 E-value=1.5e-15 Score=134.96 Aligned_cols=156 Identities=20% Similarity=0.309 Sum_probs=124.0
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
+.++|+++|- .++||||++.+|+-+. .....||+|..+.+..+ ++++|++||.
T Consensus 16 KE~~ilmlGL----------------------d~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVty----kN~kfNvwdv 68 (180)
T KOG0071|consen 16 KEMRILMLGL----------------------DAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDV 68 (180)
T ss_pred ccceEEEEec----------------------ccCCceehhhHHhcCC-CcccccccceeEEEEEe----eeeEEeeeec
Confidence 3568888888 9999999999999877 56777999977666555 7899999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhc-CCCCCeEEEEEECCCCCCccccCHHHHHHHHHh-
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRN-VDEPLVLCVVGNKTDLESSREVNREEAFHYSKS- 240 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~-~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~- 240 (617)
+|+++.+.+|+.|+....++|||+|..+....++...-+..+... .-...|++|.+||.|+.... ..+++..+...
T Consensus 69 GGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe 146 (180)
T KOG0071|consen 69 GGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELE 146 (180)
T ss_pred cCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccc
Confidence 999999999999999999999999999887777776555544332 22458999999999997543 35555554432
Q ss_pred ----cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 241 ----IGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 241 ----~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
....+..+||.+|.|+.+-|.+|...+
T Consensus 147 ~~r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 147 RIRDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred cccCCccEeeccccccchhHHHHHHHHHhhc
Confidence 223578899999999999999987654
No 184
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.66 E-value=1.5e-15 Score=142.21 Aligned_cols=146 Identities=17% Similarity=0.169 Sum_probs=94.3
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccc--------cchhhhccCCEEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRS--------MAPMYYRNANAALLVF 186 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~--------~~~~~~~~ad~iIlV~ 186 (617)
+|+|||||+++|++....... +....+..............+.+|||+|...... .....+..+|++++|+
T Consensus 12 ~g~GKttl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~ 90 (168)
T cd04163 12 PNVGKSTLLNALVGQKISIVS-PKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVV 90 (168)
T ss_pred CCCCHHHHHHHHhCCceEecc-CCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 999999999999987642221 1111222222222333456789999999754322 2344577899999999
Q ss_pred eCCChhhHHHHHH-HHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC-CeEEEEcCCCCCCHHHHHHHHH
Q psy3029 187 DITQYHSFAAIKT-WVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG-GTYYETSALQDQGIEDVFLNVS 264 (617)
Q Consensus 187 Dis~~~S~~~l~~-~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g-~~~~evSAktg~gI~eLf~~I~ 264 (617)
|++++. ..... ++..+.. ...|+++|+||+|+........+....+..... .+++++|++++.|++++++.|.
T Consensus 91 d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~ 165 (168)
T cd04163 91 DASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIV 165 (168)
T ss_pred ECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHH
Confidence 999872 22222 2333332 236999999999986433222333334444443 5899999999999999999987
Q ss_pred HH
Q psy3029 265 KG 266 (617)
Q Consensus 265 ~~ 266 (617)
+.
T Consensus 166 ~~ 167 (168)
T cd04163 166 KY 167 (168)
T ss_pred hh
Confidence 64
No 185
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.66 E-value=2.4e-15 Score=164.57 Aligned_cols=159 Identities=16% Similarity=0.090 Sum_probs=103.0
Q ss_pred ccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccc----cccc---hhhhccCCE
Q psy3029 109 EANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERF----RSMA---PMYYRNANA 181 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~----~~~~---~~~~~~ad~ 181 (617)
++|+|+||||||||+|+|++.+... ...++.+.......+......|.||||||.... ..+. -.+++++|+
T Consensus 162 V~LVG~PNAGKSTLln~Ls~akpkI--adypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradv 239 (500)
T PRK12296 162 VGLVGFPSAGKSSLISALSAAKPKI--ADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAV 239 (500)
T ss_pred EEEEEcCCCCHHHHHHHHhcCCccc--cccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCE
Confidence 4445559999999999999875422 122222222222222223467999999996321 1111 224568999
Q ss_pred EEEEEeCCCh----hhHHHHHHHHHHHHhcCC-----------CCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEE
Q psy3029 182 ALLVFDITQY----HSFAAIKTWVKELKRNVD-----------EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYY 246 (617)
Q Consensus 182 iIlV~Dis~~----~S~~~l~~~l~~i~~~~~-----------~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~ 246 (617)
+|+|+|+++. ..+.++..|..++..+.. ...|+|||+||+|+.+.... .+.....+...+++++
T Consensus 240 Lv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~Vf 318 (500)
T PRK12296 240 LVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGWPVF 318 (500)
T ss_pred EEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCCeEE
Confidence 9999999753 345555555555544321 24799999999999654332 1222333445578999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 247 ETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 247 evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
+|||+++.|+++|+.+|.+.+...
T Consensus 319 ~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 319 EVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999998887553
No 186
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.66 E-value=9e-16 Score=173.42 Aligned_cols=146 Identities=16% Similarity=0.144 Sum_probs=105.2
Q ss_pred CCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccccccc------chhhhc--cCCEEEE
Q psy3029 113 FWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSM------APMYYR--NANAALL 184 (617)
Q Consensus 113 G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~------~~~~~~--~ad~iIl 184 (617)
|.+|||||||+|+|++..+.....++..++.....+..++ ..+++|||||++++... .+.++. .+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 5699999999999998875434444444444444444444 46899999999876543 344443 7999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHH
Q psy3029 185 VFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVS 264 (617)
Q Consensus 185 V~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~ 264 (617)
|+|.++.+. ...+..++.+ .++|+++|+||+|+.+++.+. .+...+.+.++++++++||++|.|++++++.+.
T Consensus 79 VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchh---hHHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999987432 1223333332 357999999999986554443 345678888999999999999999999999998
Q ss_pred HHH
Q psy3029 265 KGL 267 (617)
Q Consensus 265 ~~l 267 (617)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 753
No 187
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.65 E-value=1.3e-15 Score=163.71 Aligned_cols=158 Identities=16% Similarity=0.119 Sum_probs=106.3
Q ss_pred ccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEEC-CeEEEEEEEecCCcccccc----c---chhhhccCC
Q psy3029 109 EANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG-ENKVKLQVWDTAGQERFRS----M---APMYYRNAN 180 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~-~~~~~l~i~Dt~G~e~~~~----~---~~~~~~~ad 180 (617)
++|+|+||||||||+|+|++.+. ...+.++.++......+. .....+.|+||||..+-.. + .-.+++.+|
T Consensus 162 ValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 162 VGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred EEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 44555599999999999998764 222222333222222221 1234689999999753211 1 123577899
Q ss_pred EEEEEEeCC---ChhhHHHHHHHHHHHHhcCC--CCCeEEEEEECCCCCCccccCHHHHHHHHHhcC--CeEEEEcCCCC
Q psy3029 181 AALLVFDIT---QYHSFAAIKTWVKELKRNVD--EPLVLCVVGNKTDLESSREVNREEAFHYSKSIG--GTYYETSALQD 253 (617)
Q Consensus 181 ~iIlV~Dis---~~~S~~~l~~~l~~i~~~~~--~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g--~~~~evSAktg 253 (617)
++|+|+|++ ....+..+..|+.++..+.. ...|++||+||+|+.....+ .+....+.+.++ .+++.+||+++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence 999999998 44567777778887776532 24699999999998654332 233444555444 37899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy3029 254 QGIEDVFLNVSKGLIC 269 (617)
Q Consensus 254 ~gI~eLf~~I~~~l~~ 269 (617)
.||++|++.|.+.+..
T Consensus 319 ~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 319 LGVKELCWDLMTFIEE 334 (390)
T ss_pred cCHHHHHHHHHHHhhh
Confidence 9999999999887754
No 188
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.64 E-value=3.6e-15 Score=137.91 Aligned_cols=151 Identities=19% Similarity=0.159 Sum_probs=100.5
Q ss_pred CCCCCCCCHHHHHHHHHcCCCC-CccCCCcceeEEEEEEEECCeEEEEEEEecCCccccccc-------chhhhccCCEE
Q psy3029 111 NWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSM-------APMYYRNANAA 182 (617)
Q Consensus 111 i~G~~nVGKSSLinrl~~~~~~-~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~-------~~~~~~~ad~i 182 (617)
|+|.+|+|||||+++|++.... ....+.............. ....+.+||++|...+... ...++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 4677999999999999986543 1111211112222222222 1467999999998765433 34478899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHH---HHHHHHHhcCCeEEEEcCCCCCCHHHH
Q psy3029 183 LLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNRE---EAFHYSKSIGGTYYETSALQDQGIEDV 259 (617)
Q Consensus 183 IlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~---e~~~~~~~~g~~~~evSAktg~gI~eL 259 (617)
++|+|..+..+..... |+..... ...|+++|+||+|+......... .........+.+++++||+++.|++++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999987665544 3333332 34799999999998754332211 112223334568999999999999999
Q ss_pred HHHHHHH
Q psy3029 260 FLNVSKG 266 (617)
Q Consensus 260 f~~I~~~ 266 (617)
+++|.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998764
No 189
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.64 E-value=3.4e-15 Score=167.99 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=109.0
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
.+..+|+++|. +++|||||+++|.+..+.....+.+..++....+.+.+. ..+.|||
T Consensus 85 ~r~p~V~I~Gh----------------------vd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iD 141 (587)
T TIGR00487 85 ERPPVVTIMGH----------------------VDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLD 141 (587)
T ss_pred cCCCEEEEECC----------------------CCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEE
Confidence 34468999999 999999999999988776554444444444444444332 2789999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
|||++.|..++..++..+|++|+|+|+++...-+.... +..+. ..++|+++++||+|+... ..++....+..+
T Consensus 142 TPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~-i~~~~---~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~ 214 (587)
T TIGR00487 142 TPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEA-ISHAK---AANVPIIVAINKIDKPEA---NPDRVKQELSEY 214 (587)
T ss_pred CCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHH-HHHHH---HcCCCEEEEEECcccccC---CHHHHHHHHHHh
Confidence 99999999998889999999999999987432222211 12222 234799999999998542 223333333222
Q ss_pred C---------CeEEEEcCCCCCCHHHHHHHHHH
Q psy3029 242 G---------GTYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 242 g---------~~~~evSAktg~gI~eLf~~I~~ 265 (617)
+ .+++++||++|.|+++++++|..
T Consensus 215 g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 215 GLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred hhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 2 47999999999999999999863
No 190
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.63 E-value=3.1e-15 Score=172.90 Aligned_cols=144 Identities=15% Similarity=0.165 Sum_probs=110.1
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccccccc----------chhhh--ccCCEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSM----------APMYY--RNANAA 182 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~----------~~~~~--~~ad~i 182 (617)
||||||||+|+|++.+. .+.+.+|.++..+...+.....++.+|||||...+... ...++ ..+|++
T Consensus 12 pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~v 89 (772)
T PRK09554 12 PNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLL 89 (772)
T ss_pred CCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEE
Confidence 99999999999998764 45566788887777777777788999999998765421 22343 379999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHH
Q psy3029 183 LLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLN 262 (617)
Q Consensus 183 IlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~ 262 (617)
++|+|.++.+.- ..|..++.+ .++|+++|+||+|+.+.+.+. ....++.+.+|++++++||++++|++++++.
T Consensus 90 I~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~ 162 (772)
T PRK09554 90 INVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTRGRGIEALKLA 162 (772)
T ss_pred EEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeecCCCHHHHHHH
Confidence 999999885432 234444444 347999999999987555443 3456778889999999999999999999999
Q ss_pred HHHHH
Q psy3029 263 VSKGL 267 (617)
Q Consensus 263 I~~~l 267 (617)
+.+..
T Consensus 163 I~~~~ 167 (772)
T PRK09554 163 IDRHQ 167 (772)
T ss_pred HHHhh
Confidence 87654
No 191
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.63 E-value=3.5e-15 Score=168.49 Aligned_cols=146 Identities=22% Similarity=0.182 Sum_probs=105.7
Q ss_pred CCCCCHHHHHHHHHcC---CCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCC
Q psy3029 114 WLGVGKTSMVVRYIGK---MFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQ 190 (617)
Q Consensus 114 ~~nVGKSSLinrl~~~---~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~ 190 (617)
.+++|||||+++|++. .+...+..++..++....+...+ ..+.|||+||+++|......++.++|++|+|+|+++
T Consensus 8 ~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~ 85 (581)
T TIGR00475 8 HVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADE 85 (581)
T ss_pred CCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC
Confidence 3999999999999963 33344445555555444454444 789999999999998877788899999999999988
Q ss_pred ---hhhHHHHHHHHHHHHhcCCCCCe-EEEEEECCCCCCcccc--CHHHHHHHHHhc----CCeEEEEcCCCCCCHHHHH
Q psy3029 191 ---YHSFAAIKTWVKELKRNVDEPLV-LCVVGNKTDLESSREV--NREEAFHYSKSI----GGTYYETSALQDQGIEDVF 260 (617)
Q Consensus 191 ---~~S~~~l~~~l~~i~~~~~~~iP-vIlVgNK~DL~~~~~v--~~~e~~~~~~~~----g~~~~evSAktg~gI~eLf 260 (617)
+.+++.+. .+.. .++| ++||+||+|+.++..+ ..+++..++... +++++++||++|.|+++++
T Consensus 86 G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~ 158 (581)
T TIGR00475 86 GVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELK 158 (581)
T ss_pred CCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHH
Confidence 34444332 2222 2356 9999999999754432 123444555544 4689999999999999999
Q ss_pred HHHHHHHH
Q psy3029 261 LNVSKGLI 268 (617)
Q Consensus 261 ~~I~~~l~ 268 (617)
+.|...+.
T Consensus 159 ~~L~~l~~ 166 (581)
T TIGR00475 159 KELKNLLE 166 (581)
T ss_pred HHHHHHHH
Confidence 98876654
No 192
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.62 E-value=3.7e-15 Score=146.90 Aligned_cols=107 Identities=18% Similarity=0.159 Sum_probs=76.0
Q ss_pred EEEEEEecCCcccccccchhhhccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcccc-
Q psy3029 155 VKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQY----HSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREV- 229 (617)
Q Consensus 155 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~----~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v- 229 (617)
..+.||||||+++|.......+.++|++|+|+|++++ .++..+. .+... ...|++||+||+|+......
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~----~~~~~--~~~~iiivvNK~Dl~~~~~~~ 156 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLA----ALEIM--GLKHIIIVQNKIDLVKEEQAL 156 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHH----HHHHc--CCCcEEEEEEchhccCHHHHH
Confidence 6789999999998877777777889999999999874 2233222 22221 11378999999999653221
Q ss_pred -CHHHHHHHHHhc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 230 -NREEAFHYSKSI---GGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 230 -~~~e~~~~~~~~---g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
..+++.+++..+ +++++++||++|.|+++|++.|.+.+
T Consensus 157 ~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 157 ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 112333444332 56899999999999999999998755
No 193
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.62 E-value=4.3e-15 Score=157.81 Aligned_cols=155 Identities=20% Similarity=0.219 Sum_probs=116.8
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+|+|+ ||||||||+|.|++.. .+.+.+-+|.+++..+..++-+.+.+.++||
T Consensus 216 ~G~kvvIiG~----------------------PNvGKSSLLNaL~~~d-~AIVTdI~GTTRDviee~i~i~G~pv~l~DT 272 (454)
T COG0486 216 EGLKVVIIGR----------------------PNVGKSSLLNALLGRD-RAIVTDIAGTTRDVIEEDINLNGIPVRLVDT 272 (454)
T ss_pred cCceEEEECC----------------------CCCcHHHHHHHHhcCC-ceEecCCCCCccceEEEEEEECCEEEEEEec
Confidence 3479999999 9999999999999887 6788888899988888887777789999999
Q ss_pred CCccccccc--------chhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHH
Q psy3029 163 AGQERFRSM--------APMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEA 234 (617)
Q Consensus 163 ~G~e~~~~~--------~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~ 234 (617)
+|..+-... ....+++||++++|+|.+.+.+-.+.. .+. ..+.+.|+++|.||+||..+....
T Consensus 273 AGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~-~~~----~~~~~~~~i~v~NK~DL~~~~~~~---- 343 (454)
T COG0486 273 AGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLA-LIE----LLPKKKPIIVVLNKADLVSKIELE---- 343 (454)
T ss_pred CCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHH-HHH----hcccCCCEEEEEechhcccccccc----
Confidence 997433222 345677999999999999863322211 111 234457999999999997643311
Q ss_pred HHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 235 ~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
.+....+.+++.+||++|.|++.|.+.|.+.+...
T Consensus 344 -~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 344 -SEKLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred -hhhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 11112344799999999999999999998877654
No 194
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=99.62 E-value=3e-16 Score=162.22 Aligned_cols=124 Identities=19% Similarity=0.200 Sum_probs=85.7
Q ss_pred CCEEEEEEeCCcEEEEEEeeecCC-ceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEecccccc---------
Q psy3029 461 GDKVTVYTVHGKQFEGYLKTFSKQ-FELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAKNVDLE--------- 530 (617)
Q Consensus 461 G~~v~v~~~~G~~y~Gi~~~~s~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~~v~~~--------- 530 (617)
|+.|.+++.||.. .+.-| .|||+..++.+.+... +...|+..+.- +..|.
T Consensus 34 GS~I~~~~Tn~~~------~~nlEsi~vv~~nprV~~~gVs-------------~s~sD~~t~~~-~~sl~~~~en~~s~ 93 (654)
T COG5180 34 GSIIGAFLTNEDG------KVNLESIDVVETNPRVVFPGVS-------------ISESDIITVTK-MNSLQAEKENDASE 93 (654)
T ss_pred cceeeeeeecCCc------cceeeeeeeeecCCccccCccc-------------cccchhhhhhc-cchhhhhhcccccc
Confidence 9999999999722 12211 6788888887754321 12222222210 11110
Q ss_pred --ccc-----cCcccchhhhcccCCCCCCcccccCcCCCC-------------CCCCCCcchhhhccccCCCCccCCccc
Q psy3029 531 --YAV-----RDTFATDTAISKFNGVIGERELEPWAEDML-------------GPGGDDDFELDQMCNHNVGTATSSIKM 590 (617)
Q Consensus 531 --~~~-----~~~f~TDt~IS~~n~~~~ereL~~W~p~~~-------------~~~~~d~f~~ne~~~~~~st~de~l~~ 590 (617)
.+. .--||||.+||+.-.+++||+|.||.|+.. ..-.||||++||.||||||+|||+|
T Consensus 94 ~gsa~~n~s~~rvfrTDv~ISg~~rE~keR~l~~w~p~p~aa~~~~~G~~le~d~~~WdQFa~NeKlFgVkS~FDE~l-- 171 (654)
T COG5180 94 RGSAAKNDSGWRVFRTDVEISGGPREIKERKLMPWAPLPKAADLEKSGKALEEDCKDWDQFAANEKLFGVKSRFDEEL-- 171 (654)
T ss_pred ccccccccccceeeeecceecCCcchhhhhhhcccCCCccccCCccccchhhcccchHHHhhhhhhhcCccccccHHH--
Confidence 011 125999999998667899999999999631 3346999999999999999999999
Q ss_pred cccccCC-CCCchHHHH
Q psy3029 591 FIFPLIQ-VAPYTMEES 606 (617)
Q Consensus 591 yt~~l~~-~~~~~~~~~ 606 (617)
||++||| +|-|+++++
T Consensus 172 Yt~~idks~p~Yk~k~q 188 (654)
T COG5180 172 YTEVIDKSSPSYKSKVQ 188 (654)
T ss_pred HhhhhccCChhhHHHHH
Confidence 9999999 666666654
No 195
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.61 E-value=9.5e-15 Score=160.53 Aligned_cols=149 Identities=21% Similarity=0.178 Sum_probs=98.7
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccccccc-----------chhhhccCCEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSM-----------APMYYRNANAAL 183 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~-----------~~~~~~~ad~iI 183 (617)
+|||||||+|+|++... ....+..|.++......+......+.+|||+|..+.... ...+++.+|++|
T Consensus 182 ~n~GKStlin~ll~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i 260 (435)
T PRK00093 182 PNVGKSSLINALLGEER-VIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVL 260 (435)
T ss_pred CCCCHHHHHHHHhCCCc-eeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEE
Confidence 99999999999997652 223344555555544444334456789999996432211 123677999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHH----hcCCeEEEEcCCCCCCHHHH
Q psy3029 184 LVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSK----SIGGTYYETSALQDQGIEDV 259 (617)
Q Consensus 184 lV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~----~~g~~~~evSAktg~gI~eL 259 (617)
+|+|++++.+..+.. ++..+.+ ...|++||+||+|+.++... .+....+.. ...++++++||++|.|++++
T Consensus 261 lViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l 335 (435)
T PRK00093 261 LVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVFISALTGQGVDKL 335 (435)
T ss_pred EEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEEEeCCCCCCHHHH
Confidence 999999887765543 3333333 23699999999998643211 111111111 12468999999999999999
Q ss_pred HHHHHHHHHH
Q psy3029 260 FLNVSKGLIC 269 (617)
Q Consensus 260 f~~I~~~l~~ 269 (617)
++.+.+....
T Consensus 336 ~~~i~~~~~~ 345 (435)
T PRK00093 336 LEAIDEAYEN 345 (435)
T ss_pred HHHHHHHHHH
Confidence 9998876543
No 196
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.61 E-value=9e-15 Score=144.14 Aligned_cols=110 Identities=15% Similarity=0.293 Sum_probs=82.9
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccC-CEEEEEEeCCCh-h
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNA-NAALLVFDITQY-H 192 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a-d~iIlV~Dis~~-~ 192 (617)
+|||||||+++|..+.+...+.++ .................+.+||+||++++...+..+++.+ +++|+|+|+.+. .
T Consensus 9 ~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~ 87 (203)
T cd04105 9 SDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQK 87 (203)
T ss_pred CCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchh
Confidence 999999999999998876554433 2222222222223457899999999999988888899998 999999999997 6
Q ss_pred hHHHHHHHHHHHHhc---CCCCCeEEEEEECCCCCC
Q psy3029 193 SFAAIKTWVKELKRN---VDEPLVLCVVGNKTDLES 225 (617)
Q Consensus 193 S~~~l~~~l~~i~~~---~~~~iPvIlVgNK~DL~~ 225 (617)
++..+..|+..+... ....+|++||+||+|+..
T Consensus 88 ~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 88 NLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 777777776655332 224689999999999864
No 197
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.59 E-value=1.5e-14 Score=135.87 Aligned_cols=143 Identities=23% Similarity=0.266 Sum_probs=97.6
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccc----------ccccchhhhc---cCCE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQER----------FRSMAPMYYR---NANA 181 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~----------~~~~~~~~~~---~ad~ 181 (617)
+|+|||||+++|++..+.....++++.+.....+..+. .+.+|||+|... +..+...|+. ++++
T Consensus 8 ~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (170)
T cd01876 8 SNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKG 84 (170)
T ss_pred CCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhE
Confidence 99999999999997766677777777766555544443 789999999532 3344444554 4678
Q ss_pred EEEEEeCCChhh--HHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccC--HHHHHHHHH--hcCCeEEEEcCCCCCC
Q psy3029 182 ALLVFDITQYHS--FAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVN--REEAFHYSK--SIGGTYYETSALQDQG 255 (617)
Q Consensus 182 iIlV~Dis~~~S--~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~--~~e~~~~~~--~~g~~~~evSAktg~g 255 (617)
+++++|.....+ ...+.+|+... ..|+++|+||+|+....... ........+ ....+++++||+++.|
T Consensus 85 ~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~ 158 (170)
T cd01876 85 VVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQG 158 (170)
T ss_pred EEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCC
Confidence 999999876532 22334555442 26999999999985432211 112222222 2335899999999999
Q ss_pred HHHHHHHHHHH
Q psy3029 256 IEDVFLNVSKG 266 (617)
Q Consensus 256 I~eLf~~I~~~ 266 (617)
+++++++|.+.
T Consensus 159 ~~~l~~~l~~~ 169 (170)
T cd01876 159 IDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 198
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.59 E-value=1.5e-14 Score=166.57 Aligned_cols=144 Identities=19% Similarity=0.180 Sum_probs=98.2
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
.++|||||+++|....+.......+..+.....+.++ ...+.||||||++.|..++..++..+|++|||||+++...-
T Consensus 299 vd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~ 376 (787)
T PRK05306 299 VDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMP 376 (787)
T ss_pred CCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCH
Confidence 9999999999998877654433332222222333333 35789999999999999998889999999999999874322
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcc--ccCHHHHH---HHHHhcC--CeEEEEcCCCCCCHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSR--EVNREEAF---HYSKSIG--GTYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~--~v~~~e~~---~~~~~~g--~~~~evSAktg~gI~eLf~~I~~ 265 (617)
+....| ..+. ..++|+|||+||+|+.... .+. .+.. .++..++ ++++++||++|.||++|++.|..
T Consensus 377 qT~e~i-~~a~---~~~vPiIVviNKiDl~~a~~e~V~-~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 377 QTIEAI-NHAK---AAGVPIIVAINKIDKPGANPDRVK-QELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred hHHHHH-HHHH---hcCCcEEEEEECccccccCHHHHH-HHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 211111 1221 2357999999999995421 111 1111 1223333 68999999999999999999865
No 199
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.58 E-value=2.5e-14 Score=163.24 Aligned_cols=145 Identities=17% Similarity=0.191 Sum_probs=100.9
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcce--eEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChh
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGA--SFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYH 192 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~--~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~ 192 (617)
.++|||||+++|....+.....+++.. ..+...+...+....+.||||||++.|..++..++..+|++|||+|+++..
T Consensus 253 vdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv 332 (742)
T CHL00189 253 VDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGV 332 (742)
T ss_pred CCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCC
Confidence 999999999999987665433322222 223333333445688999999999999999999999999999999998753
Q ss_pred hHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHH-------HHhcC--CeEEEEcCCCCCCHHHHHHHH
Q psy3029 193 SFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHY-------SKSIG--GTYYETSALQDQGIEDVFLNV 263 (617)
Q Consensus 193 S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~-------~~~~g--~~~~evSAktg~gI~eLf~~I 263 (617)
..+....| ..+. ...+|+|||+||+|+.... .++.... ...++ ++++++||++|.||++|++.|
T Consensus 333 ~~QT~E~I-~~~k---~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I 405 (742)
T CHL00189 333 KPQTIEAI-NYIQ---AANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETI 405 (742)
T ss_pred ChhhHHHH-HHHH---hcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhh
Confidence 22222211 2222 2347999999999986432 1222111 22233 589999999999999999988
Q ss_pred HHH
Q psy3029 264 SKG 266 (617)
Q Consensus 264 ~~~ 266 (617)
...
T Consensus 406 ~~l 408 (742)
T CHL00189 406 LLL 408 (742)
T ss_pred hhh
Confidence 764
No 200
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.58 E-value=2.6e-14 Score=161.76 Aligned_cols=147 Identities=21% Similarity=0.231 Sum_probs=106.3
Q ss_pred CCCCHHHHHHHHHcCC--C-----CCcc------CCCcceeEEEEEEEE-----CCeEEEEEEEecCCcccccccchhhh
Q psy3029 115 LGVGKTSMVVRYIGKM--F-----SHHI------SPTIGASFFTAKINV-----GENKVKLQVWDTAGQERFRSMAPMYY 176 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~--~-----~~~~------~~t~g~~~~~~~i~~-----~~~~~~l~i~Dt~G~e~~~~~~~~~~ 176 (617)
.++|||||+.+|+... + ...+ ..+.|.++....+.+ ++..+.++||||||+.+|...+..++
T Consensus 16 vd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~~~v~~sl 95 (600)
T PRK05433 16 IDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEVSRSL 95 (600)
T ss_pred CCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHHHHHHHHH
Confidence 9999999999997521 1 1111 123455555444333 45578999999999999998899999
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC---eEEEEcCCCC
Q psy3029 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG---TYYETSALQD 253 (617)
Q Consensus 177 ~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~---~~~evSAktg 253 (617)
+.+|++|+|+|+++.........|..... .++|+++|+||+|+..... .+...++...+++ .++++||++|
T Consensus 96 ~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~~~vi~iSAktG 169 (600)
T PRK05433 96 AACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDASDAVLVSAKTG 169 (600)
T ss_pred HHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCcceEEEEecCCC
Confidence 99999999999998766655555544322 3479999999999854321 2222344444555 3899999999
Q ss_pred CCHHHHHHHHHHHH
Q psy3029 254 QGIEDVFLNVSKGL 267 (617)
Q Consensus 254 ~gI~eLf~~I~~~l 267 (617)
.|+++++++|.+.+
T Consensus 170 ~GI~~Ll~~I~~~l 183 (600)
T PRK05433 170 IGIEEVLEAIVERI 183 (600)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999998765
No 201
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.58 E-value=1.4e-14 Score=167.85 Aligned_cols=147 Identities=18% Similarity=0.134 Sum_probs=98.0
Q ss_pred CCCCHHHHHHHHHcCCCC-CccCCCcceeEEEEEEEECCeEEEEEEEecCCccc----------cccc-chhhhccCCEE
Q psy3029 115 LGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQVWDTAGQER----------FRSM-APMYYRNANAA 182 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~-~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~----------~~~~-~~~~~~~ad~i 182 (617)
+|||||||+|+|++.... ....+..+.+.....+.+++. .+.+|||+|..+ |..+ ...+++.+|++
T Consensus 459 ~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advv 536 (712)
T PRK09518 459 PNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELA 536 (712)
T ss_pred CCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEE
Confidence 999999999999987642 122232333434444555554 466999999642 1111 12346789999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHH-HHHhc----CCeEEEEcCCCCCCHH
Q psy3029 183 LLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH-YSKSI----GGTYYETSALQDQGIE 257 (617)
Q Consensus 183 IlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~-~~~~~----g~~~~evSAktg~gI~ 257 (617)
|+|+|+++..++..+. ++..+.. .++|++||+||+|+.+... .+.... +...+ ..+++++||++|.|++
T Consensus 537 ilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~ 610 (712)
T PRK09518 537 LFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTN 610 (712)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHH
Confidence 9999999988877654 3444433 3479999999999965322 111211 11111 2477999999999999
Q ss_pred HHHHHHHHHHHH
Q psy3029 258 DVFLNVSKGLIC 269 (617)
Q Consensus 258 eLf~~I~~~l~~ 269 (617)
++++.+.+.+..
T Consensus 611 ~L~~~i~~~~~~ 622 (712)
T PRK09518 611 RLAPAMQEALES 622 (712)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 202
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.58 E-value=7.2e-14 Score=140.63 Aligned_cols=149 Identities=17% Similarity=0.086 Sum_probs=95.4
Q ss_pred cCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccccc-------ccchhhhccCCEE
Q psy3029 110 ANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFR-------SMAPMYYRNANAA 182 (617)
Q Consensus 110 ~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~-------~~~~~~~~~ad~i 182 (617)
+++|++|||||||+++|++........+....+.....+.+. ...+++||+||..+.. .....+++++|++
T Consensus 4 ~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 4 ALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 334449999999999999865321111111122223333333 4679999999975432 1233568899999
Q ss_pred EEEEeCCChh-hHHHHHHHHHHH-----------------------------------------Hhc-------------
Q psy3029 183 LLVFDITQYH-SFAAIKTWVKEL-----------------------------------------KRN------------- 207 (617)
Q Consensus 183 IlV~Dis~~~-S~~~l~~~l~~i-----------------------------------------~~~------------- 207 (617)
++|+|++++. ....+.+.+... .++
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 9999998765 333333333210 000
Q ss_pred ---------C--CCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 208 ---------V--DEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 208 ---------~--~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
. ..-+|+++|+||+|+.. .++...++.. ..++++||+++.|++++|+.|.+.+
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 01269999999999853 3444455543 4689999999999999999998765
No 203
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.56 E-value=2.2e-14 Score=157.15 Aligned_cols=156 Identities=18% Similarity=0.160 Sum_probs=103.4
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCC--C--------------------------
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFS--H-------------------------- 133 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~--~-------------------------- 133 (617)
...++|+++|. +++|||||+++|+...-. .
T Consensus 4 k~~~~v~iiGh----------------------~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~ 61 (425)
T PRK12317 4 KPHLNLAVIGH----------------------VDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDR 61 (425)
T ss_pred CCEEEEEEECC----------------------CCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhcc
Confidence 34567888888 999999999999832110 0
Q ss_pred -ccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCC
Q psy3029 134 -HISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAI-KTWVKELKRNVDEP 211 (617)
Q Consensus 134 -~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l-~~~l~~i~~~~~~~ 211 (617)
......|.+++.....+..+.+.+.||||||+++|.......+..+|++|+|+|++++.++... .+++..+.. .. .
T Consensus 62 ~~~Er~rG~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~-~ 139 (425)
T PRK12317 62 LKEERERGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LG-I 139 (425)
T ss_pred CHhHhhcCccceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cC-C
Confidence 0011355566665566666778999999999988876555567899999999999873222221 122222222 22 1
Q ss_pred CeEEEEEECCCCCCccc----cCHHHHHHHHHhcC-----CeEEEEcCCCCCCHHHHHH
Q psy3029 212 LVLCVVGNKTDLESSRE----VNREEAFHYSKSIG-----GTYYETSALQDQGIEDVFL 261 (617)
Q Consensus 212 iPvIlVgNK~DL~~~~~----v~~~e~~~~~~~~g-----~~~~evSAktg~gI~eLf~ 261 (617)
.|++||+||+|+..... ...+++..+++..+ ++++++||++|.|++++.+
T Consensus 140 ~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 140 NQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred CeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 37899999999964211 11234555665555 4799999999999988653
No 204
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.56 E-value=5.7e-15 Score=149.58 Aligned_cols=95 Identities=17% Similarity=0.241 Sum_probs=79.3
Q ss_pred ccccccchhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCe
Q psy3029 166 ERFRSMAPMYYRNANAALLVFDITQYH-SFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGT 244 (617)
Q Consensus 166 e~~~~~~~~~~~~ad~iIlV~Dis~~~-S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~ 244 (617)
++|..+.+.+++++|++++|||++++. ++..+++|+..+.. .++|++||+||+||.+++++..+.. +.+..++++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~-~~~~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQL-DIYRNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHH-HHHHHCCCe
Confidence 788999999999999999999999887 89999999987754 4579999999999976554443334 344568899
Q ss_pred EEEEcCCCCCCHHHHHHHHH
Q psy3029 245 YYETSALQDQGIEDVFLNVS 264 (617)
Q Consensus 245 ~~evSAktg~gI~eLf~~I~ 264 (617)
++++||++|.|++++|+.|.
T Consensus 100 v~~~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQ 119 (245)
T ss_pred EEEEecCCchhHHHHHhhhc
Confidence 99999999999999998763
No 205
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.55 E-value=4.3e-14 Score=158.87 Aligned_cols=153 Identities=19% Similarity=0.199 Sum_probs=99.5
Q ss_pred cccCCCCCCCCHHHHHHHHHcCCCCCc----cCCCcceeEEEEEEEE------------CCeEEEEEEEecCCccccccc
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGKMFSHH----ISPTIGASFFTAKINV------------GENKVKLQVWDTAGQERFRSM 171 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~~~~~~----~~~t~g~~~~~~~i~~------------~~~~~~l~i~Dt~G~e~~~~~ 171 (617)
.++|+|.+++|||||+++|++..+... +..++|..+....... ......+.||||||++.|..+
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 344444499999999999998766432 2334454432221100 001123889999999999999
Q ss_pred chhhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcccc------------CHHH---
Q psy3029 172 APMYYRNANAALLVFDITQ---YHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREV------------NREE--- 233 (617)
Q Consensus 172 ~~~~~~~ad~iIlV~Dis~---~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v------------~~~e--- 233 (617)
+..+++.+|++|+|||+++ +.+++.+. + +.. .++|+++|+||+|+...... ..+.
T Consensus 86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-~---l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 86 RKRGGALADLAILIVDINEGFKPQTQEALN-I---LRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHhhCCEEEEEEECCcCCCHhHHHHHH-H---HHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 9999999999999999987 44554443 2 222 24799999999998632100 0000
Q ss_pred ---------HHHHHH------------hc--CCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 234 ---------AFHYSK------------SI--GGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 234 ---------~~~~~~------------~~--g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
..++.. .+ .++++++||++|+|+++|+.+|....
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 001111 11 24899999999999999999886543
No 206
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.55 E-value=2e-14 Score=139.79 Aligned_cols=148 Identities=26% Similarity=0.215 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHcCCCC--C------------------ccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchh
Q psy3029 115 LGVGKTSMVVRYIGKMFS--H------------------HISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~--~------------------~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~ 174 (617)
.++|||||+.+|+...-. . ...-|+.. ....+........+.++||||+.+|......
T Consensus 12 ~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~--~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~ 89 (188)
T PF00009_consen 12 VDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDL--SFISFEKNENNRKITLIDTPGHEDFIKEMIR 89 (188)
T ss_dssp TTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSS--EEEEEEBTESSEEEEEEEESSSHHHHHHHHH
T ss_pred CCCCcEeechhhhhhccccccccccccccccccccchhhhccccccc--ccccccccccccceeecccccccceeecccc
Confidence 999999999999843211 0 01112222 2222221245678999999999998888888
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcccc-CHHHHH-HHHHhc------CCeEE
Q psy3029 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREV-NREEAF-HYSKSI------GGTYY 246 (617)
Q Consensus 175 ~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v-~~~e~~-~~~~~~------g~~~~ 246 (617)
.+..+|++|+|+|+.+...... .+.+..+.. .++|+++|+||+|+...+.. ..++.. .+.+.. .++++
T Consensus 90 ~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi 165 (188)
T PF00009_consen 90 GLRQADIAILVVDANDGIQPQT-EEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVI 165 (188)
T ss_dssp HHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEE
T ss_pred eecccccceeeeeccccccccc-ccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEE
Confidence 8999999999999987644322 223333333 34789999999999722110 011122 333333 24799
Q ss_pred EEcCCCCCCHHHHHHHHHHHHH
Q psy3029 247 ETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 247 evSAktg~gI~eLf~~I~~~l~ 268 (617)
++||++|.|+++|++.|.+.++
T Consensus 166 ~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 166 PISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp EEBTTTTBTHHHHHHHHHHHS-
T ss_pred EEecCCCCCHHHHHHHHHHhCc
Confidence 9999999999999999988653
No 207
>KOG0074|consensus
Probab=99.54 E-value=3.5e-14 Score=126.45 Aligned_cols=153 Identities=25% Similarity=0.320 Sum_probs=118.3
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...++|+++|- .|+|||||+.+|.+.. .....||-|... +.+..+ ..+.+.+||
T Consensus 15 ~rEirilllGl----------------------dnAGKTT~LKqL~sED-~~hltpT~GFn~--k~v~~~-g~f~LnvwD 68 (185)
T KOG0074|consen 15 RREIRILLLGL----------------------DNAGKTTFLKQLKSED-PRHLTPTNGFNT--KKVEYD-GTFHLNVWD 68 (185)
T ss_pred cceEEEEEEec----------------------CCCcchhHHHHHccCC-hhhccccCCcce--EEEeec-CcEEEEEEe
Confidence 45688888888 9999999999998876 456778888654 444333 458999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHh
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKS 240 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~ 240 (617)
.+|+...+..|..||.+.|++|+|+|.+|..-|+++.+-+.++.+.. -..+|++|.+||.|+..... ....+..
T Consensus 69 iGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~-----~eeia~k 143 (185)
T KOG0074|consen 69 IGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK-----VEEIALK 143 (185)
T ss_pred cCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc-----hHHHHHh
Confidence 99999999999999999999999999999888998876555554432 34689999999999864322 2223332
Q ss_pred cC--------CeEEEEcCCCCCCHHHHHHHHHH
Q psy3029 241 IG--------GTYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 241 ~g--------~~~~evSAktg~gI~eLf~~I~~ 265 (617)
++ ..+-+|||.+++|+.+-.+++..
T Consensus 144 lnl~~lrdRswhIq~csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 144 LNLAGLRDRSWHIQECSALSLEGSTDGSDWVQS 176 (185)
T ss_pred cchhhhhhceEEeeeCccccccCccCcchhhhc
Confidence 22 36789999999999888887754
No 208
>KOG0076|consensus
Probab=99.53 E-value=2e-14 Score=132.64 Aligned_cols=149 Identities=28% Similarity=0.349 Sum_probs=114.2
Q ss_pred CCCCHHHHHHHHHcCC-------CCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEe
Q psy3029 115 LGVGKTSMVVRYIGKM-------FSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFD 187 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~-------~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~D 187 (617)
.|+|||||+.++.... ......+|+|....++.+ ....+.+||.+|++..++++..||..++++|+|+|
T Consensus 26 dnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v----~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viD 101 (197)
T KOG0076|consen 26 DNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV----CNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVID 101 (197)
T ss_pred ccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee----ccceeEEEEcCChHHHHHHHHHHHHHhceeEEeec
Confidence 9999999998875321 124566888887776665 35679999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhc-CCCCCeEEEEEECCCCCCccccCHHHHHHH---HHhc---CCeEEEEcCCCCCCHHHHH
Q psy3029 188 ITQYHSFAAIKTWVKELKRN-VDEPLVLCVVGNKTDLESSREVNREEAFHY---SKSI---GGTYYETSALQDQGIEDVF 260 (617)
Q Consensus 188 is~~~S~~~l~~~l~~i~~~-~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~---~~~~---g~~~~evSAktg~gI~eLf 260 (617)
+++++-|+....-+..+... .-..+|+++.+||.|+.+... .+++... +... .+++.+|||.+|+||++-.
T Consensus 102 a~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi 179 (197)
T KOG0076|consen 102 ATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--AAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGI 179 (197)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--HHHHHHHhhhhhhcCCccCccccchhhhcccHHHHH
Confidence 99998888776555554332 235689999999999865422 2333222 2222 3589999999999999999
Q ss_pred HHHHHHHHH
Q psy3029 261 LNVSKGLIC 269 (617)
Q Consensus 261 ~~I~~~l~~ 269 (617)
.|+.+.+..
T Consensus 180 ~w~v~~~~k 188 (197)
T KOG0076|consen 180 EWLVKKLEK 188 (197)
T ss_pred HHHHHHHhh
Confidence 999987754
No 209
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.53 E-value=3.8e-14 Score=140.22 Aligned_cols=147 Identities=19% Similarity=0.134 Sum_probs=92.5
Q ss_pred cCCCCCCCCHHHHHHHHHcCCCCCc-----------------------------cCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 110 ANWFWLGVGKTSMVVRYIGKMFSHH-----------------------------ISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 110 ~i~G~~nVGKSSLinrl~~~~~~~~-----------------------------~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
+|+|.+|+|||||+++|+...-... .....|.++......+......+.||
T Consensus 3 ~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~li 82 (208)
T cd04166 3 LTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFIIA 82 (208)
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEEEE
Confidence 3444499999999999974321000 00013444444444444456688999
Q ss_pred ecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcccc----CHHHHHH
Q psy3029 161 DTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREV----NREEAFH 236 (617)
Q Consensus 161 Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v----~~~e~~~ 236 (617)
||||+++|......++..+|++|+|+|++++..-.. ...+..+.. .. ..++|+|+||+|+...... ...+...
T Consensus 83 DTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~-~~-~~~iIvviNK~D~~~~~~~~~~~i~~~~~~ 159 (208)
T cd04166 83 DTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSL-LG-IRHVVVAVNKMDLVDYSEEVFEEIVADYLA 159 (208)
T ss_pred ECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHH-cC-CCcEEEEEEchhcccCCHHHHHHHHHHHHH
Confidence 999998877666667889999999999987542211 122222222 11 1357889999998642211 1233445
Q ss_pred HHHhcCC---eEEEEcCCCCCCHHHH
Q psy3029 237 YSKSIGG---TYYETSALQDQGIEDV 259 (617)
Q Consensus 237 ~~~~~g~---~~~evSAktg~gI~eL 259 (617)
+++.+++ +++++||++|.|+.+.
T Consensus 160 ~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 160 FAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHcCCCCceEEEEeCCCCCCCccC
Confidence 5556664 5899999999999754
No 210
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.52 E-value=5.1e-14 Score=154.19 Aligned_cols=155 Identities=19% Similarity=0.162 Sum_probs=103.9
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcC--CCCCc--------------------------
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGK--MFSHH-------------------------- 134 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~--~~~~~-------------------------- 134 (617)
..++|+++|. .++|||||+.+|+.. .....
T Consensus 6 ~~~~v~i~Gh----------------------vd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~ 63 (426)
T TIGR00483 6 EHINVAFIGH----------------------VDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRL 63 (426)
T ss_pred ceeEEEEEec----------------------cCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccC
Confidence 4468888888 999999999999852 11100
Q ss_pred -cCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHH--HHHHHHHHhcCCCC
Q psy3029 135 -ISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAI--KTWVKELKRNVDEP 211 (617)
Q Consensus 135 -~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l--~~~l~~i~~~~~~~ 211 (617)
.....|.+.......+....+.+.||||+|+++|......++..+|++|+|+|+++.+++... ..++..+ .... .
T Consensus 64 ~~e~~rg~Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~-~ 141 (426)
T TIGR00483 64 KEERERGVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLG-I 141 (426)
T ss_pred HHHhhcCceEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcC-C
Confidence 001234444444455566678899999999998876666667899999999999987543211 1122222 2222 2
Q ss_pred CeEEEEEECCCCCCccc----cCHHHHHHHHHhcC-----CeEEEEcCCCCCCHHHHHH
Q psy3029 212 LVLCVVGNKTDLESSRE----VNREEAFHYSKSIG-----GTYYETSALQDQGIEDVFL 261 (617)
Q Consensus 212 iPvIlVgNK~DL~~~~~----v~~~e~~~~~~~~g-----~~~~evSAktg~gI~eLf~ 261 (617)
.|+|||+||+|+..... ...+++..+++..+ ++++++||++|.||++++.
T Consensus 142 ~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 142 NQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred CeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 47999999999964211 11345556676665 4799999999999987553
No 211
>KOG0072|consensus
Probab=99.50 E-value=2.8e-14 Score=127.46 Aligned_cols=148 Identities=25% Similarity=0.317 Sum_probs=109.1
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
-|+||++++.++.-++ .....||+|...... ..++.++++||.+|+-..+..|+.|+.+.|++|+|+|.+|++-.
T Consensus 27 dGaGkttIlyrlqvge-vvttkPtigfnve~v----~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dri 101 (182)
T KOG0072|consen 27 DGAGKTTILYRLQVGE-VVTTKPTIGFNVETV----PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRI 101 (182)
T ss_pred cCCCeeEEEEEcccCc-ccccCCCCCcCcccc----ccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhh
Confidence 9999999999997666 456778988765443 34789999999999999999999999999999999999998754
Q ss_pred HHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHH-----HHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 195 AAIK-TWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF-----HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 195 ~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~-----~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
.... +++..+.+..-....++|++||.|.... ....++. .-.+..-..+|+.||.+|+|+++.++||.+.+.
T Consensus 102 s~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 102 SIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred hhhHHHHHHHhccHhhcCceEEEEeccccchhh--hhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHh
Confidence 3333 2333333322234678999999997532 1122221 111222358999999999999999999998774
Q ss_pred H
Q psy3029 269 C 269 (617)
Q Consensus 269 ~ 269 (617)
.
T Consensus 180 ~ 180 (182)
T KOG0072|consen 180 S 180 (182)
T ss_pred c
Confidence 3
No 212
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.48 E-value=7.3e-13 Score=124.22 Aligned_cols=155 Identities=21% Similarity=0.235 Sum_probs=115.2
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCC--------Ccc----CCCcceeEEEEEEE
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFS--------HHI----SPTIGASFFTAKIN 149 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~--------~~~----~~t~g~~~~~~~i~ 149 (617)
-...||++.|. .++||||++.+++..... ..+ ..|+..++....+
T Consensus 8 ~~~~KIvv~G~----------------------~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~- 64 (187)
T COG2229 8 MIETKIVVIGP----------------------VGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL- 64 (187)
T ss_pred ccceeEEEEcc----------------------cccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE-
Confidence 34468888888 999999999999876531 111 1344444444333
Q ss_pred ECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcccc
Q psy3029 150 VGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREV 229 (617)
Q Consensus 150 ~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v 229 (617)
+....+.++|||||+||..++..+++++.++|+++|.+.+..+ .....+..+....+ +|++|++||.||.+..
T Consensus 65 --~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a~-- 137 (187)
T COG2229 65 --DEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDAL-- 137 (187)
T ss_pred --cCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCCC--
Confidence 2346799999999999999999999999999999999999888 33444444433222 8999999999997543
Q ss_pred CHHHHHHHHHhc--CCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 230 NREEAFHYSKSI--GGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 230 ~~~e~~~~~~~~--g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
+.+++.++.+.. ..++++++|..++++.+.++.+...
T Consensus 138 ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 138 PPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred CHHHHHHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 355555555443 7799999999999999988887654
No 213
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.48 E-value=2.5e-13 Score=153.37 Aligned_cols=149 Identities=19% Similarity=0.210 Sum_probs=108.2
Q ss_pred CCCCHHHHHHHHHc--CCCCCc------------cCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCC
Q psy3029 115 LGVGKTSMVVRYIG--KMFSHH------------ISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNAN 180 (617)
Q Consensus 115 ~nVGKSSLinrl~~--~~~~~~------------~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad 180 (617)
.++|||||+.+|+. +.+... .....|.++......+....+++.||||||+.+|......+++.+|
T Consensus 10 vd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD 89 (594)
T TIGR01394 10 VDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVD 89 (594)
T ss_pred CCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCC
Confidence 99999999999985 222211 1123566666666666667789999999999999888899999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcccc-CHHHHHHHHH-------hcCCeEEEEcCCC
Q psy3029 181 AALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREV-NREEAFHYSK-------SIGGTYYETSALQ 252 (617)
Q Consensus 181 ~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v-~~~e~~~~~~-------~~g~~~~evSAkt 252 (617)
++|+|+|+.+.. ......|+..+.. .++|+|||+||+|+...+.. ..++...++. .+.++++++||++
T Consensus 90 ~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~ 165 (594)
T TIGR01394 90 GVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRA 165 (594)
T ss_pred EEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhc
Confidence 999999998743 3334456666554 34789999999998643211 1233334432 2356899999999
Q ss_pred CC----------CHHHHHHHHHHHH
Q psy3029 253 DQ----------GIEDVFLNVSKGL 267 (617)
Q Consensus 253 g~----------gI~eLf~~I~~~l 267 (617)
|. |+..||+.|++.+
T Consensus 166 g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 166 GWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred CcccccCcccccCHHHHHHHHHHhC
Confidence 96 7999998888765
No 214
>PRK10218 GTP-binding protein; Provisional
Probab=99.48 E-value=6.2e-13 Score=150.02 Aligned_cols=149 Identities=18% Similarity=0.197 Sum_probs=107.7
Q ss_pred CCCCHHHHHHHHHc--CCCCCc------------cCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCC
Q psy3029 115 LGVGKTSMVVRYIG--KMFSHH------------ISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNAN 180 (617)
Q Consensus 115 ~nVGKSSLinrl~~--~~~~~~------------~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad 180 (617)
.++|||||+++|+. +.+... ...+.|.++..+...+..+.+++.+|||||+.+|...+..+++.+|
T Consensus 14 ~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aD 93 (607)
T PRK10218 14 VDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVD 93 (607)
T ss_pred CCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCC
Confidence 99999999999986 333222 2346788888888888778899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccc-cCHHHHHHHHHh-------cCCeEEEEcCCC
Q psy3029 181 AALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSRE-VNREEAFHYSKS-------IGGTYYETSALQ 252 (617)
Q Consensus 181 ~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~-v~~~e~~~~~~~-------~g~~~~evSAkt 252 (617)
++|+|+|+.+..... ...++..+.. .++|+++|+||+|+...+. ...+++..++.. ..++++.+||++
T Consensus 94 g~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~ 169 (607)
T PRK10218 94 SVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALN 169 (607)
T ss_pred EEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhc
Confidence 999999998754322 2233333333 3478899999999864321 112333333322 346799999999
Q ss_pred CC----------CHHHHHHHHHHHH
Q psy3029 253 DQ----------GIEDVFLNVSKGL 267 (617)
Q Consensus 253 g~----------gI~eLf~~I~~~l 267 (617)
|. |+..|++.|+..+
T Consensus 170 G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 170 GIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred CcccCCccccccchHHHHHHHHHhC
Confidence 98 5778887776655
No 215
>KOG1707|consensus
Probab=99.48 E-value=8.6e-14 Score=149.83 Aligned_cols=165 Identities=21% Similarity=0.310 Sum_probs=122.4
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
....++|+++|+ .||||||||-.++...|...+.+-.. .......+.-..+...|+
T Consensus 6 t~kdVRIvliGD----------------------~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~iv 61 (625)
T KOG1707|consen 6 TLKDVRIVLIGD----------------------EGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIV 61 (625)
T ss_pred CccceEEEEECC----------------------CCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEE
Confidence 345678888888 99999999999999998766644322 112222333455668999
Q ss_pred ecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCC--CCCeEEEEEECCCCCCccccCHHH-HHH
Q psy3029 161 DTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIK-TWVKELKRNVD--EPLVLCVVGNKTDLESSREVNREE-AFH 236 (617)
Q Consensus 161 Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~-~~l~~i~~~~~--~~iPvIlVgNK~DL~~~~~v~~~e-~~~ 236 (617)
||+..+.-......-++.||++.+||+++++.+++.+. .||+.+++... ..+||||||||+|+......+.+. ...
T Consensus 62 D~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~p 141 (625)
T KOG1707|consen 62 DTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLP 141 (625)
T ss_pred ecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHH
Confidence 99866655555667788999999999999999999996 79999998773 358999999999997554332222 333
Q ss_pred HHHhcCC--eEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 237 YSKSIGG--TYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 237 ~~~~~g~--~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
+..++.. .+++|||++-.++.++|....+.+..
T Consensus 142 im~~f~EiEtciecSA~~~~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 142 IMIAFAEIETCIECSALTLANVSELFYYAQKAVIH 176 (625)
T ss_pred HHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeec
Confidence 3333322 68999999999999999887765543
No 216
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.47 E-value=1.7e-13 Score=148.91 Aligned_cols=112 Identities=21% Similarity=0.206 Sum_probs=77.3
Q ss_pred EEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcccc--CH
Q psy3029 154 KVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREV--NR 231 (617)
Q Consensus 154 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v--~~ 231 (617)
...+.+|||||+++|...+...+..+|++|+|+|+++........+.+..+... .. .|+++|+||+|+.+.... ..
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-gi-~~iIVvvNK~Dl~~~~~~~~~~ 156 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-GI-KNIVIVQNKIDLVSKEKALENY 156 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-CC-CeEEEEEEccccCCHHHHHHHH
Confidence 367999999999998877777778899999999998643111112223333222 11 378999999999753221 12
Q ss_pred HHHHHHHHhc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 232 EEAFHYSKSI---GGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 232 ~e~~~~~~~~---g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
+++..+.... +++++++||++|.|+++|++.|...+
T Consensus 157 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 157 EEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 3333444332 56899999999999999999987654
No 217
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.47 E-value=6.7e-13 Score=150.55 Aligned_cols=148 Identities=18% Similarity=0.120 Sum_probs=96.5
Q ss_pred CCCCCCCHHHHHHHHHcC---CCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeC
Q psy3029 112 WFWLGVGKTSMVVRYIGK---MFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDI 188 (617)
Q Consensus 112 ~G~~nVGKSSLinrl~~~---~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Di 188 (617)
+|..++|||||+++|++. .+..+....+..+.....+... ....+.||||||+++|.......+..+|++++|+|+
T Consensus 6 ~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~-~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda 84 (614)
T PRK10512 6 AGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP-DGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVAC 84 (614)
T ss_pred ECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC-CCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEEC
Confidence 333999999999999863 2222222222222222222222 224589999999999877667778899999999999
Q ss_pred CCh---hhHHHHHHHHHHHHhcCCCCCe-EEEEEECCCCCCccccC--HHHHHHHHHhcC---CeEEEEcCCCCCCHHHH
Q psy3029 189 TQY---HSFAAIKTWVKELKRNVDEPLV-LCVVGNKTDLESSREVN--REEAFHYSKSIG---GTYYETSALQDQGIEDV 259 (617)
Q Consensus 189 s~~---~S~~~l~~~l~~i~~~~~~~iP-vIlVgNK~DL~~~~~v~--~~e~~~~~~~~g---~~~~evSAktg~gI~eL 259 (617)
++. .+.+.+ ..+.. . ++| ++||+||+|+.++..+. .+++.+++...+ .+++++||++|.|+++|
T Consensus 85 ~eg~~~qT~ehl----~il~~-l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L 157 (614)
T PRK10512 85 DDGVMAQTREHL----AILQL-T--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDAL 157 (614)
T ss_pred CCCCcHHHHHHH----HHHHH-c--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHH
Confidence 874 333332 22222 1 134 67999999996532221 234445555444 58999999999999999
Q ss_pred HHHHHHHH
Q psy3029 260 FLNVSKGL 267 (617)
Q Consensus 260 f~~I~~~l 267 (617)
++.|....
T Consensus 158 ~~~L~~~~ 165 (614)
T PRK10512 158 REHLLQLP 165 (614)
T ss_pred HHHHHHhh
Confidence 99987543
No 218
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=4.4e-13 Score=136.24 Aligned_cols=214 Identities=19% Similarity=0.160 Sum_probs=138.5
Q ss_pred ccchhhHhhhcc-hHHHHHHHHhhhhhhccCCCccccccCCccccccccccccCCcccccccccccceEEEEEccCcccc
Q psy3029 19 YETDLFLLNRTN-QSKEQLRRKQKEGKIQTSSLTEVSVNLPKLNYQKNNKNKKKTLIPYLEMLVSNKIKVGLLSDKFVVG 97 (617)
Q Consensus 19 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikV~i~G~~~~~~ 97 (617)
....|..+++.. +.++..+.|++.++...+.++.+...|..++..+.-..+....++ .-..|+|.|-
T Consensus 109 l~~eYi~~lk~a~~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~~LP~Idp-------~~pTivVaG~----- 176 (346)
T COG1084 109 LAREYIRLLKAAKDPKEANQLRRQAFGRVASIIKKIDDDLEFLRKARDHLKKLPAIDP-------DLPTIVVAGY----- 176 (346)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCC-------CCCeEEEecC-----
Confidence 345677777755 678888888888888888887776655554432221122222221 2247889998
Q ss_pred cccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcc-----ccccc-
Q psy3029 98 LSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQE-----RFRSM- 171 (617)
Q Consensus 98 ~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e-----~~~~~- 171 (617)
||||||||++++++.+..-...| -.+-.....++..+..++|++||||.- +.+..
T Consensus 177 -----------------PNVGKSSlv~~lT~AkpEvA~YP--FTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE 237 (346)
T COG1084 177 -----------------PNVGKSSLVRKLTTAKPEVAPYP--FTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIE 237 (346)
T ss_pred -----------------CCCcHHHHHHHHhcCCCccCCCC--ccccceeEeeeecCCceEEEecCCcccCCChHHhcHHH
Confidence 99999999999998875322222 111122223344566799999999962 12211
Q ss_pred --chhhhc-cCCEEEEEEeCCChh--hHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHh-cCCeE
Q psy3029 172 --APMYYR-NANAALLVFDITQYH--SFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKS-IGGTY 245 (617)
Q Consensus 172 --~~~~~~-~ad~iIlV~Dis~~~--S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~-~g~~~ 245 (617)
.-.+++ =.++|||+||.+... +.+.-...+.++..... .|+++|.||+|+.....+. ++...... .+...
T Consensus 238 ~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~~--~~~~~~~~~~~~~~ 313 (346)
T COG1084 238 RQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKLE--EIEASVLEEGGEEP 313 (346)
T ss_pred HHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHHH--HHHHHHHhhccccc
Confidence 111222 368899999998765 45555567788877665 6999999999987544432 23223333 33457
Q ss_pred EEEcCCCCCCHHHHHHHHHHHH
Q psy3029 246 YETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 246 ~evSAktg~gI~eLf~~I~~~l 267 (617)
..+++..+.+++.+.+.+....
T Consensus 314 ~~~~~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 314 LKISATKGCGLDKLREEVRKTA 335 (346)
T ss_pred cceeeeehhhHHHHHHHHHHHh
Confidence 8899999999998888876653
No 219
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.46 E-value=5e-13 Score=132.66 Aligned_cols=106 Identities=22% Similarity=0.239 Sum_probs=74.8
Q ss_pred CCCCHHHHHHHHHcCCCCCc-----------c------CCCcceeEEEEEEEE-----CCeEEEEEEEecCCcccccccc
Q psy3029 115 LGVGKTSMVVRYIGKMFSHH-----------I------SPTIGASFFTAKINV-----GENKVKLQVWDTAGQERFRSMA 172 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~-----------~------~~t~g~~~~~~~i~~-----~~~~~~l~i~Dt~G~e~~~~~~ 172 (617)
.++|||||+++|+....... + ....|.++....+.+ ++..+.+.+|||+|+.+|....
T Consensus 9 ~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f~~~~ 88 (213)
T cd04167 9 LHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNFMDEV 88 (213)
T ss_pred CCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcchHHHH
Confidence 99999999999986433211 0 112333333222222 3456899999999999998888
Q ss_pred hhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCC
Q psy3029 173 PMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLE 224 (617)
Q Consensus 173 ~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~ 224 (617)
..++..+|++|+|+|+.+..++.. .+|+..+.. ..+|+++|+||+|+.
T Consensus 89 ~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 89 AAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 888999999999999988766543 344444433 237999999999975
No 220
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.45 E-value=1.2e-12 Score=131.99 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=77.8
Q ss_pred CCCCCCCHHHHHHHHHcCCCC--------C-----cc---CCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhh
Q psy3029 112 WFWLGVGKTSMVVRYIGKMFS--------H-----HI---SPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175 (617)
Q Consensus 112 ~G~~nVGKSSLinrl~~~~~~--------~-----~~---~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~ 175 (617)
+|.+|+|||||+++|+...-. . .+ ....|.++......+....+++.+|||||+.+|...+..+
T Consensus 5 ~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~ 84 (237)
T cd04168 5 LAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERS 84 (237)
T ss_pred EcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHH
Confidence 333999999999999753100 0 00 1223444444455555567889999999999998888899
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCC
Q psy3029 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLE 224 (617)
Q Consensus 176 ~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~ 224 (617)
++.+|++++|+|+++.... ....|+..+.. .++|+++|+||+|+.
T Consensus 85 l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~ 129 (237)
T cd04168 85 LSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence 9999999999999886543 23445555544 247999999999985
No 221
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.44 E-value=1.5e-12 Score=147.05 Aligned_cols=146 Identities=23% Similarity=0.264 Sum_probs=94.0
Q ss_pred CCCCHHHHHHHHHcCCCCCcc----CCCcceeEEEEEEEE--CCeE-----E-----EEEEEecCCcccccccchhhhcc
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHI----SPTIGASFFTAKINV--GENK-----V-----KLQVWDTAGQERFRSMAPMYYRN 178 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~----~~t~g~~~~~~~i~~--~~~~-----~-----~l~i~Dt~G~e~~~~~~~~~~~~ 178 (617)
+++|||||+++|.+....... ..++|.++....... .+.. . .+.||||||++.|..++...+..
T Consensus 15 ~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~ 94 (586)
T PRK04004 15 VDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGAL 94 (586)
T ss_pred CCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHHHHHHhHhh
Confidence 999999999999876532222 224444332221100 0111 1 26899999999999888888899
Q ss_pred CCEEEEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcccc----C------------HH-------
Q psy3029 179 ANAALLVFDITQ---YHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREV----N------------RE------- 232 (617)
Q Consensus 179 ad~iIlV~Dis~---~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v----~------------~~------- 232 (617)
+|++|+|+|+++ +.++..+.. +.. .++|+++|+||+|+...... . .+
T Consensus 95 aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ 167 (586)
T PRK04004 95 ADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLY 167 (586)
T ss_pred CCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999987 555554432 222 34799999999998521100 0 00
Q ss_pred HHHHHHHhc---------------CCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 233 EAFHYSKSI---------------GGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 233 e~~~~~~~~---------------g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
+...+.... .++++++||++|.|+++|++.+...+
T Consensus 168 ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 168 ELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 000111111 24799999999999999998876543
No 222
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.44 E-value=8.5e-13 Score=121.07 Aligned_cols=128 Identities=26% Similarity=0.295 Sum_probs=88.6
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcc----cccccchhhhccCCEEEEEEeCCC
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQE----RFRSMAPMYYRNANAALLVFDITQ 190 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e----~~~~~~~~~~~~ad~iIlV~Dis~ 190 (617)
.|+|||||+++|.+... .+..|..+.+. =.++||||.- .|...+-....+||+|++|.|+++
T Consensus 10 ~g~GKTTL~q~L~~~~~--~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~ 75 (143)
T PF10662_consen 10 SGSGKTTLAQALNGEEI--RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATE 75 (143)
T ss_pred CCCCHHHHHHHHcCCCC--CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 99999999999988653 44444333221 1358999952 222222333458999999999998
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHH
Q psy3029 191 YHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVS 264 (617)
Q Consensus 191 ~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~ 264 (617)
+.+... +.+.... ..|+|=|+||+|+... ....+.+.++.+..|+ .+|++|+.+|+||++|+++|.
T Consensus 76 ~~~~~p-----P~fa~~f--~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 76 PRSVFP-----PGFASMF--NKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CCccCC-----chhhccc--CCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 754211 1222222 2599999999999732 2245667778888888 689999999999999999874
No 223
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.44 E-value=2.3e-12 Score=126.08 Aligned_cols=139 Identities=16% Similarity=0.113 Sum_probs=92.3
Q ss_pred CCCCHHHHHHHHHcCCC-----C-C--------ccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCC
Q psy3029 115 LGVGKTSMVVRYIGKMF-----S-H--------HISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNAN 180 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~-----~-~--------~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad 180 (617)
.++|||||+++|+.... . . ......|.++......+......+.++||||+.+|.......+..+|
T Consensus 11 ~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D 90 (195)
T cd01884 11 VDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMD 90 (195)
T ss_pred CCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhhhCC
Confidence 99999999999975310 0 0 01113455555555556566678899999999888777777788999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCe-EEEEEECCCCCCcccc---CHHHHHHHHHhcC-----CeEEEEcCC
Q psy3029 181 AALLVFDITQYHSFAAIKTWVKELKRNVDEPLV-LCVVGNKTDLESSREV---NREEAFHYSKSIG-----GTYYETSAL 251 (617)
Q Consensus 181 ~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iP-vIlVgNK~DL~~~~~v---~~~e~~~~~~~~g-----~~~~evSAk 251 (617)
++++|+|+.....-. ..+.+..+... ++| +|+|+||+|+..+.+. ..+++..+....+ ++++++||+
T Consensus 91 ~~ilVvda~~g~~~~-~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~ 166 (195)
T cd01884 91 GAILVVSATDGPMPQ-TREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSAL 166 (195)
T ss_pred EEEEEEECCCCCcHH-HHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCc
Confidence 999999997653222 12233333332 245 7899999998643221 1234445555544 579999999
Q ss_pred CCCCHH
Q psy3029 252 QDQGIE 257 (617)
Q Consensus 252 tg~gI~ 257 (617)
+|.|+.
T Consensus 167 ~g~n~~ 172 (195)
T cd01884 167 KALEGD 172 (195)
T ss_pred cccCCC
Confidence 999863
No 224
>KOG2375|consensus
Probab=99.44 E-value=3.1e-13 Score=150.29 Aligned_cols=159 Identities=19% Similarity=0.183 Sum_probs=108.5
Q ss_pred CchHhHHhHhhcCCEEEEEEeCCcEEEEEEeeecCC--ceEEEEeeeecCCCCCC--CCC-CCcccceeeeecCc---ee
Q psy3029 449 NARFMQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQ--FELVISMTHQVDPENPQ--CID-PNTVVDMKIFKLDD---IV 520 (617)
Q Consensus 449 n~r~~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~--~~~~l~~~~~~~~~~~~--~~~-~~~~~~~l~~~~~d---~v 520 (617)
.++++|++++.||..|.+.+.+|..|.|||+.++++ ..++|.++-........ ..+ .-....+..|+..| |+
T Consensus 56 ~~~~~~~~~~s~g~~~~~~l~ng~~~~gi~~s~N~~~~~gi~~~a~~~~~~~g~r~~~~r~~~~~~~~~~i~~~~~~eL~ 135 (756)
T KOG2375|consen 56 RDSLAYKATDSIGPSVAVLLGNGSSYSGILVSNNPEQTVGIILVAADAKRRSGTRGSESRDWMPDPPTAGIPLEDELELT 135 (756)
T ss_pred hhhhhhhhcCCCCcccceeccCCCCCcceeeecchhhcccccccccccccccccccccccccccCCCcccCccccccchh
Confidence 579999999999999999999999999999999876 45566665444221111 111 12333455555443 33
Q ss_pred EEEecccccc---------c-----cccCcccchhhhcccCC-CCCCcccccCcCCCC--------------CCCCCCcc
Q psy3029 521 RIEAKNVDLE---------Y-----AVRDTFATDTAISKFNG-VIGERELEPWAEDML--------------GPGGDDDF 571 (617)
Q Consensus 521 ~~~~~~v~~~---------~-----~~~~~f~TDt~IS~~n~-~~~ereL~~W~p~~~--------------~~~~~d~f 571 (617)
.+.++.-+.. . +.-..|+||..+...-+ +..|| |.+|++|+. ++.|||||
T Consensus 136 ~~~~~~~~k~~~s~~~gv~~e~~~~~a~Ss~it~~~~~~~~~ee~~e~-l~p~~~~e~v~~~~~~~~~rl~~~~kGw~Qf 214 (756)
T KOG2375|consen 136 TSNAEQDEKATNSKSDGVQSEKPDEAAYSSFITDSEGKGDEGEEEAER-LAPWIEDEVVPGGGIAEERRLENDNKGWDQF 214 (756)
T ss_pred hcccccchhhhcchhhccccccccccccccccccccccccccccchhh-cCCCCcccccccccchhhcccccccCCCCcc
Confidence 3333332220 0 11147888887775211 23334 559999752 56799999
Q ss_pred hhh---hccccCCCCccCCccccccccCCCCCchHHHHHHHHh
Q psy3029 572 ELD---QMCNHNVGTATSSIKMFIFPLIQVAPYTMEESVLAIQ 611 (617)
Q Consensus 572 ~~n---e~~~~~~st~de~l~~yt~~l~~~~~~~~~~~~~~~~ 611 (617)
++| ..+|+++|||||+| ||++||+.+..+|. ...|++
T Consensus 215 ~v~f~~~~~f~v~stFde~l--y~tk~d~~~kn~e~-~e~a~R 254 (756)
T KOG2375|consen 215 EVNFHGSKKFNVMSTFDEEL--YTTKLDKKVKNYEA-YEGAER 254 (756)
T ss_pred chhhhhhhhhceeeeeehhh--hcceecccCCchhh-HHHHHH
Confidence 999 99999999999999 99999998888877 555555
No 225
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.43 E-value=9e-13 Score=143.36 Aligned_cols=110 Identities=18% Similarity=0.184 Sum_probs=73.4
Q ss_pred EEEEEEecCCcccccccchhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcccc--CH
Q psy3029 155 VKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYH-SFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREV--NR 231 (617)
Q Consensus 155 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~-S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v--~~ 231 (617)
..+.||||||+++|..........+|++|+|+|++++. .-.... .+..+... . ..|+++|+||+|+.++... ..
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l~~~-~-i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMALDII-G-IKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHHHHc-C-CCcEEEEEEeeccccchhHHHHH
Confidence 57899999999887654444455789999999999643 111111 11222221 1 1368999999999754321 12
Q ss_pred HHHHHHHHhc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 232 EEAFHYSKSI---GGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 232 ~e~~~~~~~~---g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
+++..++... +++++++||++|.|+++|++.|...+
T Consensus 162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 3344444332 46899999999999999999987654
No 226
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.43 E-value=6.2e-13 Score=147.05 Aligned_cols=144 Identities=16% Similarity=0.138 Sum_probs=104.3
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccc------cccchhhhc--cCCEEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERF------RSMAPMYYR--NANAALLVF 186 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~------~~~~~~~~~--~ad~iIlV~ 186 (617)
||||||||+|+|++.+.. ...-+|++...++..+.....+++++|.||.-.. ....+.|+. +.|++|-|+
T Consensus 12 PNvGKTtlFN~LTG~~q~--VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVv 89 (653)
T COG0370 12 PNVGKTTLFNALTGANQK--VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVV 89 (653)
T ss_pred CCccHHHHHHHHhccCce--ecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEc
Confidence 999999999999998643 3444566667777666666667999999996321 223445554 579999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 187 DITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 187 Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
|+++.+--- ..--++.+ -++|++++.|++|....+.+..+ ..++.+.+|+|++++||++|+|++++++.+.+.
T Consensus 90 DAtnLeRnL---yltlQLlE---~g~p~ilaLNm~D~A~~~Gi~ID-~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~ 162 (653)
T COG0370 90 DATNLERNL---YLTLQLLE---LGIPMILALNMIDEAKKRGIRID-IEKLSKLLGVPVVPTVAKRGEGLEELKRAIIEL 162 (653)
T ss_pred ccchHHHHH---HHHHHHHH---cCCCeEEEeccHhhHHhcCCccc-HHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHh
Confidence 998854211 11122222 34799999999998665444332 457888999999999999999999999988764
Q ss_pred H
Q psy3029 267 L 267 (617)
Q Consensus 267 l 267 (617)
.
T Consensus 163 ~ 163 (653)
T COG0370 163 A 163 (653)
T ss_pred c
Confidence 4
No 227
>COG2262 HflX GTPases [General function prediction only]
Probab=99.41 E-value=3e-12 Score=134.05 Aligned_cols=152 Identities=18% Similarity=0.146 Sum_probs=101.0
Q ss_pred CCCCCCCCHHHHHHHHHcCCCCCc--cCCCcceeEEEEEEEECCeEEEEEEEecCCccccc--ccchhh------hccCC
Q psy3029 111 NWFWLGVGKTSMVVRYIGKMFSHH--ISPTIGASFFTAKINVGENKVKLQVWDTAGQERFR--SMAPMY------YRNAN 180 (617)
Q Consensus 111 i~G~~nVGKSSLinrl~~~~~~~~--~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~--~~~~~~------~~~ad 180 (617)
++|+.|+|||||+|+|++...... ...|.. -.++.+.+.+ ...+.+-||-|..+.- .+...| ...+|
T Consensus 197 LvGYTNAGKSTL~N~LT~~~~~~~d~LFATLd--pttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aD 273 (411)
T COG2262 197 LVGYTNAGKSTLFNALTGADVYVADQLFATLD--PTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEAD 273 (411)
T ss_pred EEeeccccHHHHHHHHhccCeecccccccccc--CceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHhhcCC
Confidence 334499999999999997654322 223333 2345555554 3467888999964321 122222 34799
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHH
Q psy3029 181 AALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVF 260 (617)
Q Consensus 181 ~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf 260 (617)
+++.|+|+++|.....+..-...+.+.....+|+|+|.||+|+..+.. .......... ..+.+||++|.|++.|+
T Consensus 274 lllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~gl~~L~ 348 (411)
T COG2262 274 LLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEGLDLLR 348 (411)
T ss_pred EEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcCHHHHH
Confidence 999999999997666665555555555445589999999999865432 1111111112 58899999999999999
Q ss_pred HHHHHHHHHh
Q psy3029 261 LNVSKGLICL 270 (617)
Q Consensus 261 ~~I~~~l~~~ 270 (617)
+.|...+...
T Consensus 349 ~~i~~~l~~~ 358 (411)
T COG2262 349 ERIIELLSGL 358 (411)
T ss_pred HHHHHHhhhc
Confidence 9999887643
No 228
>KOG1489|consensus
Probab=99.39 E-value=2.9e-12 Score=129.23 Aligned_cols=149 Identities=17% Similarity=0.222 Sum_probs=101.2
Q ss_pred ccccCCCCCCCCHHHHHHHHHcCCCC-Ccc-----CCCcceeEEEEEEEECCeEEEEEEEecCCccccc----ccchhh-
Q psy3029 107 CFEANWFWLGVGKTSMVVRYIGKMFS-HHI-----SPTIGASFFTAKINVGENKVKLQVWDTAGQERFR----SMAPMY- 175 (617)
Q Consensus 107 ~~~~i~G~~nVGKSSLinrl~~~~~~-~~~-----~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~----~~~~~~- 175 (617)
+-+.++|+||+|||||+++|...+.. +.| .|++| .+..+ +...+.+-|+||..+-. .+--.|
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG------~v~yd-df~q~tVADiPGiI~GAh~nkGlG~~FL 269 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG------TVNYD-DFSQITVADIPGIIEGAHMNKGLGYKFL 269 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc------eeecc-ccceeEeccCccccccccccCcccHHHH
Confidence 45678899999999999999987642 222 23333 11112 22348999999974322 222333
Q ss_pred --hccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhcCC--CCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC-eEEE
Q psy3029 176 --YRNANAALLVFDITQY---HSFAAIKTWVKELKRNVD--EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG-TYYE 247 (617)
Q Consensus 176 --~~~ad~iIlV~Dis~~---~S~~~l~~~l~~i~~~~~--~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~-~~~e 247 (617)
++.++.++||+|++.+ ..++.++....++..+.. ...|.+||+||+|+.+.. .....++++.+.- .+++
T Consensus 270 rHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~p 346 (366)
T KOG1489|consen 270 RHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVP 346 (366)
T ss_pred HHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEE
Confidence 5589999999999988 666666655555544332 346999999999985221 1223566666654 4999
Q ss_pred EcCCCCCCHHHHHHHHHH
Q psy3029 248 TSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 248 vSAktg~gI~eLf~~I~~ 265 (617)
+||++++|++++++.|.+
T Consensus 347 vsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 347 VSAKSGEGLEELLNGLRE 364 (366)
T ss_pred eeeccccchHHHHHHHhh
Confidence 999999999999987754
No 229
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.39 E-value=5.6e-12 Score=123.64 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=89.2
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcce---eEEEEEEEECCeEEEEEEEecCCcccccccchhh-----hccCCEEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGA---SFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY-----YRNANAALLVF 186 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~---~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~-----~~~ad~iIlV~ 186 (617)
+|||||||+|.|++..+......+.+. +.....+.. .....+.+|||+|..........| +..+|++++|.
T Consensus 10 ~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~ 88 (197)
T cd04104 10 SGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIIS 88 (197)
T ss_pred CCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEe
Confidence 999999999999986543333333331 111111111 112368999999986443333333 56789988885
Q ss_pred eCCChhhHHHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCccc-----------cCHHHHHHHH----HhcCC---eEEE
Q psy3029 187 DITQYHSFAAIK-TWVKELKRNVDEPLVLCVVGNKTDLESSRE-----------VNREEAFHYS----KSIGG---TYYE 247 (617)
Q Consensus 187 Dis~~~S~~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~-----------v~~~e~~~~~----~~~g~---~~~e 247 (617)
| + .|...+ .|+..+.+. ..|+++|+||+|+..... ...++..+.+ ...+. ++|.
T Consensus 89 ~--~--~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~ 161 (197)
T cd04104 89 S--T--RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFL 161 (197)
T ss_pred C--C--CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 4 2 244443 455555553 358999999999843111 0011122222 12222 7899
Q ss_pred EcCC--CCCCHHHHHHHHHHHHHHh
Q psy3029 248 TSAL--QDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 248 vSAk--tg~gI~eLf~~I~~~l~~~ 270 (617)
+|+. .+.++..|.+.|...+...
T Consensus 162 vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 162 VSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred EeCCChhhcChHHHHHHHHHHhhHH
Confidence 9998 6799999999999888754
No 230
>KOG1423|consensus
Probab=99.37 E-value=6.5e-12 Score=125.99 Aligned_cols=160 Identities=18% Similarity=0.181 Sum_probs=103.3
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
.+.+.|+++|. ||||||||.|.+++.+..+.. ..+-.++......+......+.|+|
T Consensus 70 ~k~L~vavIG~----------------------PNvGKStLtN~mig~kv~~vS-~K~~TTr~~ilgi~ts~eTQlvf~D 126 (379)
T KOG1423|consen 70 QKSLYVAVIGA----------------------PNVGKSTLTNQMIGQKVSAVS-RKVHTTRHRILGIITSGETQLVFYD 126 (379)
T ss_pred ceEEEEEEEcC----------------------CCcchhhhhhHhhCCcccccc-ccccceeeeeeEEEecCceEEEEec
Confidence 45577888888 999999999999998864332 3333333444444555678999999
Q ss_pred cCCcccc------------cccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcc--
Q psy3029 162 TAGQERF------------RSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSR-- 227 (617)
Q Consensus 162 t~G~e~~------------~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~-- 227 (617)
|||.-.- ..--+..+.+||++++|+|+++...... -+.+..+.++. .+|-|+|.||.|....+
T Consensus 127 TPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~ 203 (379)
T KOG1423|consen 127 TPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRL 203 (379)
T ss_pred CCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhH
Confidence 9996211 1122345678999999999986332211 12233333332 37889999999985432
Q ss_pred -----------ccCHHHHHHHHHhc-------------CC----eEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 228 -----------EVNREEAFHYSKSI-------------GG----TYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 228 -----------~v~~~e~~~~~~~~-------------g~----~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
++.. ...+++.++ |. .+|.+||++|+||+++.++|+.+..
T Consensus 204 Ll~l~~~Lt~g~l~~-~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 204 LLNLKDLLTNGELAK-LKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HhhhHHhccccccch-hhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 1111 011222211 11 4899999999999999999987653
No 231
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.37 E-value=7.9e-12 Score=124.99 Aligned_cols=107 Identities=16% Similarity=0.103 Sum_probs=70.7
Q ss_pred EEEEEEEecCCcccccccchhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccC-
Q psy3029 154 KVKLQVWDTAGQERFRSMAPMYYR--NANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVN- 230 (617)
Q Consensus 154 ~~~l~i~Dt~G~e~~~~~~~~~~~--~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~- 230 (617)
...+.++||||+++|.......+. .+|++++|+|+.....-. ..+++..+.. .++|+++|+||+|+.++....
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~~~ 158 (224)
T cd04165 83 SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALA---LNIPVFVVVTKIDLAPANILQE 158 (224)
T ss_pred CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEECccccCHHHHHH
Confidence 357899999999888654444443 689999999987754322 1233343333 337899999999986532221
Q ss_pred -HHHHHHHHHh--------------------------cCCeEEEEcCCCCCCHHHHHHHHH
Q psy3029 231 -REEAFHYSKS--------------------------IGGTYYETSALQDQGIEDVFLNVS 264 (617)
Q Consensus 231 -~~e~~~~~~~--------------------------~g~~~~evSAktg~gI~eLf~~I~ 264 (617)
.+++.++.+. ...++|.+||.+|.|+++|...|.
T Consensus 159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 1122222221 123899999999999999998764
No 232
>KOG1191|consensus
Probab=99.37 E-value=1.9e-12 Score=137.33 Aligned_cols=165 Identities=22% Similarity=0.219 Sum_probs=117.2
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..++|+|+|+ ||||||||+|.|.+.. ...+.|..|.+++.....++-+.+.+.+.||
T Consensus 267 ~gl~iaIvGr----------------------PNvGKSSLlNaL~~~d-rsIVSpv~GTTRDaiea~v~~~G~~v~L~DT 323 (531)
T KOG1191|consen 267 SGLQIAIVGR----------------------PNVGKSSLLNALSRED-RSIVSPVPGTTRDAIEAQVTVNGVPVRLSDT 323 (531)
T ss_pred cCCeEEEEcC----------------------CCCCHHHHHHHHhcCC-ceEeCCCCCcchhhheeEeecCCeEEEEEec
Confidence 4478999999 9999999999999887 6788899999999988888888889999999
Q ss_pred CCccc-cc--------ccchhhhccCCEEEEEEeC--CChhhHHHHHHHHHHHHhcC------CCCCeEEEEEECCCCCC
Q psy3029 163 AGQER-FR--------SMAPMYYRNANAALLVFDI--TQYHSFAAIKTWVKELKRNV------DEPLVLCVVGNKTDLES 225 (617)
Q Consensus 163 ~G~e~-~~--------~~~~~~~~~ad~iIlV~Di--s~~~S~~~l~~~l~~i~~~~------~~~iPvIlVgNK~DL~~ 225 (617)
+|.-+ -. ...+..+..+|++++|+|+ ++-++-..+.+.+.....-. ..+.|+++|.||.|+..
T Consensus 324 AGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s 403 (531)
T KOG1191|consen 324 AGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVS 403 (531)
T ss_pred cccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccC
Confidence 99744 11 1234457789999999998 33333344444444433211 12358999999999975
Q ss_pred c-cccCHHHHHHHHHhcC---C-eEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 226 S-REVNREEAFHYSKSIG---G-TYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 226 ~-~~v~~~e~~~~~~~~g---~-~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
. .+.... ...+....+ + ...++|+++++|+++|...|.+.+....
T Consensus 404 ~~~~~~~~-~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~ 453 (531)
T KOG1191|consen 404 KIPEMTKI-PVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLV 453 (531)
T ss_pred ccccccCC-ceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence 4 222111 111111111 2 3456999999999999999998876654
No 233
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.36 E-value=2.4e-12 Score=128.35 Aligned_cols=144 Identities=16% Similarity=0.117 Sum_probs=89.6
Q ss_pred CCCCCCCCHHHHHHHHHcCC--CC---------------------------CccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 111 NWFWLGVGKTSMVVRYIGKM--FS---------------------------HHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 111 i~G~~nVGKSSLinrl~~~~--~~---------------------------~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
++|..++|||||+.+|+... .. .......|.+++.....+......+.+||
T Consensus 4 i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~liD 83 (219)
T cd01883 4 VIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTILD 83 (219)
T ss_pred EecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEEEEE
Confidence 34449999999999996210 00 00111234444555555555678899999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChh-------hHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCc--ccc---
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYH-------SFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESS--REV--- 229 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~-------S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~--~~v--- 229 (617)
|+|+.+|.......+..+|++|+|+|+++.. ..+....| ..... .. ..|+++|+||+|+... ...
T Consensus 84 tpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~-~~-~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 84 APGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART-LG-VKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred CCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH-cC-CCeEEEEEEccccccccccHHHHH
Confidence 9999877665666677899999999998842 11112222 22222 22 2489999999999631 110
Q ss_pred -CHHHHHHHHHhcC-----CeEEEEcCCCCCCHH
Q psy3029 230 -NREEAFHYSKSIG-----GTYYETSALQDQGIE 257 (617)
Q Consensus 230 -~~~e~~~~~~~~g-----~~~~evSAktg~gI~ 257 (617)
..+++..+....+ ++++++||++|.||+
T Consensus 161 ~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 161 EIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1122223344443 579999999999986
No 234
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.35 E-value=8.6e-12 Score=135.26 Aligned_cols=152 Identities=15% Similarity=0.112 Sum_probs=98.0
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcC-----C--CC-----C--ccCCCcceeEEEEEE
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGK-----M--FS-----H--HISPTIGASFFTAKI 148 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~-----~--~~-----~--~~~~t~g~~~~~~~i 148 (617)
..++|+++|. .++|||||+++|++. + +. . ......|.+.....+
T Consensus 11 ~~~~i~i~Gh----------------------vd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~ 68 (394)
T TIGR00485 11 PHVNIGTIGH----------------------VDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHV 68 (394)
T ss_pred ceEEEEEEee----------------------cCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEE
Confidence 3467888888 999999999999732 0 00 0 011124555555556
Q ss_pred EECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeE-EEEEECCCCCCcc
Q psy3029 149 NVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVL-CVVGNKTDLESSR 227 (617)
Q Consensus 149 ~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPv-IlVgNK~DL~~~~ 227 (617)
.+......+.||||||+++|.......+..+|++++|+|+.+....+. .+.+..+... .+|. |+|+||+|+.+..
T Consensus 69 ~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~ 144 (394)
T TIGR00485 69 EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV---GVPYIVVFLNKCDMVDDE 144 (394)
T ss_pred EEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEEecccCCHH
Confidence 666666789999999999887555555678899999999987432221 1223333322 3564 5689999987533
Q ss_pred ccC---HHHHHHHHHhcC-----CeEEEEcCCCCC-CHHHHH
Q psy3029 228 EVN---REEAFHYSKSIG-----GTYYETSALQDQ-GIEDVF 260 (617)
Q Consensus 228 ~v~---~~e~~~~~~~~g-----~~~~evSAktg~-gI~eLf 260 (617)
+.. .+++..++..++ ++++++||++|. |..+++
T Consensus 145 ~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~ 186 (394)
T TIGR00485 145 ELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWE 186 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCccEEECccccccccCCchh
Confidence 221 234556666655 689999999885 444443
No 235
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.35 E-value=4.8e-12 Score=132.54 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=54.8
Q ss_pred cCCCCCCCCHHHHHHHHHcCCCC------CccCCCcceeEEEEE---------------EEECC-eEEEEEEEecCCc--
Q psy3029 110 ANWFWLGVGKTSMVVRYIGKMFS------HHISPTIGASFFTAK---------------INVGE-NKVKLQVWDTAGQ-- 165 (617)
Q Consensus 110 ~i~G~~nVGKSSLinrl~~~~~~------~~~~~t~g~~~~~~~---------------i~~~~-~~~~l~i~Dt~G~-- 165 (617)
+|+|.||||||||+|+|++.... ....|++|..+.... ...++ ..+.+++|||+|.
T Consensus 2 ~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv~ 81 (318)
T cd01899 2 GLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLVP 81 (318)
T ss_pred EEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCCC
Confidence 45566999999999999987642 223455554433211 00122 3478999999997
Q ss_pred --ccccccchhh---hccCCEEEEEEeCC
Q psy3029 166 --ERFRSMAPMY---YRNANAALLVFDIT 189 (617)
Q Consensus 166 --e~~~~~~~~~---~~~ad~iIlV~Dis 189 (617)
+++..+...+ ++++|++++|+|+.
T Consensus 82 ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 82 GAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4555555554 88999999999997
No 236
>PRK12736 elongation factor Tu; Reviewed
Probab=99.34 E-value=1.2e-11 Score=134.11 Aligned_cols=148 Identities=18% Similarity=0.116 Sum_probs=94.7
Q ss_pred CCCCHHHHHHHHHcCCC-------C--C-----ccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCC
Q psy3029 115 LGVGKTSMVVRYIGKMF-------S--H-----HISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNAN 180 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~-------~--~-----~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad 180 (617)
.++|||||+++|++... . . ......|.++......+......+.||||||+++|.......+..+|
T Consensus 21 vd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d 100 (394)
T PRK12736 21 VDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMD 100 (394)
T ss_pred CCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHhhCC
Confidence 99999999999985210 0 0 01113455555555555555667899999999888665555667899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCe-EEEEEECCCCCCccccC---HHHHHHHHHhcC-----CeEEEEcCC
Q psy3029 181 AALLVFDITQYHSFAAIKTWVKELKRNVDEPLV-LCVVGNKTDLESSREVN---REEAFHYSKSIG-----GTYYETSAL 251 (617)
Q Consensus 181 ~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iP-vIlVgNK~DL~~~~~v~---~~e~~~~~~~~g-----~~~~evSAk 251 (617)
++++|+|+.....-.. .+++..+... .+| +|||+||+|+.+..+.. .+++..+....+ ++++++||+
T Consensus 101 ~~llVvd~~~g~~~~t-~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~ 176 (394)
T PRK12736 101 GAILVVAATDGPMPQT-REHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSAL 176 (394)
T ss_pred EEEEEEECCCCCchhH-HHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeecc
Confidence 9999999987432221 2233333332 356 67899999986433221 234445555554 479999999
Q ss_pred CCC--------CHHHHHHHHHHH
Q psy3029 252 QDQ--------GIEDVFLNVSKG 266 (617)
Q Consensus 252 tg~--------gI~eLf~~I~~~ 266 (617)
+|. ++.+|++.|...
T Consensus 177 ~g~~~~~~~~~~i~~Ll~~l~~~ 199 (394)
T PRK12736 177 KALEGDPKWEDAIMELMDAVDEY 199 (394)
T ss_pred ccccCCCcchhhHHHHHHHHHHh
Confidence 983 456666665543
No 237
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.34 E-value=7.5e-12 Score=117.84 Aligned_cols=145 Identities=19% Similarity=0.136 Sum_probs=95.4
Q ss_pred ccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEE
Q psy3029 168 FRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYE 247 (617)
Q Consensus 168 ~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~e 247 (617)
|..+.+..++++|++|+|+|++++..... ..+...+.. .+.|+++|+||+|+..... .+....+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE---LGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh---CCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence 44567888889999999999987653222 112222221 2469999999999864322 11222344455678999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHhhhcccccccccccccCCccCCCCCCcccccCCCCCCCCCCchhhhheeeeccCCCCC
Q psy3029 248 TSALQDQGIEDVFLNVSKGLICLSQESLHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLTEAETAKFVVGLSINSR 327 (617)
Q Consensus 248 vSAktg~gI~eLf~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ss~~~~~~~~~~~~v~ivG~~~~s~ 327 (617)
+||+++.|+++|++.|.+.+... ....+++++|.+
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~~~-----------------------------------------~~~~~~~~ig~~---- 110 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAKID-----------------------------------------GKEGKVGVVGYP---- 110 (156)
T ss_pred EEccccccHHHHHHHHHHHHhhc-----------------------------------------CCCcEEEEECCC----
Confidence 99999999999999987765310 012456677766
Q ss_pred CCcceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECC
Q psy3029 328 VPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE 376 (617)
Q Consensus 328 ~~~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~ 376 (617)
++|||++++++.... ...+.+++|..+..+.+..++
T Consensus 111 ------------~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~ 146 (156)
T cd01859 111 ------------NVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITS 146 (156)
T ss_pred ------------CCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCC
Confidence 999999999998543 444567777654333333433
No 238
>PRK12735 elongation factor Tu; Reviewed
Probab=99.33 E-value=1.7e-11 Score=133.04 Aligned_cols=157 Identities=15% Similarity=0.113 Sum_probs=101.0
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcC-------CCC-------CccCCCcceeEEEEEE
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGK-------MFS-------HHISPTIGASFFTAKI 148 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~-------~~~-------~~~~~t~g~~~~~~~i 148 (617)
..++|+++|. +++|||||+++|++. .+. .......|.+......
T Consensus 11 ~~~~i~iiGh----------------------vd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~ 68 (396)
T PRK12735 11 PHVNVGTIGH----------------------VDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHV 68 (396)
T ss_pred CeEEEEEECc----------------------CCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeee
Confidence 3467888888 999999999999852 100 0011134555555445
Q ss_pred EECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEE-EEEECCCCCCcc
Q psy3029 149 NVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLC-VVGNKTDLESSR 227 (617)
Q Consensus 149 ~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvI-lVgNK~DL~~~~ 227 (617)
.+......+.|+||||+++|.......+..+|++++|+|+.+...-. ..+++..+.. ..+|.+ +|+||+|+..+.
T Consensus 69 ~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~---~gi~~iivvvNK~Dl~~~~ 144 (396)
T PRK12735 69 EYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDE 144 (396)
T ss_pred EEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEecCCcchH
Confidence 55555567899999999887766666677899999999998743222 1233333332 235755 679999996432
Q ss_pred cc---CHHHHHHHHHhcC-----CeEEEEcCCCCC----------CHHHHHHHHHH
Q psy3029 228 EV---NREEAFHYSKSIG-----GTYYETSALQDQ----------GIEDVFLNVSK 265 (617)
Q Consensus 228 ~v---~~~e~~~~~~~~g-----~~~~evSAktg~----------gI~eLf~~I~~ 265 (617)
+. ..+++..+...++ ++++++||++|. ++.+|++.|..
T Consensus 145 ~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~ 200 (396)
T PRK12735 145 ELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDS 200 (396)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHh
Confidence 21 1224445555543 589999999985 45566655544
No 239
>PRK12289 GTPase RsgA; Reviewed
Probab=99.32 E-value=5.4e-12 Score=133.72 Aligned_cols=94 Identities=19% Similarity=0.168 Sum_probs=73.3
Q ss_pred ccccccchhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCe
Q psy3029 166 ERFRSMAPMYYRNANAALLVFDITQYH-SFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGT 244 (617)
Q Consensus 166 e~~~~~~~~~~~~ad~iIlV~Dis~~~-S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~ 244 (617)
++...+.+.+++++|++++|+|+.++. ++..+++|+..+.. .++|++||+||+||..+.+ .+.....+..+|++
T Consensus 77 pR~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~ 151 (352)
T PRK12289 77 PRKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQ 151 (352)
T ss_pred ccccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCe
Confidence 455667788899999999999998876 56677888887643 3479999999999964322 12334455678899
Q ss_pred EEEEcCCCCCCHHHHHHHHH
Q psy3029 245 YYETSALQDQGIEDVFLNVS 264 (617)
Q Consensus 245 ~~evSAktg~gI~eLf~~I~ 264 (617)
++.+||+++.|+++|++.|.
T Consensus 152 v~~iSA~tg~GI~eL~~~L~ 171 (352)
T PRK12289 152 PLFISVETGIGLEALLEQLR 171 (352)
T ss_pred EEEEEcCCCCCHHHHhhhhc
Confidence 99999999999999988763
No 240
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.31 E-value=1.9e-11 Score=123.90 Aligned_cols=152 Identities=16% Similarity=0.059 Sum_probs=98.3
Q ss_pred cccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccccc-------ccchhhhccCC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFR-------SMAPMYYRNAN 180 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~-------~~~~~~~~~ad 180 (617)
.++++|+|+||||||+++|++.+......+-. +.....-.+..+..++|++|+||.-.-. ...-...++||
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~seva~y~FT--Tl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~AD 142 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKSEVADYPFT--TLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD 142 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCccccccCce--ecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCC
Confidence 33444449999999999999876422221211 1112222234466889999999863221 23344678999
Q ss_pred EEEEEEeCCChhh-HHHHHHHHHHHHhcC---CC----------------------------------------------
Q psy3029 181 AALLVFDITQYHS-FAAIKTWVKELKRNV---DE---------------------------------------------- 210 (617)
Q Consensus 181 ~iIlV~Dis~~~S-~~~l~~~l~~i~~~~---~~---------------------------------------------- 210 (617)
++++|+|+....+ .+.+.+.+...--.. +.
T Consensus 143 lIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~ 222 (365)
T COG1163 143 LIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRE 222 (365)
T ss_pred EEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEec
Confidence 9999999987665 444443332210000 00
Q ss_pred ----------------CCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 211 ----------------PLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 211 ----------------~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
-+|.++|.||+|+.. .++...+.+.. .++.+||+.+.|+++|.+.|.+.+.
T Consensus 223 dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 223 DVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred CCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 089999999999864 33444444443 8999999999999999999988763
No 241
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.31 E-value=1.5e-11 Score=126.79 Aligned_cols=132 Identities=18% Similarity=0.171 Sum_probs=86.0
Q ss_pred CCCCHHHHHHHHHcCCCCCc----------cCCCcceeEEEEEEEECCeEEEEEEEecCCcccccc--------------
Q psy3029 115 LGVGKTSMVVRYIGKMFSHH----------ISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRS-------------- 170 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~----------~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~-------------- 170 (617)
+|+|||||+|+|++..+... ..+|.+.+.....+..++..+.+.+|||+|......
T Consensus 13 sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~ 92 (276)
T cd01850 13 SGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDD 92 (276)
T ss_pred CCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHH
Confidence 99999999999998876433 345666666666666677788999999999532210
Q ss_pred ------------cchhhhc--cCCEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCeEEEEEECCCCCCccc--cCHHH
Q psy3029 171 ------------MAPMYYR--NANAALLVFDITQYHSFAAI-KTWVKELKRNVDEPLVLCVVGNKTDLESSRE--VNREE 233 (617)
Q Consensus 171 ------------~~~~~~~--~ad~iIlV~Dis~~~S~~~l-~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~--v~~~e 233 (617)
.+...+. .+|+++++++.+.. .+... .+.+..+.. .+|+++|+||+|+....+ ...+.
T Consensus 93 q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~~----~v~vi~VinK~D~l~~~e~~~~k~~ 167 (276)
T cd01850 93 QFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLSK----RVNIIPVIAKADTLTPEELKEFKQR 167 (276)
T ss_pred HHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHhc----cCCEEEEEECCCcCCHHHHHHHHHH
Confidence 1112333 47778888876542 22222 123333322 479999999999965322 23455
Q ss_pred HHHHHHhcCCeEEEEcCC
Q psy3029 234 AFHYSKSIGGTYYETSAL 251 (617)
Q Consensus 234 ~~~~~~~~g~~~~evSAk 251 (617)
+.+.+..+++++|.+...
T Consensus 168 i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 168 IMEDIEEHNIKIYKFPED 185 (276)
T ss_pred HHHHHHHcCCceECCCCC
Confidence 667778889998877654
No 242
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.29 E-value=3.8e-11 Score=123.23 Aligned_cols=107 Identities=16% Similarity=0.139 Sum_probs=74.4
Q ss_pred CCCCHHHHHHHHHcCCCC-C----------------ccC---CCcceeEEEEEEEECCeEEEEEEEecCCcccccccchh
Q psy3029 115 LGVGKTSMVVRYIGKMFS-H----------------HIS---PTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~-~----------------~~~---~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~ 174 (617)
+|+|||||+++|+...-. . .+. ...|.++......+....+++.+|||||+.+|......
T Consensus 11 ~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~~~~~~ 90 (267)
T cd04169 11 PDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFSEDTYR 90 (267)
T ss_pred CCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHHHHHHH
Confidence 999999999999742100 0 000 01233444555566667789999999999988877778
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCC
Q psy3029 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLES 225 (617)
Q Consensus 175 ~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~ 225 (617)
+++.+|++|+|+|+++.... ....++..+.. .++|+++++||+|+..
T Consensus 91 ~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 91 TLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 89999999999999875432 22334444332 3479999999999854
No 243
>CHL00071 tufA elongation factor Tu
Probab=99.29 E-value=3.4e-11 Score=131.14 Aligned_cols=138 Identities=16% Similarity=0.081 Sum_probs=90.2
Q ss_pred CCCCHHHHHHHHHcCCC------CCc--------cCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCC
Q psy3029 115 LGVGKTSMVVRYIGKMF------SHH--------ISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNAN 180 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~------~~~--------~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad 180 (617)
+++|||||+++|++..- ... .....|.++......+..+...+.|+||||+.+|.......+..+|
T Consensus 21 ~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D 100 (409)
T CHL00071 21 VDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMD 100 (409)
T ss_pred CCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHHHHHHHHHhCC
Confidence 99999999999986311 000 1112455555544555555567889999999887766667788999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCe-EEEEEECCCCCCcccc---CHHHHHHHHHhcC-----CeEEEEcCC
Q psy3029 181 AALLVFDITQYHSFAAIKTWVKELKRNVDEPLV-LCVVGNKTDLESSREV---NREEAFHYSKSIG-----GTYYETSAL 251 (617)
Q Consensus 181 ~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iP-vIlVgNK~DL~~~~~v---~~~e~~~~~~~~g-----~~~~evSAk 251 (617)
++++|+|+.....-+ ..+.+..+.. ..+| +|+|+||+|+.+..+. ..+++..+.+..+ ++++.+||.
T Consensus 101 ~~ilVvda~~g~~~q-t~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~ 176 (409)
T CHL00071 101 GAILVVSAADGPMPQ-TKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSAL 176 (409)
T ss_pred EEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchh
Confidence 999999998643222 1223333332 2357 7789999999753321 1234445555544 589999999
Q ss_pred CCCCH
Q psy3029 252 QDQGI 256 (617)
Q Consensus 252 tg~gI 256 (617)
+|.++
T Consensus 177 ~g~n~ 181 (409)
T CHL00071 177 LALEA 181 (409)
T ss_pred hcccc
Confidence 99754
No 244
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.29 E-value=4e-11 Score=122.61 Aligned_cols=156 Identities=18% Similarity=0.166 Sum_probs=100.8
Q ss_pred ccCCCCCCCCHHHHHHHHHcCCCC-CccC-----CCcceeEEEEEEEECCeEEEEEEEecCCccccc----ccchh---h
Q psy3029 109 EANWFWLGVGKTSMVVRYIGKMFS-HHIS-----PTIGASFFTAKINVGENKVKLQVWDTAGQERFR----SMAPM---Y 175 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~~~~~-~~~~-----~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~----~~~~~---~ 175 (617)
+.++|+||+|||||++.+...+.. +.|. |..|+ +.+ ...-.|.+-|+||..+-. .+-.. .
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGv------V~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrH 234 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGV------VRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRH 234 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccE------EEe-cCCCcEEEecCcccccccccCCCccHHHHHH
Confidence 678899999999999999876642 2332 33332 122 233458899999974321 22223 3
Q ss_pred hccCCEEEEEEeCCChhh---HHHHHHHHHHHHhcCC--CCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEE-Ec
Q psy3029 176 YRNANAALLVFDITQYHS---FAAIKTWVKELKRNVD--EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYE-TS 249 (617)
Q Consensus 176 ~~~ad~iIlV~Dis~~~S---~~~l~~~l~~i~~~~~--~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~e-vS 249 (617)
++.+.++++|+|++..+. .++......++..+.. ...|.+||+||+|+....+...+....+.+..+...+. +|
T Consensus 235 IERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~IS 314 (369)
T COG0536 235 IERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLIS 314 (369)
T ss_pred HHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeee
Confidence 557999999999986542 4444444455554432 24689999999996543332223333444444543222 99
Q ss_pred CCCCCCHHHHHHHHHHHHHHhh
Q psy3029 250 ALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 250 Aktg~gI~eLf~~I~~~l~~~~ 271 (617)
|.++.|+++|...+.+.+....
T Consensus 315 a~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 315 ALTREGLDELLRALAELLEETK 336 (369)
T ss_pred hhcccCHHHHHHHHHHHHHHhh
Confidence 9999999999999988876653
No 245
>PRK12288 GTPase RsgA; Reviewed
Probab=99.26 E-value=1.7e-11 Score=130.01 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=67.8
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccc-cCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy3029 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSRE-VNREEAFHYSKSIGGTYYETSALQDQ 254 (617)
Q Consensus 176 ~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~-v~~~e~~~~~~~~g~~~~evSAktg~ 254 (617)
..|+|.+++|+++....++..+++|+..+.. .++|++||+||+||..+.+ ...++....+...+++++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 5789999999999877799999999886653 3478899999999965322 11233344556778999999999999
Q ss_pred CHHHHHHHHH
Q psy3029 255 GIEDVFLNVS 264 (617)
Q Consensus 255 gI~eLf~~I~ 264 (617)
|+++|++.|.
T Consensus 195 GideL~~~L~ 204 (347)
T PRK12288 195 GLEELEAALT 204 (347)
T ss_pred CHHHHHHHHh
Confidence 9999998874
No 246
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.24 E-value=3.8e-11 Score=116.96 Aligned_cols=93 Identities=18% Similarity=0.178 Sum_probs=64.7
Q ss_pred ccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHH-----HhcC
Q psy3029 168 FRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYS-----KSIG 242 (617)
Q Consensus 168 ~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~-----~~~g 242 (617)
+..++..+++++|++|+|+|++++.. .|...+.... .++|+++|+||+|+..... ..+....+. +..+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-GNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-CCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence 46678889999999999999987642 1222222222 3469999999999965332 233333333 2333
Q ss_pred C---eEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 243 G---TYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 243 ~---~~~evSAktg~gI~eLf~~I~~~l 267 (617)
+ .++++||+++.|+++|++.|.+.+
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3 689999999999999999987765
No 247
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.24 E-value=4.1e-11 Score=132.53 Aligned_cols=154 Identities=16% Similarity=0.102 Sum_probs=96.4
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCC-CCc------------cC------------
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMF-SHH------------IS------------ 136 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~-~~~------------~~------------ 136 (617)
...++|+++|. .++|||||+.+|+...- ... ..
T Consensus 25 ~~~~~i~iiGh----------------------vdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~ 82 (474)
T PRK05124 25 KSLLRFLTCGS----------------------VDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLV 82 (474)
T ss_pred cCceEEEEECC----------------------CCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhc
Confidence 45589999999 99999999999974321 000 00
Q ss_pred ------CCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCC
Q psy3029 137 ------PTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE 210 (617)
Q Consensus 137 ------~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~ 210 (617)
...|+++......+......+.||||||+++|.......+..+|++|+|+|+.....-.....| ..+... ..
T Consensus 83 D~~~eEr~rgiTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~l-g~ 160 (474)
T PRK05124 83 DGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLL-GI 160 (474)
T ss_pred cCChHHhhcCCCeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHh-CC
Confidence 0123333333334445566899999999988865555557899999999999765321111111 111111 11
Q ss_pred CCeEEEEEECCCCCCccccCHH----HHHHHHHhcC----CeEEEEcCCCCCCHHHHH
Q psy3029 211 PLVLCVVGNKTDLESSREVNRE----EAFHYSKSIG----GTYYETSALQDQGIEDVF 260 (617)
Q Consensus 211 ~iPvIlVgNK~DL~~~~~v~~~----e~~~~~~~~g----~~~~evSAktg~gI~eLf 260 (617)
.|+|||+||+|+....+...+ +...+.+..+ ++++++||++|.|++++-
T Consensus 161 -~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 161 -KHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred -CceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 378899999998643221111 2223333333 689999999999998754
No 248
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.23 E-value=1e-10 Score=130.50 Aligned_cols=106 Identities=16% Similarity=0.184 Sum_probs=74.2
Q ss_pred CCCCHHHHHHHHHc--CCCC---------------Cc---cCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchh
Q psy3029 115 LGVGKTSMVVRYIG--KMFS---------------HH---ISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174 (617)
Q Consensus 115 ~nVGKSSLinrl~~--~~~~---------------~~---~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~ 174 (617)
+++|||||+++|+. +... .. .....|.++......+..+.+.+.+|||||+.+|......
T Consensus 19 ~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~df~~~~~~ 98 (526)
T PRK00741 19 PDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHEDFSEDTYR 98 (526)
T ss_pred CCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchhhHHHHHH
Confidence 99999999999963 1100 00 0112344444555556666788999999999998887788
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCC
Q psy3029 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLE 224 (617)
Q Consensus 175 ~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~ 224 (617)
+++.+|++|+|+|+++.... ....++..... .++|+++++||+|+.
T Consensus 99 ~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 99 TLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred HHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence 89999999999999875322 22344444333 357999999999984
No 249
>PRK13351 elongation factor G; Reviewed
Probab=99.22 E-value=1.2e-10 Score=135.05 Aligned_cols=107 Identities=20% Similarity=0.224 Sum_probs=74.2
Q ss_pred CCCCHHHHHHHHHcCCC-------------CCccCC---CcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhcc
Q psy3029 115 LGVGKTSMVVRYIGKMF-------------SHHISP---TIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~-------------~~~~~~---t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ 178 (617)
.++|||||+++|+...- ...+.+ ..+.++......+....+.+.+|||||+.+|...+..+++.
T Consensus 17 ~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~ 96 (687)
T PRK13351 17 IDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRV 96 (687)
T ss_pred CCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHh
Confidence 99999999999984210 000000 12222222223333456789999999999998888999999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCC
Q psy3029 179 ANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLES 225 (617)
Q Consensus 179 ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~ 225 (617)
+|++|+|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 97 aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 97 LDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred CCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 9999999999987666554434 33333 3479999999999863
No 250
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.22 E-value=8e-11 Score=128.07 Aligned_cols=142 Identities=18% Similarity=0.165 Sum_probs=88.5
Q ss_pred CCCCHHHHHHHHHcCCC--CC-----------------------------ccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 115 LGVGKTSMVVRYIGKMF--SH-----------------------------HISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~--~~-----------------------------~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
.++|||||+.+|+...- .. ......|.+++.....+.....++.|||||
T Consensus 9 vd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~~~liDtP 88 (406)
T TIGR02034 9 VDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRKFIVADTP 88 (406)
T ss_pred CCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeEEEEEeCC
Confidence 99999999999963210 00 000112333444444444556689999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccC----HHHHHHHHH
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVN----REEAFHYSK 239 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~----~~e~~~~~~ 239 (617)
|+++|.......+..+|++|+|+|+.....-+....| ..+... .. .++|||+||+|+....... .++...+.+
T Consensus 89 Gh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~-~~-~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~ 165 (406)
T TIGR02034 89 GHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLL-GI-RHVVLAVNKMDLVDYDEEVFENIKKDYLAFAE 165 (406)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHc-CC-CcEEEEEEecccccchHHHHHHHHHHHHHHHH
Confidence 9998876666678899999999998765422221112 122221 11 3688999999986422111 122233344
Q ss_pred hcC---CeEEEEcCCCCCCHHHH
Q psy3029 240 SIG---GTYYETSALQDQGIEDV 259 (617)
Q Consensus 240 ~~g---~~~~evSAktg~gI~eL 259 (617)
..+ ++++++||++|.|++++
T Consensus 166 ~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 166 QLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HcCCCCccEEEeecccCCCCccc
Confidence 444 36999999999999864
No 251
>PLN03126 Elongation factor Tu; Provisional
Probab=99.21 E-value=1.8e-10 Score=127.01 Aligned_cols=138 Identities=17% Similarity=0.063 Sum_probs=90.1
Q ss_pred CCCCHHHHHHHHHcC------CCCC--------ccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCC
Q psy3029 115 LGVGKTSMVVRYIGK------MFSH--------HISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNAN 180 (617)
Q Consensus 115 ~nVGKSSLinrl~~~------~~~~--------~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad 180 (617)
+++|||||+++|+.. .... ......|.++......+......+.|+|+||+++|.......+..+|
T Consensus 90 vd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD 169 (478)
T PLN03126 90 VDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMD 169 (478)
T ss_pred CCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCC
Confidence 999999999999852 1111 11223455554444445445568899999999988776667778899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCe-EEEEEECCCCCCcccc---CHHHHHHHHHhc-----CCeEEEEcCC
Q psy3029 181 AALLVFDITQYHSFAAIKTWVKELKRNVDEPLV-LCVVGNKTDLESSREV---NREEAFHYSKSI-----GGTYYETSAL 251 (617)
Q Consensus 181 ~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iP-vIlVgNK~DL~~~~~v---~~~e~~~~~~~~-----g~~~~evSAk 251 (617)
++++|+|+.+...-.. .+++..+... .+| +|+++||+|+.+..+. ..+++..+.+.. .++++.+||.
T Consensus 170 ~ailVVda~~G~~~qt-~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~ 245 (478)
T PLN03126 170 GAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSAL 245 (478)
T ss_pred EEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcc
Confidence 9999999887543222 3344444332 356 7789999999753221 112444555554 3579999999
Q ss_pred CCCCH
Q psy3029 252 QDQGI 256 (617)
Q Consensus 252 tg~gI 256 (617)
++.++
T Consensus 246 ~g~n~ 250 (478)
T PLN03126 246 LALEA 250 (478)
T ss_pred ccccc
Confidence 98643
No 252
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.21 E-value=1e-10 Score=134.29 Aligned_cols=151 Identities=16% Similarity=0.100 Sum_probs=94.2
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCc-------------cC-------------
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHH-------------IS------------- 136 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~-------------~~------------- 136 (617)
..++|+++|. +++|||||+++|+...-.-. ..
T Consensus 23 ~~~~i~iiGh----------------------~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d 80 (632)
T PRK05506 23 SLLRFITCGS----------------------VDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVD 80 (632)
T ss_pred CeeEEEEECC----------------------CCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeecc
Confidence 4478999999 99999999999985321000 00
Q ss_pred -----CCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCC
Q psy3029 137 -----PTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEP 211 (617)
Q Consensus 137 -----~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~ 211 (617)
...|.++......+......+.|+||||+++|.......+..+|++|+|+|+.....-... +.+..+... . .
T Consensus 81 ~~~~E~~rg~Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~-e~~~~~~~~-~-~ 157 (632)
T PRK05506 81 GLAAEREQGITIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR-RHSFIASLL-G-I 157 (632)
T ss_pred CCHHHHhCCcCceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH-HHHHHHHHh-C-C
Confidence 0122333333333444556788999999988765555567899999999999765322111 111222222 1 1
Q ss_pred CeEEEEEECCCCCCccccCH----HHHHHHHHhcCC---eEEEEcCCCCCCHHH
Q psy3029 212 LVLCVVGNKTDLESSREVNR----EEAFHYSKSIGG---TYYETSALQDQGIED 258 (617)
Q Consensus 212 iPvIlVgNK~DL~~~~~v~~----~e~~~~~~~~g~---~~~evSAktg~gI~e 258 (617)
.++|||+||+|+........ ++...+.+.+++ +++++||++|.|+++
T Consensus 158 ~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 158 RHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred CeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 47889999999864211111 223334445554 699999999999985
No 253
>PRK00049 elongation factor Tu; Reviewed
Probab=99.21 E-value=2.3e-10 Score=124.12 Aligned_cols=137 Identities=15% Similarity=0.098 Sum_probs=87.7
Q ss_pred CCCCHHHHHHHHHcCCCC---C-----------ccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCC
Q psy3029 115 LGVGKTSMVVRYIGKMFS---H-----------HISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNAN 180 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~---~-----------~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad 180 (617)
.++|||||+++|++.... . ......|.+.......+......+.|+||||+.+|.......+..+|
T Consensus 21 vd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD 100 (396)
T PRK00049 21 VDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMD 100 (396)
T ss_pred CCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCC
Confidence 999999999999862100 0 01113455555555555555667899999999887766667788999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEE-EEEECCCCCCcccc---CHHHHHHHHHhcC-----CeEEEEcCC
Q psy3029 181 AALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLC-VVGNKTDLESSREV---NREEAFHYSKSIG-----GTYYETSAL 251 (617)
Q Consensus 181 ~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvI-lVgNK~DL~~~~~v---~~~e~~~~~~~~g-----~~~~evSAk 251 (617)
++++|+|+.....-. ..+++..+.. ..+|++ +++||+|+....+. ..+++..+....+ ++++.+||+
T Consensus 101 ~~llVVDa~~g~~~q-t~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~ 176 (396)
T PRK00049 101 GAILVVSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSAL 176 (396)
T ss_pred EEEEEEECCCCCchH-HHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecc
Confidence 999999998753222 2233333333 236765 58999999643221 1123334444433 589999999
Q ss_pred CCCC
Q psy3029 252 QDQG 255 (617)
Q Consensus 252 tg~g 255 (617)
++.+
T Consensus 177 ~g~~ 180 (396)
T PRK00049 177 KALE 180 (396)
T ss_pred cccC
Confidence 8753
No 254
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.20 E-value=1.2e-10 Score=104.01 Aligned_cols=98 Identities=20% Similarity=0.209 Sum_probs=59.6
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEE--EEEEECCeEEEEEEEecCCcccc---------cccchhhhccCCEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFT--AKINVGENKVKLQVWDTAGQERF---------RSMAPMYYRNANAAL 183 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~--~~i~~~~~~~~l~i~Dt~G~e~~---------~~~~~~~~~~ad~iI 183 (617)
+|||||||+|+|++.+. .......+.+... ..+.+++. .+.++||||...- .......+..+|+++
T Consensus 8 ~~~GKSTlin~l~~~~~-~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii 84 (116)
T PF01926_consen 8 PNVGKSTLINALTGKKL-AKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLII 84 (116)
T ss_dssp TTSSHHHHHHHHHTSTS-SEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEE
T ss_pred CCCCHHHHHHHHhcccc-ccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEE
Confidence 99999999999998542 2222222222222 33344444 4579999997421 111233347899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEEC
Q psy3029 184 LVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNK 220 (617)
Q Consensus 184 lV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK 220 (617)
+|+|..++.. ....+++..+. ...|+++|+||
T Consensus 85 ~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 85 YVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp EEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred EEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999877422 22223333442 34699999998
No 255
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.20 E-value=7e-11 Score=113.19 Aligned_cols=163 Identities=19% Similarity=0.158 Sum_probs=99.3
Q ss_pred cccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEE
Q psy3029 167 RFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYY 246 (617)
Q Consensus 167 ~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~ 246 (617)
+........++++|++++|+|++++...... .++..+ .+.|+++|+||+|+..+.. .....++....+..++
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi 79 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVL 79 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEE
Confidence 3444567778899999999999876532211 122221 1258999999999964322 1222234444456789
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHhhhcccccccccccccCCccCCCCCCcccccCCCCCCCCCCchhhhheeeeccCCCC
Q psy3029 247 ETSALQDQGIEDVFLNVSKGLICLSQESLHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLTEAETAKFVVGLSINS 326 (617)
Q Consensus 247 evSAktg~gI~eLf~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ss~~~~~~~~~~~~v~ivG~~~~s 326 (617)
.+||+++.|++++.+.|...+........ ........+++++|.+
T Consensus 80 ~iSa~~~~gi~~L~~~l~~~l~~~~~~~~--------------------------------~~~~~~~~~~~~~G~~--- 124 (171)
T cd01856 80 FVNAKSGKGVKKLLKAAKKLLKDIEKLKA--------------------------------KGLLPRGIRAMVVGIP--- 124 (171)
T ss_pred EEECCCcccHHHHHHHHHHHHHHHhhhhh--------------------------------cccCCCCeEEEEECCC---
Confidence 99999999999999999887643110000 0000112456666666
Q ss_pred CCCcceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecCC
Q psy3029 327 RVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTGL 387 (617)
Q Consensus 327 ~~~~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~ 387 (617)
+||||++++++....+... .+..|..+....+.++ ..+.+--++|+
T Consensus 125 -------------~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 125 -------------NVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred -------------CCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 9999999999998776422 2333444444445554 33445445554
No 256
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.19 E-value=1.1e-10 Score=104.52 Aligned_cols=106 Identities=28% Similarity=0.324 Sum_probs=77.3
Q ss_pred CCCCHHHHHHHHHcCCCCCccC-CCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhh
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHIS-PTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHS 193 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~-~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S 193 (617)
.|||||+|+.|+....+...+. ++++ +..+...+.+.++.+++||+.++..+
T Consensus 9 ~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v~~~~~~~s 61 (124)
T smart00010 9 SGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQCWRVDDRDS 61 (124)
T ss_pred CChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEEEEccCHHH
Confidence 9999999999998877654443 4433 22233456778899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHH
Q psy3029 194 FAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIE 257 (617)
Q Consensus 194 ~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~ 257 (617)
+..+ |+..+....+.++|.++++||.|+..+..+..++.. .++++|++++.|+.
T Consensus 62 ~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 62 ADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred HHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence 8766 887776655566889999999998543344433333 34568999999984
No 257
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.18 E-value=6.2e-11 Score=121.89 Aligned_cols=147 Identities=18% Similarity=0.115 Sum_probs=87.7
Q ss_pred cCCCCCCCCHHHHHHHHHcCCCCC----ccC--CC----------cceeEEEEEEEECCeEEEEEEEecCCcccccccch
Q psy3029 110 ANWFWLGVGKTSMVVRYIGKMFSH----HIS--PT----------IGASFFTAKINVGENKVKLQVWDTAGQERFRSMAP 173 (617)
Q Consensus 110 ~i~G~~nVGKSSLinrl~~~~~~~----~~~--~t----------~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~ 173 (617)
+|+|.+|+|||||+++|+...-.. ... .+ .+.+.......+....+.+.+|||||..++...+.
T Consensus 3 ~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~ 82 (268)
T cd04170 3 ALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGETR 82 (268)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHHHH
Confidence 344449999999999997432110 000 00 01112222223333457899999999988877788
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEE--EEcCC
Q psy3029 174 MYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYY--ETSAL 251 (617)
Q Consensus 174 ~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~--evSAk 251 (617)
.++..+|++++|+|+++........-| ..+.. .++|+++|+||+|+.... ..+....+...++.+++ .+...
T Consensus 83 ~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ip~~ 156 (268)
T cd04170 83 AALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQLPIG 156 (268)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEEeccc
Confidence 899999999999999886544332222 23332 347999999999986432 12223334444555433 44556
Q ss_pred CCCCHHHHHHH
Q psy3029 252 QDQGIEDVFLN 262 (617)
Q Consensus 252 tg~gI~eLf~~ 262 (617)
++.++..+.+.
T Consensus 157 ~~~~~~~~vd~ 167 (268)
T cd04170 157 EGDDFKGVVDL 167 (268)
T ss_pred CCCceeEEEEc
Confidence 66665444433
No 258
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.18 E-value=1.3e-10 Score=119.43 Aligned_cols=110 Identities=18% Similarity=0.122 Sum_probs=74.9
Q ss_pred CCCCCCCHHHHHHHHHcC--CCC--Cc------------cCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhh
Q psy3029 112 WFWLGVGKTSMVVRYIGK--MFS--HH------------ISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175 (617)
Q Consensus 112 ~G~~nVGKSSLinrl~~~--~~~--~~------------~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~ 175 (617)
+|.+|+|||||+++|+.. ... .. .....|.++......+.....++.+|||||+.++...+..+
T Consensus 5 vGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~ 84 (270)
T cd01886 5 IAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVERS 84 (270)
T ss_pred EcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 333999999999999731 100 00 11133455554445554556789999999998888888889
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCC
Q psy3029 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLES 225 (617)
Q Consensus 176 ~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~ 225 (617)
++.+|++|+|+|+.+...-.. ...+..+.. .++|+++++||+|+..
T Consensus 85 l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 85 LRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 999999999999987542221 233333333 3479999999999864
No 259
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.17 E-value=2e-10 Score=114.55 Aligned_cols=79 Identities=23% Similarity=0.229 Sum_probs=58.1
Q ss_pred CeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCC-CccccC
Q psy3029 152 ENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLE-SSREVN 230 (617)
Q Consensus 152 ~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~-~~~~v~ 230 (617)
+..+.+.||||||+++|......+++.+|++|+|+|+.+..+..... .+..+.. ..+|++||+||+|+. .+..++
T Consensus 70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~-~l~~~~~---~~~p~ilviNKiD~~~~e~~~~ 145 (222)
T cd01885 70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET-VLRQALK---ERVKPVLVINKIDRLILELKLS 145 (222)
T ss_pred CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECCCcchhhhcCC
Confidence 34788999999999999999999999999999999999876554322 2222222 346899999999975 223344
Q ss_pred HHHH
Q psy3029 231 REEA 234 (617)
Q Consensus 231 ~~e~ 234 (617)
.+++
T Consensus 146 ~~~~ 149 (222)
T cd01885 146 PEEA 149 (222)
T ss_pred HHHH
Confidence 4433
No 260
>PRK00098 GTPase RsgA; Reviewed
Probab=99.17 E-value=4.2e-11 Score=124.94 Aligned_cols=84 Identities=21% Similarity=0.238 Sum_probs=65.1
Q ss_pred hccCCEEEEEEeCCChhhH-HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy3029 176 YRNANAALLVFDITQYHSF-AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQ 254 (617)
Q Consensus 176 ~~~ad~iIlV~Dis~~~S~-~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~ 254 (617)
..++|++++|+|+.++.++ ..+++|+..+.. .++|++||+||+||..+.+ ..++..++++.++++++++||+++.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~ 153 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE 153 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 4899999999999887654 445788877654 3479999999999963322 1233445666778999999999999
Q ss_pred CHHHHHHHH
Q psy3029 255 GIEDVFLNV 263 (617)
Q Consensus 255 gI~eLf~~I 263 (617)
|+++|++.|
T Consensus 154 gi~~L~~~l 162 (298)
T PRK00098 154 GLDELKPLL 162 (298)
T ss_pred cHHHHHhhc
Confidence 999998765
No 261
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.17 E-value=3.7e-10 Score=110.57 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=86.7
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccc--------cc---hhhhccCCEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRS--------MA---PMYYRNANAAL 183 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~--------~~---~~~~~~ad~iI 183 (617)
+|||||||+|.|++...........+.+..............+.++||||...... +. .....+.|++|
T Consensus 9 ~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~il 88 (196)
T cd01852 9 TGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFL 88 (196)
T ss_pred CCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEE
Confidence 99999999999998764322211122222211111111345789999999754321 11 11234789999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCC--CCeEEEEEECCCCCCccccC------HHHHHHHHHhcCCeEEEEc-----C
Q psy3029 184 LVFDITQYHSFAAIKTWVKELKRNVDE--PLVLCVVGNKTDLESSREVN------REEAFHYSKSIGGTYYETS-----A 250 (617)
Q Consensus 184 lV~Dis~~~S~~~l~~~l~~i~~~~~~--~iPvIlVgNK~DL~~~~~v~------~~e~~~~~~~~g~~~~evS-----A 250 (617)
+|+++.+ .+-.+ ...+..+.+.... -.++++|.|++|......+. ....+.+.+..+-.++.++ +
T Consensus 89 lVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~ 166 (196)
T cd01852 89 LVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGE 166 (196)
T ss_pred EEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcc
Confidence 9999876 32221 2233333333221 13788999999965432111 1334445555555565555 4
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy3029 251 LQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 251 ktg~gI~eLf~~I~~~l~~ 269 (617)
..+.++++|++.|.+.+..
T Consensus 167 ~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 167 EQEQQVKELLAKVESMVKE 185 (196)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 5577888888888776644
No 262
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.17 E-value=3.2e-10 Score=124.53 Aligned_cols=140 Identities=18% Similarity=0.158 Sum_probs=93.6
Q ss_pred CCCCHHHHHHHHHcCCC--C-------------------------C--ccCCCcceeEEEEEEEECCeEEEEEEEecCCc
Q psy3029 115 LGVGKTSMVVRYIGKMF--S-------------------------H--HISPTIGASFFTAKINVGENKVKLQVWDTAGQ 165 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~--~-------------------------~--~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~ 165 (617)
.++|||||+-+|+...- . + ......|.++......+......+.|+|+||+
T Consensus 16 vd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh 95 (447)
T PLN00043 16 VDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGH 95 (447)
T ss_pred CCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEEEEEEECCCH
Confidence 99999999999863110 0 0 00112344444444455666788999999999
Q ss_pred ccccccchhhhccCCEEEEEEeCCChhhHH-------HHHHHHHHHHhcCCCCC-eEEEEEECCCCCCccc------cCH
Q psy3029 166 ERFRSMAPMYYRNANAALLVFDITQYHSFA-------AIKTWVKELKRNVDEPL-VLCVVGNKTDLESSRE------VNR 231 (617)
Q Consensus 166 e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~-------~l~~~l~~i~~~~~~~i-PvIlVgNK~DL~~~~~------v~~ 231 (617)
++|.......+..+|++|+|+|+++. .|+ ...+.+..+.. ..+ ++||++||+|+..... ...
T Consensus 96 ~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~~~~~~~~~~~i~ 171 (447)
T PLN00043 96 RDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATTPKYSKARYDEIV 171 (447)
T ss_pred HHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCchhhhHHHHHHHH
Confidence 99998888889999999999999873 222 22232332222 224 5788999999852110 113
Q ss_pred HHHHHHHHhcC-----CeEEEEcCCCCCCHHH
Q psy3029 232 EEAFHYSKSIG-----GTYYETSALQDQGIED 258 (617)
Q Consensus 232 ~e~~~~~~~~g-----~~~~evSAktg~gI~e 258 (617)
+++..+++..| ++|+++||++|+|+.+
T Consensus 172 ~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 172 KEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred HHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 45667777666 5799999999999864
No 263
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.16 E-value=5.2e-10 Score=124.97 Aligned_cols=106 Identities=16% Similarity=0.167 Sum_probs=74.7
Q ss_pred CCCCHHHHHHHHHc-CCCCC-------------------ccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchh
Q psy3029 115 LGVGKTSMVVRYIG-KMFSH-------------------HISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174 (617)
Q Consensus 115 ~nVGKSSLinrl~~-~~~~~-------------------~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~ 174 (617)
+++|||||+++|+. ..... ......|.++......+..+.+.+.+|||||+.+|......
T Consensus 20 ~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~df~~~~~~ 99 (527)
T TIGR00503 20 PDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYR 99 (527)
T ss_pred CCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhhHHHHHHH
Confidence 99999999999862 11100 01123455555556666777889999999999988877777
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCC
Q psy3029 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLE 224 (617)
Q Consensus 175 ~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~ 224 (617)
++..+|++|+|+|+.+... .....++..+.. .++|+++++||+|+.
T Consensus 100 ~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 100 TLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred HHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 8999999999999987421 122344443332 347999999999984
No 264
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.16 E-value=7.3e-11 Score=122.47 Aligned_cols=84 Identities=14% Similarity=0.185 Sum_probs=67.4
Q ss_pred hhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCC
Q psy3029 175 YYRNANAALLVFDITQYH-SFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQD 253 (617)
Q Consensus 175 ~~~~ad~iIlV~Dis~~~-S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg 253 (617)
.+.++|++++|+|+.++. ++..+++|+..+.. .++|+++|+||+||..+.+ ......++...+++++.+||+++
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~g 149 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKTG 149 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCCC
Confidence 488999999999999988 88899999987765 3478999999999965421 12233445567899999999999
Q ss_pred CCHHHHHHHH
Q psy3029 254 QGIEDVFLNV 263 (617)
Q Consensus 254 ~gI~eLf~~I 263 (617)
.|+++|+..|
T Consensus 150 ~gi~~L~~~L 159 (287)
T cd01854 150 EGLDELREYL 159 (287)
T ss_pred ccHHHHHhhh
Confidence 9999988765
No 265
>KOG0462|consensus
Probab=99.15 E-value=2.2e-10 Score=122.86 Aligned_cols=150 Identities=17% Similarity=0.184 Sum_probs=106.3
Q ss_pred CCCCHHHHHHHHHcCCC-----------CC--ccCCCcceeEEEEEEEEC---CeEEEEEEEecCCcccccccchhhhcc
Q psy3029 115 LGVGKTSMVVRYIGKMF-----------SH--HISPTIGASFFTAKINVG---ENKVKLQVWDTAGQERFRSMAPMYYRN 178 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~-----------~~--~~~~t~g~~~~~~~i~~~---~~~~~l~i~Dt~G~e~~~~~~~~~~~~ 178 (617)
--=|||||..||+...- .+ ......|+++..+...+. +..+.++++||||+-+|.......+.-
T Consensus 69 VDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaa 148 (650)
T KOG0462|consen 69 VDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAA 148 (650)
T ss_pred ecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhh
Confidence 67799999999963210 00 122345666665554443 455999999999999999888888999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccC-HHHHHHHHHhcCCeEEEEcCCCCCCHH
Q psy3029 179 ANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVN-REEAFHYSKSIGGTYYETSALQDQGIE 257 (617)
Q Consensus 179 ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~-~~e~~~~~~~~g~~~~evSAktg~gI~ 257 (617)
|+++|||+|+....--+.+..++..++ .++.+|.|+||+|+...+.-. ..+..+++.....+++.+|||+|.|++
T Consensus 149 c~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~ 224 (650)
T KOG0462|consen 149 CDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVE 224 (650)
T ss_pred cCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHH
Confidence 999999999988654454444443333 346789999999997543211 122333333334489999999999999
Q ss_pred HHHHHHHHHHH
Q psy3029 258 DVFLNVSKGLI 268 (617)
Q Consensus 258 eLf~~I~~~l~ 268 (617)
++++.|++.+.
T Consensus 225 ~lL~AII~rVP 235 (650)
T KOG0462|consen 225 ELLEAIIRRVP 235 (650)
T ss_pred HHHHHHHhhCC
Confidence 99999998774
No 266
>PLN03127 Elongation factor Tu; Provisional
Probab=99.15 E-value=5.7e-10 Score=122.40 Aligned_cols=158 Identities=17% Similarity=0.110 Sum_probs=97.8
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcC------CCCC--------ccCCCcceeEEEEEE
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGK------MFSH--------HISPTIGASFFTAKI 148 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~------~~~~--------~~~~t~g~~~~~~~i 148 (617)
..++|+++|. .++|||||+++|++. .... ......|.++.....
T Consensus 60 ~~~ni~iiGh----------------------vd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~ 117 (447)
T PLN03127 60 PHVNVGTIGH----------------------VDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHV 117 (447)
T ss_pred ceEEEEEECc----------------------CCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEE
Confidence 3467888888 999999999999721 1000 011124555555555
Q ss_pred EECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCe-EEEEEECCCCCCcc
Q psy3029 149 NVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLV-LCVVGNKTDLESSR 227 (617)
Q Consensus 149 ~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iP-vIlVgNK~DL~~~~ 227 (617)
.+......+.|+||||+.+|.......+..+|++++|+|+.+...-+. .+.+..+.. ..+| +|+|+||+|+.++.
T Consensus 118 ~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~---~gip~iIvviNKiDlv~~~ 193 (447)
T PLN03127 118 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVVFLNKVDVVDDE 193 (447)
T ss_pred EEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEEEeeccCCHH
Confidence 666666788999999998876655556678999999999876532221 222233332 2367 57889999997532
Q ss_pred ccCH---HHHHHHHHhc-----CCeEEEEcCC---CCCC-------HHHHHHHHHHH
Q psy3029 228 EVNR---EEAFHYSKSI-----GGTYYETSAL---QDQG-------IEDVFLNVSKG 266 (617)
Q Consensus 228 ~v~~---~e~~~~~~~~-----g~~~~evSAk---tg~g-------I~eLf~~I~~~ 266 (617)
+... ++..++...+ .++++.+||. +|.| +.+|++.|...
T Consensus 194 ~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 194 ELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 2111 1222333332 2578888876 4555 55666665543
No 267
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.14 E-value=3.1e-10 Score=107.08 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=79.3
Q ss_pred hhhccCCEEEEEEeCCChhh--HHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCC
Q psy3029 174 MYYRNANAALLVFDITQYHS--FAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSAL 251 (617)
Q Consensus 174 ~~~~~ad~iIlV~Dis~~~S--~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAk 251 (617)
..++++|++++|+|++++.. ...+.+++.. . ...+|+++|+||+|+.++.+. .+....+.+.+....+.+||+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~---~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~ 78 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKK---E-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASIN 78 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHh---c-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecc
Confidence 35778999999999998743 2333433332 2 233699999999999643321 111222222222335789999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcccccccccccccCCccCCCCCCcccccCCCCCCCCCCchhhhheeeeccCCCCCCCcc
Q psy3029 252 QDQGIEDVFLNVSKGLICLSQESLHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLTEAETAKFVVGLSINSRVPNC 331 (617)
Q Consensus 252 tg~gI~eLf~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ss~~~~~~~~~~~~v~ivG~~~~s~~~~~ 331 (617)
++.|++++++.|...+.... .....+++++|.|
T Consensus 79 ~~~~~~~L~~~l~~~~~~~~---------------------------------------~~~~~~v~~~G~~-------- 111 (157)
T cd01858 79 NPFGKGSLIQLLRQFSKLHS---------------------------------------DKKQISVGFIGYP-------- 111 (157)
T ss_pred ccccHHHHHHHHHHHHhhhc---------------------------------------cccceEEEEEeCC--------
Confidence 99999999998866432100 0012457778877
Q ss_pred eeeeeeecccccccceeccccCcc
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMF 355 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f 355 (617)
|||||++++.+.+...
T Consensus 112 --------nvGKStliN~l~~~~~ 127 (157)
T cd01858 112 --------NVGKSSIINTLRSKKV 127 (157)
T ss_pred --------CCChHHHHHHHhcCCc
Confidence 9999999999987543
No 268
>KOG0077|consensus
Probab=99.13 E-value=9.5e-11 Score=107.70 Aligned_cols=145 Identities=18% Similarity=0.238 Sum_probs=103.4
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
.|+|||||++.|..++ ...+.||.-.+-....+ ..++|..+|.+|+..-...++.|+..+|++++.+|+.+.+-|
T Consensus 29 DNAGKTTLLHMLKdDr-l~qhvPTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~ 103 (193)
T KOG0077|consen 29 DNAGKTTLLHMLKDDR-LGQHVPTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERF 103 (193)
T ss_pred cCCchhhHHHHHcccc-ccccCCCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHh
Confidence 9999999999998887 45566665443222222 568899999999998888999999999999999999999888
Q ss_pred HHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHH------HHHHhcC-----------CeEEEEcCCCCCCH
Q psy3029 195 AAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAF------HYSKSIG-----------GTYYETSALQDQGI 256 (617)
Q Consensus 195 ~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~------~~~~~~g-----------~~~~evSAktg~gI 256 (617)
.+...-++.+.... -..+|++|.+||+|..... ..++.. .++...+ +.+|.||...+.|-
T Consensus 104 ~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy 181 (193)
T KOG0077|consen 104 AESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGY 181 (193)
T ss_pred HHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCcc
Confidence 87765544443222 2348999999999986542 233221 1121111 25788888888887
Q ss_pred HHHHHHHHHH
Q psy3029 257 EDVFLNVSKG 266 (617)
Q Consensus 257 ~eLf~~I~~~ 266 (617)
-+.|.|+...
T Consensus 182 ~e~fkwl~qy 191 (193)
T KOG0077|consen 182 GEGFKWLSQY 191 (193)
T ss_pred ceeeeehhhh
Confidence 7777776543
No 269
>KOG2375|consensus
Probab=99.13 E-value=7.3e-12 Score=139.48 Aligned_cols=177 Identities=15% Similarity=0.121 Sum_probs=158.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCchHhHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcc
Q psy3029 429 PVRSRGGPDRLAINPEGVYCNARFMQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTV 508 (617)
Q Consensus 429 ~~~~~~~~~~~~~~~~gv~~n~r~~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~ 508 (617)
+..-.++..+....|.|+|.+.|+.++.+.|++.+|++.++|++.|+|.|+....-++.++.-+|++......+++.++|
T Consensus 204 l~~~~kGw~Qf~v~f~~~~~f~v~stFde~ly~tk~d~~~kn~e~~e~a~Ria~ei~~~at~~~h~~ae~~~~gpd~~~I 283 (756)
T KOG2375|consen 204 LENDNKGWDQFEVNFHGSKKFNVMSTFDEELYTTKLDKKVKNYEAYEGAERIAREIESLATSDAHHLAERRLGGPDREDI 283 (756)
T ss_pred cccccCCCCccchhhhhhhhhceeeeeehhhhcceecccCCchhhHHHHHHhhccccccchhHHHHhhccCCCCcchhhh
Confidence 34455667777777999999999999999999999999999999999999999999999999999998877888999999
Q ss_pred cceeeeecCceeEEEeccccccccccCcccchhhhc---ccCCCCCCcccccCcCCC---------------CCCCCCCc
Q psy3029 509 VDMKIFKLDDIVRIEAKNVDLEYAVRDTFATDTAIS---KFNGVIGERELEPWAEDM---------------LGPGGDDD 570 (617)
Q Consensus 509 ~~~l~~~~~d~v~~~~~~v~~~~~~~~~f~TDt~IS---~~n~~~~ereL~~W~p~~---------------~~~~~~d~ 570 (617)
.+.++|...|.......|.+.+++.++.| +|..|+ ++|+..+++.|++|.... .+|.+.++
T Consensus 284 ~ee~~ys~sd~~~~r~~~~~~~~~~qd~~-~d~i~~~~~kvn~~~k~~~~~~~~sgk~~~N~s~~a~~~d~sn~~~~n~~ 362 (756)
T KOG2375|consen 284 EEEDLYSRSDGPGVRFENEDFNEAMQDKR-NDKIAPLDQKVNDSTKSKALERWNSGKLLENASSYATPADASNGWDENSM 362 (756)
T ss_pred hhhhhcccccccchhhhhhhhhHHHHhhh-ccccccccCCCCccccccccccccccccccccccccccchhhcCCCcccc
Confidence 99999999999999999999999999988 999996 688999999999999843 15556689
Q ss_pred chhhhccccCCCCccCCccccccccCC--CCCchHHHH
Q psy3029 571 FELDQMCNHNVGTATSSIKMFIFPLIQ--VAPYTMEES 606 (617)
Q Consensus 571 f~~ne~~~~~~st~de~l~~yt~~l~~--~~~~~~~~~ 606 (617)
|-.|+...+++++||..+..|+.+++| .+-|+.++.
T Consensus 363 ~q~n~kn~~~~s~~~s~~~~~~~~sek~~se~~~qr~~ 400 (756)
T KOG2375|consen 363 FQVNSKNYKSKSEVESSDMSTKKPSEKNESESFEQRKK 400 (756)
T ss_pred cccccccccccccccccccccccccccccchhhhhhhh
Confidence 999999999999999999999999999 555555554
No 270
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.13 E-value=7.5e-10 Score=110.63 Aligned_cols=149 Identities=22% Similarity=0.311 Sum_probs=90.8
Q ss_pred CCCCHHHHHHHHHcCCCCCcc---CCCcceeEEEEEEEECCeEEEEEEEecCCccccc-----ccchhhhccCCEEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHI---SPTIGASFFTAKINVGENKVKLQVWDTAGQERFR-----SMAPMYYRNANAALLVF 186 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~---~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~-----~~~~~~~~~ad~iIlV~ 186 (617)
.++||||+.+-+..+..+... .+|..++ ...+. ....+.+++||+||+..+. ......++++.++|+|+
T Consensus 8 ~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve--~~~v~-~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~ 84 (232)
T PF04670_consen 8 RRSGKTSIRSVIFHKYSPRDTLRLEPTIDVE--KSHVR-FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVF 84 (232)
T ss_dssp TTSSHHHHHHHHHS---GGGGGG-----SEE--EEEEE-CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEE
T ss_pred CCCChhhHHHHHHcCCCchhccccCCcCCce--EEEEe-cCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEE
Confidence 999999999988876432222 2444333 22222 2345689999999996543 34577889999999999
Q ss_pred eCCChhh---HHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccc--c----CHHHHHHHHHhcC---CeEEEEcCCCCC
Q psy3029 187 DITQYHS---FAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSRE--V----NREEAFHYSKSIG---GTYYETSALQDQ 254 (617)
Q Consensus 187 Dis~~~S---~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~--v----~~~e~~~~~~~~g---~~~~evSAktg~ 254 (617)
|+.+.+- +..+...+..+.+..+ ++.+.+..+|+|+..+.. . ..+.+.+.+...+ +.++.+|... +
T Consensus 85 D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~ 162 (232)
T PF04670_consen 85 DAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-E 162 (232)
T ss_dssp ETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-T
T ss_pred EcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-c
Confidence 9984443 3334455556666555 479999999999964321 1 1122334444555 6889998887 5
Q ss_pred CHHHHHHHHHHHHH
Q psy3029 255 GIEDVFLNVSKGLI 268 (617)
Q Consensus 255 gI~eLf~~I~~~l~ 268 (617)
.+-+.|..|+..+.
T Consensus 163 Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 163 SLYEAWSKIVQKLI 176 (232)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHc
Confidence 77777777777654
No 271
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.12 E-value=8e-10 Score=119.25 Aligned_cols=75 Identities=19% Similarity=0.315 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHHcCCCCC-cc-----CCCcceeEEEEEE---------------EEC-CeEEEEEEEecCCc----ccc
Q psy3029 115 LGVGKTSMVVRYIGKMFSH-HI-----SPTIGASFFTAKI---------------NVG-ENKVKLQVWDTAGQ----ERF 168 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~-~~-----~~t~g~~~~~~~i---------------~~~-~~~~~l~i~Dt~G~----e~~ 168 (617)
||||||||+|+|++..+.. .| .|++|..+....+ ..+ .....+++||++|. .+.
T Consensus 10 pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl~~ga~~g 89 (396)
T PRK09602 10 PNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGLVPGAHEG 89 (396)
T ss_pred CCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCcCCCccch
Confidence 9999999999999876532 22 2444432211100 011 13467999999995 333
Q ss_pred cccchhh---hccCCEEEEEEeCC
Q psy3029 169 RSMAPMY---YRNANAALLVFDIT 189 (617)
Q Consensus 169 ~~~~~~~---~~~ad~iIlV~Dis 189 (617)
..+...+ ++++|++++|+|+.
T Consensus 90 ~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 90 RGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred hhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4455556 78999999999997
No 272
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.12 E-value=6.7e-10 Score=117.37 Aligned_cols=149 Identities=21% Similarity=0.201 Sum_probs=106.3
Q ss_pred CCCCHHHHHHHHHcCCC-------CCc------cCCCcceeEEEEEEEE-----CCeEEEEEEEecCCcccccccchhhh
Q psy3029 115 LGVGKTSMVVRYIGKMF-------SHH------ISPTIGASFFTAKINV-----GENKVKLQVWDTAGQERFRSMAPMYY 176 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~-------~~~------~~~t~g~~~~~~~i~~-----~~~~~~l~i~Dt~G~e~~~~~~~~~~ 176 (617)
--=|||||..||+...- .+. .....|+++....+.+ +++.+.|+++||||+-+|.......+
T Consensus 18 IDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSL 97 (603)
T COG0481 18 IDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSL 97 (603)
T ss_pred ecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhH
Confidence 45699999999974211 111 1223455554444333 45789999999999999988888889
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC---eEEEEcCCCC
Q psy3029 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG---TYYETSALQD 253 (617)
Q Consensus 177 ~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~---~~~evSAktg 253 (617)
.-|.++|||+|++..---+.+...+..+. .+..+|-|+||+||..... ..-..++-.-+|+ ..+.+|||+|
T Consensus 98 AACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adp--ervk~eIe~~iGid~~dav~~SAKtG 171 (603)
T COG0481 98 AACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADP--ERVKQEIEDIIGIDASDAVLVSAKTG 171 (603)
T ss_pred hhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCH--HHHHHHHHHHhCCCcchheeEecccC
Confidence 99999999999988655555555444443 3468899999999975432 1222344445566 5789999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy3029 254 QGIEDVFLNVSKGLIC 269 (617)
Q Consensus 254 ~gI~eLf~~I~~~l~~ 269 (617)
.||+++++.|++.+..
T Consensus 172 ~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 172 IGIEDVLEAIVEKIPP 187 (603)
T ss_pred CCHHHHHHHHHhhCCC
Confidence 9999999999988754
No 273
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.11 E-value=1.4e-10 Score=111.04 Aligned_cols=107 Identities=21% Similarity=0.313 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEE-CCeEEEEEEEecCCcccccccc-hh--hhccCCEEEEEEeCCC
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINV-GENKVKLQVWDTAGQERFRSMA-PM--YYRNANAALLVFDITQ 190 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~-~~~~~~l~i~Dt~G~e~~~~~~-~~--~~~~ad~iIlV~Dis~ 190 (617)
+|+|||+|+.+|..+.+...+.+. .... .+.+ ......+.++|+||+++.+... .. +..++.+||||+|.+.
T Consensus 12 s~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~ 87 (181)
T PF09439_consen 12 SGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSST 87 (181)
T ss_dssp TTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTT
T ss_pred CCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCcc
Confidence 999999999999998654443332 2111 1112 1233468999999999877533 33 5789999999999874
Q ss_pred -hhhHHHHHHHHHHHHh---cCCCCCeEEEEEECCCCCC
Q psy3029 191 -YHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLES 225 (617)
Q Consensus 191 -~~S~~~l~~~l~~i~~---~~~~~iPvIlVgNK~DL~~ 225 (617)
...+.++.++|-.+.. .....+|++|++||.|+..
T Consensus 88 ~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 88 DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 3456666666665533 2246689999999999864
No 274
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.10 E-value=4.6e-10 Score=104.00 Aligned_cols=133 Identities=23% Similarity=0.198 Sum_probs=90.3
Q ss_pred chhhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEc
Q psy3029 172 APMYYRNANAALLVFDITQYHSFA--AIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETS 249 (617)
Q Consensus 172 ~~~~~~~ad~iIlV~Dis~~~S~~--~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evS 249 (617)
....++++|++|+|+|++++.+.. .+.+|+... . .++|+++|+||+|+..+.. ..+..++++..+..++++|
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iS 78 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFS 78 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEE
Confidence 345678999999999999877543 455555543 1 2469999999999965332 2344456666778899999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcccccccccccccCCccCCCCCCcccccCCCCCCCCCCchhhhheeeeccCCCCCCC
Q psy3029 250 ALQDQGIEDVFLNVSKGLICLSQESLHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLTEAETAKFVVGLSINSRVP 329 (617)
Q Consensus 250 Aktg~gI~eLf~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ss~~~~~~~~~~~~v~ivG~~~~s~~~ 329 (617)
|+++.+ +++++|.+
T Consensus 79 a~~~~~------------------------------------------------------------~~~~~G~~------ 92 (141)
T cd01857 79 ALKENA------------------------------------------------------------TIGLVGYP------ 92 (141)
T ss_pred ecCCCc------------------------------------------------------------EEEEECCC------
Confidence 997654 36777777
Q ss_pred cceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecCCC
Q psy3029 330 NCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTGLK 388 (617)
Q Consensus 330 ~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~ 388 (617)
+||||+++++++...+.... .+.|..-....+.+++ .+.|--++|+.
T Consensus 93 ----------~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~i~DtpG~~ 139 (141)
T cd01857 93 ----------NVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP-TITLCDCPGLV 139 (141)
T ss_pred ----------CCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC-CEEEEECCCcC
Confidence 99999999999987664322 2233333445666765 34555566654
No 275
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.09 E-value=6.5e-10 Score=104.66 Aligned_cols=152 Identities=21% Similarity=0.168 Sum_probs=89.8
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHH-HHHHhcCCeEEEEcCCCCCCHHH
Q psy3029 180 NAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF-HYSKSIGGTYYETSALQDQGIED 258 (617)
Q Consensus 180 d~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~-~~~~~~g~~~~evSAktg~gI~e 258 (617)
|++|+|+|++++.+... .|+.. ......++|+++|+||+|+....+ ..+.. .+....+..++.+||+++.|+++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~--~~~~~~~~~~~~~~~ii~vSa~~~~gi~~ 75 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEV--LRKWLAYLRHSYPTIPFKISATNGQGIEK 75 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHH--HHHHHHHHHhhCCceEEEEeccCCcChhh
Confidence 78999999988765432 23331 111123479999999999964322 11211 23333456789999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccccccCCccCCCCCCcccccCCCCCCCCCCchhhhheeeeccCCCCCCCcceeeeeee
Q psy3029 259 VFLNVSKGLICLSQESLHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLTEAETAKFVVGLSINSRVPNCFEANWFW 338 (617)
Q Consensus 259 Lf~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ss~~~~~~~~~~~~v~ivG~~~~s~~~~~~~~~~g~ 338 (617)
+++.|.+.+......... . .......+++++|.|
T Consensus 76 L~~~i~~~~~~~~~~~~~---------~----------------------~~~~~~~~~~~~G~~--------------- 109 (155)
T cd01849 76 KESAFTKQTNSNLKSYAK---------D----------------------GKLKKSITVGVIGYP--------------- 109 (155)
T ss_pred HHHHHHHHhHHHHHHHHh---------c----------------------cccccCcEEEEEccC---------------
Confidence 999987765322111000 0 000123567888888
Q ss_pred cccccccceeccccCc-ccCccCCccceeeEEEEEEECCEEEEEEeecC
Q psy3029 339 LGVGKTSMVVRYIGKM-FSHHISPTIGASFFTAKINVGENKVKLQLRTG 386 (617)
Q Consensus 339 ~~vGKssi~~~~~~~~-f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~ 386 (617)
++|||++++.++... +.....|.++.+.. .+.++ ..+.|--++|
T Consensus 110 -~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~-~~~~liDtPG 154 (155)
T cd01849 110 -NVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD-NKIKLLDTPG 154 (155)
T ss_pred -CCCHHHHHHHHHccccccccCCCCcccceE--EEEec-CCEEEEECCC
Confidence 999999999988654 33333343334332 22333 3455544555
No 276
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.09 E-value=4e-10 Score=112.44 Aligned_cols=161 Identities=14% Similarity=0.142 Sum_probs=103.5
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...++|+|+|+ .|||||||||+|..+.......-..|.+....... ....-.+.+||
T Consensus 37 ~~pvnvLi~G~----------------------TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~-~~~~~~l~lwD 93 (296)
T COG3596 37 KEPVNVLLMGA----------------------TGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRL-SYDGENLVLWD 93 (296)
T ss_pred cCceeEEEecC----------------------CCCcHHHHHHHHHhccCceeeecccCCCchhhHHh-hccccceEEec
Confidence 34578999999 99999999999997553322211222222111111 11224689999
Q ss_pred cCCccc-------ccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcc-------
Q psy3029 162 TAGQER-------FRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSR------- 227 (617)
Q Consensus 162 t~G~e~-------~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~------- 227 (617)
+||.++ |......++...|+++++.++.++.--.+. +++..+....-. .++++|+|.+|....-
T Consensus 94 tPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~~~-~~~i~~VtQ~D~a~p~~~W~~~~ 171 (296)
T COG3596 94 TPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDE-DFLRDVIILGLD-KRVLFVVTQADRAEPGREWDSAG 171 (296)
T ss_pred CCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCH-HHHHHHHHhccC-ceeEEEEehhhhhcccccccccc
Confidence 999864 666677888899999999999887522222 334444333322 5899999999975331
Q ss_pred -ccC-------HHHHH---HHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 228 -EVN-------REEAF---HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 228 -~v~-------~~e~~---~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
... .+++. +++.+ --+++.+|...+.|++++...++..+.
T Consensus 172 ~~p~~a~~qfi~~k~~~~~~~~q~-V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 172 HQPSPAIKQFIEEKAEALGRLFQE-VKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhh-cCCeEEeccccCccHHHHHHHHHHhCc
Confidence 111 11111 12211 127888999999999999999988765
No 277
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.09 E-value=6.2e-10 Score=115.00 Aligned_cols=161 Identities=17% Similarity=0.196 Sum_probs=100.6
Q ss_pred ccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEc
Q psy3029 170 SMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETS 249 (617)
Q Consensus 170 ~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evS 249 (617)
..+...++.+|++|+|+|++.+.+... .++..+. .+.|+++|+||+|+.+... .+...++....+.+++.+|
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iS 84 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAV--TKQWLKYFEEKGIKALAIN 84 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHH--HHHHHHHHHHcCCeEEEEE
Confidence 445677889999999999987754322 1122211 1358999999999954321 1222333444567889999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcccccccccccccCCccCCCCCCcccccCCCCCCCCCCchhhhheeeeccCCCCCCC
Q psy3029 250 ALQDQGIEDVFLNVSKGLICLSQESLHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLTEAETAKFVVGLSINSRVP 329 (617)
Q Consensus 250 Aktg~gI~eLf~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ss~~~~~~~~~~~~v~ivG~~~~s~~~ 329 (617)
|+++.|+++|.+.|.+.+........ .........+++++|.|
T Consensus 85 a~~~~gi~~L~~~i~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~vG~~------ 127 (276)
T TIGR03596 85 AKKGKGVKKIIKAAKKLLKEKNEKLK-------------------------------AKGLKNRPIRAMIVGIP------ 127 (276)
T ss_pred CCCcccHHHHHHHHHHHHHHhhhhhh-------------------------------hccCCCCCeEEEEECCC------
Confidence 99999999999988777643221100 00011124667888877
Q ss_pred cceeeeeeecccccccceeccccCcc-cCccCCccceeeEEEEEEECCEEEEEEeecCCC
Q psy3029 330 NCFEANWFWLGVGKTSMVVRYIGKMF-SHHISPTIGASFFTAKINVGENKVKLQLRTGLK 388 (617)
Q Consensus 330 ~~~~~~~g~~~vGKssi~~~~~~~~f-~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~ 388 (617)
+||||++++++.+... .....|.+ ......+.++. .+.|--+||+.
T Consensus 128 ----------nvGKSslin~l~~~~~~~~~~~~g~--T~~~~~~~~~~-~~~l~DtPG~~ 174 (276)
T TIGR03596 128 ----------NVGKSTLINRLAGKKVAKVGNRPGV--TKGQQWIKLSD-GLELLDTPGIL 174 (276)
T ss_pred ----------CCCHHHHHHHHhCCCccccCCCCCe--ecceEEEEeCC-CEEEEECCCcc
Confidence 9999999999987653 22223333 23334555543 45666677774
No 278
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.09 E-value=5.1e-10 Score=122.70 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=74.2
Q ss_pred EEEEEEecCCcccccccchhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccC--H
Q psy3029 155 VKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYH-SFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVN--R 231 (617)
Q Consensus 155 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~-S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~--~ 231 (617)
..+.|+|+||+++|.......+..+|++++|+|+..+. ..+. .+.+..+... .- .++|||+||+|+.+..... .
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~i~~~l-gi-~~iIVvlNKiDlv~~~~~~~~~ 193 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLAAVEIM-KL-KHIIILQNKIDLVKEAQAQDQY 193 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHHHHHHc-CC-CcEEEEEecccccCHHHHHHHH
Confidence 36899999999988766666777999999999998741 2111 2223322222 22 3689999999997432211 1
Q ss_pred HHHHHHHHh---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 232 EEAFHYSKS---IGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 232 ~e~~~~~~~---~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
+++..+... ..++++++||++|.|+++|++.|...+
T Consensus 194 ~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 194 EEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 223333322 256899999999999999999887643
No 279
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.07 E-value=1.1e-09 Score=120.43 Aligned_cols=141 Identities=18% Similarity=0.143 Sum_probs=89.3
Q ss_pred CCCCHHHHHHHHHcC--CCCC---------------------------ccCCCcceeEEEEEEEECCeEEEEEEEecCCc
Q psy3029 115 LGVGKTSMVVRYIGK--MFSH---------------------------HISPTIGASFFTAKINVGENKVKLQVWDTAGQ 165 (617)
Q Consensus 115 ~nVGKSSLinrl~~~--~~~~---------------------------~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~ 165 (617)
.++|||||+.+|+.. .... ......|.+.......+......+.|+||||+
T Consensus 16 vd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i~lIDtPGh 95 (446)
T PTZ00141 16 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYFTIIDAPGH 95 (446)
T ss_pred CCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEEEEEECCCh
Confidence 999999999999741 0000 00012344444444555666788999999999
Q ss_pred ccccccchhhhccCCEEEEEEeCCChh---hH---HHHHHHHHHHHhcCCCCCe-EEEEEECCCCCC--ccc----cCHH
Q psy3029 166 ERFRSMAPMYYRNANAALLVFDITQYH---SF---AAIKTWVKELKRNVDEPLV-LCVVGNKTDLES--SRE----VNRE 232 (617)
Q Consensus 166 e~~~~~~~~~~~~ad~iIlV~Dis~~~---S~---~~l~~~l~~i~~~~~~~iP-vIlVgNK~DL~~--~~~----v~~~ 232 (617)
++|.......+..+|++|+|+|+.... .| ....+.+..+.. ..+| +|+++||+|... ..+ ...+
T Consensus 96 ~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~ 172 (446)
T PTZ00141 96 RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKTVNYSQERYDEIKK 172 (446)
T ss_pred HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccccchhhHHHHHHHHH
Confidence 998877777788999999999998642 11 112222223332 2244 679999999532 111 1123
Q ss_pred HHHHHHHhcC-----CeEEEEcCCCCCCHHH
Q psy3029 233 EAFHYSKSIG-----GTYYETSALQDQGIED 258 (617)
Q Consensus 233 e~~~~~~~~g-----~~~~evSAktg~gI~e 258 (617)
++..++...+ ++++.+||.+|+|+.+
T Consensus 173 ~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 173 EVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred HHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 3444444443 5799999999999864
No 280
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.07 E-value=4.2e-10 Score=120.48 Aligned_cols=94 Identities=26% Similarity=0.326 Sum_probs=69.6
Q ss_pred cccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHH----HHHHh
Q psy3029 165 QERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF----HYSKS 240 (617)
Q Consensus 165 ~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~----~~~~~ 240 (617)
.++|..+...++..++++++|+|+.+.. ..|...+.+... ..|+++|+||+||... ....++.. ++++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 4577788888889999999999997754 235555555443 3699999999999653 23333333 34666
Q ss_pred cCC---eEEEEcCCCCCCHHHHHHHHHH
Q psy3029 241 IGG---TYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 241 ~g~---~~~evSAktg~gI~eLf~~I~~ 265 (617)
.++ .++++||++|.|++++++.|.+
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHH
Confidence 776 4899999999999999998854
No 281
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.05 E-value=1.6e-09 Score=125.70 Aligned_cols=133 Identities=17% Similarity=0.114 Sum_probs=85.7
Q ss_pred CCCCHHHHHHHHHcCC--C--CCccCC------------CcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhcc
Q psy3029 115 LGVGKTSMVVRYIGKM--F--SHHISP------------TIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~--~--~~~~~~------------t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ 178 (617)
+|+|||||+++|+... . ...... ..|.++......+......+.+|||||+.++......+++.
T Consensus 19 ~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~ 98 (689)
T TIGR00484 19 IDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRV 98 (689)
T ss_pred CCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhHHHHHHHHH
Confidence 9999999999997321 0 000110 23444444444454456789999999999888788889999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC----eEEEEcCCCC
Q psy3029 179 ANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG----TYYETSALQD 253 (617)
Q Consensus 179 ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~----~~~evSAktg 253 (617)
+|++|+|+|+.+....... .++..+.. .++|++||+||+|+..... .+....+...++. ..+.+|+..+
T Consensus 99 ~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~~~--~~~~~~i~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 99 LDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTGANF--LRVVNQIKQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred hCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCCCCH--HHHHHHHHHHhCCCceeEEeccccCCC
Confidence 9999999999886554433 23333333 3479999999999875321 1222233333333 3566777665
No 282
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=2.4e-09 Score=115.80 Aligned_cols=143 Identities=17% Similarity=0.162 Sum_probs=97.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECC-eEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCCh--
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE-NKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQY-- 191 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~-~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~-- 191 (617)
---|||||+..+...+..+...-.+.-.+....+..+. ..-.+.|+||||++-|..|+..=.+=+|+++||+|+.+.
T Consensus 14 VDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~ 93 (509)
T COG0532 14 VDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVM 93 (509)
T ss_pred ccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcc
Confidence 89999999999987665433222222222223333321 234789999999999999888878889999999999884
Q ss_pred -hhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC---------CeEEEEcCCCCCCHHHHHH
Q psy3029 192 -HSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG---------GTYYETSALQDQGIEDVFL 261 (617)
Q Consensus 192 -~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g---------~~~~evSAktg~gI~eLf~ 261 (617)
++.+.+. .....++|++|+.||+|..+.. ......-..++| ..++++||++|+|+++|++
T Consensus 94 pQTiEAI~-------hak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~ 163 (509)
T COG0532 94 PQTIEAIN-------HAKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLE 163 (509)
T ss_pred hhHHHHHH-------HHHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHH
Confidence 3333322 2222458999999999987432 222222222333 3789999999999999999
Q ss_pred HHHHHH
Q psy3029 262 NVSKGL 267 (617)
Q Consensus 262 ~I~~~l 267 (617)
.|+-..
T Consensus 164 ~ill~a 169 (509)
T COG0532 164 LILLLA 169 (509)
T ss_pred HHHHHH
Confidence 876544
No 283
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.05 E-value=1.5e-09 Score=112.85 Aligned_cols=161 Identities=16% Similarity=0.206 Sum_probs=103.0
Q ss_pred ccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEc
Q psy3029 170 SMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETS 249 (617)
Q Consensus 170 ~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evS 249 (617)
..+...++.+|++|+|+|++.+.+... .++..+.. +.|+++|.||+|+.+... .+...++....+.+++.+|
T Consensus 16 ~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~----~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vS 87 (287)
T PRK09563 16 REIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG----NKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAIN 87 (287)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC----CCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEE
Confidence 345667889999999999988754322 22222221 368999999999954321 1233344445567889999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcccccccccccccCCccCCCCCCcccccCCCCCCCCCCchhhhheeeeccCCCCCCC
Q psy3029 250 ALQDQGIEDVFLNVSKGLICLSQESLHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLTEAETAKFVVGLSINSRVP 329 (617)
Q Consensus 250 Aktg~gI~eLf~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ss~~~~~~~~~~~~v~ivG~~~~s~~~ 329 (617)
|+++.|++++++.|...+........ .........+++++|.|
T Consensus 88 a~~~~gi~~L~~~l~~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~G~p------ 130 (287)
T PRK09563 88 AKKGQGVKKILKAAKKLLKEKNERRK-------------------------------AKGMRPRAIRAMIIGIP------ 130 (287)
T ss_pred CCCcccHHHHHHHHHHHHHHHHhhhh-------------------------------hcccCcCceEEEEECCC------
Confidence 99999999999998877654321100 00011124668888888
Q ss_pred cceeeeeeecccccccceeccccCcc-cCccCCccceeeEEEEEEECCEEEEEEeecCCC
Q psy3029 330 NCFEANWFWLGVGKTSMVVRYIGKMF-SHHISPTIGASFFTAKINVGENKVKLQLRTGLK 388 (617)
Q Consensus 330 ~~~~~~~g~~~vGKssi~~~~~~~~f-~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~ 388 (617)
+||||++++.+.+... .....|.++... ..+.+++ .+.|--++|+.
T Consensus 131 ----------nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~-~~~l~DtPGi~ 177 (287)
T PRK09563 131 ----------NVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK-GLELLDTPGIL 177 (287)
T ss_pred ----------CCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC-cEEEEECCCcC
Confidence 9999999999997654 333344443333 3455544 46677788874
No 284
>KOG0090|consensus
Probab=99.02 E-value=2.2e-09 Score=103.07 Aligned_cols=146 Identities=18% Similarity=0.267 Sum_probs=94.7
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhc---cCCEEEEEEeCCCh
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYR---NANAALLVFDITQY 191 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~---~ad~iIlV~Dis~~ 191 (617)
.++|||+|+-+|..+.+...+.+. ... .-.+.... -...++|.||+.+.+.....++. .+-++|||+|..-.
T Consensus 47 ~dSGKT~LF~qL~~gs~~~TvtSi-epn--~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f 121 (238)
T KOG0090|consen 47 SDSGKTSLFTQLITGSHRGTVTSI-EPN--EATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATF 121 (238)
T ss_pred CCCCceeeeeehhcCCccCeeeee-ccc--eeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeEEEEEecccc
Confidence 999999999999988654433221 111 11112222 23789999999988777777777 79999999996543
Q ss_pred -hhHHHHHHHHHHHHhcC---CCCCeEEEEEECCCCCCccc--cC----HHHHHH-------------------------
Q psy3029 192 -HSFAAIKTWVKELKRNV---DEPLVLCVVGNKTDLESSRE--VN----REEAFH------------------------- 236 (617)
Q Consensus 192 -~S~~~l~~~l~~i~~~~---~~~iPvIlVgNK~DL~~~~~--v~----~~e~~~------------------------- 236 (617)
....++.+++-.+.-.. ...+|++|++||.|+...+. +. +.|+..
T Consensus 122 ~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~ 201 (238)
T KOG0090|consen 122 LKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKE 201 (238)
T ss_pred chhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccc
Confidence 34566666666654333 46689999999999953211 00 001100
Q ss_pred -----HH--HhcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 237 -----YS--KSIGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 237 -----~~--~~~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
|. ....+.|.++|++++ +++++-+||.+.
T Consensus 202 g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 202 GEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 00 001236889999988 899999998764
No 285
>KOG1490|consensus
Probab=99.02 E-value=6.4e-10 Score=118.16 Aligned_cols=155 Identities=19% Similarity=0.138 Sum_probs=102.8
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccc----cch----hhhc-cCCEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRS----MAP----MYYR-NANAALLV 185 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~----~~~----~~~~-~ad~iIlV 185 (617)
||||||||+|.+........ |-...+..-...+++.+...++++||||..+... .+. .++. =-.+||++
T Consensus 177 PNVGKSSf~~~vtradvevq--pYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYf 254 (620)
T KOG1490|consen 177 PNVGKSSFNNKVTRADDEVQ--PYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYF 254 (620)
T ss_pred CCCCcHhhcccccccccccC--CcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheee
Confidence 99999999999987654322 2222221222234456778899999999732210 000 1111 13478999
Q ss_pred EeCCChh--hHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHH---HHHHHHhcCCeEEEEcCCCCCCHHHHH
Q psy3029 186 FDITQYH--SFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREE---AFHYSKSIGGTYYETSALQDQGIEDVF 260 (617)
Q Consensus 186 ~Dis~~~--S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e---~~~~~~~~g~~~~evSAktg~gI~eLf 260 (617)
.|++... |...--+.+..|.-.... .|+|+|+||+|+.....++.+. ...+....+++++++|+.+.+||.++.
T Consensus 255 mDLSe~CGySva~QvkLfhsIKpLFaN-K~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vr 333 (620)
T KOG1490|consen 255 MDLSEMCGYSVAAQVKLYHSIKPLFAN-KVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVR 333 (620)
T ss_pred eechhhhCCCHHHHHHHHHHhHHHhcC-CceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHH
Confidence 9999866 444444566777666544 5999999999997666555443 223344445899999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy3029 261 LNVSKGLICLSQ 272 (617)
Q Consensus 261 ~~I~~~l~~~~~ 272 (617)
...++.++...-
T Consensus 334 t~ACe~LLa~RV 345 (620)
T KOG1490|consen 334 TTACEALLAARV 345 (620)
T ss_pred HHHHHHHHHHHH
Confidence 988888776543
No 286
>PRK12739 elongation factor G; Reviewed
Probab=99.02 E-value=3.2e-09 Score=123.08 Aligned_cols=107 Identities=19% Similarity=0.125 Sum_probs=71.8
Q ss_pred CCCCHHHHHHHHHcCC--C--CCccC------------CCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhcc
Q psy3029 115 LGVGKTSMVVRYIGKM--F--SHHIS------------PTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~--~--~~~~~------------~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ 178 (617)
+++|||||+++|+... . ...+. ...|.++......+......+.++||||+.+|...+..+++.
T Consensus 17 ~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~ 96 (691)
T PRK12739 17 IDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRV 96 (691)
T ss_pred CCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHH
Confidence 9999999999997421 0 00000 123344443333443456789999999998887778888999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCC
Q psy3029 179 ANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLES 225 (617)
Q Consensus 179 ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~ 225 (617)
+|++|+|+|+.+...-... ..+..+.. ..+|+|+++||+|+..
T Consensus 97 ~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 97 LDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred hCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 9999999999876433322 22233332 3468999999999864
No 287
>PRK09866 hypothetical protein; Provisional
Probab=99.01 E-value=6.4e-09 Score=115.12 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=72.4
Q ss_pred EEEEEEecCCcccc-----cccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcccc
Q psy3029 155 VKLQVWDTAGQERF-----RSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREV 229 (617)
Q Consensus 155 ~~l~i~Dt~G~e~~-----~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v 229 (617)
..+.|+||||.... .......+..+|+||||+|+....+..+. ..+..+.+. ....|+++|+||+|+.+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~-~K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAV-GQSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhc-CCCCCEEEEEEcccCCCcccc
Confidence 35778999997532 22344578899999999999875444331 223333332 222599999999998643322
Q ss_pred CHHHHHHHHH----hcC---CeEEEEcCCCCCCHHHHHHHHHH
Q psy3029 230 NREEAFHYSK----SIG---GTYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 230 ~~~e~~~~~~----~~g---~~~~evSAktg~gI~eLf~~I~~ 265 (617)
..+....+.. ..+ ..+|+|||++|.|++++++.|..
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 2344444432 112 26999999999999999999876
No 288
>PRK12740 elongation factor G; Reviewed
Probab=99.01 E-value=3e-09 Score=123.21 Aligned_cols=109 Identities=17% Similarity=0.130 Sum_probs=73.8
Q ss_pred CCCCCCCHHHHHHHHHcCCCC----CccC------------CCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhh
Q psy3029 112 WFWLGVGKTSMVVRYIGKMFS----HHIS------------PTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175 (617)
Q Consensus 112 ~G~~nVGKSSLinrl~~~~~~----~~~~------------~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~ 175 (617)
+|.+++|||||+++|+...-. .... ...|.++......+....+.+.+|||||+.++...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 466999999999999532100 0000 012333333333344456789999999998887778888
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCC
Q psy3029 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLE 224 (617)
Q Consensus 176 ~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~ 224 (617)
+..+|++|+|+|++.........-| ..+.. .++|+++|+||+|+.
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 9999999999999887655443323 33332 347999999999985
No 289
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.00 E-value=1e-09 Score=96.52 Aligned_cols=132 Identities=20% Similarity=0.189 Sum_probs=90.0
Q ss_pred CCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcc----cccccchhhhccCCEEEEEEe
Q psy3029 112 WFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQE----RFRSMAPMYYRNANAALLVFD 187 (617)
Q Consensus 112 ~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e----~~~~~~~~~~~~ad~iIlV~D 187 (617)
+|..|+|||||+++|.+... .+..|..+++.. . -.+||+|.- ++...+-....++|++++|-.
T Consensus 7 vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~d-------~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 7 VGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFND-------K----GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred ecccccCchhHHHHhhcchh--hhcccceeeccC-------c----cccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 33399999999999988652 444444433311 1 146999852 222222334568999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHH
Q psy3029 188 ITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 188 is~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~ 265 (617)
+++++|.-. ..+.... ..|+|=|++|+||.++.+ .+....|..+.|. ++|++|+.++.||++|++.|..
T Consensus 74 and~~s~f~-----p~f~~~~--~k~vIgvVTK~DLaed~d--I~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 74 ANDPESRFP-----PGFLDIG--VKKVIGVVTKADLAEDAD--ISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred ccCccccCC-----ccccccc--ccceEEEEecccccchHh--HHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 999875211 1222222 246899999999986444 3455678888887 8999999999999999998754
No 290
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.95 E-value=6.8e-09 Score=122.68 Aligned_cols=140 Identities=24% Similarity=0.246 Sum_probs=89.9
Q ss_pred CCHHHHHHHHHcCCCCCccC----CCcceeEEEEEEEECC-e----------E-----EEEEEEecCCcccccccchhhh
Q psy3029 117 VGKTSMVVRYIGKMFSHHIS----PTIGASFFTAKINVGE-N----------K-----VKLQVWDTAGQERFRSMAPMYY 176 (617)
Q Consensus 117 VGKSSLinrl~~~~~~~~~~----~t~g~~~~~~~i~~~~-~----------~-----~~l~i~Dt~G~e~~~~~~~~~~ 176 (617)
|+||||+.+|.+....+... ..+|..+ +..+. . . -.+.||||||++.|..+....+
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~----v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~ 547 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATE----IPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGG 547 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEE----EEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhc
Confidence 57999999998766533221 2233221 21111 0 0 1289999999999988887788
Q ss_pred ccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccC----------------HHHHH--
Q psy3029 177 RNANAALLVFDITQ---YHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVN----------------REEAF-- 235 (617)
Q Consensus 177 ~~ad~iIlV~Dis~---~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~----------------~~e~~-- 235 (617)
..+|++++|+|+++ +.++..+. .+.. .++|+++|+||+|+....... .++..
T Consensus 548 ~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~ 620 (1049)
T PRK14845 548 SLADLAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIK 620 (1049)
T ss_pred ccCCEEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHH
Confidence 89999999999987 34444433 2222 247999999999986321110 01110
Q ss_pred --HH---HHhc---------------CCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 236 --HY---SKSI---------------GGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 236 --~~---~~~~---------------g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
.+ ..+. .+++++|||++|+||++|+..|....
T Consensus 621 l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 621 LYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 00 0111 24899999999999999998876543
No 291
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.95 E-value=2.3e-09 Score=109.50 Aligned_cols=97 Identities=18% Similarity=0.165 Sum_probs=77.9
Q ss_pred ccccccchhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCe
Q psy3029 166 ERFRSMAPMYYRNANAALLVFDITQYH-SFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGT 244 (617)
Q Consensus 166 e~~~~~~~~~~~~ad~iIlV~Dis~~~-S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~ 244 (617)
++...+.+.-+.+.|-+++|+.+.+|+ +...++++|..+.. .++..+||+||+||.++.+...++...++..+|++
T Consensus 67 ~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~ 143 (301)
T COG1162 67 PRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYP 143 (301)
T ss_pred cccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCee
Confidence 466677788888899999999998887 77888888887766 33566788999999876543334566788889999
Q ss_pred EEEEcCCCCCCHHHHHHHHHH
Q psy3029 245 YYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 245 ~~evSAktg~gI~eLf~~I~~ 265 (617)
++.+|++++.++++|.+.+..
T Consensus 144 v~~~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 144 VLFVSAKNGDGLEELAELLAG 164 (301)
T ss_pred EEEecCcCcccHHHHHHHhcC
Confidence 999999999999999887643
No 292
>KOG0084|consensus
Probab=98.94 E-value=6.2e-10 Score=105.55 Aligned_cols=57 Identities=25% Similarity=0.269 Sum_probs=54.0
Q ss_pred CCcceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 328 VPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 328 ~~~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
...||+++||+++|||||++.||..+.|.+.|.+|||+||..++++++|+.++|||=
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIW 63 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIW 63 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEee
Confidence 346899999999999999999999999999999999999999999999999999984
No 293
>KOG0094|consensus
Probab=98.94 E-value=6.1e-10 Score=105.22 Aligned_cols=58 Identities=26% Similarity=0.358 Sum_probs=54.7
Q ss_pred CCCcceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 327 RVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 327 ~~~~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
..+.||++++|+.+||||||++||+.+.|...|++|||+||..+++.+.|++|.||+=
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlW 76 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 76 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEE
Confidence 4566999999999999999999999999999999999999999999999999999973
No 294
>KOG1145|consensus
Probab=98.92 E-value=2.1e-08 Score=107.85 Aligned_cols=145 Identities=15% Similarity=0.111 Sum_probs=99.2
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
.-=|||||+..|.+....+...-.+.-.+.-..+.+. ..-.+.|.||||+.-|..|+..-..-+|+++||+.+.|.---
T Consensus 162 VDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmp 240 (683)
T KOG1145|consen 162 VDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMP 240 (683)
T ss_pred ccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccH
Confidence 8899999999998776544333322222333444454 336789999999999999988888889999999999884321
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHH-------HhcC--CeEEEEcCCCCCCHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYS-------KSIG--GTYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~-------~~~g--~~~~evSAktg~gI~eLf~~I~~ 265 (617)
+. ++.|......++|+||.+||+|.... ..+....-. +.+| .+++++||++|+|++.|-+.++-
T Consensus 241 QT----~EaIkhAk~A~VpiVvAinKiDkp~a---~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 241 QT----LEAIKHAKSANVPIVVAINKIDKPGA---NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred hH----HHHHHHHHhcCCCEEEEEeccCCCCC---CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHH
Confidence 11 12222222356899999999997542 233333222 2233 37899999999999999988765
Q ss_pred HH
Q psy3029 266 GL 267 (617)
Q Consensus 266 ~l 267 (617)
..
T Consensus 314 ~A 315 (683)
T KOG1145|consen 314 LA 315 (683)
T ss_pred HH
Confidence 43
No 295
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.91 E-value=1.5e-08 Score=104.71 Aligned_cols=124 Identities=15% Similarity=0.188 Sum_probs=70.9
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..++|+++|. +|||||||+|+|++.+.. ......+.+.............++.+|||
T Consensus 37 ~~~rIllvGk----------------------tGVGKSSliNsIlG~~v~-~vs~f~s~t~~~~~~~~~~~G~~l~VIDT 93 (313)
T TIGR00991 37 SSLTILVMGK----------------------GGVGKSSTVNSIIGERIA-TVSAFQSEGLRPMMVSRTRAGFTLNIIDT 93 (313)
T ss_pred cceEEEEECC----------------------CCCCHHHHHHHHhCCCcc-cccCCCCcceeEEEEEEEECCeEEEEEEC
Confidence 4568999999 999999999999987631 11111111111111111123467999999
Q ss_pred CCccccccc-------chhhhc--cCCEEEEEEeCCChhhHHHH-HHHHHHHHhcCCC--CCeEEEEEECCCCCCccccC
Q psy3029 163 AGQERFRSM-------APMYYR--NANAALLVFDITQYHSFAAI-KTWVKELKRNVDE--PLVLCVVGNKTDLESSREVN 230 (617)
Q Consensus 163 ~G~e~~~~~-------~~~~~~--~ad~iIlV~Dis~~~S~~~l-~~~l~~i~~~~~~--~iPvIlVgNK~DL~~~~~v~ 230 (617)
||..+.... .+.++. ..|++|+|..++.. .+... ...+..+....+. -.++|||.|++|.......+
T Consensus 94 PGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~ 172 (313)
T TIGR00991 94 PGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE 172 (313)
T ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence 997643211 222222 58999999665432 12222 2233444433321 13689999999976443333
No 296
>PTZ00258 GTP-binding protein; Provisional
Probab=98.88 E-value=2e-08 Score=107.49 Aligned_cols=75 Identities=19% Similarity=0.151 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCe---------------EEEEEEEecCCccccc----ccc---
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGEN---------------KVKLQVWDTAGQERFR----SMA--- 172 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~---------------~~~l~i~Dt~G~e~~~----~~~--- 172 (617)
||||||||+|+|++........|....+...-.+.+.+. ...+.++||||...-. .+.
T Consensus 30 PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~f 109 (390)
T PTZ00258 30 PNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAF 109 (390)
T ss_pred CCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHH
Confidence 999999999999876532221122111111222222221 2358999999964211 122
Q ss_pred hhhhccCCEEEEEEeCC
Q psy3029 173 PMYYRNANAALLVFDIT 189 (617)
Q Consensus 173 ~~~~~~ad~iIlV~Dis 189 (617)
-..++++|++++|+|..
T Consensus 110 L~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 110 LSHIRAVDGIYHVVRAF 126 (390)
T ss_pred HHHHHHCCEEEEEEeCC
Confidence 22456899999999973
No 297
>PRK00007 elongation factor G; Reviewed
Probab=98.87 E-value=1.5e-08 Score=117.44 Aligned_cols=133 Identities=16% Similarity=0.125 Sum_probs=83.2
Q ss_pred CCCCHHHHHHHHHc--CCCCC--ccC------------CCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhcc
Q psy3029 115 LGVGKTSMVVRYIG--KMFSH--HIS------------PTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178 (617)
Q Consensus 115 ~nVGKSSLinrl~~--~~~~~--~~~------------~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ 178 (617)
+++|||||+++|+. +.... .+. ...|.++......+......+.++||||+.+|.......+..
T Consensus 19 ~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~ 98 (693)
T PRK00007 19 IDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRV 98 (693)
T ss_pred CCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHH
Confidence 99999999999973 11100 010 133444444444444456789999999998776667777889
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC----eEEEEcCCCC
Q psy3029 179 ANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG----TYYETSALQD 253 (617)
Q Consensus 179 ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~----~~~evSAktg 253 (617)
+|++|+|+|+......+...- +..+.. .++|+|+++||+|+.... ..+....+...++. ..+.+||..+
T Consensus 99 ~D~~vlVvda~~g~~~qt~~~-~~~~~~---~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 99 LDGAVAVFDAVGGVEPQSETV-WRQADK---YKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred cCEEEEEEECCCCcchhhHHH-HHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCeeeEEecCccCCc
Confidence 999999999877644333222 223333 346889999999987533 12222333333333 3566777665
No 298
>PRK13796 GTPase YqeH; Provisional
Probab=98.85 E-value=9.5e-09 Score=110.22 Aligned_cols=92 Identities=24% Similarity=0.348 Sum_probs=60.9
Q ss_pred cccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHH----HHHHhcC
Q psy3029 167 RFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF----HYSKSIG 242 (617)
Q Consensus 167 ~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~----~~~~~~g 242 (617)
.|.......-...++|++|+|+.+.. ..|...+.+... +.|+++|+||+||... ....++.. .+++.++
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g 130 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELG 130 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcC
Confidence 34443333333344999999998744 234555554443 3689999999999642 23333333 3355667
Q ss_pred C---eEEEEcCCCCCCHHHHHHHHHH
Q psy3029 243 G---TYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 243 ~---~~~evSAktg~gI~eLf~~I~~ 265 (617)
+ .++.+||+++.|++++++.|.+
T Consensus 131 ~~~~~v~~vSAk~g~gI~eL~~~I~~ 156 (365)
T PRK13796 131 LRPVDVVLISAQKGHGIDELLEAIEK 156 (365)
T ss_pred CCcCcEEEEECCCCCCHHHHHHHHHH
Confidence 6 6899999999999999998865
No 299
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.84 E-value=3e-08 Score=100.71 Aligned_cols=120 Identities=16% Similarity=0.181 Sum_probs=69.9
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..++|+++|. +|||||||+|+|++...... ....+.+.....+........+.+|||
T Consensus 30 ~~~~IllvG~----------------------tGvGKSSliNaLlg~~~~~v-~~~~~~T~~~~~~~~~~~g~~i~vIDT 86 (249)
T cd01853 30 FSLTILVLGK----------------------TGVGKSSTINSIFGERKAAT-SAFQSETLRVREVSGTVDGFKLNIIDT 86 (249)
T ss_pred CCeEEEEECC----------------------CCCcHHHHHHHHhCCCCccc-CCCCCceEEEEEEEEEECCeEEEEEEC
Confidence 3469999999 99999999999998764221 111111222222222223467899999
Q ss_pred CCcccccc----------cchhhhc--cCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCC--CCeEEEEEECCCCCCc
Q psy3029 163 AGQERFRS----------MAPMYYR--NANAALLVFDITQYH-SFAAIKTWVKELKRNVDE--PLVLCVVGNKTDLESS 226 (617)
Q Consensus 163 ~G~e~~~~----------~~~~~~~--~ad~iIlV~Dis~~~-S~~~l~~~l~~i~~~~~~--~iPvIlVgNK~DL~~~ 226 (617)
||...... ....|+. ..+++++|..++... ...+ ...+..|.+..+. -.+++||.||+|...+
T Consensus 87 PGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 87 PGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred CCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 99754410 1223443 578888887665422 2221 1233344333221 1368999999998643
No 300
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.82 E-value=1.3e-08 Score=118.41 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=79.5
Q ss_pred eEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcC---------------CCCCc---cCCCcceeEEEE
Q psy3029 85 IKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGK---------------MFSHH---ISPTIGASFFTA 146 (617)
Q Consensus 85 ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~---------------~~~~~---~~~t~g~~~~~~ 146 (617)
.+|+++|. .++|||||+++|+.. .+... ...|+.......
T Consensus 20 rnI~ivGh----------------------~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~ 77 (720)
T TIGR00490 20 RNIGIVAH----------------------IDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSM 77 (720)
T ss_pred cEEEEEEe----------------------CCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhccccee
Confidence 38999999 999999999999742 11111 122443333333
Q ss_pred EEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCC
Q psy3029 147 KINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLE 224 (617)
Q Consensus 147 ~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~ 224 (617)
.+.+++..+.+.+|||||+.+|......+++.+|++|+|+|+......+...-| ..+.. .++|+++|+||+|..
T Consensus 78 ~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 78 VHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK---ENVKPVLFINKVDRL 151 (720)
T ss_pred EEeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH---cCCCEEEEEEChhcc
Confidence 444667788999999999999888888899999999999998875332222222 22222 336788999999985
No 301
>PRK13768 GTPase; Provisional
Probab=98.81 E-value=1.7e-08 Score=102.87 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=70.8
Q ss_pred EEEEEecCCcccc---cccchhhhc---c--CCEEEEEEeCCChhhHHHH--HHHHHHHHhcCCCCCeEEEEEECCCCCC
Q psy3029 156 KLQVWDTAGQERF---RSMAPMYYR---N--ANAALLVFDITQYHSFAAI--KTWVKELKRNVDEPLVLCVVGNKTDLES 225 (617)
Q Consensus 156 ~l~i~Dt~G~e~~---~~~~~~~~~---~--ad~iIlV~Dis~~~S~~~l--~~~l~~i~~~~~~~iPvIlVgNK~DL~~ 225 (617)
.+.+||+||+.+. ......+++ . .+++++|+|++......++ ..|+....... .++|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhcC
Confidence 5889999998653 233333333 2 8999999999765433332 23333322222 3479999999999875
Q ss_pred ccccCHHHHHH----------------------------HHHhcC--CeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 226 SREVNREEAFH----------------------------YSKSIG--GTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 226 ~~~v~~~e~~~----------------------------~~~~~g--~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
..+. ++... .++..+ .+++++||+++.|+++++++|.+.+
T Consensus 177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 4332 11111 122334 5889999999999999999998766
No 302
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.78 E-value=3.8e-08 Score=98.57 Aligned_cols=130 Identities=18% Similarity=0.224 Sum_probs=74.4
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|+|||||++.+++..-........|. ..+ ......++.++||+|.. ..+ -...+.+|++++|+|.+.....
T Consensus 48 ~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~~~~ 119 (225)
T cd01882 48 PGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLLIDASFGFEM 119 (225)
T ss_pred CCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcCCCH
Confidence 999999999999864222112222221 111 11245678899999864 222 2346789999999998765432
Q ss_pred HHHHHHHHHHHhcCCCCCe-EEEEEECCCCCCccc-cC--HHHHHH-HHHh--cCCeEEEEcCCCCCCH
Q psy3029 195 AAIKTWVKELKRNVDEPLV-LCVVGNKTDLESSRE-VN--REEAFH-YSKS--IGGTYYETSALQDQGI 256 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iP-vIlVgNK~DL~~~~~-v~--~~e~~~-~~~~--~g~~~~evSAktg~gI 256 (617)
.. ..++..+.. ..+| +++|+||+|+..... .. .+++.. +..+ -+.+++.+||++...+
T Consensus 120 ~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 120 ET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred HH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence 22 223333333 2246 455999999864321 10 112222 2221 2358999999987443
No 303
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=4.8e-08 Score=102.70 Aligned_cols=144 Identities=22% Similarity=0.214 Sum_probs=91.7
Q ss_pred CCCCHHHHHHHHHcC--CCCC---------------------------ccCCCcceeEEEEEEEECCeEEEEEEEecCCc
Q psy3029 115 LGVGKTSMVVRYIGK--MFSH---------------------------HISPTIGASFFTAKINVGENKVKLQVWDTAGQ 165 (617)
Q Consensus 115 ~nVGKSSLinrl~~~--~~~~---------------------------~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~ 165 (617)
..+|||||+-||+-+ .+.. ....-.|+++......+.-..+.|.|+|+||+
T Consensus 16 VD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~tIiDaPGH 95 (428)
T COG5256 16 VDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNFTIIDAPGH 95 (428)
T ss_pred CCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCceEEEeeCCch
Confidence 999999999998632 1000 01123456666666666667788999999998
Q ss_pred ccccccchhhhccCCEEEEEEeCCChh---hHHH--HHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHH----HHH
Q psy3029 166 ERFRSMAPMYYRNANAALLVFDITQYH---SFAA--IKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREE----AFH 236 (617)
Q Consensus 166 e~~~~~~~~~~~~ad~iIlV~Dis~~~---S~~~--l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e----~~~ 236 (617)
.+|-.-.-.-...||+.|||+|+++.+ +|.. ..+--..+.+...- -.+||+.||+|+.+-++-..++ ...
T Consensus 96 rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi-~~lIVavNKMD~v~wde~rf~ei~~~v~~ 174 (428)
T COG5256 96 RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGI-KQLIVAVNKMDLVSWDEERFEEIVSEVSK 174 (428)
T ss_pred HHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCC-ceEEEEEEcccccccCHHHHHHHHHHHHH
Confidence 777654444566899999999998864 2211 11111122222222 3688999999997643322222 233
Q ss_pred HHHhcCC-----eEEEEcCCCCCCHHHH
Q psy3029 237 YSKSIGG-----TYYETSALQDQGIEDV 259 (617)
Q Consensus 237 ~~~~~g~-----~~~evSAktg~gI~eL 259 (617)
+.+..|+ +|++|||..|.|+.+.
T Consensus 175 l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 175 LLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHcCCCccCCeEEecccccCCccccc
Confidence 4445554 6999999999998653
No 304
>KOG1707|consensus
Probab=98.76 E-value=9.6e-08 Score=103.79 Aligned_cols=151 Identities=13% Similarity=0.163 Sum_probs=107.5
Q ss_pred CCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCCh
Q psy3029 112 WFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQY 191 (617)
Q Consensus 112 ~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~ 191 (617)
+|..++|||.|++.|+++.+...+..+....+....+.+.+....+.+-|.+-. ....+...- ..||++.++||.+++
T Consensus 431 ~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p 508 (625)
T KOG1707|consen 431 VGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNP 508 (625)
T ss_pred EcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCc
Confidence 466999999999999998887766666666666666666676666777776644 222222222 679999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 192 HSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 192 ~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~~l 267 (617)
.+|..+...+...... ..+|+++|++|+|+.+..+...-.-.+++.++++ +.+.+|.++... .++|..|+...
T Consensus 509 ~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A 582 (625)
T KOG1707|consen 509 RSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKLATMA 582 (625)
T ss_pred hHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhh
Confidence 9998877655443332 5689999999999975543222222689999998 466778775323 78888887654
No 305
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.76 E-value=3.2e-08 Score=97.84 Aligned_cols=55 Identities=18% Similarity=0.120 Sum_probs=40.5
Q ss_pred CeEEEEEECCCCCCccccCHHHHHHHHHhcC--CeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 212 LVLCVVGNKTDLESSREVNREEAFHYSKSIG--GTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 212 iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g--~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
.|.++|+||+|+........++..+..++.+ .+++++||+++.|++++++++.+.
T Consensus 149 ~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 149 EADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999996532222333444444443 689999999999999999999764
No 306
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.75 E-value=6.4e-08 Score=95.08 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=62.0
Q ss_pred EEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHH
Q psy3029 155 VKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEA 234 (617)
Q Consensus 155 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~ 234 (617)
....++++.|..-.... ...+ ++.+|.|+|+.+..+... ++..++.. .=++|+||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~-~~~l--~~~~i~vvD~~~~~~~~~--~~~~qi~~------ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATF-SPEL--ADLTIFVIDVAAGDKIPR--KGGPGITR------SDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCccccc-chhh--hCcEEEEEEcchhhhhhh--hhHhHhhh------ccEEEEEhhhccccccccHHHH
Confidence 34556777774211111 1222 578999999987554221 11122211 1178999999974212223333
Q ss_pred HHHHHh--cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 235 FHYSKS--IGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 235 ~~~~~~--~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
.+..+. .+.+++++||++|+|++++|++|.+++
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344443 356999999999999999999998754
No 307
>KOG0092|consensus
Probab=98.71 E-value=1.5e-08 Score=95.94 Aligned_cols=58 Identities=33% Similarity=0.535 Sum_probs=54.9
Q ss_pred CCCcceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 327 RVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 327 ~~~~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+...||++++|.++||||+|+.||..+.|.+...||||+.|++|++.+++..|+|+|=
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIW 59 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIW 59 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEE
Confidence 3567999999999999999999999999999999999999999999999999999984
No 308
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.71 E-value=1.7e-07 Score=99.30 Aligned_cols=43 Identities=9% Similarity=-0.002 Sum_probs=29.7
Q ss_pred CeEEEEEECCCCC-CccccCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy3029 212 LVLCVVGNKTDLE-SSREVNREEAFHYSKSIGGTYYETSALQDQ 254 (617)
Q Consensus 212 iPvIlVgNK~DL~-~~~~v~~~e~~~~~~~~g~~~~evSAktg~ 254 (617)
.|+++|+|+.|.. .......+++.+++...+.+++.+||+-..
T Consensus 200 KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~E~ 243 (364)
T PRK09601 200 KPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAKIEA 243 (364)
T ss_pred CCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 8999999999852 111222355666777778899999986433
No 309
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.68 E-value=6.6e-08 Score=99.18 Aligned_cols=80 Identities=14% Similarity=0.020 Sum_probs=48.3
Q ss_pred cCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCe---------------EEEEEEEecCCccccc----c
Q psy3029 110 ANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGEN---------------KVKLQVWDTAGQERFR----S 170 (617)
Q Consensus 110 ~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~---------------~~~l~i~Dt~G~e~~~----~ 170 (617)
+|+|.||||||||+|+|++.+......|....+...-.+.+.+. ...+.++|+||..+-. .
T Consensus 2 givG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~g 81 (274)
T cd01900 2 GIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEG 81 (274)
T ss_pred eEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhH
Confidence 56677999999999999987653222222221222222233222 1358999999964311 1
Q ss_pred cchh---hhccCCEEEEEEeCC
Q psy3029 171 MAPM---YYRNANAALLVFDIT 189 (617)
Q Consensus 171 ~~~~---~~~~ad~iIlV~Dis 189 (617)
+... .++++|++++|+|..
T Consensus 82 lg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 82 LGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHhCCEEEEEEeCc
Confidence 2222 356899999999864
No 310
>PRK01889 GTPase RsgA; Reviewed
Probab=98.68 E-value=6.5e-08 Score=103.40 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=61.0
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy3029 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQG 255 (617)
Q Consensus 176 ~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~g 255 (617)
..|+|.+++|+++..+.+...+++++..+... +++++||+||+||.++.....+....+ ..+++++.+||+++.|
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~g 184 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEG 184 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCcc
Confidence 57999999999997555666788888777663 367789999999975321011122222 4578999999999999
Q ss_pred HHHHHHHH
Q psy3029 256 IEDVFLNV 263 (617)
Q Consensus 256 I~eLf~~I 263 (617)
+++|..+|
T Consensus 185 l~~L~~~L 192 (356)
T PRK01889 185 LDVLAAWL 192 (356)
T ss_pred HHHHHHHh
Confidence 99988876
No 311
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.67 E-value=2.2e-07 Score=98.40 Aligned_cols=155 Identities=15% Similarity=0.181 Sum_probs=95.4
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcC----CCC----------CccCCCcc---eeEE
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGK----MFS----------HHISPTIG---ASFF 144 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~----~~~----------~~~~~t~g---~~~~ 144 (617)
..++.|+++|+ .++|||||+|+|.+. ... +...+..| .+..
T Consensus 15 ~G~IyIGvvGp----------------------vrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTe 72 (492)
T TIGR02836 15 QGDIYIGVVGP----------------------VRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTE 72 (492)
T ss_pred CCcEEEEEEcC----------------------CCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCC
Confidence 34578888888 999999999999987 322 13344455 2222
Q ss_pred EEE-------EEE-CCeEEEEEEEecCCccc--------ccc--c-------------------chhhhc-cCCEEEEEE
Q psy3029 145 TAK-------INV-GENKVKLQVWDTAGQER--------FRS--M-------------------APMYYR-NANAALLVF 186 (617)
Q Consensus 145 ~~~-------i~~-~~~~~~l~i~Dt~G~e~--------~~~--~-------------------~~~~~~-~ad~iIlV~ 186 (617)
.+. +.. ++-...+.++||+|... -.. + ++..+. .+|+.|+|.
T Consensus 73 PkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVt 152 (492)
T TIGR02836 73 PKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVT 152 (492)
T ss_pred CccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEE
Confidence 222 222 34457889999998621 111 0 334455 899999998
Q ss_pred -eCC----ChhhHHHH-HHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCC--CCCHHH
Q psy3029 187 -DIT----QYHSFAAI-KTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQ--DQGIED 258 (617)
Q Consensus 187 -Dis----~~~S~~~l-~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAkt--g~gI~e 258 (617)
|.+ .++.+... .+|+.++++ .++|+++|.||+|-..+. ..+....+...++.+++.+|+.. ...|..
T Consensus 153 TDgsi~dI~Re~y~~aEe~~i~eLk~---~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~ 227 (492)
T TIGR02836 153 TDGTITDIPREDYVEAEERVIEELKE---LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILS 227 (492)
T ss_pred cCCCccccccccchHHHHHHHHHHHh---cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHH
Confidence 764 12233333 467777766 447999999999932221 33344466677888988888763 233444
Q ss_pred HHHHH
Q psy3029 259 VFLNV 263 (617)
Q Consensus 259 Lf~~I 263 (617)
+++.+
T Consensus 228 il~~v 232 (492)
T TIGR02836 228 VLEEV 232 (492)
T ss_pred HHHHH
Confidence 44433
No 312
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.65 E-value=2.3e-07 Score=95.32 Aligned_cols=142 Identities=18% Similarity=0.155 Sum_probs=91.1
Q ss_pred CCCCCCHHHHHHHHHcCCCC------------Cc-------------------cCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 113 FWLGVGKTSMVVRYIGKMFS------------HH-------------------ISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 113 G~~nVGKSSLinrl~~~~~~------------~~-------------------~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
|..-=||||||-||+.+.-. .. -....|++++.-.-.+.-.+-+|.|.|
T Consensus 13 GSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~KRkFIiAD 92 (431)
T COG2895 13 GSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEKRKFIIAD 92 (431)
T ss_pred ccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccccceEEEec
Confidence 33788999999999754210 00 001123333333333444566899999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCH----HHHHHH
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNR----EEAFHY 237 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~----~e~~~~ 237 (617)
|||+++|..-+-.-...||++|+++|+...- ++.-. --..|.....- ..++|..||+||.+-.+-.. .+...|
T Consensus 93 TPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTr-RHs~I~sLLGI-rhvvvAVNKmDLvdy~e~~F~~I~~dy~~f 169 (431)
T COG2895 93 TPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTR-RHSFIASLLGI-RHVVVAVNKMDLVDYSEEVFEAIVADYLAF 169 (431)
T ss_pred CCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhH-HHHHHHHHhCC-cEEEEEEeeecccccCHHHHHHHHHHHHHH
Confidence 9999999766666667899999999986532 11111 11222222222 36889999999976544333 334567
Q ss_pred HHhcCC---eEEEEcCCCCCCHH
Q psy3029 238 SKSIGG---TYYETSALQDQGIE 257 (617)
Q Consensus 238 ~~~~g~---~~~evSAktg~gI~ 257 (617)
+.++++ .++++||..|.||-
T Consensus 170 a~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 170 AAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHcCCCcceEEechhccCCccc
Confidence 778876 79999999999984
No 313
>KOG0394|consensus
Probab=98.64 E-value=1e-08 Score=96.13 Aligned_cols=54 Identities=37% Similarity=0.490 Sum_probs=49.7
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
.||.++|+++|||||+++||..+.|+..|..|||+||.+|.+.+|++.++|||=
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiW 63 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIW 63 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEE
Confidence 455666666999999999999999999999999999999999999999999985
No 314
>KOG0095|consensus
Probab=98.64 E-value=3.8e-08 Score=88.88 Aligned_cols=56 Identities=30% Similarity=0.368 Sum_probs=53.0
Q ss_pred cceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeec
Q psy3029 330 NCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRT 385 (617)
Q Consensus 330 ~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~ 385 (617)
-||++++|..+|||+|++.||.++-|+....+|||+||..|+|+++|..|+|||-.
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwd 62 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWD 62 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEee
Confidence 47899999999999999999999999999999999999999999999999999853
No 315
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.63 E-value=2.1e-07 Score=97.98 Aligned_cols=107 Identities=18% Similarity=0.139 Sum_probs=66.8
Q ss_pred EEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcccc--CH
Q psy3029 154 KVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREV--NR 231 (617)
Q Consensus 154 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v--~~ 231 (617)
.+.+.|+||+|.-.-. ......+|.+++|.+......+..+. ..+.+ +.-++|+||+|+...... ..
T Consensus 148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E-----~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK---KGIME-----LADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH---hhhhh-----hhheEEeehhcccchhHHHHHH
Confidence 4678899999975322 12466799999997644443333322 22222 123799999998653221 11
Q ss_pred HHHHHHHHh-------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 232 EEAFHYSKS-------IGGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 232 ~e~~~~~~~-------~g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
.+....... +..+++.+||+++.||++|++.|.+.+....
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~ 263 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALT 263 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 122222221 2258999999999999999999998766443
No 316
>KOG0078|consensus
Probab=98.61 E-value=3.6e-08 Score=94.91 Aligned_cols=57 Identities=28% Similarity=0.285 Sum_probs=52.2
Q ss_pred CCcceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 328 VPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 328 ~~~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
..-+|++++|+++|||||++.||.+++|...|..|||+||..++|+++++.|+|||=
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiW 66 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIW 66 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEE
Confidence 344677778888999999999999999999999999999999999999999999974
No 317
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.59 E-value=3.3e-08 Score=99.70 Aligned_cols=112 Identities=17% Similarity=0.162 Sum_probs=57.0
Q ss_pred EEEEEecCCcccccccchhhh--------ccCCEEEEEEeCCChhh-HHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCc
Q psy3029 156 KLQVWDTAGQERFRSMAPMYY--------RNANAALLVFDITQYHS-FAAIKTWVKELKRNVDEPLVLCVVGNKTDLESS 226 (617)
Q Consensus 156 ~l~i~Dt~G~e~~~~~~~~~~--------~~ad~iIlV~Dis~~~S-~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~ 226 (617)
.+.++|||||.+....+.... ...-++++++|.....+ ...+..++..+........|.|.|.||+|+..+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 688999999976654443332 34558888999754332 122222333322222234799999999999762
Q ss_pred cc------------c-------CH---HHHHHHHHhcCC--eEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 227 RE------------V-------NR---EEAFHYSKSIGG--TYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 227 ~~------------v-------~~---~e~~~~~~~~g~--~~~evSAktg~gI~eLf~~I~~~l 267 (617)
.. . .. +....+...++. .++.+|+++++|+++|+..|-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 10 0 00 011111122233 799999999999999998886643
No 318
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.59 E-value=2.6e-07 Score=91.70 Aligned_cols=150 Identities=17% Similarity=0.106 Sum_probs=79.0
Q ss_pred CCCCHHHHHHHHHcCCCCCccC--CCcceeEEEEEEEECCeEEEEEEEecCCccccc-------ccchh----hhccCCE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHIS--PTIGASFFTAKINVGENKVKLQVWDTAGQERFR-------SMAPM----YYRNANA 181 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~--~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~-------~~~~~----~~~~ad~ 181 (617)
.|+||||++|.+++........ .............+++ ..+.++||||..+.. ..+.. .....++
T Consensus 9 tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha 86 (212)
T PF04548_consen 9 TGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHA 86 (212)
T ss_dssp TTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESE
T ss_pred CCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeE
Confidence 9999999999999876432221 1111122233334555 457899999963221 11111 2346899
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCC--CCeEEEEEECCCCCCccccC-------HHHHHHHHHhcCCeEEEEcCC-
Q psy3029 182 ALLVFDITQYHSFAAIKTWVKELKRNVDE--PLVLCVVGNKTDLESSREVN-------REEAFHYSKSIGGTYYETSAL- 251 (617)
Q Consensus 182 iIlV~Dis~~~S~~~l~~~l~~i~~~~~~--~iPvIlVgNK~DL~~~~~v~-------~~e~~~~~~~~g~~~~evSAk- 251 (617)
+|||+.+. +-+-.+. ..+..+....+. -..++||.|.+|...+..+. .+....+.+..+-.|+.++.+
T Consensus 87 ~llVi~~~-r~t~~~~-~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~ 164 (212)
T PF04548_consen 87 FLLVIPLG-RFTEEDR-EVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVFNNKT 164 (212)
T ss_dssp EEEEEETT-B-SHHHH-HHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECCTTH
T ss_pred EEEEEecC-cchHHHH-HHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEEeccc
Confidence 99999987 3232221 222233222221 12578899999865443311 122445666677788888776
Q ss_pred -----CCCCHHHHHHHHHHHHH
Q psy3029 252 -----QDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 252 -----tg~gI~eLf~~I~~~l~ 268 (617)
....+.+|++.|-+.+.
T Consensus 165 ~~~~~~~~qv~~Ll~~ie~mv~ 186 (212)
T PF04548_consen 165 KDKEKDESQVSELLEKIEEMVQ 186 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHH
Confidence 22346666666655443
No 319
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=9.2e-07 Score=89.91 Aligned_cols=113 Identities=19% Similarity=0.153 Sum_probs=72.3
Q ss_pred EEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccc--cCHH
Q psy3029 155 VKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSRE--VNRE 232 (617)
Q Consensus 155 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~--v~~~ 232 (617)
-.+.|+|.||++-.-...-.-..-.|++|||++++.+..--.-.+.|..+.-. .- ..+|||-||+||...+. ...+
T Consensus 86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-gi-k~iiIvQNKIDlV~~E~AlE~y~ 163 (415)
T COG5257 86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-GI-KNIIIVQNKIDLVSRERALENYE 163 (415)
T ss_pred EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-cc-ceEEEEecccceecHHHHHHHHH
Confidence 36789999998753322111122368999999998764322222222222221 12 36899999999965432 1234
Q ss_pred HHHHHHHh---cCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 233 EAFHYSKS---IGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 233 e~~~~~~~---~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
++.+|.+. -+.+++.+||.++.||+.|++.|.+.+..
T Consensus 164 qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 164 QIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 44455442 24599999999999999999999887743
No 320
>KOG0080|consensus
Probab=98.57 E-value=5.4e-08 Score=89.15 Aligned_cols=68 Identities=24% Similarity=0.342 Sum_probs=57.0
Q ss_pred CcceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee--cCCCceeeeccC
Q psy3029 329 PNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR--TGLKVSKIPVPT 396 (617)
Q Consensus 329 ~~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~--~~~~~~~~~~~~ 396 (617)
.-+|+.+||.++||||+++.+|..+.|......|||+||..|.+.++|+.++|.|- +|+-.=+.-+|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpS 79 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPS 79 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHh
Confidence 34677888888999999999999999999998999999999999999999999974 455444444444
No 321
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.57 E-value=7.3e-07 Score=94.52 Aligned_cols=151 Identities=19% Similarity=0.203 Sum_probs=104.2
Q ss_pred CCCCHHHHHHHHHcC--CCCC------------ccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCC
Q psy3029 115 LGVGKTSMVVRYIGK--MFSH------------HISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNAN 180 (617)
Q Consensus 115 ~nVGKSSLinrl~~~--~~~~------------~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad 180 (617)
.-=|||||+.+|+.+ .|.+ ......|+++..+...+..+.++++|+||||+.+|....+..++-.|
T Consensus 14 VDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVD 93 (603)
T COG1217 14 VDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVD 93 (603)
T ss_pred ecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcc
Confidence 678999999999853 2211 12234677777777777778899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccc-cCHHHHHHHHHh-------cCCeEEEEcCCC
Q psy3029 181 AALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSRE-VNREEAFHYSKS-------IGGTYYETSALQ 252 (617)
Q Consensus 181 ~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~-v~~~e~~~~~~~-------~g~~~~evSAkt 252 (617)
++++++|+.+..--+. .-.+..... ...+.|||+||+|....+. .-.++...++-. +.+++++.||+.
T Consensus 94 gvlLlVDA~EGpMPQT-rFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~ 169 (603)
T COG1217 94 GVLLLVDASEGPMPQT-RFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARN 169 (603)
T ss_pred eEEEEEEcccCCCCch-hhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccC
Confidence 9999999987431110 001122222 2356679999999875432 112334444433 456899999987
Q ss_pred CC----------CHHHHHHHHHHHHHH
Q psy3029 253 DQ----------GIEDVFLNVSKGLIC 269 (617)
Q Consensus 253 g~----------gI~eLf~~I~~~l~~ 269 (617)
|. ++.-||+.|++.+..
T Consensus 170 G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 170 GTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred ceeccCccccccchhHHHHHHHHhCCC
Confidence 64 577788888877643
No 322
>KOG1486|consensus
Probab=98.56 E-value=1.3e-06 Score=85.88 Aligned_cols=161 Identities=17% Similarity=0.106 Sum_probs=103.2
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCC-CccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~-~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
.+.|+-.|+ .|++++|+|.||||||+..++..... +.|.-| ..+.-.-.+.. +...+++.|.
T Consensus 54 GFeV~KsGd--------------aRValIGfPSVGKStlLs~iT~T~SeaA~yeFT-TLtcIpGvi~y--~ga~IQllDL 116 (364)
T KOG1486|consen 54 GFEVLKSGD--------------ARVALIGFPSVGKSTLLSKITSTHSEAASYEFT-TLTCIPGVIHY--NGANIQLLDL 116 (364)
T ss_pred CeeeeccCC--------------eEEEEecCCCccHHHHHHHhhcchhhhhceeee-EEEeecceEEe--cCceEEEecC
Confidence 456776777 67888888999999999999865422 222211 11111222233 4457899999
Q ss_pred CCccccc-------ccchhhhccCCEEEEEEeCCChhhHHH-HHHHHHHHHhcC---CCC--------------------
Q psy3029 163 AGQERFR-------SMAPMYYRNANAALLVFDITQYHSFAA-IKTWVKELKRNV---DEP-------------------- 211 (617)
Q Consensus 163 ~G~e~~~-------~~~~~~~~~ad~iIlV~Dis~~~S~~~-l~~~l~~i~~~~---~~~-------------------- 211 (617)
||..+-. .+.-...+.+|+++.|.|++..+.-.. +.+-+..+--.. +.+
T Consensus 117 PGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT 196 (364)
T KOG1486|consen 117 PGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLT 196 (364)
T ss_pred cccccccccCCCCCceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccc
Confidence 9964322 122234568999999999987654332 233333221000 000
Q ss_pred ------------------------------------------CeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEc
Q psy3029 212 ------------------------------------------LVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETS 249 (617)
Q Consensus 212 ------------------------------------------iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evS 249 (617)
++++.|-||+|. ++.++...++++-+ -+-+|
T Consensus 197 ~~~ek~i~~ILheykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~-----vs~eevdrlAr~Pn--svViS 269 (364)
T KOG1486|consen 197 HCDEKLIYTILHEYKIHNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ-----VSIEEVDRLARQPN--SVVIS 269 (364)
T ss_pred cccHHHHHHHHHHHeeccceEEEecCCChHHHHHHHhccceEEEEEEEeeccce-----ecHHHHHHHhcCCC--cEEEE
Confidence 788899999995 55677777877643 45578
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q psy3029 250 ALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 250 Aktg~gI~eLf~~I~~~l~ 268 (617)
+.-+.|++.+++.|.+.+.
T Consensus 270 C~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 270 CNMKLNLDRLLERIWEELN 288 (364)
T ss_pred eccccCHHHHHHHHHHHhc
Confidence 8899999999999988764
No 323
>PF06741 LsmAD: LsmAD domain; InterPro: IPR009604 This entry represents a conserved region approximately 250 residues long located on eukaryotic ataxin-2 []. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].
Probab=98.54 E-value=4.2e-08 Score=78.86 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=24.9
Q ss_pred ccCCCCccCCccccccccCCCC-CchHHHHHHHHh
Q psy3029 578 NHNVGTATSSIKMFIFPLIQVA-PYTMEESVLAIQ 611 (617)
Q Consensus 578 ~~~~st~de~l~~yt~~l~~~~-~~~~~~~~~~~~ 611 (617)
|||+|||||+| |||||+++. .|+++| +.|++
T Consensus 1 FGV~stydE~l--YTT~Ld~~~~~~k~~~-~~A~r 32 (72)
T PF06741_consen 1 FGVKSTYDENL--YTTPLDRSDPDYKERE-AEAER 32 (72)
T ss_pred CCCCCccCchh--ceeeccCCCcchHHHH-HHHHH
Confidence 89999999999 999999975 555555 44544
No 324
>KOG0079|consensus
Probab=98.54 E-value=2.8e-08 Score=89.74 Aligned_cols=55 Identities=29% Similarity=0.381 Sum_probs=51.1
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeec
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRT 385 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~ 385 (617)
++.+|||+++||||+++.+|..+.|+..|..|||+||..++|.++|..|+|||-.
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwD 63 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWD 63 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEee
Confidence 5667778889999999999999999999999999999999999999999999854
No 325
>KOG0098|consensus
Probab=98.53 E-value=6.4e-08 Score=91.01 Aligned_cols=58 Identities=24% Similarity=0.251 Sum_probs=54.3
Q ss_pred CCCcceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 327 RVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 327 ~~~~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+...+|+.++|+.+|||||++.||.++.|...+..|||++|..+.+.+|+++|+|||=
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiw 60 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIW 60 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEE
Confidence 4456888999999999999999999999999999999999999999999999999985
No 326
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.53 E-value=3.4e-07 Score=87.85 Aligned_cols=54 Identities=26% Similarity=0.357 Sum_probs=34.6
Q ss_pred hhheeeeccCCCCCCCcceeeeeeecccccccceeccccCc-ccCccCCccceeeEEEEEEECCEEEEEEeecC
Q psy3029 314 ETAKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKM-FSHHISPTIGASFFTAKINVGENKVKLQLRTG 386 (617)
Q Consensus 314 ~~~v~ivG~~~~s~~~~~~~~~~g~~~vGKssi~~~~~~~~-f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~ 386 (617)
.++++++|.| ++|||++++++.+.. ......|.+...+ ..+.++. .+.|--+||
T Consensus 117 ~~~~~~vG~p----------------nvGKSslin~l~~~~~~~~~~~pg~T~~~--~~~~~~~-~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFP----------------NVGKSSLINSLKRSRACNVGATPGVTKSM--QEVHLDK-KVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCC----------------CCCHHHHHHHHhCcccceecCCCCeEcce--EEEEeCC-CEEEEECcC
Confidence 3678888888 999999999999654 3444455554443 3344443 355554555
No 327
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.52 E-value=3.9e-07 Score=96.67 Aligned_cols=160 Identities=14% Similarity=0.170 Sum_probs=79.5
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcce---eEEEEEEEECCeEEEE
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGA---SFFTAKINVGENKVKL 157 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~---~~~~~~i~~~~~~~~l 157 (617)
...+++|+|+|+ +|+|||||||.|.+-...+......|+ +.....+... ..-.+
T Consensus 32 ~~~~l~IaV~G~----------------------sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv 88 (376)
T PF05049_consen 32 DNAPLNIAVTGE----------------------SGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNV 88 (376)
T ss_dssp HH--EEEEEEES----------------------TTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTE
T ss_pred hcCceEEEEECC----------------------CCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCC
Confidence 446689999999 999999999999753221111111111 1112222211 11248
Q ss_pred EEEecCCcccccccchhh-----hccCCEEEEEEeCCChhhHHHHHHHHH-HHHhcCCCCCeEEEEEECCCCC-------
Q psy3029 158 QVWDTAGQERFRSMAPMY-----YRNANAALLVFDITQYHSFAAIKTWVK-ELKRNVDEPLVLCVVGNKTDLE------- 224 (617)
Q Consensus 158 ~i~Dt~G~e~~~~~~~~~-----~~~ad~iIlV~Dis~~~S~~~l~~~l~-~i~~~~~~~iPvIlVgNK~DL~------- 224 (617)
.+||.||..........| +..-|.+|++.+-. |...+-|+. .+.+ .+.|+.+|-+|+|..
T Consensus 89 ~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r----f~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~ 161 (376)
T PF05049_consen 89 TLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER----FTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRR 161 (376)
T ss_dssp EEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS------HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC
T ss_pred eEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC----CchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhcc
Confidence 899999974332223333 44789988887732 444443333 3443 236999999999961
Q ss_pred CccccCH----HHHHHHHH----hcCC---eEEEEcCCCC--CCHHHHHHHHHHHHHHh
Q psy3029 225 SSREVNR----EEAFHYSK----SIGG---TYYETSALQD--QGIEDVFLNVSKGLICL 270 (617)
Q Consensus 225 ~~~~v~~----~e~~~~~~----~~g~---~~~evSAktg--~gI~eLf~~I~~~l~~~ 270 (617)
..+.... +++++.|. ..|+ ++|.||+.+- .....|.+.|.+.+...
T Consensus 162 ~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 162 KPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp -STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 1112222 23333332 2343 6899998854 55778888887766544
No 328
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.52 E-value=3.7e-07 Score=95.51 Aligned_cols=104 Identities=15% Similarity=0.076 Sum_probs=64.4
Q ss_pred EEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCH--
Q psy3029 154 KVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNR-- 231 (617)
Q Consensus 154 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~-- 231 (617)
.+.+.|+||+|.-... ...+..+|.++++.+. .+-+++..+...+. .+|.++|+||+|+........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~---~~~~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIP---GTGDDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecC---CccHHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHH
Confidence 4678899999853211 2346678888888543 33344444433332 257799999999864322110
Q ss_pred HH----HHHHHH---hcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 232 EE----AFHYSK---SIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 232 ~e----~~~~~~---~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
.. ...+.. .+..+++.+||+++.|+++++++|.+.+.
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 00 011111 12236999999999999999999988654
No 329
>KOG0705|consensus
Probab=98.52 E-value=2.3e-07 Score=99.68 Aligned_cols=150 Identities=25% Similarity=0.407 Sum_probs=112.1
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
.++|||+|++|++.+.|.....|.-| .+.+++.+++....+.+.|.+|.. ...|...+|++||||.+.+..+|
T Consensus 39 ~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~~d~~s~ 111 (749)
T KOG0705|consen 39 SQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSVEDEQSF 111 (749)
T ss_pred ccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEEEEeccccCH
Confidence 99999999999999988665554433 356677788888899999998843 34577789999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCCCeEEEEEECCCCC--CccccCHHHHHHHH-HhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 195 AAIKTWVKELKRNV-DEPLVLCVVGNKTDLE--SSREVNREEAFHYS-KSIGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 195 ~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~--~~~~v~~~e~~~~~-~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
+.+..+...+..+. ...+|+++|+++.-.. ..+.+...+..+++ ....+.+|+.+|.+|.+++..|..+..++...
T Consensus 112 q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 112 QAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQL 191 (749)
T ss_pred HHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHH
Confidence 98876555544332 2457889999875442 22334444454444 34456899999999999999999998877665
Q ss_pred h
Q psy3029 271 S 271 (617)
Q Consensus 271 ~ 271 (617)
.
T Consensus 192 ~ 192 (749)
T KOG0705|consen 192 R 192 (749)
T ss_pred H
Confidence 4
No 330
>KOG1144|consensus
Probab=98.51 E-value=2.7e-07 Score=102.07 Aligned_cols=164 Identities=21% Similarity=0.251 Sum_probs=107.5
Q ss_pred CCCCCCccccCCCCCCCCHHHHHHHHHcCCCCC----ccCCCcceeEEEEE--------EEECC----eEEEEEEEecCC
Q psy3029 101 NSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSH----HISPTIGASFFTAK--------INVGE----NKVKLQVWDTAG 164 (617)
Q Consensus 101 ~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~----~~~~t~g~~~~~~~--------i~~~~----~~~~l~i~Dt~G 164 (617)
...+++..|||+|-.-.|||-|+..+.+..... -....+|.+|.... +.-+. .-=-+.++||||
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg 549 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG 549 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence 346888889999999999999999997644321 12234555544322 00011 111377899999
Q ss_pred cccccccchhhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcc------cc------
Q psy3029 165 QERFRSMAPMYYRNANAALLVFDITQY---HSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSR------EV------ 229 (617)
Q Consensus 165 ~e~~~~~~~~~~~~ad~iIlV~Dis~~---~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~------~v------ 229 (617)
++.|..++......||++|+|+|+.+. .+.+.+ ..++ ..+.|+||.+||+|..-.. .+
T Consensus 550 hEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR---~rktpFivALNKiDRLYgwk~~p~~~i~~~lkk 622 (1064)
T KOG1144|consen 550 HESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLR---MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKK 622 (1064)
T ss_pred chhhhhhhhccccccceEEEEeehhccCCcchhHHH----HHHH---hcCCCeEEeehhhhhhcccccCCCchHHHHHHH
Confidence 999999999999999999999999874 333332 2222 2457999999999963110 00
Q ss_pred -----C-------HHHHHHHHHh-cC-------------CeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 230 -----N-------REEAFHYSKS-IG-------------GTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 230 -----~-------~~e~~~~~~~-~g-------------~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
. ...+.+|+.+ ++ +.++++||.+|+||-+|+.+|++......
T Consensus 623 Q~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 623 QKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 0 0011122211 00 25689999999999999999988765544
No 331
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.48 E-value=1.3e-06 Score=102.17 Aligned_cols=106 Identities=17% Similarity=0.132 Sum_probs=67.9
Q ss_pred CCCCHHHHHHHHHcCCC--CCc---------cCC---CcceeEEE----EEEEECCeEEEEEEEecCCcccccccchhhh
Q psy3029 115 LGVGKTSMVVRYIGKMF--SHH---------ISP---TIGASFFT----AKINVGENKVKLQVWDTAGQERFRSMAPMYY 176 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~--~~~---------~~~---t~g~~~~~----~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~ 176 (617)
.++|||||+.+|+...- ... +.+ ..|.++.. ..+...+..+.+.|+||||+.+|.......+
T Consensus 29 ~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l 108 (731)
T PRK07560 29 IDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFGGDVTRAM 108 (731)
T ss_pred CCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChHHHHHHHH
Confidence 99999999999974210 000 000 01111111 1122344568899999999999888888889
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCC
Q psy3029 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLE 224 (617)
Q Consensus 177 ~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~ 224 (617)
+.+|++|+|+|+..........-|. .+.+ ..+|+|+++||+|+.
T Consensus 109 ~~~D~avlVvda~~g~~~~t~~~~~-~~~~---~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 109 RAVDGAIVVVDAVEGVMPQTETVLR-QALR---ERVKPVLFINKVDRL 152 (731)
T ss_pred HhcCEEEEEEECCCCCCccHHHHHH-HHHH---cCCCeEEEEECchhh
Confidence 9999999999987754332222222 2222 235778999999975
No 332
>KOG0410|consensus
Probab=98.47 E-value=1.2e-07 Score=96.32 Aligned_cols=151 Identities=17% Similarity=0.115 Sum_probs=91.5
Q ss_pred CccccCCCCCCCCHHHHHHHHHcCCCCCc--cCCCcceeEEEEEEEECCeEEEEEEEecCCccc---------ccccchh
Q psy3029 106 NCFEANWFWLGVGKTSMVVRYIGKMFSHH--ISPTIGASFFTAKINVGENKVKLQVWDTAGQER---------FRSMAPM 174 (617)
Q Consensus 106 ~~~~~i~G~~nVGKSSLinrl~~~~~~~~--~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~---------~~~~~~~ 174 (617)
...++++|+.|+|||||+++|+....... ...|...+ .+..+... ...+.+.||-|... |... -.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT--~h~a~Lps-g~~vlltDTvGFisdLP~~LvaAF~AT-Le 253 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPT--LHSAHLPS-GNFVLLTDTVGFISDLPIQLVAAFQAT-LE 253 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccch--hhhccCCC-CcEEEEeechhhhhhCcHHHHHHHHHH-HH
Confidence 34455556699999999999985433221 12233222 22233332 23577889998532 2221 22
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCe----EEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcC
Q psy3029 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLV----LCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSA 250 (617)
Q Consensus 175 ~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iP----vIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSA 250 (617)
-+..+|++|-|.|+++|.--......+.-+....-.+.| ++=|-||+|..+... . .+.+ ..+.+||
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-e-------~E~n--~~v~isa 323 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-E-------EEKN--LDVGISA 323 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-c-------cccC--Ccccccc
Confidence 355899999999999997655555455555443322223 455678888743221 1 1122 2677999
Q ss_pred CCCCCHHHHHHHHHHHHHHh
Q psy3029 251 LQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 251 ktg~gI~eLf~~I~~~l~~~ 270 (617)
++|+|++++++.+-..+...
T Consensus 324 ltgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 324 LTGDGLEELLKAEETKVASE 343 (410)
T ss_pred ccCccHHHHHHHHHHHhhhh
Confidence 99999999999887766543
No 333
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.43 E-value=1.3e-06 Score=87.90 Aligned_cols=69 Identities=17% Similarity=0.118 Sum_probs=44.5
Q ss_pred EEEEEEecCCccc-------------ccccchhhhc-cCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEEC
Q psy3029 155 VKLQVWDTAGQER-------------FRSMAPMYYR-NANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNK 220 (617)
Q Consensus 155 ~~l~i~Dt~G~e~-------------~~~~~~~~~~-~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK 220 (617)
..|.++||||... ...+...|++ ..+++++|+|++....-.+..++...+. +...|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 4688999999742 2235667788 4569999999865332222222222222 244699999999
Q ss_pred CCCCCc
Q psy3029 221 TDLESS 226 (617)
Q Consensus 221 ~DL~~~ 226 (617)
+|....
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998653
No 334
>KOG3886|consensus
Probab=98.43 E-value=3.8e-07 Score=88.71 Aligned_cols=141 Identities=23% Similarity=0.333 Sum_probs=86.9
Q ss_pred eEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCC---CCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 85 IKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMF---SHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 85 ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~---~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
-||+++|+ +|+||||+-..+..+.. ......|+.++ .-.+.+- +++.+.+||
T Consensus 5 kKvlLMGr----------------------sGsGKsSmrsiiF~ny~a~D~~rlg~tidve--Hsh~Rfl-Gnl~LnlwD 59 (295)
T KOG3886|consen 5 KKVLLMGR----------------------SGSGKSSMRSIIFANYIARDTRRLGATIDVE--HSHVRFL-GNLVLNLWD 59 (295)
T ss_pred ceEEEecc----------------------CCCCccccchhhhhhhhhhhhhccCCcceee--ehhhhhh-hhheeehhc
Confidence 38999999 99999998765553321 11222333322 2222222 357899999
Q ss_pred cCCccccc-----ccchhhhccCCEEEEEEeCCChhhHHHH---HHHHHHHHhcCCCCCeEEEEEECCCCCCcc--ccCH
Q psy3029 162 TAGQERFR-----SMAPMYYRNANAALLVFDITQYHSFAAI---KTWVKELKRNVDEPLVLCVVGNKTDLESSR--EVNR 231 (617)
Q Consensus 162 t~G~e~~~-----~~~~~~~~~ad~iIlV~Dis~~~S~~~l---~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~--~v~~ 231 (617)
.+|++.+- ......+++.+++++|||+...+-..++ ++-|+.+.++.+. ..+++..+|.||.... +...
T Consensus 60 cGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~-AkiF~l~hKmDLv~~d~r~~if 138 (295)
T KOG3886|consen 60 CGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPE-AKIFCLLHKMDLVQEDARELIF 138 (295)
T ss_pred cCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCc-ceEEEEEeechhcccchHHHHH
Confidence 99997432 2456678899999999999887643444 4445556666554 6789999999996432 2211
Q ss_pred HH----HHHHHHhcCCeEEEEcCC
Q psy3029 232 EE----AFHYSKSIGGTYYETSAL 251 (617)
Q Consensus 232 ~e----~~~~~~~~g~~~~evSAk 251 (617)
++ ...+.+..++.++.+|..
T Consensus 139 ~~r~~~l~~~s~~~~~~~f~Tsiw 162 (295)
T KOG3886|consen 139 QRRKEDLRRLSRPLECKCFPTSIW 162 (295)
T ss_pred HHHHHHHHHhcccccccccccchh
Confidence 21 222233344567777654
No 335
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.42 E-value=1.4e-06 Score=82.49 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=44.4
Q ss_pred EEEEEecCCcc----cccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECC
Q psy3029 156 KLQVWDTAGQE----RFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKT 221 (617)
Q Consensus 156 ~l~i~Dt~G~e----~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~ 221 (617)
.+.|+||||.. ....++..|+..+|++|+|.++....+-.+...|........ ..+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~---~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDK---SRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTC---SSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCC---CeEEEEEcCC
Confidence 47899999973 234677888999999999999988665455554444443322 2488999985
No 336
>KOG2486|consensus
Probab=98.41 E-value=5.6e-07 Score=89.99 Aligned_cols=150 Identities=15% Similarity=0.074 Sum_probs=90.2
Q ss_pred ccccCCCCCCCCHHHHHHHHHcCCCCCccCC-CcceeEEEEEEEECCeEEEEEEEecCCc----------ccccccchhh
Q psy3029 107 CFEANWFWLGVGKTSMVVRYIGKMFSHHISP-TIGASFFTAKINVGENKVKLQVWDTAGQ----------ERFRSMAPMY 175 (617)
Q Consensus 107 ~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~-t~g~~~~~~~i~~~~~~~~l~i~Dt~G~----------e~~~~~~~~~ 175 (617)
.+++++|.+|||||||+|-++..+....... +.|. ++.++...-...+.++|.+|. +.+..+...|
T Consensus 137 pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~---Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 137 PELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGK---TQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred ceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCcc---ceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence 3455556699999999999987655443333 5563 334444444557889999993 3455566666
Q ss_pred hcc---CCEEEEEEeCCChhh-H-HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccc----cCHHHHHH-------HHH
Q psy3029 176 YRN---ANAALLVFDITQYHS-F-AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSRE----VNREEAFH-------YSK 239 (617)
Q Consensus 176 ~~~---ad~iIlV~Dis~~~S-~-~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~----v~~~e~~~-------~~~ 239 (617)
+.+ .-.+++++|++.+-. . .....|+.+ .++|..+|.||||....-. -....+.. -+.
T Consensus 214 ~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f 287 (320)
T KOG2486|consen 214 LLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVF 287 (320)
T ss_pred HHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhhhccccccCccccceeehhhccccce
Confidence 653 334556667655421 1 122345443 4589999999999742211 00011111 111
Q ss_pred hcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy3029 240 SIGGTYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 240 ~~g~~~~evSAktg~gI~eLf~~I~~ 265 (617)
....+++.+|+.++.|+++|+-.|..
T Consensus 288 ~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 288 LVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred eccCCceeeecccccCceeeeeehhh
Confidence 22347888999999999998766543
No 337
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=7.9e-06 Score=86.90 Aligned_cols=149 Identities=16% Similarity=0.083 Sum_probs=96.2
Q ss_pred CCCCHHHHHHHHHcCCCC-CccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhh
Q psy3029 115 LGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHS 193 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~-~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S 193 (617)
---|||||+..+.+..-. .......|.+.+....+....+..+.|+|.+|++++-.-.-..+...|.++||+|.++.-.
T Consensus 9 idHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~ 88 (447)
T COG3276 9 IDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLM 88 (447)
T ss_pred eeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcc
Confidence 677999999999865421 1122334455555555555555689999999999876555555668999999999965432
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 194 FAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSI---GGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 194 ~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~---g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
-+..+ .+..+.. ... ...++|+||+|..++..+ .+...++.... ..++|.+|+++|+||++|.+.|.+..
T Consensus 89 ~qtgE-hL~iLdl-lgi-~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 89 AQTGE-HLLILDL-LGI-KNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred hhhHH-HHHHHHh-cCC-CceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhh
Confidence 22211 1222222 222 246899999998764321 11222222222 34789999999999999999998866
No 338
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.36 E-value=9.9e-07 Score=104.40 Aligned_cols=68 Identities=21% Similarity=0.199 Sum_probs=52.0
Q ss_pred eEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCC
Q psy3029 153 NKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLE 224 (617)
Q Consensus 153 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~ 224 (617)
..+.++++||||+.+|.......++.+|++|+|+|+.......... .+..+.. .++|+|+++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~~~~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH-HHHHHHH---CCCCEEEEEECCccc
Confidence 3678899999999999888888899999999999998764333222 2223322 347999999999986
No 339
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=6.1e-06 Score=86.53 Aligned_cols=41 Identities=10% Similarity=-0.066 Sum_probs=30.9
Q ss_pred CeEEEEEECCCCCCccc-cCHHHHHHHHHhcCCeEEEEcCCC
Q psy3029 212 LVLCVVGNKTDLESSRE-VNREEAFHYSKSIGGTYYETSALQ 252 (617)
Q Consensus 212 iPvIlVgNK~DL~~~~~-v~~~e~~~~~~~~g~~~~evSAkt 252 (617)
.|+++|+||.|...... -..+...+++...+.+++.+||+-
T Consensus 207 KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV~~sA~~ 248 (372)
T COG0012 207 KPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVVPVSAAI 248 (372)
T ss_pred CCeEEEEECCcccccchhHHHHHHHHHhhhcCCcEEEeeHHH
Confidence 89999999999764332 114556677788888999999874
No 340
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.36 E-value=3e-06 Score=87.65 Aligned_cols=139 Identities=17% Similarity=0.206 Sum_probs=74.8
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCc----------cCCCcceeEEEEEEEECCe
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHH----------ISPTIGASFFTAKINVGEN 153 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~----------~~~t~g~~~~~~~i~~~~~ 153 (617)
.++|+|+|. +|+|||||||.|++...... ...+..+......+.-++.
T Consensus 4 ~fnImVvG~----------------------sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~ 61 (281)
T PF00735_consen 4 NFNIMVVGE----------------------SGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGV 61 (281)
T ss_dssp EEEEEEEEC----------------------TTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCE
T ss_pred eEEEEEECC----------------------CCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCc
Confidence 468899998 99999999999997654222 1123333333444455677
Q ss_pred EEEEEEEecCCccccc--------------ccchhhh-------------ccCCEEEEEEeCCChhhHHHHH-HHHHHHH
Q psy3029 154 KVKLQVWDTAGQERFR--------------SMAPMYY-------------RNANAALLVFDITQYHSFAAIK-TWVKELK 205 (617)
Q Consensus 154 ~~~l~i~Dt~G~e~~~--------------~~~~~~~-------------~~ad~iIlV~Dis~~~S~~~l~-~~l~~i~ 205 (617)
.+.+.|+||+|..... .....++ ...|++|++++.+.. .+..++ +.+..+.
T Consensus 62 ~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls 140 (281)
T PF00735_consen 62 KLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLS 140 (281)
T ss_dssp EEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHT
T ss_pred ceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhc
Confidence 8999999999942100 0001111 157899999997652 222322 2344443
Q ss_pred hcCCCCCeEEEEEECCCCCCccccC--HHHHHHHHHhcCCeEEEEc
Q psy3029 206 RNVDEPLVLCVVGNKTDLESSREVN--REEAFHYSKSIGGTYYETS 249 (617)
Q Consensus 206 ~~~~~~iPvIlVgNK~DL~~~~~v~--~~e~~~~~~~~g~~~~evS 249 (617)
..+++|-|+.|+|.....+.. .+.+..-....++.+|...
T Consensus 141 ----~~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 141 ----KRVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp ----TTSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S----
T ss_pred ----ccccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeeccc
Confidence 337899999999986543321 1223344455677666543
No 341
>KOG0087|consensus
Probab=98.35 E-value=3.6e-07 Score=87.88 Aligned_cols=67 Identities=25% Similarity=0.253 Sum_probs=58.5
Q ss_pred cceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEe--ecCCCceeeeccC
Q psy3029 330 NCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL--RTGLKVSKIPVPT 396 (617)
Q Consensus 330 ~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI--~~~~~~~~~~~~~ 396 (617)
-||+++||+++||||-++.||..+.|.-...+|||++|.++++.+|++.|+.|| ++|+---|.-+++
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSa 82 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSA 82 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccch
Confidence 378899999999999999999999999999999999999999999999999997 4566655544433
No 342
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.35 E-value=9.7e-07 Score=93.09 Aligned_cols=170 Identities=20% Similarity=0.158 Sum_probs=102.7
Q ss_pred ecCCc-ccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHH-HH
Q psy3029 161 DTAGQ-ERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFH-YS 238 (617)
Q Consensus 161 Dt~G~-e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~-~~ 238 (617)
+.+|+ .++.......+..+|+|+.|+|+.+|.+... ..+.+.... .|.++|+||+||.+... .++..+ +.
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~~-k~~i~vlNK~DL~~~~~--~~~W~~~~~ 87 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVKE-KPKLLVLNKADLAPKEV--TKKWKKYFK 87 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHcc-CCcEEEEehhhcCCHHH--HHHHHHHHH
Confidence 33554 4566677888899999999999999875432 222222222 35699999999976433 233333 33
Q ss_pred HhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhhhcccccccccccccCCccCCCCCCcccccCCCCCCCCCCchhhhhee
Q psy3029 239 KSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQESLHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLTEAETAKF 318 (617)
Q Consensus 239 ~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ss~~~~~~~~~~~~v~ 318 (617)
.+.+...+.++++++.+...+...+............ .........++.
T Consensus 88 ~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~-------------------------------~~~~~~~~~~v~ 136 (322)
T COG1161 88 KEEGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLK-------------------------------KKGLLKRKIRVG 136 (322)
T ss_pred hcCCCccEEEEeecccCccchHHHHHHHHHHHHHHHh-------------------------------hcCCCccceEEE
Confidence 3446778889999998888777544432211110000 011112245678
Q ss_pred eeccCCCCCCCcceeeeeeecccccccceeccccCcc-cCccCCccceeeEEEEEEECCEEEEEEeecCCC
Q psy3029 319 VVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMF-SHHISPTIGASFFTAKINVGENKVKLQLRTGLK 388 (617)
Q Consensus 319 ivG~~~~s~~~~~~~~~~g~~~vGKssi~~~~~~~~f-~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~ 388 (617)
+||-| +||||+++++++...- .+...|++.... ..|.++.. +.|--+||..
T Consensus 137 vvG~P----------------NVGKSslIN~L~~k~~~~~s~~PG~Tk~~--q~i~~~~~-i~LlDtPGii 188 (322)
T COG1161 137 VVGYP----------------NVGKSTLINRLLGKKVAKTSNRPGTTKGI--QWIKLDDG-IYLLDTPGII 188 (322)
T ss_pred EEcCC----------------CCcHHHHHHHHhcccceeeCCCCceecce--EEEEcCCC-eEEecCCCcC
Confidence 88877 9999999999997654 444456444333 44555555 3333355553
No 343
>PTZ00416 elongation factor 2; Provisional
Probab=98.35 E-value=1.5e-06 Score=102.84 Aligned_cols=67 Identities=21% Similarity=0.223 Sum_probs=51.3
Q ss_pred EEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCC
Q psy3029 154 KVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLE 224 (617)
Q Consensus 154 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~ 224 (617)
...+.|+||||+.+|.......++.+|++|+|+|+......... ..+..+.. .++|+|+++||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH---cCCCEEEEEEChhhh
Confidence 57799999999998887778889999999999998875433322 22333333 347999999999985
No 344
>KOG1532|consensus
Probab=98.33 E-value=6.2e-06 Score=82.34 Aligned_cols=113 Identities=20% Similarity=0.191 Sum_probs=66.5
Q ss_pred EEEEEEEecCCccccc------ccchhhhc--cCCEEEEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCeEEEEEECCC
Q psy3029 154 KVKLQVWDTAGQERFR------SMAPMYYR--NANAALLVFDITQ---YHSFAAIKTWVKELKRNVDEPLVLCVVGNKTD 222 (617)
Q Consensus 154 ~~~l~i~Dt~G~e~~~------~~~~~~~~--~ad~iIlV~Dis~---~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~D 222 (617)
.....++||||+.+.. .++-..+. .--++++|+|... +.+|-. ..+-...-....++|.|+|.||+|
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMS--NMlYAcSilyktklp~ivvfNK~D 192 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMS--NMLYACSILYKTKLPFIVVFNKTD 192 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHH--HHHHHHHHHHhccCCeEEEEeccc
Confidence 3468899999985321 12222222 3457778888543 333432 222222222235589999999999
Q ss_pred CCCccc----cC----HHHHH--------------------HHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 223 LESSRE----VN----REEAF--------------------HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 223 L~~~~~----v~----~~e~~--------------------~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
+.+..- .. .+++. +|+ .++..+-|||.+|.|.+++|..+...+.+.
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY--~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFY--RSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHH--hhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 965311 00 01111 111 135789999999999999999998766554
No 345
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.32 E-value=4.7e-06 Score=93.09 Aligned_cols=109 Identities=15% Similarity=0.127 Sum_probs=63.6
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEE-EEEEEECCeEEEEEEEecCCccccc-------c---cchhhhc--cCCE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFF-TAKINVGENKVKLQVWDTAGQERFR-------S---MAPMYYR--NANA 181 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~-~~~i~~~~~~~~l~i~Dt~G~e~~~-------~---~~~~~~~--~ad~ 181 (617)
+|||||||+|.|++...........+.+.. ......+ ...+.|+||||..... . .+..+++ ..|+
T Consensus 127 TGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id--G~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDV 204 (763)
T TIGR00993 127 SGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ--GVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDI 204 (763)
T ss_pred CCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC--CceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCE
Confidence 999999999999987532221111222211 1122223 3568999999975421 1 1222434 4899
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCC--CeEEEEEECCCCCC
Q psy3029 182 ALLVFDITQYHSFAAIKTWVKELKRNVDEP--LVLCVVGNKTDLES 225 (617)
Q Consensus 182 iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~--iPvIlVgNK~DL~~ 225 (617)
+|+|..+........-..++..|.+.+... .-+|||.|+.|...
T Consensus 205 VLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 205 VLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred EEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 999988754322212224566665554421 25799999999864
No 346
>KOG0458|consensus
Probab=98.30 E-value=5.7e-06 Score=90.33 Aligned_cols=143 Identities=20% Similarity=0.187 Sum_probs=93.1
Q ss_pred CCCCHHHHHHHHHcC--------------------CCC---------CccCCCcceeEEEEEEEECCeEEEEEEEecCCc
Q psy3029 115 LGVGKTSMVVRYIGK--------------------MFS---------HHISPTIGASFFTAKINVGENKVKLQVWDTAGQ 165 (617)
Q Consensus 115 ~nVGKSSLinrl~~~--------------------~~~---------~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~ 165 (617)
..+|||||+-+++.. +.. .....-.|++.......++-....+.|+|+||+
T Consensus 186 VdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~~~tliDaPGh 265 (603)
T KOG0458|consen 186 VDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSKIVTLIDAPGH 265 (603)
T ss_pred cccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCceeEEEecCCCc
Confidence 999999999998632 000 012234566677777777777788999999998
Q ss_pred ccccccchhhhccCCEEEEEEeCCChh---hHHH---HHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHH----H
Q psy3029 166 ERFRSMAPMYYRNANAALLVFDITQYH---SFAA---IKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEA----F 235 (617)
Q Consensus 166 e~~~~~~~~~~~~ad~iIlV~Dis~~~---S~~~---l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~----~ 235 (617)
..|..-.-.-...+|+++||+|++-.. +|+. ..+.. .+.+...- ..+||++||+|+.+-.+-..+++ .
T Consensus 266 kdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha-~llr~Lgi-~qlivaiNKmD~V~Wsq~RF~eIk~~l~ 343 (603)
T KOG0458|consen 266 KDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHA-LLLRSLGI-SQLIVAINKMDLVSWSQDRFEEIKNKLS 343 (603)
T ss_pred cccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHH-HHHHHcCc-ceEEEEeecccccCccHHHHHHHHHHHH
Confidence 877654444556899999999987643 2331 12222 22333332 36899999999976443333332 2
Q ss_pred HHH-HhcC-----CeEEEEcCCCCCCHHHH
Q psy3029 236 HYS-KSIG-----GTYYETSALQDQGIEDV 259 (617)
Q Consensus 236 ~~~-~~~g-----~~~~evSAktg~gI~eL 259 (617)
.|. +..| +.|++||+.+|+|+-..
T Consensus 344 ~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 344 SFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHhcCcccCCcceEecccccCCccccc
Confidence 334 3344 37999999999997544
No 347
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.29 E-value=9.4e-07 Score=90.86 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=39.6
Q ss_pred CeEEEEEECCCCCCccccCHHHHHHHHHhc--CCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 212 LVLCVVGNKTDLESSREVNREEAFHYSKSI--GGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 212 iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~--g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
..-++|+||+|+........+...+.++.. ..+++.+||++|+|+++++++|..+
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 355899999999753222233344444443 4689999999999999999999764
No 348
>KOG0086|consensus
Probab=98.29 E-value=4.1e-07 Score=82.64 Aligned_cols=55 Identities=31% Similarity=0.362 Sum_probs=51.9
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeec
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRT 385 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~ 385 (617)
+|.+++|+++.||||++++|+++.|.+....|||++|.++.|.++++.|+|||-.
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWD 64 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWD 64 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEee
Confidence 6788889999999999999999999999999999999999999999999999853
No 349
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.26 E-value=1.2e-05 Score=84.76 Aligned_cols=118 Identities=18% Similarity=0.182 Sum_probs=80.8
Q ss_pred eEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhcC-CCCCeEEEEEECC
Q psy3029 153 NKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQY----------HSFAAIKTWVKELKRNV-DEPLVLCVVGNKT 221 (617)
Q Consensus 153 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~----------~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~ 221 (617)
..+.+.+||++|+...+..|..++.+++++|||+|+++. ..+.+....+..+.... -.++|++|++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 468899999999999999999999999999999999874 12333333333333221 1457999999999
Q ss_pred CCCCcc----------------ccCHHHHHHHHHh----------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 222 DLESSR----------------EVNREEAFHYSKS----------IGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 222 DL~~~~----------------~v~~~e~~~~~~~----------~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
|+..++ .-..+.+..|... ..+-++.++|..-.++..+|+.+.+.+...
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 973211 1223444433321 123456788888899999998888877653
No 350
>KOG0461|consensus
Probab=98.26 E-value=6.5e-06 Score=84.34 Aligned_cols=158 Identities=18% Similarity=0.230 Sum_probs=91.6
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcC----CCCCccC-CCcceeE----EEEEEEE---
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGK----MFSHHIS-PTIGASF----FTAKINV--- 150 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~----~~~~~~~-~t~g~~~----~~~~i~~--- 150 (617)
.++++.++|- --+|||||..+|..- .|..... .+.|.+. ....+..
T Consensus 6 ~n~N~GiLGH----------------------vDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~par 63 (522)
T KOG0461|consen 6 SNLNLGILGH----------------------VDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPAR 63 (522)
T ss_pred ceeeeeeEee----------------------ccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccc
Confidence 3467888888 899999999999632 2222211 1122221 1111111
Q ss_pred --CCeEEEEEEEecCCcccccccchhhhc---cCCEEEEEEeCCChhhHHHHHH-HHHHHHhcCCCCCeEEEEEECCCCC
Q psy3029 151 --GENKVKLQVWDTAGQERFRSMAPMYYR---NANAALLVFDITQYHSFAAIKT-WVKELKRNVDEPLVLCVVGNKTDLE 224 (617)
Q Consensus 151 --~~~~~~l~i~Dt~G~e~~~~~~~~~~~---~ad~iIlV~Dis~~~S~~~l~~-~l~~i~~~~~~~iPvIlVgNK~DL~ 224 (617)
.+....+.++|+||+.. +++..+- -.|..++|+|+.....-+..+- .+.++. + ...|||+||+|+.
T Consensus 64 Lpq~e~lq~tlvDCPGHas---LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~--c---~klvvvinkid~l 135 (522)
T KOG0461|consen 64 LPQGEQLQFTLVDCPGHAS---LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL--C---KKLVVVINKIDVL 135 (522)
T ss_pred cCccccceeEEEeCCCcHH---HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh--c---cceEEEEeccccc
Confidence 34567899999999854 3444443 4688899999876432121111 122221 1 2467889999986
Q ss_pred Ccccc--CH-HHHHHHHHhc-------CCeEEEEcCCCC----CCHHHHHHHHHHHHHHh
Q psy3029 225 SSREV--NR-EEAFHYSKSI-------GGTYYETSALQD----QGIEDVFLNVSKGLICL 270 (617)
Q Consensus 225 ~~~~v--~~-~e~~~~~~~~-------g~~~~evSAktg----~gI~eLf~~I~~~l~~~ 270 (617)
.+.+- .. +...++.+.+ +.|++++||+.| ++|.+|.+.|...+...
T Consensus 136 pE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 136 PENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred cchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 54221 11 1122222221 258999999999 77888877777766543
No 351
>KOG0093|consensus
Probab=98.24 E-value=9.2e-07 Score=80.03 Aligned_cols=57 Identities=25% Similarity=0.263 Sum_probs=52.7
Q ss_pred CCcceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 328 VPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 328 ~~~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
.-.+|+.++|.++|||++++.||++++|...|..|+|++|..|+|.-.++.|+|||-
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiw 75 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIW 75 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEE
Confidence 334688889999999999999999999999999999999999999999999999984
No 352
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.22 E-value=2e-05 Score=83.87 Aligned_cols=132 Identities=19% Similarity=0.158 Sum_probs=87.4
Q ss_pred cCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChh----------hHHHHHHHHHHH
Q psy3029 135 ISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYH----------SFAAIKTWVKEL 204 (617)
Q Consensus 135 ~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~----------S~~~l~~~l~~i 204 (617)
..||.|+..... .+ ..+.+.+||.+|+...+..|..++.+++++|||+|+++.. .+.+....+..+
T Consensus 168 r~~T~Gi~~~~f--~~--~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l 243 (342)
T smart00275 168 RVPTTGIQETAF--IV--KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESI 243 (342)
T ss_pred eCCccceEEEEE--EE--CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHH
Confidence 346777653332 22 4577899999999988999999999999999999999732 233333334443
Q ss_pred Hhc-CCCCCeEEEEEECCCCCCcc---------------ccCHHHHHHHHHh-----------cCCeEEEEcCCCCCCHH
Q psy3029 205 KRN-VDEPLVLCVVGNKTDLESSR---------------EVNREEAFHYSKS-----------IGGTYYETSALQDQGIE 257 (617)
Q Consensus 205 ~~~-~~~~iPvIlVgNK~DL~~~~---------------~v~~~e~~~~~~~-----------~g~~~~evSAktg~gI~ 257 (617)
... .-.++|++|++||.|+..+. ....+.+..|... ..+-++.++|.+-.++.
T Consensus 244 ~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~ 323 (342)
T smart00275 244 CNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIR 323 (342)
T ss_pred HcCccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHH
Confidence 332 12458999999999984221 0123333333221 11345678899999999
Q ss_pred HHHHHHHHHHHHh
Q psy3029 258 DVFLNVSKGLICL 270 (617)
Q Consensus 258 eLf~~I~~~l~~~ 270 (617)
.+|+.+...+...
T Consensus 324 ~v~~~v~~~I~~~ 336 (342)
T smart00275 324 VVFDAVKDIILQR 336 (342)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888777654
No 353
>KOG1547|consensus
Probab=98.01 E-value=5.2e-05 Score=74.41 Aligned_cols=130 Identities=22% Similarity=0.265 Sum_probs=73.4
Q ss_pred CCCCHHHHHHHHHcCCCCC---------ccCCCcceeEEEEEEEECCeEEEEEEEecCCccc-------------c-ccc
Q psy3029 115 LGVGKTSMVVRYIGKMFSH---------HISPTIGASFFTAKINVGENKVKLQVWDTAGQER-------------F-RSM 171 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~---------~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~-------------~-~~~ 171 (617)
+|.|||||+|.+....... .+..|..+...+..+.-++-..++.++||||.-+ | +.+
T Consensus 55 SglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI~kyIneQ 134 (336)
T KOG1547|consen 55 SGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQ 134 (336)
T ss_pred CCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHHHHHHHHHH
Confidence 9999999999986433211 1223333333334444466778999999999521 1 122
Q ss_pred chhhhc--------------cCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCeEEEEEECCCCCC--ccccCHHHH
Q psy3029 172 APMYYR--------------NANAALLVFDITQYHSFAAIK-TWVKELKRNVDEPLVLCVVGNKTDLES--SREVNREEA 234 (617)
Q Consensus 172 ~~~~~~--------------~ad~iIlV~Dis~~~S~~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~--~~~v~~~e~ 234 (617)
...|++ .++++++.+..+. .++..++ ++++.+.+. +.||-|+-|+|-.. ++..-.+.+
T Consensus 135 ye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~v----vNvvPVIakaDtlTleEr~~FkqrI 209 (336)
T KOG1547|consen 135 YEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTEV----VNVVPVIAKADTLTLEERSAFKQRI 209 (336)
T ss_pred HHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhhh----heeeeeEeecccccHHHHHHHHHHH
Confidence 223332 4778888887654 3455444 344444332 45677889999642 222223344
Q ss_pred HHHHHhcCCeEEEEc
Q psy3029 235 FHYSKSIGGTYYETS 249 (617)
Q Consensus 235 ~~~~~~~g~~~~evS 249 (617)
++-...+++.++.--
T Consensus 210 ~~el~~~~i~vYPq~ 224 (336)
T KOG1547|consen 210 RKELEKHGIDVYPQD 224 (336)
T ss_pred HHHHHhcCccccccc
Confidence 445556677666443
No 354
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.01 E-value=5.7e-06 Score=80.01 Aligned_cols=53 Identities=21% Similarity=0.344 Sum_probs=48.7
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
|++++|..+||||+++.+|+.+.|...|.||+|.+|..+.+.++++.++|+|-
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iw 54 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIW 54 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEE
Confidence 56777777999999999999999999999999999999999999999999975
No 355
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.00 E-value=4.7e-05 Score=73.06 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=41.8
Q ss_pred EEEEECCCCCCccccCHHHHHHHHHhcC--CeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 215 CVVGNKTDLESSREVNREEAFHYSKSIG--GTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 215 IlVgNK~DL~~~~~v~~~e~~~~~~~~g--~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
++|+||.||.+.-..+.+...+-+++.+ .+++++|+++|+|++++++++....
T Consensus 146 llVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 146 LLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred EEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 6899999997665555565555565554 5999999999999999999987643
No 356
>KOG0097|consensus
Probab=98.00 E-value=3.9e-06 Score=75.25 Aligned_cols=55 Identities=31% Similarity=0.338 Sum_probs=51.1
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeec
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRT 385 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~ 385 (617)
||-.+||+.+|||||++++|.++.|...-..|||+.|.++.|++-|+.++|||-.
T Consensus 12 fkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwd 66 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 66 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEee
Confidence 5667889999999999999999999998889999999999999999999999854
No 357
>KOG0083|consensus
Probab=97.99 E-value=4e-06 Score=74.58 Aligned_cols=52 Identities=27% Similarity=0.349 Sum_probs=47.1
Q ss_pred eeeeecccccccceeccccCccc-CccCCccceeeEEEEEEECCEEEEEEeec
Q psy3029 334 ANWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQLRT 385 (617)
Q Consensus 334 ~~~g~~~vGKssi~~~~~~~~f~-~~~~pTIg~df~~k~v~~d~~~v~LqI~~ 385 (617)
+++|++++||+|++.||-.+.|. ..+.+|+|.||..|.+.++++.|+|||-.
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwd 53 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWD 53 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEee
Confidence 46788999999999999999885 56799999999999999999999999853
No 358
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.98 E-value=1.3e-05 Score=74.08 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=38.9
Q ss_pred ccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCc
Q psy3029 109 EANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQ 165 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~ 165 (617)
++++|.+|||||||+|+|++.... ......|.+.....+.+++ .+.||||||.
T Consensus 86 ~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 86 IGLVGYPNVGKSSLINALVGKKKV-SVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEECCCCCCHHHHHHHHhCCCce-eeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 444444999999999999987753 4555666666666666654 4799999996
No 359
>KOG2655|consensus
Probab=97.98 E-value=9.7e-05 Score=77.75 Aligned_cols=133 Identities=19% Similarity=0.226 Sum_probs=77.3
Q ss_pred CCCCHHHHHHHHHcCCCCC---------ccCCCcceeEEEEEEEECCeEEEEEEEecCCccc-------c-------ccc
Q psy3029 115 LGVGKTSMVVRYIGKMFSH---------HISPTIGASFFTAKINVGENKVKLQVWDTAGQER-------F-------RSM 171 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~---------~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~-------~-------~~~ 171 (617)
+|.|||||+|.|+...+.. ....+..+......+.-++-.+.+.++||||.-+ | ...
T Consensus 30 sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q 109 (366)
T KOG2655|consen 30 SGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQ 109 (366)
T ss_pred CCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchhhhHHHHHH
Confidence 9999999999998764432 1223444444444444467788999999998521 0 011
Q ss_pred chhh-----------hc--cCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCccccC--HHHHH
Q psy3029 172 APMY-----------YR--NANAALLVFDITQYHSFAAIK-TWVKELKRNVDEPLVLCVVGNKTDLESSREVN--REEAF 235 (617)
Q Consensus 172 ~~~~-----------~~--~ad~iIlV~Dis~~~S~~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~--~~e~~ 235 (617)
.+.| +. .++++|+.+..+.. .+..++ ..+..+. ..+.+|-|+-|+|.....+.. .+.+.
T Consensus 110 ~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~El~~~K~~I~ 184 (366)
T KOG2655|consen 110 FDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKDELNQFKKRIR 184 (366)
T ss_pred HHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccCCHHHHHHHHHHHH
Confidence 1122 22 57899999886542 233333 2223332 336778888999986543321 23344
Q ss_pred HHHHhcCCeEEEEcCCC
Q psy3029 236 HYSKSIGGTYYETSALQ 252 (617)
Q Consensus 236 ~~~~~~g~~~~evSAkt 252 (617)
+.....++++|....-.
T Consensus 185 ~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 185 QDIEEHNIKVFDFPTDE 201 (366)
T ss_pred HHHHHcCcceecCCCCc
Confidence 45556667666554443
No 360
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.97 E-value=1.8e-05 Score=74.52 Aligned_cols=47 Identities=21% Similarity=0.295 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCc
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQ 165 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~ 165 (617)
||||||||+|+|.+.. .....++.|.+.....+.... .+.++||||.
T Consensus 111 ~nvGKStliN~l~~~~-~~~~~~~~g~T~~~~~~~~~~---~~~liDtPGi 157 (157)
T cd01858 111 PNVGKSSIINTLRSKK-VCKVAPIPGETKVWQYITLMK---RIYLIDCPGV 157 (157)
T ss_pred CCCChHHHHHHHhcCC-ceeeCCCCCeeEeEEEEEcCC---CEEEEECcCC
Confidence 9999999999999876 445566777766554444332 3779999994
No 361
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.97 E-value=5.1e-05 Score=79.23 Aligned_cols=128 Identities=22% Similarity=0.286 Sum_probs=77.1
Q ss_pred CCCCHHHHHHHHHcCCCCCc----------cCCCcceeEEEEEEEECCeEEEEEEEecCCcccc--------------cc
Q psy3029 115 LGVGKTSMVVRYIGKMFSHH----------ISPTIGASFFTAKINVGENKVKLQVWDTAGQERF--------------RS 170 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~----------~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~--------------~~ 170 (617)
.|.|||||+|.|++...... ..+++.+......+.-++..+.+.++||+|.-++ ..
T Consensus 32 sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~ 111 (373)
T COG5019 32 SGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDD 111 (373)
T ss_pred CCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHHHHHH
Confidence 99999999999987633211 3355555555555555777899999999995211 11
Q ss_pred cchhhhc--------------cCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCcccc--CHHH
Q psy3029 171 MAPMYYR--------------NANAALLVFDITQYHSFAAIK-TWVKELKRNVDEPLVLCVVGNKTDLESSREV--NREE 233 (617)
Q Consensus 171 ~~~~~~~--------------~ad~iIlV~Dis~~~S~~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v--~~~e 233 (617)
+.+.|+. .++++|+.+-.+. ..+..++ +.+..+.. .+-+|-|+-|+|.....+. ..+.
T Consensus 112 q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~lT~~El~~~K~~ 186 (373)
T COG5019 112 QFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK----RVNLIPVIAKADTLTDDELAEFKER 186 (373)
T ss_pred HHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc----ccCeeeeeeccccCCHHHHHHHHHH
Confidence 1222221 4789999887654 2333333 23333333 2567778899998654332 1234
Q ss_pred HHHHHHhcCCeEEE
Q psy3029 234 AFHYSKSIGGTYYE 247 (617)
Q Consensus 234 ~~~~~~~~g~~~~e 247 (617)
+.+....+++++|.
T Consensus 187 I~~~i~~~nI~vf~ 200 (373)
T COG5019 187 IREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHhCCceeC
Confidence 44555666777773
No 362
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.93 E-value=2e-05 Score=75.61 Aligned_cols=47 Identities=19% Similarity=0.336 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCc
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQ 165 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~ 165 (617)
||||||||+|+|.+.. .....+.+|.+.....+.++. .+.++||||.
T Consensus 126 pnvGKSslin~l~~~~-~~~~~~~pg~T~~~~~~~~~~---~~~l~DtPGi 172 (172)
T cd04178 126 PNVGKSSLINSLKRSR-ACNVGATPGVTKSMQEVHLDK---KVKLLDSPGI 172 (172)
T ss_pred CCCCHHHHHHHHhCcc-cceecCCCCeEcceEEEEeCC---CEEEEECcCC
Confidence 9999999999999876 345567778877665555432 4789999984
No 363
>KOG1487|consensus
Probab=97.91 E-value=2.2e-05 Score=77.76 Aligned_cols=153 Identities=16% Similarity=0.043 Sum_probs=90.6
Q ss_pred ccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccc-------cccchhhhccC
Q psy3029 107 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERF-------RSMAPMYYRNA 179 (617)
Q Consensus 107 ~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~-------~~~~~~~~~~a 179 (617)
.+|.++|+|.||||||+..+++-.. ....-.+.+..+..-.+..+.-++++.|.||..+- ..+.-...+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s--~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFS--EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCC--ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 5788889999999999999987532 11111121211211112223457999999986321 11222345579
Q ss_pred CEEEEEEeCCChhhHHHH-HHHHHHHHhcC---C----------------------------------------------
Q psy3029 180 NAALLVFDITQYHSFAAI-KTWVKELKRNV---D---------------------------------------------- 209 (617)
Q Consensus 180 d~iIlV~Dis~~~S~~~l-~~~l~~i~~~~---~---------------------------------------------- 209 (617)
+++++|.|+-.|-+-..+ ++-++.+--.. +
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT 217 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT 217 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence 999999998876553332 12221110000 0
Q ss_pred ------------CCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 210 ------------EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 210 ------------~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
.-+|.+.+.||+|-.. .++..-+++ ....+.+||.++.|++++++.+.+.+.
T Consensus 218 ~DdLIdvVegnr~yVp~iyvLNkIdsIS-----iEELdii~~--iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 218 ADDLIDVVEGNRIYVPCIYVLNKIDSIS-----IEELDIIYT--IPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhhhhhhccCceeeeeeeeecccceee-----eeccceeee--ccceeecccccccchHHHHHHHhhcch
Confidence 0178888899998643 222211111 125789999999999999998877653
No 364
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.91 E-value=9.1e-05 Score=75.48 Aligned_cols=107 Identities=18% Similarity=0.178 Sum_probs=63.4
Q ss_pred EEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHH
Q psy3029 155 VKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEA 234 (617)
Q Consensus 155 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~ 234 (617)
+.+.|+.|.|.-+-. -....-+|.+++|.-..-.+..+-++. .+.+.. =|+|+||.|...... ...+.
T Consensus 144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~---GimEia-----Di~vINKaD~~~A~~-a~r~l 211 (323)
T COG1703 144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKA---GIMEIA-----DIIVINKADRKGAEK-AAREL 211 (323)
T ss_pred CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHh---hhhhhh-----heeeEeccChhhHHH-HHHHH
Confidence 456777776642211 112345888888886655555555553 222222 178999999643211 11111
Q ss_pred ---HHHH----Hh--cCCeEEEEcCCCCCCHHHHHHHHHHHHHHhhhc
Q psy3029 235 ---FHYS----KS--IGGTYYETSALQDQGIEDVFLNVSKGLICLSQE 273 (617)
Q Consensus 235 ---~~~~----~~--~g~~~~evSAktg~gI~eLf~~I~~~l~~~~~~ 273 (617)
..+. .. +.-+++.+||.+|+|+++|++.|.+........
T Consensus 212 ~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~s 259 (323)
T COG1703 212 RSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTES 259 (323)
T ss_pred HHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 1111 11 123899999999999999999998877655433
No 365
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.90 E-value=1.1e-05 Score=79.56 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=47.4
Q ss_pred eeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 333 EANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 333 ~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++|..+|||||++.||..+.|...|.||+|.+|..+.+.++++.++|+|-
T Consensus 3 vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iw 54 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIW 54 (202)
T ss_pred EEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEE
Confidence 4566777999999999999999999999999999999999999999999875
No 366
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.90 E-value=1.2e-05 Score=76.67 Aligned_cols=54 Identities=26% Similarity=0.290 Sum_probs=48.6
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
||++++|..++|||+++++|+.+.|...|.||+|.+|..+.+.+++..+.|+|-
T Consensus 1 ~ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~ 54 (170)
T cd04108 1 SKVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLW 54 (170)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEE
Confidence 467777777999999999999999999999999999988999999988888863
No 367
>KOG0468|consensus
Probab=97.89 E-value=5e-05 Score=83.73 Aligned_cols=107 Identities=20% Similarity=0.257 Sum_probs=73.5
Q ss_pred CCCCCCHHHHHHHHHcCCCCCc---------cC------CCcceeEEEEEEEE-----CCeEEEEEEEecCCcccccccc
Q psy3029 113 FWLGVGKTSMVVRYIGKMFSHH---------IS------PTIGASFFTAKINV-----GENKVKLQVWDTAGQERFRSMA 172 (617)
Q Consensus 113 G~~nVGKSSLinrl~~~~~~~~---------~~------~t~g~~~~~~~i~~-----~~~~~~l~i~Dt~G~e~~~~~~ 172 (617)
|.-+.|||+|+.-|..+....- |. ...|..+......+ .++.+-++++||+|+-.|....
T Consensus 135 GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE~ 214 (971)
T KOG0468|consen 135 GHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSDET 214 (971)
T ss_pred eccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccchHHH
Confidence 3499999999999976543221 11 11222222222221 4567889999999999888878
Q ss_pred hhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCC
Q psy3029 173 PMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDL 223 (617)
Q Consensus 173 ~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL 223 (617)
-..++-+|++++|+|+.+.-.+.. .+.++... ....|+++|+||+|.
T Consensus 215 ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhai---q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 215 TASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAI---QNRLPIVVVINKVDR 261 (971)
T ss_pred HHHhhhcceEEEEEEcccCceeeH-HHHHHHHH---hccCcEEEEEehhHH
Confidence 888999999999999988766543 22233322 245799999999996
No 368
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.86 E-value=1.4e-05 Score=77.05 Aligned_cols=53 Identities=21% Similarity=0.344 Sum_probs=47.8
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+|++++|..+||||+++.+|..+.|...|.||++.+| .+.+.++++.++|+|-
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iw 54 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLW 54 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEE
Confidence 5677888889999999999999999999999999888 5789999999999875
No 369
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=0.00016 Score=83.09 Aligned_cols=107 Identities=18% Similarity=0.187 Sum_probs=75.7
Q ss_pred CCCCHHHHHHHHHcC--CCCC--c------------cCCCcceeEEEEEEEECCe-EEEEEEEecCCcccccccchhhhc
Q psy3029 115 LGVGKTSMVVRYIGK--MFSH--H------------ISPTIGASFFTAKINVGEN-KVKLQVWDTAGQERFRSMAPMYYR 177 (617)
Q Consensus 115 ~nVGKSSLinrl~~~--~~~~--~------------~~~t~g~~~~~~~i~~~~~-~~~l~i~Dt~G~e~~~~~~~~~~~ 177 (617)
-..|||||..+++-. .... . .....|+++......+... .+.++++||||+-+|.......++
T Consensus 19 idaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslr 98 (697)
T COG0480 19 IDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLR 98 (697)
T ss_pred cCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccHHHHHHHHH
Confidence 899999999999621 1110 1 1123455555555555555 589999999999999999999999
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCC
Q psy3029 178 NANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLES 225 (617)
Q Consensus 178 ~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~ 225 (617)
-+|++|+|+|+...-..+.-.-|... . ...+|.++++||+|...
T Consensus 99 vlDgavvVvdaveGV~~QTEtv~rqa-~---~~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 99 VLDGAVVVVDAVEGVEPQTETVWRQA-D---KYGVPRILFVNKMDRLG 142 (697)
T ss_pred hhcceEEEEECCCCeeecHHHHHHHH-h---hcCCCeEEEEECccccc
Confidence 99999999999876443332233332 2 24589999999999753
No 370
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.83 E-value=1.6e-05 Score=77.02 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=47.2
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+|++++|..+|||||++.+|+.+.|...|.||++.+| .+.+.++++.++|+|-
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iw 58 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLW 58 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEE
Confidence 5666777779999999999999999999999999888 6889999999999975
No 371
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.83 E-value=1.6e-05 Score=80.05 Aligned_cols=55 Identities=24% Similarity=0.273 Sum_probs=48.8
Q ss_pred CcceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 329 PNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 329 ~~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
..+|++++|..+||||+++.+|+.+.|...|.||||.+| .+.+.++++.++|+|-
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iw 66 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLW 66 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEE
Confidence 346777778889999999999999999999999999998 5679999999999875
No 372
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.82 E-value=4.2e-05 Score=73.15 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCc
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQ 165 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~ 165 (617)
+|||||||+|+|++..+. ...+..+.++....+.++ ..+.+|||||.
T Consensus 124 ~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 124 PNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 999999999999987753 445566666666555554 35789999995
No 373
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.81 E-value=1.9e-05 Score=76.09 Aligned_cols=53 Identities=30% Similarity=0.326 Sum_probs=47.5
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+|++++|..+||||+++.+|+.+.|...|.||+|..| .+.+.++++.++|+|-
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~ 54 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLW 54 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEE
Confidence 4677777889999999999999999999999999888 6778999999999987
No 374
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.81 E-value=5.2e-05 Score=71.15 Aligned_cols=47 Identities=28% Similarity=0.371 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCc
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQ 165 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~ 165 (617)
+|||||||+|+|.+.. ...+.++.|.+.....+..+. .+.+|||||.
T Consensus 110 ~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi 156 (156)
T cd01859 110 PNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITS---KIYLLDTPGV 156 (156)
T ss_pred CCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence 9999999999999765 456677888765443333332 5899999994
No 375
>KOG0091|consensus
Probab=97.80 E-value=3.7e-06 Score=77.54 Aligned_cols=55 Identities=27% Similarity=0.323 Sum_probs=49.8
Q ss_pred cceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEE-CCEEEEEEee
Q psy3029 330 NCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINV-GENKVKLQLR 384 (617)
Q Consensus 330 ~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~-d~~~v~LqI~ 384 (617)
.+.+.+||++-|||||++.+|.++.|.+...||+|+||+.+.+++ +|..|+||+-
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlw 63 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLW 63 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEe
Confidence 356778899999999999999999999999999999999999998 5789999974
No 376
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.0001 Score=78.19 Aligned_cols=125 Identities=18% Similarity=0.161 Sum_probs=84.6
Q ss_pred CCCCHHHHHHHHH--cCCC----------CC--------ccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchh
Q psy3029 115 LGVGKTSMVVRYI--GKMF----------SH--------HISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174 (617)
Q Consensus 115 ~nVGKSSLinrl~--~~~~----------~~--------~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~ 174 (617)
|-+|||||-.+|+ ++-. .. ......|+.+.+-.+.++...+.+++.||||+++|..-+-.
T Consensus 21 PDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFSEDTYR 100 (528)
T COG4108 21 PDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSEDTYR 100 (528)
T ss_pred CCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccccchhHHH
Confidence 9999999999985 1111 00 11234566667777788888899999999999999887777
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeE
Q psy3029 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTY 245 (617)
Q Consensus 175 ~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~ 245 (617)
-+.-+|.+|.|+|+...---+. .+.+.-. .-.++||+-.+||.|-.... +.+...++-+.+++..
T Consensus 101 tLtAvDsAvMVIDaAKGiE~qT-~KLfeVc---rlR~iPI~TFiNKlDR~~rd--P~ELLdEiE~~L~i~~ 165 (528)
T COG4108 101 TLTAVDSAVMVIDAAKGIEPQT-LKLFEVC---RLRDIPIFTFINKLDREGRD--PLELLDEIEEELGIQC 165 (528)
T ss_pred HHHhhheeeEEEecccCccHHH-HHHHHHH---hhcCCceEEEeeccccccCC--hHHHHHHHHHHhCcce
Confidence 7888999999999876422111 1222222 12568999999999975432 2344445555565543
No 377
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.78 E-value=2.2e-05 Score=74.79 Aligned_cols=54 Identities=26% Similarity=0.348 Sum_probs=48.3
Q ss_pred ceeeeeeecccccccceeccccCccc-CccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~-~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+|++++|..+||||+++++|+.+.|. ..|.||+|.+|..+.+.++++.+.|++.
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~ 59 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILR 59 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEE
Confidence 56667777799999999999999998 8899999999988899999988888875
No 378
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.77 E-value=2.2e-05 Score=78.54 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=47.9
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
||++++|..+||||+++.+|..+.|+..|.||++.+| .+.+.++++.+.|+|-
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iw 54 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMW 54 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEE
Confidence 5777888889999999999999999999999999988 5789999999999874
No 379
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.76 E-value=2.8e-05 Score=75.74 Aligned_cols=55 Identities=20% Similarity=0.061 Sum_probs=49.7
Q ss_pred cceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 330 NCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 330 ~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
.+|++++|..+||||+++.+|..+.|...|.||+|.+|..+++.+++..++|++-
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iw 60 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLW 60 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEE
Confidence 3677777777999999999999999999999999999999999999999999975
No 380
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.73 E-value=5.4e-05 Score=79.95 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcc
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQE 166 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e 166 (617)
||||||||||+|++.. ...+.+.+|.+.....+.++.. +.++||||.-
T Consensus 141 PNVGKSslIN~L~~k~-~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 141 PNVGKSTLINRLLGKK-VAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred CCCcHHHHHHHHhccc-ceeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 9999999999999887 4677788898877777766654 8899999973
No 381
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.73 E-value=8.3e-05 Score=77.33 Aligned_cols=48 Identities=27% Similarity=0.387 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcc
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQE 166 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e 166 (617)
||||||||+|+|++.+. ....+.+|.+.....+..+. .+.++||||..
T Consensus 130 pnvGKSsliN~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 130 PNVGKSTLINRLAGKKI-AKTGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CCCCHHHHHHHHhcCCc-cccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 99999999999998763 35567778777666555543 47899999973
No 382
>KOG2484|consensus
Probab=97.73 E-value=6.4e-05 Score=78.92 Aligned_cols=83 Identities=19% Similarity=0.108 Sum_probs=52.4
Q ss_pred ccccccchhhhccCCEEEEEEeCCChhhH--HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC
Q psy3029 166 ERFRSMAPMYYRNANAALLVFDITQYHSF--AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG 243 (617)
Q Consensus 166 e~~~~~~~~~~~~ad~iIlV~Dis~~~S~--~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~ 243 (617)
..|....+..++.+|+||.|.|++||.+- ..+++|+... ..+...|+|+||+||...+. .+++..+.+..+-
T Consensus 134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~----~gnKkLILVLNK~DLVPrEv--~e~Wl~YLr~~~p 207 (435)
T KOG2484|consen 134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA----HGNKKLILVLNKIDLVPREV--VEKWLVYLRREGP 207 (435)
T ss_pred HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc----cCCceEEEEeehhccCCHHH--HHHHHHHHHhhCC
Confidence 34555556667789999999999999863 3455554332 22357899999999965332 2344455555555
Q ss_pred eEEEEcCCCCC
Q psy3029 244 TYYETSALQDQ 254 (617)
Q Consensus 244 ~~~evSAktg~ 254 (617)
.+.+..+....
T Consensus 208 tv~fkast~~~ 218 (435)
T KOG2484|consen 208 TVAFKASTQMQ 218 (435)
T ss_pred cceeecccccc
Confidence 55555444433
No 383
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.72 E-value=3.2e-05 Score=74.20 Aligned_cols=53 Identities=21% Similarity=0.226 Sum_probs=45.9
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+|++++|..+||||+++.+|..+.|...|.||+|.+| .+.+.++++.++|+|-
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~ 54 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLF 54 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEE
Confidence 3566667779999999999999999999999999888 5678899999998875
No 384
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.71 E-value=3.2e-05 Score=75.28 Aligned_cols=53 Identities=25% Similarity=0.246 Sum_probs=46.6
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+|++++|.++||||+++.+|..+.|...|.||+|.+| .+.+.++++.+.|+|-
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~ 56 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLW 56 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEE
Confidence 5677777779999999999999999999999999877 5678899999999874
No 385
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.70 E-value=3.9e-05 Score=71.90 Aligned_cols=54 Identities=28% Similarity=0.373 Sum_probs=49.7
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeec
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRT 385 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~ 385 (617)
|++++|..++|||+++.+|..+.|...+.||+|.++..+.+.++++.+.|+|--
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D 54 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWD 54 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccc
Confidence 566777779999999999999999999999999999999999999999999865
No 386
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.70 E-value=8.5e-05 Score=76.84 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCc
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQ 165 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~ 165 (617)
||||||||+|+|.+... ....+.+|.+.....+.+.. .+.++||||.
T Consensus 127 ~nvGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 127 PNVGKSTLINRLAGKKV-AKVGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCCHHHHHHHHhCCCc-cccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 99999999999998763 34456677776666555543 4789999997
No 387
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00015 Score=73.20 Aligned_cols=141 Identities=18% Similarity=0.105 Sum_probs=84.8
Q ss_pred ccccCCCCCCCCHHHHHHHHHc---CC-------CC----CccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccc
Q psy3029 107 CFEANWFWLGVGKTSMVVRYIG---KM-------FS----HHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMA 172 (617)
Q Consensus 107 ~~~~i~G~~nVGKSSLinrl~~---~~-------~~----~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~ 172 (617)
..+..+|--.=|||||..+++. .. |. +....-.|+++.+..+.+.-.....-.+|+||+.+|-...
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvKNM 92 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNM 92 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHHHH
Confidence 3333344499999999988752 11 10 1111234555555555555455567889999998876443
Q ss_pred hhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCC-eEEEEEECCCCCCccccC---HHHHHHHHHhcCC-----
Q psy3029 173 PMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPL-VLCVVGNKTDLESSREVN---REEAFHYSKSIGG----- 243 (617)
Q Consensus 173 ~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~i-PvIlVgNK~DL~~~~~v~---~~e~~~~~~~~g~----- 243 (617)
-.-..+.|+.|||+++++..--+..+.. - +.+. -.+ -++++.||+|+.++++.. ..+.+++..++++
T Consensus 93 ItgAaqmDgAILVVsA~dGpmPqTrEHi-L-larq--vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~ 168 (394)
T COG0050 93 ITGAAQMDGAILVVAATDGPMPQTREHI-L-LARQ--VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDT 168 (394)
T ss_pred hhhHHhcCccEEEEEcCCCCCCcchhhh-h-hhhh--cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 3344578999999999985422221211 1 1111 123 467888999998754422 2455677777776
Q ss_pred eEEEEcCC
Q psy3029 244 TYYETSAL 251 (617)
Q Consensus 244 ~~~evSAk 251 (617)
|++.-||.
T Consensus 169 Pii~gSal 176 (394)
T COG0050 169 PIIRGSAL 176 (394)
T ss_pred ceeechhh
Confidence 67777765
No 388
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.67 E-value=4.6e-05 Score=71.81 Aligned_cols=54 Identities=30% Similarity=0.310 Sum_probs=48.1
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.||+|.++..+.+.+++..++|+|-
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~ 54 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIW 54 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEE
Confidence 356677777999999999999999999999999999988999999988888865
No 389
>KOG1954|consensus
Probab=97.67 E-value=0.00034 Score=72.67 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=90.4
Q ss_pred HHHHHHHHhhhhhhccCCCccccccCCccccccccccccCCcccccccccccceEEEEEccCcccccccCCCCCCccccC
Q psy3029 32 SKEQLRRKQKEGKIQTSSLTEVSVNLPKLNYQKNNKNKKKTLIPYLEMLVSNKIKVGLLSDKFVVGLSINSRVPNCFEAN 111 (617)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i 111 (617)
+....+-.++.|+-+.++|+..--... .+. .....+.+ ..+-=|+++|.
T Consensus 18 ~~tv~~glkrlY~~kl~PLE~~Yrf~d-f~s------p~l~d~df-----d~KPmill~Gq------------------- 66 (532)
T KOG1954|consen 18 LQTVSEGLKRLYKQKLLPLEELYRFHD-FHS------PALEDPDF-----DAKPMILLVGQ------------------- 66 (532)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhhhh-ccc------ccccCccc-----ccCceEEEEec-------------------
Confidence 444556667777777777765432211 111 11111111 23335888898
Q ss_pred CCCCCCCHHHHHHHHHcCCCCCc-cCCCcceeEEEEEEEEC------CeE------------------------------
Q psy3029 112 WFWLGVGKTSMVVRYIGKMFSHH-ISPTIGASFFTAKINVG------ENK------------------------------ 154 (617)
Q Consensus 112 ~G~~nVGKSSLinrl~~~~~~~~-~~~t~g~~~~~~~i~~~------~~~------------------------------ 154 (617)
=..||||+|+.|+...|... ..|.+..++....+.-+ |..
T Consensus 67 ---yStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~csqmp~ 143 (532)
T KOG1954|consen 67 ---YSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCSQLPN 143 (532)
T ss_pred ---cccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHhcCCh
Confidence 88999999999998887532 22222233332222211 110
Q ss_pred ---EEEEEEecCCcc-----------cccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEEC
Q psy3029 155 ---VKLQVWDTAGQE-----------RFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNK 220 (617)
Q Consensus 155 ---~~l~i~Dt~G~e-----------~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK 220 (617)
-.+.|+||||.- .|....+-|...+|.||++||....+--++..+.+..++ ...-.+-||.||
T Consensus 144 ~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~EdkiRVVLNK 220 (532)
T KOG1954|consen 144 QVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---GHEDKIRVVLNK 220 (532)
T ss_pred hhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---CCcceeEEEecc
Confidence 157899999962 244556677889999999999755432233333334433 333357789999
Q ss_pred CCCCC
Q psy3029 221 TDLES 225 (617)
Q Consensus 221 ~DL~~ 225 (617)
+|..+
T Consensus 221 ADqVd 225 (532)
T KOG1954|consen 221 ADQVD 225 (532)
T ss_pred ccccC
Confidence 99754
No 390
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.66 E-value=5e-05 Score=71.76 Aligned_cols=54 Identities=31% Similarity=0.345 Sum_probs=48.3
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+|++++|..++|||++++++..+.|...+.+|+|.+|..+.+.++++.++|+|-
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~ 56 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIW 56 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEE
Confidence 466677777999999999999999999999999999998999999999988874
No 391
>KOG4273|consensus
Probab=97.64 E-value=0.0003 Score=69.38 Aligned_cols=151 Identities=19% Similarity=0.250 Sum_probs=92.0
Q ss_pred CCCCC--CHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECC--eEEEEEEEecCCcccccccchhhhccCCEEEEEEeC
Q psy3029 113 FWLGV--GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE--NKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDI 188 (617)
Q Consensus 113 G~~nV--GKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~--~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Di 188 (617)
|.+|| ||-+|+.||....|.......-...++.+++.-.. ..+.+.|.-.+ +++..-.........++++|||+
T Consensus 11 g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic--de~~lpn~~~a~pl~a~vmvfdl 88 (418)
T KOG4273|consen 11 GCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC--DEKFLPNAEIAEPLQAFVMVFDL 88 (418)
T ss_pred cccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc--chhccCCcccccceeeEEEEEec
Confidence 44899 99999999998887655555444555555543211 12233332221 22221122223356789999999
Q ss_pred CChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcc-----------------------------------------
Q psy3029 189 TQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSR----------------------------------------- 227 (617)
Q Consensus 189 s~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~----------------------------------------- 227 (617)
+....+..+..|+....-. .-. -++.+|||.|.....
T Consensus 89 se~s~l~alqdwl~htdin-sfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssllgse 166 (418)
T KOG4273|consen 89 SEKSGLDALQDWLPHTDIN-SFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSLLGSE 166 (418)
T ss_pred cchhhhHHHHhhccccccc-cch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccccccccc
Confidence 9999999999998853221 111 245678999863210
Q ss_pred ---ccCHHHHHHHHHhcCCeEEEEcCCC------------CCCHHHHHHHHHHHH
Q psy3029 228 ---EVNREEAFHYSKSIGGTYYETSALQ------------DQGIEDVFLNVSKGL 267 (617)
Q Consensus 228 ---~v~~~e~~~~~~~~g~~~~evSAkt------------g~gI~eLf~~I~~~l 267 (617)
-.....+.+|+.++|+.|++.+|.+ ..||+.+|..|-..+
T Consensus 167 dasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahm 221 (418)
T KOG4273|consen 167 DASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM 221 (418)
T ss_pred cchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence 0112345688888899999998843 246777776665433
No 392
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.64 E-value=7.9e-05 Score=72.43 Aligned_cols=54 Identities=24% Similarity=0.232 Sum_probs=37.2
Q ss_pred ccCCCCCCCCHHHHHHHHHcCCC-------CCccCCCcceeEEEEEEEECCeEEEEEEEecCCc
Q psy3029 109 EANWFWLGVGKTSMVVRYIGKMF-------SHHISPTIGASFFTAKINVGENKVKLQVWDTAGQ 165 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~~~~-------~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~ 165 (617)
++++|.+|||||||+|+|++... .....+.+|.+.....+.+.. .+.|+||||.
T Consensus 130 ~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 130 VYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 33444499999999999997542 123445567776666665543 4789999994
No 393
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.63 E-value=9.1e-05 Score=74.48 Aligned_cols=102 Identities=20% Similarity=0.179 Sum_probs=57.5
Q ss_pred EEEEEEecCC--cccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHH
Q psy3029 155 VKLQVWDTAG--QERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNRE 232 (617)
Q Consensus 155 ~~l~i~Dt~G--~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~ 232 (617)
+.+.|+.|.| |.+. ....-+|.+++|.-..-.+..+.++. .+.+. .=|+|+||+|+...+. ...
T Consensus 122 ~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~Ka---GimEi-----aDi~vVNKaD~~gA~~-~~~ 187 (266)
T PF03308_consen 122 FDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKA---GIMEI-----ADIFVVNKADRPGADR-TVR 187 (266)
T ss_dssp -SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-T---THHHH------SEEEEE--SHHHHHH-HHH
T ss_pred CCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhh---hhhhh-----ccEEEEeCCChHHHHH-HHH
Confidence 4566777755 3221 12445899999998766555544432 22221 2278999999643221 112
Q ss_pred HHHHHHH---h----cCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 233 EAFHYSK---S----IGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 233 e~~~~~~---~----~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
+...... . +..+++.+||.++.||++|++.|.+.....
T Consensus 188 ~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 188 DLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp HHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 2222221 1 224899999999999999999998755443
No 394
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.62 E-value=5.2e-05 Score=74.32 Aligned_cols=53 Identities=40% Similarity=0.476 Sum_probs=46.5
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEEC-CEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG-ENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d-~~~v~LqI~ 384 (617)
|++++|..++|||+++++|+.+.|...+.||+|.+|..+.+.++ ++.+.|+|-
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~ 55 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLW 55 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEE
Confidence 55666666999999999999999999999999999988999998 788888764
No 395
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.62 E-value=5.8e-05 Score=70.70 Aligned_cols=53 Identities=26% Similarity=0.375 Sum_probs=46.3
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++++|.+++|||+++++++.+.|...+.||+|.+|..+.+.++++.+.|+|-
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~ 54 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFF 54 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEE
Confidence 34455555999999999999999999999999999999999999998888875
No 396
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.61 E-value=6e-05 Score=71.34 Aligned_cols=54 Identities=28% Similarity=0.338 Sum_probs=47.4
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||++++++..+.|...|.||+|.+|..+.+.+++..++|++-
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~ 57 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIW 57 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEE
Confidence 456666666999999999999999999999999999998999999988888764
No 397
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.61 E-value=0.0016 Score=60.86 Aligned_cols=146 Identities=18% Similarity=0.281 Sum_probs=82.3
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+|.|. ||||||||+.++...= ...-..--| +.+..+.-++..+-|.++|+
T Consensus 4 ~~mki~ITG~----------------------PGvGKtTl~~ki~e~L-~~~g~kvgG--f~t~EVR~gGkR~GF~Ivdl 58 (179)
T COG1618 4 MAMKIFITGR----------------------PGVGKTTLVLKIAEKL-REKGYKVGG--FITPEVREGGKRIGFKIVDL 58 (179)
T ss_pred cceEEEEeCC----------------------CCccHHHHHHHHHHHH-HhcCceeee--EEeeeeecCCeEeeeEEEEc
Confidence 4578999999 9999999999987421 111011122 45666777778888889888
Q ss_pred C-Ccc--------------cc-------c----ccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEE
Q psy3029 163 A-GQE--------------RF-------R----SMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCV 216 (617)
Q Consensus 163 ~-G~e--------------~~-------~----~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIl 216 (617)
. |.+ +| . ..++.+++.+|++|+ |=--+--|. ..++...+.+......|+|.
T Consensus 59 ~tg~~~~la~~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIII--DEIGpMElk-s~~f~~~ve~vl~~~kplia 135 (179)
T COG1618 59 ATGEEGILARVGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIII--DEIGPMELK-SKKFREAVEEVLKSGKPLIA 135 (179)
T ss_pred cCCceEEEEEcCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhc-cHHHHHHHHHHhcCCCcEEE
Confidence 6 321 11 1 123344556776654 522221111 12344445554445568888
Q ss_pred EEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 217 VGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 217 VgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
+..+.+-.. ..+-++..+.-++. .+-+|-+.++..|+..+
T Consensus 136 tlHrrsr~P--------~v~~ik~~~~v~v~---lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 136 TLHRRSRHP--------LVQRIKKLGGVYVF---LTPENRNRILNEILSVL 175 (179)
T ss_pred EEecccCCh--------HHHHhhhcCCEEEE---EccchhhHHHHHHHHHh
Confidence 888776311 12233344443433 56666668888877665
No 398
>KOG1143|consensus
Probab=97.58 E-value=0.00032 Score=72.89 Aligned_cols=153 Identities=12% Similarity=0.108 Sum_probs=89.2
Q ss_pred ccccCCCCCCCCHHHHHHHHHcCCCC-----------------------CccCCCcceeEEEEEEEEC----------Ce
Q psy3029 107 CFEANWFWLGVGKTSMVVRYIGKMFS-----------------------HHISPTIGASFFTAKINVG----------EN 153 (617)
Q Consensus 107 ~~~~i~G~~nVGKSSLinrl~~~~~~-----------------------~~~~~t~g~~~~~~~i~~~----------~~ 153 (617)
.|+|++|..-+|||||+--|..+... .....++|.+-..+.+++. ..
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 44444444999999999877654321 1122344444333333321 12
Q ss_pred EEEEEEEecCCcccccccchhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccc---
Q psy3029 154 KVKLQVWDTAGQERFRSMAPMYYR--NANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSRE--- 228 (617)
Q Consensus 154 ~~~l~i~Dt~G~e~~~~~~~~~~~--~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~--- 228 (617)
.-.+.|+|.+|+.+|....-..+. --+..++|+++...-.... .+.+..+.. -++|++++.+|+|+.+...
T Consensus 248 SKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~~~ 323 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA---LNIPFFVLVTKMDLVDRQGLKK 323 (591)
T ss_pred cceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH---hCCCeEEEEEeeccccchhHHH
Confidence 235789999999988765444333 3577888888766543221 222333333 3489999999999965411
Q ss_pred ---------------------cCHHHHHHHHHh----cCCeEEEEcCCCCCCHHHHHHHH
Q psy3029 229 ---------------------VNREEAFHYSKS----IGGTYYETSALQDQGIEDVFLNV 263 (617)
Q Consensus 229 ---------------------v~~~e~~~~~~~----~g~~~~evSAktg~gI~eLf~~I 263 (617)
-+.+++...+.+ .-.|+|.+|+.+|+|++-+...|
T Consensus 324 tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 324 TVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 111222222222 12389999999999987665443
No 399
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.57 E-value=0.00048 Score=72.00 Aligned_cols=104 Identities=19% Similarity=0.149 Sum_probs=64.5
Q ss_pred EEEEEecCCcccccccc--hhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccC--H
Q psy3029 156 KLQVWDTAGQERFRSMA--PMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVN--R 231 (617)
Q Consensus 156 ~l~i~Dt~G~e~~~~~~--~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~--~ 231 (617)
-+.|+||.|+|.|-... -..-.+.|-.++++.+++..+-.. .+.+-.+.. ..+|+|+|.||+|+..+..+. .
T Consensus 202 lVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~a---~~lPviVvvTK~D~~~ddr~~~v~ 277 (527)
T COG5258 202 LVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIALA---MELPVIVVVTKIDMVPDDRFQGVV 277 (527)
T ss_pred EEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhhh---hcCCEEEEEEecccCcHHHHHHHH
Confidence 57899999999886422 233347999999999988654221 122222211 347999999999996542211 1
Q ss_pred HHHHHHHH----------------------hcC---CeEEEEcCCCCCCHHHHHHHH
Q psy3029 232 EEAFHYSK----------------------SIG---GTYYETSALQDQGIEDVFLNV 263 (617)
Q Consensus 232 ~e~~~~~~----------------------~~g---~~~~evSAktg~gI~eLf~~I 263 (617)
+++..+.+ +.+ .|+|.+|+.+|+|++-|.+.+
T Consensus 278 ~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 278 EEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred HHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 11111111 111 389999999999986555443
No 400
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.57 E-value=6.7e-05 Score=73.90 Aligned_cols=53 Identities=23% Similarity=0.031 Sum_probs=46.4
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEEC-----CEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG-----ENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d-----~~~v~LqI~ 384 (617)
|++++|+++|||||++++|+.+.|...+.||||.+|..+.+.++ ++.+.|+|-
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~Iw 59 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELW 59 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEE
Confidence 56777788999999999999999999999999999988888885 577888764
No 401
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.56 E-value=8e-05 Score=72.04 Aligned_cols=53 Identities=28% Similarity=0.359 Sum_probs=47.0
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++++|..+||||++++++..+.|...+.||+|.++..+.+.++++.+.|++-
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 54 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIW 54 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEE
Confidence 56666777999999999999999998899999999998999999988888765
No 402
>KOG1424|consensus
Probab=97.54 E-value=0.00021 Score=77.39 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=52.7
Q ss_pred hhccCCEEEEEEeCCChhhHH--HHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCC
Q psy3029 175 YYRNANAALLVFDITQYHSFA--AIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQ 252 (617)
Q Consensus 175 ~~~~ad~iIlV~Dis~~~S~~--~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAkt 252 (617)
.++.+|+||.++|+++|--|. ++.+|..++.. ....+|++||+||....+ ......++...+++++..||..
T Consensus 171 VlErSDivvqIVDARnPllfr~~dLe~Yvke~d~----~K~~~LLvNKaDLl~~~q--r~aWa~YF~~~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 171 VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDP----SKANVLLVNKADLLPPEQ--RVAWAEYFRQNNIPVVFFSALA 244 (562)
T ss_pred HHhhcceEEEEeecCCccccCChhHHHHHhcccc----ccceEEEEehhhcCCHHH--HHHHHHHHHhcCceEEEEeccc
Confidence 466899999999999987553 45555555432 235789999999976544 3345566777789999999986
No 403
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.54 E-value=9.1e-05 Score=69.92 Aligned_cols=54 Identities=28% Similarity=0.319 Sum_probs=46.6
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+|++++|..++|||++++++..+.|...|.||+|.+|..+++..+++.+.+++-
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~ 55 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIW 55 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEE
Confidence 456666666999999999999999999999999999988899889888877754
No 404
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.54 E-value=8.5e-05 Score=74.09 Aligned_cols=54 Identities=22% Similarity=0.175 Sum_probs=46.0
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+|++++|..+||||+++.+++.+.|...|.||+|.++..+.+..++..++|+|-
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~ 67 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCW 67 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEE
Confidence 444555555999999999999999999999999999988888888888888864
No 405
>PLN00023 GTP-binding protein; Provisional
Probab=97.52 E-value=8.8e-05 Score=77.52 Aligned_cols=56 Identities=21% Similarity=0.100 Sum_probs=46.1
Q ss_pred CcceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECC-------------EEEEEEee
Q psy3029 329 PNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE-------------NKVKLQLR 384 (617)
Q Consensus 329 ~~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~-------------~~v~LqI~ 384 (617)
..+|++++|..+|||||++.+|+.+.|...+.||||.+|..+.+.+++ +.++|+|-
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIW 88 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELW 88 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEE
Confidence 335556666669999999999999999999999999999889898863 56777764
No 406
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.52 E-value=8.8e-05 Score=70.90 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=45.8
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..+||||+++.+|..+.|...+.||++..| .+.+.++++.+.|+|-
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~ 55 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDIL 55 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEE
Confidence 4666677779999999999999999999999999777 6778999999988874
No 407
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.50 E-value=0.00011 Score=69.18 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=46.9
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+|++++|..++|||+++++++.+.|...+.||+|.+|..+.+.+++..++++|-
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 56 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 56 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEE
Confidence 456666666999999999999999999999999999999999999988877754
No 408
>KOG0448|consensus
Probab=97.50 E-value=0.001 Score=74.36 Aligned_cols=92 Identities=15% Similarity=0.259 Sum_probs=55.9
Q ss_pred EEEEEecCCcc---cccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHH
Q psy3029 156 KLQVWDTAGQE---RFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNRE 232 (617)
Q Consensus 156 ~l~i~Dt~G~e---~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~ 232 (617)
.+.++|.||.. .....+..+..++|++|||..+.+..+... .+++....+. +..++|+.||+|....++...+
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~---KpniFIlnnkwDasase~ec~e 282 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE---KPNIFILNNKWDASASEPECKE 282 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc---CCcEEEEechhhhhcccHHHHH
Confidence 46678888864 334456677889999999998766543332 3455554442 3467888999998755433333
Q ss_pred HHHHHHHhcC--------CeEEEEcCC
Q psy3029 233 EAFHYSKSIG--------GTYYETSAL 251 (617)
Q Consensus 233 e~~~~~~~~g--------~~~~evSAk 251 (617)
.+..-..++. -.+|.|||+
T Consensus 283 ~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 283 DVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred HHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 3322222222 257888854
No 409
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.48 E-value=0.0001 Score=73.11 Aligned_cols=53 Identities=28% Similarity=0.313 Sum_probs=45.6
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECC-EEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE-NKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~-~~v~LqI~ 384 (617)
|++++|..++|||+++++|..+.|...|.||+|.+|..+.+.+++ ..++|+|-
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~ 55 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVW 55 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEE
Confidence 556666669999999999999999999999999999999999975 56777765
No 410
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.48 E-value=0.00011 Score=71.22 Aligned_cols=53 Identities=36% Similarity=0.400 Sum_probs=45.5
Q ss_pred eeeeeeecccccccceeccccCcccC-ccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSH-HISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~-~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
|++++|.++||||+++++++.+.|.. .|.+|+|.+|..+.+.++++.++|+|-
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~ 55 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIW 55 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEE
Confidence 44555555999999999999999975 689999999988999999999998874
No 411
>PLN03110 Rab GTPase; Provisional
Probab=97.48 E-value=0.00012 Score=72.82 Aligned_cols=54 Identities=28% Similarity=0.300 Sum_probs=46.9
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+|++++|..++|||+++++++.+.|...+.||+|.+|..+.+.+++..+.++|-
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~ 66 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIW 66 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEE
Confidence 345555555999999999999999988889999999999999999998888874
No 412
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.48 E-value=8.9e-05 Score=72.77 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=44.4
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEe
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI 383 (617)
+++++|..+||||+++++|+.+.|...|.||++.++..+.+.++++.+.|+|
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i 53 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHI 53 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEE
Confidence 3445555599999999999999999999999999887888899998888775
No 413
>KOG0081|consensus
Probab=97.48 E-value=5.4e-05 Score=69.52 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=36.4
Q ss_pred eeeeeecccccccceeccccCcccCccCCccceeeEEEEEEE
Q psy3029 333 EANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINV 374 (617)
Q Consensus 333 ~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~ 374 (617)
...+|+++|||+|++.+|.++.|...+++|+|+||..|.+..
T Consensus 12 fLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY 53 (219)
T KOG0081|consen 12 FLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVY 53 (219)
T ss_pred HHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEE
Confidence 344567799999999999999999999999999998776654
No 414
>KOG0088|consensus
Probab=97.47 E-value=2.1e-05 Score=72.16 Aligned_cols=58 Identities=29% Similarity=0.303 Sum_probs=54.5
Q ss_pred CCCcceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 327 RVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 327 ~~~~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+.-+||++++|..+||||+++.||+++.|+..+.+|+-+.|.+|.+.++|+.+.|.|-
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IW 67 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIW 67 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeee
Confidence 4567999999999999999999999999999999999999999999999999999985
No 415
>KOG0395|consensus
Probab=97.46 E-value=0.00016 Score=70.83 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=45.7
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeec
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRT 385 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~ 385 (617)
+++++|..+||||+++.+|+.+.|...|.|||+ |+..+.+.++++.+.|+|..
T Consensus 5 kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilD 57 (196)
T KOG0395|consen 5 KVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILD 57 (196)
T ss_pred EEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEc
Confidence 344444559999999999999999999999998 55599999999999999765
No 416
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.46 E-value=0.00084 Score=67.25 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=49.0
Q ss_pred cCCCCCCCCHHHHHHHHHcC--CCCC---ccCCCcceeEEEEEEEECCeEEEEEEEecCCccccc------ccchhhhcc
Q psy3029 110 ANWFWLGVGKTSMVVRYIGK--MFSH---HISPTIGASFFTAKINVGENKVKLQVWDTAGQERFR------SMAPMYYRN 178 (617)
Q Consensus 110 ~i~G~~nVGKSSLinrl~~~--~~~~---~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~------~~~~~~~~~ 178 (617)
+|+|.+++|||+|+|+|++. .|.. ....|.|+-.....+.. +....+.++||+|..... ......+.-
T Consensus 11 sv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~ 89 (224)
T cd01851 11 SVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARLFALAT 89 (224)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHHHHHHH
Confidence 34444999999999999988 5532 22334443322222211 235679999999974322 122233334
Q ss_pred --CCEEEEEEeCCChh
Q psy3029 179 --ANAALLVFDITQYH 192 (617)
Q Consensus 179 --ad~iIlV~Dis~~~ 192 (617)
++++|+..+.....
T Consensus 90 llss~~i~n~~~~~~~ 105 (224)
T cd01851 90 LLSSVLIYNSWETILG 105 (224)
T ss_pred HHhCEEEEeccCcccH
Confidence 88888888765543
No 417
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.46 E-value=0.00011 Score=68.78 Aligned_cols=53 Identities=23% Similarity=0.347 Sum_probs=44.0
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.||++. +..+.+.+++..+.|+|-
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~ 54 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQIEVDGQQCMLEIL 54 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhh-hEEEEEEECCEEEEEEEE
Confidence 45556666699999999999999999999999985 447889999988888764
No 418
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.44 E-value=0.00012 Score=72.49 Aligned_cols=54 Identities=30% Similarity=0.372 Sum_probs=46.5
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEE-CCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINV-GENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~-d~~~v~LqI~ 384 (617)
+|++++|..+||||+++++++.+.|...+.||+|.+|..+.+.+ ++..++|+|-
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~ 57 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLW 57 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEE
Confidence 56667777799999999999999999989999999999999988 4677887763
No 419
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.42 E-value=0.00036 Score=65.54 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCc
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQ 165 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~ 165 (617)
+|||||||+|.+++... .......+.+.....+.+. ..+.++||||.
T Consensus 109 ~~~GKstlin~l~~~~~-~~~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 109 PNVGKSSVINALLNKLK-LKVGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred CCCCHHHHHHHHHcccc-ccccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 99999999999998652 2233334444444444443 35889999984
No 420
>KOG1424|consensus
Probab=97.41 E-value=0.0001 Score=79.70 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=40.8
Q ss_pred CCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcc
Q psy3029 112 WFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQE 166 (617)
Q Consensus 112 ~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e 166 (617)
+|+|||||||+||.|.+.+ ...+..|+|-+..-.++.+... +.+.|+||.-
T Consensus 320 VGYPNVGKSSTINaLvG~K-kVsVS~TPGkTKHFQTi~ls~~---v~LCDCPGLV 370 (562)
T KOG1424|consen 320 VGYPNVGKSSTINALVGRK-KVSVSSTPGKTKHFQTIFLSPS---VCLCDCPGLV 370 (562)
T ss_pred ecCCCCchhHHHHHHhcCc-eeeeecCCCCcceeEEEEcCCC---ceecCCCCcc
Confidence 4559999999999999988 5677899998876666665543 6788999963
No 421
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.41 E-value=0.00018 Score=68.09 Aligned_cols=53 Identities=30% Similarity=0.386 Sum_probs=45.5
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++++|..++|||+++++++.+.|...+.+|+|.+|..+.+.++++.+.|+|-
T Consensus 7 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 59 (170)
T cd04116 7 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIW 59 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEE
Confidence 34444444999999999999999998889999999999999999999988864
No 422
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.40 E-value=0.00018 Score=67.64 Aligned_cols=53 Identities=26% Similarity=0.327 Sum_probs=45.6
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++++|..++|||++++++..+.|...+.||+|.+|..+.+.++++.+.+++-
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~ 57 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIW 57 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEE
Confidence 44555555999999999999999998899999999999999999988887764
No 423
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.39 E-value=0.00018 Score=68.27 Aligned_cols=54 Identities=24% Similarity=0.302 Sum_probs=47.2
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
.+++++|.+++|||+++.+++.+.|...+.+|++.+|..+.+.++++.+.++|-
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 56 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLW 56 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEE
Confidence 456666666999999999999999999899999999999999999988888764
No 424
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.39 E-value=0.00017 Score=67.41 Aligned_cols=53 Identities=28% Similarity=0.389 Sum_probs=45.3
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEEC--CEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG--ENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d--~~~v~LqI~ 384 (617)
|++++|.+++|||++++++..+.|...+.||++.+|..+.+.++ +..++|+|-
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~ 56 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLW 56 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEe
Confidence 45566666999999999999999999999999999988888888 777777754
No 425
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.38 E-value=0.00017 Score=69.02 Aligned_cols=53 Identities=25% Similarity=0.246 Sum_probs=45.0
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
.+++++|..+||||+++.+|+.+.|...|.||++..| .+.+.++++.++|+|-
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~ 54 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLW 54 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEE
Confidence 4566677779999999999999999999999997655 6788899999998864
No 426
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.38 E-value=0.00017 Score=70.55 Aligned_cols=54 Identities=30% Similarity=0.374 Sum_probs=45.6
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
.+++++|..++|||+++++|....|...+.||+|.+|..+.+.+++..+.|+|-
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~ 60 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIW 60 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEE
Confidence 345555555999999999999999998999999999988999999988777753
No 427
>PTZ00369 Ras-like protein; Provisional
Probab=97.37 E-value=0.00017 Score=69.98 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=46.5
Q ss_pred cceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 330 NCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 330 ~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
.+|++++|..++|||++++++..+.|...+.||++..| .+.+.+++..+.|+|-
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~ 58 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDIL 58 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEE
Confidence 35666666669999999999999999999999999888 7889999999888873
No 428
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.37 E-value=0.00017 Score=67.05 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=43.5
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEe
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI 383 (617)
+++++|..++|||+++++++.+.|...+.||++..| .+.+.+++..+.++|
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i 53 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDI 53 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEE
Confidence 455556669999999999999999999999998777 778899998888876
No 429
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.37 E-value=0.00015 Score=73.81 Aligned_cols=52 Identities=25% Similarity=0.337 Sum_probs=45.4
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++++|..+||||+++++|+.+.|...|.||++ ++..+.+.++++.+.|+|-
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~ 53 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDIL 53 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEE
Confidence 566667779999999999999999999999997 7778999999998888874
No 430
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.36 E-value=0.0002 Score=67.41 Aligned_cols=55 Identities=29% Similarity=0.285 Sum_probs=47.5
Q ss_pred cceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 330 NCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 330 ~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
.++++++|..++|||++++++..+.|...+.+|+|.++..+.+.+++..+.|+|-
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~ 57 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIW 57 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEE
Confidence 3566777777999999999999999999999999999988999999987777754
No 431
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.36 E-value=0.00018 Score=67.58 Aligned_cols=53 Identities=23% Similarity=0.367 Sum_probs=45.0
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+|++++|..++|||+++++++.+.|...+.||++..| .+.+.+++..+.|+|-
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~ 54 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEIL 54 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEE
Confidence 3555666669999999999999999999999999877 6889999998888865
No 432
>KOG0460|consensus
Probab=97.34 E-value=0.0025 Score=65.89 Aligned_cols=148 Identities=17% Similarity=0.080 Sum_probs=90.6
Q ss_pred CCCCCCccccCCCCCCCCHHHHHHHHHc-------CCC---C----CccCCCcceeEEEEEEEECCeEEEEEEEecCCcc
Q psy3029 101 NSRVPNCFEANWFWLGVGKTSMVVRYIG-------KMF---S----HHISPTIGASFFTAKINVGENKVKLQVWDTAGQE 166 (617)
Q Consensus 101 ~~~~~~~~~~i~G~~nVGKSSLinrl~~-------~~~---~----~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e 166 (617)
.+..|+|.+.-+|-.-=|||||-.++.. .++ . +......|+++....+.+.-..-..--.|+||+.
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA 128 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH
Confidence 3567888888888899999999888752 111 1 1112234555555555444444455678999998
Q ss_pred cccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcccc---CHHHHHHHHHhcCC
Q psy3029 167 RFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREV---NREEAFHYSKSIGG 243 (617)
Q Consensus 167 ~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v---~~~e~~~~~~~~g~ 243 (617)
+|-...-.-....|+.|+|+.++|..--+. .+.+-..++..- ..+++.+||.|+.++.+. -.-+++++..++|+
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~MPQT-rEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf 205 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGPMPQT-REHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF 205 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCCCcch-HHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 775433333447899999999999542221 222222233222 257888999999854332 22356677777775
Q ss_pred -----eEEEEcCC
Q psy3029 244 -----TYYETSAL 251 (617)
Q Consensus 244 -----~~~evSAk 251 (617)
|++.=||.
T Consensus 206 ~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 206 DGDNTPVIRGSAL 218 (449)
T ss_pred CCCCCCeeecchh
Confidence 77765554
No 433
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.33 E-value=0.0002 Score=67.19 Aligned_cols=53 Identities=25% Similarity=0.382 Sum_probs=44.3
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.||++ ++..+.+.+++..+.|+|-
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~ 54 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEIL 54 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEE
Confidence 4556666669999999999999999999999997 5657899999988888764
No 434
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.32 E-value=0.00024 Score=67.39 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=46.8
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+|++++|..++|||+++++++.+.|...+.||++.++..+.+..+++.+.|++.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~ 54 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVW 54 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEE
Confidence 356677777999999999999999999999999999988888888888888764
No 435
>PLN03108 Rab family protein; Provisional
Probab=97.32 E-value=0.00023 Score=70.45 Aligned_cols=53 Identities=26% Similarity=0.316 Sum_probs=47.4
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEe
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI 383 (617)
+|++++|..++|||+++++++...|...+.||+|.+|..+.+.++++.+.|++
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l 59 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQI 59 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEE
Confidence 56677777799999999999999999889999999999999999998888776
No 436
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.29 E-value=0.00077 Score=71.84 Aligned_cols=74 Identities=15% Similarity=0.042 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHcCCC-CC-ccC-CCcceeEEEEEEEECCe---------------EEEEEEEecCCcccc----cc-
Q psy3029 114 WLGVGKTSMVVRYIGKMF-SH-HIS-PTIGASFFTAKINVGEN---------------KVKLQVWDTAGQERF----RS- 170 (617)
Q Consensus 114 ~~nVGKSSLinrl~~~~~-~~-~~~-~t~g~~~~~~~i~~~~~---------------~~~l~i~Dt~G~e~~----~~- 170 (617)
.||||||||+|.|++... .. .|. .|+..... .+.+.+. ...+.++|+||...- ..
T Consensus 10 lPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g--~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Gl 87 (368)
T TIGR00092 10 LPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAG--VVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGL 87 (368)
T ss_pred CCCCChHHHHHHHhCCCccccCCCCCCCCCCcee--EEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhcccCc
Confidence 399999999999998764 22 222 12222222 2233221 236889999996432 12
Q ss_pred --cchhhhccCCEEEEEEeCC
Q psy3029 171 --MAPMYYRNANAALLVFDIT 189 (617)
Q Consensus 171 --~~~~~~~~ad~iIlV~Dis 189 (617)
..-..++++|++++|++..
T Consensus 88 gn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 88 GNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred chHHHHHHHhCCEEEEEEeCC
Confidence 2233467999999999975
No 437
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.29 E-value=0.00029 Score=65.88 Aligned_cols=54 Identities=31% Similarity=0.458 Sum_probs=47.3
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+|++++|..++|||+++++++.+.+...+.+|+|.+|..+.+.+++..++|+|-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~ 55 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIW 55 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEE
Confidence 456666666999999999999999988889999999999999999988888854
No 438
>KOG1191|consensus
Probab=97.28 E-value=0.00034 Score=75.46 Aligned_cols=60 Identities=20% Similarity=0.203 Sum_probs=53.1
Q ss_pred hhheeeeccCCCCCCCcceeeeeeecccccccceeccccCcc-cCccCCccceeeEEEEEEECCEEEEEEeecCCCc
Q psy3029 314 ETAKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMF-SHHISPTIGASFFTAKINVGENKVKLQLRTGLKV 389 (617)
Q Consensus 314 ~~~v~ivG~~~~s~~~~~~~~~~g~~~vGKssi~~~~~~~~f-~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~~ 389 (617)
++.++|+|+| |||||+++|.+..+.- .....|.+..|.....++++|..|.|--++|+..
T Consensus 268 gl~iaIvGrP----------------NvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 268 GLQIAIVGRP----------------NVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE 328 (531)
T ss_pred CCeEEEEcCC----------------CCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc
Confidence 4779999999 9999999999997653 4566888889999999999999999999999987
No 439
>cd01725 LSm2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm2 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=97.27 E-value=0.0022 Score=53.43 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=57.1
Q ss_pred HhHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEecc
Q psy3029 452 FMQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAKN 526 (617)
Q Consensus 452 ~~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~~ 526 (617)
++.++.+++|++|+|.+|||..|+|++.++.+-+.++|+=|...++... .. -.-.+.+.|.+..|.-|..+|
T Consensus 2 ~~~fL~~l~g~~V~VeLKng~~~~G~L~~vD~~MNi~L~n~~~~~~~~~--~~-~~~~~~v~IRG~~I~~I~lp~ 73 (81)
T cd01725 2 FFSFFKTLVGKEVTVELKNDLSIRGTLHSVDQYLNIKLTNISVTDPEKY--PH-MLSVKNCFIRGSVVRYVQLPA 73 (81)
T ss_pred hhHHHHhCCCCEEEEEECCCcEEEEEEEEECCCcccEEEEEEEEcCCCc--cc-ccccCeEEEECCEEEEEEeCh
Confidence 3567889999999999999999999999999999999999876543221 11 112267889999999888876
No 440
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.26 E-value=0.00031 Score=65.53 Aligned_cols=53 Identities=28% Similarity=0.403 Sum_probs=45.9
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++++|.+++|||+++++++...+...+.||++.+|..+.+.+++..++|++-
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 54 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLW 54 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEE
Confidence 45555666999999999999999998899999999999999999988877754
No 441
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.26 E-value=0.00027 Score=68.52 Aligned_cols=52 Identities=21% Similarity=0.173 Sum_probs=44.4
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
|++++|..++|||+++.+|..+.|...|.||++..| .+.+.++++.+.|+|-
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~ 53 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLW 53 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEE
Confidence 455666669999999999999999999999999988 5678889988888874
No 442
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.24 E-value=0.00035 Score=65.93 Aligned_cols=52 Identities=38% Similarity=0.516 Sum_probs=44.9
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEe
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI 383 (617)
+++++|..++|||++++++....+...+.+|++.+|..+.+.+++..+.|++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 53 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQI 53 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEE
Confidence 4555666699999999999999999889999999999999999998877663
No 443
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.24 E-value=0.00031 Score=67.14 Aligned_cols=45 Identities=24% Similarity=0.274 Sum_probs=38.9
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEEC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG 375 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d 375 (617)
+|++++|.+++|||++++++..+.|...+.||+|.+|..+.+.++
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 49 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYN 49 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEc
Confidence 455666666999999999999999999999999999988877765
No 444
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.23 E-value=0.0034 Score=60.23 Aligned_cols=86 Identities=23% Similarity=0.164 Sum_probs=60.5
Q ss_pred eEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHH
Q psy3029 153 NKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNRE 232 (617)
Q Consensus 153 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~ 232 (617)
..+.+.|+||++... ......+..+|.+|+++..+ ..+...+.+++..+.+. ++|+.+|+||+|.... ..+
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 457889999996532 23445678899999999876 34667777777666553 3578899999996432 234
Q ss_pred HHHHHHHhcCCeEEE
Q psy3029 233 EAFHYSKSIGGTYYE 247 (617)
Q Consensus 233 e~~~~~~~~g~~~~e 247 (617)
+..+++++++++++.
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 566778888887653
No 445
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.22 E-value=0.00032 Score=66.62 Aligned_cols=53 Identities=23% Similarity=0.209 Sum_probs=45.5
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+|++++|..++|||++++++..+.|...|.||++..| .+.+.++++.+.|+|-
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~ 54 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALW 54 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEE
Confidence 4677777779999999999999999999999999887 4678899988888764
No 446
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.22 E-value=0.0012 Score=71.97 Aligned_cols=94 Identities=17% Similarity=0.136 Sum_probs=52.9
Q ss_pred EEEEEEEecCCcccccc-cc---hhh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcc
Q psy3029 154 KVKLQVWDTAGQERFRS-MA---PMY--YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSR 227 (617)
Q Consensus 154 ~~~l~i~Dt~G~e~~~~-~~---~~~--~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~ 227 (617)
.+.+.|+||+|...... +. ..+ ..+.+.++||+|+.-...-.. ....+.+.. -+--+|.||.|....
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~~---~~~g~IlTKlD~~ar- 254 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDSV---DVGSVIITKLDGHAK- 254 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhcc---CCcEEEEECccCCCC-
Confidence 46789999999643221 11 111 225788999999875432221 222232222 145688999997432
Q ss_pred ccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHH
Q psy3029 228 EVNREEAFHYSKSIGGTYYETSALQDQGIEDV 259 (617)
Q Consensus 228 ~v~~~e~~~~~~~~g~~~~evSAktg~gI~eL 259 (617)
.-.+..+....+.|+.+++ +|+.++++
T Consensus 255 ---gG~aLs~~~~t~~PI~fig--~Ge~v~Dl 281 (429)
T TIGR01425 255 ---GGGALSAVAATKSPIIFIG--TGEHIDDF 281 (429)
T ss_pred ---ccHHhhhHHHHCCCeEEEc--CCCChhhc
Confidence 1224455666677776665 45555554
No 447
>PF12701 LSM14: Scd6-like Sm domain; PDB: 2RM4_A 2FB7_A 2VC8_A 2VXF_A 2VXE_A.
Probab=97.22 E-value=0.0018 Score=55.54 Aligned_cols=73 Identities=16% Similarity=0.274 Sum_probs=56.6
Q ss_pred hHhhcCCEEEEEEeCCcEEEEEEeeecC-CceEEEEeeeecCCCC----CCCCCCCcccceeeeecCceeEEEecccc
Q psy3029 456 ITLHIGDKVTVYTVHGKQFEGYLKTFSK-QFELVISMTHQVDPEN----PQCIDPNTVVDMKIFKLDDIVRIEAKNVD 528 (617)
Q Consensus 456 ~~~~iG~~v~v~~~~G~~y~Gi~~~~s~-~~~~~l~~~~~~~~~~----~~~~~~~~~~~~l~~~~~d~v~~~~~~v~ 528 (617)
...+||+.|.+..|++.+|||+|++.+. +..|+|+-++.--.+. ...+..+++-+.++|.+.||-++.+-+..
T Consensus 3 ~~~~IGs~ISlisk~~iRYeG~L~~Id~~~sTItL~nVr~~GtE~R~~~~~ipp~~~v~~~I~Fr~sDIkdL~v~e~~ 80 (96)
T PF12701_consen 3 ADPYIGSKISLISKSDIRYEGILYSIDTEDSTITLKNVRSFGTEGRPTDREIPPSDEVYDYIVFRGSDIKDLKVIEPP 80 (96)
T ss_dssp CCCCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEETTETTSS-SS---C-CSSSSEEEEETTTEEEEEECE-S
T ss_pred cccccCCEEEEEECCCcEEEEEEEEEcCCCCEEEeeeeeecCcCCCCcCcccCCCCceeeEEEEEccccceEEEEcCC
Confidence 4568999999999999999999999986 6789999988763221 23344577888999999999999886643
No 448
>PRK12288 GTPase RsgA; Reviewed
Probab=97.21 E-value=0.00035 Score=74.47 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=33.7
Q ss_pred cccCCCCCCCCHHHHHHHHHcCCCCC--ccCC--Ccc--eeEEEEEEEECCeEEEEEEEecCCcccc
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGKMFSH--HISP--TIG--ASFFTAKINVGENKVKLQVWDTAGQERF 168 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~~~~~--~~~~--t~g--~~~~~~~i~~~~~~~~l~i~Dt~G~e~~ 168 (617)
..+|+|.+|||||||||+|++..... .... ..| .+.....+.+.++ ..++||||...+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 35566779999999999999764311 1111 111 1223333444332 248999998654
No 449
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.18 E-value=0.00032 Score=68.96 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=45.0
Q ss_pred eeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 336 WFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 336 ~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+|..+||||+++.+|+.+.|...|.||||.+|..+.+.++++.++|+|-
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iw 49 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVW 49 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEE
Confidence 4677999999999999999999999999999999999999999999874
No 450
>cd01733 LSm10 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm10 is an SmD1-like protein which is thought to bind U7 snRNA along with LSm11 and five other Sm subunits to form a 7-member ring structure. LSm10 and the U7 snRNP of which it is a part are thought to play an important role in histone mRNA 3' processing.
Probab=97.18 E-value=0.0032 Score=52.10 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=55.3
Q ss_pred hHhHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEe
Q psy3029 451 RFMQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEA 524 (617)
Q Consensus 451 r~~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~ 524 (617)
-|+.++.+++|..|+|.+|||..|.|.+.++..-+.+.|+-|..++..... .-.+.+.|.+..|.-|.+
T Consensus 9 tl~~~L~~l~g~~V~VeLKng~~~~G~L~~vD~~MNl~L~~~~~~~~~~~~-----~~~~~v~IRG~nI~yI~l 77 (78)
T cd01733 9 TLIILLQGLQGKVVTVELRNETTVTGRIASVDAFMNIRLAKVTIIDRNGKQ-----VQVEEIMVTGRNIRYVHI 77 (78)
T ss_pred hHHHHHHHCCCCEEEEEECCCCEEEEEEEEEcCCceeEEEEEEEEcCCCce-----eECCcEEEECCEEEEEEc
Confidence 478899999999999999999999999999999999999999877543211 123567778777776654
No 451
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.17 E-value=0.00046 Score=65.38 Aligned_cols=55 Identities=25% Similarity=0.297 Sum_probs=46.5
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeec
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRT 385 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~ 385 (617)
++++++|..++|||+++++++...+...+.+|+|.++..+.+.+++..+.++|.-
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 59 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWD 59 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEE
Confidence 4555555669999999999999999999999999999999999999877777653
No 452
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.17 E-value=0.00051 Score=68.03 Aligned_cols=55 Identities=22% Similarity=0.177 Sum_probs=47.4
Q ss_pred cceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 330 NCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 330 ~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
.+|++++|..++|||+++++++.+.|...|.||+|.++..+.+..++..+.+++-
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~ 63 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVW 63 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEE
Confidence 3555556666999999999999999999999999999998888889988888874
No 453
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0017 Score=70.65 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=74.0
Q ss_pred ccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEE
Q psy3029 107 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVF 186 (617)
Q Consensus 107 ~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~ 186 (617)
+.+|++|+||+|||||+..|+..-.........| ..+ .+.++.-++.|..++. ....++. ..+-+|++||++
T Consensus 70 fIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiT-vvsgK~RRiTflEcp~--Dl~~miD-vaKIaDLVlLlI 141 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PIT-VVSGKTRRITFLECPS--DLHQMID-VAKIADLVLLLI 141 (1077)
T ss_pred eEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceE-EeecceeEEEEEeChH--HHHHHHh-HHHhhheeEEEe
Confidence 3334445599999999998875422111111111 222 2456777899999883 2333333 234689999999
Q ss_pred eCCChhhHHH-HHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHH------HHHHh-cCCeEEEEcCCC
Q psy3029 187 DITQYHSFAA-IKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF------HYSKS-IGGTYYETSALQ 252 (617)
Q Consensus 187 Dis~~~S~~~-l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~------~~~~~-~g~~~~evSAkt 252 (617)
|..-. |+. .-++|..+..+.. ..|+-|+|+.||..... +...+. -|..- .|+.+|.+|-..
T Consensus 142 dgnfG--fEMETmEFLnil~~HGm--PrvlgV~ThlDlfk~~s-tLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 142 DGNFG--FEMETMEFLNILISHGM--PRVLGVVTHLDLFKNPS-TLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred ccccC--ceehHHHHHHHHhhcCC--CceEEEEeecccccChH-HHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 97543 322 1245555544432 24778999999964321 111111 11111 267888888653
No 454
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.15 E-value=0.00071 Score=71.28 Aligned_cols=97 Identities=20% Similarity=0.230 Sum_probs=58.6
Q ss_pred eEEEEEEEecCCcccccc----cchhhh--------ccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEEC
Q psy3029 153 NKVKLQVWDTAGQERFRS----MAPMYY--------RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNK 220 (617)
Q Consensus 153 ~~~~l~i~Dt~G~e~~~~----~~~~~~--------~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK 220 (617)
..+.+.|+||+|...... ....+. ...+..++|+|++... +.+.+ .....+... +.-+|.||
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~~~---~~giIlTK 268 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEAVG---LTGIILTK 268 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhhCC---CCEEEEEC
Confidence 346789999999743221 111111 2467889999988543 33332 122222111 34689999
Q ss_pred CCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHH
Q psy3029 221 TDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFL 261 (617)
Q Consensus 221 ~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~ 261 (617)
.|.... .-.+..++...++|+..++ +|+++++|..
T Consensus 269 lD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 269 LDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 995432 2345566777899999998 8888877743
No 455
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.15 E-value=0.00033 Score=68.02 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=43.4
Q ss_pred eeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 333 EANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 333 ~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++|..+||||+++++|+.+.|...|.||++..| .+.+.+++..+.|+|-
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~ 52 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVL 52 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEE
Confidence 45555669999999999999999999999999877 5678899998888876
No 456
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.14 E-value=0.0005 Score=64.29 Aligned_cols=54 Identities=30% Similarity=0.370 Sum_probs=46.5
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeec
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRT 385 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~ 385 (617)
|++++|..++|||+++++++.+.|...+.+|++.++..+.+.++++.+.|++--
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D 55 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWD 55 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEE
Confidence 455556669999999999999999999999999999999999999888887653
No 457
>KOG0393|consensus
Probab=97.11 E-value=0.00059 Score=66.25 Aligned_cols=53 Identities=25% Similarity=0.281 Sum_probs=46.6
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEEC-CEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG-ENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d-~~~v~LqI~ 384 (617)
+|++++|+..+||||++..|..+.|+..|.||+...| +..++++ |+.|.|.+-
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~Lw 58 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLW 58 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeee
Confidence 5677777779999999999999999999999999888 7789995 999988754
No 458
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.11 E-value=0.00045 Score=68.98 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=45.0
Q ss_pred eeeeeeecccccccceeccccCccc-CccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~-~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++++|..+||||+++++|+.+.|. ..|.||++.++..+++.+++..+.|+|-
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~ 55 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVI 55 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEE
Confidence 5566666699999999999988887 7788999888889999999988888754
No 459
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.09 E-value=0.0006 Score=64.15 Aligned_cols=53 Identities=11% Similarity=0.114 Sum_probs=45.4
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
|++++|.+++|||+++.+++.+.|...+.+|++.++..+.+.++++.+.|+|-
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 54 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFW 54 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEE
Confidence 45556666999999999999999998888999988888888999998888863
No 460
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.09 E-value=0.00055 Score=66.46 Aligned_cols=53 Identities=32% Similarity=0.360 Sum_probs=44.7
Q ss_pred eeeeeeecccccccceeccccCcccC-ccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSH-HISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~-~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
|++++|..++|||++++++..+.|.. .+.+|++.+|..+.+.+++..+.++|-
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 55 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIW 55 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEE
Confidence 45666666999999999999998864 688999999988889999988888753
No 461
>KOG1491|consensus
Probab=97.08 E-value=0.0019 Score=66.93 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=46.8
Q ss_pred CCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEEC---------------CeEEEEEEEecCCcccc----cccch
Q psy3029 113 FWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG---------------ENKVKLQVWDTAGQERF----RSMAP 173 (617)
Q Consensus 113 G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~---------------~~~~~l~i~Dt~G~e~~----~~~~~ 173 (617)
|.||||||||+|.|+.....+...|-..++-..-.+.+. .....++++|++|.-+- ..+-.
T Consensus 27 GlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN 106 (391)
T KOG1491|consen 27 GLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLGN 106 (391)
T ss_pred eCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCchH
Confidence 339999999999999876544333322221111122221 13457999999986322 22333
Q ss_pred hh---hccCCEEEEEEeCCC
Q psy3029 174 MY---YRNANAALLVFDITQ 190 (617)
Q Consensus 174 ~~---~~~ad~iIlV~Dis~ 190 (617)
.| ++.+|+++-|+++..
T Consensus 107 ~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 107 KFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred HHHHhhhhccceeEEEEecC
Confidence 33 568999999987643
No 462
>KOG2423|consensus
Probab=97.06 E-value=0.0018 Score=67.97 Aligned_cols=84 Identities=18% Similarity=0.149 Sum_probs=53.0
Q ss_pred hhccCCEEEEEEeCCChhh--HHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCC
Q psy3029 175 YYRNANAALLVFDITQYHS--FAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQ 252 (617)
Q Consensus 175 ~~~~ad~iIlV~Dis~~~S--~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAkt 252 (617)
.+..+|++|-|+|++||-. -..+.+++.. ..+. ..+|+|+||+||... .++..-...+.+++-.--|..|-.+
T Consensus 210 ViDSSDVvvqVlDARDPmGTrc~~ve~ylkk---e~ph-KHli~vLNKvDLVPt-wvt~~Wv~~lSkeyPTiAfHAsi~n 284 (572)
T KOG2423|consen 210 VIDSSDVVVQVLDARDPMGTRCKHVEEYLKK---EKPH-KHLIYVLNKVDLVPT-WVTAKWVRHLSKEYPTIAFHASINN 284 (572)
T ss_pred hhcccceeEEeeeccCCcccccHHHHHHHhh---cCCc-ceeEEEeeccccccH-HHHHHHHHHHhhhCcceeeehhhcC
Confidence 3558999999999999864 2334444433 3333 478999999999652 2333333444555544456667667
Q ss_pred CCCHHHHHHHH
Q psy3029 253 DQGIEDVFLNV 263 (617)
Q Consensus 253 g~gI~eLf~~I 263 (617)
..|--.|++.|
T Consensus 285 sfGKgalI~ll 295 (572)
T KOG2423|consen 285 SFGKGALIQLL 295 (572)
T ss_pred ccchhHHHHHH
Confidence 77766666544
No 463
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.05 E-value=0.00064 Score=63.53 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=43.4
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEe
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI 383 (617)
+|++++|..++|||+++++++.+.|...+.||++..| .+.+.++++.++++|
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i 54 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDI 54 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEE
Confidence 4555666669999999999999999988999998766 677889998888776
No 464
>KOG2485|consensus
Probab=97.05 E-value=0.0019 Score=66.19 Aligned_cols=174 Identities=16% Similarity=0.035 Sum_probs=93.8
Q ss_pred ecCCccc-ccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHH
Q psy3029 161 DTAGQER-FRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSK 239 (617)
Q Consensus 161 Dt~G~e~-~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~ 239 (617)
+.+|+-- --..++.-+...|+||-|=|++-|-|-.+. .+.+..+ ..|-|||.||+||.+..+ ....++.+..
T Consensus 28 wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~-----~~~~~~~-~k~riiVlNK~DLad~~~-~k~~iq~~~~ 100 (335)
T KOG2485|consen 28 WFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNE-----LFQDFLP-PKPRIIVLNKMDLADPKE-QKKIIQYLEW 100 (335)
T ss_pred cCchHHHHHHHHHHhhcccccEEEEeeccccCCccccH-----HHHHhcC-CCceEEEEecccccCchh-hhHHHHHHHh
Confidence 4566521 113345567789999999999888654331 1222222 357899999999976432 1223333443
Q ss_pred hcCCeEEEEcCC--CCCCHHHHHHHHHHHHHHhhhcccccccccccccCCccCCCCCCcccccCCCCCCCCCCchhhhhe
Q psy3029 240 SIGGTYYETSAL--QDQGIEDVFLNVSKGLICLSQESLHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLTEAETAK 317 (617)
Q Consensus 240 ~~g~~~~evSAk--tg~gI~eLf~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ss~~~~~~~~~~~~v 317 (617)
+....++..++. ...++..++..+.....+..... .....+..+
T Consensus 101 ~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~i----------------------------------rt~~~~~~v 146 (335)
T KOG2485|consen 101 QNLESYIKLDCNKDCNKQVSPLLKILTILSEELVRFI----------------------------------RTLNSEYNV 146 (335)
T ss_pred hcccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhh----------------------------------cccCCceeE
Confidence 433344444444 33346666655443332211000 001124568
Q ss_pred eeeccCCCCCCCcceeeeeeecccccccceecccc------CcccCccCCccceeeEEEEEEECCEEEEEEeecCCCcee
Q psy3029 318 FVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIG------KMFSHHISPTIGASFFTAKINVGENKVKLQLRTGLKVSK 391 (617)
Q Consensus 318 ~ivG~~~~s~~~~~~~~~~g~~~vGKssi~~~~~~------~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~~~~ 391 (617)
+|||-| +||||++++.... +.-.....|.|..+.....-..+...|-+=-++|..+-.
T Consensus 147 mVvGvP----------------NVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~ 210 (335)
T KOG2485|consen 147 MVVGVP----------------NVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPS 210 (335)
T ss_pred EEEcCC----------------CCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCC
Confidence 888888 9999999986653 222334456665555332222234445555566665433
No 465
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.05 E-value=0.00072 Score=63.12 Aligned_cols=53 Identities=36% Similarity=0.414 Sum_probs=44.9
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++++|.+++|||++++++....+...+.+|++.++....+.++++.+.+++-
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 54 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIW 54 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEE
Confidence 45555555999999999999999988899999999998999999987777653
No 466
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.05 E-value=0.00054 Score=64.22 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=43.4
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEe
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI 383 (617)
|++++|..++|||++++++..+.|...+.||++..+ .+.+.++++.++|++
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i 52 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDI 52 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEE
Confidence 556666669999999999999999999999998655 788899998888876
No 467
>PRK13796 GTPase YqeH; Provisional
Probab=97.04 E-value=0.00085 Score=72.18 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=41.3
Q ss_pred CccccCCCCCCCCHHHHHHHHHcCCC----CCccCCCcceeEEEEEEEECCeEEEEEEEecCCcc
Q psy3029 106 NCFEANWFWLGVGKTSMVVRYIGKMF----SHHISPTIGASFFTAKINVGENKVKLQVWDTAGQE 166 (617)
Q Consensus 106 ~~~~~i~G~~nVGKSSLinrl~~~~~----~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e 166 (617)
...++++|.+|||||||||+|+.... .....+.+|.+.....+.+++. ..++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 34567778899999999999985431 2234566777777666666443 3799999974
No 468
>PRK14974 cell division protein FtsY; Provisional
Probab=97.02 E-value=0.0005 Score=72.79 Aligned_cols=95 Identities=19% Similarity=0.235 Sum_probs=57.5
Q ss_pred EEEEEEecCCcccccc-c---chhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccc
Q psy3029 155 VKLQVWDTAGQERFRS-M---APMYY--RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSRE 228 (617)
Q Consensus 155 ~~l~i~Dt~G~e~~~~-~---~~~~~--~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~ 228 (617)
+.+.|+||+|...... + .+.+. .+.|.++||+|+..... .+ +....+....+ .--+|.||.|....-
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d--~~-~~a~~f~~~~~---~~giIlTKlD~~~~~- 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND--AV-EQAREFNEAVG---IDGVILTKVDADAKG- 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh--HH-HHHHHHHhcCC---CCEEEEeeecCCCCc-
Confidence 4689999999753221 1 12222 25789999999866432 11 11222222121 235889999975322
Q ss_pred cCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHH
Q psy3029 229 VNREEAFHYSKSIGGTYYETSALQDQGIEDVFL 261 (617)
Q Consensus 229 v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~ 261 (617)
-.+..++...+.|+.+++ +|++++++..
T Consensus 296 ---G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 296 ---GAALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred ---cHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 234556667788998887 7999988754
No 469
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.01 E-value=0.00069 Score=68.81 Aligned_cols=61 Identities=20% Similarity=0.124 Sum_probs=35.7
Q ss_pred CCCccccCCCCCCCCHHHHHHHHHcCCCCC--ccCC----CcceeEEEEEEEECCeEEEEEEEecCCcccc
Q psy3029 104 VPNCFEANWFWLGVGKTSMVVRYIGKMFSH--HISP----TIGASFFTAKINVGENKVKLQVWDTAGQERF 168 (617)
Q Consensus 104 ~~~~~~~i~G~~nVGKSSLinrl~~~~~~~--~~~~----t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~ 168 (617)
+..-..+++|.+|||||||+|+|++..... .... ....+.....+.+.+ -.++||||...+
T Consensus 118 l~~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~ 184 (245)
T TIGR00157 118 LQNRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEF 184 (245)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCcccc
Confidence 334466677779999999999998753211 1111 111233333344432 269999997543
No 470
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.01 E-value=0.00071 Score=63.41 Aligned_cols=52 Identities=27% Similarity=0.296 Sum_probs=42.6
Q ss_pred eeeeeeecccccccceeccccC--cccCccCCccceeeEEEEEEEC-CEEEEEEe
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGK--MFSHHISPTIGASFFTAKINVG-ENKVKLQL 383 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~--~f~~~~~pTIg~df~~k~v~~d-~~~v~LqI 383 (617)
|++++|.+++|||++++++..+ .|...|.||+|.++..+.+.++ +..+.|++
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 56 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFI 56 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEE
Confidence 4556666699999999999865 7889999999999988888886 46677765
No 471
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.00 E-value=0.0012 Score=70.86 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=38.5
Q ss_pred cccCCCCCCCCHHHHHHHHHcCCC----CCccCCCcceeEEEEEEEECCeEEEEEEEecCCccc
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGKMF----SHHISPTIGASFFTAKINVGENKVKLQVWDTAGQER 167 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~~~----~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~ 167 (617)
.++++|.+|||||||+|+|++... .....+.+|.+.....+.+++. +.++||||...
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~~ 216 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGIIN 216 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCCC
Confidence 345555599999999999997532 1244556676666555554332 57999999753
No 472
>KOG2484|consensus
Probab=97.00 E-value=0.00035 Score=73.54 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=45.3
Q ss_pred CccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCc
Q psy3029 106 NCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQ 165 (617)
Q Consensus 106 ~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~ 165 (617)
+.+++|+|+|||||||+||+|...+. -...+++|++...+.+..+. .+.|+|.||.
T Consensus 252 sIrvGViG~PNVGKSSvINsL~~~k~-C~vg~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 252 SIRVGIIGYPNVGKSSVINSLKRRKA-CNVGNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred ceEeeeecCCCCChhHHHHHHHHhcc-ccCCCCccchhhhhheeccC---CceeccCCce
Confidence 47888889999999999999998773 45667888887777776554 4789999996
No 473
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.99 E-value=0.0018 Score=79.76 Aligned_cols=106 Identities=19% Similarity=0.244 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHcCCCCCc------cCCCcceeEEEEEEEECCeEEEEEEEecCCcc--------cccccchhhh----
Q psy3029 115 LGVGKTSMVVRYIGKMFSHH------ISPTIGASFFTAKINVGENKVKLQVWDTAGQE--------RFRSMAPMYY---- 176 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~------~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e--------~~~~~~~~~~---- 176 (617)
+|+|||||+++- +-.|.-. ....++.+. .....+.+ +-.++||+|.. .....|..++
T Consensus 120 ~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~ 194 (1169)
T TIGR03348 120 PGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLR 194 (1169)
T ss_pred CCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHHHHHHHHH
Confidence 999999999987 3333211 111122221 11222222 34589999931 1222343333
Q ss_pred -----ccCCEEEEEEeCCChhh--H-------HHHHHHHHHHHhcCCCCCeEEEEEECCCCCC
Q psy3029 177 -----RNANAALLVFDITQYHS--F-------AAIKTWVKELKRNVDEPLVLCVVGNKTDLES 225 (617)
Q Consensus 177 -----~~ad~iIlV~Dis~~~S--~-------~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~ 225 (617)
+..++||+++|+.+-.. - ..+...+.++.+...-.+||.||.||+|+..
T Consensus 195 k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 195 KHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 25899999999876421 1 2345567777777777799999999999863
No 474
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=96.98 E-value=0.00074 Score=63.65 Aligned_cols=54 Identities=28% Similarity=0.396 Sum_probs=44.2
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeec
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRT 385 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~ 385 (617)
++++++|..++|||+++++++.+.|...+.||++..| .+.+..+++.+.|++--
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D 55 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITD 55 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEE
Confidence 4556666669999999999999999999999998777 66777888888877653
No 475
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.97 E-value=0.00074 Score=63.87 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=43.9
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++++|..++|||++++++..+.|...+.||++..| .+.+.+++..+.++|-
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~ 54 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEIL 54 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEE
Confidence 445555559999999999999999999999999776 7889999988888864
No 476
>PRK12289 GTPase RsgA; Reviewed
Probab=96.97 E-value=0.0012 Score=70.52 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=34.2
Q ss_pred cccCCCCCCCCHHHHHHHHHcCCCCCccCCCcc-------eeEEEEEEEECCeEEEEEEEecCCccc
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIG-------ASFFTAKINVGENKVKLQVWDTAGQER 167 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g-------~~~~~~~i~~~~~~~~l~i~Dt~G~e~ 167 (617)
..+|+|.+|||||||||+|+.... .......+ .+.....+.+.+.. .++||||...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~-~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE-LRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc-cccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 355666699999999999996542 22222222 23334444443332 6899999754
No 477
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=96.97 E-value=0.00083 Score=63.91 Aligned_cols=52 Identities=29% Similarity=0.240 Sum_probs=43.4
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
|++++|..++|||+++.++..+.|...|.||+ .++..+.+.+++..++++|-
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~ 53 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLC 53 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEE
Confidence 56666777999999999999999999999988 55557788999988888754
No 478
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=96.95 E-value=0.00078 Score=63.47 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=42.2
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++++|..++|||+++.+|+.+.|...+.|+ +.+| .+++.++++.+.|+|.
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~ 52 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIR 52 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEE
Confidence 4666777799999999999999998877554 6667 5889999999988885
No 479
>cd00600 Sm_like The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=96.93 E-value=0.0034 Score=49.40 Aligned_cols=62 Identities=23% Similarity=0.369 Sum_probs=49.1
Q ss_pred hHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEE
Q psy3029 456 ITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRI 522 (617)
Q Consensus 456 ~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~ 522 (617)
+..++|++|.|+++||..|.|+|.++..-+.++|+-+...... ........++|.+..|+.|
T Consensus 1 l~~~~g~~V~V~l~~g~~~~G~L~~~D~~~Ni~L~~~~~~~~~-----~~~~~~~~~~irG~~I~~I 62 (63)
T cd00600 1 LKDLVGKTVRVELKDGRVLEGVLVAFDKYMNLVLDDVEETIKE-----GKKRVLGLVLIRGDNVRLV 62 (63)
T ss_pred ChHHCCCEEEEEECCCcEEEEEEEEECCCCCEEECCEEEEecC-----CcEEECCeEEEECCEEEEE
Confidence 3568999999999999999999999999999999888765433 1223445778888887765
No 480
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.93 E-value=0.00083 Score=66.35 Aligned_cols=53 Identities=32% Similarity=0.308 Sum_probs=46.0
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEe
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI 383 (617)
++++++|.+++||||+++++..+.|...+.||++..|..+.+...+..+++++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 58 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQL 58 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEe
Confidence 56777777799999999999999999999999999998888888777666664
No 481
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=96.91 E-value=0.001 Score=62.04 Aligned_cols=52 Identities=31% Similarity=0.424 Sum_probs=43.6
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEe
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI 383 (617)
+++++|..++|||++++++....+...+.||++.+|....+.++++.+.|++
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 53 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAI 53 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEE
Confidence 4555555599999999999999998888999999998888888887777664
No 482
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.91 E-value=0.0019 Score=60.97 Aligned_cols=63 Identities=16% Similarity=0.102 Sum_probs=35.9
Q ss_pred EEEEEEecCCcccccccchh--------hhccCCEEEEEEeCCChhh-HHHHHHHHHHHHhcCCCCCeEEEEEECCCC
Q psy3029 155 VKLQVWDTAGQERFRSMAPM--------YYRNANAALLVFDITQYHS-FAAIKTWVKELKRNVDEPLVLCVVGNKTDL 223 (617)
Q Consensus 155 ~~l~i~Dt~G~e~~~~~~~~--------~~~~ad~iIlV~Dis~~~S-~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL 223 (617)
....++|++|..+-..+... ..-.+|.+++++|+..... +.....+..++.. .+ +||.||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~---ad---~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF---AD---RILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH---CC---EEEEecccC
Confidence 45678899997533222222 2236889999999755332 1111223344433 22 578999996
No 483
>cd01724 Sm_D1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D1 heterodimerizes with subunit D2 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing DB, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=96.90 E-value=0.0072 Score=51.40 Aligned_cols=71 Identities=8% Similarity=0.085 Sum_probs=58.6
Q ss_pred hHhHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEecc
Q psy3029 451 RFMQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAKN 526 (617)
Q Consensus 451 r~~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~~ 526 (617)
+++.++..++|+.|+|.+|||..|+|.+.++..-+-++|+=|........ ..-.+.+.|.+..|.-+.++|
T Consensus 1 ~~~~fL~~l~g~~V~VeLKng~~~~G~L~~vD~~MNl~L~~a~~~~~~~~-----~~~~~~v~IRG~nI~yi~lPd 71 (90)
T cd01724 1 KLVRFLMKLTNETVTIELKNGTIVHGTITGVDPSMNTHLKNVKLTLKGRN-----PVPLDTLSIRGNNIRYFILPD 71 (90)
T ss_pred CHhHHHHhCCCCEEEEEECCCCEEEEEEEEEcCceeEEEEEEEEEcCCCc-----eeEcceEEEeCCEEEEEEcCC
Confidence 46788999999999999999999999999999999999999877643211 112367889999999999876
No 484
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=96.90 E-value=0.001 Score=63.03 Aligned_cols=52 Identities=23% Similarity=0.262 Sum_probs=43.1
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
|++++|..++|||++++++..+.|...+.||++..| ...+.++++.+.++|-
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~ 53 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLY 53 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEE
Confidence 556666669999999999999999988999997665 6678899988877655
No 485
>KOG4252|consensus
Probab=96.89 E-value=3.3e-05 Score=72.30 Aligned_cols=52 Identities=31% Similarity=0.325 Sum_probs=45.2
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEe
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI 383 (617)
|++++|..+|||++++.||+.+-|...|.-|||+||....++++++.+.+++
T Consensus 22 K~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~ml 73 (246)
T KOG4252|consen 22 KFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSML 73 (246)
T ss_pred EEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHH
Confidence 4444455599999999999999999999999999999999999998877764
No 486
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.88 E-value=0.012 Score=62.07 Aligned_cols=75 Identities=21% Similarity=0.251 Sum_probs=43.2
Q ss_pred cCCEEEEEEeCCChhh-HHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC--CeEEEEcCCCCC
Q psy3029 178 NANAALLVFDITQYHS-FAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG--GTYYETSALQDQ 254 (617)
Q Consensus 178 ~ad~iIlV~Dis~~~S-~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g--~~~~evSAktg~ 254 (617)
..|.+|-|+|+.+... ...+.+.+..-...+ + +||+||.|+.+... .+......++++ ++++.+|. .+.
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A--D---~ivlNK~Dlv~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~ 187 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA--D---VIVLNKTDLVDAEE--LEALEARLRKLNPRARIIETSY-GDV 187 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC--c---EEEEecccCCCHHH--HHHHHHHHHHhCCCCeEEEccc-cCC
Confidence 4688999999877543 222333222212222 1 68999999987553 344455555554 47888776 344
Q ss_pred CHHHHH
Q psy3029 255 GIEDVF 260 (617)
Q Consensus 255 gI~eLf 260 (617)
...+++
T Consensus 188 ~~~~ll 193 (323)
T COG0523 188 DLAELL 193 (323)
T ss_pred CHHHhh
Confidence 444333
No 487
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.88 E-value=0.0058 Score=58.35 Aligned_cols=127 Identities=17% Similarity=0.262 Sum_probs=64.9
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec-CCcc----------------------ccc--
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT-AGQE----------------------RFR-- 169 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt-~G~e----------------------~~~-- 169 (617)
+|+|||||+++++..- .....+.-| |++..+.-++..+-|.+.|. .|.+ .+.
T Consensus 8 pG~GKTTll~k~i~~l-~~~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e~fe~~ 84 (168)
T PF03266_consen 8 PGVGKTTLLKKVIEEL-KKKGLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLESFEEI 84 (168)
T ss_dssp TTSSHHHHHHHHHHHH-HHTCGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HHHHHCC
T ss_pred CCCCHHHHHHHHHHHh-hccCCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHHHHHHH
Confidence 9999999999987531 111112333 44555555666677777777 3321 011
Q ss_pred --ccchhhhccCCEEEEEEeCCChhhHHH-HHHHHHHHHhcCCCCCeEEEEEECC-CCCCccccCHHHHHHHHHhcCCeE
Q psy3029 170 --SMAPMYYRNANAALLVFDITQYHSFAA-IKTWVKELKRNVDEPLVLCVVGNKT-DLESSREVNREEAFHYSKSIGGTY 245 (617)
Q Consensus 170 --~~~~~~~~~ad~iIlV~Dis~~~S~~~-l~~~l~~i~~~~~~~iPvIlVgNK~-DL~~~~~v~~~e~~~~~~~~g~~~ 245 (617)
...+..+..+| ++|+|=--+ ++. ...|.+.+......+.|+|.++-+. +.. -..++....++.+
T Consensus 85 ~~~~L~~~~~~~~--liviDEIG~--mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~~~~--------~l~~i~~~~~~~i 152 (168)
T PF03266_consen 85 GLPALRNALSSSD--LIVIDEIGK--MELKSPGFREAVEKLLDSNKPVIGVVHKRSDNP--------FLEEIKRRPDVKI 152 (168)
T ss_dssp CCCCCHHHHHCCH--EEEE---ST--TCCC-CHHHHHHHHHHCTTSEEEEE--SS--SC--------CHHHHHTTTTSEE
T ss_pred HHHHHHhhcCCCC--EEEEeccch--hhhcCHHHHHHHHHHHcCCCcEEEEEecCCCcH--------HHHHHHhCCCcEE
Confidence 12233334556 666672221 110 1234455554444557888888777 431 1345666677899
Q ss_pred EEEcCCCCCCH
Q psy3029 246 YETSALQDQGI 256 (617)
Q Consensus 246 ~evSAktg~gI 256 (617)
++++..+..-+
T Consensus 153 ~~vt~~NRd~l 163 (168)
T PF03266_consen 153 FEVTEENRDAL 163 (168)
T ss_dssp EE--TTTCCCH
T ss_pred EEeChhHHhhH
Confidence 99977665543
No 488
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.86 E-value=0.00095 Score=64.25 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=42.0
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEEC-CEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG-ENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d-~~~v~LqI~ 384 (617)
|++++|..++|||++++++..+.|...+.||++.+|. +.+..+ ++.+.|+|-
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~ 54 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALW 54 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEE
Confidence 3455555599999999999999999999999999984 456775 778888763
No 489
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.85 E-value=0.0016 Score=61.36 Aligned_cols=54 Identities=30% Similarity=0.385 Sum_probs=46.7
Q ss_pred cceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEe
Q psy3029 330 NCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383 (617)
Q Consensus 330 ~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI 383 (617)
.++++++|.+++|||+++.++..+.+...+.+|+|.++..+.+.++++.+.+++
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 60 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQI 60 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEE
Confidence 356667777799999999999988888888999999999999999998887764
No 490
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=96.85 E-value=0.001 Score=63.00 Aligned_cols=50 Identities=26% Similarity=0.350 Sum_probs=42.9
Q ss_pred eeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 334 ANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 334 ~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++|..++|||+++.+|..+.|...|.||++..| .+.+.++++.+.|+|-
T Consensus 2 ~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~ 51 (174)
T smart00174 2 VVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLW 51 (174)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEE
Confidence 4566669999999999999999999999998877 5678899998888864
No 491
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=96.84 E-value=0.001 Score=65.07 Aligned_cols=54 Identities=22% Similarity=0.054 Sum_probs=39.0
Q ss_pred ceeeeeeeccccccccee-cccc-----CcccCccCCccce-eeEEEE--------EEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVV-RYIG-----KMFSHHISPTIGA-SFFTAK--------INVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~-~~~~-----~~f~~~~~pTIg~-df~~k~--------v~~d~~~v~LqI~ 384 (617)
+|++++|..+|||||++. ++.. +.|...|.||||. ++..+. +.++++.++|+|-
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iw 71 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLW 71 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEE
Confidence 567777777999999996 5543 3466788999974 433332 2679999999875
No 492
>KOG0463|consensus
Probab=96.84 E-value=0.0029 Score=65.98 Aligned_cols=158 Identities=11% Similarity=0.072 Sum_probs=85.0
Q ss_pred cCCCCCCccccCCCCCCCCHHHHHHHHHcCCCC------------------CccCCCcceeEEEEEEE------------
Q psy3029 100 INSRVPNCFEANWFWLGVGKTSMVVRYIGKMFS------------------HHISPTIGASFFTAKIN------------ 149 (617)
Q Consensus 100 ~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~------------------~~~~~t~g~~~~~~~i~------------ 149 (617)
.+.++...|+|++|...+|||||+--|..+... .-....+|.++.-....
T Consensus 127 ~~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~ 206 (641)
T KOG0463|consen 127 TEKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGH 206 (641)
T ss_pred CCccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCC
Confidence 345677777888888999999998776543221 11122333332211111
Q ss_pred -------ECCeEEEEEEEecCCcccccccchhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEEC
Q psy3029 150 -------VGENKVKLQVWDTAGQERFRSMAPMYYR--NANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNK 220 (617)
Q Consensus 150 -------~~~~~~~l~i~Dt~G~e~~~~~~~~~~~--~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK 220 (617)
..+..-.+.|+|.+|+|+|-...-.-+. --|..++++-+.-.- .-.-.+.+-.... ..+|+++|.+|
T Consensus 207 ~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLALa---L~VPVfvVVTK 282 (641)
T KOG0463|consen 207 NLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLALA---LHVPVFVVVTK 282 (641)
T ss_pred cccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhhh---hcCcEEEEEEe
Confidence 0112235789999999988654322222 245566666543221 0001112222211 23799999999
Q ss_pred CCCCCccccCHHH---HHHHHHh--------------------------cCCeEEEEcCCCCCCHHHHHHH
Q psy3029 221 TDLESSREVNREE---AFHYSKS--------------------------IGGTYYETSALQDQGIEDVFLN 262 (617)
Q Consensus 221 ~DL~~~~~v~~~e---~~~~~~~--------------------------~g~~~~evSAktg~gI~eLf~~ 262 (617)
+|+..... ..+. +..+.+. .-|++|.+|-.+|.|++-|...
T Consensus 283 IDMCPANi-LqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 283 IDMCPANI-LQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred eccCcHHH-HHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 99865432 1111 1122111 1258899999999999766544
No 493
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=96.81 E-value=0.00086 Score=63.08 Aligned_cols=51 Identities=25% Similarity=0.457 Sum_probs=43.1
Q ss_pred eeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 333 EANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 333 ~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++|.+++|||+++.+++.+.|...|.||++..| .+.+.++++.++++|-
T Consensus 2 i~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~ 52 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEIL 52 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEE
Confidence 45666669999999999999999888999998777 6778899998888764
No 494
>PF01423 LSM: LSM domain ; InterPro: IPR001163 This family is found in Lsm (like-Sm) proteins and in bacterial Lsm-related Hfq proteins. In each case, the domain adopts a core structure consisting of an open beta-barrel with an SH3-like topology. Lsm (like-Sm) proteins have diverse functions, and are thought to be important modulators of RNA biogenesis and function [, ]. The Sm proteins form part of specific small nuclear ribonucleoproteins (snRNPs) that are involved in the processing of pre-mRNAs to mature mRNAs, and are a major component of the eukaryotic spliceosome. Most snRNPs consist of seven Sm proteins (B/B', D1, D2, D3, E, F and G) arranged in a ring on a uridine-rich sequence (Sm site), plus a small nuclear RNA (snRNA) (either U1, U2, U5 or U4/6) []. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker []. In other snRNPs, certain Sm proteins are replaced with different Lsm proteins, such as with U7 snRNPs, in which the D1 and D2 Sm proteins are replaced with U7-specific Lsm10 and Lsm11 proteins, where Lsm11 plays a role in histone U7-specific RNA processing []. Lsm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Lsm proteins. The pleiotropic translational regulator Hfq (host factor Q) is a bacterial Lsm-like protein, which modulates the structure of numerous RNA molecules by binding preferentially to A/U-rich sequences in RNA []. Hfq forms an Lsm-like fold, however, unlike the heptameric Sm proteins, Hfq forms a homo-hexameric ring.; PDB: 1D3B_K 2Y9D_D 2Y9A_D 2Y9C_R 3VRI_C 2Y9B_K 3QUI_D 3M4G_H 3INZ_E 1U1S_C ....
Probab=96.79 E-value=0.0058 Score=48.82 Aligned_cols=65 Identities=22% Similarity=0.357 Sum_probs=52.0
Q ss_pred HhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEE
Q psy3029 455 AITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIE 523 (617)
Q Consensus 455 ~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~ 523 (617)
++..++|++|.|.++||..|+|+|.++..-+-++|+=|........ .......+++.+..|+.|.
T Consensus 2 ~L~~~~g~~V~V~l~~g~~~~G~L~~~D~~~Nl~L~~~~~~~~~~~----~~~~~~~~~irG~~I~~I~ 66 (67)
T PF01423_consen 2 FLQKLIGKRVRVELKNGRTYRGTLVSFDQFMNLVLSDVTETIKNGP----EKRSLGLVFIRGSNIRYIS 66 (67)
T ss_dssp HHHHTTTSEEEEEETTSEEEEEEEEEEETTEEEEEEEEEEEETTES----EEEEEEEEEEEGGGEEEEE
T ss_pred hhHHhCCcEEEEEEeCCEEEEEEEEEeechheEEeeeEEEEECCCC----cEeECcEEEEECCEEEEEE
Confidence 4678899999999999999999999999999999999988744322 1222346788888888765
No 495
>KOG3859|consensus
Probab=96.79 E-value=0.0024 Score=64.23 Aligned_cols=114 Identities=19% Similarity=0.293 Sum_probs=68.5
Q ss_pred eEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCc----cCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 85 IKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHH----ISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 85 ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~----~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
+.|+++|. .|.|||||+..|.+-+|... ..|++.....+..+.-.+-.+++.|+
T Consensus 43 FNilCvGE----------------------Tg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv 100 (406)
T KOG3859|consen 43 FNILCVGE----------------------TGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIV 100 (406)
T ss_pred EEEEEecc----------------------CCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEE
Confidence 68888888 99999999999998877443 33444443333333335567899999
Q ss_pred ecCCcc-------cccc-------cchhhh---------------ccCCEEEEEEeCCChhhHHHHHH-HHHHHHhcCCC
Q psy3029 161 DTAGQE-------RFRS-------MAPMYY---------------RNANAALLVFDITQYHSFAAIKT-WVKELKRNVDE 210 (617)
Q Consensus 161 Dt~G~e-------~~~~-------~~~~~~---------------~~ad~iIlV~Dis~~~S~~~l~~-~l~~i~~~~~~ 210 (617)
||.|.- .|.. +...|+ ...+++++.+..+. .++..++- .+..+. .
T Consensus 101 ~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld----s 175 (406)
T KOG3859|consen 101 DTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD----S 175 (406)
T ss_pred eecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh----h
Confidence 999851 1111 111221 14677777777654 34554442 122222 2
Q ss_pred CCeEEEEEECCCCCC
Q psy3029 211 PLVLCVVGNKTDLES 225 (617)
Q Consensus 211 ~iPvIlVgNK~DL~~ 225 (617)
.+.||-|+-|+|...
T Consensus 176 kVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 176 KVNIIPVIAKADTIS 190 (406)
T ss_pred hhhhHHHHHHhhhhh
Confidence 345666778888643
No 496
>cd01721 Sm_D3 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D3 heterodimerizes with subunit B and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=96.78 E-value=0.0096 Score=48.18 Aligned_cols=68 Identities=12% Similarity=0.089 Sum_probs=53.9
Q ss_pred HHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEecc
Q psy3029 454 QAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAKN 526 (617)
Q Consensus 454 ~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~~ 526 (617)
-++..++|+.|+|.+|||..|.|.+.++..-+-++|+=|...+.... . .-.+.+.|.+..|.-|..+|
T Consensus 3 ~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~~~~~~g~----~-~~~~~v~IRG~nI~~v~lPd 70 (70)
T cd01721 3 KLLHEAEGHIVTVELKTGEVYRGKLIEAEDNMNCQLKDVTVTARDGR----V-SQLEQVYIRGSKIRFFILPD 70 (70)
T ss_pred HHHhhCCCCEEEEEECCCcEEEEEEEEEcCCceeEEEEEEEECCCCc----E-eEcCcEEEeCCEEEEEEeCC
Confidence 46778899999999999999999999999999999999976533221 1 12367888888888877654
No 497
>cd01736 LSm14_N LSm14 (also known as RAP55) belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold, containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet, that associates with other Sm proteins to form hexameric and heptameric ring structures. In addition to the N-terminal Sm-like domain, LSm14 has an uncharacterized C-terminal domain containing a conserved DFDF box. In Xenopus laevis, LSm14 is an oocyte-specific constituent of ribonucleoprotein particles.
Probab=96.77 E-value=0.0056 Score=49.41 Aligned_cols=66 Identities=23% Similarity=0.386 Sum_probs=51.7
Q ss_pred HhhcCCEEEEEEeCCcEEEEEEeeecCC-ceEEEEeeeecCCCC-----CCCCCCCcccceeeeecCceeEE
Q psy3029 457 TLHIGDKVTVYTVHGKQFEGYLKTFSKQ-FELVISMTHQVDPEN-----PQCIDPNTVVDMKIFKLDDIVRI 522 (617)
Q Consensus 457 ~~~iG~~v~v~~~~G~~y~Gi~~~~s~~-~~~~l~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~d~v~~ 522 (617)
+..||+++.+-.|++.+|||+|++.+++ .-|+|+-++---.+. ...+..+++-+.++|.+.||-++
T Consensus 2 ~~~IG~~isLISk~~iRYeGiL~~In~~~sTi~L~nVr~fGTEgR~~~~~~ipp~~~vyd~IvFrgsDIkDL 73 (74)
T cd01736 2 TPYIGSKISLISKSDIRYEGILYTINTEDSTIALKNVRSFGTEGRPTDGPEIPPSDEVYDYIVFRGSDIKDL 73 (74)
T ss_pred ccccCceEEEEecCCcEEEEEEEeeccccCEEEeeeeEeecccCCCCCCCccCCCCcceeEEEEcCCccccc
Confidence 4689999999999999999999999865 678898877542221 12344577888999999998765
No 498
>PLN03118 Rab family protein; Provisional
Probab=96.73 E-value=0.0016 Score=64.26 Aligned_cols=51 Identities=31% Similarity=0.477 Sum_probs=41.1
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEe
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI 383 (617)
+++++|..++|||+++++++...+. .+.||+|.+|..+.+.+++..+.|+|
T Consensus 16 kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l 66 (211)
T PLN03118 16 KILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTI 66 (211)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEE
Confidence 3344444499999999999988774 56899999998899999998777775
No 499
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.73 E-value=0.0043 Score=64.03 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=58.3
Q ss_pred EEEEEEEecCCccccccc----chhh---h-----ccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECC
Q psy3029 154 KVKLQVWDTAGQERFRSM----APMY---Y-----RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKT 221 (617)
Q Consensus 154 ~~~l~i~Dt~G~e~~~~~----~~~~---~-----~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~ 221 (617)
.+.+.|+||+|....... ...+ . ...|.+++|+|++.. .+.+.. ...+.+..+ +--+|.||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~-~~~f~~~~~---~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQ-AKVFNEAVG---LTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHH-HHHHHhhCC---CCEEEEEcc
Confidence 467899999997533211 1111 1 138999999998753 223322 222222222 346889999
Q ss_pred CCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHH
Q psy3029 222 DLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFL 261 (617)
Q Consensus 222 DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~ 261 (617)
|.... .-.+..+....+.|+.+++ +|++++++..
T Consensus 228 De~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 228 DGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred CCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence 97432 2234566667789998888 8888877643
No 500
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.005 Score=67.03 Aligned_cols=94 Identities=14% Similarity=0.092 Sum_probs=55.1
Q ss_pred EEEEEEecCCccccc----ccchhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccc
Q psy3029 155 VKLQVWDTAGQERFR----SMAPMYYR--NANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSRE 228 (617)
Q Consensus 155 ~~l~i~Dt~G~e~~~----~~~~~~~~--~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~ 228 (617)
..+.++||+|..... .....+.. ...-.+||+|++.. ...+.+++....... .-=+|.||.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~~----~~~~I~TKlDEt~--- 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGHG----IHGCIITKVDEAA--- 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCCC----CCEEEEEeeeCCC---
Confidence 467899999964422 12222221 24467889998743 334444444433221 2247899999643
Q ss_pred cCHHHHHHHHHhcCCeEEEEcCCCCCCH-HHHH
Q psy3029 229 VNREEAFHYSKSIGGTYYETSALQDQGI-EDVF 260 (617)
Q Consensus 229 v~~~e~~~~~~~~g~~~~evSAktg~gI-~eLf 260 (617)
..-.+..++...++++.+++ +|.+| +++.
T Consensus 341 -~~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~ 370 (420)
T PRK14721 341 -SLGIALDAVIRRKLVLHYVT--NGQKVPEDLH 370 (420)
T ss_pred -CccHHHHHHHHhCCCEEEEE--CCCCchhhhh
Confidence 23345677778888887775 57777 4553
Done!