Query psy3029
Match_columns 617
No_of_seqs 770 out of 3764
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 23:42:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3029.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3029hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.6E-32 5.4E-37 271.6 19.1 166 83-270 12-177 (216)
2 2a5j_A RAS-related protein RAB 100.0 2.2E-27 7.5E-32 228.6 23.4 169 81-271 18-186 (191)
3 2gf9_A RAS-related protein RAB 100.0 2.9E-27 1E-31 227.2 23.5 168 81-270 19-186 (189)
4 2ew1_A RAS-related protein RAB 100.0 1.9E-27 6.5E-32 232.2 21.5 168 82-271 24-191 (201)
5 2hup_A RAS-related protein RAB 100.0 1.8E-27 6.2E-32 231.8 21.0 168 82-271 27-195 (201)
6 1r2q_A RAS-related protein RAB 100.0 2.4E-27 8.2E-32 222.0 21.0 163 83-267 5-167 (170)
7 2fu5_C RAS-related protein RAB 100.0 9.1E-28 3.1E-32 228.9 18.2 168 83-272 7-174 (183)
8 1z0f_A RAB14, member RAS oncog 100.0 4.4E-27 1.5E-31 222.4 22.2 165 82-268 13-177 (179)
9 3tkl_A RAS-related protein RAB 100.0 8.9E-27 3E-31 224.3 24.1 167 83-271 15-181 (196)
10 1z08_A RAS-related protein RAB 100.0 2.1E-27 7.3E-32 222.9 19.1 164 83-268 5-168 (170)
11 1z0j_A RAB-22, RAS-related pro 100.0 8.3E-27 2.8E-31 218.6 22.5 162 84-267 6-167 (170)
12 2oil_A CATX-8, RAS-related pro 100.0 8.2E-27 2.8E-31 224.6 23.0 168 82-271 23-190 (193)
13 2efe_B Small GTP-binding prote 100.0 6.6E-27 2.3E-31 222.1 22.0 166 82-269 10-175 (181)
14 1zbd_A Rabphilin-3A; G protein 100.0 9.7E-27 3.3E-31 226.0 23.4 167 83-271 7-173 (203)
15 3t5g_A GTP-binding protein RHE 100.0 5.2E-27 1.8E-31 223.2 21.0 166 82-270 4-170 (181)
16 2bme_A RAB4A, RAS-related prot 100.0 6.8E-27 2.3E-31 223.2 21.7 167 83-271 9-175 (186)
17 1ek0_A Protein (GTP-binding pr 100.0 6.1E-27 2.1E-31 219.2 20.6 153 115-267 12-167 (170)
18 2bcg_Y Protein YP2, GTP-bindin 99.9 1.6E-26 5.3E-31 225.2 23.9 167 83-271 7-173 (206)
19 3tw8_B RAS-related protein RAB 99.9 1.4E-26 4.9E-31 219.2 23.0 167 83-272 8-174 (181)
20 1g16_A RAS-related protein SEC 99.9 6.9E-27 2.3E-31 219.2 20.5 164 84-270 3-166 (170)
21 2g6b_A RAS-related protein RAB 99.9 1.4E-26 4.7E-31 219.7 22.1 166 82-269 8-174 (180)
22 2fg5_A RAB-22B, RAS-related pr 99.9 7.8E-27 2.7E-31 225.1 20.3 165 82-268 21-185 (192)
23 2o52_A RAS-related protein RAB 99.9 1E-26 3.5E-31 226.2 21.2 168 82-271 23-190 (200)
24 3dz8_A RAS-related protein RAB 99.9 1.5E-27 5.2E-32 229.8 15.2 168 82-271 21-188 (191)
25 2il1_A RAB12; G-protein, GDP, 99.9 6.9E-27 2.4E-31 225.7 19.8 166 82-269 24-190 (192)
26 1z2a_A RAS-related protein RAB 99.9 8.7E-27 3E-31 218.0 19.8 163 83-268 4-166 (168)
27 2hxs_A RAB-26, RAS-related pro 99.9 5.5E-27 1.9E-31 222.0 18.2 165 83-269 5-173 (178)
28 2y8e_A RAB-protein 6, GH09086P 99.9 8.9E-27 3E-31 220.3 19.6 163 83-267 13-175 (179)
29 2fn4_A P23, RAS-related protei 99.9 2.5E-26 8.4E-31 217.6 22.1 168 81-271 6-174 (181)
30 3cbq_A GTP-binding protein REM 99.9 1E-26 3.6E-31 225.5 19.8 166 82-269 21-188 (195)
31 3c5c_A RAS-like protein 12; GD 99.9 8.8E-27 3E-31 224.2 19.1 164 81-268 18-185 (187)
32 3kkq_A RAS-related protein M-R 99.9 3.3E-26 1.1E-30 218.1 22.8 165 82-269 16-182 (183)
33 3q85_A GTP-binding protein REM 99.9 1.9E-26 6.4E-31 216.5 20.2 164 84-269 2-167 (169)
34 2nzj_A GTP-binding protein REM 99.9 3E-26 1E-30 216.1 21.7 165 84-271 4-171 (175)
35 2iwr_A Centaurin gamma 1; ANK 99.9 3E-26 1E-30 217.4 21.7 161 82-271 5-171 (178)
36 3cpj_B GTP-binding protein YPT 99.9 1.2E-26 4E-31 229.6 19.7 168 82-271 11-178 (223)
37 1z06_A RAS-related protein RAB 99.9 1.5E-26 5.3E-31 222.1 19.7 166 81-268 17-187 (189)
38 3clv_A RAB5 protein, putative; 99.9 5.8E-26 2E-30 218.9 23.5 165 81-270 4-205 (208)
39 2p5s_A RAS and EF-hand domain 99.9 1.1E-26 3.6E-31 225.5 18.4 166 81-268 25-196 (199)
40 3ihw_A Centg3; RAS, centaurin, 99.9 4.8E-26 1.6E-30 218.7 22.2 162 80-270 16-181 (184)
41 3bc1_A RAS-related protein RAB 99.9 3.7E-26 1.3E-30 218.8 21.3 167 83-271 10-187 (195)
42 3q3j_B RHO-related GTP-binding 99.9 1.6E-26 5.5E-31 227.6 19.2 165 82-270 25-204 (214)
43 1x3s_A RAS-related protein RAB 99.9 6.8E-26 2.3E-30 217.7 22.5 164 83-269 14-178 (195)
44 3oes_A GTPase rhebl1; small GT 99.9 1.8E-26 6E-31 224.3 18.4 170 79-271 19-189 (201)
45 3cph_A RAS-related protein SEC 99.9 8.8E-26 3E-30 220.5 23.4 166 83-271 19-184 (213)
46 1wms_A RAB-9, RAB9, RAS-relate 99.9 5.8E-26 2E-30 214.8 21.1 164 83-269 6-174 (177)
47 1c1y_A RAS-related protein RAP 99.9 5.4E-26 1.8E-30 212.4 20.4 152 115-267 12-165 (167)
48 3q72_A GTP-binding protein RAD 99.9 5.1E-26 1.7E-30 212.8 20.1 162 84-269 2-164 (166)
49 3reg_A RHO-like small GTPase; 99.9 7.8E-26 2.7E-30 218.2 21.8 164 82-269 21-188 (194)
50 1u8z_A RAS-related protein RAL 99.9 5.6E-26 1.9E-30 212.0 19.8 153 115-268 13-166 (168)
51 2atx_A Small GTP binding prote 99.9 7.1E-26 2.4E-30 218.2 21.1 164 81-268 15-192 (194)
52 2f7s_A C25KG, RAS-related prot 99.9 2E-26 6.9E-31 226.3 17.6 169 81-271 22-201 (217)
53 2yc2_C IFT27, small RAB-relate 99.9 7.9E-27 2.7E-31 226.6 14.3 170 80-271 16-194 (208)
54 1kao_A RAP2A; GTP-binding prot 99.9 5.4E-26 1.9E-30 211.9 19.2 153 115-268 12-165 (167)
55 2atv_A RERG, RAS-like estrogen 99.9 8.5E-26 2.9E-30 218.4 20.3 167 80-270 24-192 (196)
56 2g3y_A GTP-binding protein GEM 99.9 1E-25 3.4E-30 222.0 20.1 164 83-269 36-203 (211)
57 2q3h_A RAS homolog gene family 99.9 1.7E-25 5.7E-30 216.9 21.4 167 81-271 17-197 (201)
58 2a9k_A RAS-related protein RAL 99.9 1.7E-25 5.7E-30 213.0 21.0 166 83-271 17-183 (187)
59 2bov_A RAla, RAS-related prote 99.9 2.7E-25 9.1E-30 215.7 22.7 166 83-271 13-179 (206)
60 1m7b_A RND3/RHOE small GTP-bin 99.9 7.8E-26 2.7E-30 216.5 18.4 163 82-268 5-182 (184)
61 1vg8_A RAS-related protein RAB 99.9 1.9E-25 6.4E-30 217.1 21.0 166 83-271 7-177 (207)
62 2j0v_A RAC-like GTP-binding pr 99.9 8.2E-26 2.8E-30 221.1 18.3 166 81-270 6-181 (212)
63 1ky3_A GTP-binding protein YPT 99.9 1E-25 3.4E-30 213.6 18.1 167 82-270 6-179 (182)
64 1gwn_A RHO-related GTP-binding 99.9 1E-25 3.6E-30 220.4 18.8 164 82-269 26-204 (205)
65 2gco_A H9, RHO-related GTP-bin 99.9 3.1E-25 1E-29 215.7 21.5 165 80-268 21-199 (201)
66 1mh1_A RAC1; GTP-binding, GTPa 99.9 2.6E-25 8.9E-30 211.7 20.0 162 83-268 4-179 (186)
67 4djt_A GTP-binding nuclear pro 99.9 1.4E-25 4.8E-30 220.4 18.4 167 82-270 9-176 (218)
68 4dsu_A GTPase KRAS, isoform 2B 99.9 9.1E-25 3.1E-29 208.5 22.8 165 83-271 3-168 (189)
69 2erx_A GTP-binding protein DI- 99.9 2E-25 6.9E-30 209.3 17.9 162 83-267 2-165 (172)
70 3bwd_D RAC-like GTP-binding pr 99.9 5.5E-26 1.9E-30 215.9 12.7 163 82-268 6-180 (182)
71 2fv8_A H6, RHO-related GTP-bin 99.9 7.6E-25 2.6E-29 213.9 20.9 166 80-269 21-200 (207)
72 2j1l_A RHO-related GTP-binding 99.9 4.5E-25 1.5E-29 216.9 19.4 163 83-269 33-209 (214)
73 2cjw_A GTP-binding protein GEM 99.9 1.2E-24 4E-29 210.5 21.7 164 84-270 6-173 (192)
74 2ce2_X GTPase HRAS; signaling 99.9 1.8E-24 6.1E-29 201.1 21.9 152 115-268 12-164 (166)
75 3con_A GTPase NRAS; structural 99.9 1.9E-24 6.3E-29 207.4 21.9 164 83-270 20-184 (190)
76 3t1o_A Gliding protein MGLA; G 99.9 1.1E-25 3.9E-30 216.2 13.2 165 81-271 11-194 (198)
77 3l0i_B RAS-related protein RAB 99.9 4.8E-27 1.6E-31 228.0 3.1 165 82-268 31-195 (199)
78 4bas_A ADP-ribosylation factor 99.9 6.2E-25 2.1E-29 211.9 16.8 165 81-271 14-191 (199)
79 4gzl_A RAS-related C3 botulinu 99.9 9.1E-25 3.1E-29 213.1 17.3 162 82-267 28-203 (204)
80 3gj0_A GTP-binding nuclear pro 99.9 2.7E-25 9.3E-30 219.2 13.7 164 82-270 13-176 (221)
81 2gf0_A GTP-binding protein DI- 99.9 1.8E-24 6.2E-29 208.6 19.0 162 83-268 7-170 (199)
82 1upt_A ARL1, ADP-ribosylation 99.9 3.3E-24 1.1E-28 201.3 16.4 158 83-269 6-169 (171)
83 2f9l_A RAB11B, member RAS onco 99.9 2.7E-23 9.3E-28 201.6 23.4 167 83-271 4-170 (199)
84 1r8s_A ADP-ribosylation factor 99.9 1.1E-24 3.9E-29 203.2 12.6 147 115-268 9-161 (164)
85 2zej_A Dardarin, leucine-rich 99.9 7.2E-25 2.5E-29 210.1 11.4 163 84-269 2-178 (184)
86 2hjg_A GTP-binding protein ENG 99.9 6.8E-26 2.3E-30 247.1 4.8 213 115-388 12-234 (436)
87 1mky_A Probable GTP-binding pr 99.9 8.1E-25 2.8E-29 238.8 13.3 213 115-387 10-238 (439)
88 1f6b_A SAR1; gtpases, N-termin 99.9 6E-24 2E-28 206.5 17.6 155 83-266 24-196 (198)
89 1zd9_A ADP-ribosylation factor 99.9 1.8E-24 6.2E-29 207.8 12.9 159 81-267 19-183 (188)
90 1m2o_B GTP-binding protein SAR 99.9 1.6E-23 5.6E-28 201.9 18.6 155 83-266 22-189 (190)
91 2h57_A ADP-ribosylation factor 99.9 1.3E-23 4.3E-28 201.9 17.7 160 81-268 18-186 (190)
92 1zj6_A ADP-ribosylation factor 99.9 1.3E-23 4.5E-28 201.3 17.6 158 82-268 14-177 (187)
93 2h17_A ADP-ribosylation factor 99.9 8.1E-24 2.8E-28 201.8 16.1 157 81-266 18-180 (181)
94 1ksh_A ARF-like protein 2; sma 99.9 2.6E-23 9E-28 198.7 19.0 158 83-269 17-180 (186)
95 2b6h_A ADP-ribosylation factor 99.9 6.6E-24 2.2E-28 205.0 13.6 159 80-267 25-189 (192)
96 2x77_A ADP-ribosylation factor 99.9 8.8E-24 3E-28 202.7 13.7 159 82-269 20-184 (189)
97 1oix_A RAS-related protein RAB 99.9 1.4E-22 4.9E-27 195.5 21.9 162 84-267 29-190 (191)
98 1fzq_A ADP-ribosylation factor 99.9 2E-23 6.7E-28 199.6 14.9 158 82-268 14-177 (181)
99 3llu_A RAS-related GTP-binding 99.9 8.6E-24 2.9E-28 204.6 12.5 161 80-267 16-195 (196)
100 1moz_A ARL1, ADP-ribosylation 99.9 8E-24 2.7E-28 201.3 11.8 160 82-270 16-181 (183)
101 2wkq_A NPH1-1, RAS-related C3 99.9 1E-22 3.4E-27 212.6 20.4 164 82-269 153-330 (332)
102 3th5_A RAS-related C3 botulinu 99.8 2.5E-25 8.4E-30 216.6 0.0 162 82-267 28-203 (204)
103 3c5h_A Glucocorticoid receptor 99.9 9.6E-24 3.3E-28 213.8 7.6 171 82-267 17-253 (255)
104 4dcu_A GTP-binding protein ENG 99.9 4.7E-24 1.6E-28 233.9 4.7 213 115-388 32-254 (456)
105 2wji_A Ferrous iron transport 99.9 8.8E-23 3E-27 191.9 11.4 144 115-267 12-163 (165)
106 2fh5_B SR-beta, signal recogni 99.9 3.6E-22 1.2E-26 195.4 11.4 159 83-266 6-213 (214)
107 3o47_A ADP-ribosylation factor 99.9 6E-22 2.1E-26 208.0 12.5 159 81-268 162-326 (329)
108 2lkc_A Translation initiation 99.9 2.6E-21 8.7E-26 182.9 14.7 158 82-270 6-172 (178)
109 2qu8_A Putative nucleolar GTP- 99.9 5.9E-21 2E-25 189.3 17.4 165 82-271 27-207 (228)
110 1svi_A GTP-binding protein YSX 99.9 2.9E-21 1E-25 185.6 14.2 155 82-267 21-193 (195)
111 3r7w_A Gtpase1, GTP-binding pr 99.9 3.1E-21 1.1E-25 200.6 15.4 157 84-267 3-179 (307)
112 3lvq_E ARF-GAP with SH3 domain 99.9 1.6E-21 5.5E-26 216.0 13.2 160 81-269 319-484 (497)
113 2wjg_A FEOB, ferrous iron tran 99.9 1.5E-21 5.3E-26 186.5 11.0 146 115-269 16-169 (188)
114 3r7w_B Gtpase2, GTP-binding pr 99.9 6.2E-22 2.1E-26 205.5 8.7 148 115-269 8-174 (331)
115 2gj8_A MNME, tRNA modification 99.8 3E-21 1E-25 183.1 11.1 153 84-268 4-165 (172)
116 2cxx_A Probable GTP-binding pr 99.8 3.8E-21 1.3E-25 183.6 11.3 147 115-270 10-185 (190)
117 3dpu_A RAB family protein; roc 99.8 3.7E-21 1.3E-25 215.0 9.8 163 81-269 38-208 (535)
118 2dyk_A GTP-binding protein; GT 99.8 1.3E-20 4.6E-25 174.7 11.0 142 115-267 10-160 (161)
119 3iev_A GTP-binding protein ERA 99.8 1.5E-20 5E-25 195.7 12.5 150 115-268 19-181 (308)
120 3pqc_A Probable GTP-binding pr 99.8 1.2E-19 4.3E-24 173.6 14.9 155 82-268 21-193 (195)
121 3a1s_A Iron(II) transport prot 99.8 1.1E-19 3.7E-24 184.3 15.0 155 83-268 4-166 (258)
122 3b1v_A Ferrous iron uptake tra 99.8 5.5E-20 1.9E-24 187.9 10.5 143 115-267 12-162 (272)
123 4dhe_A Probable GTP-binding pr 99.8 1E-19 3.5E-24 178.9 11.9 162 82-269 27-211 (223)
124 3iby_A Ferrous iron transport 99.8 9.3E-20 3.2E-24 184.6 9.9 143 115-266 10-164 (256)
125 3i8s_A Ferrous iron transport 99.8 2.5E-19 8.6E-24 183.3 9.3 144 115-267 12-167 (274)
126 1nrj_B SR-beta, signal recogni 99.8 9.9E-20 3.4E-24 178.5 6.0 142 83-255 11-170 (218)
127 3k53_A Ferrous iron transport 99.8 5.3E-19 1.8E-23 180.4 10.9 147 115-269 12-166 (271)
128 1wf3_A GTP-binding protein; GT 99.8 3.9E-19 1.3E-23 184.2 8.8 145 115-267 16-171 (301)
129 2hjg_A GTP-binding protein ENG 99.8 1.7E-18 5.9E-23 188.6 12.4 160 83-270 174-350 (436)
130 1u0l_A Probable GTPase ENGC; p 99.8 2.1E-19 7.3E-24 186.3 4.4 132 121-263 32-167 (301)
131 3gee_A MNME, tRNA modification 99.8 1.8E-18 6E-23 189.8 11.2 157 83-268 232-397 (476)
132 4dcu_A GTP-binding protein ENG 99.7 5.9E-18 2E-22 185.4 12.7 162 82-271 193-371 (456)
133 2e87_A Hypothetical protein PH 99.7 4E-17 1.4E-21 173.2 18.0 161 83-270 166-337 (357)
134 1lnz_A SPO0B-associated GTP-bi 99.7 1.3E-17 4.5E-22 175.5 10.5 147 115-268 167-329 (342)
135 3qq5_A Small GTP-binding prote 99.7 5.4E-18 1.9E-22 183.1 6.6 156 82-268 32-195 (423)
136 1ega_A Protein (GTP-binding pr 99.7 1.2E-17 4E-22 173.1 8.4 154 108-267 10-173 (301)
137 1xzp_A Probable tRNA modificat 99.7 1.7E-17 5.9E-22 182.1 8.7 153 84-269 243-405 (482)
138 3sjy_A Translation initiation 99.7 9.1E-16 3.1E-20 165.4 18.5 158 82-267 6-190 (403)
139 3geh_A MNME, tRNA modification 99.7 5.8E-17 2E-21 177.1 8.9 153 83-269 223-384 (462)
140 1s0u_A EIF-2-gamma, translatio 99.7 7.7E-16 2.6E-20 166.2 17.5 157 83-267 7-196 (408)
141 1mky_A Probable GTP-binding pr 99.7 2.8E-16 9.5E-21 171.3 14.1 159 83-270 179-356 (439)
142 2qtf_A Protein HFLX, GTP-bindi 99.7 5.8E-16 2E-20 164.4 16.1 153 115-270 188-355 (364)
143 3lxx_A GTPase IMAP family memb 99.7 1.1E-16 3.9E-21 159.7 9.8 161 82-268 27-213 (239)
144 3lxw_A GTPase IMAP family memb 99.7 2.8E-16 9.4E-21 158.1 12.3 165 81-269 18-208 (247)
145 3t5d_A Septin-7; GTP-binding p 99.7 9.8E-17 3.4E-21 163.8 8.6 158 83-267 7-202 (274)
146 2xtp_A GTPase IMAP family memb 99.6 6.5E-16 2.2E-20 156.1 13.1 161 83-269 21-208 (260)
147 3j2k_7 ERF3, eukaryotic polype 99.6 4.7E-16 1.6E-20 169.4 12.9 155 82-261 15-217 (439)
148 2ged_A SR-beta, signal recogni 99.6 3.7E-16 1.3E-20 149.7 10.7 115 83-228 47-173 (193)
149 3p26_A Elongation factor 1 alp 99.6 4.6E-16 1.6E-20 171.5 12.3 154 82-259 31-228 (483)
150 3cb4_D GTP-binding protein LEP 99.6 9.8E-16 3.3E-20 172.1 14.8 147 115-267 13-180 (599)
151 2qag_A Septin-2, protein NEDD5 99.6 1.2E-16 4.1E-21 169.7 6.4 151 115-270 46-234 (361)
152 1wb1_A Translation elongation 99.6 1E-15 3.5E-20 168.6 13.8 155 83-268 18-188 (482)
153 1kk1_A EIF2gamma; initiation o 99.6 2.4E-15 8E-20 162.5 16.1 147 115-267 19-198 (410)
154 2ywe_A GTP-binding protein LEP 99.6 1.4E-15 4.8E-20 170.5 14.3 147 115-267 15-182 (600)
155 3izy_P Translation initiation 99.6 3.1E-17 1.1E-21 181.6 -1.5 148 115-267 13-166 (537)
156 1pui_A ENGB, probable GTP-bind 99.6 2.4E-15 8.2E-20 146.1 11.4 155 82-267 24-197 (210)
157 4fid_A G protein alpha subunit 99.6 1.9E-15 6.6E-20 158.1 11.0 129 137-269 147-328 (340)
158 2c78_A Elongation factor TU-A; 99.6 6E-16 2.1E-20 166.9 6.9 147 83-255 10-180 (405)
159 2elf_A Protein translation elo 99.6 1.9E-15 6.6E-20 160.8 10.5 140 115-270 30-181 (370)
160 1zun_B Sulfate adenylate trans 99.6 3.1E-15 1.1E-19 162.7 12.3 154 84-262 24-217 (434)
161 1jny_A EF-1-alpha, elongation 99.6 1.9E-16 6.6E-21 172.3 2.2 156 83-261 5-205 (435)
162 2aka_B Dynamin-1; fusion prote 99.6 6.5E-16 2.2E-20 158.9 5.7 110 155-267 125-251 (299)
163 1d2e_A Elongation factor TU (E 99.6 1.6E-15 5.5E-20 163.1 8.7 149 115-267 12-193 (397)
164 3tr5_A RF-3, peptide chain rel 99.6 2E-15 6.7E-20 167.7 9.4 117 83-225 12-148 (528)
165 1g7s_A Translation initiation 99.6 6.2E-15 2.1E-19 165.7 12.8 148 115-269 14-218 (594)
166 1cip_A Protein (guanine nucleo 99.6 6.4E-15 2.2E-19 155.5 11.6 132 135-270 177-345 (353)
167 3izq_1 HBS1P, elongation facto 99.6 8.8E-16 3E-20 173.4 4.7 151 108-260 169-363 (611)
168 1r5b_A Eukaryotic peptide chai 99.5 2.6E-15 8.9E-20 164.7 5.5 107 154-260 120-243 (467)
169 2yv5_A YJEQ protein; hydrolase 99.5 9.4E-15 3.2E-19 151.3 8.1 96 165-263 66-163 (302)
170 3avx_A Elongation factor TS, e 99.5 8.8E-15 3E-19 171.6 8.0 149 115-267 305-484 (1289)
171 3ohm_A Guanine nucleotide-bind 99.5 2.4E-14 8.4E-19 149.1 10.5 144 123-270 132-319 (327)
172 3def_A T7I23.11 protein; chlor 99.5 4.1E-14 1.4E-18 143.4 11.7 124 83-232 35-172 (262)
173 1zcb_A G alpha I/13; GTP-bindi 99.5 3.3E-14 1.1E-18 150.6 11.2 153 115-271 156-355 (362)
174 1azs_C GS-alpha; complex (lyas 99.5 4.7E-14 1.6E-18 150.7 11.9 131 137-271 203-387 (402)
175 1f60_A Elongation factor EEF1A 99.5 1.1E-15 3.8E-20 167.3 -0.9 107 151-260 81-203 (458)
176 1zo1_I IF2, translation initia 99.5 1.7E-15 5.9E-20 166.4 0.3 142 115-265 13-163 (501)
177 2qnr_A Septin-2, protein NEDD5 99.5 8.7E-15 3E-19 151.5 5.0 159 84-269 18-214 (301)
178 1udx_A The GTP-binding protein 99.5 9.9E-14 3.4E-18 149.3 12.8 157 107-269 158-325 (416)
179 3mca_A HBS1, elongation factor 99.5 3.6E-15 1.2E-19 168.0 1.4 151 82-257 175-371 (592)
180 2xtz_A Guanine nucleotide-bind 99.5 6.2E-14 2.1E-18 148.0 10.6 119 153-271 181-347 (354)
181 2dy1_A Elongation factor G; tr 99.5 1.5E-13 5.1E-18 157.0 13.8 106 115-224 18-139 (665)
182 3t34_A Dynamin-related protein 99.5 4E-14 1.4E-18 150.1 8.5 108 156-265 137-257 (360)
183 1h65_A Chloroplast outer envel 99.5 1.3E-13 4.5E-18 140.2 11.8 124 84-231 39-174 (270)
184 2j69_A Bacterial dynamin-like 99.4 2.4E-13 8.1E-18 155.9 12.4 110 156-268 175-324 (695)
185 1jwy_B Dynamin A GTPase domain 99.4 3E-13 1E-17 140.2 11.7 112 155-269 131-262 (315)
186 2qag_C Septin-7; cell cycle, c 99.4 1.2E-13 4E-18 148.8 8.6 157 84-266 31-224 (418)
187 2h5e_A Peptide chain release f 99.4 5.8E-13 2E-17 147.9 13.9 117 83-225 12-148 (529)
188 1wxq_A GTP-binding protein; st 99.4 1.5E-13 5E-18 147.5 6.2 77 115-191 9-114 (397)
189 1dar_A EF-G, elongation factor 99.4 1.4E-12 4.6E-17 149.6 13.9 113 83-225 11-143 (691)
190 2hf9_A Probable hydrogenase ni 99.3 2.5E-14 8.6E-19 140.8 -4.2 57 212-268 165-223 (226)
191 2xex_A Elongation factor G; GT 99.3 3.5E-12 1.2E-16 146.2 12.7 117 83-225 9-141 (693)
192 2x2e_A Dynamin-1; nitration, h 99.3 1.9E-13 6.6E-18 144.5 1.8 109 155-266 130-255 (353)
193 2rdo_7 EF-G, elongation factor 99.3 1.3E-11 4.4E-16 141.7 16.7 116 84-225 10-148 (704)
194 2wsm_A Hydrogenase expression/ 99.3 1.7E-12 5.7E-17 127.2 7.4 104 155-269 109-214 (221)
195 1jal_A YCHF protein; nucleotid 99.3 2.4E-11 8.2E-16 128.2 15.5 136 115-252 11-240 (363)
196 1puj_A YLQF, conserved hypothe 99.3 3.1E-12 1.1E-16 131.1 7.2 170 159-388 3-176 (282)
197 3p32_A Probable GTPase RV1496/ 99.2 7.3E-12 2.5E-16 132.5 5.5 105 154-269 171-284 (355)
198 2www_A Methylmalonic aciduria 99.2 4E-12 1.4E-16 134.2 2.1 103 155-269 167-279 (349)
199 3h2y_A GTPase family protein; 99.2 3.8E-11 1.3E-15 127.6 8.7 96 164-266 55-157 (368)
200 2qpt_A EH domain-containing pr 99.1 1.3E-10 4.3E-15 129.8 11.8 70 156-228 155-235 (550)
201 1n0u_A EF-2, elongation factor 99.1 1.1E-10 3.7E-15 136.6 10.9 115 84-224 19-163 (842)
202 1yrb_A ATP(GTP)binding protein 99.1 1.4E-10 4.8E-15 116.5 9.6 109 155-268 109-256 (262)
203 3ec1_A YQEH GTPase; atnos1, at 99.1 3.8E-11 1.3E-15 127.7 5.6 122 164-353 57-185 (369)
204 2dby_A GTP-binding protein; GD 99.1 9.4E-11 3.2E-15 124.2 8.4 51 212-262 202-255 (368)
205 2p67_A LAO/AO transport system 99.1 8.9E-11 3E-15 123.5 5.8 104 154-268 148-260 (341)
206 3zvr_A Dynamin-1; hydrolase, D 99.0 4.1E-10 1.4E-14 128.7 9.7 108 156-266 151-275 (772)
207 3vqt_A RF-3, peptide chain rel 99.0 1.1E-09 3.7E-14 122.1 12.0 106 115-224 40-165 (548)
208 4a9a_A Ribosome-interacting GT 98.9 6.2E-09 2.1E-13 110.3 14.5 144 115-261 81-240 (376)
209 2qm8_A GTPase/ATPase; G protei 98.9 8.6E-10 2.9E-14 115.7 7.6 104 154-268 147-260 (337)
210 3cnl_A YLQF, putative uncharac 98.9 1.3E-10 4.4E-15 117.7 0.7 89 162-263 4-95 (262)
211 1t9h_A YLOQ, probable GTPase E 98.8 3.9E-10 1.3E-14 116.4 0.3 93 166-261 74-169 (307)
212 3j25_A Tetracycline resistance 98.7 2.2E-09 7.6E-14 121.9 2.5 109 112-224 8-132 (638)
213 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 9.8E-08 3.3E-12 101.7 13.9 76 115-190 29-127 (392)
214 3l82_B F-box only protein 4; T 98.7 1.3E-08 4.5E-13 98.2 5.8 104 162-268 109-222 (227)
215 2ohf_A Protein OLA1, GTP-bindi 98.7 1.5E-08 5.1E-13 107.9 5.7 79 115-193 31-131 (396)
216 4fn5_A EF-G 1, elongation fact 98.6 2.6E-07 8.9E-12 106.2 15.3 106 115-224 22-150 (709)
217 2rcn_A Probable GTPase ENGC; Y 98.6 3.3E-08 1.1E-12 104.0 6.6 85 174-262 126-212 (358)
218 3l2o_B F-box only protein 4; s 98.5 2.1E-07 7.1E-12 94.1 8.0 105 162-268 194-307 (312)
219 4dkx_A RAS-related protein RAB 98.4 7.7E-08 2.6E-12 94.3 2.6 59 326-384 9-67 (216)
220 3ec1_A YQEH GTPase; atnos1, at 98.3 1.6E-07 5.5E-12 99.6 1.0 139 107-253 163-315 (369)
221 3h2y_A GTPase family protein; 98.2 6E-08 2.1E-12 102.8 -3.6 135 107-249 161-310 (368)
222 2qag_B Septin-6, protein NEDD5 98.2 2.4E-06 8.1E-11 91.7 8.7 131 115-250 51-217 (427)
223 2j37_W Signal recognition part 98.2 7.5E-07 2.6E-11 97.8 4.1 102 154-266 183-310 (504)
224 1tq4_A IIGP1, interferon-induc 98.1 1.1E-05 3.8E-10 86.5 10.4 148 115-269 78-253 (413)
225 3sop_A Neuronal-specific septi 97.7 3.8E-05 1.3E-09 77.7 7.3 64 178-246 111-177 (270)
226 1puj_A YLQF, conserved hypothe 97.7 2.7E-05 9.3E-10 79.3 5.5 59 82-166 118-176 (282)
227 3cnl_A YLQF, putative uncharac 97.6 2.1E-05 7.4E-10 79.2 2.6 49 115-167 108-156 (262)
228 1z0f_A RAB14, member RAS oncog 97.5 4.7E-05 1.6E-09 70.4 4.0 46 339-384 24-69 (179)
229 2ew1_A RAS-related protein RAB 97.5 8.1E-05 2.8E-09 71.4 5.0 54 331-384 27-80 (201)
230 3dm5_A SRP54, signal recogniti 97.5 0.00019 6.4E-09 77.4 8.0 93 155-259 183-281 (443)
231 2y8e_A RAB-protein 6, GH09086P 97.4 9.6E-05 3.3E-09 68.2 4.8 55 330-384 14-68 (179)
232 2hxs_A RAB-26, RAS-related pro 97.4 5E-05 1.7E-09 70.3 2.8 56 329-384 5-61 (178)
233 3c5c_A RAS-like protein 12; GD 97.4 8E-05 2.7E-09 70.3 4.1 51 333-384 24-74 (187)
234 1z08_A RAS-related protein RAB 97.4 7.2E-05 2.5E-09 68.6 3.4 54 330-383 6-59 (170)
235 2fu5_C RAS-related protein RAB 97.4 8.4E-05 2.9E-09 69.3 3.8 54 331-384 9-62 (183)
236 2hup_A RAS-related protein RAB 97.4 8.3E-05 2.8E-09 71.1 3.8 54 331-384 30-83 (201)
237 1oix_A RAS-related protein RAB 97.4 0.00014 4.7E-09 69.0 5.3 54 331-384 30-83 (191)
238 3l0i_B RAS-related protein RAB 97.4 8.7E-05 3E-09 70.6 3.9 54 331-384 34-87 (199)
239 2iwr_A Centaurin gamma 1; ANK 97.4 0.00012 4.1E-09 67.9 4.6 53 330-384 7-59 (178)
240 2a5j_A RAS-related protein RAB 97.4 0.00011 3.7E-09 69.3 4.3 51 334-384 25-75 (191)
241 1ek0_A Protein (GTP-binding pr 97.3 0.00014 4.9E-09 66.3 4.6 55 330-384 3-57 (170)
242 1wms_A RAB-9, RAB9, RAS-relate 97.3 0.00013 4.6E-09 67.3 4.4 54 331-384 8-61 (177)
243 1r2q_A RAS-related protein RAB 97.3 0.00015 5.1E-09 66.2 4.4 55 330-384 6-60 (170)
244 3cbq_A GTP-binding protein REM 97.3 0.00013 4.6E-09 69.4 4.2 53 332-384 25-77 (195)
245 2v3c_C SRP54, signal recogniti 97.3 8E-05 2.7E-09 80.4 2.8 91 154-257 180-278 (432)
246 2il1_A RAB12; G-protein, GDP, 97.3 0.00014 4.8E-09 68.8 3.9 46 339-384 35-80 (192)
247 1z2a_A RAS-related protein RAB 97.3 0.00018 6.3E-09 65.6 4.4 54 331-384 6-59 (168)
248 2vxe_A CG10686-PA; EDC3, CAR-1 97.3 0.0017 5.7E-08 53.0 9.3 70 457-526 9-83 (88)
249 3ihw_A Centg3; RAS, centaurin, 97.3 0.00016 5.5E-09 68.1 4.0 52 331-384 21-72 (184)
250 3kl4_A SRP54, signal recogniti 97.3 0.00015 5.1E-09 78.1 4.2 92 154-257 179-278 (433)
251 1z06_A RAS-related protein RAB 97.2 0.0002 6.7E-09 67.4 4.6 53 332-384 22-74 (189)
252 2efe_B Small GTP-binding prote 97.2 0.00016 5.5E-09 67.0 3.7 54 331-384 13-66 (181)
253 2gf9_A RAS-related protein RAB 97.2 0.00024 8.2E-09 66.8 4.8 48 337-384 29-76 (189)
254 2f9l_A RAB11B, member RAS onco 97.2 0.00022 7.4E-09 67.9 4.3 54 331-384 6-59 (199)
255 2fb7_A SM-like protein, LSM-14 97.2 0.0014 4.8E-08 54.1 8.4 71 456-526 14-89 (95)
256 1z0j_A RAB-22, RAS-related pro 97.2 0.00028 9.4E-09 64.5 4.8 55 330-384 6-60 (170)
257 2bme_A RAB4A, RAS-related prot 97.2 0.00032 1.1E-08 65.4 5.3 54 331-384 11-64 (186)
258 2bcg_Y Protein YP2, GTP-bindin 97.2 0.00025 8.5E-09 67.6 4.6 54 331-384 9-62 (206)
259 1x3s_A RAS-related protein RAB 97.2 0.00025 8.7E-09 66.5 4.4 49 336-384 21-69 (195)
260 3tw8_B RAS-related protein RAB 97.1 0.00035 1.2E-08 64.5 5.0 52 332-383 11-62 (181)
261 2oil_A CATX-8, RAS-related pro 97.1 0.00029 1E-08 66.3 4.5 52 333-384 28-79 (193)
262 3q3j_B RHO-related GTP-binding 97.1 0.00022 7.6E-09 68.9 3.5 52 332-384 29-80 (214)
263 1zbd_A Rabphilin-3A; G protein 97.1 0.00038 1.3E-08 66.1 5.0 54 331-384 9-62 (203)
264 3tkl_A RAS-related protein RAB 97.1 0.00039 1.3E-08 65.4 4.8 48 337-384 23-70 (196)
265 1g16_A RAS-related protein SEC 97.1 0.00021 7E-09 65.4 2.8 54 331-384 4-57 (170)
266 3kkq_A RAS-related protein M-R 97.1 0.00032 1.1E-08 65.3 4.1 51 333-384 21-71 (183)
267 2cjw_A GTP-binding protein GEM 97.1 0.00027 9.4E-09 67.0 3.6 54 331-385 7-62 (192)
268 2g3y_A GTP-binding protein GEM 97.1 0.00025 8.6E-09 68.8 3.3 53 332-385 39-93 (211)
269 3cpj_B GTP-binding protein YPT 97.1 0.0003 1E-08 68.2 3.8 52 333-384 16-67 (223)
270 2q3h_A RAS homolog gene family 97.1 0.0003 1E-08 66.7 3.7 51 333-384 23-73 (201)
271 2g6b_A RAS-related protein RAB 97.0 0.00047 1.6E-08 63.7 4.9 53 332-384 12-65 (180)
272 2p5s_A RAS and EF-hand domain 97.0 0.00025 8.7E-09 67.3 3.1 48 337-384 35-82 (199)
273 3reg_A RHO-like small GTPase; 97.0 0.0004 1.4E-08 65.5 4.5 53 331-384 24-76 (194)
274 1m7b_A RND3/RHOE small GTP-bin 97.0 0.00033 1.1E-08 65.6 3.8 53 331-384 8-60 (184)
275 2gco_A H9, RHO-related GTP-bin 97.0 0.00036 1.2E-08 66.4 4.1 51 333-384 28-78 (201)
276 3t5g_A GTP-binding protein RHE 97.0 0.00047 1.6E-08 64.0 4.8 53 331-384 7-59 (181)
277 2o52_A RAS-related protein RAB 97.0 0.00034 1.2E-08 66.6 3.8 52 333-384 28-79 (200)
278 1vg8_A RAS-related protein RAB 97.0 0.00035 1.2E-08 66.4 3.7 54 331-384 9-62 (207)
279 3cph_A RAS-related protein SEC 97.0 0.00046 1.6E-08 65.9 4.5 48 337-384 27-74 (213)
280 2fn4_A P23, RAS-related protei 97.0 0.00054 1.8E-08 63.2 4.8 52 332-384 11-62 (181)
281 1gwn_A RHO-related GTP-binding 97.0 0.00027 9.3E-09 67.9 2.7 53 331-384 29-81 (205)
282 2zej_A Dardarin, leucine-rich 97.0 0.00021 7.3E-09 67.0 1.9 53 331-383 3-60 (184)
283 3clv_A RAB5 protein, putative; 97.0 0.00042 1.5E-08 65.1 3.9 49 331-379 8-56 (208)
284 2fg5_A RAB-22B, RAS-related pr 97.0 0.00031 1.1E-08 66.3 3.0 53 331-383 24-76 (192)
285 2yc2_C IFT27, small RAB-relate 96.9 0.00027 9.3E-09 67.0 2.4 53 332-384 22-78 (208)
286 3gj0_A GTP-binding nuclear pro 96.9 0.00044 1.5E-08 66.8 3.8 54 331-384 16-69 (221)
287 2j0v_A RAC-like GTP-binding pr 96.9 0.00043 1.5E-08 66.3 3.5 53 331-384 10-62 (212)
288 1c1y_A RAS-related protein RAP 96.9 0.00045 1.5E-08 62.9 3.4 53 331-384 4-56 (167)
289 2atv_A RERG, RAS-like estrogen 96.9 0.00071 2.4E-08 63.9 4.9 53 331-384 29-81 (196)
290 1kao_A RAP2A; GTP-binding prot 96.9 0.00072 2.5E-08 61.2 4.7 53 331-384 4-56 (167)
291 1mh1_A RAC1; GTP-binding, GTPa 96.9 0.0007 2.4E-08 62.8 4.5 53 331-384 6-58 (186)
292 2f7s_A C25KG, RAS-related prot 96.9 0.00044 1.5E-08 66.4 3.0 46 332-377 27-72 (217)
293 3bc1_A RAS-related protein RAB 96.8 0.00065 2.2E-08 63.3 4.0 46 332-377 13-59 (195)
294 2j1l_A RHO-related GTP-binding 96.8 0.00073 2.5E-08 65.1 4.4 52 332-384 36-87 (214)
295 2atx_A Small GTP binding prote 96.8 0.00052 1.8E-08 64.6 3.3 52 332-384 20-71 (194)
296 2nzj_A GTP-binding protein REM 96.8 0.00076 2.6E-08 61.9 4.1 53 331-384 5-57 (175)
297 3dz8_A RAS-related protein RAB 96.8 0.0003 1E-08 66.3 1.1 53 332-384 25-77 (191)
298 2a9k_A RAS-related protein RAL 96.8 0.001 3.4E-08 61.7 4.6 53 331-384 19-71 (187)
299 1u8z_A RAS-related protein RAL 96.8 0.001 3.6E-08 60.2 4.6 53 331-384 5-57 (168)
300 1f5n_A Interferon-induced guan 96.7 0.0014 4.7E-08 73.2 6.3 53 115-167 47-103 (592)
301 1ky3_A GTP-binding protein YPT 96.7 0.00041 1.4E-08 64.1 1.7 53 331-383 9-62 (182)
302 3q85_A GTP-binding protein REM 96.7 0.00081 2.8E-08 61.4 3.8 54 331-384 3-56 (169)
303 2erx_A GTP-binding protein DI- 96.7 0.0013 4.5E-08 59.9 4.9 53 331-384 4-56 (172)
304 1d3b_A Protein (small nuclear 96.7 0.008 2.7E-07 48.2 8.7 71 451-526 5-75 (75)
305 2gf0_A GTP-binding protein DI- 96.7 0.0015 5.2E-08 61.4 5.2 53 331-384 9-61 (199)
306 2bov_A RAla, RAS-related prote 96.7 0.0013 4.5E-08 62.2 4.8 52 332-384 16-67 (206)
307 3oes_A GTPase rhebl1; small GT 96.7 0.00071 2.4E-08 64.3 2.9 52 332-384 26-77 (201)
308 2wjg_A FEOB, ferrous iron tran 96.7 0.0013 4.5E-08 61.3 4.7 60 327-386 4-63 (188)
309 2fv8_A H6, RHO-related GTP-bin 96.6 0.0011 3.7E-08 63.3 4.0 53 331-384 26-78 (207)
310 2ce2_X GTPase HRAS; signaling 96.6 0.0016 5.5E-08 58.7 4.8 52 331-383 4-55 (166)
311 4gzl_A RAS-related C3 botulinu 96.5 0.0012 4.3E-08 62.9 3.7 52 331-383 31-82 (204)
312 3e70_C DPA, signal recognition 96.5 0.0026 8.9E-08 66.0 6.3 92 156-259 213-310 (328)
313 4dsu_A GTPase KRAS, isoform 2B 96.5 0.0016 5.5E-08 60.5 4.4 53 331-384 5-57 (189)
314 2wji_A Ferrous iron transport 96.5 0.0014 4.9E-08 60.1 3.9 56 331-386 4-59 (165)
315 1j8m_F SRP54, signal recogniti 96.5 0.0027 9.4E-08 64.8 6.2 93 154-259 180-281 (297)
316 3con_A GTPase NRAS; structural 96.5 0.0018 6.2E-08 60.5 4.5 52 332-384 23-74 (190)
317 2h57_A ADP-ribosylation factor 96.5 0.0017 5.8E-08 60.9 4.1 54 331-386 22-76 (190)
318 4bas_A ADP-ribosylation factor 96.5 0.002 6.8E-08 60.6 4.4 48 338-387 25-73 (199)
319 2lkc_A Translation initiation 96.4 0.0011 3.8E-08 61.0 2.6 56 331-386 9-64 (178)
320 1y96_A Gemin6, SIP2, GEM-assoc 96.4 0.012 4.2E-07 48.0 8.2 61 455-526 11-72 (86)
321 1zd9_A ADP-ribosylation factor 96.4 0.0021 7.3E-08 60.2 4.1 49 336-386 28-76 (188)
322 3szr_A Interferon-induced GTP- 96.4 0.0048 1.6E-07 69.4 7.5 23 108-130 47-69 (608)
323 3bwd_D RAC-like GTP-binding pr 96.4 0.00037 1.3E-08 64.6 -1.3 53 331-384 9-61 (182)
324 1i4k_A Putative snRNP SM-like 96.3 0.011 3.9E-07 47.4 7.5 69 453-526 6-74 (77)
325 2y9a_D Small nuclear ribonucle 96.2 0.019 6.5E-07 50.7 9.0 69 453-526 7-75 (126)
326 1th7_A SnRNP-2, small nuclear 96.2 0.019 6.7E-07 46.6 8.4 71 451-526 9-79 (81)
327 3t1o_A Gliding protein MGLA; G 96.2 0.00054 1.9E-08 64.2 -1.1 53 331-384 15-79 (198)
328 1h64_1 SnRNP SM-like protein; 96.2 0.014 4.9E-07 46.6 7.5 70 452-526 5-74 (75)
329 3c5h_A Glucocorticoid receptor 96.2 0.00035 1.2E-08 69.7 -2.8 56 330-385 19-101 (255)
330 1b34_A Protein (small nuclear 96.1 0.026 8.8E-07 49.4 9.1 71 452-527 3-73 (119)
331 3th5_A RAS-related C3 botulinu 95.0 0.001 3.5E-08 63.2 0.0 46 337-383 37-82 (204)
332 2gj8_A MNME, tRNA modification 96.0 0.0053 1.8E-07 56.8 4.9 57 331-387 5-62 (172)
333 4djt_A GTP-binding nuclear pro 96.0 0.0033 1.1E-07 60.2 3.6 53 331-383 12-65 (218)
334 3s6n_G Small nuclear ribonucle 96.0 0.024 8.4E-07 45.4 8.1 67 455-526 8-74 (76)
335 1ksh_A ARF-like protein 2; sma 96.0 0.0069 2.4E-07 56.2 5.4 54 331-387 19-72 (186)
336 1bif_A 6-phosphofructo-2-kinas 96.0 0.00043 1.5E-08 75.5 -3.5 103 115-222 48-160 (469)
337 3q72_A GTP-binding protein RAD 95.9 0.0055 1.9E-07 55.5 4.3 52 331-384 3-54 (166)
338 2wkq_A NPH1-1, RAS-related C3 95.9 0.0058 2E-07 62.4 4.9 48 336-384 161-208 (332)
339 2h17_A ADP-ribosylation factor 95.9 0.0026 8.8E-08 59.1 2.0 53 332-387 23-75 (181)
340 1moz_A ARL1, ADP-ribosylation 95.9 0.0055 1.9E-07 56.6 4.2 54 331-387 19-72 (183)
341 1zj6_A ADP-ribosylation factor 95.8 0.0041 1.4E-07 58.0 2.8 54 331-387 17-70 (187)
342 1r8s_A ADP-ribosylation factor 95.7 0.004 1.4E-07 56.3 2.6 53 332-387 2-54 (164)
343 3s6n_F Small nuclear ribonucle 95.7 0.031 1.1E-06 46.0 7.6 70 453-527 8-77 (86)
344 2x77_A ADP-ribosylation factor 95.7 0.0076 2.6E-07 56.2 4.5 53 331-386 23-75 (189)
345 1i8f_A Putative snRNP SM-like 95.7 0.032 1.1E-06 45.3 7.6 70 451-526 11-80 (81)
346 4emh_A Probable U6 snRNA-assoc 95.7 0.03 1E-06 47.8 7.6 73 452-528 17-89 (105)
347 3lxx_A GTPase IMAP family memb 95.6 0.0064 2.2E-07 59.5 3.7 53 336-388 35-89 (239)
348 1ljo_A Archaeal SM-like protei 95.6 0.04 1.4E-06 44.2 7.8 69 453-526 7-76 (77)
349 2b6h_A ADP-ribosylation factor 95.6 0.0066 2.3E-07 57.2 3.6 54 331-387 30-83 (192)
350 3q5d_A Atlastin-1; G protein, 95.6 0.0057 2E-07 65.9 3.4 24 105-128 66-89 (447)
351 1upt_A ARL1, ADP-ribosylation 95.5 0.013 4.3E-07 53.3 5.1 54 331-387 8-61 (171)
352 1f6b_A SAR1; gtpases, N-termin 95.4 0.0097 3.3E-07 56.3 4.1 53 331-386 26-78 (198)
353 1fzq_A ADP-ribosylation factor 95.4 0.01 3.5E-07 55.2 4.1 53 331-386 17-69 (181)
354 4emk_B U6 snRNA-associated SM- 95.3 0.04 1.4E-06 44.0 6.8 67 453-524 6-72 (75)
355 3bw1_A SMX4 protein, U6 snRNA- 95.3 0.044 1.5E-06 46.0 7.3 76 452-527 11-88 (96)
356 1d3b_B Protein (small nuclear 95.3 0.028 9.6E-07 46.7 6.0 71 456-526 9-84 (91)
357 1m2o_B GTP-binding protein SAR 95.3 0.014 4.6E-07 54.9 4.5 52 332-386 25-76 (190)
358 3cwq_A Para family chromosome 95.3 0.074 2.5E-06 50.9 9.9 86 154-246 67-153 (209)
359 1mgq_A SM-like protein; LSM, R 95.2 0.05 1.7E-06 44.4 7.1 67 452-523 16-82 (83)
360 3i8s_A Ferrous iron transport 95.1 0.011 3.6E-07 59.6 3.4 58 331-388 4-61 (274)
361 3iby_A Ferrous iron transport 95.1 0.013 4.6E-07 58.3 4.1 56 333-388 4-59 (256)
362 3lxw_A GTPase IMAP family memb 95.1 0.011 3.9E-07 58.3 3.4 59 313-387 20-80 (247)
363 1n9r_A SMF, small nuclear ribo 95.0 0.05 1.7E-06 45.4 6.7 69 452-525 22-91 (93)
364 1m5q_A SMAP3, small nuclear ri 95.0 0.09 3.1E-06 46.6 8.7 67 453-528 2-68 (130)
365 3k53_A Ferrous iron transport 95.0 0.017 5.7E-07 57.9 4.4 57 331-387 4-60 (271)
366 2fh5_B SR-beta, signal recogni 94.9 0.014 4.7E-07 55.7 3.5 51 330-383 7-58 (214)
367 2qu8_A Putative nucleolar GTP- 94.9 0.017 5.7E-07 55.9 4.1 51 337-387 36-86 (228)
368 2dyk_A GTP-binding protein; GT 94.8 0.015 5E-07 52.3 3.3 56 332-387 3-59 (161)
369 2xtp_A GTPase IMAP family memb 94.8 0.02 7E-07 56.6 4.5 50 338-387 30-81 (260)
370 3t5d_A Septin-7; GTP-binding p 94.8 0.01 3.5E-07 59.5 2.3 57 331-387 9-75 (274)
371 3r7w_B Gtpase2, GTP-binding pr 94.7 0.0071 2.4E-07 62.5 0.7 47 332-383 1-50 (331)
372 3a1s_A Iron(II) transport prot 94.5 0.023 7.9E-07 56.6 4.1 57 331-387 6-62 (258)
373 4emk_A U6 snRNA-associated SM- 94.3 0.2 7E-06 41.7 8.8 68 453-524 22-89 (94)
374 4emk_C U6 snRNA-associated SM- 94.2 0.16 5.6E-06 43.8 8.2 77 451-527 23-101 (113)
375 2px0_A Flagellar biosynthesis 94.2 0.055 1.9E-06 55.1 6.0 91 154-256 182-278 (296)
376 3pgw_B SM B; protein-RNA compl 94.0 0.15 5E-06 49.3 8.2 72 455-526 8-84 (231)
377 3o47_A ADP-ribosylation factor 93.9 0.035 1.2E-06 57.3 4.2 51 333-386 168-218 (329)
378 3llu_A RAS-related GTP-binding 93.7 0.0064 2.2E-07 57.3 -1.9 49 332-383 22-73 (196)
379 4a53_A EDC3; RNA binding prote 93.6 0.54 1.9E-05 40.6 10.2 58 456-529 7-66 (125)
380 1kgd_A CASK, peripheral plasma 93.6 0.022 7.6E-07 53.1 1.8 22 108-129 7-28 (180)
381 4emg_A Probable U6 snRNA-assoc 93.4 0.23 7.9E-06 41.3 7.5 72 453-524 11-90 (93)
382 3r7w_A Gtpase1, GTP-binding pr 93.3 0.051 1.8E-06 55.4 4.0 55 331-387 4-62 (307)
383 1svi_A GTP-binding protein YSX 93.1 0.039 1.3E-06 51.3 2.5 54 332-386 25-78 (195)
384 2xxa_A Signal recognition part 92.9 0.2 6.7E-06 53.8 8.0 84 154-248 183-273 (433)
385 3gee_A MNME, tRNA modification 92.8 0.04 1.4E-06 60.0 2.5 59 331-389 234-293 (476)
386 3ney_A 55 kDa erythrocyte memb 92.8 0.037 1.3E-06 52.9 1.8 19 111-129 24-42 (197)
387 1wf3_A GTP-binding protein; GT 92.7 0.089 3.1E-06 53.6 4.8 57 332-388 9-66 (301)
388 1lvg_A Guanylate kinase, GMP k 92.7 0.035 1.2E-06 52.7 1.6 20 109-128 7-26 (198)
389 1pui_A ENGB, probable GTP-bind 92.7 0.052 1.8E-06 51.3 2.8 46 331-376 27-72 (210)
390 1xzp_A Probable tRNA modificat 92.6 0.042 1.4E-06 59.9 2.4 57 332-388 245-302 (482)
391 2cxx_A Probable GTP-binding pr 92.6 0.042 1.4E-06 50.7 2.0 36 332-367 3-38 (190)
392 3tr0_A Guanylate kinase, GMP k 92.5 0.041 1.4E-06 51.9 1.8 23 107-129 8-30 (205)
393 3def_A T7I23.11 protein; chlor 92.4 0.11 3.7E-06 51.6 4.9 57 332-389 38-96 (262)
394 3lvq_E ARF-GAP with SH3 domain 92.4 0.054 1.8E-06 59.0 2.9 53 331-386 323-375 (497)
395 3dpu_A RAB family protein; roc 92.4 0.022 7.7E-07 62.9 -0.3 31 340-370 51-81 (535)
396 1z6g_A Guanylate kinase; struc 92.0 0.052 1.8E-06 52.4 1.9 22 108-129 25-46 (218)
397 1ye8_A Protein THEP1, hypothet 91.9 0.085 2.9E-06 49.3 3.2 17 113-129 7-23 (178)
398 1znw_A Guanylate kinase, GMP k 91.9 0.053 1.8E-06 51.7 1.7 20 110-129 24-43 (207)
399 3iev_A GTP-binding protein ERA 91.7 0.13 4.6E-06 52.4 4.7 58 331-388 11-70 (308)
400 2rcn_A Probable GTPase ENGC; Y 91.6 0.054 1.9E-06 56.6 1.7 23 108-130 217-239 (358)
401 2qag_A Septin-2, protein NEDD5 91.6 0.079 2.7E-06 55.4 2.9 54 331-384 38-100 (361)
402 1zp6_A Hypothetical protein AT 91.6 0.053 1.8E-06 50.6 1.4 17 113-129 16-32 (191)
403 1s96_A Guanylate kinase, GMP k 91.6 0.058 2E-06 52.3 1.7 21 109-129 19-39 (219)
404 3a00_A Guanylate kinase, GMP k 91.4 0.059 2E-06 50.5 1.5 21 109-129 4-24 (186)
405 4gp7_A Metallophosphoesterase; 91.4 0.055 1.9E-06 50.1 1.3 20 108-127 11-30 (171)
406 3geh_A MNME, tRNA modification 91.3 0.033 1.1E-06 60.4 -0.4 58 331-388 225-283 (462)
407 1kht_A Adenylate kinase; phosp 91.3 0.067 2.3E-06 49.6 1.8 21 108-128 5-25 (192)
408 3tau_A Guanylate kinase, GMP k 91.3 0.065 2.2E-06 51.2 1.7 21 109-129 11-31 (208)
409 2hf9_A Probable hydrogenase ni 91.0 0.037 1.3E-06 53.1 -0.4 36 333-368 41-76 (226)
410 2fwk_A U6 snRNA-associated SM- 90.9 0.39 1.3E-05 41.9 6.2 75 452-526 29-113 (121)
411 1ko7_A HPR kinase/phosphatase; 90.8 0.095 3.3E-06 53.7 2.4 58 203-267 72-129 (314)
412 3uc9_A Increased recombination 90.7 0.21 7.3E-06 48.6 4.7 140 115-264 38-194 (233)
413 3tif_A Uncharacterized ABC tra 90.7 0.082 2.8E-06 51.8 1.8 22 108-129 33-54 (235)
414 1qhx_A CPT, protein (chloramph 90.5 0.097 3.3E-06 48.1 2.0 20 109-128 6-25 (178)
415 1y96_B Gemin7, SIP3, GEM-assoc 90.4 1.9 6.5E-05 34.8 9.1 68 449-525 17-84 (85)
416 2qtf_A Protein HFLX, GTP-bindi 90.4 0.13 4.3E-06 54.0 3.0 54 333-386 182-235 (364)
417 2qor_A Guanylate kinase; phosp 90.3 0.1 3.4E-06 49.6 2.0 21 109-129 15-35 (204)
418 2yv5_A YJEQ protein; hydrolase 90.2 0.1 3.4E-06 53.2 2.0 22 106-127 165-186 (302)
419 1knq_A Gluconate kinase; ALFA/ 90.2 0.1 3.5E-06 48.0 1.9 20 109-128 11-30 (175)
420 1u0l_A Probable GTPase ENGC; p 90.2 0.083 2.8E-06 53.8 1.3 26 105-130 168-193 (301)
421 2plr_A DTMP kinase, probable t 90.1 0.1 3.5E-06 49.2 1.8 21 108-128 6-26 (213)
422 1t9h_A YLOQ, probable GTPase E 90.1 0.033 1.1E-06 57.0 -1.7 19 111-129 178-196 (307)
423 3s6n_E Small nuclear ribonucle 90.0 0.65 2.2E-05 38.5 6.4 69 453-525 18-90 (92)
424 1kag_A SKI, shikimate kinase I 89.9 0.098 3.4E-06 47.8 1.5 21 109-129 7-27 (173)
425 2cbz_A Multidrug resistance-as 89.8 0.11 3.7E-06 51.0 1.8 22 108-129 33-54 (237)
426 2pcj_A ABC transporter, lipopr 89.7 0.098 3.4E-06 50.8 1.4 22 108-129 32-53 (224)
427 4ido_A Atlastin-1; GTPase, GTP 89.6 0.26 8.8E-06 53.0 4.7 54 113-166 74-151 (457)
428 1tev_A UMP-CMP kinase; ploop, 89.6 0.11 3.7E-06 48.2 1.6 20 109-128 6-25 (196)
429 1np6_A Molybdopterin-guanine d 89.6 0.1 3.5E-06 48.7 1.4 21 109-129 9-29 (174)
430 1b0u_A Histidine permease; ABC 89.5 0.12 3.9E-06 51.6 1.8 22 108-129 34-55 (262)
431 2i3b_A HCR-ntpase, human cance 89.5 0.11 3.8E-06 49.1 1.5 20 109-128 4-23 (189)
432 1htw_A HI0065; nucleotide-bind 89.4 0.12 3.9E-06 47.5 1.6 15 115-129 42-56 (158)
433 3gfo_A Cobalt import ATP-bindi 89.4 0.12 4E-06 52.0 1.8 22 108-129 36-57 (275)
434 2onk_A Molybdate/tungstate ABC 89.4 0.13 4.3E-06 50.7 1.9 19 111-129 29-47 (240)
435 2ff7_A Alpha-hemolysin translo 89.2 0.13 4.3E-06 50.9 1.8 22 108-129 37-58 (247)
436 2bdt_A BH3686; alpha-beta prot 89.2 0.11 3.9E-06 48.3 1.4 19 110-128 6-24 (189)
437 1b34_B Protein (small nuclear 89.2 1.5 5E-05 38.0 8.4 75 452-526 28-113 (118)
438 1sgw_A Putative ABC transporte 89.2 0.13 4.6E-06 49.6 1.9 22 108-129 37-58 (214)
439 3pqc_A Probable GTP-binding pr 89.1 0.27 9.1E-06 45.3 3.9 44 332-376 25-68 (195)
440 1g6h_A High-affinity branched- 89.1 0.13 4.4E-06 51.1 1.8 22 108-129 35-56 (257)
441 2olj_A Amino acid ABC transpor 89.0 0.13 4.5E-06 51.3 1.8 22 108-129 52-73 (263)
442 4g1u_C Hemin import ATP-bindin 89.0 0.13 4.5E-06 51.4 1.7 23 107-129 38-60 (266)
443 2pze_A Cystic fibrosis transme 89.0 0.13 4.6E-06 50.0 1.8 22 108-129 36-57 (229)
444 1mv5_A LMRA, multidrug resista 89.0 0.13 4.3E-06 50.7 1.6 20 110-129 32-51 (243)
445 1h65_A Chloroplast outer envel 88.9 0.34 1.2E-05 48.1 4.8 56 332-388 41-98 (270)
446 1ji0_A ABC transporter; ATP bi 88.9 0.14 4.6E-06 50.4 1.8 22 108-129 34-55 (240)
447 2ixe_A Antigen peptide transpo 88.9 0.13 4.6E-06 51.4 1.8 22 108-129 47-68 (271)
448 3b1v_A Ferrous iron uptake tra 88.9 0.091 3.1E-06 52.7 0.5 36 332-367 5-40 (272)
449 4a9a_A Ribosome-interacting GT 88.9 0.23 7.8E-06 52.2 3.6 57 315-388 73-130 (376)
450 2d2e_A SUFC protein; ABC-ATPas 88.8 0.15 5.1E-06 50.4 2.0 22 108-129 31-52 (250)
451 3ec2_A DNA replication protein 88.8 0.14 4.8E-06 47.4 1.7 14 115-128 47-60 (180)
452 2ehv_A Hypothetical protein PH 88.8 0.15 5E-06 49.5 1.9 15 113-127 37-51 (251)
453 3uie_A Adenylyl-sulfate kinase 88.8 0.13 4.5E-06 48.5 1.5 14 115-128 34-47 (200)
454 2ghi_A Transport protein; mult 88.8 0.14 4.8E-06 50.9 1.8 22 108-129 48-69 (260)
455 3lnc_A Guanylate kinase, GMP k 88.7 0.099 3.4E-06 50.6 0.6 21 109-129 30-51 (231)
456 2zu0_C Probable ATP-dependent 88.6 0.15 5.3E-06 50.8 2.0 22 108-129 48-69 (267)
457 3asz_A Uridine kinase; cytidin 88.6 0.25 8.7E-06 46.7 3.4 14 115-128 15-28 (211)
458 2qi9_C Vitamin B12 import ATP- 88.5 0.15 5.1E-06 50.4 1.8 22 108-129 28-49 (249)
459 1vpl_A ABC transporter, ATP-bi 88.4 0.15 5.2E-06 50.6 1.8 22 108-129 43-64 (256)
460 3aez_A Pantothenate kinase; tr 88.4 0.14 4.8E-06 52.4 1.5 14 115-128 99-112 (312)
461 2eyu_A Twitching motility prot 88.4 0.14 4.9E-06 50.9 1.6 14 115-128 34-47 (261)
462 3c8u_A Fructokinase; YP_612366 88.3 0.26 8.9E-06 46.8 3.3 14 115-128 31-44 (208)
463 2ged_A SR-beta, signal recogni 88.3 0.082 2.8E-06 49.1 -0.3 35 333-367 51-88 (193)
464 2ihy_A ABC transporter, ATP-bi 88.3 0.16 5.3E-06 51.2 1.8 22 108-129 49-70 (279)
465 2yvu_A Probable adenylyl-sulfa 88.2 0.17 5.8E-06 47.0 1.9 20 109-128 16-35 (186)
466 3t61_A Gluconokinase; PSI-biol 88.2 0.16 5.3E-06 48.0 1.6 16 113-128 25-40 (202)
467 2v9p_A Replication protein E1; 88.2 0.16 5.3E-06 51.9 1.7 14 115-128 135-148 (305)
468 4a74_A DNA repair and recombin 88.1 0.14 4.7E-06 49.0 1.2 16 114-129 33-48 (231)
469 1nrj_B SR-beta, signal recogni 88.1 0.089 3E-06 50.0 -0.2 37 331-367 13-52 (218)
470 2nq2_C Hypothetical ABC transp 87.9 0.17 5.8E-06 50.1 1.7 22 108-129 33-54 (253)
471 2j41_A Guanylate kinase; GMP, 87.8 0.3 1E-05 45.8 3.4 21 109-129 9-29 (207)
472 3b85_A Phosphate starvation-in 87.8 0.12 4.1E-06 49.6 0.5 15 115-129 31-45 (208)
473 3qq5_A Small GTP-binding prote 87.7 0.33 1.1E-05 51.8 4.0 57 333-389 37-95 (423)
474 2yz2_A Putative ABC transporte 87.7 0.18 6.1E-06 50.3 1.8 22 108-129 35-56 (266)
475 3cm0_A Adenylate kinase; ATP-b 87.6 0.17 5.7E-06 46.8 1.4 17 112-128 10-26 (186)
476 4dzz_A Plasmid partitioning pr 87.6 1 3.4E-05 42.0 6.9 85 155-246 76-162 (206)
477 3iij_A Coilin-interacting nucl 87.2 0.24 8.2E-06 45.7 2.2 18 111-128 16-33 (180)
478 2jeo_A Uridine-cytidine kinase 87.0 0.2 6.7E-06 49.1 1.6 14 115-128 34-47 (245)
479 2vc8_A Enhancer of mRNA-decapp 87.0 1.4 4.9E-05 35.3 6.2 62 457-526 5-68 (84)
480 1z47_A CYSA, putative ABC-tran 86.9 0.22 7.6E-06 51.9 2.0 22 108-129 43-64 (355)
481 3fvq_A Fe(3+) IONS import ATP- 86.9 0.2 6.9E-06 52.3 1.6 22 108-129 32-53 (359)
482 1ex7_A Guanylate kinase; subst 86.8 0.35 1.2E-05 45.6 3.1 17 113-129 8-24 (186)
483 2v54_A DTMP kinase, thymidylat 86.7 0.24 8.4E-06 46.4 2.0 21 109-129 7-27 (204)
484 2pjz_A Hypothetical protein ST 86.6 0.2 6.9E-06 49.9 1.4 22 108-129 32-53 (263)
485 3tui_C Methionine import ATP-b 86.6 0.24 8.1E-06 51.8 2.0 23 107-129 55-77 (366)
486 2yyz_A Sugar ABC transporter, 86.6 0.24 8.2E-06 51.7 2.0 22 108-129 31-52 (359)
487 2wwf_A Thymidilate kinase, put 86.5 0.26 9.1E-06 46.4 2.1 19 110-128 14-32 (212)
488 2it1_A 362AA long hypothetical 86.4 0.24 8.3E-06 51.7 2.0 22 108-129 31-52 (362)
489 3lw7_A Adenylate kinase relate 86.4 0.39 1.3E-05 43.2 3.2 16 111-126 6-21 (179)
490 3nh6_A ATP-binding cassette SU 86.3 0.17 5.7E-06 51.8 0.6 22 107-128 81-102 (306)
491 3rlf_A Maltose/maltodextrin im 86.2 0.25 8.6E-06 52.0 2.0 23 107-129 30-52 (381)
492 2qnr_A Septin-2, protein NEDD5 86.2 0.22 7.5E-06 50.6 1.5 29 331-359 19-48 (301)
493 2bbw_A Adenylate kinase 4, AK4 86.2 0.43 1.5E-05 46.5 3.6 13 115-127 36-48 (246)
494 1g29_1 MALK, maltose transport 86.1 0.26 8.9E-06 51.7 2.0 22 108-129 31-52 (372)
495 1v43_A Sugar-binding transport 86.1 0.26 8.8E-06 51.8 2.0 23 107-129 38-60 (372)
496 2bbs_A Cystic fibrosis transme 86.0 0.22 7.7E-06 50.4 1.4 21 109-129 67-87 (290)
497 1rj9_A FTSY, signal recognitio 86.0 0.25 8.6E-06 50.3 1.8 68 178-257 220-287 (304)
498 4dhe_A Probable GTP-binding pr 86.0 0.35 1.2E-05 45.8 2.7 22 334-355 33-54 (223)
499 3fb4_A Adenylate kinase; psych 85.9 0.44 1.5E-05 45.2 3.4 14 115-128 9-22 (216)
500 1sxj_E Activator 1 40 kDa subu 85.9 0.89 3E-05 46.5 6.0 14 115-128 45-58 (354)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.6e-32 Score=271.63 Aligned_cols=166 Identities=34% Similarity=0.629 Sum_probs=146.0
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
+++||+|+|+ +|||||||++||+.+.|...+.||+|.++..+.+.+++..+.++||||
T Consensus 12 k~~KivlvGd----------------------~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDt 69 (216)
T 4dkx_A 12 RKFKLVFLGE----------------------QSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDT 69 (216)
T ss_dssp -CEEEEEECS----------------------TTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECC
T ss_pred CcEEEEEECc----------------------CCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEEC
Confidence 4579999999 999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
+|+++|..+++.|+++++++|+|||++++.||+.+..|+..+......++|++|||||+|+..++.++.+++.+++++++
T Consensus 70 aGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~ 149 (216)
T 4dkx_A 70 AGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN 149 (216)
T ss_dssp SCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred CCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC
Confidence 99999999999999999999999999999999999999999988777779999999999999889999999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 243 GTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
+.|++|||++|.||+++|+.|++.+...
T Consensus 150 ~~~~e~SAktg~nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 150 VMFIETSAKAGYNVKQLFRRVAAALPGM 177 (216)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHHHHC---
T ss_pred CeeEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999887643
No 2
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.96 E-value=2.2e-27 Score=228.65 Aligned_cols=169 Identities=37% Similarity=0.639 Sum_probs=151.2
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
....+||+++|+ +|||||||+++|++..+...+.++++.++....+.+++..+.+.||
T Consensus 18 ~~~~~ki~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 75 (191)
T 2a5j_A 18 GSYLFKYIIIGD----------------------TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIW 75 (191)
T ss_dssp TCEEEEEEEESS----------------------TTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEE
T ss_pred cCcceEEEEECc----------------------CCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEE
Confidence 345689999999 9999999999999999888888999999888888899989999999
Q ss_pred ecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHh
Q psy3029 161 DTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKS 240 (617)
Q Consensus 161 Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~ 240 (617)
||+|++++..++..+++++|++|+|||++++.+++.+..|+..+.......+|++||+||+|+...+.+..+++..++..
T Consensus 76 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 155 (191)
T 2a5j_A 76 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFARE 155 (191)
T ss_dssp CCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred ECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887666789999999999987777888889999999
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 241 IGGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 241 ~g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
++++++++||++|.||+++|++|.+.+.+..
T Consensus 156 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 156 HGLIFMETSAKTACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp HTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887654
No 3
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.96 E-value=2.9e-27 Score=227.20 Aligned_cols=168 Identities=33% Similarity=0.566 Sum_probs=154.3
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
....+||+++|+ +|||||||+++|++..+...+.+++|.++....+.+.+..+.+.+|
T Consensus 19 ~~~~~ki~vvG~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~ 76 (189)
T 2gf9_A 19 SDYMFKLLLIGN----------------------SSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIW 76 (189)
T ss_dssp CSEEEEEEEECS----------------------TTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEE
T ss_pred cCceeEEEEECC----------------------CCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEE
Confidence 345689999999 9999999999999999888888999999888888888889999999
Q ss_pred ecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHh
Q psy3029 161 DTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKS 240 (617)
Q Consensus 161 Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~ 240 (617)
||+|++++..++..+++++|++|+|||++++.++..+..|+..+.......+|++||+||+|+...+.+..+++.++++.
T Consensus 77 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 156 (189)
T 2gf9_A 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADD 156 (189)
T ss_dssp ECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred eCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887656689999999999987777888888999999
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 241 IGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 241 ~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
++++++++||++|.||+++|++|.+.+.+.
T Consensus 157 ~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 157 LGFEFFEASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp HTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988654
No 4
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.9e-27 Score=232.18 Aligned_cols=168 Identities=39% Similarity=0.663 Sum_probs=155.0
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ +|||||||+++|+++.+...+.+|++.++..+.+.+++..+.+.+||
T Consensus 24 ~~~~ki~lvG~----------------------~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D 81 (201)
T 2ew1_A 24 DFLFKIVLIGN----------------------AGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 81 (201)
T ss_dssp SEEEEEEEEES----------------------TTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEE
T ss_pred ccceEEEEECc----------------------CCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEE
Confidence 34589999999 99999999999999998888899999999888898999999999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
|+|++++..++..+++++|++|+|||++++.+|+.+..|+..+.......+|++||+||+|+...+.+..+++..++...
T Consensus 82 t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~ 161 (201)
T 2ew1_A 82 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQ 161 (201)
T ss_dssp ECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999998877667899999999999877778888888999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
+++++++||++|.||+++|++|.+.+....
T Consensus 162 ~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 162 DMYYLETSAKESDNVEKLFLDLACRLISEA 191 (201)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887654
No 5
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=231.78 Aligned_cols=168 Identities=38% Similarity=0.611 Sum_probs=145.7
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ +|||||||+++|+++.+...+.+|++.++..+.+.+++..+.+.|||
T Consensus 27 ~~~~ki~vvG~----------------------~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D 84 (201)
T 2hup_A 27 DFLFKLVLVGD----------------------ASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWD 84 (201)
T ss_dssp CEEEEEEEEEC----------------------TTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEEC
T ss_pred ccceEEEEECc----------------------CCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEE
Confidence 44589999999 99999999999999998888889999998888888898889999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
|+|++++..++..+++++|++|+|||++++.+|+.+..|+..+......++|++||+||+|+...+.+..+++.+++..+
T Consensus 85 t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~ 164 (201)
T 2hup_A 85 TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHY 164 (201)
T ss_dssp CTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT
T ss_pred CCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999998877667899999999999877778888899999999
Q ss_pred CC-eEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 242 GG-TYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 242 g~-~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
++ +++++||++|.||+++|++|.+.+....
T Consensus 165 ~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 165 DILCAIETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp TCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 99 9999999999999999999999887543
No 6
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.95 E-value=2.4e-27 Score=222.02 Aligned_cols=163 Identities=42% Similarity=0.731 Sum_probs=149.8
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||
T Consensus 5 ~~~~i~v~G~----------------------~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 62 (170)
T 1r2q_A 5 CQFKLVLLGE----------------------SAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDT 62 (170)
T ss_dssp EEEEEEEECS----------------------TTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred ceEEEEEECC----------------------CCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeC
Confidence 4578889998 999999999999999888888899999988888888988999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
+|++++..++..+++++|++|+|||++++.++..+..|+..+.......+|++||+||+|+..++.+..+++..++...+
T Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 142 (170)
T 1r2q_A 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNS 142 (170)
T ss_dssp CCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred CCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999988766678999999999998777778888889999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 243 GTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
++++++||++|.|++++|++|.+.+
T Consensus 143 ~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 143 LLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999998754
No 7
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.95 E-value=9.1e-28 Score=228.91 Aligned_cols=168 Identities=33% Similarity=0.614 Sum_probs=125.3
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|++..+...+.++++.++....+.+++..+.+.+|||
T Consensus 7 ~~~ki~v~G~----------------------~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt 64 (183)
T 2fu5_C 7 YLFKLLLIGD----------------------SGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64 (183)
T ss_dssp EEEEEEEECC----------------------CCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC
T ss_pred CceEEEEECC----------------------CCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcC
Confidence 3579999999 999999999999998887788899999888888888888999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
+|++++..++..+++++|++|+|||++++.+|..+..|+..+......++|++||+||+|+...+.+..+++..+++.++
T Consensus 65 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~ 144 (183)
T 2fu5_C 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYG 144 (183)
T ss_dssp ---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHT
T ss_pred CCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999988766678999999999998777788888999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHHhhh
Q psy3029 243 GTYYETSALQDQGIEDVFLNVSKGLICLSQ 272 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I~~~l~~~~~ 272 (617)
++++++||++|.||+++|++|.+.+.....
T Consensus 145 ~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 145 IKFMETSAKANINVENAFFTLARDIKAKMD 174 (183)
T ss_dssp CEEEECCC---CCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998876543
No 8
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.95 E-value=4.4e-27 Score=222.40 Aligned_cols=165 Identities=38% Similarity=0.655 Sum_probs=152.6
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ +|||||||+++|++..+...+.++.+.++..+.+.+++..+.+.+||
T Consensus 13 ~~~~~i~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D 70 (179)
T 1z0f_A 13 SYIFKYIIIGD----------------------MGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 70 (179)
T ss_dssp SEEEEEEEECS----------------------TTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEE
T ss_pred ccceEEEEECC----------------------CCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEE
Confidence 34689999999 99999999999999998888889999999888888999999999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
|+|++++..++..+++++|++|+|||++++.+++.+..|+..+.......+|++||+||+|+..++.+..+++.++++.+
T Consensus 71 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 150 (179)
T 1z0f_A 71 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEEN 150 (179)
T ss_dssp CTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT
T ss_pred CCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999998877667899999999999877778888899999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
+++++++||++|.||+++|++|.+.+.
T Consensus 151 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 151 GLLFLEASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999988763
No 9
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.95 E-value=8.9e-27 Score=224.31 Aligned_cols=167 Identities=34% Similarity=0.615 Sum_probs=156.1
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|+++.+...+.++.+.++....+.+++..+.+.||||
T Consensus 15 ~~~ki~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 72 (196)
T 3tkl_A 15 YLFKLLLIGD----------------------SGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 72 (196)
T ss_dssp EEEEEEEECS----------------------TTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred cceEEEEECc----------------------CCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEEC
Confidence 4579999999 999999999999999988889999999998899999999999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
+|++++..++..+++.+|++|+|||++++.+|..+..|+..+.......+|++||+||+|+...+.+..+++..++..++
T Consensus 73 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 152 (196)
T 3tkl_A 73 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG 152 (196)
T ss_dssp CCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT
T ss_pred CCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999988877778999999999998888888888999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 243 GTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
++++++||++|.||+++|++|.+.+....
T Consensus 153 ~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 153 IPFLETSAKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp CCEEEECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999887654
No 10
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.95 E-value=2.1e-27 Score=222.91 Aligned_cols=164 Identities=49% Similarity=0.856 Sum_probs=143.8
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|++..+...+.++++.++....+.+++..+.+.+|||
T Consensus 5 ~~~~i~v~G~----------------------~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt 62 (170)
T 1z08_A 5 YSFKVVLLGE----------------------GCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDT 62 (170)
T ss_dssp EEEEEEEECC----------------------TTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEEC
T ss_pred cceEEEEECc----------------------CCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEEC
Confidence 4578999999 999999999999999888888899999988888888888999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
+|++++..++..+++++|++|+|||++++.++..+..|+..+.......+|++||+||+|+..++.+..+++..+++.++
T Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 142 (170)
T 1z08_A 63 AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVG 142 (170)
T ss_dssp CCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred CCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999877655568999999999998777788888999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 243 GTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
++++++||++|.|++++|++|.+.+.
T Consensus 143 ~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 143 AKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999998774
No 11
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.95 E-value=8.3e-27 Score=218.60 Aligned_cols=162 Identities=43% Similarity=0.773 Sum_probs=150.1
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
.+||+++|+ +|||||||+++|++..+...+.+++|.++....+.+.+..+.+.+|||+
T Consensus 6 ~~~i~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~ 63 (170)
T 1z0j_A 6 ELKVCLLGD----------------------TGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 63 (170)
T ss_dssp EEEEEEECC----------------------TTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEEC
T ss_pred ceEEEEECc----------------------CCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCC
Confidence 478888888 9999999999999999888889999999888888899999999999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG 243 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~ 243 (617)
|++++..++..+++++|++|+|||++++.++..+..|+..+.......+|++||+||+|+...+++..+++..++..+++
T Consensus 64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 143 (170)
T 1z0j_A 64 GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHA 143 (170)
T ss_dssp CSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred CchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999887666789999999999987777888888899999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 244 TYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 244 ~~~evSAktg~gI~eLf~~I~~~l 267 (617)
+++++||++|.|++++|++|.+.+
T Consensus 144 ~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 144 IFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH
Confidence 999999999999999999998765
No 12
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.95 E-value=8.2e-27 Score=224.64 Aligned_cols=168 Identities=40% Similarity=0.663 Sum_probs=154.3
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+|+|+ +|||||||+++|++..+...+.+++|.++..+.+.+.+..+.+.|||
T Consensus 23 ~~~~ki~v~G~----------------------~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 80 (193)
T 2oil_A 23 NFVFKVVLIGE----------------------SGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWD 80 (193)
T ss_dssp SEEEEEEEESS----------------------TTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEE
T ss_pred CcceEEEEECc----------------------CCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEe
Confidence 44589999999 99999999999999998888889999999888888899999999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
|+|++++..++..+++++|++|+|||++++.++..+..|+..+.......+|++||+||+|+...+.+..+++..++...
T Consensus 81 t~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 160 (193)
T 2oil_A 81 TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENN 160 (193)
T ss_dssp ESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT
T ss_pred CCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999998776667899999999999877777888888999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
+++++++||++|.||+++|++|.+.+.+..
T Consensus 161 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 161 GLLFLETSALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999887643
No 13
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.95 E-value=6.6e-27 Score=222.06 Aligned_cols=166 Identities=41% Similarity=0.730 Sum_probs=151.7
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|. +|||||||+++|++..+...+.++++.++....+.+++..+.+.+||
T Consensus 10 ~~~~ki~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 67 (181)
T 2efe_B 10 SINAKLVLLGD----------------------VGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWD 67 (181)
T ss_dssp CEEEEEEEECC----------------------TTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEE
T ss_pred ccceEEEEECc----------------------CCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEe
Confidence 34578999998 99999999999999998888889999999888888898899999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
|+|++++..++..+++++|++|+|||++++.+|..+..|+..+.......+|++||+||+|+...+.+..+++..+++.+
T Consensus 68 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (181)
T 2efe_B 68 TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQEN 147 (181)
T ss_dssp CCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT
T ss_pred CCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999998876667899999999999877778888899999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
+++++++||++|.||+++|++|.+.+..
T Consensus 148 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 148 GLFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp TCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999876643
No 14
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.95 E-value=9.7e-27 Score=225.96 Aligned_cols=167 Identities=31% Similarity=0.545 Sum_probs=154.0
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|++..+...+.+++|.++....+.+++..+.+.+|||
T Consensus 7 ~~~ki~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt 64 (203)
T 1zbd_A 7 YMFKILIIGN----------------------SSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64 (203)
T ss_dssp EEEEEEEECS----------------------TTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEE
T ss_pred eeeEEEEECC----------------------CCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEEC
Confidence 3579999999 999999999999999988888899999988888888998999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
+|++++..++..+++++|++|+|||++++.+|..+..|+..+.......+|++||+||+|+...+.+..+++..++..++
T Consensus 65 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 144 (203)
T 1zbd_A 65 AGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG 144 (203)
T ss_dssp CCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHT
T ss_pred CCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999988765668999999999998877788888899999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 243 GTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
++++++||++|.||+++|++|.+.+....
T Consensus 145 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 173 (203)
T 1zbd_A 145 FEFFEASAKDNINVKQTFERLVDVICEKM 173 (203)
T ss_dssp CEEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887654
No 15
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.95 E-value=5.2e-27 Score=223.24 Aligned_cols=166 Identities=30% Similarity=0.435 Sum_probs=150.3
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ +|||||||+++|+++.+...+.+|.+.++ ...+.+++..+.+.+||
T Consensus 4 ~~~~ki~~~G~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D 60 (181)
T 3t5g_A 4 SKSRKIAILGY----------------------RSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVD 60 (181)
T ss_dssp EEEEEEEEEES----------------------TTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEE
T ss_pred CceEEEEEECc----------------------CCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEe
Confidence 45689999999 99999999999998888889999999887 77778889999999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHHHHHHHh
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKS 240 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~ 240 (617)
|+|++++..++..+++.+|++|+|||++++.+|+.+..|+..+..... ..+|++||+||+|+..++.+..+++..+++.
T Consensus 61 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 140 (181)
T 3t5g_A 61 TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES 140 (181)
T ss_dssp CCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred CCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998866543 4689999999999988888889999999999
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 241 IGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 241 ~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
++++++++||++|.|++++|++|++.+...
T Consensus 141 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 141 WNAAFLESSAKENQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp TTCEEEECCTTSHHHHHHHHHHHHHHHHTC
T ss_pred hCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988654
No 16
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.95 E-value=6.8e-27 Score=223.23 Aligned_cols=167 Identities=37% Similarity=0.621 Sum_probs=153.9
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||
T Consensus 9 ~~~ki~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 66 (186)
T 2bme_A 9 FLFKFLVIGN----------------------AGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 66 (186)
T ss_dssp EEEEEEEEES----------------------TTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEE
T ss_pred cceEEEEECC----------------------CCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeC
Confidence 3579999999 999999999999999988888899999988888888998899999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
+|++++..++..+++++|++|+|||++++.++..+..|+..+.......+|++||+||+|+..++.+..+++..++...+
T Consensus 67 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 146 (186)
T 2bme_A 67 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENE 146 (186)
T ss_dssp CCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999887766678999999999998777788888889999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 243 GTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
++++++||++|.||+++|++|.+.+....
T Consensus 147 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (186)
T 2bme_A 147 LMFLETSALTGENVEEAFVQCARKILNKI 175 (186)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999887654
No 17
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=6.1e-27 Score=219.25 Aligned_cols=153 Identities=43% Similarity=0.792 Sum_probs=141.0
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.++
T Consensus 12 ~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 91 (170)
T 1ek0_A 12 AAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSF 91 (170)
T ss_dssp TTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHH
Confidence 99999999999999998888899999998888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCc---cccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESS---REVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~---~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
..+..|+..+......++|+++|+||+|+... +++..+++..++..++++++++||++|.|++++|++|.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 92 IKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999998876667899999999999755 66778888899999999999999999999999999987654
No 18
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.95 E-value=1.6e-26 Score=225.23 Aligned_cols=167 Identities=33% Similarity=0.621 Sum_probs=154.6
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|++..+...+.++++.++....+.+++..+.+.+|||
T Consensus 7 ~~~ki~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt 64 (206)
T 2bcg_Y 7 YLFKLLLIGN----------------------SGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64 (206)
T ss_dssp EEEEEEEEES----------------------TTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECC
T ss_pred cceEEEEECC----------------------CCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeC
Confidence 3579999999 999999999999999988888999999998888889999999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
+|++++..++..+++++|++|+|||++++.+|..+..|+..+.......+|++||+||+|+...+.+..+++..++..++
T Consensus 65 ~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 144 (206)
T 2bcg_Y 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANK 144 (206)
T ss_dssp TTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999988776678999999999998877788888889999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 243 GTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
++++++||++|.||+++|++|.+.+....
T Consensus 145 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 145 MPFLETSALDSTNVEDAFLTMARQIKESM 173 (206)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887654
No 19
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=219.25 Aligned_cols=167 Identities=34% Similarity=0.657 Sum_probs=151.2
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||
T Consensus 8 ~~~~i~v~G~----------------------~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 65 (181)
T 3tw8_B 8 HLFKLLIIGD----------------------SGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDT 65 (181)
T ss_dssp EEEEEEEECC----------------------TTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEE
T ss_pred cceEEEEECC----------------------CCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcC
Confidence 4579999999 999999999999999888888899999988888889999999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
+|++++..++..++.++|++|+|||++++.++..+..|+..+....+ .+|++||+||+|+...+.+..+++..++..++
T Consensus 66 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 144 (181)
T 3tw8_B 66 AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMG 144 (181)
T ss_dssp TTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred CCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcccCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999987664 47999999999998877788888999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHHhhh
Q psy3029 243 GTYYETSALQDQGIEDVFLNVSKGLICLSQ 272 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I~~~l~~~~~ 272 (617)
++++++||++|.||+++|++|.+.+.....
T Consensus 145 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 145 IQLFETSAKENVNVEEMFNCITELVLRAKK 174 (181)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998876543
No 20
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.95 E-value=6.9e-27 Score=219.16 Aligned_cols=164 Identities=36% Similarity=0.668 Sum_probs=143.3
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
.+||+++|+ +|||||||+++|++..+...+.++++.++....+.+++..+.+.+|||+
T Consensus 3 ~~~i~v~G~----------------------~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 60 (170)
T 1g16_A 3 IMKILLIGD----------------------SGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60 (170)
T ss_dssp EEEEEEEES----------------------TTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCT
T ss_pred ceEEEEECc----------------------CCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCC
Confidence 478999999 9999999999999999888888999999888888888888999999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG 243 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~ 243 (617)
|++++..++..+++++|++|+|||++++.++..+..|+..+.......+|+++|+||+|+ ..+.+..+++..+++.+++
T Consensus 61 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~ 139 (170)
T 1g16_A 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGI 139 (170)
T ss_dssp TGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTC
T ss_pred CChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999998877667899999999999 4456777888899999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 244 TYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 244 ~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
+++++||++|.|++++|++|.+.+.+.
T Consensus 140 ~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 140 PFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999888653
No 21
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.4e-26 Score=219.66 Aligned_cols=166 Identities=39% Similarity=0.609 Sum_probs=143.5
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCC-CccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~-~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
...+||+++|+ +|||||||+++|++..+. ..+.++++.++....+.+++..+.+.+|
T Consensus 8 ~~~~~i~v~G~----------------------~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 65 (180)
T 2g6b_A 8 DVAFKVMLVGD----------------------SGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 65 (180)
T ss_dssp SEEEEEEEECS----------------------TTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEE
T ss_pred CcceEEEEECc----------------------CCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEE
Confidence 34579999999 999999999999998874 4678999999888888889989999999
Q ss_pred ecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHh
Q psy3029 161 DTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKS 240 (617)
Q Consensus 161 Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~ 240 (617)
||+|++++..++..+++++|++|+|||++++.++..+..|+..+.......+|++||+||+|+..++.+..+++..+++.
T Consensus 66 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 145 (180)
T 2g6b_A 66 DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKE 145 (180)
T ss_dssp ECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHH
T ss_pred eCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887766789999999999988777888888899999
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 241 IGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 241 ~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
++++++++||++|.||+++|++|.+.+..
T Consensus 146 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 146 YGLPFMETSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp HTCCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999988754
No 22
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=7.8e-27 Score=225.15 Aligned_cols=165 Identities=48% Similarity=0.794 Sum_probs=152.0
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ +|||||||+++|+++.+...+.+++|.++....+.+++..+.+.+||
T Consensus 21 ~~~~ki~vvG~----------------------~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 78 (192)
T 2fg5_A 21 IRELKVCLLGD----------------------TGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78 (192)
T ss_dssp CEEEEEEEEEC----------------------TTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEE
T ss_pred CCceEEEEECc----------------------CCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEc
Confidence 34689999999 99999999999999998888999999998888888888899999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
|+|++++..++..+++++|++|+|||++++.++..+..|+..+.......+|++||+||+|+..++.+..+++.++++.+
T Consensus 79 t~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~ 158 (192)
T 2fg5_A 79 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESI 158 (192)
T ss_dssp ECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTT
T ss_pred CCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999998877667899999999999876778888899999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
+++++++||++|.||+++|++|.+.+.
T Consensus 159 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 159 GAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred CCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999987653
No 23
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.95 E-value=1e-26 Score=226.16 Aligned_cols=168 Identities=35% Similarity=0.611 Sum_probs=144.0
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+|+|+ +|||||||+++|+++.+...+.++++.++....+.+++..+.+.|||
T Consensus 23 ~~~~ki~v~G~----------------------~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D 80 (200)
T 2o52_A 23 DFLFKFLVIGS----------------------AGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWD 80 (200)
T ss_dssp CEEEEEEEEES----------------------TTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEEC
T ss_pred CcceEEEEECc----------------------CCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEc
Confidence 34589999999 99999999999999998888889999998888888999889999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
|+|++++..++..+++++|++|+|||++++.++..+..|+..+.......+|++||+||+|+..++.+..+++..+++..
T Consensus 81 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~ 160 (200)
T 2o52_A 81 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQEN 160 (200)
T ss_dssp CTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT
T ss_pred CCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999988776667899999999999877778888888999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
+++++++||++|.||+++|++|.+.+....
T Consensus 161 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 190 (200)
T 2o52_A 161 ELMFLETSALTGENVEEAFLKCARTILNKI 190 (200)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887654
No 24
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.5e-27 Score=229.80 Aligned_cols=168 Identities=32% Similarity=0.552 Sum_probs=155.5
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+|+|+ +|||||||+++|++..+...+.++++.++....+.+.+..+.+.|||
T Consensus 21 ~~~~ki~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 78 (191)
T 3dz8_A 21 DYMFKLLIIGN----------------------SSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78 (191)
T ss_dssp EECEEEEEEES----------------------TTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEEC
T ss_pred CeeeEEEEECC----------------------CCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEe
Confidence 35589999999 99999999999999988888889999999989988888889999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
|+|++++..++..+++++|++|+|||++++.+|+.+..|+..+.......+|++||+||+|+..++.+..+++..++..+
T Consensus 79 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 158 (191)
T 3dz8_A 79 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQL 158 (191)
T ss_dssp HHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999998877667899999999999887888888899999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
+++++++||++|.||+++|++|.+.+....
T Consensus 159 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 159 GFDFFEASAKENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999887643
No 25
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.95 E-value=6.9e-27 Score=225.71 Aligned_cols=166 Identities=34% Similarity=0.656 Sum_probs=145.3
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ +|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||
T Consensus 24 ~~~~ki~vvG~----------------------~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D 81 (192)
T 2il1_A 24 DFKLQVIIIGS----------------------RGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWD 81 (192)
T ss_dssp SEEEEEEEECS----------------------TTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEE
T ss_pred CCceEEEEECC----------------------CCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEe
Confidence 45689999999 99999999999999988888889999999888888898899999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
|+|++++..++..+++++|++|+|||++++.+++.+..|+..+.......+|++||+||+|+...+++..+++..+++.+
T Consensus 82 t~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~ 161 (192)
T 2il1_A 82 TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQI 161 (192)
T ss_dssp ECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTS
T ss_pred CCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999988877667899999999999877778888888888875
Q ss_pred -CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 242 -GGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 242 -g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
+++++++||++|.||+++|++|.+.+.+
T Consensus 162 ~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 162 TGMRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999999988754
No 26
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.95 E-value=8.7e-27 Score=218.01 Aligned_cols=163 Identities=34% Similarity=0.579 Sum_probs=149.7
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||
T Consensus 4 ~~~~i~v~G~----------------------~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt 61 (168)
T 1z2a_A 4 VAIKMVVVGN----------------------GAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61 (168)
T ss_dssp CEEEEEEECS----------------------TTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECC
T ss_pred eeEEEEEECc----------------------CCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcC
Confidence 4578999999 999999999999999988888999999998888888888999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
+|++++..++..+++++|++++|||++++.+++.+..|+..+.... ..+|+++|+||+|+...+.+..+++..+++.++
T Consensus 62 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 140 (168)
T 1z2a_A 62 AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLK 140 (168)
T ss_dssp TTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT
T ss_pred CCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999887765 457999999999998777778888889999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 243 GTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
++++++||+++.|++++|++|.+.+.
T Consensus 141 ~~~~~~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 141 LRFYRTSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp CEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999998774
No 27
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.95 E-value=5.5e-27 Score=222.03 Aligned_cols=165 Identities=30% Similarity=0.481 Sum_probs=146.5
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECC-eEEEEEEEe
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE-NKVKLQVWD 161 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~-~~~~l~i~D 161 (617)
..+||+++|+ +|||||||+++|+++.+...+.+|+|.++....+.+++ ..+.+.+||
T Consensus 5 ~~~ki~v~G~----------------------~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~D 62 (178)
T 2hxs_A 5 RQLKIVVLGD----------------------GASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWD 62 (178)
T ss_dssp CEEEEEEECC----------------------TTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEE
T ss_pred ceEEEEEECc----------------------CCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEE
Confidence 4578888888 99999999999999988777889999988888888876 678999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC---CCCeEEEEEECCCCCCccccCHHHHHHHH
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD---EPLVLCVVGNKTDLESSREVNREEAFHYS 238 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~---~~iPvIlVgNK~DL~~~~~v~~~e~~~~~ 238 (617)
|+|++++..++..+++++|++|+|||++++.+++.+..|+..+..... ...|++||+||+|+...+.+..+++..++
T Consensus 63 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~ 142 (178)
T 2hxs_A 63 IGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 142 (178)
T ss_dssp CTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH
T ss_pred CCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHH
Confidence 999999999999999999999999999999999999999998876431 32348999999999877778888888999
Q ss_pred HhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 239 KSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 239 ~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
+.++++++++||++|.||+++|++|.+.+..
T Consensus 143 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 143 QENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp HHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred HHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999987754
No 28
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.95 E-value=8.9e-27 Score=220.28 Aligned_cols=163 Identities=36% Similarity=0.652 Sum_probs=149.9
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||
T Consensus 13 ~~~~i~v~G~----------------------~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt 70 (179)
T 2y8e_A 13 RKFKLVFLGE----------------------QSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 70 (179)
T ss_dssp EEEEEEEEES----------------------TTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEE
T ss_pred cceEEEEECC----------------------CCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEEC
Confidence 3478999999 999999999999999888888999999988888889998999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
+|++++..++..+++++|++|+|||++++.++..+..|+..+.......+|++||+||+|+..++.+..+++..++...+
T Consensus 71 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 150 (179)
T 2y8e_A 71 AGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN 150 (179)
T ss_dssp CCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999887665668999999999998777788888889999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 243 GTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
++++++||++|.|++++|++|.+.+
T Consensus 151 ~~~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 151 VMFIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999998755
No 29
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.95 E-value=2.5e-26 Score=217.62 Aligned_cols=168 Identities=30% Similarity=0.472 Sum_probs=150.1
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
+...+||+++|+ +|||||||+++|++..+...+.+|.+..+. ..+.+++..+.+.+|
T Consensus 6 ~~~~~~i~v~G~----------------------~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~ 62 (181)
T 2fn4_A 6 PSETHKLVVVGG----------------------GGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDIL 62 (181)
T ss_dssp SSCEEEEEEEEC----------------------TTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEE
T ss_pred CCCceEEEEECC----------------------CCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEE
Confidence 345689999999 999999999999999888888899988765 667788888999999
Q ss_pred ecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHh-cCCCCCeEEEEEECCCCCCccccCHHHHHHHHH
Q psy3029 161 DTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKR-NVDEPLVLCVVGNKTDLESSREVNREEAFHYSK 239 (617)
Q Consensus 161 Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~-~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~ 239 (617)
||+|++++..++..+++++|++++|||++++.++..+..|+..+.+ .....+|++||+||+|+...+.+..+++..++.
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~ 142 (181)
T 2fn4_A 63 DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGA 142 (181)
T ss_dssp ECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred ECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988844 334568999999999998777788888889999
Q ss_pred hcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 240 SIGGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 240 ~~g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
..+++++++||++|.||+++|++|.+.+....
T Consensus 143 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 143 SHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp HTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred HcCCeEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999886544
No 30
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.95 E-value=1e-26 Score=225.55 Aligned_cols=166 Identities=26% Similarity=0.344 Sum_probs=145.6
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ +|||||||+++|++..+...+.++.+.++..+.+.+++..+.+.+||
T Consensus 21 ~~~~ki~vvG~----------------------~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D 78 (195)
T 3cbq_A 21 DGIFKVMLVGE----------------------SGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYD 78 (195)
T ss_dssp -CEEEEEEECS----------------------TTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEEC
T ss_pred CcEEEEEEECC----------------------CCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEe
Confidence 34589999999 99999999999986554444556777787888888899999999999
Q ss_pred cCCcccccc-cchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHHHHHHH
Q psy3029 162 TAGQERFRS-MAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSK 239 (617)
Q Consensus 162 t~G~e~~~~-~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~ 239 (617)
|+|++++.. ++..+++.+|++|+|||++++.+|..+..|+..+..... ..+|++||+||+|+...+.+..+++..+++
T Consensus 79 t~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~ 158 (195)
T 3cbq_A 79 IWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG 158 (195)
T ss_dssp CCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHH
T ss_pred cCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHH
Confidence 999988765 778889999999999999999999999999999877653 468999999999998778888888999999
Q ss_pred hcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 240 SIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 240 ~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
.++++++++||++|.||+++|++|++.+..
T Consensus 159 ~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 159 TLSCKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp HTTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred HhCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999988754
No 31
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.95 E-value=8.8e-27 Score=224.16 Aligned_cols=164 Identities=23% Similarity=0.420 Sum_probs=143.1
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
....+||+++|+ +|||||||+++|+++.+...+.+|++.++ ...+.+++..+.+.||
T Consensus 18 ~~~~~ki~vvG~----------------------~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~ 74 (187)
T 3c5c_A 18 GPLEVNLAILGR----------------------RGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVM 74 (187)
T ss_dssp --CEEEEEEECC----------------------TTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEE
T ss_pred CCceEEEEEECC----------------------CCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEE
Confidence 345689999999 99999999999999998888999999776 4567788889999999
Q ss_pred ecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC---CCCeEEEEEECCCCCCccccCHHHHHHH
Q psy3029 161 DTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD---EPLVLCVVGNKTDLESSREVNREEAFHY 237 (617)
Q Consensus 161 Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~---~~iPvIlVgNK~DL~~~~~v~~~e~~~~ 237 (617)
||+|++++..+ ..+++++|++|+|||++++.+|+.+..|+..+..... ..+|++||+||+|+...+.+..+++.++
T Consensus 75 Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 153 (187)
T 3c5c_A 75 DTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVAL 153 (187)
T ss_dssp ECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHH
T ss_pred ECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHH
Confidence 99999988875 6799999999999999999999999999999877531 4579999999999987778888899999
Q ss_pred HHhcCCeEEEEcC-CCCCCHHHHHHHHHHHHH
Q psy3029 238 SKSIGGTYYETSA-LQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 238 ~~~~g~~~~evSA-ktg~gI~eLf~~I~~~l~ 268 (617)
++.++++++++|| ++|.||+++|+.|++.+.
T Consensus 154 ~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 154 AGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred HHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 9999999999999 899999999999988764
No 32
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.95 E-value=3.3e-26 Score=218.09 Aligned_cols=165 Identities=27% Similarity=0.436 Sum_probs=149.7
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ +|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||
T Consensus 16 ~~~~ki~v~G~----------------------~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D 72 (183)
T 3kkq_A 16 LPTYKLVVVGD----------------------GGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLD 72 (183)
T ss_dssp CCEEEEEEECS----------------------TTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEE
T ss_pred CCceEEEEECC----------------------CCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEE
Confidence 34579999999 99999999999999988888999998876 67778889999999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhc-CCCCCeEEEEEECCCCCCccccCHHHHHHHHHh
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRN-VDEPLVLCVVGNKTDLESSREVNREEAFHYSKS 240 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~-~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~ 240 (617)
|+|++++..++..+++++|++|+|||++++.+|+.+..|+..+... ....+|++||+||+|+...+.+..+++..+++.
T Consensus 73 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~ 152 (183)
T 3kkq_A 73 TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATK 152 (183)
T ss_dssp CCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988664 335689999999999988888899999999999
Q ss_pred cCCeEEEEcCC-CCCCHHHHHHHHHHHHHH
Q psy3029 241 IGGTYYETSAL-QDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 241 ~g~~~~evSAk-tg~gI~eLf~~I~~~l~~ 269 (617)
++++++++||+ ++.||+++|++|.+.+.+
T Consensus 153 ~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 153 YNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp HTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred hCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 99999999999 999999999999987753
No 33
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.95 E-value=1.9e-26 Score=216.47 Aligned_cols=164 Identities=26% Similarity=0.343 Sum_probs=133.0
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
.+||+++|+ +|||||||+++|++..+.....++.+.+.....+.+++..+.+.+|||+
T Consensus 2 ~~ki~ivG~----------------------~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 59 (169)
T 3q85_A 2 VFKVMLVGE----------------------SGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIW 59 (169)
T ss_dssp EEEEEEECS----------------------TTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCC
T ss_pred cEEEEEECC----------------------CCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECC
Confidence 368888888 9999999999999877766666777788888888899999999999999
Q ss_pred Ccccccc-cchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 164 GQERFRS-MAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 164 G~e~~~~-~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
|++++.. +...+++++|++++|||++++.+|+.+..|+..+..... .++|++||+||+|+.+.+.+..+++..+++.+
T Consensus 60 g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 139 (169)
T 3q85_A 60 EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 139 (169)
T ss_dssp CC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT
T ss_pred CccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHc
Confidence 9998876 777889999999999999999999999999999887654 36899999999999877888899999999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
+++++++||++|.|++++|++|.+.+..
T Consensus 140 ~~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 140 SCKHIETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCcEEEecCccCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999988754
No 34
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.95 E-value=3e-26 Score=216.12 Aligned_cols=165 Identities=27% Similarity=0.358 Sum_probs=136.8
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
.+||+++|+ +|||||||+++|++..+.. ..+++|.++....+.+++..+.+.+|||+
T Consensus 4 ~~ki~i~G~----------------------~~vGKSsl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 60 (175)
T 2nzj_A 4 LYRVVLLGD----------------------PGVGKTSLASLFAGKQERD-LHEQLGEDVYERTLTVDGEDTTLVVVDTW 60 (175)
T ss_dssp EEEEEEECC----------------------TTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC
T ss_pred EEEEEEECC----------------------CCccHHHHHHHHhcCCCcc-ccCccccceeEEEEEECCEEEEEEEEecC
Confidence 468888888 9999999999999988654 34678888888888899999999999999
Q ss_pred Cccc--ccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHh
Q psy3029 164 GQER--FRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKS 240 (617)
Q Consensus 164 G~e~--~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~ 240 (617)
|++. +..+...+++.+|++++|||++++.+|+.+..|+..+.... ...+|++||+||+|+...+++..+++..++..
T Consensus 61 g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 140 (175)
T 2nzj_A 61 EAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVV 140 (175)
T ss_dssp -------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred CCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHH
Confidence 9987 56677888999999999999999999999999999887753 34589999999999988778888888889999
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 241 IGGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 241 ~g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
++++++++||++|.||+++|++|.+.+....
T Consensus 141 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 141 FDCKFIETSATLQHNVAELFEGVVRQLRLRR 171 (175)
T ss_dssp HTSEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999886543
No 35
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.95 E-value=3e-26 Score=217.43 Aligned_cols=161 Identities=22% Similarity=0.380 Sum_probs=137.7
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ +|||||||+++|+++.+.. +.+|++.. +.+.+.+++..+.+.+||
T Consensus 5 ~~~~ki~~vG~----------------------~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~D 60 (178)
T 2iwr_A 5 IPELRLGVLGD----------------------ARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIRE 60 (178)
T ss_dssp CCEEEEEEECC----------------------GGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEE
T ss_pred CCceEEEEECC----------------------CCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEE
Confidence 45678999998 9999999999999998875 78888865 467778888899999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhc---CCCCCeEEEEEECCCCC--CccccCHHHHHH
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRN---VDEPLVLCVVGNKTDLE--SSREVNREEAFH 236 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~---~~~~iPvIlVgNK~DL~--~~~~v~~~e~~~ 236 (617)
|+|+++ ..+++++|++|+|||++++.+|..+..|+..+... ....+|++||+||+|+. ..+.+..+++.+
T Consensus 61 t~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~ 135 (178)
T 2iwr_A 61 EAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARA 135 (178)
T ss_dssp CSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHH
T ss_pred CCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHH
Confidence 999986 56889999999999999999999999876665443 33568999999999993 456778888888
Q ss_pred HHHhc-CCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 237 YSKSI-GGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 237 ~~~~~-g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
++..+ +++++++||++|.||+++|++|.+.+....
T Consensus 136 ~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 136 LXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLR 171 (178)
T ss_dssp HHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence 98876 689999999999999999999999887654
No 36
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.2e-26 Score=229.61 Aligned_cols=168 Identities=33% Similarity=0.600 Sum_probs=145.5
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+|+|+ +|||||||+++|++..+...+.++++.++....+.+++..+.+.|||
T Consensus 11 ~~~~ki~v~G~----------------------~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 68 (223)
T 3cpj_B 11 DLLFKIVLIGD----------------------SGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68 (223)
T ss_dssp CEEEEEEEESC----------------------TTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEEC
T ss_pred CeeeEEEEECc----------------------CCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEE
Confidence 34579999999 99999999999999998888889999999888888999889999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
|+|+++|..++..+++.+|++|+|||++++.+|+.+..|+..+.......+|++||+||+|+...+.+..+++..++..+
T Consensus 69 t~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~ 148 (223)
T 3cpj_B 69 TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQEN 148 (223)
T ss_dssp CTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHT
T ss_pred CCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999998876666899999999999877778888888999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
+++++++||+++.||+++|++|.+.+....
T Consensus 149 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 149 QLLFTETSALNSENVDKAFEELINTIYQKV 178 (223)
T ss_dssp TCEEEECCCC-CCCHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999886543
No 37
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.95 E-value=1.5e-26 Score=222.15 Aligned_cols=166 Identities=34% Similarity=0.606 Sum_probs=148.0
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
....+||+++|+ +|||||||+++|+++.+...+.++++.++....+.+++..+.+.||
T Consensus 17 ~~~~~ki~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~ 74 (189)
T 1z06_A 17 RSRIFKIIVIGD----------------------SNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 74 (189)
T ss_dssp --CEEEEEEECC----------------------TTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEE
T ss_pred CCceEEEEEECC----------------------CCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEE
Confidence 345689999999 9999999999999999888889999999988888899989999999
Q ss_pred ecCCccccc-ccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHH
Q psy3029 161 DTAGQERFR-SMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYS 238 (617)
Q Consensus 161 Dt~G~e~~~-~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~ 238 (617)
||+|++++. .++..+++++|++|+|||++++.+|..+..|+..+.... ..++|++||+||+|+...+++..+++..++
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~ 154 (189)
T 1z06_A 75 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA 154 (189)
T ss_dssp ECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred ECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHH
Confidence 999999998 889999999999999999999999999999999988765 456899999999999877778888889999
Q ss_pred HhcCCeEEEEcCCCC---CCHHHHHHHHHHHHH
Q psy3029 239 KSIGGTYYETSALQD---QGIEDVFLNVSKGLI 268 (617)
Q Consensus 239 ~~~g~~~~evSAktg---~gI~eLf~~I~~~l~ 268 (617)
..++++++++||+++ .||+++|++|++.+.
T Consensus 155 ~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 155 DTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp HHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred HHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 999999999999999 999999999987663
No 38
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.94 E-value=5.8e-26 Score=218.89 Aligned_cols=165 Identities=34% Similarity=0.586 Sum_probs=147.1
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeE------
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENK------ 154 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~------ 154 (617)
....+||+++|. +|||||||+++|++..+...+.+|++.++....+.+++..
T Consensus 4 ~~~~~ki~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 61 (208)
T 3clv_A 4 KKSSYKTVLLGE----------------------SSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSN 61 (208)
T ss_dssp CCSSEEEEEECC----------------------TTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC--------
T ss_pred CCcceEEEEECC----------------------CCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccc
Confidence 345689999999 9999999999999999888899999999888888777655
Q ss_pred -------------------------------EEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHH
Q psy3029 155 -------------------------------VKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKE 203 (617)
Q Consensus 155 -------------------------------~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~ 203 (617)
+.+.||||+|++++..++..+++.+|++|+|||++++.++..+..|+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~ 141 (208)
T 3clv_A 62 NEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQ 141 (208)
T ss_dssp -----------------------CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 204 LKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 204 i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
+..... +|+++|+||+| ..++.+..+++.+++...+++++++||++|.|++++|++|.+.+.+.
T Consensus 142 i~~~~~--~piilv~NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 142 LKISSN--YIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp HHHHSC--CEEEEEEECTT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHhhCC--CcEEEEEECCC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 887654 79999999999 55567788889999999999999999999999999999999887654
No 39
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=225.52 Aligned_cols=166 Identities=33% Similarity=0.557 Sum_probs=138.7
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
....+||+|+|+ +|||||||+++|+++.+...+.+++|.++....+.+++..+.+.||
T Consensus 25 ~~~~~ki~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~ 82 (199)
T 2p5s_A 25 SQKAYKIVLAGD----------------------AAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLW 82 (199)
T ss_dssp ---CEEEEEESS----------------------TTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEE
T ss_pred cCCCeEEEEECc----------------------CCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEE
Confidence 345689999999 9999999999999999888888999999888888899999999999
Q ss_pred ecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCC------CccccCHHHH
Q psy3029 161 DTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLE------SSREVNREEA 234 (617)
Q Consensus 161 Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~------~~~~v~~~e~ 234 (617)
||+|++++..++..+++++|++|+|||++++.++..+..|+..+.......+|++||+||+|+. ..+.+..+++
T Consensus 83 Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~ 162 (199)
T 2p5s_A 83 DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFG 162 (199)
T ss_dssp ECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHH
T ss_pred ECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHH
Confidence 9999999999999999999999999999999999999999999887765668999999999995 3466778888
Q ss_pred HHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 235 ~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
..++..++++++++||++|.||+++|++|++.+.
T Consensus 163 ~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 163 EKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999999999999988764
No 40
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.94 E-value=4.8e-26 Score=218.68 Aligned_cols=162 Identities=25% Similarity=0.442 Sum_probs=142.5
Q ss_pred ccccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEE
Q psy3029 80 LVSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQV 159 (617)
Q Consensus 80 ~~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i 159 (617)
.....+||+++|+ +|||||||+++|+++.+...+.+|.+ . +.+.+.+++..+.+.|
T Consensus 16 ~~~~~~ki~ivG~----------------------~~vGKSsL~~~~~~~~~~~~~~~t~~-~-~~~~~~~~~~~~~l~i 71 (184)
T 3ihw_A 16 FQGPELKVGIVGN----------------------LSSGKSALVHRYLTGTYVQEESPEGG-R-FKKEIVVDGQSYLLLI 71 (184)
T ss_dssp CCCCEEEEEEECC----------------------TTSCHHHHHHHHHHSSCCCCCCTTCE-E-EEEEEEETTEEEEEEE
T ss_pred CCCCeeEEEEECC----------------------CCCCHHHHHHHHhcCCCCCCcCCCcc-e-EEEEEEECCEEEEEEE
Confidence 3456789999999 99999999999999998888888743 3 4577888999999999
Q ss_pred EecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCeEEEEEECCCCC--CccccCHHHHHH
Q psy3029 160 WDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLE--SSREVNREEAFH 236 (617)
Q Consensus 160 ~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~--~~~~v~~~e~~~ 236 (617)
|||+|++++. +++++|++|+|||++++.+|+.+..|+..+..... ..+|++||+||+|+. ..+.+..+++..
T Consensus 72 ~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~ 146 (184)
T 3ihw_A 72 RDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARK 146 (184)
T ss_dssp EECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHH
T ss_pred EECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHH
Confidence 9999998876 88899999999999999999999999999987653 458999999999993 556788889999
Q ss_pred HHHhcC-CeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 237 YSKSIG-GTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 237 ~~~~~g-~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
++..++ ++|++|||++|.||+++|++|++.+...
T Consensus 147 ~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 147 LSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 999997 8999999999999999999999988654
No 41
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.94 E-value=3.7e-26 Score=218.82 Aligned_cols=167 Identities=34% Similarity=0.551 Sum_probs=150.0
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEE-EEEEEECCe--------
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFF-TAKINVGEN-------- 153 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~-~~~i~~~~~-------- 153 (617)
..+||+++|+ +|||||||+++|+++.+...+.+|++.++. .+.+.+++.
T Consensus 10 ~~~ki~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 67 (195)
T 3bc1_A 10 YLIKFLALGD----------------------SGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRG 67 (195)
T ss_dssp EEEEEEEECS----------------------TTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCC
T ss_pred eeEEEEEECC----------------------CCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccC
Confidence 4579999999 999999999999999888888899999877 566666655
Q ss_pred -EEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCH
Q psy3029 154 -KVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNR 231 (617)
Q Consensus 154 -~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~ 231 (617)
.+.+.+|||+|++++..++..+++++|++|+|||++++.++..+..|+..+..... ..+|++||+||+|+..++.+..
T Consensus 68 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 147 (195)
T 3bc1_A 68 QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKE 147 (195)
T ss_dssp EEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCH
T ss_pred cEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH
Confidence 78999999999999999999999999999999999999999999999999887664 5689999999999987777888
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 232 EEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 232 ~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
+++.+++..++++++++||+++.||+++|++|.+.+.+..
T Consensus 148 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 148 EEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp HHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 8888999999999999999999999999999999887654
No 42
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.94 E-value=1.6e-26 Score=227.57 Aligned_cols=165 Identities=27% Similarity=0.488 Sum_probs=146.0
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ +|||||||+++|+++.+...+.+|++.++ ...+.+++..+.+.|||
T Consensus 25 ~~~~ki~vvG~----------------------~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D 81 (214)
T 3q3j_B 25 VARCKLVLVGD----------------------VQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWD 81 (214)
T ss_dssp --CEEEEEECS----------------------TTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEE
T ss_pred cceEEEEEECc----------------------CCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEE
Confidence 34589999999 99999999999999999888999999876 55667788889999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHH-HHHHHHHHHhcCCCCCeEEEEEECCCCCCc------------cc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAA-IKTWVKELKRNVDEPLVLCVVGNKTDLESS------------RE 228 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~-l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~------------~~ 228 (617)
|+|+++|..++..+++++|++|+|||++++.+|.. +..|+..+....+ ++|++||+||+|+..+ +.
T Consensus 82 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 160 (214)
T 3q3j_B 82 TSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAP 160 (214)
T ss_dssp ECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEECGGGGGCHHHHHHHHHTTCCC
T ss_pred CCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccchhhhhhhcccccCc
Confidence 99999999999999999999999999999999998 6899999988764 5899999999999653 66
Q ss_pred cCHHHHHHHHHhcCC-eEEEEcCCCCCC-HHHHHHHHHHHHHHh
Q psy3029 229 VNREEAFHYSKSIGG-TYYETSALQDQG-IEDVFLNVSKGLICL 270 (617)
Q Consensus 229 v~~~e~~~~~~~~g~-~~~evSAktg~g-I~eLf~~I~~~l~~~ 270 (617)
+..+++..+++.+++ +|++|||++|.| |+++|+.|.+.+...
T Consensus 161 v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 161 ISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp CCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 888999999999999 999999999998 999999999988654
No 43
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=6.8e-26 Score=217.69 Aligned_cols=164 Identities=36% Similarity=0.687 Sum_probs=149.6
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|++..+...+.++++.++....+.+++..+.+.||||
T Consensus 14 ~~~~i~v~G~----------------------~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt 71 (195)
T 1x3s_A 14 TTLKILIIGE----------------------SGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDT 71 (195)
T ss_dssp EEEEEEEECS----------------------TTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEE
T ss_pred CceEEEEECC----------------------CCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeC
Confidence 4579999999 999999999999999988889999999998888889999999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
+|++++..++..+++++|++|+|||++++.++..+..|+..+..... ..+|++||+||+|+. .+.+..+++..+++.+
T Consensus 72 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~ 150 (195)
T 1x3s_A 72 AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKH 150 (195)
T ss_dssp CSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHT
T ss_pred CCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999877652 468999999999994 4567778888999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
+++++++||+++.||+++|++|.+.+..
T Consensus 151 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 151 SMLFIEASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998864
No 44
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=1.8e-26 Score=224.32 Aligned_cols=170 Identities=28% Similarity=0.451 Sum_probs=145.6
Q ss_pred cccccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEE
Q psy3029 79 MLVSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQ 158 (617)
Q Consensus 79 ~~~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~ 158 (617)
|.....+||+++|+ +|||||||+++|++..+...+.+|.+..+ ...+.+++..+.+.
T Consensus 19 ~~~~~~~ki~vvG~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~ 75 (201)
T 3oes_A 19 MPLVRYRKVVILGY----------------------RCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLH 75 (201)
T ss_dssp ----CEEEEEEEES----------------------TTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEE
T ss_pred CCCCCcEEEEEECC----------------------CCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEE
Confidence 33456789999999 99999999999999999888889998776 56666677788999
Q ss_pred EEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHHHHH
Q psy3029 159 VWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHY 237 (617)
Q Consensus 159 i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~~~~ 237 (617)
||||+|++++..++..+++++|++|+|||++++.+|+.+..|+..+..... ..+|++||+||+|+..++.+..+++..+
T Consensus 76 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 155 (201)
T 3oes_A 76 LVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKL 155 (201)
T ss_dssp EEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHH
Confidence 999999999999999999999999999999999999999999999876532 4589999999999988888888899999
Q ss_pred HHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 238 SKSIGGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 238 ~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
++.++++++++||++|.||+++|++|.+.+....
T Consensus 156 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 156 AESWGATFMESSARENQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp HHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999887654
No 45
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=8.8e-26 Score=220.47 Aligned_cols=166 Identities=35% Similarity=0.653 Sum_probs=151.3
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..++|+|+|+ +|||||||+++|++..+...+.++++.++....+.+++..+.+.||||
T Consensus 19 ~~~~i~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 76 (213)
T 3cph_A 19 SIMKILLIGD----------------------SGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 76 (213)
T ss_dssp -CEEEEEECS----------------------TTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECC
T ss_pred cceEEEEECC----------------------CCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeC
Confidence 3579999999 999999999999999888888899999988888888998899999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
+|++++..++..++..+|++|+|||++++.+|..+..|+..+.......+|++||+||+|+ ..+.+..+++..++..++
T Consensus 77 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~ 155 (213)
T 3cph_A 77 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELG 155 (213)
T ss_dssp TTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999998877667899999999999 456677788888999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 243 GTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
++++++||++|.||+++|++|.+.+....
T Consensus 156 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 156 IPFIESSAKNDDNVNEIFFTLAKLIQEKI 184 (213)
T ss_dssp CCEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887654
No 46
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.94 E-value=5.8e-26 Score=214.77 Aligned_cols=164 Identities=35% Similarity=0.632 Sum_probs=143.9
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..++|+++|+ +|||||||+++|++..+...+.++++.++....+.+++..+.+.+|||
T Consensus 6 ~~~~i~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 63 (177)
T 1wms_A 6 SLFKVILLGD----------------------GGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 63 (177)
T ss_dssp EEEEEEEECC----------------------TTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEEC
T ss_pred ceeEEEEECC----------------------CCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeC
Confidence 4578999999 999999999999999888888899999988888889998899999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC----CCCeEEEEEECCCCCCccccCHHHHHHHH
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD----EPLVLCVVGNKTDLESSREVNREEAFHYS 238 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~----~~iPvIlVgNK~DL~~~~~v~~~e~~~~~ 238 (617)
+|++++..++..+++++|++|+|||++++.++..+..|+..+..... ..+|+++|+||+|+. .+.+..+++.+++
T Consensus 64 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~ 142 (177)
T 1wms_A 64 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWC 142 (177)
T ss_dssp CCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHH
T ss_pred CCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHH
Confidence 99999999999999999999999999999999999999998876543 568999999999997 4567778888888
Q ss_pred H-hcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 239 K-SIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 239 ~-~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
. ..+++++++||++|.|++++|++|.+.+..
T Consensus 143 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 143 RDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp HHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 8 567899999999999999999999988754
No 47
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.94 E-value=5.4e-26 Score=212.39 Aligned_cols=152 Identities=28% Similarity=0.530 Sum_probs=136.3
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+|||+|++++..++..+++++|++++|||++++.++
T Consensus 12 ~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 90 (167)
T 1c1y_A 12 GGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTF 90 (167)
T ss_dssp TTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHH
Confidence 99999999999999988888889988765 45667788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHhc-CCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKSI-GGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 195 ~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~-g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
..+..|+..+.... ...+|+++|+||+|+..++.+..+++..+++.+ +++++++||++|.|++++|++|.+.+
T Consensus 91 ~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 91 NDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp HTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 99999998887653 346899999999999877778888888999887 78999999999999999999998876
No 48
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.94 E-value=5.1e-26 Score=212.83 Aligned_cols=162 Identities=25% Similarity=0.315 Sum_probs=122.5
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
.+||+++|+ +|||||||+++|++..+ ....++.+.++ ...+.+++..+.+.+|||+
T Consensus 2 ~~ki~~vG~----------------------~~~GKSsli~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~ 57 (166)
T 3q72_A 2 VYKVLLLGA----------------------PGVGKSALARIFGGVED-GPEAEAAGHTY-DRSIVVDGEEASLMVYDIW 57 (166)
T ss_dssp CCEEEEEES----------------------TTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC
T ss_pred eEEEEEECC----------------------CCCCHHHHHHHHcCccc-cCCCCccccce-EEEEEECCEEEEEEEEECC
Confidence 368888888 99999999999997764 35567777765 5667788999999999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
|++++..++..+++.+|++++|||++++.+|+.+..|+..+.... ..++|++||+||+|+..++.+..+++..++..++
T Consensus 58 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 137 (166)
T 3q72_A 58 EQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD 137 (166)
T ss_dssp ---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTT
T ss_pred CCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999987753 3468999999999998888888999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 243 GTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
++++++||++|.|++++|++|.+.+..
T Consensus 138 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 138 CKFIETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp CEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred CcEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999988754
No 49
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.94 E-value=7.8e-26 Score=218.15 Aligned_cols=164 Identities=26% Similarity=0.504 Sum_probs=147.1
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ +|||||||+++|+++.+...+.+|++.++. ..+.+++..+.+.+||
T Consensus 21 ~~~~ki~~vG~----------------------~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D 77 (194)
T 3reg_A 21 KKALKIVVVGD----------------------GAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWD 77 (194)
T ss_dssp CEEEEEEEECS----------------------TTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEE
T ss_pred ceeeEEEEECc----------------------CCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEE
Confidence 45689999999 999999999999999988888999988765 4667888999999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCeEEEEEECCCCCCc--cccCHHHHHHHH
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAI-KTWVKELKRNVDEPLVLCVVGNKTDLESS--REVNREEAFHYS 238 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l-~~~l~~i~~~~~~~iPvIlVgNK~DL~~~--~~v~~~e~~~~~ 238 (617)
|+|++++..++..+++++|++|+|||++++.+|..+ ..|+..+..... .+|++||+||+|+..+ +.+..+++..++
T Consensus 78 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 156 (194)
T 3reg_A 78 TAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLKVDLRKDGSDDVTKQEGDDLC 156 (194)
T ss_dssp ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEEEEECGGGCCTTTTCCCHHHHHHHH
T ss_pred CCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccCCCCcccHHHHHHHH
Confidence 999999999999999999999999999999999997 679888877654 4799999999999753 667888899999
Q ss_pred HhcCCe-EEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 239 KSIGGT-YYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 239 ~~~g~~-~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
+.+++. ++++||++|.||+++|++|.+.+..
T Consensus 157 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 157 QKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp HHHTCSCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred HhcCCCEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 999997 9999999999999999999998764
No 50
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.94 E-value=5.6e-26 Score=211.99 Aligned_cols=153 Identities=31% Similarity=0.526 Sum_probs=135.4
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||+|++++..++..+++++|++++|||++++.++
T Consensus 13 ~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 91 (168)
T 1u8z_A 13 GGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESF 91 (168)
T ss_dssp TTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHH
Confidence 99999999999999988888888888764 45567788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
..+..|+..+..... ..+|+++|+||+|+...+++..+++..++..++++++++||++|.|++++|++|.+.+.
T Consensus 92 ~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 92 AATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp HHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999877654 46899999999999877778888899999999999999999999999999999998774
No 51
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=7.1e-26 Score=218.24 Aligned_cols=164 Identities=28% Similarity=0.514 Sum_probs=145.9
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
....+||+++|+ +|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+|
T Consensus 15 ~~~~~ki~v~G~----------------------~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~ 71 (194)
T 2atx_A 15 GALMLKCVVVGD----------------------GAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLY 71 (194)
T ss_dssp EEEEEEEEEEEC----------------------TTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEE
T ss_pred CCceEEEEEECC----------------------CCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEE
Confidence 345689999999 99999999999999988888889988775 4566777888999999
Q ss_pred ecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCc------------c
Q psy3029 161 DTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDEPLVLCVVGNKTDLESS------------R 227 (617)
Q Consensus 161 Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~------------~ 227 (617)
||+|++++..++..+++++|++|+|||++++.+|..+. .|+..+....+ ++|++||+||+|+... +
T Consensus 72 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 150 (194)
T 2atx_A 72 DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEK 150 (194)
T ss_dssp CCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCC
T ss_pred ECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCc
Confidence 99999999999999999999999999999999999997 79999888654 5799999999999753 4
Q ss_pred ccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 228 EVNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 228 ~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
.+..+++..+++.+++ +++++||++|.||+++|++|.+.+.
T Consensus 151 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 151 PICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 6778888999999998 9999999999999999999998764
No 52
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.94 E-value=2e-26 Score=226.29 Aligned_cols=169 Identities=36% Similarity=0.586 Sum_probs=150.8
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCe-------
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGEN------- 153 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~------- 153 (617)
....+||+|+|+ +|||||||+++|++..+...+.+|++.++..+.+.+++.
T Consensus 22 ~~~~~ki~vvG~----------------------~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 79 (217)
T 2f7s_A 22 YDYLIKLLALGD----------------------SGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSG 79 (217)
T ss_dssp CSEEEEEEEESC----------------------TTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------C
T ss_pred cceeEEEEEECc----------------------CCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCcccccccc
Confidence 345689999999 999999999999999888888899998888777777665
Q ss_pred ---EEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCcccc
Q psy3029 154 ---KVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREV 229 (617)
Q Consensus 154 ---~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v 229 (617)
.+.+.||||+|++++..++..+++++|++|+|||++++.++..+..|+..+..... ..+|++||+||+|+..++.+
T Consensus 80 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v 159 (217)
T 2f7s_A 80 KAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREV 159 (217)
T ss_dssp CEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCS
T ss_pred CceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccccccc
Confidence 78999999999999999999999999999999999999999999999988766543 56899999999999877778
Q ss_pred CHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 230 NREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 230 ~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
..+++..++..++++++++||+++.||+++|++|.+.+....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 160 NERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp CHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 888899999999999999999999999999999999887654
No 53
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.94 E-value=7.9e-27 Score=226.57 Aligned_cols=170 Identities=25% Similarity=0.425 Sum_probs=113.9
Q ss_pred ccccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcC--CCCCccCCCcceeEEEEEEEECCe--EE
Q psy3029 80 LVSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGK--MFSHHISPTIGASFFTAKINVGEN--KV 155 (617)
Q Consensus 80 ~~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~--~~~~~~~~t~g~~~~~~~i~~~~~--~~ 155 (617)
+....+||+++|+ +|||||||+++|++. .+...+.+|++.++....+.+++. .+
T Consensus 16 ~~~~~~~i~v~G~----------------------~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 73 (208)
T 2yc2_C 16 TATLRCKVAVVGE----------------------ATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSV 73 (208)
T ss_dssp SEEEEEEEEEC--------------------------------------------------------CEEEECTTSSEEE
T ss_pred ccccceEEEEECC----------------------CCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEE
Confidence 4456789999999 999999999999998 777788899998888888888876 89
Q ss_pred EEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC---CCCeEEEEEECCCCCC-ccccCH
Q psy3029 156 KLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD---EPLVLCVVGNKTDLES-SREVNR 231 (617)
Q Consensus 156 ~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~---~~iPvIlVgNK~DL~~-~~~v~~ 231 (617)
.+.||||+|++++..++..+++++|++|+|||++++.+|..+..|+..+..... ..+|++||+||+|+.. .+.+..
T Consensus 74 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~ 153 (208)
T 2yc2_C 74 ELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRL 153 (208)
T ss_dssp EEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCH
T ss_pred EEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCH
Confidence 999999999999999999999999999999999999999999999999988765 5689999999999987 677888
Q ss_pred HHHHHHHHhcCCeEEEEcCCC-CCCHHHHHHHHHHHHHHhh
Q psy3029 232 EEAFHYSKSIGGTYYETSALQ-DQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 232 ~e~~~~~~~~g~~~~evSAkt-g~gI~eLf~~I~~~l~~~~ 271 (617)
+++..+++.++++++++||++ |.||+++|++|.+.+....
T Consensus 154 ~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 154 DMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp HHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence 889999999999999999999 9999999999999886554
No 54
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.94 E-value=5.4e-26 Score=211.86 Aligned_cols=153 Identities=31% Similarity=0.519 Sum_probs=137.7
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+++.+...+.++.+.. ....+.+++..+.+.+|||+|++++..++..+++++|++++|||++++.++
T Consensus 12 ~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 90 (167)
T 1kao_A 12 GGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSF 90 (167)
T ss_dssp TTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHH
Confidence 9999999999999998888888888755 466777888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
..+..|+..+..... ..+|+++|+||+|+..++++..+++..++..++++++++||++|.|++++|++|.+.+.
T Consensus 91 ~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 91 QDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence 999999988876543 46899999999999877778888888999999999999999999999999999988764
No 55
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=8.5e-26 Score=218.41 Aligned_cols=167 Identities=28% Similarity=0.466 Sum_probs=147.0
Q ss_pred ccccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEE
Q psy3029 80 LVSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQV 159 (617)
Q Consensus 80 ~~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i 159 (617)
.....+||+++|+ +|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+
T Consensus 24 ~~~~~~ki~v~G~----------------------~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l 80 (196)
T 2atv_A 24 AKSAEVKLAIFGR----------------------AGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEI 80 (196)
T ss_dssp ---CCEEEEEECC----------------------TTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEE
T ss_pred CCCCceEEEEECC----------------------CCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEE
Confidence 3456689999999 99999999999999998888889988764 556778888999999
Q ss_pred EecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHH
Q psy3029 160 WDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYS 238 (617)
Q Consensus 160 ~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~ 238 (617)
|||+|+++ ..++..+++++|++|+|||++++.+|+.+..|+..+.... ...+|++||+||+|+...+.+..+++..++
T Consensus 81 ~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~ 159 (196)
T 2atv_A 81 LDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA 159 (196)
T ss_dssp EECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred EECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHH
Confidence 99999988 7788899999999999999999999999999999887753 346899999999999877778888899999
Q ss_pred HhcCCeEEEEcCCCCC-CHHHHHHHHHHHHHHh
Q psy3029 239 KSIGGTYYETSALQDQ-GIEDVFLNVSKGLICL 270 (617)
Q Consensus 239 ~~~g~~~~evSAktg~-gI~eLf~~I~~~l~~~ 270 (617)
+.++++++++||++|. ||+++|++|.+.+.+.
T Consensus 160 ~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 160 TELACAFYECSACTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp HHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhh
Confidence 9999999999999999 9999999999988654
No 56
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=1e-25 Score=221.98 Aligned_cols=164 Identities=21% Similarity=0.314 Sum_probs=139.3
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCC--CCccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMF--SHHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~--~~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
..+||+|+|+ +|||||||+++|++... ... .+++|.+++.+.+.+++..+.+.+|
T Consensus 36 ~~~kVvlvG~----------------------~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~ 92 (211)
T 2g3y_A 36 TYYRVVLIGE----------------------QGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILL 92 (211)
T ss_dssp CEEEEEEECC----------------------TTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEE
T ss_pred CceEEEEECC----------------------CCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEe
Confidence 4579999999 99999999999996432 333 3567888888888899999999999
Q ss_pred ecCCccc-ccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHH
Q psy3029 161 DTAGQER-FRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYS 238 (617)
Q Consensus 161 Dt~G~e~-~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~ 238 (617)
||+|.+. +..+...|++.+|++|+|||++++.+|+.+..|+..+.+.. ..++|+|||+||+||...+.+..+++..++
T Consensus 93 Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a 172 (211)
T 2g3y_A 93 DMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACA 172 (211)
T ss_dssp CCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred ecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHH
Confidence 9999876 45566778889999999999999999999999998887642 245899999999999877778888888889
Q ss_pred HhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 239 KSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 239 ~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
..++++|++|||++|.||+++|++|++.+..
T Consensus 173 ~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 173 VVFDCKFIETSAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp HHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998754
No 57
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.94 E-value=1.7e-25 Score=216.90 Aligned_cols=167 Identities=32% Similarity=0.493 Sum_probs=138.8
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
....+||+++|+ +|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+|
T Consensus 17 ~~~~~ki~~~G~----------------------~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~ 73 (201)
T 2q3h_A 17 EGRGVKCVLVGD----------------------GAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLC 73 (201)
T ss_dssp ---CEEEEEECS----------------------TTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEE
T ss_pred CCcceEEEEECC----------------------CCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEE
Confidence 345689999999 99999999999999988888889988664 5567778888999999
Q ss_pred ecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCeEEEEEECCCCCC------------cc
Q psy3029 161 DTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDEPLVLCVVGNKTDLES------------SR 227 (617)
Q Consensus 161 Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~------------~~ 227 (617)
||+|+++|..++..++.++|++|+|||++++.+|..+. .|+..+....+ .+|++||+||+|+.. .+
T Consensus 74 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 152 (201)
T 2q3h_A 74 DTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEK 152 (201)
T ss_dssp ECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred ECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccc
Confidence 99999999999999999999999999999999999997 79998887664 589999999999965 25
Q ss_pred ccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 228 EVNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 228 ~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
.+..+++..++..+++ ++++|||++|.||+++|++|.+.+....
T Consensus 153 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 153 PVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp CCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 5677888899999898 9999999999999999999999886543
No 58
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.94 E-value=1.7e-25 Score=213.01 Aligned_cols=166 Identities=30% Similarity=0.490 Sum_probs=147.8
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.||||
T Consensus 17 ~~~ki~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt 73 (187)
T 2a9k_A 17 ALHKVIMVGS----------------------GGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDT 73 (187)
T ss_dssp CEEEEEEECS----------------------TTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEEC
T ss_pred CceEEEEECC----------------------CCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEEC
Confidence 3478888888 99999999999999988888888888764 455677888899999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
+|++++..++..+++++|++|+|||++++.++..+..|+..+..... ..+|++||+||+|+...+.+..+++..+++.+
T Consensus 74 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 153 (187)
T 2a9k_A 74 AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW 153 (187)
T ss_dssp CCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHT
T ss_pred CCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999877654 36899999999999877778888899999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
+++++++||+++.||+++|++|.+.+....
T Consensus 154 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 154 NVNYVETSAKTRANVDKVFFDLMREIRARK 183 (187)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999886543
No 59
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.94 E-value=2.7e-25 Score=215.66 Aligned_cols=166 Identities=30% Similarity=0.490 Sum_probs=149.3
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..++|+|+|+ +|||||||+++|++..+...+.+|.+..+ ...+.+++..+.+.||||
T Consensus 13 ~~~ki~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt 69 (206)
T 2bov_A 13 ALHKVIMVGS----------------------GGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDT 69 (206)
T ss_dssp CEEEEEEECS----------------------TTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEEC
T ss_pred ceEEEEEECC----------------------CCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcC
Confidence 4579999999 99999999999999988888888888765 456677888899999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
+|++++..++..+++.+|++|+|||++++.+|..+..|+..+..... ..+|++||+||+|+...+++..+++..++..+
T Consensus 70 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 149 (206)
T 2bov_A 70 AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW 149 (206)
T ss_dssp CCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHH
T ss_pred CChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999887653 46899999999999877778888899999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
+++++++||++|.||+++|++|.+.+....
T Consensus 150 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 150 NVNYVETSAKTRANVDKVFFDLMREIRARK 179 (206)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999887653
No 60
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.94 E-value=7.8e-26 Score=216.48 Aligned_cols=163 Identities=26% Similarity=0.538 Sum_probs=143.2
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ +|||||||+++|++..+...+.+|++..+ ...+.+++..+.+.+||
T Consensus 5 ~~~~ki~v~G~----------------------~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D 61 (184)
T 1m7b_A 5 NVKCKIVVVGD----------------------SQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWD 61 (184)
T ss_dssp -CEEEEEEEES----------------------TTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEE
T ss_pred ceEEEEEEECC----------------------CCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEE
Confidence 34578999999 99999999999999998888889998775 45667788889999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCeEEEEEECCCCCCc------------cc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAI-KTWVKELKRNVDEPLVLCVVGNKTDLESS------------RE 228 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l-~~~l~~i~~~~~~~iPvIlVgNK~DL~~~------------~~ 228 (617)
|+|+++|..++..+++++|++|+|||++++.+|..+ ..|+..+....+ .+|++||+||+|+..+ +.
T Consensus 62 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 140 (184)
T 1m7b_A 62 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTP 140 (184)
T ss_dssp ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCC
T ss_pred CCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEcchhhcchhhHhhhhhcccCC
Confidence 999999999999999999999999999999999998 689988877654 4799999999999642 55
Q ss_pred cCHHHHHHHHHhcC-CeEEEEcCC-CCCCHHHHHHHHHHHHH
Q psy3029 229 VNREEAFHYSKSIG-GTYYETSAL-QDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 229 v~~~e~~~~~~~~g-~~~~evSAk-tg~gI~eLf~~I~~~l~ 268 (617)
+..+++..+++.++ +++++|||+ ++.||+++|+.|.+.+.
T Consensus 141 v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 141 VSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp CCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence 77888889999888 699999999 68999999999998775
No 61
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.94 E-value=1.9e-25 Score=217.13 Aligned_cols=166 Identities=37% Similarity=0.642 Sum_probs=148.2
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+|+|+ +|||||||+++|++..+...+.++++.++....+.+++..+.+.||||
T Consensus 7 ~~~ki~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt 64 (207)
T 1vg8_A 7 VLLKVIILGD----------------------SGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT 64 (207)
T ss_dssp CEEEEEEECC----------------------TTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEE
T ss_pred cceEEEEECc----------------------CCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeC
Confidence 4578999999 999999999999999988889999999988888888888899999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC----CCCeEEEEEECCCCCCccccCHHHHHHHH
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD----EPLVLCVVGNKTDLESSREVNREEAFHYS 238 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~----~~iPvIlVgNK~DL~~~~~v~~~e~~~~~ 238 (617)
+|++++..++..+++++|++|+|||++++.++..+..|+..+..... ..+|++||+||+|+. .+.+..+++..++
T Consensus 65 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~ 143 (207)
T 1vg8_A 65 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWC 143 (207)
T ss_dssp CSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHH
T ss_pred CCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHH
Confidence 99999999999999999999999999999999999999998876542 357999999999997 4556777788888
Q ss_pred H-hcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 239 K-SIGGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 239 ~-~~g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
. ..+++++++||++|.||+++|++|.+.+....
T Consensus 144 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 144 YSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177 (207)
T ss_dssp HHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 7 67789999999999999999999999887654
No 62
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.94 E-value=8.2e-26 Score=221.12 Aligned_cols=166 Identities=31% Similarity=0.523 Sum_probs=144.3
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
....+||+++|+ +|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+|
T Consensus 6 ~~~~~ki~i~G~----------------------~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~ 62 (212)
T 2j0v_A 6 VSKFIKCVTVGD----------------------GAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLW 62 (212)
T ss_dssp CCCEEEEEEEES----------------------TTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEE
T ss_pred cCceEEEEEECC----------------------CCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEE
Confidence 345689999999 99999999999999998888889998765 4566778888999999
Q ss_pred ecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCccc--------cCH
Q psy3029 161 DTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDEPLVLCVVGNKTDLESSRE--------VNR 231 (617)
Q Consensus 161 Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~--------v~~ 231 (617)
||+|+++|..++..+++++|++|+|||++++.+|..+. .|+..+....+ .+|++||+||+|+..++. +..
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~ 141 (212)
T 2j0v_A 63 DTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITS 141 (212)
T ss_dssp CCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCH
T ss_pred ECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCH
Confidence 99999999999999999999999999999999999986 79999887654 579999999999966543 367
Q ss_pred HHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 232 EEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 232 ~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
+++..++..+++ +++++||++|.||+++|++|++.+...
T Consensus 142 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 142 TQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 788889999996 999999999999999999999888643
No 63
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.94 E-value=1e-25 Score=213.61 Aligned_cols=167 Identities=35% Similarity=0.603 Sum_probs=133.4
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEEC-CeEEEEEEE
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG-ENKVKLQVW 160 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~-~~~~~l~i~ 160 (617)
...++|+++|. +|||||||+++|++..+...+.++++.++....+.++ +..+.+.+|
T Consensus 6 ~~~~~i~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 63 (182)
T 1ky3_A 6 KNILKVIILGD----------------------SGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVW 63 (182)
T ss_dssp -CEEEEEEECC----------------------TTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEE
T ss_pred CceEEEEEECC----------------------CCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEE
Confidence 34578999999 9999999999999999888888999998888888776 556899999
Q ss_pred ecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC----CCCeEEEEEECCCCCC-ccccCHHHHH
Q psy3029 161 DTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD----EPLVLCVVGNKTDLES-SREVNREEAF 235 (617)
Q Consensus 161 Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~----~~iPvIlVgNK~DL~~-~~~v~~~e~~ 235 (617)
||+|++++..++..+++++|++|+|||++++.++..+..|+..+..... ..+|++||+||+|+.. .+.+..+++.
T Consensus 64 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~ 143 (182)
T 1ky3_A 64 DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQ 143 (182)
T ss_dssp CCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHH
T ss_pred ECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHH
Confidence 9999999999999999999999999999999999999999998876542 5689999999999953 3456777888
Q ss_pred HHHH-hcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 236 HYSK-SIGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 236 ~~~~-~~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
.++. ..+++++++||++|.||+++|++|.+.+...
T Consensus 144 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 144 ELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp HHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 8887 5667999999999999999999999988654
No 64
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.94 E-value=1e-25 Score=220.43 Aligned_cols=164 Identities=26% Similarity=0.532 Sum_probs=144.4
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ +|||||||+++|++..+...+.+|++.++ .+.+.+++..+.+.|||
T Consensus 26 ~~~~ki~vvG~----------------------~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D 82 (205)
T 1gwn_A 26 NVKCKIVVVGD----------------------SQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWD 82 (205)
T ss_dssp -CEEEEEEEES----------------------TTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEE
T ss_pred ceeeEEEEECC----------------------CCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEe
Confidence 45689999999 99999999999999998888889998775 45667788889999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCeEEEEEECCCCCCc------------cc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAI-KTWVKELKRNVDEPLVLCVVGNKTDLESS------------RE 228 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l-~~~l~~i~~~~~~~iPvIlVgNK~DL~~~------------~~ 228 (617)
|+|+++|..++..+++++|++|+|||++++.+|..+ ..|+..+....+ .+|++||+||+|+..+ +.
T Consensus 83 t~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 161 (205)
T 1gwn_A 83 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTP 161 (205)
T ss_dssp ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCC
T ss_pred CCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCC
Confidence 999999999999999999999999999999999998 689998887654 4799999999999642 45
Q ss_pred cCHHHHHHHHHhcC-CeEEEEcCC-CCCCHHHHHHHHHHHHHH
Q psy3029 229 VNREEAFHYSKSIG-GTYYETSAL-QDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 229 v~~~e~~~~~~~~g-~~~~evSAk-tg~gI~eLf~~I~~~l~~ 269 (617)
+..+++..+++.++ +++++|||+ ++.||+++|+.|++.+..
T Consensus 162 v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 162 VSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 77888889999888 699999999 689999999999987754
No 65
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.93 E-value=3.1e-25 Score=215.69 Aligned_cols=165 Identities=28% Similarity=0.519 Sum_probs=145.8
Q ss_pred ccccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEE
Q psy3029 80 LVSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQV 159 (617)
Q Consensus 80 ~~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i 159 (617)
++...+||+++|+ +|||||||+++|+++.+...+.++++.++.. .+.+++..+.+.+
T Consensus 21 m~~~~~ki~vvG~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i 77 (201)
T 2gco_A 21 MAAIRKKLVIVGD----------------------GACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELAL 77 (201)
T ss_dssp -CCEEEEEEEEES----------------------TTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEE
T ss_pred CcccceEEEEECC----------------------CCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEE
Confidence 4566789999999 9999999999999999888888999887653 4677888899999
Q ss_pred EecCCcccccccchhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCeEEEEEECCCCCCc------------
Q psy3029 160 WDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAI-KTWVKELKRNVDEPLVLCVVGNKTDLESS------------ 226 (617)
Q Consensus 160 ~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l-~~~l~~i~~~~~~~iPvIlVgNK~DL~~~------------ 226 (617)
|||+|++++..++..+++++|++|+|||++++.+|..+ ..|+..+....+ .+|++||+||+|+...
T Consensus 78 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~ 156 (201)
T 2gco_A 78 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRELAKMKQ 156 (201)
T ss_dssp ECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCHHHHHHHHTTTC
T ss_pred EECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCccchhhhccccc
Confidence 99999999999999999999999999999999999998 678888877654 4799999999999765
Q ss_pred cccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 227 REVNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 227 ~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
+.+..+++..++..+++ +++++||++|.||+++|++|.+.+.
T Consensus 157 ~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 157 EPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 45677888899999998 8999999999999999999998764
No 66
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.93 E-value=2.6e-25 Score=211.72 Aligned_cols=162 Identities=28% Similarity=0.565 Sum_probs=142.9
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+|||
T Consensus 4 ~~~~i~~~G~----------------------~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt 60 (186)
T 1mh1_A 4 QAIKCVVVGD----------------------GAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDT 60 (186)
T ss_dssp EEEEEEEECS----------------------TTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECC
T ss_pred cEEEEEEECC----------------------CCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEEC
Confidence 3468888888 99999999999999988888888887664 556678889999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCc------------ccc
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDEPLVLCVVGNKTDLESS------------REV 229 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~------------~~v 229 (617)
+|++++..++..+++++|++|+|||++++.+|..+. .|+..+....+ .+|++||+||+|+... +.+
T Consensus 61 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 139 (186)
T 1mh1_A 61 AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 139 (186)
T ss_dssp CCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCC
T ss_pred CCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccC
Confidence 999999999999999999999999999999999987 79988887655 5799999999998653 456
Q ss_pred CHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 230 NREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 230 ~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
..+++..+++.+++ +++++||++|.||+++|++|.+.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 140 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp CHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 77888889999997 9999999999999999999998774
No 67
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.93 E-value=1.4e-25 Score=220.39 Aligned_cols=167 Identities=28% Similarity=0.452 Sum_probs=146.4
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECC-eEEEEEEE
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE-NKVKLQVW 160 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~-~~~~l~i~ 160 (617)
...+||+++|+ +|||||||+++|+++.+...+.++.+.++....+...+ ..+.+.+|
T Consensus 9 ~~~~ki~vvG~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~ 66 (218)
T 4djt_A 9 ELTYKICLIGD----------------------GGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVW 66 (218)
T ss_dssp -CEEEEEEECC----------------------TTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEE
T ss_pred cCccEEEEECC----------------------CCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEE
Confidence 35689999999 99999999999999988888889999887776665544 44899999
Q ss_pred ecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHh
Q psy3029 161 DTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKS 240 (617)
Q Consensus 161 Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~ 240 (617)
||+|++++..++..++.++|++|+|||++++.++..+..|+..+.......+|++||+||+|+...+.+..+++..++..
T Consensus 67 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (218)
T 4djt_A 67 DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKG 146 (218)
T ss_dssp EECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTT
T ss_pred ecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887766689999999999987778888888899999
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 241 IGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 241 ~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
.+++++++||++|.||+++|++|.+.+...
T Consensus 147 ~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 147 KNYEYFEISAKTAHNFGLPFLHLARIFTGR 176 (218)
T ss_dssp CCCEEEEEBTTTTBTTTHHHHHHHHHHHCC
T ss_pred cCCcEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999988654
No 68
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.93 E-value=9.1e-25 Score=208.51 Aligned_cols=165 Identities=30% Similarity=0.498 Sum_probs=143.1
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|++..+...+.++.+. .....+.+++..+.+.+|||
T Consensus 3 ~~~ki~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt 59 (189)
T 4dsu_A 3 TEYKLVVVGA----------------------DGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDT 59 (189)
T ss_dssp EEEEEEEECC----------------------TTSSHHHHHHHHHHSSCCCCCCTTCCE-EEEEEEEETTEEEEEEEEEC
T ss_pred cEEEEEEECC----------------------CCCCHHHHHHHHHhCCCCCCCCCCchh-eEEEEEEECCcEEEEEEEEC
Confidence 4578999998 999999999999999888888888754 45567778889999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
+|++++..++..+++.+|++++|||++++.+|..+..|+..+.... ...+|++||+||+|+.. +.+..+++..++..+
T Consensus 60 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~ 138 (189)
T 4dsu_A 60 AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSY 138 (189)
T ss_dssp CCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999987754 34689999999999964 556778888999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
+++++++||++|.|++++|++|.+.+....
T Consensus 139 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 168 (189)
T 4dsu_A 139 GIPFIETSAKTRQGVDDAFYTLVREIRKHK 168 (189)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999887654
No 69
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=2e-25 Score=209.27 Aligned_cols=162 Identities=27% Similarity=0.434 Sum_probs=141.8
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
+.+||+++|+ +|||||||+++|+++.+...+.++.+.++ ...+..++..+.+.+|||
T Consensus 2 ~~~~i~v~G~----------------------~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt 58 (172)
T 2erx_A 2 NDYRVAVFGA----------------------GGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDT 58 (172)
T ss_dssp CEEEEEEECC----------------------TTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEEC
T ss_pred CceEEEEECC----------------------CCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEEC
Confidence 3578899998 99999999999999988778888888664 445667888899999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC--CCCeEEEEEECCCCCCccccCHHHHHHHHHh
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD--EPLVLCVVGNKTDLESSREVNREEAFHYSKS 240 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~--~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~ 240 (617)
+|++++..++..+++.+|++|+|||++++.+++.+..|+..+.+... ..+|++||+||+|+...+++..++...++..
T Consensus 59 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~ 138 (172)
T 2erx_A 59 TGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALART 138 (172)
T ss_dssp CSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888776532 3579999999999987777888888889999
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 241 IGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 241 ~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
++++++++||++|.|++++|++|.+.+
T Consensus 139 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 139 WKCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp HTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred hCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 999999999999999999999998754
No 70
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.93 E-value=5.5e-26 Score=215.89 Aligned_cols=163 Identities=29% Similarity=0.530 Sum_probs=126.1
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ +|||||||+++|+++.+...+.+|++..+. ..+.+++..+.+.+||
T Consensus 6 ~~~~ki~v~G~----------------------~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D 62 (182)
T 3bwd_D 6 SRFIKCVTVGD----------------------GAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWD 62 (182)
T ss_dssp -CCCEEEEECS----------------------TTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEEC
T ss_pred CceEEEEEECC----------------------CCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEE
Confidence 44578889988 999999999999998888888888876543 3344566778899999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCccc----------cC
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDEPLVLCVVGNKTDLESSRE----------VN 230 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~----------v~ 230 (617)
|+|++++..++..+++++|++|+|||++++.+|+.+. .|+..+....+ .+|++||+||+|+...+. +.
T Consensus 63 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~ 141 (182)
T 3bwd_D 63 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPIT 141 (182)
T ss_dssp CCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCC
T ss_pred CCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCC
Confidence 9999999999999999999999999999999999997 69998887654 579999999999966544 36
Q ss_pred HHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 231 REEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 231 ~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
.+++..+++.+++ +++++||++|.||+++|++|.+.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 142 TVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 7788889999997 9999999999999999999988763
No 71
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=7.6e-25 Score=213.91 Aligned_cols=166 Identities=27% Similarity=0.486 Sum_probs=139.2
Q ss_pred ccccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEE
Q psy3029 80 LVSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQV 159 (617)
Q Consensus 80 ~~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i 159 (617)
+...++||+++|+ +|||||||+++|+++.+...+.++++.++.. .+.+++..+.+.|
T Consensus 21 ~~~~~~ki~vvG~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i 77 (207)
T 2fv8_A 21 QSMIRKKLVVVGD----------------------GACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELAL 77 (207)
T ss_dssp GGSEEEEEEEEEC----------------------TTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEE
T ss_pred ccccCcEEEEECc----------------------CCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEE
Confidence 3455689999999 9999999999999999888888888877544 4677888899999
Q ss_pred EecCCcccccccchhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCeEEEEEECCCCCCc------------
Q psy3029 160 WDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAI-KTWVKELKRNVDEPLVLCVVGNKTDLESS------------ 226 (617)
Q Consensus 160 ~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l-~~~l~~i~~~~~~~iPvIlVgNK~DL~~~------------ 226 (617)
|||+|++++..++..+++++|++|+|||++++.+|..+ ..|+..+....+ .+|++||+||+|+...
T Consensus 78 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~ 156 (207)
T 2fv8_A 78 WDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSDEHVRTELARMKQ 156 (207)
T ss_dssp EECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGGGCHHHHHHHHHTTC
T ss_pred EECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhhhccccchhhhhhccc
Confidence 99999999999999999999999999999999999998 678888877653 4799999999999654
Q ss_pred cccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 227 REVNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 227 ~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
+.+..+++..++..+++ +++++||++|.||+++|++|.+.+..
T Consensus 157 ~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 157 EPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 44677788889988888 99999999999999999999988754
No 72
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.93 E-value=4.5e-25 Score=216.92 Aligned_cols=163 Identities=31% Similarity=0.561 Sum_probs=124.3
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.||||
T Consensus 33 ~~~ki~vvG~----------------------~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt 89 (214)
T 2j1l_A 33 RSVKVVLVGD----------------------GGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDT 89 (214)
T ss_dssp CEEEEEEEEC----------------------TTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC
T ss_pred ceEEEEEECc----------------------CCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEEC
Confidence 4589999999 99999999999999988888888887654 556778888999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCcc------------cc
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDEPLVLCVVGNKTDLESSR------------EV 229 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~~------------~v 229 (617)
+|++++..++..+++++|++|+|||++++.+|..+. .|+..+..... .+|++||+||+|+.... .+
T Consensus 90 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 168 (214)
T 2j1l_A 90 AGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPV 168 (214)
T ss_dssp ---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEEEEECGGGGSCHHHHHHHHHTTCCCC
T ss_pred CCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhhccchhhhhhcccccCcc
Confidence 999999999999999999999999999999999986 79998877653 47999999999997643 56
Q ss_pred CHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 230 NREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 230 ~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
..+++..+++.+++ +++++||++|.||+++|++|.+.+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 169 TYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp CHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 77788899999998 99999999999999999999988865
No 73
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.93 E-value=1.2e-24 Score=210.53 Aligned_cols=164 Identities=21% Similarity=0.326 Sum_probs=136.4
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCC--CCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKM--FSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~--~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
.+||+++|+ +|||||||+++|++.. +... .+++|.++..+.+.+++..+.+.+||
T Consensus 6 ~~kv~lvG~----------------------~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~D 62 (192)
T 2cjw_A 6 YYRVVLIGE----------------------QGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLD 62 (192)
T ss_dssp EEEEEEECS----------------------TTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEEC
T ss_pred eEEEEEECC----------------------CCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEE
Confidence 468999999 9999999999999633 3333 34578888888888999999999999
Q ss_pred cCCccc-ccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHH
Q psy3029 162 TAGQER-FRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSK 239 (617)
Q Consensus 162 t~G~e~-~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~ 239 (617)
|+|.+. +..+...+++.+|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+..++.+..+++..++.
T Consensus 63 t~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~ 142 (192)
T 2cjw_A 63 MWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAV 142 (192)
T ss_dssp CCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred eccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHH
Confidence 999876 55677888899999999999999999999999988877653 3458999999999997777788888888888
Q ss_pred hcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 240 SIGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 240 ~~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
.++++|++|||++|.||+++|++|++.+...
T Consensus 143 ~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 143 VFDXKFIETSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp HTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HhCCceEEeccccCCCHHHHHHHHHHHHHhh
Confidence 8899999999999999999999999988543
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.93 E-value=1.8e-24 Score=201.07 Aligned_cols=152 Identities=34% Similarity=0.559 Sum_probs=134.9
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|++..+...+.++.+.. ....+.+++..+.+.+|||+|++++..++..++..+|++++|||++++.++
T Consensus 12 ~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 90 (166)
T 2ce2_X 12 GGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90 (166)
T ss_dssp TTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHH
Confidence 9999999999999998877788887755 356677788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
..+..|+..+..... .++|+++|+||+|+.. +.+..+++.++++.++++++++||++|.|+++++++|.+.+.
T Consensus 91 ~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 91 EDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp HHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 999999998877643 3589999999999876 456677888999999999999999999999999999998764
No 75
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.93 E-value=1.9e-24 Score=207.40 Aligned_cols=164 Identities=32% Similarity=0.531 Sum_probs=134.3
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||
T Consensus 20 ~~~ki~vvG~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt 76 (190)
T 3con_A 20 TEYKLVVVGA----------------------GGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDT 76 (190)
T ss_dssp EEEEEEEECS----------------------TTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEEC
T ss_pred ceeEEEEECc----------------------CCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEEC
Confidence 4578999998 99999999999999888777888877654 456777888899999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~-~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
+|++++..++..+++.+|++++|||++++.++..+..|+..+..... ..+|++||+||+|+.. +.+..+++.++++.+
T Consensus 77 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~ 155 (190)
T 3con_A 77 AGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSY 155 (190)
T ss_dssp CC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999998877543 4589999999999975 556778888999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
+++++++||+++.|++++|++|.+.+...
T Consensus 156 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 156 GIPFIETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988654
No 76
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.93 E-value=1.1e-25 Score=216.15 Aligned_cols=165 Identities=16% Similarity=0.172 Sum_probs=137.3
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCc-----------cCCCcceeEEEEEE-
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHH-----------ISPTIGASFFTAKI- 148 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~-----------~~~t~g~~~~~~~i- 148 (617)
....+||+++|+ +|||||||++.+.+ .+... +.+|++.++..+.+
T Consensus 11 ~~~~~ki~vvG~----------------------~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 67 (198)
T 3t1o_A 11 REINFKIVYYGP----------------------GLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIG 67 (198)
T ss_dssp TEEEEEEEEECS----------------------TTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCC
T ss_pred cccccEEEEECC----------------------CCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccc
Confidence 345689999999 99999999966654 44444 34577766665555
Q ss_pred EECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCC------ChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCC
Q psy3029 149 NVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDIT------QYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTD 222 (617)
Q Consensus 149 ~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis------~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~D 222 (617)
.+++..+.+.+|||+|++++..++..+++++|++|+|||++ +..+|..+.+|+..+.. ...++|++||+||+|
T Consensus 68 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~D 146 (198)
T 3t1o_A 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRD 146 (198)
T ss_dssp CSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTT
T ss_pred cccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchh
Confidence 56778899999999999999999999999999999999999 55678888889888743 234589999999999
Q ss_pred CCCccccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 223 LESSREVNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 223 L~~~~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
+... +..+++.++++.+++ +++++||++|.||+++|++|.+.+....
T Consensus 147 l~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 147 LPDA--LPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp STTC--CCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred cccc--cCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 9654 677888999999999 9999999999999999999999887654
No 77
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.93 E-value=4.8e-27 Score=227.96 Aligned_cols=165 Identities=34% Similarity=0.636 Sum_probs=140.8
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ +|||||||+++|+++.+...+.++++.++....+.+++..+.+.|||
T Consensus 31 ~~~~ki~vvG~----------------------~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 88 (199)
T 3l0i_B 31 DYLFKLLLIGD----------------------SGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 88 (199)
T ss_dssp SEEEEEEEECC----------------------TTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEEC
T ss_pred CcceEEEEECC----------------------CCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEE
Confidence 34589999999 99999999999999998888889999998888898999999999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
|+|++++..++..+++++|++|+|||++++.+|..+..|+..+.......+|++||+||+|+...+.+..+++..++..+
T Consensus 89 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~ 168 (199)
T 3l0i_B 89 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL 168 (199)
T ss_dssp CTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT
T ss_pred CCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999998877667899999999999877777666778899999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
+++++++||++|.||+++|++|.+.+.
T Consensus 169 ~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 169 GIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp TCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999977653
No 78
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.92 E-value=6.2e-25 Score=211.91 Aligned_cols=165 Identities=19% Similarity=0.294 Sum_probs=130.4
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCC-ccCCCcceeEEEEEEEECCeEEEEEE
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSH-HISPTIGASFFTAKINVGENKVKLQV 159 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~-~~~~t~g~~~~~~~i~~~~~~~~l~i 159 (617)
.....||+|+|+ +|||||||+++|++..+.. .+.+|+|..+.. + +...+.+.|
T Consensus 14 ~~~~~ki~v~G~----------------------~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i 67 (199)
T 4bas_A 14 SKTKLQVVMCGL----------------------DNSGKTTIINQVKPAQSSSKHITATVGYNVET--F--EKGRVAFTV 67 (199)
T ss_dssp --CEEEEEEECC----------------------TTSCHHHHHHHHSCCC----CCCCCSSEEEEE--E--EETTEEEEE
T ss_pred CCCCcEEEEECC----------------------CCCCHHHHHHHHhcCCCcccccccccceeEEE--E--EeCCEEEEE
Confidence 456679999999 9999999999999999877 788999855433 3 235578999
Q ss_pred EecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC--------CCCeEEEEEECCCCCCccc---
Q psy3029 160 WDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD--------EPLVLCVVGNKTDLESSRE--- 228 (617)
Q Consensus 160 ~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~--------~~iPvIlVgNK~DL~~~~~--- 228 (617)
|||+|++++..++..+++++|++|+|||++++.+|..+..|+..+..... ..+|++||+||+|+.....
T Consensus 68 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~ 147 (199)
T 4bas_A 68 FDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAE 147 (199)
T ss_dssp EEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHH
T ss_pred EECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHH
Confidence 99999999999999999999999999999999999999999988765421 2579999999999976532
Q ss_pred cCHHHHHH-HHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 229 VNREEAFH-YSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 229 v~~~e~~~-~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
+....... +++..++++++|||++|.||+++|++|.+.+....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 148 LVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp HHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred HHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 11111111 12456779999999999999999999999887653
No 79
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.92 E-value=9.1e-25 Score=213.13 Aligned_cols=162 Identities=28% Similarity=0.557 Sum_probs=139.4
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ +|||||||+++|+++.+...+.++.+.. ....+.+++..+.+.+||
T Consensus 28 ~~~~ki~vvG~----------------------~~~GKSsLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D 84 (204)
T 4gzl_A 28 GQAIKCVVVGD----------------------GAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWD 84 (204)
T ss_dssp --CEEEEEEES----------------------TTSSHHHHHHHHHHSCCCC-CCCCSEEE-EEEEEECC-CEEEEEEEE
T ss_pred CCeEEEEEECc----------------------CCCCHHHHHHHHHhCCCCCCcCCeecce-eEEEEEECCEEEEEEEEE
Confidence 34589999999 9999999999999998888888888654 456667788889999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCccc------------
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDEPLVLCVVGNKTDLESSRE------------ 228 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~------------ 228 (617)
|+|++++..++..+++++|++|+|||++++.+|..+. .|+..+.... .++|++||+||+|+.....
T Consensus 85 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 163 (204)
T 4gzl_A 85 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTP 163 (204)
T ss_dssp ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCC
T ss_pred CCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhcccccc
Confidence 9999999999999999999999999999999999997 7998888766 4579999999999965433
Q ss_pred cCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 229 VNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 229 v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~~l 267 (617)
+..+++..+++.+++ +++++||++|.||+++|++|.+.+
T Consensus 164 v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 164 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 677788889999887 699999999999999999998743
No 80
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.92 E-value=2.7e-25 Score=219.16 Aligned_cols=164 Identities=27% Similarity=0.517 Sum_probs=146.4
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ +|||||||+++|+.+.+...+.+++|.++....+.+++..+.+.|||
T Consensus 13 ~~~~ki~v~G~----------------------~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 70 (221)
T 3gj0_A 13 QVQFKLVLVGD----------------------GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWD 70 (221)
T ss_dssp CCEEEEEEEEC----------------------TTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEE
T ss_pred ccceEEEEECC----------------------CCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEe
Confidence 45589999999 99999999999887777788899999999999999999999999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSI 241 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~ 241 (617)
|+|++++..++..+++++|++|+|||++++.+|..+..|+..+..... ++|++||+||+|+..... . .+...+++..
T Consensus 71 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~ 147 (221)
T 3gj0_A 71 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV-K-AKSIVFHRKK 147 (221)
T ss_dssp ECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSS-C-GGGCCHHHHH
T ss_pred CCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccc-c-HHHHHHHHHc
Confidence 999999999999999999999999999999999999999999988764 579999999999975433 2 2455778888
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
+++++++||++|.||+++|++|.+.+...
T Consensus 148 ~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 148 NLQYYDISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp TCEEEECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999988653
No 81
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.8e-24 Score=208.59 Aligned_cols=162 Identities=27% Similarity=0.402 Sum_probs=141.4
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..++|+++|+ +|||||||+++|+++.+...+.++.+.++ ...+.+++..+.+.+|||
T Consensus 7 ~~~ki~vvG~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt 63 (199)
T 2gf0_A 7 NDYRVVVFGA----------------------GGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDT 63 (199)
T ss_dssp CCEEEEEEEC----------------------TTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEEC
T ss_pred CeeEEEEECC----------------------CCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeC
Confidence 4579999999 99999999999999988878888888664 455667888899999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC--CCCeEEEEEECCCCCCccccCHHHHHHHHHh
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD--EPLVLCVVGNKTDLESSREVNREEAFHYSKS 240 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~--~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~ 240 (617)
+|++++..++..++.++|++|+|||++++.++..+..|+..+..... ..+|++||+||+|+.. +.+..+++..++..
T Consensus 64 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~ 142 (199)
T 2gf0_A 64 TGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQE 142 (199)
T ss_dssp CGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHH
T ss_pred CChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999888877766432 3579999999999965 55677888889999
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 241 IGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 241 ~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
++++++++||++|.||+++|++|.+.+.
T Consensus 143 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 143 WKCAFMETSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp HTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred hCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999988653
No 82
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.91 E-value=3.3e-24 Score=201.27 Aligned_cols=158 Identities=23% Similarity=0.322 Sum_probs=126.8
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..++|+++|+ +|||||||+++|+++.+. .+.+|++... ..+.++ .+.+.+|||
T Consensus 6 ~~~~i~v~G~----------------------~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~Dt 58 (171)
T 1upt_A 6 REMRILILGL----------------------DGAGKTTILYRLQVGEVV-TTIPTIGFNV--ETVTYK--NLKFQVWDL 58 (171)
T ss_dssp SCEEEEEECS----------------------TTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEEET--TEEEEEEEE
T ss_pred CccEEEEECC----------------------CCCCHHHHHHHHhcCCCC-CcCCcCccce--EEEEEC--CEEEEEEEC
Confidence 3578888888 999999999999988864 5678887554 344444 578999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHH-----H
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAF-----H 236 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~-----~ 236 (617)
+|++++..++..+++++|++|+|||++++.+|..+..|+..+.... ...+|++||+||+|+..... .++.. .
T Consensus 59 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~ 136 (171)
T 1upt_A 59 GGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLP 136 (171)
T ss_dssp CCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGG
T ss_pred CCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCch
Confidence 9999999999999999999999999999999999999888876542 24579999999999976432 22222 2
Q ss_pred HHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 237 ~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
++...+++++++||++|.|++++|++|.+.+.+
T Consensus 137 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 137 ALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp GCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred hccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 233446689999999999999999999987753
No 83
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.91 E-value=2.7e-23 Score=201.58 Aligned_cols=167 Identities=37% Similarity=0.646 Sum_probs=148.1
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|++..+...+.+++|.++....+.+++..+.+.+||+
T Consensus 4 ~~~kv~lvG~----------------------~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt 61 (199)
T 2f9l_A 4 YLFKVVLIGD----------------------SGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61 (199)
T ss_dssp EEEEEEEESS----------------------TTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEEC
T ss_pred ceEEEEEECc----------------------CCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEEC
Confidence 3478888888 999999999999999888888899999988888999999999999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG 242 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g 242 (617)
+|++++..++..++..++++|+|||+++..++..+..|+..+........|+++|+||+|+...+.+..+++..++...+
T Consensus 62 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~ 141 (199)
T 2f9l_A 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNN 141 (199)
T ss_dssp SSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred CCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999899988876554567999999999998767777788889999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 243 GTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
+.++++||+++.|++++|+.|.+.+....
T Consensus 142 ~~~~d~Sal~~~~i~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 142 LSFIETSALDSTNVEEAFKNILTEIYRIV 170 (199)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887654
No 84
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.91 E-value=1.1e-24 Score=203.23 Aligned_cols=147 Identities=21% Similarity=0.280 Sum_probs=116.4
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|||||||+++|+++.+. .+.||++... ..+.. ..+.+.+|||+|++++..++..+++++|++|+|||++++.+|
T Consensus 9 ~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 83 (164)
T 1r8s_A 9 DAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV 83 (164)
T ss_dssp TTSSHHHHHHHHHHHCSS-CCCCCSSCCE--EEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGH
T ss_pred CCCCHHHHHHHHHcCCcC-cccCcCceeE--EEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHH
Confidence 999999999999988865 4678888543 33333 457899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHH-----HHhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHY-----SKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 195 ~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~-----~~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
..+..|+..+.... ..++|++||+||+|+.... ..++.... +...+++++++||++|.||+++|++|.+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 84 NEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 99999998876532 2457999999999996542 22222221 2223557999999999999999999988764
No 85
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.91 E-value=7.2e-25 Score=210.05 Aligned_cols=163 Identities=20% Similarity=0.332 Sum_probs=124.8
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcC--CCCCccCCCcceeEEEEEEEE---CCeEEEEE
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGK--MFSHHISPTIGASFFTAKINV---GENKVKLQ 158 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~--~~~~~~~~t~g~~~~~~~i~~---~~~~~~l~ 158 (617)
++||+++|+ +|||||||+++|++. .+...+.+|+|.++..+.+.+ ++..+.+.
T Consensus 2 ~~kv~ivG~----------------------~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~ 59 (184)
T 2zej_A 2 RMKLMIVGN----------------------TGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLN 59 (184)
T ss_dssp -CEEEEESC----------------------TTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEE
T ss_pred ceEEEEECC----------------------CCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEE
Confidence 468888888 999999999999984 455667899998887766554 33577899
Q ss_pred EEecCCcccccccchhhhccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccC---HHHH
Q psy3029 159 VWDTAGQERFRSMAPMYYRNANAALLVFDITQY-HSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVN---REEA 234 (617)
Q Consensus 159 i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~-~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~---~~e~ 234 (617)
+|||+|+++|..+++.++++++++++|||++++ .+|..+..|+..+....+ ++|++||+||+|+...+.+. .+..
T Consensus 60 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~ 138 (184)
T 2zej_A 60 VWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDEKQRKACMSKIT 138 (184)
T ss_dssp EEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccchhhHHHHHHHH
Confidence 999999999999999999999999999999997 479999999999877653 47999999999997654432 2334
Q ss_pred HHHHHhcCCe----EEEEcCCCCC-CHHHHHHHHHHHHHH
Q psy3029 235 FHYSKSIGGT----YYETSALQDQ-GIEDVFLNVSKGLIC 269 (617)
Q Consensus 235 ~~~~~~~g~~----~~evSAktg~-gI~eLf~~I~~~l~~ 269 (617)
..+++.++++ ++++||+++. ++++|++.|.+.+..
T Consensus 139 ~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 139 KELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp HHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 5666677776 9999999997 999999999887754
No 86
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=6.8e-26 Score=247.13 Aligned_cols=213 Identities=16% Similarity=0.191 Sum_probs=136.9
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcc--------cccccchhhhccCCEEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQE--------RFRSMAPMYYRNANAALLVF 186 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e--------~~~~~~~~~~~~ad~iIlV~ 186 (617)
+|||||||+|+|++.++ +.+.+++|.+++.....+......+.+|||+|++ ++..++..+++++|++|+|+
T Consensus 12 ~nvGKStL~n~l~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vv 90 (436)
T 2hjg_A 12 PNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMV 90 (436)
T ss_dssp TTSSHHHHHHHHEEEEC-C-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred CCCCHHHHHHHHhCCCc-eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 99999999999998774 4566788888777666666556789999999985 56667788899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHH
Q psy3029 187 DITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 187 Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~ 265 (617)
|++++.++.+ .|+..+.+. .++|++||+||+|+...+. +..+++ .+++ +++++||++|.|+++|+++|.+
T Consensus 91 D~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~ 161 (436)
T 2hjg_A 91 NGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAE 161 (436)
T ss_dssp ETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHH
T ss_pred eCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHH
Confidence 9998766543 444443332 3579999999999864321 112333 4565 7899999999999999999987
Q ss_pred HHHHhhhcccccccccccccCCccCCCCCCcccccCCCCCCCCCCchhhhheeeeccCCCCCCCcceeeeeeeccccccc
Q psy3029 266 GLICLSQESLHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLTEAETAKFVVGLSINSRVPNCFEANWFWLGVGKTS 345 (617)
Q Consensus 266 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ss~~~~~~~~~~~~v~ivG~~~~s~~~~~~~~~~g~~~vGKss 345 (617)
.+.... . . ......++++++|++ +|||||
T Consensus 162 ~l~~~~---~---------------~-----------------~~~~~~~ki~lvG~~----------------nvGKSS 190 (436)
T 2hjg_A 162 HFKNIP---E---------------T-----------------KYNEEVIQFCLIGRP----------------NVGKSS 190 (436)
T ss_dssp TGGGCC---S---------------S-----------------CCCTTCEEEEEECST----------------TSSHHH
T ss_pred hcCccc---c---------------c-----------------cccccCcEEEEEcCC----------------CCCHHH
Confidence 552100 0 0 001124678888888 999999
Q ss_pred ceeccccCccc-CccCCccceeeEEEEEEECCEEEEEEeecCCC
Q psy3029 346 MVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQLRTGLK 388 (617)
Q Consensus 346 i~~~~~~~~f~-~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~ 388 (617)
+++++++..+. ....++++.++..+.+.++++.+.|--++|+.
T Consensus 191 Lin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~ 234 (436)
T 2hjg_A 191 LVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMR 234 (436)
T ss_dssp HHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHT
T ss_pred HHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcC
Confidence 99999987764 44567777888888999999887766666653
No 87
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=8.1e-25 Score=238.83 Aligned_cols=213 Identities=16% Similarity=0.165 Sum_probs=135.8
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCccee--EEEEEEEECCeEEEEEEEecCCccc---------ccccchhhhccCCEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGAS--FFTAKINVGENKVKLQVWDTAGQER---------FRSMAPMYYRNANAAL 183 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~--~~~~~i~~~~~~~~l~i~Dt~G~e~---------~~~~~~~~~~~ad~iI 183 (617)
||||||||+|+|++.+. +.+.+++|++ +....+.+.+. .+.+|||+|++. +..+...+++++|++|
T Consensus 10 pnvGKStL~nrl~~~~~-~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il 86 (439)
T 1mky_A 10 PNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVL 86 (439)
T ss_dssp TTSSHHHHHHHHHC---------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEE
T ss_pred CCCCHHHHHHHHhCCCC-ceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEE
Confidence 99999999999998774 2334445554 33445555554 588999999764 2345677899999999
Q ss_pred EEEeCCChhhHHH--HHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHH-HHHHHhcCC-eEEEEcCCCCCCHHHH
Q psy3029 184 LVFDITQYHSFAA--IKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEA-FHYSKSIGG-TYYETSALQDQGIEDV 259 (617)
Q Consensus 184 lV~Dis~~~S~~~--l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~-~~~~~~~g~-~~~evSAktg~gI~eL 259 (617)
+|+|++++.+..+ +.+|+.. .++|++||+||+|+... . ..+. .+++ .+++ +++++||++|.|++++
T Consensus 87 ~V~D~~~~~~~~d~~i~~~l~~------~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L 156 (439)
T 1mky_A 87 FVVDGKRGITKEDESLADFLRK------STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTM 156 (439)
T ss_dssp EEEETTTCCCHHHHHHHHHHHH------HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHH
Confidence 9999988655432 3344432 23699999999998432 1 1223 4454 5676 7999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccccccccCCccCCCCCCcccccCCCCCCCCCCchhhhheeeeccCCCCCCCcceeeeeeec
Q psy3029 260 FLNVSKGLICLSQESLHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLTEAETAKFVVGLSINSRVPNCFEANWFWL 339 (617)
Q Consensus 260 f~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ss~~~~~~~~~~~~v~ivG~~~~s~~~~~~~~~~g~~ 339 (617)
+++|.+.+........ .. +.....++++++|++
T Consensus 157 ~~~i~~~l~~~~~~~~---------------~~----------------~~~~~~~kvaivG~~---------------- 189 (439)
T 1mky_A 157 LETIIKKLEEKGLDLE---------------SK----------------PEITDAIKVAIVGRP---------------- 189 (439)
T ss_dssp HHHHHHHHHHTTCCSS---------------SC----------------CCCCSCEEEEEECST----------------
T ss_pred HHHHHHhcccccccch---------------hc----------------cccccCceEEEECCC----------------
Confidence 9999887753210000 00 000123678888877
Q ss_pred ccccccceeccccCccc-CccCCccceeeEEEEEEECCEEEEEEeecCC
Q psy3029 340 GVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQLRTGL 387 (617)
Q Consensus 340 ~vGKssi~~~~~~~~f~-~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~ 387 (617)
++||||+++++++..+. ....|+++.++....+.++|+.+.+--++|+
T Consensus 190 gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~ 238 (439)
T 1mky_A 190 NVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 238 (439)
T ss_dssp TSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC
T ss_pred CCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCC
Confidence 99999999999977542 3445777788878889999987665434444
No 88
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.91 E-value=6e-24 Score=206.46 Aligned_cols=155 Identities=16% Similarity=0.185 Sum_probs=122.3
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
+.+||+++|+ +|||||||+++|+++.+ ..+.+|++.+. ..+.+++ +.+.+|||
T Consensus 24 ~~~ki~lvG~----------------------~~vGKSsLi~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~l~i~Dt 76 (198)
T 1f6b_A 24 KTGKLVFLGL----------------------DNAGKTTLLHMLKDDRL-GQHVPTLHPTS--EELTIAG--MTFTTFDL 76 (198)
T ss_dssp CCEEEEEEEE----------------------TTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEE
T ss_pred CCcEEEEECC----------------------CCCCHHHHHHHHhcCCC-CccCCCCCcee--EEEEECC--EEEEEEEC
Confidence 4578999999 99999999999998886 45778888764 3445555 78999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHh-
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKS- 240 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~- 240 (617)
+|++++..++..+++++|++|+|||++++.+|..+..|+..+.+.. ..++|++||+||+|+.. .+..+++.+++..
T Consensus 77 ~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~ 154 (198)
T 1f6b_A 77 GGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLY 154 (198)
T ss_dssp CC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCT
T ss_pred CCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcc
Confidence 9999999999999999999999999999999999999999887642 24589999999999965 4566777666542
Q ss_pred ----------------cCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 241 ----------------IGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 241 ----------------~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
.++++++|||++|.||+++|++|.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 155 GQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp TTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 34589999999999999999998753
No 89
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.91 E-value=1.8e-24 Score=207.82 Aligned_cols=159 Identities=23% Similarity=0.332 Sum_probs=129.7
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
....+||+|+|+ +|||||||+++|+++.+...+.+|++.++.. +. ...+.+.+|
T Consensus 19 ~~~~~ki~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~ 72 (188)
T 1zd9_A 19 SKEEMELTLVGL----------------------QYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLW 72 (188)
T ss_dssp CCEEEEEEEECS----------------------TTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEE
T ss_pred CCCccEEEEECC----------------------CCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE--eCCEEEEEE
Confidence 345689999999 9999999999999998887888999987643 22 245789999
Q ss_pred ecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHH-
Q psy3029 161 DTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYS- 238 (617)
Q Consensus 161 Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~- 238 (617)
||+|++++..++..+++++|++|+|||++++.++..+..|+..+.... ...+|++||+||+|+.... ..++.....
T Consensus 73 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~ 150 (188)
T 1zd9_A 73 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMN 150 (188)
T ss_dssp EECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTT
T ss_pred ECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhC
Confidence 999999999999999999999999999999999999999998876542 2458999999999996532 222222221
Q ss_pred ----HhcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 239 ----KSIGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 239 ----~~~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
...++++++|||++|.||+++|++|.+.+
T Consensus 151 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 151 LSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp GGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred hhhhccCCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 12345899999999999999999998765
No 90
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.91 E-value=1.6e-23 Score=201.92 Aligned_cols=155 Identities=17% Similarity=0.242 Sum_probs=128.2
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|+++.+. .+.+|++.+ ...+.+++ +.+.+|||
T Consensus 22 ~~~ki~~vG~----------------------~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt 74 (190)
T 1m2o_B 22 KHGKLLFLGL----------------------DNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDL 74 (190)
T ss_dssp --CEEEEEES----------------------TTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEEC
T ss_pred CccEEEEECC----------------------CCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEEC
Confidence 3468999999 999999999999998864 677888875 34455555 78999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHHh-
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSKS- 240 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~- 240 (617)
+|++++..++..+++++|++|+|||++++.+|+.+..|+..+.+.. ..++|++||+||+|+.. .+..+++.+++..
T Consensus 75 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~ 152 (190)
T 1m2o_B 75 GGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLL 152 (190)
T ss_dssp CCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999998886642 24589999999999965 4556666665543
Q ss_pred -----------cCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 241 -----------IGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 241 -----------~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
.++++++|||++|.||+++|++|.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 153 NTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp SCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 34589999999999999999998753
No 91
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.91 E-value=1.3e-23 Score=201.91 Aligned_cols=160 Identities=22% Similarity=0.298 Sum_probs=130.1
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCC-CCCccCCCcceeEEEEEEEECCeEEEEEE
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKM-FSHHISPTIGASFFTAKINVGENKVKLQV 159 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~-~~~~~~~t~g~~~~~~~i~~~~~~~~l~i 159 (617)
....+||+++|+ +|||||||+++|++.. +...+.+|++.. ...+.+++ +.+.+
T Consensus 18 ~~~~~ki~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l 71 (190)
T 2h57_A 18 GSKEVHVLCLGL----------------------DNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSSS--LSFTV 71 (190)
T ss_dssp ---CEEEEEEEC----------------------TTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEECSS--CEEEE
T ss_pred CCCccEEEEECC----------------------CCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEECC--EEEEE
Confidence 345689999999 9999999999999887 566778888743 44444443 68999
Q ss_pred EecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC---CCCeEEEEEECCCCCCccccCHHHHHH
Q psy3029 160 WDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD---EPLVLCVVGNKTDLESSREVNREEAFH 236 (617)
Q Consensus 160 ~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~---~~iPvIlVgNK~DL~~~~~v~~~e~~~ 236 (617)
|||+|++++..++..+++++|++|+|||++++.+|..+..|+..+..... ..+|++||+||+|+... ...+++.+
T Consensus 72 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~ 149 (190)
T 2h57_A 72 FDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQ 149 (190)
T ss_dssp EEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHH
T ss_pred EECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHH
Confidence 99999999999999999999999999999999999999999988876543 46899999999999653 33455555
Q ss_pred HHH-----hcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 237 YSK-----SIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 237 ~~~-----~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
++. ..+++++++||++|.||+++|++|.+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 150 LLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp HHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred HhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 542 23568999999999999999999988764
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.3e-23 Score=201.28 Aligned_cols=158 Identities=22% Similarity=0.294 Sum_probs=126.1
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...++|+++|+ +|||||||+++|+++.+. .+.+|+|.+.. .+.+++ +.+.+||
T Consensus 14 ~~~~~i~v~G~----------------------~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D 66 (187)
T 1zj6_A 14 HQEHKVIIVGL----------------------DNAGKTTILYQFSMNEVV-HTSPTIGSNVE--EIVINN--TRFLMWD 66 (187)
T ss_dssp TSCEEEEEEES----------------------TTSSHHHHHHHHHTTSCE-EEECCSCSSCE--EEEETT--EEEEEEE
T ss_pred CCccEEEEECC----------------------CCCCHHHHHHHHhcCCCC-cCcCCCccceE--EEEECC--EEEEEEE
Confidence 34579999999 999999999999988876 77788886644 334443 7899999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHH--
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYS-- 238 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~-- 238 (617)
|+|++++..++..+++++|++|+|||++++.+|..+..|+..+.... ...+|++||+||+|+... ...++..+..
T Consensus 67 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~ 144 (187)
T 1zj6_A 67 IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKL 144 (187)
T ss_dssp CCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTG
T ss_pred CCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhCh
Confidence 99999999999999999999999999999999999999999887652 245799999999999653 2334443332
Q ss_pred ---HhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 239 ---KSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 239 ---~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
...+++++++||++|.||+++|++|.+.+.
T Consensus 145 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 145 TSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp GGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred hhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 234568999999999999999999998764
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.91 E-value=8.1e-24 Score=201.84 Aligned_cols=157 Identities=22% Similarity=0.285 Sum_probs=127.1
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
....+||+++|+ +|||||||+++|+++.+ ..+.+|+|..+.. +.+++ +.+.+|
T Consensus 18 ~~~~~~i~v~G~----------------------~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~--~~~~~--~~~~i~ 70 (181)
T 2h17_A 18 GSQEHKVIIVGL----------------------DNAGKTTILYQFSMNEV-VHTSPTIGSNVEE--IVINN--TRFLMW 70 (181)
T ss_dssp ---CEEEEEEEE----------------------TTSSHHHHHHHHHTTSC-EEEECCSSSSCEE--EEETT--EEEEEE
T ss_pred CCceeEEEEECC----------------------CCCCHHHHHHHHhcCCC-CccCCcCceeeEE--EEECC--EEEEEE
Confidence 445689999999 99999999999999987 6777888876543 34443 789999
Q ss_pred ecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHH-
Q psy3029 161 DTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYS- 238 (617)
Q Consensus 161 Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~- 238 (617)
||+|++++..++..+++++|++|+|||++++.+|..+..|+..+.... ...+|++||+||+|+... ...++..+..
T Consensus 71 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~ 148 (181)
T 2h17_A 71 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLK 148 (181)
T ss_dssp EESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTT
T ss_pred ECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhC
Confidence 999999999999999999999999999999999999999988876642 245899999999999653 2233343332
Q ss_pred ----HhcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 239 ----KSIGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 239 ----~~~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
...+++++++||++|.||+++|++|.+.
T Consensus 149 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 149 LTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp GGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred cccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 2345689999999999999999998753
No 94
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.91 E-value=2.6e-23 Score=198.66 Aligned_cols=158 Identities=19% Similarity=0.254 Sum_probs=129.3
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..+||+++|+ +|||||||+++|+++. ...+.+|++... ..+.++ .+.+.+|||
T Consensus 17 ~~~~i~v~G~----------------------~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt 69 (186)
T 1ksh_A 17 RELRLLMLGL----------------------DNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEHR--GFKLNIWDV 69 (186)
T ss_dssp CCEEEEEECS----------------------TTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEET--TEEEEEEEE
T ss_pred CeeEEEEECC----------------------CCCCHHHHHHHHhcCC-CCcccccCccce--EEEEEC--CEEEEEEEC
Confidence 4578999999 9999999999999888 677888988553 344444 478999999
Q ss_pred CCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHH---
Q psy3029 163 AGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYS--- 238 (617)
Q Consensus 163 ~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~--- 238 (617)
+|++++..++..+++++|++|+|||++++.+|..+..|+..+.... ..++|++||+||+|+..... .++..+..
T Consensus 70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~ 147 (186)
T 1ksh_A 70 GGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELD 147 (186)
T ss_dssp CCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGG
T ss_pred CCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChh
Confidence 9999999999999999999999999999999999999998876642 24589999999999976432 33333322
Q ss_pred --HhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 239 --KSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 239 --~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
...+++++++||++|.|++++|++|.+.+.+
T Consensus 148 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 148 SIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp GCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred hccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 1345689999999999999999999988754
No 95
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.90 E-value=6.6e-24 Score=205.02 Aligned_cols=159 Identities=20% Similarity=0.267 Sum_probs=121.8
Q ss_pred ccccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEE
Q psy3029 80 LVSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQV 159 (617)
Q Consensus 80 ~~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i 159 (617)
.....+||+++|+ +|||||||+++|+++.+. .+.||++.. ...+.. ..+.+.+
T Consensus 25 ~~~~~~ki~v~G~----------------------~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~--~~~~~~i 77 (192)
T 2b6h_A 25 FGKKQMRILMVGL----------------------DAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEY--KNICFTV 77 (192)
T ss_dssp TTTSCEEEEEEES----------------------TTSSHHHHHHHHCSSCCE-EEEEETTEE--EEEEEE--TTEEEEE
T ss_pred ccCCccEEEEECC----------------------CCCCHHHHHHHHHhCCcc-ccCCcCcee--EEEEEE--CCEEEEE
Confidence 3456789999999 999999999999988865 456777743 334444 3478999
Q ss_pred EecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHH-
Q psy3029 160 WDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHY- 237 (617)
Q Consensus 160 ~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~- 237 (617)
|||+|++++..++..+++++|++|+|||++++.+|..+..|+..+.... ..++|++||+||+|+.... ..++....
T Consensus 78 ~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~ 155 (192)
T 2b6h_A 78 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKL 155 (192)
T ss_dssp EECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHT
T ss_pred EECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHh
Confidence 9999999999999999999999999999999999999999998876532 2458999999999996542 22222221
Q ss_pred ----HHhcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 238 ----SKSIGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 238 ----~~~~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
+...++++++|||++|.||+++|++|.+.+
T Consensus 156 ~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 156 GLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp TGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred CcccccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 222345799999999999999999998865
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.90 E-value=8.8e-24 Score=202.69 Aligned_cols=159 Identities=22% Similarity=0.253 Sum_probs=127.8
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ +|||||||+++|+++.+. .+.||++.... .+.++ .+.+.+||
T Consensus 20 ~~~~~i~v~G~----------------------~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~~~D 72 (189)
T 2x77_A 20 DRKIRVLMLGL----------------------DNAGKTSILYRLHLGDVV-TTVPTVGVNLE--TLQYK--NISFEVWD 72 (189)
T ss_dssp TSCEEEEEEEE----------------------TTSSHHHHHHHTCCSCCE-EECSSTTCCEE--EEEET--TEEEEEEE
T ss_pred CCceEEEEECC----------------------CCCCHHHHHHHHHcCCCC-CcCCCCceEEE--EEEEC--CEEEEEEE
Confidence 35679999999 999999999999988764 46788885543 34443 47899999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHH----
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFH---- 236 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~---- 236 (617)
|+|++++..++..+++++|++|+|||++++.++..+..|+..+.... ..++|++||+||+|+..... .++...
T Consensus 73 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~ 150 (189)
T 2x77_A 73 LGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGV 150 (189)
T ss_dssp ECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTG
T ss_pred CCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhCh
Confidence 99999999999999999999999999999999999999988876543 24589999999999975422 222222
Q ss_pred -HHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 237 -YSKSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 237 -~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
.+...+++++++||++|.||+++|++|.+.+..
T Consensus 151 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 151 SSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp GGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhccCCceEEEEccCCCccCHHHHHHHHHHHHHh
Confidence 223345689999999999999999999988754
No 97
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.90 E-value=1.4e-22 Score=195.53 Aligned_cols=162 Identities=38% Similarity=0.666 Sum_probs=147.3
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
.++|+|+|+ +|||||||+++|++..+...+.+|++.++....+.+++..+.+.+||++
T Consensus 29 ~~kv~lvG~----------------------~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~ 86 (191)
T 1oix_A 29 LFKVVLIGD----------------------SGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 86 (191)
T ss_dssp EEEEEEEEC----------------------TTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEEC
T ss_pred ceEEEEECc----------------------CCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECC
Confidence 478999999 9999999999999998888899999999988899999999999999999
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG 243 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~ 243 (617)
|++++..++..+++.++++++|||+++..+|+.+..|+..+........|+++|+||+|+...+.+..+++..++...++
T Consensus 87 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~ 166 (191)
T 1oix_A 87 GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGL 166 (191)
T ss_dssp SCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC
T ss_pred CCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999998899887765545679999999999977667778888899999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 244 TYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 244 ~~~evSAktg~gI~eLf~~I~~~l 267 (617)
.++++||+++.|++++|+.|.+.+
T Consensus 167 ~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 167 SFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999998765
No 98
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.90 E-value=2e-23 Score=199.61 Aligned_cols=158 Identities=23% Similarity=0.319 Sum_probs=126.0
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ +|||||||+++|++..+ ..+.+|+|... ..+.++ .+.+.+||
T Consensus 14 ~~~~ki~ivG~----------------------~~vGKSsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~i~D 66 (181)
T 1fzq_A 14 DQEVRILLLGL----------------------DNAGKTTLLKQLASEDI-SHITPTQGFNI--KSVQSQ--GFKLNVWD 66 (181)
T ss_dssp SSCEEEEEEES----------------------TTSSHHHHHHHHCCSCC-EEEEEETTEEE--EEEEET--TEEEEEEE
T ss_pred CCceEEEEECC----------------------CCCCHHHHHHHHhcCCC-CcccCcCCeEE--EEEEEC--CEEEEEEE
Confidence 34579999999 99999999999998864 46778888543 344444 47899999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHH--
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYS-- 238 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~-- 238 (617)
|+|++++..++..+++++|++++|||++++.+|..+..|+..+.... ...+|++||+||+|+..... .++..+..
T Consensus 67 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~ 144 (181)
T 1fzq_A 67 IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNL 144 (181)
T ss_dssp CSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTG
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCc
Confidence 99999999999999999999999999999999999999988875532 24579999999999975432 23332221
Q ss_pred ---HhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 239 ---KSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 239 ---~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
...++++++|||++|.||+++|++|.+.+.
T Consensus 145 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 145 HTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp GGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred hhccCCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 223458999999999999999999987664
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.90 E-value=8.6e-24 Score=204.63 Aligned_cols=161 Identities=21% Similarity=0.258 Sum_probs=124.8
Q ss_pred ccccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEE--EC-CeEEE
Q psy3029 80 LVSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKIN--VG-ENKVK 156 (617)
Q Consensus 80 ~~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~--~~-~~~~~ 156 (617)
.....+||+++|+ +|||||||++++.+.. ... ++++.++....+. +. +..+.
T Consensus 16 ~~~~~~ki~~vG~----------------------~~vGKTsLi~~l~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 70 (196)
T 3llu_A 16 FQGSKPRILLMGL----------------------RRSGKSSIQKVVFHKM-SPN--ETLFLESTNKIYKDDISNSSFVN 70 (196)
T ss_dssp ----CCEEEEEES----------------------TTSSHHHHHHHHHSCC-CGG--GGGGCCCCCSCEEEEECCTTSCC
T ss_pred ccCcceEEEEECC----------------------CCCCHHHHHHHHHhcC-CCc--ceeeeccccceeeeeccCCCeeE
Confidence 3556789999999 9999999999887743 333 4555544433333 32 56689
Q ss_pred EEEEecCCcccccccc---hhhhccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCC------
Q psy3029 157 LQVWDTAGQERFRSMA---PMYYRNANAALLVFDITQY--HSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLES------ 225 (617)
Q Consensus 157 l~i~Dt~G~e~~~~~~---~~~~~~ad~iIlV~Dis~~--~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~------ 225 (617)
+.+|||+|+++|..+. ..+++++|++|+|||++++ +++..+..|+..+.... .++|++||+||+|+..
T Consensus 71 l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~ 149 (196)
T 3llu_A 71 FQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIE 149 (196)
T ss_dssp EEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHH
T ss_pred EEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhH
Confidence 9999999999988777 8999999999999999997 66777778888775444 3589999999999865
Q ss_pred -ccccCHHHHHHHHH----hcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 226 -SREVNREEAFHYSK----SIGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 226 -~~~v~~~e~~~~~~----~~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
.+.+..++...+++ .++++|+++||++ .||+++|+.|++.+
T Consensus 150 ~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 150 TQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 24455566677777 6788999999999 99999999998764
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=8e-24 Score=201.31 Aligned_cols=160 Identities=21% Similarity=0.271 Sum_probs=126.5
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...++|+++|+ +|||||||+++|+++.+ ..+.+|+|.... .+.+++ +.+.+||
T Consensus 16 ~~~~~i~v~G~----------------------~~~GKssli~~l~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~i~D 68 (183)
T 1moz_A 16 NKELRILILGL----------------------DGAGKTTILYRLQIGEV-VTTKPTIGFNVE--TLSYKN--LKLNVWD 68 (183)
T ss_dssp SSCEEEEEEEE----------------------TTSSHHHHHHHTCCSEE-EEECSSTTCCEE--EEEETT--EEEEEEE
T ss_pred CCccEEEEECC----------------------CCCCHHHHHHHHhcCCc-CccCCcCccceE--EEEECC--EEEEEEE
Confidence 35679999999 99999999999998876 677888886543 344443 7899999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHHH-
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYSK- 239 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~- 239 (617)
|+|++++..++..+++++|++|+|||++++.++..+..|+..+.... ...+|++||+||+|+... ...++..+...
T Consensus 69 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~ 146 (183)
T 1moz_A 69 LGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNL 146 (183)
T ss_dssp EC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTT
T ss_pred CCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCc
Confidence 99999999999999999999999999999999999999998887653 345899999999999653 23344433332
Q ss_pred ----hcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 240 ----SIGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 240 ----~~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
..+++++++||++|.||++++++|.+.+.+.
T Consensus 147 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 147 VELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp TTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred ccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 2345799999999999999999999887653
No 101
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.90 E-value=1e-22 Score=212.63 Aligned_cols=164 Identities=28% Similarity=0.560 Sum_probs=144.5
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...++|+++|+ +|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||
T Consensus 153 ~~~~~i~i~G~----------------------~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D 209 (332)
T 2wkq_A 153 KELIKCVVVGD----------------------GAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWD 209 (332)
T ss_dssp TTCEEEEEEES----------------------TTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEE
T ss_pred cceeEEEEECC----------------------CCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEe
Confidence 34478888888 99999999999999988888888887664 55667888899999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCc------------cc
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDEPLVLCVVGNKTDLESS------------RE 228 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~------------~~ 228 (617)
|+|++++..++..+++++|++|+|||++++.+|..+. .|+..+..... .+|++||+||+|+... +.
T Consensus 210 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 288 (332)
T 2wkq_A 210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTP 288 (332)
T ss_dssp ECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCC
T ss_pred CCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhcccccccc
Confidence 9999999999999999999999999999999999987 79888877655 5799999999998643 46
Q ss_pred cCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 229 VNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 229 v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
+..+++..+++.+++ ++++|||++|.||+++|+.|.+.+..
T Consensus 289 v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 289 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 778888899999998 99999999999999999999987753
No 102
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.83 E-value=2.5e-25 Score=216.57 Aligned_cols=162 Identities=28% Similarity=0.559 Sum_probs=138.5
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...+||+++|+ +|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||
T Consensus 28 ~~~~ki~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D 84 (204)
T 3th5_A 28 GQAIKCVVVGD----------------------GAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWD 84 (204)
Confidence 45678888888 99999999999999888778888877654 44556677788999999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCcc------------c
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIK-TWVKELKRNVDEPLVLCVVGNKTDLESSR------------E 228 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~~------------~ 228 (617)
|+|++++..++..+++++|++|+|||++++.+|..+. .|+..+....+ ++|++||+||+|+.... .
T Consensus 85 t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~ 163 (204)
T 3th5_A 85 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTP 163 (204)
Confidence 9999999999999999999999999999999999986 78888876544 57999999999997543 4
Q ss_pred cCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 229 VNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 229 v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~~l 267 (617)
+..+++..+++.+++ +++++||++|.||+++|++|.+.+
T Consensus 164 v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 164 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 556677788888888 999999999999999999988754
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.89 E-value=9.6e-24 Score=213.75 Aligned_cols=171 Identities=18% Similarity=0.214 Sum_probs=125.8
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHc---CCCCCccCCCc-ceeEEEEEEE--------
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIG---KMFSHHISPTI-GASFFTAKIN-------- 149 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~---~~~~~~~~~t~-g~~~~~~~i~-------- 149 (617)
...+||+++|+.. -+..-|..|||||||+++|++ ..+...+.+|. +.++..+.+.
T Consensus 17 ~~~~ki~lvG~~~-------------~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~ 83 (255)
T 3c5h_A 17 QGTYNISVVGLSG-------------TEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWG 83 (255)
T ss_dssp CSCEEEEEEESCC-------------CTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEE
T ss_pred CceeEEEEECCCc-------------cccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccc
Confidence 4558999999900 000011119999999999998 55666666664 5554322221
Q ss_pred ------ECCeEEEEEEEe-----------------------cCCcccccccchhhhc---------------------cC
Q psy3029 150 ------VGENKVKLQVWD-----------------------TAGQERFRSMAPMYYR---------------------NA 179 (617)
Q Consensus 150 ------~~~~~~~l~i~D-----------------------t~G~e~~~~~~~~~~~---------------------~a 179 (617)
+++..+.++||| ++|+++|..++..++. ++
T Consensus 84 ~~~~~~~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 163 (255)
T 3c5h_A 84 EVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLV 163 (255)
T ss_dssp EEC---------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEEC
T ss_pred cccccccCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccC
Confidence 356778999999 7788888888888887 79
Q ss_pred CEEEEEEeCCCh--hhHHHHHHHHHHHHhc-CCCCCeEEEEEECCCCCCccccCHHHHHHHHHh-cCCeEEEEcCCCCCC
Q psy3029 180 NAALLVFDITQY--HSFAAIKTWVKELKRN-VDEPLVLCVVGNKTDLESSREVNREEAFHYSKS-IGGTYYETSALQDQG 255 (617)
Q Consensus 180 d~iIlV~Dis~~--~S~~~l~~~l~~i~~~-~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~-~g~~~~evSAktg~g 255 (617)
|++|+|||++++ .+|+.+..|+..+... ...++|++||+||+|+..++.+ +++..++.. .+++++++||++|.|
T Consensus 164 d~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp CEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred CEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCC
Confidence 999999999998 8999999999988765 2345899999999999765544 566777776 478999999999999
Q ss_pred HHHHHHHHHHHH
Q psy3029 256 IEDVFLNVSKGL 267 (617)
Q Consensus 256 I~eLf~~I~~~l 267 (617)
|+++|++|.+.+
T Consensus 242 v~elf~~l~~~l 253 (255)
T 3c5h_A 242 VDLAFSTLVQLI 253 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998866
No 104
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=4.7e-24 Score=233.89 Aligned_cols=213 Identities=16% Similarity=0.197 Sum_probs=139.2
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCC--------cccccccchhhhccCCEEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAG--------QERFRSMAPMYYRNANAALLVF 186 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G--------~e~~~~~~~~~~~~ad~iIlV~ 186 (617)
+|||||||+|+|++.++ ..+.+++|+++......+......+.+|||+| ++++..+...+++++|++|+|+
T Consensus 32 ~nvGKSTL~n~l~~~~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~Vv 110 (456)
T 4dcu_A 32 PNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMV 110 (456)
T ss_dssp SSSSHHHHHHHHEEEEE-C-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEE
T ss_pred CCCcHHHHHHHHhCCCC-cccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEE
Confidence 99999999999998774 35667888888877777776677899999999 6677778888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHH
Q psy3029 187 DITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 187 Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~ 265 (617)
|..+.. ...+.|+..+.+. .++|++||+||+|+.... +...+++ .+++ .++++||++|.|+.++++.+.+
T Consensus 111 D~~~~~--~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~ 181 (456)
T 4dcu_A 111 NGREGV--TAADEEVAKILYR--TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAE 181 (456)
T ss_dssp ESSSCS--CHHHHHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHT
T ss_pred eCCCCC--ChHHHHHHHHHHH--cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeecccccchHHHHHHHHh
Confidence 987643 3334455544432 457999999999986432 1122222 2343 5679999999999999999876
Q ss_pred HHHHhhhcccccccccccccCCccCCCCCCcccccCCCCCCCCCCchhhhheeeeccCCCCCCCcceeeeeeeccccccc
Q psy3029 266 GLICLSQESLHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLTEAETAKFVVGLSINSRVPNCFEANWFWLGVGKTS 345 (617)
Q Consensus 266 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ss~~~~~~~~~~~~v~ivG~~~~s~~~~~~~~~~g~~~vGKss 345 (617)
.+.... .........+++++|.+ ++||||
T Consensus 182 ~l~~~~-----------------------------------~~~~~~~~~ki~ivG~~----------------~vGKSs 210 (456)
T 4dcu_A 182 HFKNIP-----------------------------------ETKYNEEVIQFCLIGRP----------------NVGKSS 210 (456)
T ss_dssp TGGGSC-----------------------------------SSCCCTTCEEEEEECST----------------TSSHHH
T ss_pred hccccc-----------------------------------ccccccccceeEEecCC----------------CCCHHH
Confidence 442100 00001124567777777 999999
Q ss_pred ceeccccCc-ccCccCCccceeeEEEEEEECCEEEEEEeecCCC
Q psy3029 346 MVVRYIGKM-FSHHISPTIGASFFTAKINVGENKVKLQLRTGLK 388 (617)
Q Consensus 346 i~~~~~~~~-f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~ 388 (617)
++++++... +.....++++.++....+.+++..+.|--++|+.
T Consensus 211 lin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~ 254 (456)
T 4dcu_A 211 LVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMR 254 (456)
T ss_dssp HHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTT
T ss_pred HHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCC
Confidence 999999654 4445567778888888999999988777677764
No 105
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.88 E-value=8.8e-23 Score=191.95 Aligned_cols=144 Identities=19% Similarity=0.161 Sum_probs=108.2
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccccc------ccchhhhc--cCCEEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFR------SMAPMYYR--NANAALLVF 186 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~------~~~~~~~~--~ad~iIlV~ 186 (617)
+|||||||+++|++..+.....++.+.+.....+.+++ ..+.+|||+|++++. .+...|++ ++|++++|+
T Consensus 12 ~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 89 (165)
T 2wji_A 12 PNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIV 89 (165)
T ss_dssp TTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEE
T ss_pred CCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEe
Confidence 99999999999998776545555555555555555554 579999999998775 33456665 899999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 187 DITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 187 Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
|+++.+ ....|+..+.+ ..+|+++|+||+|+...+.+.. ++..+++.++++++++||++|.||+++|++|.+.
T Consensus 90 D~~~~~---~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~ 162 (165)
T 2wji_A 90 DATALE---RNLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIA 162 (165)
T ss_dssp ETTCHH---HHHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHH
T ss_pred cCCchh---HhHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 998754 34567777765 2479999999999865444432 3567888889999999999999999999999875
Q ss_pred H
Q psy3029 267 L 267 (617)
Q Consensus 267 l 267 (617)
+
T Consensus 163 ~ 163 (165)
T 2wji_A 163 V 163 (165)
T ss_dssp T
T ss_pred h
Confidence 4
No 106
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.87 E-value=3.6e-22 Score=195.40 Aligned_cols=159 Identities=18% Similarity=0.241 Sum_probs=114.0
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCe-EEEEEEEe
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGEN-KVKLQVWD 161 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~-~~~l~i~D 161 (617)
..+||+++|+ +|||||||+++|+++.+...+.+ .+.++.. +.+++. .+.+.+||
T Consensus 6 ~~~ki~vvG~----------------------~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~D 60 (214)
T 2fh5_B 6 SQRAVLFVGL----------------------CDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLID 60 (214)
T ss_dssp --CEEEEECS----------------------TTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEE
T ss_pred CCCEEEEECC----------------------CCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEE
Confidence 4578899998 99999999999999888776654 4444443 555543 68899999
Q ss_pred cCCcccccc-cchhhhccCCEEEEEEeCCChh-hHHHHHHHHHHH-Hh--cCCCCCeEEEEEECCCCCCccccCH--HHH
Q psy3029 162 TAGQERFRS-MAPMYYRNANAALLVFDITQYH-SFAAIKTWVKEL-KR--NVDEPLVLCVVGNKTDLESSREVNR--EEA 234 (617)
Q Consensus 162 t~G~e~~~~-~~~~~~~~ad~iIlV~Dis~~~-S~~~l~~~l~~i-~~--~~~~~iPvIlVgNK~DL~~~~~v~~--~e~ 234 (617)
|+|++++.. ++..|++.+|++|+|||+++.. ++..+.+|+..+ .. .....+|++||+||+|+........ +..
T Consensus 61 t~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l 140 (214)
T 2fh5_B 61 LPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQL 140 (214)
T ss_dssp CCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHH
Confidence 999999987 7888999999999999999854 466655544443 32 1234589999999999975433110 111
Q ss_pred HH--------------------------------HHH-hc--CCeEEEEcCCCC------CCHHHHHHHHHHH
Q psy3029 235 FH--------------------------------YSK-SI--GGTYYETSALQD------QGIEDVFLNVSKG 266 (617)
Q Consensus 235 ~~--------------------------------~~~-~~--g~~~~evSAktg------~gI~eLf~~I~~~ 266 (617)
.. |+. .+ +++|++|||++| .||+++|++|.+.
T Consensus 141 ~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 141 EKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp HHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred HHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 111 11 568999999999 9999999999764
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.86 E-value=6e-22 Score=208.03 Aligned_cols=159 Identities=19% Similarity=0.258 Sum_probs=121.4
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
....+||+|+|+ +|||||||+++|+++.+... .||++..+.. +.. ..+.+.||
T Consensus 162 ~~~~~kI~ivG~----------------------~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~--~~~--~~~~l~i~ 214 (329)
T 3o47_A 162 GKKEMRILMVGL----------------------DAAGKTTILYKLKLGEIVTT-IPTIGFNVET--VEY--KNISFTVW 214 (329)
T ss_dssp -CCSEEEEEEES----------------------TTSSHHHHHHHTCSSCCEEE-EEETTEEEEE--EEE--TTEEEEEE
T ss_pred ccCcceEEEECC----------------------CCccHHHHHHHHhCCCCCCc-ccccceEEEE--Eec--CcEEEEEE
Confidence 456789999999 99999999999999887544 4677766443 333 45789999
Q ss_pred ecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHH-
Q psy3029 161 DTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYS- 238 (617)
Q Consensus 161 Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~- 238 (617)
||+|+++|..++..+++.+|++|+|||++++.+|..+..|+..+.... ...+|++||+||+|+..... .++.....
T Consensus 215 Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~ 292 (329)
T 3o47_A 215 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLG 292 (329)
T ss_dssp ECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHT
T ss_pred ECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhc
Confidence 999999999999999999999999999999999999988887765543 24689999999999975432 22222222
Q ss_pred ----HhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 239 ----KSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 239 ----~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
...+++++++||++|.||+++|+.|.+.+.
T Consensus 293 ~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 293 LHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp CTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred hhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 123457999999999999999999998764
No 108
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.86 E-value=2.6e-21 Score=182.87 Aligned_cols=158 Identities=15% Similarity=0.161 Sum_probs=119.1
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...++|+++|+ +|||||||+++|++..+...+.++.+.++....+.+++. .+.+||
T Consensus 6 ~~~~~i~v~G~----------------------~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~D 61 (178)
T 2lkc_A 6 ERPPVVTIMGH----------------------VDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLD 61 (178)
T ss_dssp CCCCEEEEESC----------------------TTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESC
T ss_pred CCCCEEEEECC----------------------CCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEE
Confidence 34568889998 999999999999999887777777776666666666664 577999
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHh-
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKS- 240 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~- 240 (617)
|+|++++..++..++..+|++|+|||++++.....+ +++..+. ...+|++||+||+|+.... .++.......
T Consensus 62 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~l~~~~---~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~ 134 (178)
T 2lkc_A 62 TPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTV-EAINHAK---AANVPIIVAINKMDKPEAN---PDRVMQELMEY 134 (178)
T ss_dssp CCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHH-HHHHHHG---GGSCCEEEEEETTTSSCSC---HHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHH---hCCCCEEEEEECccCCcCC---HHHHHHHHHhc
Confidence 999999999999999999999999999884322222 1222222 2357999999999996532 2233332222
Q ss_pred ------cC--CeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 241 ------IG--GTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 241 ------~g--~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
++ ++++++||++|.||+++|++|.+.+...
T Consensus 135 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 135 NLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp TCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred CcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence 22 5899999999999999999999877543
No 109
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.86 E-value=5.9e-21 Score=189.30 Aligned_cols=165 Identities=15% Similarity=0.100 Sum_probs=116.9
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...++|+++|+ +|||||||+++|++..+.....+....+.....+... .+.+.|||
T Consensus 27 ~~~~kI~vvG~----------------------~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~D 82 (228)
T 2qu8_A 27 PHKKTIILSGA----------------------PNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIID 82 (228)
T ss_dssp TTSEEEEEECS----------------------TTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEE
T ss_pred CCCCEEEEECC----------------------CCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEE
Confidence 45689999999 9999999999999887642222222222222222223 36799999
Q ss_pred cCCc------ccc---cccchhhhccCCEEEEEEeCCChhhHHH--HHHHHHHHHhcCCCCCeEEEEEECCCCCCccccC
Q psy3029 162 TAGQ------ERF---RSMAPMYYRNANAALLVFDITQYHSFAA--IKTWVKELKRNVDEPLVLCVVGNKTDLESSREVN 230 (617)
Q Consensus 162 t~G~------e~~---~~~~~~~~~~ad~iIlV~Dis~~~S~~~--l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~ 230 (617)
|+|+ ++. ...+..++..+|++|+|||++++.+|.. ...|+..+.... ..+|++||+||+|+...+.+.
T Consensus 83 tpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~ 161 (228)
T 2qu8_A 83 TPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLS 161 (228)
T ss_dssp CTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCC
T ss_pred CCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhH
Confidence 9998 331 1123445778999999999999887652 335666665543 257999999999998766665
Q ss_pred HH---HHHHHHHhcC--CeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 231 RE---EAFHYSKSIG--GTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 231 ~~---e~~~~~~~~g--~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
.+ ....++...+ +++++|||++|.||+++|++|.+.+....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 162 IDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 43 4556777777 79999999999999999999999887654
No 110
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.86 E-value=2.9e-21 Score=185.63 Aligned_cols=155 Identities=15% Similarity=0.197 Sum_probs=110.3
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...++|+++|. +|||||||+++|++..+...+.++++.++......+++ .+.+||
T Consensus 21 ~~~~~i~v~G~----------------------~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~D 75 (195)
T 1svi_A 21 GGLPEIALAGR----------------------SNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVD 75 (195)
T ss_dssp SCCCEEEEEEB----------------------TTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEE
T ss_pred CCCCEEEEECC----------------------CCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEE
Confidence 45679999999 99999999999999887777778887776555555544 589999
Q ss_pred cCC----------cccccccchhhhccC---CEEEEEEeCCChhhHHHHH--HHHHHHHhcCCCCCeEEEEEECCCCCCc
Q psy3029 162 TAG----------QERFRSMAPMYYRNA---NAALLVFDITQYHSFAAIK--TWVKELKRNVDEPLVLCVVGNKTDLESS 226 (617)
Q Consensus 162 t~G----------~e~~~~~~~~~~~~a---d~iIlV~Dis~~~S~~~l~--~~l~~i~~~~~~~iPvIlVgNK~DL~~~ 226 (617)
|+| ++.+..++..++..+ |++++|+|++++.++.... +|+.. ..+|+++|+||+|+...
T Consensus 76 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 76 VPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY------YGIPVIVIATKADKIPK 149 (195)
T ss_dssp CCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCG
T ss_pred CCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEECcccCCh
Confidence 999 677777788888877 9999999999987776543 34332 34799999999999765
Q ss_pred cccCH--HHHHH-HHHhcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 227 REVNR--EEAFH-YSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 227 ~~v~~--~e~~~-~~~~~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
+++.. +++.+ +....+++++++||++|.||+++|++|.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 150 GKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp GGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 54332 22322 3333467999999999999999999998765
No 111
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.85 E-value=3.1e-21 Score=200.64 Aligned_cols=157 Identities=20% Similarity=0.298 Sum_probs=127.2
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCC--C-CccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMF--S-HHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~--~-~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
++||+++|+ +|||||||+++|+++.. . ..+.+|++..+.. +.+.+ .+.+.+|
T Consensus 3 ~~KI~lvG~----------------------~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~ 57 (307)
T 3r7w_A 3 GSKLLLMGR----------------------SGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLW 57 (307)
T ss_dssp EEEEEEECC----------------------TTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEE
T ss_pred ceEEEEECC----------------------CCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEE
Confidence 578999999 99999999999998732 2 2466787776554 33444 5889999
Q ss_pred ecCCcccc-----cccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHH---HhcCCCCCeEEEEEECCCCCC--ccc--
Q psy3029 161 DTAGQERF-----RSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKEL---KRNVDEPLVLCVVGNKTDLES--SRE-- 228 (617)
Q Consensus 161 Dt~G~e~~-----~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i---~~~~~~~iPvIlVgNK~DL~~--~~~-- 228 (617)
||+|++++ ..++..+++++|++|+|||++++.+|+.+..|...+ .... .++|++||+||+|+.. .+.
T Consensus 58 Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~-~~~piilv~NK~Dl~~~~~r~~~ 136 (307)
T 3r7w_A 58 DCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS-PDAKIFVLLHKMDLVQLDKREEL 136 (307)
T ss_dssp EECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHH
T ss_pred ECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhC-CCCeEEEEEecccccchhhhhHH
Confidence 99999988 778899999999999999999999999987765544 3333 3589999999999976 443
Q ss_pred --cCHHHHHHHHHhcC---CeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 229 --VNREEAFHYSKSIG---GTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 229 --v~~~e~~~~~~~~g---~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
+..+++.++++.+| ++++++||++ .++.++|..++..+
T Consensus 137 ~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 137 FQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp HHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 55577888999987 7999999999 89999998887654
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=1.6e-21 Score=216.00 Aligned_cols=160 Identities=17% Similarity=0.259 Sum_probs=126.9
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
....+||+|+|+ +|||||||+++|++..+. .+.+|++.++... . ...+.+.||
T Consensus 319 ~~~~~ki~lvG~----------------------~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~~--~--~~~~~~~l~ 371 (497)
T 3lvq_E 319 SNKEMRILMLGL----------------------DAAGKTTILYKLKLGQSV-TTIPTVGFNVETV--T--YKNVKFNVW 371 (497)
T ss_dssp -CCEEEEEEECS----------------------TTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEE--E--SSSCEEEEE
T ss_pred cccceeEEEEcC----------------------CCCCHHHHHHHHhcCCCC-CcCCccceeEEEE--E--eCCEEEEEE
Confidence 445689999999 999999999999998854 5668888765442 2 345789999
Q ss_pred ecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCccccCHHHHHHHH-
Q psy3029 161 DTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSREVNREEAFHYS- 238 (617)
Q Consensus 161 Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~- 238 (617)
||+|++++..++..+++++|++|+|||++++.+|..+..|+..+.+.. ...+|+|||+||+|+.... ..++.....
T Consensus 372 Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~ 449 (497)
T 3lvq_E 372 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 449 (497)
T ss_dssp EECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTT
T ss_pred ECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhc
Confidence 999999999999999999999999999999999999999988876543 2458999999999996532 223222221
Q ss_pred ----HhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 239 ----KSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 239 ----~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
...++++++|||++|.||+++|++|.+.+..
T Consensus 450 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 450 LTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp CTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC-
T ss_pred hhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 1223469999999999999999999887644
No 113
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.85 E-value=1.5e-21 Score=186.46 Aligned_cols=146 Identities=19% Similarity=0.150 Sum_probs=114.3
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccccc------ccchhhhc--cCCEEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFR------SMAPMYYR--NANAALLVF 186 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~------~~~~~~~~--~ad~iIlV~ 186 (617)
+|||||||+++|++..+.....++.+.+.....+..++ +.+.+|||+|++++. .+...++. .+|++++|+
T Consensus 16 ~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 93 (188)
T 2wjg_A 16 PNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIV 93 (188)
T ss_dssp TTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEE
T ss_pred CCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEe
Confidence 99999999999998765555556666666666665554 679999999998875 34556664 599999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 187 DITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 187 Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
|.++ ++.+..|+..+.. ..+|++||+||+|+...+.+. ++...+++.++++++++||+++.||+++|++|.+.
T Consensus 94 d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 166 (188)
T 2wjg_A 94 DATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIA 166 (188)
T ss_dssp EGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHH
T ss_pred cchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHH
Confidence 9875 5666678877765 347999999999986544443 34567888889999999999999999999999887
Q ss_pred HHH
Q psy3029 267 LIC 269 (617)
Q Consensus 267 l~~ 269 (617)
+..
T Consensus 167 ~~~ 169 (188)
T 2wjg_A 167 VKD 169 (188)
T ss_dssp HTT
T ss_pred HHh
Confidence 743
No 114
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.85 E-value=6.2e-22 Score=205.51 Aligned_cols=148 Identities=17% Similarity=0.202 Sum_probs=115.9
Q ss_pred CCCCHHHHHHHHHcCCCCC---ccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccc---cchhhhccCCEEEEEEeC
Q psy3029 115 LGVGKTSMVVRYIGKMFSH---HISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRS---MAPMYYRNANAALLVFDI 188 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~---~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~---~~~~~~~~ad~iIlV~Di 188 (617)
.|||||||++++.++.+.. .+.+|+|.++.. ++ ..++++||||+|+++|.. +++.|+++++++|+|||+
T Consensus 8 sgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Di 82 (331)
T 3r7w_B 8 RRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDS 82 (331)
T ss_dssp TTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCC
T ss_pred CCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEEC
Confidence 9999999999988664432 367899988754 22 348899999999999964 468899999999999999
Q ss_pred CCh--hhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCc-------cccCHHHHHHHHHh----cCCeEEEEcCCCCCC
Q psy3029 189 TQY--HSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESS-------REVNREEAFHYSKS----IGGTYYETSALQDQG 255 (617)
Q Consensus 189 s~~--~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~-------~~v~~~e~~~~~~~----~g~~~~evSAktg~g 255 (617)
+++ ..+..+.+|+..+....+ ++|++|||||+||..+ +++..+++.++++. +++.|+++||++ .+
T Consensus 83 td~~~~~~~~l~~~l~~~~~~~~-~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~n 160 (331)
T 3r7w_B 83 QDEYINAITNLAMIIEYAYKVNP-SINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HS 160 (331)
T ss_dssp SSCTTHHHHHHHHHHHHHHHHCT-TCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SH
T ss_pred CchHHHHHHHHHHHHHHHhhcCC-CCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-Cc
Confidence 997 233344445655555443 5899999999999754 45667777788875 678999999998 69
Q ss_pred HHHHHHHHHHHHHH
Q psy3029 256 IEDVFLNVSKGLIC 269 (617)
Q Consensus 256 I~eLf~~I~~~l~~ 269 (617)
|.+.|..|++.+..
T Consensus 161 V~eAFs~iv~~li~ 174 (331)
T 3r7w_B 161 IYEAFSRIVQKLIP 174 (331)
T ss_dssp HHHHHHHHHTTSST
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999876654
No 115
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.85 E-value=3e-21 Score=183.13 Aligned_cols=153 Identities=19% Similarity=0.185 Sum_probs=113.9
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCC-CccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~-~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
.+||+++|+ +|||||||+++|++..+. ....++.+.++....+.+++. .+.+|||
T Consensus 4 ~~ki~ivG~----------------------~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt 59 (172)
T 2gj8_A 4 GMKVVIAGR----------------------PNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDT 59 (172)
T ss_dssp CEEEEEEES----------------------TTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEEC
T ss_pred CCEEEEECC----------------------CCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEEC
Confidence 358888888 999999999999987642 122334445556666777664 4889999
Q ss_pred CCccccccc--------chhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHH
Q psy3029 163 AGQERFRSM--------APMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEA 234 (617)
Q Consensus 163 ~G~e~~~~~--------~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~ 234 (617)
+|++++... ...+++++|++|+|||++++.++.. ..|+..+.+.....+|++||+||+|+..+..
T Consensus 60 ~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~------ 132 (172)
T 2gj8_A 60 AGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL------ 132 (172)
T ss_dssp CCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC------
T ss_pred CCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh------
Confidence 998754321 1246789999999999999888763 4688777766555689999999999853211
Q ss_pred HHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 235 ~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
.++...+.+++++||++|.||+++|++|.+.+.
T Consensus 133 -~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 133 -GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp -EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred -hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 123335678999999999999999999987653
No 116
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.84 E-value=3.8e-21 Score=183.61 Aligned_cols=147 Identities=18% Similarity=0.190 Sum_probs=112.4
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCC-----------cccccccchhhhcc-CCEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAG-----------QERFRSMAPMYYRN-ANAA 182 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G-----------~e~~~~~~~~~~~~-ad~i 182 (617)
+|||||||+++|++..+...+.++.... ...+.+. .+.+|||+| ++++..++..+++. ++++
T Consensus 10 ~~~GKSsli~~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (190)
T 2cxx_A 10 SNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNI 83 (190)
T ss_dssp TTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGC
T ss_pred CCCCHHHHHHHHhCcCCccCCCCCccce--eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999998776666654443 3333333 689999999 66777778888887 8878
Q ss_pred EEEEeCCChhhHHHH-HHHHHH--------H-HhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCe-------E
Q psy3029 183 LLVFDITQYHSFAAI-KTWVKE--------L-KRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGT-------Y 245 (617)
Q Consensus 183 IlV~Dis~~~S~~~l-~~~l~~--------i-~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~-------~ 245 (617)
++||++.+..++..+ ..|... + .......+|+++|+||+|+...+ .++...++..++++ +
T Consensus 84 ~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T 2cxx_A 84 DVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVF 160 (190)
T ss_dssp CEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHE
T ss_pred CEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcE
Confidence 888888788888776 567542 2 22222457999999999997654 45677788888864 7
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 246 YETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 246 ~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
+++||++|.||+++|++|.+.+...
T Consensus 161 ~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 161 IPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred EEEecCCCCCHHHHHHHHHHhcchh
Confidence 9999999999999999999887653
No 117
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.83 E-value=3.7e-21 Score=215.05 Aligned_cols=163 Identities=21% Similarity=0.332 Sum_probs=125.7
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEE------EEE--CC
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAK------INV--GE 152 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~------i~~--~~ 152 (617)
....+||+++|. +|||||||+++|++..+...+.+|+|.++..+. +.+ .+
T Consensus 38 ~~~~~kV~lvG~----------------------~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~ 95 (535)
T 3dpu_A 38 HLQEIKVHLIGD----------------------GMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDEL 95 (535)
T ss_dssp CCCEEEEEEESS----------------------SCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTT
T ss_pred cccceEEEEECC----------------------CCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCC
Confidence 345689999999 999999999999999988889999999877652 112 23
Q ss_pred eEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHH
Q psy3029 153 NKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNRE 232 (617)
Q Consensus 153 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~ 232 (617)
..+.+.+|||+|++.+..+...+++++|++|+|||+++. +.+..|+..+....+ ++|+|||+||+|+...+.+..+
T Consensus 96 ~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~ 171 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQK 171 (535)
T ss_dssp TTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHH
T ss_pred ceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHH
Confidence 467899999999999999999999999999999999765 556778888887764 4799999999999887788888
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 233 e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
++..++...+++++++||++|.||+++++.|.+.+..
T Consensus 172 ~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 172 KINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp HHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred HHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 8888999999999999999999999999999987754
No 118
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.83 E-value=1.3e-20 Score=174.72 Aligned_cols=142 Identities=18% Similarity=0.132 Sum_probs=98.4
Q ss_pred CCCCHHHHHHHHHcCCCC-CccCCCcceeEEEEEEEECCeEEEEEEEecCCcccc-------cccchhhhccCCEEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQVWDTAGQERF-------RSMAPMYYRNANAALLVF 186 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~-~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~-------~~~~~~~~~~ad~iIlV~ 186 (617)
+|||||||+++|++..+. ....++...+.....+..++. .+.+|||+|++.+ ...+..+++.+|++|+|+
T Consensus 10 ~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 87 (161)
T 2dyk_A 10 PNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAV 87 (161)
T ss_dssp TTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEE
T ss_pred CCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEE
Confidence 999999999999987643 222233334445555555554 6889999999873 344566788999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC-eEEEEcCCCCCCHHHHHHHHHH
Q psy3029 187 DITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 187 Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~eLf~~I~~ 265 (617)
|++++.+... .|+..+... ..+|+++|+||+|+.... +++.+++ .+++ +++++||++|.|++++|++|.+
T Consensus 88 d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 158 (161)
T 2dyk_A 88 DGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWE 158 (161)
T ss_dssp ESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred ECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHH
Confidence 9998654322 222222221 247999999999996542 2334455 6777 8999999999999999999987
Q ss_pred HH
Q psy3029 266 GL 267 (617)
Q Consensus 266 ~l 267 (617)
.+
T Consensus 159 ~l 160 (161)
T 2dyk_A 159 RL 160 (161)
T ss_dssp HC
T ss_pred hC
Confidence 54
No 119
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.83 E-value=1.5e-20 Score=195.65 Aligned_cols=150 Identities=19% Similarity=0.142 Sum_probs=115.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCe-EEEEEEEecCCccccc----------ccchhhhccCCEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGEN-KVKLQVWDTAGQERFR----------SMAPMYYRNANAAL 183 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~-~~~l~i~Dt~G~e~~~----------~~~~~~~~~ad~iI 183 (617)
+|||||||+|+|++.++. ...+.++.++.......... ...+.||||||+.++. .....++..+|++|
T Consensus 19 ~nvGKSTLin~l~g~~~~-i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il 97 (308)
T 3iev_A 19 PNVGKSTLLNNLLGTKVS-IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVIL 97 (308)
T ss_dssp TTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEE
T ss_pred CCCcHHHHHHHHhCCCcc-ccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEE
Confidence 999999999999998864 23334444433322222223 5779999999986544 55677888999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC--CeEEEEcCCCCCCHHHHHH
Q psy3029 184 LVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG--GTYYETSALQDQGIEDVFL 261 (617)
Q Consensus 184 lV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g--~~~~evSAktg~gI~eLf~ 261 (617)
+|+|++++.++.....|+..+.. ..+|+++|+||+|+........+....+...++ .+++++||++|.|++++++
T Consensus 98 ~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~ 174 (308)
T 3iev_A 98 FMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVK 174 (308)
T ss_dssp EEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHH
T ss_pred EEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHH
Confidence 99999998888888778887766 347999999999997444555666667777775 6899999999999999999
Q ss_pred HHHHHHH
Q psy3029 262 NVSKGLI 268 (617)
Q Consensus 262 ~I~~~l~ 268 (617)
.|.+.+.
T Consensus 175 ~l~~~l~ 181 (308)
T 3iev_A 175 TILKYLP 181 (308)
T ss_dssp HHHHHSC
T ss_pred HHHHhCc
Confidence 9988763
No 120
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.82 E-value=1.2e-19 Score=173.60 Aligned_cols=155 Identities=21% Similarity=0.223 Sum_probs=117.1
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...++|+++|+ +|||||||+++|++.. ...+.++.+.++.......+. .+.+||
T Consensus 21 ~~~~~i~v~G~----------------------~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~i~D 74 (195)
T 3pqc_A 21 PLKGEVAFVGR----------------------SNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNS---KYYFVD 74 (195)
T ss_dssp CTTCEEEEEEB----------------------TTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETT---TEEEEE
T ss_pred CCCeEEEEECC----------------------CCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEECC---cEEEEE
Confidence 34579999999 9999999999999987 456667777665554444433 478999
Q ss_pred cCC----------cccccccchhhhccC---CEEEEEEeCCChhhH--HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCc
Q psy3029 162 TAG----------QERFRSMAPMYYRNA---NAALLVFDITQYHSF--AAIKTWVKELKRNVDEPLVLCVVGNKTDLESS 226 (617)
Q Consensus 162 t~G----------~e~~~~~~~~~~~~a---d~iIlV~Dis~~~S~--~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~ 226 (617)
|+| .+.+..++..+++.+ |++++|+|+++..+. ..+.+|+... .+|+++|+||+|+...
T Consensus 75 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 75 LPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKM 148 (195)
T ss_dssp CCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCG
T ss_pred CCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCCh
Confidence 999 666777778888776 999999999876443 3344555442 4799999999999654
Q ss_pred c--ccCHHHHHHHHHhcC-CeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 227 R--EVNREEAFHYSKSIG-GTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 227 ~--~v~~~e~~~~~~~~g-~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
. ....+++..++...+ ++++++||++|.||+++|++|.+.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 149 SERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp GGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 3 233345556666644 69999999999999999999988763
No 121
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.81 E-value=1.1e-19 Score=184.35 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=116.8
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..++|+++|. +|||||||+|+|++..+.....+ |.++..+...+......+.+|||
T Consensus 4 ~~~kI~lvG~----------------------~nvGKTsL~n~l~g~~~~~~~~p--g~tv~~~~~~~~~~~~~~~l~Dt 59 (258)
T 3a1s_A 4 HMVKVALAGC----------------------PNVGKTSLFNALTGTKQYVANWP--GVTVEKKEGVFTYKGYTINLIDL 59 (258)
T ss_dssp EEEEEEEECC----------------------TTSSHHHHHHHHHTTCEEEEECT--TSCCEEEEEEEEETTEEEEEEEC
T ss_pred CceEEEEECC----------------------CCCCHHHHHHHHHCCCCcccCCC--CceEEEEEEEEEECCeEEEEEEC
Confidence 3468888888 99999999999998776433344 44444444444333478999999
Q ss_pred CCccccccc------chhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHH
Q psy3029 163 AGQERFRSM------APMYY--RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEA 234 (617)
Q Consensus 163 ~G~e~~~~~------~~~~~--~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~ 234 (617)
||+..+... .+.|+ ..+|++|+|+|+++.++. ..|+..+.+ ..+|+++|+||+|+...+.+.. +.
T Consensus 60 pG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~ 132 (258)
T 3a1s_A 60 PGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DR 132 (258)
T ss_dssp CCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CH
T ss_pred CCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchHH-HH
Confidence 999877653 35666 589999999999986543 346566554 3479999999999865444432 35
Q ss_pred HHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 235 ~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
..+++.++++++++||++|.|++++|+.|.+.+.
T Consensus 133 ~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 133 YELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 6788889999999999999999999999988653
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.80 E-value=5.5e-20 Score=187.85 Aligned_cols=143 Identities=20% Similarity=0.152 Sum_probs=109.0
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccccc------ccchhhhc--cCCEEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFR------SMAPMYYR--NANAALLVF 186 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~------~~~~~~~~--~ad~iIlV~ 186 (617)
+|||||||+|+|++..+... ..+|.++..+...+.. .+.+.+|||||++.+. .+.+.|+. .+|++|+|+
T Consensus 12 ~nvGKSTL~n~L~g~~~~v~--~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~ 88 (272)
T 3b1v_A 12 PNSGKTSLFNLITGHNQRVG--NWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVV 88 (272)
T ss_dssp TTSSHHHHHHHHHCCCCCCC--SSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEE
T ss_pred CCCCHHHHHHHHHCCCCccc--CCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEe
Confidence 99999999999998764322 3345555555555665 6789999999998775 34566775 699999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 187 DITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 187 Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
|+++.+++ ..|+..+.+ ..+|++||+||+|+...+.+. .+...+++.++++++++||++|.||+++|++|.+.
T Consensus 89 D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 161 (272)
T 3b1v_A 89 DATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHT 161 (272)
T ss_dssp EGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHS
T ss_pred cCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 99886543 456666554 347999999999986544433 24567888889999999999999999999999764
Q ss_pred H
Q psy3029 267 L 267 (617)
Q Consensus 267 l 267 (617)
+
T Consensus 162 ~ 162 (272)
T 3b1v_A 162 T 162 (272)
T ss_dssp C
T ss_pred H
Confidence 3
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.80 E-value=1e-19 Score=178.88 Aligned_cols=162 Identities=14% Similarity=0.085 Sum_probs=115.0
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEEC-CeEEEEEEE
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG-ENKVKLQVW 160 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~-~~~~~l~i~ 160 (617)
...++|+++|. +|||||||+|+|++..+.....++.|.+.......+. .....+.||
T Consensus 27 ~~~~~i~v~G~----------------------~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~ 84 (223)
T 4dhe_A 27 TVQPEIAFAGR----------------------SNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLV 84 (223)
T ss_dssp CCSCEEEEEES----------------------CHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEE
T ss_pred CCCCEEEEEcC----------------------CCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEE
Confidence 45679999999 9999999999999987444555566655555455554 445679999
Q ss_pred ecCCc----------ccccccchhhhcc---CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcc
Q psy3029 161 DTAGQ----------ERFRSMAPMYYRN---ANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSR 227 (617)
Q Consensus 161 Dt~G~----------e~~~~~~~~~~~~---ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~ 227 (617)
||+|. +.+..++..|+.. +|++|+|+|++++.+.. ...|+..+.. ..+|++||+||+|+....
T Consensus 85 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~ 160 (223)
T 4dhe_A 85 DLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQ 160 (223)
T ss_dssp ECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHH
T ss_pred cCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChh
Confidence 99994 4445666677776 78899999998764422 2345555544 347999999999997643
Q ss_pred ccC--HHHHHHHHHh-------cCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 228 EVN--REEAFHYSKS-------IGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 228 ~v~--~~e~~~~~~~-------~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
... .++..+.... .+++++++||++|.||+++|++|.+.+..
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 161 ESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 321 1222222222 45689999999999999999999987744
No 124
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.79 E-value=9.3e-20 Score=184.60 Aligned_cols=143 Identities=14% Similarity=0.118 Sum_probs=108.6
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccc----------cchhhh--ccCCEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRS----------MAPMYY--RNANAA 182 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~----------~~~~~~--~~ad~i 182 (617)
+|||||||+|+|++..+.....|+.+++.....+...+. .+.+|||||...+.. +.+.|+ .++|++
T Consensus 10 ~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~v 87 (256)
T 3iby_A 10 PNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCI 87 (256)
T ss_dssp TTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEE
T ss_pred CCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEE
Confidence 999999999999998755455566666666666666554 789999999977653 456677 899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHH
Q psy3029 183 LLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLN 262 (617)
Q Consensus 183 IlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~ 262 (617)
|+|+|+++.+++..+..|+. . ..+|+++|+||+|+...+.+.. ....+++.++++++++||++|.|++++|++
T Consensus 88 i~VvDas~~~~~~~l~~~l~---~---~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~ 160 (256)
T 3iby_A 88 INVIDACHLERHLYLTSQLF---E---LGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQS 160 (256)
T ss_dssp EEEEEGGGHHHHHHHHHHHT---T---SCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHH
T ss_pred EEEeeCCCchhHHHHHHHHH---H---cCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHH
Confidence 99999998665554443332 2 3579999999999864433322 234577788999999999999999999999
Q ss_pred HHHH
Q psy3029 263 VSKG 266 (617)
Q Consensus 263 I~~~ 266 (617)
|.+.
T Consensus 161 i~~~ 164 (256)
T 3iby_A 161 LLHC 164 (256)
T ss_dssp HHTC
T ss_pred HHhh
Confidence 8764
No 125
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.78 E-value=2.5e-19 Score=183.25 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=104.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccc----------cchhhh--ccCCEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRS----------MAPMYY--RNANAA 182 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~----------~~~~~~--~~ad~i 182 (617)
+|||||||+|+|++..+.....++...+.....+...+ ..+.+|||||+..+.. +.+.|+ ..+|++
T Consensus 12 ~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~i 89 (274)
T 3i8s_A 12 PNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLL 89 (274)
T ss_dssp TTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEE
T ss_pred CCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEE
Confidence 99999999999999875444445554554444454444 4678999999877662 223333 699999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHH
Q psy3029 183 LLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLN 262 (617)
Q Consensus 183 IlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~ 262 (617)
|+|+|+++.+....+..|+. +. ++|+++|+||+|+...+.+.. ....+++.++++++++||++|.|++++++.
T Consensus 90 i~VvD~~~~~~~~~~~~~l~---~~---~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~~g~gi~el~~~ 162 (274)
T 3i8s_A 90 INVVDASNLERNLYLTLQLL---EL---GIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVSTRGRGIEALKLA 162 (274)
T ss_dssp EEEEEGGGHHHHHHHHHHHH---HH---TCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCGGGHHHHHHHHH
T ss_pred EEEecCCChHHHHHHHHHHH---hc---CCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 99999988665544444433 32 479999999999864433221 245677888999999999999999999999
Q ss_pred HHHHH
Q psy3029 263 VSKGL 267 (617)
Q Consensus 263 I~~~l 267 (617)
|.+.+
T Consensus 163 i~~~~ 167 (274)
T 3i8s_A 163 IDRYK 167 (274)
T ss_dssp HHTCC
T ss_pred HHHHH
Confidence 87644
No 126
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.78 E-value=9.9e-20 Score=178.55 Aligned_cols=142 Identities=13% Similarity=0.183 Sum_probs=107.0
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCC---ccCCCcceeEEEEEEEECCeEEEEEE
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSH---HISPTIGASFFTAKINVGENKVKLQV 159 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~---~~~~t~g~~~~~~~i~~~~~~~~l~i 159 (617)
..++|+++|+ +|||||||+++|++..+.. .+.++.+.++ ..+.+.+
T Consensus 11 ~~~~i~~~G~----------------------~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l 59 (218)
T 1nrj_B 11 YQPSIIIAGP----------------------QNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTL 59 (218)
T ss_dssp CCCEEEEECS----------------------TTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEE
T ss_pred CCCEEEEECC----------------------CCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEE
Confidence 4568999999 9999999999999887643 2444444332 4467899
Q ss_pred EecCCcccccccchhhhcc----CCEEEEEEeCC-ChhhHHHHHHHHHHHHhc----CCCCCeEEEEEECCCCCCccccC
Q psy3029 160 WDTAGQERFRSMAPMYYRN----ANAALLVFDIT-QYHSFAAIKTWVKELKRN----VDEPLVLCVVGNKTDLESSREVN 230 (617)
Q Consensus 160 ~Dt~G~e~~~~~~~~~~~~----ad~iIlV~Dis-~~~S~~~l~~~l~~i~~~----~~~~iPvIlVgNK~DL~~~~~v~ 230 (617)
|||+|++++..++..+++. +|++|+|||++ ++.+|..+..|+..+... ....+|++||+||+|+...+.+.
T Consensus 60 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 139 (218)
T 1nrj_B 60 VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 139 (218)
T ss_dssp EECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred EECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence 9999999999888888887 89999999999 888999999998887654 34568999999999998765443
Q ss_pred ------HHHHHHHHHhcCCeEEEEcCCCCCC
Q psy3029 231 ------REEAFHYSKSIGGTYYETSALQDQG 255 (617)
Q Consensus 231 ------~~e~~~~~~~~g~~~~evSAktg~g 255 (617)
.+++..++...++.++++||++|.+
T Consensus 140 ~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 140 KIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 3456677777778999999998875
No 127
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.77 E-value=5.3e-19 Score=180.39 Aligned_cols=147 Identities=19% Similarity=0.118 Sum_probs=111.8
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccc------cchhhh--ccCCEEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRS------MAPMYY--RNANAALLVF 186 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~------~~~~~~--~~ad~iIlV~ 186 (617)
+|||||||+|+|++..+.....++.+.+.....+...+. .+.+|||||+..+.. +.+.|+ .++|++|+|+
T Consensus 12 ~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~ 89 (271)
T 3k53_A 12 PNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIV 89 (271)
T ss_dssp SSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEE
T ss_pred CCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEe
Confidence 999999999999998765555666666666666665554 589999999987765 456666 6899999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 187 DITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 187 Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
|+++.. ....|+..+.... .+|+++|+||+|+...+.+... ...+.+.++++++++||++|.|++++++.|...
T Consensus 90 D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~ 163 (271)
T 3k53_A 90 DSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVEELKRMIALM 163 (271)
T ss_dssp EGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred cCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 998853 3334444544432 2799999999998644333322 557788889999999999999999999999887
Q ss_pred HHH
Q psy3029 267 LIC 269 (617)
Q Consensus 267 l~~ 269 (617)
+..
T Consensus 164 ~~~ 166 (271)
T 3k53_A 164 AEG 166 (271)
T ss_dssp HHT
T ss_pred Hhc
Confidence 643
No 128
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.77 E-value=3.9e-19 Score=184.20 Aligned_cols=145 Identities=20% Similarity=0.218 Sum_probs=99.2
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccc--------ccccchhhhccCCEEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQER--------FRSMAPMYYRNANAALLVF 186 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~--------~~~~~~~~~~~ad~iIlV~ 186 (617)
+|||||||+|+|++.++.. ..+.++.+.......+......+.||||||+.+ +......+++.+|++|+||
T Consensus 16 ~nvGKSTLln~l~g~~~~i-vs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~Vv 94 (301)
T 1wf3_A 16 PNVGKSTLLNNLLGVKVAP-ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVV 94 (301)
T ss_dssp TTSSHHHHHHHHHTSCCSC-CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred CCCCHHHHHHHHhCCceee-ecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 9999999999999987642 222222222211111222356899999999876 3445667889999999999
Q ss_pred eCCChhhHHHHHHHH-HHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHh-cC-CeEEEEcCCCCCCHHHHHHHH
Q psy3029 187 DITQYHSFAAIKTWV-KELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKS-IG-GTYYETSALQDQGIEDVFLNV 263 (617)
Q Consensus 187 Dis~~~S~~~l~~~l-~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~-~g-~~~~evSAktg~gI~eLf~~I 263 (617)
|++++.+.. +.|+ ..+.... .++|+++|+||+|+...... ....+.. .+ .+++++||++|.|++++++.|
T Consensus 95 D~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l 167 (301)
T 1wf3_A 95 DLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEPRMLSALDERQVAELKADL 167 (301)
T ss_dssp ETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEEEECCTTCHHHHHHHHHHH
T ss_pred ECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHH
Confidence 998875543 4555 4454432 35799999999999654320 1222222 23 479999999999999999998
Q ss_pred HHHH
Q psy3029 264 SKGL 267 (617)
Q Consensus 264 ~~~l 267 (617)
.+.+
T Consensus 168 ~~~l 171 (301)
T 1wf3_A 168 LALM 171 (301)
T ss_dssp HTTC
T ss_pred HHhc
Confidence 7654
No 129
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.76 E-value=1.7e-18 Score=188.57 Aligned_cols=160 Identities=16% Similarity=0.100 Sum_probs=112.8
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCC-CccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~-~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
..++|+++|+ +|||||||+|+|++..+. ....++.+.+.....+..++. .+.|||
T Consensus 174 ~~~ki~lvG~----------------------~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~D 229 (436)
T 2hjg_A 174 EVIQFCLIGR----------------------PNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVD 229 (436)
T ss_dssp TCEEEEEECS----------------------TTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETT
T ss_pred cCcEEEEEcC----------------------CCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEE
Confidence 4578888888 999999999999987652 222233333333344555554 589999
Q ss_pred cCCc----------ccccccch-hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccC
Q psy3029 162 TAGQ----------ERFRSMAP-MYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVN 230 (617)
Q Consensus 162 t~G~----------e~~~~~~~-~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~ 230 (617)
|+|+ ++|..+.. .+++.+|++|+|+|++++.+++++ +|+..+.. ..+|++||+||+|+.+.+...
T Consensus 230 T~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~ 305 (436)
T 2hjg_A 230 TAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDEST 305 (436)
T ss_dssp HHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTH
T ss_pred CCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHH
Confidence 9998 44443333 478899999999999998888775 57776654 347999999999997655544
Q ss_pred HHHHHH-----HHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 231 REEAFH-----YSKSIGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 231 ~~e~~~-----~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
.++..+ +....+++++++||++|.||+++|+.+.+.+...
T Consensus 306 ~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 306 MKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp HHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence 333322 2222367999999999999999999998877543
No 130
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.75 E-value=2.1e-19 Score=186.27 Aligned_cols=132 Identities=15% Similarity=0.118 Sum_probs=109.4
Q ss_pred HHHHHHHcCCCC-CccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChh-hHHHHH
Q psy3029 121 SMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYH-SFAAIK 198 (617)
Q Consensus 121 SLinrl~~~~~~-~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~-S~~~l~ 198 (617)
+|+.+++.+.|. ..+.||+|..+. ..+..++ ++.+||+ +++|..+++.|++++|++|+|||++++. ++..++
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688899999988 889999995543 3322222 6899999 9999999999999999999999999987 789999
Q ss_pred HHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcC--CeEEEEcCCCCCCHHHHHHHH
Q psy3029 199 TWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIG--GTYYETSALQDQGIEDVFLNV 263 (617)
Q Consensus 199 ~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g--~~~~evSAktg~gI~eLf~~I 263 (617)
+|+..+.. .++|++||+||+||.+++.+ +++.+++..++ ++++++||++|.||+++|..+
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l 167 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYL 167 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHh
Confidence 99998765 35799999999999765443 44566776666 899999999999999999765
No 131
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.75 E-value=1.8e-18 Score=189.83 Aligned_cols=157 Identities=14% Similarity=0.137 Sum_probs=98.3
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCC-CccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~-~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
..++|+|+|. +|||||||+|+|++.... ....++...++....+.+++ +.+.+||
T Consensus 232 ~~~kV~ivG~----------------------~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liD 287 (476)
T 3gee_A 232 EGVSTVIAGK----------------------PNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTD 287 (476)
T ss_dssp HCEEEEEECC----------------------TTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC
T ss_pred CCCEEEEECC----------------------CCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEE
Confidence 4578999999 999999999999987531 22223333344444555555 5799999
Q ss_pred cCCcccccccc--------hhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHH
Q psy3029 162 TAGQERFRSMA--------PMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREE 233 (617)
Q Consensus 162 t~G~e~~~~~~--------~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e 233 (617)
|+|+.++...+ ..++.++|++|+|||++++.++..+..+...+.... ++|+++|+||+|+.......
T Consensus 288 T~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~--- 362 (476)
T 3gee_A 288 TAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADAL--- 362 (476)
T ss_dssp --------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHH---
T ss_pred CCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchh---
Confidence 99987765433 346789999999999999888754433333333322 47999999999997654432
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 234 AFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 234 ~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
...+......+++++||++|.||++++++|.+.+.
T Consensus 363 ~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 363 IRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred HHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 22344332368999999999999999999998775
No 132
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.74 E-value=5.9e-18 Score=185.40 Aligned_cols=162 Identities=17% Similarity=0.111 Sum_probs=115.9
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCC-CCccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMF-SHHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~-~~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
...++|+++|+ +|||||||+|+|++... .....++.+.+.....+..++. .+.||
T Consensus 193 ~~~~ki~ivG~----------------------~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~ 248 (456)
T 4dcu_A 193 EEVIQFCLIGR----------------------PNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIV 248 (456)
T ss_dssp TTCEEEEEECS----------------------TTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEET
T ss_pred cccceeEEecC----------------------CCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEE
Confidence 34578888888 99999999999997652 1222233333333344555554 78999
Q ss_pred ecCC----------cccccccch-hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcccc
Q psy3029 161 DTAG----------QERFRSMAP-MYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREV 229 (617)
Q Consensus 161 Dt~G----------~e~~~~~~~-~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v 229 (617)
||+| +++|..+.. .+++.+|++|+|+|+++..+.. ...|+..+.. ..+|++||+||+|+...+..
T Consensus 249 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~ 324 (456)
T 4dcu_A 249 DTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE---AGKAVVIVVNKWDAVDKDES 324 (456)
T ss_dssp TGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH---TTCEEEEEEECGGGSCCCSS
T ss_pred ECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH---cCCCEEEEEEChhcCCCchH
Confidence 9999 566665544 4788999999999998854422 2345555544 34799999999999876666
Q ss_pred CHHHHHHHHHhc-----CCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 230 NREEAFHYSKSI-----GGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 230 ~~~e~~~~~~~~-----g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
..+++.+.++.. +++++++||++|.||+++|+.|.+.+....
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 325 TMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp HHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence 666666666554 579999999999999999999998775543
No 133
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.73 E-value=4e-17 Score=173.20 Aligned_cols=161 Identities=19% Similarity=0.163 Sum_probs=117.4
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
..++|+++|. +|||||||+++|++..+.....+....+.....+... ...+.+|||
T Consensus 166 ~~~~v~lvG~----------------------~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt 221 (357)
T 2e87_A 166 EIPTVVIAGH----------------------PNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDT 221 (357)
T ss_dssp SSCEEEEECS----------------------TTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEEC
T ss_pred CCCEEEEECC----------------------CCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeC
Confidence 3468889998 9999999999999876422211211122222222222 357899999
Q ss_pred CCcccccc---------cchhhhccCCEEEEEEeCCChh--hHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCH
Q psy3029 163 AGQERFRS---------MAPMYYRNANAALLVFDITQYH--SFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNR 231 (617)
Q Consensus 163 ~G~e~~~~---------~~~~~~~~ad~iIlV~Dis~~~--S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~ 231 (617)
+|...... ....+...+|++|+|+|++++. ++....+|+..+..... .+|+++|+||+|+.....+
T Consensus 222 ~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~-- 298 (357)
T 2e87_A 222 PGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI-- 298 (357)
T ss_dssp TTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH--
T ss_pred CCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH--
Confidence 99854321 1123344699999999999877 67888889988877554 5799999999999764432
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 232 EEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 232 ~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
++...++...++++++|||++|+||++++++|.+.+...
T Consensus 299 ~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 299 KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp HHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 445667777889999999999999999999999887654
No 134
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.71 E-value=1.3e-17 Score=175.48 Aligned_cols=147 Identities=15% Similarity=0.189 Sum_probs=109.7
Q ss_pred CCCCHHHHHHHHHcCCCC-Ccc-CCCcceeEEEEEEEECCeEEEEEEEecCCcc----cccccchhhhc---cCCEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFS-HHI-SPTIGASFFTAKINVGENKVKLQVWDTAGQE----RFRSMAPMYYR---NANAALLV 185 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~-~~~-~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e----~~~~~~~~~~~---~ad~iIlV 185 (617)
+|||||||+++|++.++. ..+ ..|....+. .+.+++ ...+.||||+|+. ++..+...|++ .+|++|+|
T Consensus 167 ~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g--~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~V 243 (342)
T 1lnz_A 167 PSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--MVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHV 243 (342)
T ss_dssp TTSSHHHHHHHSEEECCEESSTTSSCCCCCEE--EEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEE
T ss_pred CCCCHHHHHHHHHcCCCccccCCccccCceEE--EEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEE
Confidence 999999999999987642 122 233333322 233333 2478999999964 34445566655 59999999
Q ss_pred EeCCC---hhhHHHHHHHHHHHHhcCC--CCCeEEEEEECCCCCCccccCHHHHHHHHHhcC--CeEEEEcCCCCCCHHH
Q psy3029 186 FDITQ---YHSFAAIKTWVKELKRNVD--EPLVLCVVGNKTDLESSREVNREEAFHYSKSIG--GTYYETSALQDQGIED 258 (617)
Q Consensus 186 ~Dis~---~~S~~~l~~~l~~i~~~~~--~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g--~~~~evSAktg~gI~e 258 (617)
+|+++ +.+++.+..|+.++..+.. ..+|++||+||+|+...+ +...++++.+. ++++++||+++.||++
T Consensus 244 vD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~e 319 (342)
T 1lnz_A 244 IDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRE 319 (342)
T ss_dssp EESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHH
T ss_pred EECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCCcCHHH
Confidence 99998 7789999999999988653 358999999999986532 34456666666 6899999999999999
Q ss_pred HHHHHHHHHH
Q psy3029 259 VFLNVSKGLI 268 (617)
Q Consensus 259 Lf~~I~~~l~ 268 (617)
|+++|.+.+.
T Consensus 320 L~~~l~~~l~ 329 (342)
T 1lnz_A 320 LLFEVANQLE 329 (342)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988774
No 135
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.71 E-value=5.4e-18 Score=183.05 Aligned_cols=156 Identities=20% Similarity=0.172 Sum_probs=113.2
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCC-CccCCCcceeEEEEEEEECCeEEEEEEE
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~-~~~~~t~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
...++|+++|. .|||||||+++|++..+. ....+....+...+.+...+. ..+.+|
T Consensus 32 ~~~~kI~IvG~----------------------~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~li 88 (423)
T 3qq5_A 32 GFRRYIVVAGR----------------------RNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLV 88 (423)
T ss_dssp CCCEEEEEECS----------------------CSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEE
T ss_pred CCCEEEEEECC----------------------CCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEE
Confidence 35679999999 999999999999987752 222233333444455555543 378999
Q ss_pred ecCCccccccc-------chhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHH
Q psy3029 161 DTAGQERFRSM-------APMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREE 233 (617)
Q Consensus 161 Dt~G~e~~~~~-------~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e 233 (617)
||+|++++..+ ...++..+|++|+|||+... .....|+..+.+. ++|+++|+||+|+...+.. +.
T Consensus 89 DTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~ 160 (423)
T 3qq5_A 89 DTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--EL 160 (423)
T ss_dssp ECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HH
T ss_pred ECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HH
Confidence 99999877654 34578899999999998332 2335677776664 4799999999999766543 55
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 234 AFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 234 ~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
...+++.++++++++||++|.|++++|+.|.+.+.
T Consensus 161 ~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 161 KGLYESRYEAKVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp HHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred HHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence 66777788899999999999999999999988763
No 136
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.70 E-value=1.2e-17 Score=173.13 Aligned_cols=154 Identities=16% Similarity=0.079 Sum_probs=103.4
Q ss_pred cccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcc---------cccccchhhhcc
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQE---------RFRSMAPMYYRN 178 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e---------~~~~~~~~~~~~ 178 (617)
+++|+|.+|||||||+|+|++.++. ...+.++.++......+......+.+|||||+. .+......+++.
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~~~~-i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~ 88 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQKIS-ITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD 88 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEE-ECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhc
Confidence 3334444999999999999988652 122222222221111122234678999999987 344555677889
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC-eEEEEcCCCCCCHH
Q psy3029 179 ANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG-TYYETSALQDQGIE 257 (617)
Q Consensus 179 ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~-~~~evSAktg~gI~ 257 (617)
+|++++|+|+++ +.....|+..... ....|+++|+||+|+...+....+....++..++. .++++||+++.|++
T Consensus 89 ~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 89 VELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp EEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred CCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHH
Confidence 999999999976 3333445544333 23479999999999875222223445556666676 79999999999999
Q ss_pred HHHHHHHHHH
Q psy3029 258 DVFLNVSKGL 267 (617)
Q Consensus 258 eLf~~I~~~l 267 (617)
++++.|...+
T Consensus 164 ~l~~~i~~~l 173 (301)
T 1ega_A 164 TIAAIVRKHL 173 (301)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhC
Confidence 9999987654
No 137
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.69 E-value=1.7e-17 Score=182.10 Aligned_cols=153 Identities=18% Similarity=0.206 Sum_probs=112.5
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCC-CccCCCcceeEEEEEEEECCeEEEEEEEec
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQVWDT 162 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~-~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt 162 (617)
.++|+|+|. +|||||||+|+|++..+. ....+....++....+.+++ ..+.||||
T Consensus 243 ~~kV~ivG~----------------------pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DT 298 (482)
T 1xzp_A 243 GLRMVIVGK----------------------PNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDT 298 (482)
T ss_dssp CEEEEEECC----------------------HHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEES
T ss_pred CCEEEEECc----------------------CCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEEC
Confidence 379999999 999999999999987531 22233334444455566655 46899999
Q ss_pred CCcc-cccc--------cchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHH
Q psy3029 163 AGQE-RFRS--------MAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREE 233 (617)
Q Consensus 163 ~G~e-~~~~--------~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e 233 (617)
+|.. ++.. ....+++.+|++|+|||++++.+++... ++..+ ..+|+++|+||+|+... +..++
T Consensus 299 aG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~ 370 (482)
T 1xzp_A 299 AGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEE 370 (482)
T ss_dssp SCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHH
T ss_pred CCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHH
Confidence 9987 5542 2346788999999999999988776543 33333 24699999999999653 34444
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 234 AFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 234 ~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
+..++. .+++++++||++|.||++++++|.+.+..
T Consensus 371 ~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 371 IKNKLG-TDRHMVKISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp HHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred HHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 544432 44689999999999999999999987653
No 138
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.67 E-value=9.1e-16 Score=165.38 Aligned_cols=158 Identities=17% Similarity=0.177 Sum_probs=112.2
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEE-------------
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKI------------- 148 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i------------- 148 (617)
...++|+++|. +|+|||||+++|++..... ..+........
T Consensus 6 ~~~~~I~vvG~----------------------~~~GKSTLi~~L~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 59 (403)
T 3sjy_A 6 QPEVNIGVVGH----------------------VDHGKTTLVQAITGIWTSK----KLGYAETNIGVCESCKKPEAYVTE 59 (403)
T ss_dssp CCCCEEEEECS----------------------TTSSHHHHHHHHHSCCCCS----SSEEEEEEEEECTTSCTTTTEESS
T ss_pred CCCcEEEEECC----------------------CCCCHHHHHHHHhCccccc----ccCccccceeeccccccccceecc
Confidence 34568888888 9999999999999754221 11110000000
Q ss_pred ------EE---CCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEE
Q psy3029 149 ------NV---GENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGN 219 (617)
Q Consensus 149 ------~~---~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgN 219 (617)
.. ......+.||||||+++|......++..+|++|+|+|++++.++....+|+..+..... .|+++|+|
T Consensus 60 ~~~~~~~~~~~~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~--~~iivviN 137 (403)
T 3sjy_A 60 PSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV--KNLIIVQN 137 (403)
T ss_dssp SCCGGGTCCSCCEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEE
T ss_pred cccccccccccccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEE
Confidence 00 11237899999999999999999999999999999999988767777777776655432 48999999
Q ss_pred CCCCCCccccC--HHHHHHHHHhc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 220 KTDLESSREVN--REEAFHYSKSI---GGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 220 K~DL~~~~~v~--~~e~~~~~~~~---g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
|+|+.+..... .++..++.... +++++++||++|.||++|++.|.+.+
T Consensus 138 K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 138 KVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 99997543211 12233333322 46899999999999999999988755
No 139
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.67 E-value=5.8e-17 Score=177.12 Aligned_cols=153 Identities=21% Similarity=0.189 Sum_probs=102.6
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCC-CccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~-~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
..++|+|+|. +|||||||+|+|++..+. ....++.+.++....+.+++ ..+.+||
T Consensus 223 ~~~kV~ivG~----------------------~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liD 278 (462)
T 3geh_A 223 TGLKVAIVGR----------------------PNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLD 278 (462)
T ss_dssp HCEEEEEEEC----------------------TTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC
T ss_pred CCCEEEEEcC----------------------CCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEE
Confidence 4579999999 999999999999986532 22234444444444555555 4679999
Q ss_pred cCCcccccccc--------hhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHH
Q psy3029 162 TAGQERFRSMA--------PMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREE 233 (617)
Q Consensus 162 t~G~e~~~~~~--------~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e 233 (617)
|+|..++...+ ..++..+|++|+|+|++++.+... ..|+..+.. .|+++|+||+|+.....+. .
T Consensus 279 T~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~~-----~piivV~NK~Dl~~~~~~~--~ 350 (462)
T 3geh_A 279 TAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVKH-----RPLILVMNKIDLVEKQLIT--S 350 (462)
T ss_dssp --------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHTT-----SCEEEEEECTTSSCGGGST--T
T ss_pred CCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhccC-----CcEEEEEECCCCCcchhhH--H
Confidence 99986554332 336789999999999998776554 455555532 5999999999997654432 1
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 234 AFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 234 ~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
...+. .+.+++++||++|.|++++++.|.+.+..
T Consensus 351 ~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 351 LEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp CCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred HHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 11111 35689999999999999999999887743
No 140
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.67 E-value=7.7e-16 Score=166.21 Aligned_cols=157 Identities=17% Similarity=0.209 Sum_probs=102.5
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcC---CCCCccCC--CcceeEEEEEEEE-------
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGK---MFSHHISP--TIGASFFTAKINV------- 150 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~---~~~~~~~~--t~g~~~~~~~i~~------- 150 (617)
..++|+++|. .++|||||+++|++. .+.....+ |+...+....+..
T Consensus 7 ~~~~I~iiG~----------------------~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y 64 (408)
T 1s0u_A 7 AEVNIGMVGH----------------------VDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTY 64 (408)
T ss_dssp CCEEEEEESC----------------------TTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCE
T ss_pred CceEEEEEcC----------------------CCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccc
Confidence 4468888888 999999999999854 23333334 5555554443322
Q ss_pred ------C--C----eEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhcCCCCCeE
Q psy3029 151 ------G--E----NKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQY----HSFAAIKTWVKELKRNVDEPLVL 214 (617)
Q Consensus 151 ------~--~----~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~----~S~~~l~~~l~~i~~~~~~~iPv 214 (617)
+ + ....+.||||||+++|.......+..+|++|+|+|++++ .+++.+. .+... . ..|+
T Consensus 65 ~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l-~-~~~i 138 (408)
T 1s0u_A 65 TTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL-G-IDKI 138 (408)
T ss_dssp ESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT-T-CCCE
T ss_pred cccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc-C-CCeE
Confidence 1 1 137899999999999877766777789999999999864 3444433 22222 1 1379
Q ss_pred EEEEECCCCCCccc--cCHHHHHHHHHh---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 215 CVVGNKTDLESSRE--VNREEAFHYSKS---IGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 215 IlVgNK~DL~~~~~--v~~~e~~~~~~~---~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
++|+||+|+..... ...+++.+++.. .+++++++||++|.||++|++.|.+.+
T Consensus 139 ivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 139 IIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp EEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred EEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 99999999976433 234556666654 356899999999999999999987654
No 141
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.67 E-value=2.8e-16 Score=171.30 Aligned_cols=159 Identities=22% Similarity=0.168 Sum_probs=105.7
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCccee--EEEEEEEECCeEEEEEEE
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGAS--FFTAKINVGENKVKLQVW 160 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~--~~~~~i~~~~~~~~l~i~ 160 (617)
..++|+|+|+ +|||||||+|+|++.... ...+..|.+ .....+.+++. .+.+|
T Consensus 179 ~~~kvaivG~----------------------~gvGKSTLln~l~g~~~~-~v~~~~gtT~d~~~~~i~~~g~--~~~l~ 233 (439)
T 1mky_A 179 DAIKVAIVGR----------------------PNVGKSTLFNAILNKERA-LVSPIPGTTRDPVDDEVFIDGR--KYVFV 233 (439)
T ss_dssp SCEEEEEECS----------------------TTSSHHHHHHHHHTSTTE-EECCCC------CCEEEEETTE--EEEES
T ss_pred cCceEEEECC----------------------CCCCHHHHHHHHhCCccc-ccCCCCCCcCCceEEEEEECCE--EEEEE
Confidence 3478888888 999999999999987641 222333333 23344556665 57899
Q ss_pred ecCCccccccc------------chhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccc
Q psy3029 161 DTAGQERFRSM------------APMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSRE 228 (617)
Q Consensus 161 Dt~G~e~~~~~------------~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~ 228 (617)
||+|..++... ...+++.+|++++|+|+++..+..+. .+...+.. ..+|+++|+||+|+...+.
T Consensus 234 Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~ 309 (439)
T 1mky_A 234 DTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHRE 309 (439)
T ss_dssp SCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGG
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchh
Confidence 99998443221 13467789999999999887666542 22333332 3479999999999976554
Q ss_pred cCHHHHH-----HHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 229 VNREEAF-----HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 229 v~~~e~~-----~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
...++.. .++...+++++++||++|.||+++|+.|.+.+...
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 310 KRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp GCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 3333332 22223356999999999999999999998766543
No 142
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.67 E-value=5.8e-16 Score=164.43 Aligned_cols=153 Identities=20% Similarity=0.060 Sum_probs=101.9
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccc---------ccccchhhhccCCEEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQER---------FRSMAPMYYRNANAALLV 185 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~---------~~~~~~~~~~~ad~iIlV 185 (617)
+|||||||+|+|++..+.....+....+.....+.+++ ..+.+|||+|..+ |... ...+..+|++++|
T Consensus 188 ~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~~aD~il~V 264 (364)
T 2qtf_A 188 TNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAKYSDALILV 264 (364)
T ss_dssp TTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGGGGSSEEEEE
T ss_pred CCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHHHhCCEEEEE
Confidence 99999999999998765322222222233455666666 4678999999722 2222 2357789999999
Q ss_pred EeCCChh--hHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccC-HHHHHHHHHhc---CCeEEEEcCCCCCCHHHH
Q psy3029 186 FDITQYH--SFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVN-REEAFHYSKSI---GGTYYETSALQDQGIEDV 259 (617)
Q Consensus 186 ~Dis~~~--S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~-~~e~~~~~~~~---g~~~~evSAktg~gI~eL 259 (617)
+|++++. ....+..|...+.......+|+++|+||+|+.+..... .+.+..++..+ +.+++++||+++.|++++
T Consensus 265 vD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L 344 (364)
T 2qtf_A 265 IDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELL 344 (364)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHH
T ss_pred EECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHH
Confidence 9999876 56666666666655444457999999999986533100 11232344544 237899999999999999
Q ss_pred HHHHHHHHHHh
Q psy3029 260 FLNVSKGLICL 270 (617)
Q Consensus 260 f~~I~~~l~~~ 270 (617)
++.|.+.+...
T Consensus 345 ~~~I~~~l~~~ 355 (364)
T 2qtf_A 345 RDKIYQLATQL 355 (364)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhccc
Confidence 99998877553
No 143
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=159.70 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=103.9
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCC--CcceeEEEEEEEECCeEEEEEE
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISP--TIGASFFTAKINVGENKVKLQV 159 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~--t~g~~~~~~~i~~~~~~~~l~i 159 (617)
...++|+|+|. +|||||||+|+|++..+.....+ +...+.....+.+.+ ..+.|
T Consensus 27 ~~~~~i~lvG~----------------------~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~l 82 (239)
T 3lxx_A 27 NSQLRIVLVGK----------------------TGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVV 82 (239)
T ss_dssp -CEEEEEEECC----------------------TTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEE
T ss_pred CCceEEEEECC----------------------CCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEE
Confidence 44579999999 99999999999999887554444 333344444445554 46899
Q ss_pred EecCCcc-----------cccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC--CCCeEEEEEECCCCCCc
Q psy3029 160 WDTAGQE-----------RFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD--EPLVLCVVGNKTDLESS 226 (617)
Q Consensus 160 ~Dt~G~e-----------~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~--~~iPvIlVgNK~DL~~~ 226 (617)
|||||.. .+...+..++..+|++|+|+|+++.... ...|+..+..... ...|++||+||+|+...
T Consensus 83 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 83 VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGD 160 (239)
T ss_dssp EECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC--
T ss_pred EECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCc
Confidence 9999953 3334444556688999999998764331 1223333322111 12489999999998655
Q ss_pred cccC------HHHHHHHHHhcCCeEEEEcCCCC-----CCHHHHHHHHHHHHH
Q psy3029 227 REVN------REEAFHYSKSIGGTYYETSALQD-----QGIEDVFLNVSKGLI 268 (617)
Q Consensus 227 ~~v~------~~e~~~~~~~~g~~~~evSAktg-----~gI~eLf~~I~~~l~ 268 (617)
..+. .+.+..+++.++..++.+++..+ .++.+|++.+...+.
T Consensus 161 ~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 161 TNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp ----------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 4333 23566778888888888887754 688888888777654
No 144
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.66 E-value=2.8e-16 Score=158.15 Aligned_cols=165 Identities=15% Similarity=0.096 Sum_probs=103.3
Q ss_pred cccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEE--EEEEEECCeEEEEE
Q psy3029 81 VSNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFF--TAKINVGENKVKLQ 158 (617)
Q Consensus 81 ~~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~--~~~i~~~~~~~~l~ 158 (617)
....++|+++|. +|||||||+|+|++..+.....++.+.+.. ...+..+ ...+.
T Consensus 18 ~~~~l~I~lvG~----------------------~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~ 73 (247)
T 3lxw_A 18 GESTRRLILVGR----------------------TGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWD--KCHVE 73 (247)
T ss_dssp --CEEEEEEESS----------------------TTSSHHHHHHHHHTSCCC---------CCSCEEEEEEET--TEEEE
T ss_pred CCCceEEEEECC----------------------CCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEEC--CcEEE
Confidence 345689999999 999999999999988764433333333322 2233333 45689
Q ss_pred EEecCCc--------ccccccchhhh----ccCCEEEEEEeCCChhhH-HHHHHHHHHHHhcCCCCCeEEEEEECCCCCC
Q psy3029 159 VWDTAGQ--------ERFRSMAPMYY----RNANAALLVFDITQYHSF-AAIKTWVKELKRNVDEPLVLCVVGNKTDLES 225 (617)
Q Consensus 159 i~Dt~G~--------e~~~~~~~~~~----~~ad~iIlV~Dis~~~S~-~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~ 225 (617)
||||||. +++...+..++ ..+|++|+|+|+++.... ..+.+|+..+......+.|+|||+||+|+..
T Consensus 74 liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 74 VVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp EEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred EEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 9999997 33433333333 899999999999753211 1222344333211112479999999999965
Q ss_pred cccc------CHHHHHHHHHhcCCeEEEEcCCC-----CCCHHHHHHHHHHHHHH
Q psy3029 226 SREV------NREEAFHYSKSIGGTYYETSALQ-----DQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 226 ~~~v------~~~e~~~~~~~~g~~~~evSAkt-----g~gI~eLf~~I~~~l~~ 269 (617)
.... ..+....+...++..++.+++.. +.||++|++.|.+.+..
T Consensus 154 ~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 154 GSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp CCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 3210 01335667777888787777665 57999999998877754
No 145
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.66 E-value=9.8e-17 Score=163.83 Aligned_cols=158 Identities=14% Similarity=0.197 Sum_probs=94.0
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCC-CCcc-------CCCcceeEEEEEEEECCeE
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMF-SHHI-------SPTIGASFFTAKINVGENK 154 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~-~~~~-------~~t~g~~~~~~~i~~~~~~ 154 (617)
..++|+++|. +|||||||+|+|++... ...+ .+|++.+.....+..++..
T Consensus 7 ~~~~I~vvG~----------------------~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 64 (274)
T 3t5d_A 7 FEFTLMVVGE----------------------SGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQ 64 (274)
T ss_dssp CEEEEEEEEC----------------------TTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CC
T ss_pred cEEEEEEECC----------------------CCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeE
Confidence 3578999998 99999999999876543 3333 5777777666666555666
Q ss_pred EEEEEEecCCcc-------cccccc-------hhhhcc-------------CCEEEEEEeCCChhhHHHH-HHHHHHHHh
Q psy3029 155 VKLQVWDTAGQE-------RFRSMA-------PMYYRN-------------ANAALLVFDITQYHSFAAI-KTWVKELKR 206 (617)
Q Consensus 155 ~~l~i~Dt~G~e-------~~~~~~-------~~~~~~-------------ad~iIlV~Dis~~~S~~~l-~~~l~~i~~ 206 (617)
+.+.||||||.. .+..+. ..|+.. +|+++++++.+... +... ..++..+..
T Consensus 65 ~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~ 143 (274)
T 3t5d_A 65 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE 143 (274)
T ss_dssp EEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT
T ss_pred EEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc
Confidence 799999999973 222222 334433 78999999765522 2222 234454443
Q ss_pred cCCCCCeEEEEEECCCCCCccccC--HHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 207 NVDEPLVLCVVGNKTDLESSREVN--REEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 207 ~~~~~iPvIlVgNK~DL~~~~~v~--~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
.+|+|+|+||+|+....+.. .+.+.+.+...+++++++||+++.|+++++++|.+.+
T Consensus 144 ----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 144 ----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp ----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred ----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 57999999999986543321 1234455566788999999999999999998887643
No 146
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.65 E-value=6.5e-16 Score=156.08 Aligned_cols=161 Identities=16% Similarity=0.210 Sum_probs=104.7
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCC-CCCccCCC-cceeEEEEEEEECCeEEEEEEE
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKM-FSHHISPT-IGASFFTAKINVGENKVKLQVW 160 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~-~~~~~~~t-~g~~~~~~~i~~~~~~~~l~i~ 160 (617)
..++|+|+|. +|||||||+++|++.. +...+.++ ...+.....+...+ ..+.||
T Consensus 21 ~~~~I~lvG~----------------------~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~ii 76 (260)
T 2xtp_A 21 SELRIILVGK----------------------TGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVII 76 (260)
T ss_dssp CCEEEEEEEC----------------------TTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEE
T ss_pred CceEEEEECC----------------------CCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEE
Confidence 4579999999 9999999999999876 44334443 33344444444444 568999
Q ss_pred ecCCcccccccc-----------hhhhccCCEEEEEEeCCChhhH-HHHHHHHHHHHhcCCCCCeEEEEEE-CCCCCCcc
Q psy3029 161 DTAGQERFRSMA-----------PMYYRNANAALLVFDITQYHSF-AAIKTWVKELKRNVDEPLVLCVVGN-KTDLESSR 227 (617)
Q Consensus 161 Dt~G~e~~~~~~-----------~~~~~~ad~iIlV~Dis~~~S~-~~l~~~l~~i~~~~~~~iPvIlVgN-K~DL~~~~ 227 (617)
||||+..+.... ..+++.+|++|+|+|+++.... ..+.+|+..+..... ..|+++|+| |+|+...
T Consensus 77 DTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~vv~nK~Dl~~~- 154 (260)
T 2xtp_A 77 DTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDA-MGHTIVLFTHKEDLNGG- 154 (260)
T ss_dssp ECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGG-GGGEEEEEECGGGGTTC-
T ss_pred ECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchh-hccEEEEEEcccccCCc-
Confidence 999987654322 2367889999999999862222 223334443321111 235556665 9999743
Q ss_pred ccCH-------HHHHHHHHhcCCe---E--EEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 228 EVNR-------EEAFHYSKSIGGT---Y--YETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 228 ~v~~-------~e~~~~~~~~g~~---~--~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
.+.. +++..++..++.. + +++||+++.|++++|+.|.+.+..
T Consensus 155 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 155 SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 2211 2234455555542 2 789999999999999999988765
No 147
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.65 E-value=4.7e-16 Score=169.38 Aligned_cols=155 Identities=16% Similarity=0.169 Sum_probs=103.7
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCC--CCc-------------------------
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMF--SHH------------------------- 134 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~--~~~------------------------- 134 (617)
...++|+++|. +|+|||||+++|+...- ...
T Consensus 15 k~~~~i~iiG~----------------------~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~ 72 (439)
T 3j2k_7 15 KEHVNVVFIGH----------------------VDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDT 72 (439)
T ss_pred CceeEEEEEeC----------------------CCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhcc
Confidence 34578999999 99999999999964310 000
Q ss_pred --cCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhh---HH---HHHHHHHHHHh
Q psy3029 135 --ISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHS---FA---AIKTWVKELKR 206 (617)
Q Consensus 135 --~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S---~~---~l~~~l~~i~~ 206 (617)
.....|.++......+......+.||||||+++|...+..+++.+|++|||+|+++... |. ...+.+..+..
T Consensus 73 ~~~er~~GiTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~ 152 (439)
T 3j2k_7 73 NQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT 152 (439)
T ss_pred chhHhhcCceEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH
Confidence 00112344444444444455689999999999999888889999999999999988632 21 11222222222
Q ss_pred cCCCCCe-EEEEEECCCCCCcc------ccCHHHHHHHHHhcC------CeEEEEcCCCCCCHHHHHH
Q psy3029 207 NVDEPLV-LCVVGNKTDLESSR------EVNREEAFHYSKSIG------GTYYETSALQDQGIEDVFL 261 (617)
Q Consensus 207 ~~~~~iP-vIlVgNK~DL~~~~------~v~~~e~~~~~~~~g------~~~~evSAktg~gI~eLf~ 261 (617)
..+| +|||+||+|+.... +...++...+++.++ ++++++||++|.|++++++
T Consensus 153 ---~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 153 ---AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ---cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 2355 99999999985321 111234445555555 3699999999999999766
No 148
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.7e-16 Score=149.70 Aligned_cols=115 Identities=14% Similarity=0.236 Sum_probs=88.1
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCC---ccCCCcceeEEEEEEEECCeEEEEEE
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSH---HISPTIGASFFTAKINVGENKVKLQV 159 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~---~~~~t~g~~~~~~~i~~~~~~~~l~i 159 (617)
..++|+++|. +|||||||+++|++..+.. .+.++.+.++ ..+.+.+
T Consensus 47 ~~~~i~vvG~----------------------~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l 95 (193)
T 2ged_A 47 YQPSIIIAGP----------------------QNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTL 95 (193)
T ss_dssp CCCEEEEECC----------------------TTSSHHHHHHHHHHSSCC------------CC---------CCTTCSE
T ss_pred CCCEEEEECC----------------------CCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEE
Confidence 3469999999 9999999999999887543 2223332221 4467899
Q ss_pred EecCCcccccccchhhhcc----CCEEEEEEeCC-ChhhHHHHHHHHHHHHhc----CCCCCeEEEEEECCCCCCccc
Q psy3029 160 WDTAGQERFRSMAPMYYRN----ANAALLVFDIT-QYHSFAAIKTWVKELKRN----VDEPLVLCVVGNKTDLESSRE 228 (617)
Q Consensus 160 ~Dt~G~e~~~~~~~~~~~~----ad~iIlV~Dis-~~~S~~~l~~~l~~i~~~----~~~~iPvIlVgNK~DL~~~~~ 228 (617)
|||+|++.+...+..++.. +|++|+|||++ ++.++..+..|+..+... ....+|++||+||+|+...+.
T Consensus 96 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 96 VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp EEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred EECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 9999999998888888876 89999999999 888999998888877553 234689999999999976543
No 149
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.64 E-value=4.6e-16 Score=171.54 Aligned_cols=154 Identities=17% Similarity=0.205 Sum_probs=100.9
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCC--CC--------------------------
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMF--SH-------------------------- 133 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~--~~-------------------------- 133 (617)
...++|+++|. +|+|||||+++|+.... ..
T Consensus 31 k~~~ki~iiG~----------------------~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~ 88 (483)
T 3p26_A 31 LPHLSFVVLGH----------------------VDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQ 88 (483)
T ss_dssp CCEEEEEEESC----------------------GGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------
T ss_pred CCceEEEEECC----------------------CCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhcc
Confidence 45689999999 99999999999975411 00
Q ss_pred -ccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHH------HHHHHHHHHh
Q psy3029 134 -HISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAA------IKTWVKELKR 206 (617)
Q Consensus 134 -~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~------l~~~l~~i~~ 206 (617)
......|.++......+....+.+.||||||+++|......+++.+|++|+|+|++++.++.. ..+.+..+..
T Consensus 89 ~~~e~~~GiTi~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~ 168 (483)
T 3p26_A 89 TNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS 168 (483)
T ss_dssp ------CCSSCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH
T ss_pred chhHhhcCcceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH
Confidence 001122444444444455556789999999999999999999999999999999998754322 1122222222
Q ss_pred cCCCCCeEEEEEECCCCCCccccCHHH----HHHHHHhcC-----CeEEEEcCCCCCCHHHH
Q psy3029 207 NVDEPLVLCVVGNKTDLESSREVNREE----AFHYSKSIG-----GTYYETSALQDQGIEDV 259 (617)
Q Consensus 207 ~~~~~iPvIlVgNK~DL~~~~~v~~~e----~~~~~~~~g-----~~~~evSAktg~gI~eL 259 (617)
.. ..|+|||+||+|+...++...++ +..++..++ ++++++||++|.||+++
T Consensus 169 -~~-~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 169 -LG-IHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp -TT-CCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred -cC-CCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 22 13699999999997533322232 333444333 58999999999999864
No 150
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.64 E-value=9.8e-16 Score=172.07 Aligned_cols=147 Identities=20% Similarity=0.239 Sum_probs=102.2
Q ss_pred CCCCHHHHHHHHHcCC--CC-----Ccc------CCCcceeEEEEEEEE-----CCeEEEEEEEecCCcccccccchhhh
Q psy3029 115 LGVGKTSMVVRYIGKM--FS-----HHI------SPTIGASFFTAKINV-----GENKVKLQVWDTAGQERFRSMAPMYY 176 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~--~~-----~~~------~~t~g~~~~~~~i~~-----~~~~~~l~i~Dt~G~e~~~~~~~~~~ 176 (617)
.++|||||+++|+... +. ..+ ..+.|.++....+.+ ++..+.++||||||+.+|...+..++
T Consensus 13 ~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~~~l 92 (599)
T 3cb4_D 13 IDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSL 92 (599)
T ss_dssp C----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHHHHHH
Confidence 9999999999998521 11 111 123455544333333 45578999999999999999999999
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC---eEEEEcCCCC
Q psy3029 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG---TYYETSALQD 253 (617)
Q Consensus 177 ~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~---~~~evSAktg 253 (617)
+.+|++|+|+|+++..+++....|...+. .++|+++|+||+|+...+ ..+...++...+++ +++++||++|
T Consensus 93 ~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi~vSAktg 166 (599)
T 3cb4_D 93 AACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATDAVRCSAKTG 166 (599)
T ss_dssp HHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTTCEEECTTTC
T ss_pred HHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcceEEEeecccC
Confidence 99999999999999877777777765543 347999999999997543 12334456666676 4999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy3029 254 QGIEDVFLNVSKGL 267 (617)
Q Consensus 254 ~gI~eLf~~I~~~l 267 (617)
.||+++++.|.+.+
T Consensus 167 ~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 167 VGVQDVLERLVRDI 180 (599)
T ss_dssp TTHHHHHHHHHHHS
T ss_pred CCchhHHHHHhhcC
Confidence 99999999998765
No 151
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.63 E-value=1.2e-16 Score=169.68 Aligned_cols=151 Identities=17% Similarity=0.264 Sum_probs=86.3
Q ss_pred CCCCHHHHHHHHHcCC-CCCcc--------CCCcceeEEEEEEEECCeEEEEEEEecCCc-------ccccccch-----
Q psy3029 115 LGVGKTSMVVRYIGKM-FSHHI--------SPTIGASFFTAKINVGENKVKLQVWDTAGQ-------ERFRSMAP----- 173 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~-~~~~~--------~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~-------e~~~~~~~----- 173 (617)
+|||||||+++|++.. +...+ .+|++.++....+...+..+.+.+|||+|+ +.+..+..
T Consensus 46 ~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~ 125 (361)
T 2qag_A 46 SGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQ 125 (361)
T ss_dssp TTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHH
T ss_pred CCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHH
Confidence 9999999999987543 22222 245555544444444566778999999999 77777766
Q ss_pred --hhhccCCEE-----------EEEEeCCC-hhhHHHHH-HHHHHHHhcCCCCCeEEEEEECCCCCCccccCH--HHHHH
Q psy3029 174 --MYYRNANAA-----------LLVFDITQ-YHSFAAIK-TWVKELKRNVDEPLVLCVVGNKTDLESSREVNR--EEAFH 236 (617)
Q Consensus 174 --~~~~~ad~i-----------IlV~Dis~-~~S~~~l~-~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~--~e~~~ 236 (617)
.|++.++++ ++||++++ ..++..++ .|+..+ ...+|+|+|+||+|+...+++.. +++..
T Consensus 126 ~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~ 201 (361)
T 2qag_A 126 FERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLKERERLKKRILD 201 (361)
T ss_dssp HHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 666654433 35555544 44565555 454443 24589999999999977655544 56677
Q ss_pred HHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 237 YSKSIGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 237 ~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
++..++++++++||+++.+ ++.|..+...+...
T Consensus 202 ~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 202 EIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp HTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred HHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 7888899999999999999 88888888877553
No 152
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.63 E-value=1e-15 Score=168.57 Aligned_cols=155 Identities=15% Similarity=0.135 Sum_probs=107.3
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCC-------CCCccCCCcceeEEEEEEEECCeEE
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKM-------FSHHISPTIGASFFTAKINVGENKV 155 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~-------~~~~~~~t~g~~~~~~~i~~~~~~~ 155 (617)
..++|+++|. +++|||||+++|++.. +.....+.+..+.....+..++ .
T Consensus 18 ~~~~I~iiG~----------------------~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~ 73 (482)
T 1wb1_A 18 KNINLGIFGH----------------------IDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--Y 73 (482)
T ss_dssp EEEEEEEEEC----------------------TTSSHHHHHHHHHTTC--------------------CCCEEEETT--E
T ss_pred CCCEEEEECC----------------------CCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--E
Confidence 3578888888 9999999999999765 1222222222222222233333 6
Q ss_pred EEEEEecCCcccccccchhhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccc--cC
Q psy3029 156 KLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQ---YHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSRE--VN 230 (617)
Q Consensus 156 ~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~---~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~--v~ 230 (617)
.+.||||||+++|...+..++..+|++|+|+|+++ +.+++.+ ..+.. ..+|+++|+||+|+.++.. ..
T Consensus 74 ~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~---~~ip~IvviNK~Dl~~~~~~~~~ 146 (482)
T 1wb1_A 74 RITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM----LILDH---FNIPIIVVITKSDNAGTEEIKRT 146 (482)
T ss_dssp EEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH----HHHHH---TTCCBCEEEECTTSSCHHHHHHH
T ss_pred EEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH----HHHHH---cCCCEEEEEECCCcccchhHHHH
Confidence 79999999999998888889999999999999988 3344333 22322 2368899999999975322 12
Q ss_pred HHHHHHHHHhc----CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 231 REEAFHYSKSI----GGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 231 ~~e~~~~~~~~----g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
.+++.+++... +++++++||++|.||++|++.|.+.+.
T Consensus 147 ~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 147 EMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 33445555554 568999999999999999999988775
No 153
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.63 E-value=2.4e-15 Score=162.50 Aligned_cols=147 Identities=17% Similarity=0.170 Sum_probs=101.2
Q ss_pred CCCCHHHHHHHHHcC---CCCCccCC--CcceeEEEEEEEEC---------------C----eEEEEEEEecCCcccccc
Q psy3029 115 LGVGKTSMVVRYIGK---MFSHHISP--TIGASFFTAKINVG---------------E----NKVKLQVWDTAGQERFRS 170 (617)
Q Consensus 115 ~nVGKSSLinrl~~~---~~~~~~~~--t~g~~~~~~~i~~~---------------~----~~~~l~i~Dt~G~e~~~~ 170 (617)
.++|||||+++|++. .+.....+ |+...+....+... + ....+.||||||+++|..
T Consensus 19 ~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~ 98 (410)
T 1kk1_A 19 VDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMT 98 (410)
T ss_dssp TTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChHHHHH
Confidence 999999999999853 23333334 55555444333221 1 137899999999999887
Q ss_pred cchhhhccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccc--cCHHHHHHHHHh---c
Q psy3029 171 MAPMYYRNANAALLVFDITQY----HSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSRE--VNREEAFHYSKS---I 241 (617)
Q Consensus 171 ~~~~~~~~ad~iIlV~Dis~~----~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~--v~~~e~~~~~~~---~ 241 (617)
.....+..+|++|+|+|+++. .+++.+.. +.... ..|+++|+||+|+..... ...+++.+++.. .
T Consensus 99 ~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 172 (410)
T 1kk1_A 99 TMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQIIG--QKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAE 172 (410)
T ss_dssp HHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTT
T ss_pred HHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC--CCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcC
Confidence 777777889999999999864 34444332 22221 147999999999975432 123445555544 3
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 242 GGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 242 g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
+++++++||++|.||++|++.|...+
T Consensus 173 ~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 173 NAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp TCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 56999999999999999999987654
No 154
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.63 E-value=1.4e-15 Score=170.51 Aligned_cols=147 Identities=22% Similarity=0.253 Sum_probs=104.0
Q ss_pred CCCCHHHHHHHHHcC--CCC-----CccCC------CcceeEE----EEEEEE-CCeEEEEEEEecCCcccccccchhhh
Q psy3029 115 LGVGKTSMVVRYIGK--MFS-----HHISP------TIGASFF----TAKINV-GENKVKLQVWDTAGQERFRSMAPMYY 176 (617)
Q Consensus 115 ~nVGKSSLinrl~~~--~~~-----~~~~~------t~g~~~~----~~~i~~-~~~~~~l~i~Dt~G~e~~~~~~~~~~ 176 (617)
.++|||||+++|+.. .+. ..+.. ..|.++. ...+.. ++..+.++||||||+.+|...+..++
T Consensus 15 ~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~~ev~r~l 94 (600)
T 2ywe_A 15 VDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRAL 94 (600)
T ss_dssp --CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHHHHHHHHH
Confidence 999999999999752 111 11111 1233322 111211 45578999999999999998888999
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCC---eEEEEcCCCC
Q psy3029 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGG---TYYETSALQD 253 (617)
Q Consensus 177 ~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~---~~~evSAktg 253 (617)
+.+|++|+|+|+++..+++....|..... .++|+++|+||+|+.... ..+...++...+++ +++++||++|
T Consensus 95 ~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~~~vi~vSAktg 168 (600)
T 2ywe_A 95 AACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDPEEAILASAKEG 168 (600)
T ss_dssp HTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCGGGCEECBTTTT
T ss_pred HhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCcccEEEEEeecC
Confidence 99999999999999888887777765543 347999999999996543 12334456666676 4899999999
Q ss_pred CCHHHHHHHHHHHH
Q psy3029 254 QGIEDVFLNVSKGL 267 (617)
Q Consensus 254 ~gI~eLf~~I~~~l 267 (617)
.||+++++.|.+.+
T Consensus 169 ~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 169 IGIEEILEAIVNRI 182 (600)
T ss_dssp BSHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHhc
Confidence 99999999998765
No 155
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.61 E-value=3.1e-17 Score=181.63 Aligned_cols=148 Identities=15% Similarity=0.132 Sum_probs=103.8
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+|+|||||+++|++..+.....++++.++....+... ....+.||||||++.|..++..++..+|++|||+|+++....
T Consensus 13 ~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~ 91 (537)
T 3izy_P 13 VDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMK 91 (537)
T ss_dssp TTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCH
T ss_pred CCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccH
Confidence 9999999999999776544444554444333333222 223689999999999999999999999999999999986655
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcccc-CHHHHHHH---HHhc--CCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREV-NREEAFHY---SKSI--GGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v-~~~e~~~~---~~~~--g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
+....| ..+. ..++|++||+||+|+...... ..++...+ +..+ .++++++||++|.|+++|++.|...+
T Consensus 92 qt~e~l-~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 92 QTVESI-QHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp HHHHHH-HHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred HHHHHH-HHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 443322 2322 245799999999998643211 11122221 1222 24899999999999999999998765
No 156
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.60 E-value=2.4e-15 Score=146.14 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=100.5
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
....+|+++|+ +|||||||+++|++..+...+.++.|.++....+.+++ .+.+||
T Consensus 24 ~~~~~v~lvG~----------------------~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~D 78 (210)
T 1pui_A 24 DTGIEVAFAGR----------------------SNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVD 78 (210)
T ss_dssp SCSEEEEEEEC----------------------TTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEE
T ss_pred CCCcEEEEECC----------------------CCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEE
Confidence 34568999999 99999999999998876666677888765544444333 478999
Q ss_pred cCCccc----------ccccchhhh---ccCCEEEEEEeCCChhhHHH--HHHHHHHHHhcCCCCCeEEEEEECCCCCCc
Q psy3029 162 TAGQER----------FRSMAPMYY---RNANAALLVFDITQYHSFAA--IKTWVKELKRNVDEPLVLCVVGNKTDLESS 226 (617)
Q Consensus 162 t~G~e~----------~~~~~~~~~---~~ad~iIlV~Dis~~~S~~~--l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~ 226 (617)
|+|... +......++ ..++++++|+|++++.++.. +.+|+.. ..+|+++|+||+|+.+.
T Consensus 79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~------~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD------SNIAVLVLLTKADKLAS 152 (210)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCH
T ss_pred CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH------cCCCeEEEEecccCCCc
Confidence 999742 233333444 47899999999988765532 3344432 24789999999998653
Q ss_pred cc--cCHHHHHHHHHhcC--CeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 227 RE--VNREEAFHYSKSIG--GTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 227 ~~--v~~~e~~~~~~~~g--~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
.+ ...+.+..++...+ +.++++||+++.|++++++.|.+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 153 GARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp HHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 22 11234555555554 4788999999999999999988765
No 157
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.60 E-value=1.9e-15 Score=158.07 Aligned_cols=129 Identities=17% Similarity=0.180 Sum_probs=99.7
Q ss_pred CCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHh
Q psy3029 137 PTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDIT----------QYHSFAAIKTWVKELKR 206 (617)
Q Consensus 137 ~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis----------~~~S~~~l~~~l~~i~~ 206 (617)
+|+|+.... +..+.+.+++|||+|+++++.++..|+++++++|||||++ +..++.+...|+..+..
T Consensus 147 ~TiGi~~~~----~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~ 222 (340)
T 4fid_A 147 KTTGIHEYD----FVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMT 222 (340)
T ss_dssp CCCSCEEEE----EESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHH
T ss_pred ceeeeEEEE----EEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhh
Confidence 456654332 2224588999999999999999999999999999999998 67788888888888765
Q ss_pred cC-CCCCeEEEEEECCCCCCcc---------------ccCHHHHHHHHHh-c--------------------------CC
Q psy3029 207 NV-DEPLVLCVVGNKTDLESSR---------------EVNREEAFHYSKS-I--------------------------GG 243 (617)
Q Consensus 207 ~~-~~~iPvIlVgNK~DL~~~~---------------~v~~~e~~~~~~~-~--------------------------g~ 243 (617)
.. ..++|++||+||+|+..++ ....+++.+++.. + .+
T Consensus 223 ~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i 302 (340)
T 4fid_A 223 NEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKV 302 (340)
T ss_dssp CGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEE
T ss_pred hhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcce
Confidence 43 2568999999999985321 1234555554432 2 35
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 244 TYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 244 ~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
.++++||++..||+.+|..+.+.+..
T Consensus 303 y~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 303 YTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 78899999999999999999998876
No 158
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.59 E-value=6e-16 Score=166.88 Aligned_cols=147 Identities=16% Similarity=0.124 Sum_probs=103.7
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcC--------CCCCc--c-----CCCcceeEEEEE
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGK--------MFSHH--I-----SPTIGASFFTAK 147 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~--------~~~~~--~-----~~t~g~~~~~~~ 147 (617)
..++|+++|. +++|||||+++|++. .+... . ..+.|.++....
T Consensus 10 ~~~~I~iiG~----------------------~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~ 67 (405)
T 2c78_A 10 PHVNVGTIGH----------------------VDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAH 67 (405)
T ss_dssp CEEEEEEECS----------------------TTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEE
T ss_pred CeEEEEEEcC----------------------CCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeee
Confidence 3468888888 999999999999862 22110 0 012344443344
Q ss_pred EEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCe-EEEEEECCCCCCc
Q psy3029 148 INVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLV-LCVVGNKTDLESS 226 (617)
Q Consensus 148 i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iP-vIlVgNK~DL~~~ 226 (617)
..+......+.||||||+++|......++..+|++|+|+|+++.... ...+|+..+... .+| +++|+||+|+..+
T Consensus 68 ~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~ 143 (405)
T 2c78_A 68 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDD 143 (405)
T ss_dssp EEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCC
T ss_pred eEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCc
Confidence 44444556789999999999988888899999999999999886543 334566655542 367 8899999999742
Q ss_pred ccc---CHHHHHHHHHhcC-----CeEEEEcCCCCCC
Q psy3029 227 REV---NREEAFHYSKSIG-----GTYYETSALQDQG 255 (617)
Q Consensus 227 ~~v---~~~e~~~~~~~~g-----~~~~evSAktg~g 255 (617)
... ..+++.+++..++ ++++++||++|.|
T Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 211 1234556666665 5899999999987
No 159
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.59 E-value=1.9e-15 Score=160.82 Aligned_cols=140 Identities=9% Similarity=-0.001 Sum_probs=101.2
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhH
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSF 194 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~ 194 (617)
+++|||||+++|+ ....|++..+ ..+......+.||||||+++|......+++.+|++|+|+| +. ..+
T Consensus 30 ~d~GKSTL~~~L~------~~giTi~~~~----~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~ 97 (370)
T 2elf_A 30 EKSGRTSLAANLG------KKGTSSDITM----YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-GLD 97 (370)
T ss_dssp TTSSHHHHHHTTS------EEEEESSSEE----EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCC
T ss_pred CCCCHHHHHHHHH------hCCEEEEeeE----EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCc
Confidence 9999999999998 1223333332 2233344579999999999998777788899999999999 54 334
Q ss_pred HHHHHHHHHHHhcCCCCCeE-EEEEE-CCCCCCccccCH--HHHHHHHHhcC---CeEEE--EcCCC---CCCHHHHHHH
Q psy3029 195 AAIKTWVKELKRNVDEPLVL-CVVGN-KTDLESSREVNR--EEAFHYSKSIG---GTYYE--TSALQ---DQGIEDVFLN 262 (617)
Q Consensus 195 ~~l~~~l~~i~~~~~~~iPv-IlVgN-K~DL~~~~~v~~--~e~~~~~~~~g---~~~~e--vSAkt---g~gI~eLf~~ 262 (617)
....+|+..+... .+|. ++|+| |+|+ +.+.+.. +++.++++..+ +++++ +||++ +.|+++|++.
T Consensus 98 ~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~ 173 (370)
T 2elf_A 98 AHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKAR 173 (370)
T ss_dssp HHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHH
Confidence 4455666655543 2566 88999 9999 5432222 45556665543 58999 99999 9999999999
Q ss_pred HHHHHHHh
Q psy3029 263 VSKGLICL 270 (617)
Q Consensus 263 I~~~l~~~ 270 (617)
|.+.+...
T Consensus 174 l~~~~~~~ 181 (370)
T 2elf_A 174 INEVAEKI 181 (370)
T ss_dssp HHHHHHHH
T ss_pred HHhhcccc
Confidence 98877543
No 160
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.59 E-value=3.1e-15 Score=162.73 Aligned_cols=154 Identities=17% Similarity=0.152 Sum_probs=104.5
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCC---CCc---------cCCCc------------
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMF---SHH---------ISPTI------------ 139 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~---~~~---------~~~t~------------ 139 (617)
.++|+++|. +++|||||+++|++... ... ...+.
T Consensus 24 ~~~i~iiG~----------------------~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~ 81 (434)
T 1zun_B 24 MLRFLTCGN----------------------VDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDG 81 (434)
T ss_dssp EEEEEEECC----------------------TTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHH
T ss_pred ceEEEEEEC----------------------CCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhcc
Confidence 478999999 99999999999986431 000 11121
Q ss_pred -------ceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCC
Q psy3029 140 -------GASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPL 212 (617)
Q Consensus 140 -------g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~i 212 (617)
|.++......+......+.||||||+++|...+..++..+|++|+|+|+++.... ...+|+..+.... ..
T Consensus 82 ~~~E~~rGiTi~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~~--~~ 158 (434)
T 1zun_B 82 LQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLLG--IK 158 (434)
T ss_dssp HHC-----CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHTT--CC
T ss_pred ChhHHHCCcEEEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHcC--CC
Confidence 2222212222333456799999999999988888889999999999999886532 2334554444321 13
Q ss_pred eEEEEEECCCCCCccc--c--CHHHHHHHHHhcC-----CeEEEEcCCCCCCHHHHHHH
Q psy3029 213 VLCVVGNKTDLESSRE--V--NREEAFHYSKSIG-----GTYYETSALQDQGIEDVFLN 262 (617)
Q Consensus 213 PvIlVgNK~DL~~~~~--v--~~~e~~~~~~~~g-----~~~~evSAktg~gI~eLf~~ 262 (617)
|+|+|+||+|+..... + ..++...+++.++ ++++++||++|.|++++++.
T Consensus 159 ~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 159 HIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp EEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred eEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 6999999999975211 1 2345566777777 68999999999999986543
No 161
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.59 E-value=1.9e-16 Score=172.33 Aligned_cols=156 Identities=17% Similarity=0.196 Sum_probs=103.7
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcC--CCCCcc-------------------------
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGK--MFSHHI------------------------- 135 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~--~~~~~~------------------------- 135 (617)
..++|+++|. +++|||||+++|+.. .+....
T Consensus 5 ~~~~I~iiG~----------------------~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~ 62 (435)
T 1jny_A 5 PHLNLIVIGH----------------------VDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRL 62 (435)
T ss_dssp CEEEEEEEES----------------------TTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHH
T ss_pred CEEEEEEEeC----------------------CCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccC
Confidence 3468888888 999999999999864 222110
Q ss_pred --CCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC----C
Q psy3029 136 --SPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV----D 209 (617)
Q Consensus 136 --~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~----~ 209 (617)
....|.++......+......+.||||||+++|...+..++..+|++|+|+|+++ .+|+.+..|..+..++. .
T Consensus 63 ~~E~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~ 141 (435)
T 1jny_A 63 KEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT 141 (435)
T ss_dssp HHC-----------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH
T ss_pred hHHHhcCceeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH
Confidence 0012222222222344455689999999999999888889999999999999998 66775544333322211 0
Q ss_pred CCC-eEEEEEECCCCCCcc------ccCHHHHHHHHHhcC-----CeEEEEcCCCCCCHHHHHH
Q psy3029 210 EPL-VLCVVGNKTDLESSR------EVNREEAFHYSKSIG-----GTYYETSALQDQGIEDVFL 261 (617)
Q Consensus 210 ~~i-PvIlVgNK~DL~~~~------~v~~~e~~~~~~~~g-----~~~~evSAktg~gI~eLf~ 261 (617)
..+ |++||+||+|+.... +...+++..++..++ ++++++||++|.|+.++++
T Consensus 142 ~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 142 MGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 123 689999999997521 112345666777666 6799999999999976653
No 162
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.58 E-value=6.5e-16 Score=158.93 Aligned_cols=110 Identities=16% Similarity=0.077 Sum_probs=75.4
Q ss_pred EEEEEEecCCcc-------------cccccchhhhccCCEEE-EEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEEC
Q psy3029 155 VKLQVWDTAGQE-------------RFRSMAPMYYRNANAAL-LVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNK 220 (617)
Q Consensus 155 ~~l~i~Dt~G~e-------------~~~~~~~~~~~~ad~iI-lV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK 220 (617)
..+.||||||.. .+..+...|++.++.+| +|+|+++..+......|+..+. ....|+++|+||
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~---~~~~~~i~V~NK 201 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITK 201 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC---TTCSSEEEEEEC
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC---CCCCeEEEEEEc
Confidence 579999999964 34456677888888776 6999987655444334555443 245799999999
Q ss_pred CCCCCccccCHHHHHHHHHh--cC-CeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 221 TDLESSREVNREEAFHYSKS--IG-GTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 221 ~DL~~~~~v~~~e~~~~~~~--~g-~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
+|+........+........ .+ .+++++||++|.|++++++.|.+..
T Consensus 202 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 202 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred cccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 99975543222222211111 12 3688999999999999999998744
No 163
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.58 E-value=1.6e-15 Score=163.09 Aligned_cols=149 Identities=14% Similarity=0.081 Sum_probs=101.9
Q ss_pred CCCCHHHHHHHHHcC-------CCCCc-------cCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCC
Q psy3029 115 LGVGKTSMVVRYIGK-------MFSHH-------ISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNAN 180 (617)
Q Consensus 115 ~nVGKSSLinrl~~~-------~~~~~-------~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad 180 (617)
+++|||||+++|++. .+... .....|.++....+.+......+.||||||+++|...+..+++.+|
T Consensus 12 ~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD 91 (397)
T 1d2e_A 12 VDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLD 91 (397)
T ss_dssp TTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCS
T ss_pred CCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCC
Confidence 999999999999863 11100 0012344444333444444567999999999999888888899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCe-EEEEEECCCCCCccc---cCHHHHHHHHHhcC-----CeEEEEcCC
Q psy3029 181 AALLVFDITQYHSFAAIKTWVKELKRNVDEPLV-LCVVGNKTDLESSRE---VNREEAFHYSKSIG-----GTYYETSAL 251 (617)
Q Consensus 181 ~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iP-vIlVgNK~DL~~~~~---v~~~e~~~~~~~~g-----~~~~evSAk 251 (617)
++|+|+|+++....+... ++..+.. ..+| +++|+||+|+..... ...+++.++++.++ ++++++||+
T Consensus 92 ~~ilVvda~~g~~~qt~e-~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~ 167 (397)
T 1d2e_A 92 GCILVVAANDGPMPQTRE-HLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSAL 167 (397)
T ss_dssp EEEEEEETTTCSCHHHHH-HHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHH
T ss_pred EEEEEEECCCCCCHHHHH-HHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehh
Confidence 999999999865433333 3333333 2367 789999999974221 12245566777666 589999999
Q ss_pred CCCC----------HHHHHHHHHHHH
Q psy3029 252 QDQG----------IEDVFLNVSKGL 267 (617)
Q Consensus 252 tg~g----------I~eLf~~I~~~l 267 (617)
+|.| +++|++.|.+.+
T Consensus 168 ~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 168 CALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp HHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred hcccccCCCccCCcHHHHHHHHHHhC
Confidence 9775 788888776644
No 164
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.58 E-value=2e-15 Score=167.67 Aligned_cols=117 Identities=18% Similarity=0.169 Sum_probs=81.9
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCC------------------CCCc--cCCCccee
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKM------------------FSHH--ISPTIGAS 142 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~------------------~~~~--~~~t~g~~ 142 (617)
...+|+|+|. +|||||||+++|+... +... .....|.+
T Consensus 12 ~~r~IaIiG~----------------------~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiT 69 (528)
T 3tr5_A 12 MRRTFAIISH----------------------PDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGIS 69 (528)
T ss_dssp TEEEEEEEEC----------------------TTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCS
T ss_pred cCCEEEEECC----------------------CCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCee
Confidence 3458999999 9999999999996110 0000 00011222
Q ss_pred EEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCC
Q psy3029 143 FFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTD 222 (617)
Q Consensus 143 ~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~D 222 (617)
+......+....+.+.||||||+++|......+++.+|++|+|+|+++..+.....-| ..+.. .++|+++|+||+|
T Consensus 70 i~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~D 145 (528)
T 3tr5_A 70 VTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMD 145 (528)
T ss_dssp SSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTT
T ss_pred EEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCC
Confidence 2222223333457899999999999999999999999999999999987776665544 33333 3479999999999
Q ss_pred CCC
Q psy3029 223 LES 225 (617)
Q Consensus 223 L~~ 225 (617)
+..
T Consensus 146 l~~ 148 (528)
T 3tr5_A 146 RDT 148 (528)
T ss_dssp SCC
T ss_pred Ccc
Confidence 864
No 165
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.57 E-value=6.2e-15 Score=165.66 Aligned_cols=148 Identities=22% Similarity=0.241 Sum_probs=99.3
Q ss_pred CCCCHHHHHHHHHcCCCCC----ccCCCcceeEEEEEE------------EECCeEEEEEEEecCCcccccccchhhhcc
Q psy3029 115 LGVGKTSMVVRYIGKMFSH----HISPTIGASFFTAKI------------NVGENKVKLQVWDTAGQERFRSMAPMYYRN 178 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~----~~~~t~g~~~~~~~i------------~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ 178 (617)
+++|||||+++|++..+.. ...+++|..+..+.. .+......+.||||||++.|..++..+++.
T Consensus 14 ~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~ 93 (594)
T 1g7s_A 14 VDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGAL 93 (594)
T ss_dssp TTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSSBS
T ss_pred CCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHHHHHHHHhh
Confidence 9999999999998754322 122345543322110 000111258999999999999999999999
Q ss_pred CCEEEEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccC-------------H---H-------
Q psy3029 179 ANAALLVFDITQ---YHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVN-------------R---E------- 232 (617)
Q Consensus 179 ad~iIlV~Dis~---~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~-------------~---~------- 232 (617)
+|++|+|||+++ +.+++.+.. +.. .++|+++|+||+|+....... . +
T Consensus 94 aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ 166 (594)
T 1g7s_A 94 ADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVY 166 (594)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999 566655432 222 347999999999986421100 0 0
Q ss_pred HHHHHHHhcC---------------CeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 233 EAFHYSKSIG---------------GTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 233 e~~~~~~~~g---------------~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
+......+.+ ++++++||++|.||++|+++|...+..
T Consensus 167 ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 167 ELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 1111111222 279999999999999999999887653
No 166
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.57 E-value=6.4e-15 Score=155.53 Aligned_cols=132 Identities=17% Similarity=0.133 Sum_probs=106.5
Q ss_pred cCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHH
Q psy3029 135 ISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQ----------YHSFAAIKTWVKEL 204 (617)
Q Consensus 135 ~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~----------~~S~~~l~~~l~~i 204 (617)
..+|+|+... .+.++ .+.+++|||+|++++..++..|+++++++|||||+++ ..++.+...|+..+
T Consensus 177 ~~~T~Gi~~~--~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i 252 (353)
T 1cip_A 177 RVKTTGIVET--HFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI 252 (353)
T ss_dssp CCCCCSEEEE--EEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHH
T ss_pred cCceeceEEE--EEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHH
Confidence 3567776543 33333 5789999999999999999999999999999999999 45688888888888
Q ss_pred HhcC-CCCCeEEEEEECCCCCCcc---------------ccCHHHHHHHHH-----------hcCCeEEEEcCCCCCCHH
Q psy3029 205 KRNV-DEPLVLCVVGNKTDLESSR---------------EVNREEAFHYSK-----------SIGGTYYETSALQDQGIE 257 (617)
Q Consensus 205 ~~~~-~~~iPvIlVgNK~DL~~~~---------------~v~~~e~~~~~~-----------~~g~~~~evSAktg~gI~ 257 (617)
.... ..++|+|||+||+||..++ .+..+++..++. ..++.+++|||+++.||+
T Consensus 253 ~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~ 332 (353)
T 1cip_A 253 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQ 332 (353)
T ss_dssp HTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHH
T ss_pred HcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHH
Confidence 6642 2458999999999985332 356777878876 356789999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy3029 258 DVFLNVSKGLICL 270 (617)
Q Consensus 258 eLf~~I~~~l~~~ 270 (617)
++|+++.+.+...
T Consensus 333 ~vF~~v~~~i~~~ 345 (353)
T 1cip_A 333 FVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.56 E-value=8.8e-16 Score=173.44 Aligned_cols=151 Identities=17% Similarity=0.177 Sum_probs=95.9
Q ss_pred cccCCCCCCCCHHHHHHHHHcCCCCCccC-----------------------------CCcceeEEEEEEEECCeEEEEE
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGKMFSHHIS-----------------------------PTIGASFFTAKINVGENKVKLQ 158 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~~~~~~~~-----------------------------~t~g~~~~~~~i~~~~~~~~l~ 158 (617)
+++|+|.+|||||||+++|++........ ...|+++......+......+.
T Consensus 169 kV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~~ 248 (611)
T 3izq_1 169 SFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFT 248 (611)
T ss_dssp EEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCceEE
Confidence 33333339999999999998653211000 0123333333333334456899
Q ss_pred EEecCCcccccccchhhhccCCEEEEEEeCCChh---hHH---HHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccC--
Q psy3029 159 VWDTAGQERFRSMAPMYYRNANAALLVFDITQYH---SFA---AIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVN-- 230 (617)
Q Consensus 159 i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~---S~~---~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~-- 230 (617)
||||||+++|...+..+++.+|++|+|+|+++.. +|. ...+.+..+.. .. ..|+|||+||+|+....+..
T Consensus 249 iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lg-i~~iIVVvNKiDl~~~~~~~~~ 326 (611)
T 3izq_1 249 IVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG-IHNLIIAMNKMDNVDWSQQRFE 326 (611)
T ss_dssp EEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TT-CCEEEEEEECTTTTTTCHHHHH
T ss_pred EEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cC-CCeEEEEEecccccchhHHHHH
Confidence 9999999999988888999999999999998742 111 11112222222 12 23699999999997632222
Q ss_pred --HHHHHHHHHhcC-----CeEEEEcCCCCCCHHHHH
Q psy3029 231 --REEAFHYSKSIG-----GTYYETSALQDQGIEDVF 260 (617)
Q Consensus 231 --~~e~~~~~~~~g-----~~~~evSAktg~gI~eLf 260 (617)
.+++..++..++ +++++|||++|.||.++.
T Consensus 327 ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 327 EIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp HHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred HHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 223344444444 589999999999998763
No 168
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.54 E-value=2.6e-15 Score=164.74 Aligned_cols=107 Identities=18% Similarity=0.179 Sum_probs=65.7
Q ss_pred EEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChh---hHHHHHHHHHHHHhcCCCCCe-EEEEEECCCCCCcc--
Q psy3029 154 KVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYH---SFAAIKTWVKELKRNVDEPLV-LCVVGNKTDLESSR-- 227 (617)
Q Consensus 154 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~---S~~~l~~~l~~i~~~~~~~iP-vIlVgNK~DL~~~~-- 227 (617)
...+.||||||+++|...+..++..+|++|||+|+++.. +|+...+|...+.......+| +|||+||+|+....
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 467999999999999988888899999999999999862 343222233222221123466 99999999995311
Q ss_pred ----ccCHHHHHHHHHhc-C------CeEEEEcCCCCCCHHHHH
Q psy3029 228 ----EVNREEAFHYSKSI-G------GTYYETSALQDQGIEDVF 260 (617)
Q Consensus 228 ----~v~~~e~~~~~~~~-g------~~~~evSAktg~gI~eLf 260 (617)
+...++...+++.+ + ++++++||++|.|+.+++
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11123455666665 3 569999999999998876
No 169
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.52 E-value=9.4e-15 Score=151.34 Aligned_cols=96 Identities=17% Similarity=0.125 Sum_probs=81.8
Q ss_pred cccccccchhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccC-HHHHHHHHHhcC
Q psy3029 165 QERFRSMAPMYYRNANAALLVFDITQYH-SFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVN-REEAFHYSKSIG 242 (617)
Q Consensus 165 ~e~~~~~~~~~~~~ad~iIlV~Dis~~~-S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~-~~e~~~~~~~~g 242 (617)
++++..+.+.+++++|++|+|+|++++. ++..+++|+..+.. .++|++||+||+||.++.++. .++..++++.++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 6888999999999999999999999986 89999999998765 347999999999997654322 355667777889
Q ss_pred CeEEEEcCCCCCCHHHHHHHH
Q psy3029 243 GTYYETSALQDQGIEDVFLNV 263 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I 263 (617)
++++++||++|.|+++|++.+
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l 163 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYL 163 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHhhc
Confidence 999999999999999998764
No 170
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.52 E-value=8.8e-15 Score=171.56 Aligned_cols=149 Identities=14% Similarity=0.066 Sum_probs=99.3
Q ss_pred CCCCHHHHHHHHHcC-------CCCC-------ccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCC
Q psy3029 115 LGVGKTSMVVRYIGK-------MFSH-------HISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNAN 180 (617)
Q Consensus 115 ~nVGKSSLinrl~~~-------~~~~-------~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad 180 (617)
+++|||||+++|++. .+.. ....+.|+++....+.+......+.||||||+++|......+++.+|
T Consensus 305 vDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD 384 (1289)
T 3avx_A 305 VDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMD 384 (1289)
T ss_dssp TTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSCCCS
T ss_pred CCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHhhCC
Confidence 999999999999863 1100 11234555544333444445578999999999999888888899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCe-EEEEEECCCCCCcccc---CHHHHHHHHHhcC-----CeEEEEcCC
Q psy3029 181 AALLVFDITQYHSFAAIKTWVKELKRNVDEPLV-LCVVGNKTDLESSREV---NREEAFHYSKSIG-----GTYYETSAL 251 (617)
Q Consensus 181 ~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iP-vIlVgNK~DL~~~~~v---~~~e~~~~~~~~g-----~~~~evSAk 251 (617)
++|+|+|+++....+ ..+|+..+... .+| +|||+||+|+....+. ..+++..++..++ ++++++||+
T Consensus 385 ~aILVVDAtdGv~~Q-TrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAk 460 (1289)
T 3avx_A 385 GAILVVAATDGPMPQ-TREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSAL 460 (1289)
T ss_dssp EEEEEEETTTCSCTT-HHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCST
T ss_pred EEEEEEcCCccCcHH-HHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEec
Confidence 999999998864332 23444444432 367 7899999999753221 2245566777665 589999999
Q ss_pred CC--------CCHHHHHHHHHHHH
Q psy3029 252 QD--------QGIEDVFLNVSKGL 267 (617)
Q Consensus 252 tg--------~gI~eLf~~I~~~l 267 (617)
+| .||++|++.|...+
T Consensus 461 tG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 461 KALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred cCCCCCccccccchhhHhHHhhhc
Confidence 99 45777777776543
No 171
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.52 E-value=2.4e-14 Score=149.13 Aligned_cols=144 Identities=16% Similarity=0.163 Sum_probs=112.0
Q ss_pred HHHHHcCCCCCc-------cCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCC------
Q psy3029 123 VVRYIGKMFSHH-------ISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDIT------ 189 (617)
Q Consensus 123 inrl~~~~~~~~-------~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis------ 189 (617)
+.|+....+.+. ..+|+|+.... +.+ +.+.+++|||+|+++++.++..|+++++++|||||++
T Consensus 132 l~Ri~~~~Y~PT~~Dilr~r~~TiGi~~~~--~~~--~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l 207 (327)
T 3ohm_A 132 LDRVADPSYLPTQQDVLRVRVPTTGIIEYP--FDL--QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVL 207 (327)
T ss_dssp HHHHHSTTCCCCHHHHTTCCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBC
T ss_pred HHHHhccCCCccccchhcccCceeeEEEEE--EEe--eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccc
Confidence 456666666554 56888865333 333 3588999999999999999999999999999999765
Q ss_pred ----ChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCcc----------------ccCHHHHHHHH----------
Q psy3029 190 ----QYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSR----------------EVNREEAFHYS---------- 238 (617)
Q Consensus 190 ----~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~----------------~v~~~e~~~~~---------- 238 (617)
+..++.+...|+..+.... ..++|++|++||+|+..++ .++.+++.+++
T Consensus 208 ~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~ 287 (327)
T 3ohm_A 208 VESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPD 287 (327)
T ss_dssp SSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTT
T ss_pred cccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhccc
Confidence 5566777777887776532 2458999999999996543 45677787773
Q ss_pred HhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q psy3029 239 KSIGGTYYETSALQDQGIEDVFLNVSKGLICL 270 (617)
Q Consensus 239 ~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~ 270 (617)
...++.++++||+++.||+++|..+.+.+...
T Consensus 288 ~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 288 SDKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp TTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999999999988764
No 172
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.51 E-value=4.1e-14 Score=143.39 Aligned_cols=124 Identities=20% Similarity=0.248 Sum_probs=85.5
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCccee--EEEEEEEECCeEEEEEEE
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGAS--FFTAKINVGENKVKLQVW 160 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~--~~~~~i~~~~~~~~l~i~ 160 (617)
..++|+++|. +|||||||+|+|++..+.. ..+..+.+ .....+..++ ..+.||
T Consensus 35 ~~~~I~lvG~----------------------~g~GKSSLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~--~~l~li 89 (262)
T 3def_A 35 NSMTVLVLGK----------------------GGVGKSSTVNSLIGEQVVR-VSPFQAEGLRPVMVSRTMGG--FTINII 89 (262)
T ss_dssp CEEEEEEEEC----------------------TTSSHHHHHHHHHTSCCSC-CCSSCC-CCCCEEEEEEETT--EEEEEE
T ss_pred CCcEEEEECC----------------------CCCCHHHHHHHHhCCCCcc-cCCCCCcceeeEEEEEEECC--eeEEEE
Confidence 3479999999 9999999999999877421 22222222 2333333443 589999
Q ss_pred ecCCcccccccchhhhc---------cCCEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCC--CeEEEEEECCCCCCccc
Q psy3029 161 DTAGQERFRSMAPMYYR---------NANAALLVFDITQYHSFAAI-KTWVKELKRNVDEP--LVLCVVGNKTDLESSRE 228 (617)
Q Consensus 161 Dt~G~e~~~~~~~~~~~---------~ad~iIlV~Dis~~~S~~~l-~~~l~~i~~~~~~~--iPvIlVgNK~DL~~~~~ 228 (617)
||||++++....+.+++ .+|++|+|+|++... +... ..|+..+....... .|+++|+||+|+...+.
T Consensus 90 DTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~ 168 (262)
T 3def_A 90 DTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDE 168 (262)
T ss_dssp ECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTT
T ss_pred ECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCC
Confidence 99999888776666554 789999999987654 4433 36777776654332 38999999999965444
Q ss_pred cCHH
Q psy3029 229 VNRE 232 (617)
Q Consensus 229 v~~~ 232 (617)
...+
T Consensus 169 ~~~e 172 (262)
T 3def_A 169 LSYE 172 (262)
T ss_dssp CCHH
T ss_pred ccHH
Confidence 4443
No 173
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.51 E-value=3.3e-14 Score=150.57 Aligned_cols=153 Identities=14% Similarity=0.102 Sum_probs=110.7
Q ss_pred CCCCHHHH--HHHHHcCCCCCc-------cCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEE
Q psy3029 115 LGVGKTSM--VVRYIGKMFSHH-------ISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLV 185 (617)
Q Consensus 115 ~nVGKSSL--inrl~~~~~~~~-------~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV 185 (617)
+.+.|--| +.|+....+.+. ..+|+|+... .+.++ .+.+.+|||+|++++..++..|+++++++|||
T Consensus 156 ~ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~~--~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv 231 (362)
T 1zcb_A 156 GESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEY--DFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFL 231 (362)
T ss_dssp CTTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEEE--EEEET--TEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred cccHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEEE--EeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEE
Confidence 45556555 677776655432 4467787643 33343 47899999999999999999999999999999
Q ss_pred EeCCC----------hhhHHHHHHHHHHHHhcC-CCCCeEEEEEECCCCCCcc----------------ccCHHHHHHHH
Q psy3029 186 FDITQ----------YHSFAAIKTWVKELKRNV-DEPLVLCVVGNKTDLESSR----------------EVNREEAFHYS 238 (617)
Q Consensus 186 ~Dis~----------~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~DL~~~~----------------~v~~~e~~~~~ 238 (617)
||+++ ..++.+...|+..+.... ..++|+|||+||+||..++ .+..+++..++
T Consensus 232 ~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~ 311 (362)
T 1zcb_A 232 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL 311 (362)
T ss_dssp EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred EECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHH
Confidence 99999 678999888988887642 2458999999999985432 25667777765
Q ss_pred H-----------hcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 239 K-----------SIGGTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 239 ~-----------~~g~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
. ..++.+++|||+++.||+++|+++.+.+....
T Consensus 312 ~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~ 355 (362)
T 1zcb_A 312 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN 355 (362)
T ss_dssp HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence 1 34578999999999999999999998886543
No 174
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.51 E-value=4.7e-14 Score=150.75 Aligned_cols=131 Identities=18% Similarity=0.154 Sum_probs=103.0
Q ss_pred CCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHh
Q psy3029 137 PTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQ----------YHSFAAIKTWVKELKR 206 (617)
Q Consensus 137 ~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~----------~~S~~~l~~~l~~i~~ 206 (617)
+|+|++. ..+.++ .+.++||||+|++++..++..|+++++++|||||+++ ..+|..+..|+..+..
T Consensus 203 ~TiGi~~--~~~~~~--~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~ 278 (402)
T 1azs_C 203 LTSGIFE--TKFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWN 278 (402)
T ss_dssp CCCSEEE--EEEEET--TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHT
T ss_pred ceeeeEE--EEeecC--CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHh
Confidence 4667654 334444 3889999999999999999999999999999999999 8899999999999876
Q ss_pred cC-CCCCeEEEEEECCCCCCccc---c---------------------------CHHHHHHHH-----Hh--------cC
Q psy3029 207 NV-DEPLVLCVVGNKTDLESSRE---V---------------------------NREEAFHYS-----KS--------IG 242 (617)
Q Consensus 207 ~~-~~~iPvIlVgNK~DL~~~~~---v---------------------------~~~e~~~~~-----~~--------~g 242 (617)
.. ..++|+|||+||+||..++. + ..+++..|+ .. .+
T Consensus 279 ~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~ 358 (402)
T 1azs_C 279 NRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHY 358 (402)
T ss_dssp CTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSC
T ss_pred cccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcc
Confidence 53 35689999999999854332 1 134555553 21 24
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q psy3029 243 GTYYETSALQDQGIEDVFLNVSKGLICLS 271 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~~I~~~l~~~~ 271 (617)
+.++++||+++.||+++|..+.+.+....
T Consensus 359 ~~~~~TSA~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 359 CYPHFTCAVDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEeecCcCHHHHHHHHHHHHHHHH
Confidence 56789999999999999999988876543
No 175
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.50 E-value=1.1e-15 Score=167.33 Aligned_cols=107 Identities=17% Similarity=0.118 Sum_probs=75.4
Q ss_pred CCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChh---hHH---HHHHHHHHHHhcCCCCC-eEEEEEECCCC
Q psy3029 151 GENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYH---SFA---AIKTWVKELKRNVDEPL-VLCVVGNKTDL 223 (617)
Q Consensus 151 ~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~---S~~---~l~~~l~~i~~~~~~~i-PvIlVgNK~DL 223 (617)
......+.||||||+++|......++..+|++|+|+|+++.. +|+ ...+++..+.. ..+ ++|||+||+|+
T Consensus 81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl 157 (458)
T 1f60_A 81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDS 157 (458)
T ss_dssp ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGG
T ss_pred ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccc
Confidence 334568999999999999888888999999999999998763 231 22223333332 224 49999999999
Q ss_pred CCccc----cCHHHHHHHHHhcC-----CeEEEEcCCCCCCHHHHH
Q psy3029 224 ESSRE----VNREEAFHYSKSIG-----GTYYETSALQDQGIEDVF 260 (617)
Q Consensus 224 ~~~~~----v~~~e~~~~~~~~g-----~~~~evSAktg~gI~eLf 260 (617)
....+ ...+++..++..++ ++++++||++|.|+.++.
T Consensus 158 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 158 VKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 63111 12234556666665 589999999999997553
No 176
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.50 E-value=1.7e-15 Score=166.39 Aligned_cols=142 Identities=19% Similarity=0.206 Sum_probs=94.9
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCCh---
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQY--- 191 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~--- 191 (617)
+++|||||+++|.+..+.....+++..+.....+..+ ...+.||||||++.|..++..++..+|++|||+|+++.
T Consensus 13 vd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~--~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~ 90 (501)
T 1zo1_I 13 VDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE--NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMP 90 (501)
T ss_dssp TTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT--SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCT
T ss_pred CCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC--CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccH
Confidence 9999999999998755433322222222111122222 34689999999999999999999999999999999884
Q ss_pred hhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcc--ccCHH--HHHHHHHhcC--CeEEEEcCCCCCCHHHHHHHHHH
Q psy3029 192 HSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSR--EVNRE--EAFHYSKSIG--GTYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 192 ~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~--~v~~~--e~~~~~~~~g--~~~~evSAktg~gI~eLf~~I~~ 265 (617)
.+++.+ ..+.. .++|+++|+||+|+.... .+..+ +...++..++ ++++++||++|.||++|++.|..
T Consensus 91 qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 91 QTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp TTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 343332 22222 347999999999996421 11110 0001122333 68999999999999999998753
No 177
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.49 E-value=8.7e-15 Score=151.52 Aligned_cols=159 Identities=14% Similarity=0.233 Sum_probs=86.3
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcC-CCCCcc--------CCCcceeEEEEEEEECCeE
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGK-MFSHHI--------SPTIGASFFTAKINVGENK 154 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~-~~~~~~--------~~t~g~~~~~~~i~~~~~~ 154 (617)
.++|+|+|+ +|||||||+++|.+. .+.... .++.+.......+...+..
T Consensus 18 ~~~I~lvG~----------------------nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~ 75 (301)
T 2qnr_A 18 EFTLMVVGE----------------------SGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVK 75 (301)
T ss_dssp CEEEEEEEE----------------------TTSSHHHHHHHHHC------------------------CEEEEC---CC
T ss_pred CEEEEEECC----------------------CCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcc
Confidence 468899998 999999999998875 333222 1222222111122223345
Q ss_pred EEEEEEecCCc-------ccccccch-------hhhccC-------------CEEEEEEeCCChhhHHHHHHHHHHHHhc
Q psy3029 155 VKLQVWDTAGQ-------ERFRSMAP-------MYYRNA-------------NAALLVFDITQYHSFAAIKTWVKELKRN 207 (617)
Q Consensus 155 ~~l~i~Dt~G~-------e~~~~~~~-------~~~~~a-------------d~iIlV~Dis~~~S~~~l~~~l~~i~~~ 207 (617)
..+.+|||+|+ +++..+.. .++.+. ++++++.+.+. .+|+.+.. ..+...
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l 152 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAI 152 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHH
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHH
Confidence 78999999998 56665554 555433 33444444322 23444431 222222
Q ss_pred CCCCCeEEEEEECCCCCCcccc--CHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 208 VDEPLVLCVVGNKTDLESSREV--NREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 208 ~~~~iPvIlVgNK~DL~~~~~v--~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
. ..+|+++|+||+|+...+++ ..+++.++++.++++++++||+++ |++++|..+.+.+..
T Consensus 153 ~-~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 153 H-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp T-TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred H-hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 2 34699999999999765443 245677888999999999999999 999999999887753
No 178
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.49 E-value=9.9e-14 Score=149.33 Aligned_cols=157 Identities=15% Similarity=0.081 Sum_probs=107.7
Q ss_pred ccccCCCCCCCCHHHHHHHHHcCCCC-CccC-CCcceeEEEEEEEECCeEEEEEEEecCCccc----ccccchhh---hc
Q psy3029 107 CFEANWFWLGVGKTSMVVRYIGKMFS-HHIS-PTIGASFFTAKINVGENKVKLQVWDTAGQER----FRSMAPMY---YR 177 (617)
Q Consensus 107 ~~~~i~G~~nVGKSSLinrl~~~~~~-~~~~-~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~----~~~~~~~~---~~ 177 (617)
..++|+|++|||||||+++|++.... ..+. .|.... .-.+.+++ ...+.+||++|..+ +..+...+ +.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~--~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~e 234 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPN--LGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIA 234 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCE--EEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecce--eeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHH
Confidence 35677788999999999999876431 1111 122211 22233332 25688999999743 22233333 44
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC--CCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy3029 178 NANAALLVFDITQYHSFAAIKTWVKELKRNVD--EPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQG 255 (617)
Q Consensus 178 ~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~--~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~g 255 (617)
.++.+|+|+|++ ...+..+..|..++..+.. ...|.+||+||+|+... ...+++.+.+...+++++.+||+++.|
T Consensus 235 ra~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 235 RTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAG 311 (416)
T ss_dssp SSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred HHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccC
Confidence 799999999998 5567777777777655432 13588999999998653 223444555666688999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy3029 256 IEDVFLNVSKGLIC 269 (617)
Q Consensus 256 I~eLf~~I~~~l~~ 269 (617)
+++|++.|.+.+..
T Consensus 312 i~eL~~~i~~~l~~ 325 (416)
T 1udx_A 312 LPALKEALHALVRS 325 (416)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988854
No 179
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.49 E-value=3.6e-15 Score=167.99 Aligned_cols=151 Identities=20% Similarity=0.210 Sum_probs=80.5
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCC--CCCc-------------------------
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKM--FSHH------------------------- 134 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~--~~~~------------------------- 134 (617)
...++|+++|. +|+|||||+++|+... +...
T Consensus 175 k~~~~I~iiG~----------------------~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~ 232 (592)
T 3mca_A 175 KPVVHLVVTGH----------------------VDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDT 232 (592)
T ss_dssp CCEEEEEEECC----------------------SSSTHHHHHHHHHHHHHCC----------------------------
T ss_pred CCccEEEEEcC----------------------CCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhcc
Confidence 34478888888 9999999999996321 0000
Q ss_pred --cCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChh---hH--H-HHHHHHHHHHh
Q psy3029 135 --ISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYH---SF--A-AIKTWVKELKR 206 (617)
Q Consensus 135 --~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~---S~--~-~l~~~l~~i~~ 206 (617)
.....|+++......+......+.||||||+++|...+..++..+|++|||+|++++. ++ . ...+.+..+..
T Consensus 233 ~~~E~~~GiTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~ 312 (592)
T 3mca_A 233 TEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA 312 (592)
T ss_dssp --------------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH
T ss_pred chhhhcCCeeEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH
Confidence 0012234444433444445578999999999999988888999999999999998642 11 0 01112222222
Q ss_pred cCCCCCe-EEEEEECCCCCCcccc----CHHHHHHHH-HhcCC-----eEEEEcCCCCCCHH
Q psy3029 207 NVDEPLV-LCVVGNKTDLESSREV----NREEAFHYS-KSIGG-----TYYETSALQDQGIE 257 (617)
Q Consensus 207 ~~~~~iP-vIlVgNK~DL~~~~~v----~~~e~~~~~-~~~g~-----~~~evSAktg~gI~ 257 (617)
..+| +|||+||+|+...... ..+++..++ +.+++ +++++||++|.||.
T Consensus 313 ---lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 313 ---LGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp ---SSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ---cCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 2244 8999999998642111 123344444 44555 79999999999998
No 180
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.48 E-value=6.2e-14 Score=147.98 Aligned_cols=119 Identities=19% Similarity=0.195 Sum_probs=94.0
Q ss_pred eEEEEEEEecCCcccccccchhhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhcC-CCCCeEEEEEECC
Q psy3029 153 NKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDIT----------QYHSFAAIKTWVKELKRNV-DEPLVLCVVGNKT 221 (617)
Q Consensus 153 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis----------~~~S~~~l~~~l~~i~~~~-~~~iPvIlVgNK~ 221 (617)
..+.+++|||+|++++..++..|+++++++|||||++ +..+|..+..|+..+.... ..++|++||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5789999999999999999999999999999999998 7778999999998887642 2458999999999
Q ss_pred CCCCccc--c-------------------CHHHHHHHHHh----------------cCCeEEEEcCCCCCCHHHHHHHHH
Q psy3029 222 DLESSRE--V-------------------NREEAFHYSKS----------------IGGTYYETSALQDQGIEDVFLNVS 264 (617)
Q Consensus 222 DL~~~~~--v-------------------~~~e~~~~~~~----------------~g~~~~evSAktg~gI~eLf~~I~ 264 (617)
||..++. + ..+++..++.. ..+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9853321 1 14566666432 123568999999999999999999
Q ss_pred HHHHHhh
Q psy3029 265 KGLICLS 271 (617)
Q Consensus 265 ~~l~~~~ 271 (617)
+.+....
T Consensus 341 ~~I~~~~ 347 (354)
T 2xtz_A 341 ETLRRRN 347 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8886543
No 181
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.48 E-value=1.5e-13 Score=156.98 Aligned_cols=106 Identities=18% Similarity=0.053 Sum_probs=74.4
Q ss_pred CCCCHHHHHHHHHcCCCCCccCC----------------CcceeEEEEEEEECCeEEEEEEEecCCcccccccchhhhcc
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISP----------------TIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRN 178 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~----------------t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ 178 (617)
.|+|||||+++|++......... ..++++......+....+.++||||+|+++|......+++.
T Consensus 18 ~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ 97 (665)
T 2dy1_A 18 AGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEA 97 (665)
T ss_dssp TTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhh
Confidence 99999999999984322100000 11333333333343445789999999999998888999999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCC
Q psy3029 179 ANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLE 224 (617)
Q Consensus 179 ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~ 224 (617)
+|++++|+|+++...... ..++..+.. ..+|+++|+||+|+.
T Consensus 98 ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 98 ADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp CSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred cCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence 999999999887654333 244455444 347999999999986
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.48 E-value=4e-14 Score=150.14 Aligned_cols=108 Identities=14% Similarity=0.031 Sum_probs=79.9
Q ss_pred EEEEEecCCcccc-------------cccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCC
Q psy3029 156 KLQVWDTAGQERF-------------RSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTD 222 (617)
Q Consensus 156 ~l~i~Dt~G~e~~-------------~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~D 222 (617)
.+.+|||||..++ ..+...|+.++|++|+|+|..+..... ..|+..+........|+++|+||+|
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCc
Confidence 5899999998776 556778899999999999876543222 3455555555555679999999999
Q ss_pred CCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy3029 223 LESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265 (617)
Q Consensus 223 L~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~ 265 (617)
+........+.+..+...++.+|+++|++++.++++.+..+..
T Consensus 215 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~ 257 (360)
T 3t34_A 215 LMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAA 257 (360)
T ss_dssp GCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred cCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHH
Confidence 9766555555454455567789999999999998877665443
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.47 E-value=1.3e-13 Score=140.23 Aligned_cols=124 Identities=18% Similarity=0.204 Sum_probs=84.5
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecC
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTA 163 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~ 163 (617)
.++|+++|. +|||||||+|+|++..+. .+.++.+.++....+.+......+.|||||
T Consensus 39 ~~~I~vvG~----------------------~g~GKSSLin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~iiDTp 95 (270)
T 1h65_A 39 SLTILVMGK----------------------GGVGKSSTVNSIIGERVV-SISPFQSEGPRPVMVSRSRAGFTLNIIDTP 95 (270)
T ss_dssp EEEEEEEES----------------------TTSSHHHHHHHHHTSCCS-CCCSSSCCCSSCEEEEEEETTEEEEEEECC
T ss_pred CeEEEEECC----------------------CCCCHHHHHHHHhCCCcc-cccCCCCcceeeEEEEEeeCCeEEEEEECC
Confidence 469999999 999999999999987752 222333443333333333345679999999
Q ss_pred Ccccccccchh-------h--hccCCEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCC--CeEEEEEECCCCCCccccCH
Q psy3029 164 GQERFRSMAPM-------Y--YRNANAALLVFDITQYHSFAAI-KTWVKELKRNVDEP--LVLCVVGNKTDLESSREVNR 231 (617)
Q Consensus 164 G~e~~~~~~~~-------~--~~~ad~iIlV~Dis~~~S~~~l-~~~l~~i~~~~~~~--iPvIlVgNK~DL~~~~~v~~ 231 (617)
|++++..+... + ...+|++|+|+|++.. ++... .+|+..+....... .|+++|+||+|+...+....
T Consensus 96 G~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~ 174 (270)
T 1h65_A 96 GLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY 174 (270)
T ss_dssp CSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred CCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCH
Confidence 99776543332 1 2379999999998653 34433 36777776654332 59999999999976544333
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.44 E-value=2.4e-13 Score=155.94 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=78.1
Q ss_pred EEEEEecCCccc---ccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHH
Q psy3029 156 KLQVWDTAGQER---FRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNRE 232 (617)
Q Consensus 156 ~l~i~Dt~G~e~---~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~ 232 (617)
.+.||||||... .......++.++|++|+|+|++++.+..+...|...+.. ...|+++|+||+|+.....+..+
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~e 251 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRESLIDPD 251 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGGGCSSTT
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECcccccccccChh
Confidence 589999999754 345566788999999999999988887776666544432 24689999999998644311110
Q ss_pred ----------HHHH-----HHHhc--------CCeEEEEcCC--------------CCCCHHHHHHHHHHHHH
Q psy3029 233 ----------EAFH-----YSKSI--------GGTYYETSAL--------------QDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 233 ----------e~~~-----~~~~~--------g~~~~evSAk--------------tg~gI~eLf~~I~~~l~ 268 (617)
.... +.... ..++++|||+ ++.|++++++.|.+.+.
T Consensus 252 e~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence 1111 11111 2379999999 99999999999987664
No 185
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.44 E-value=3e-13 Score=140.23 Aligned_cols=112 Identities=16% Similarity=0.083 Sum_probs=70.2
Q ss_pred EEEEEEecCCccc-------------ccccchhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCeEEEEEEC
Q psy3029 155 VKLQVWDTAGQER-------------FRSMAPMYYRNANAALLVFDITQYH-SFAAIKTWVKELKRNVDEPLVLCVVGNK 220 (617)
Q Consensus 155 ~~l~i~Dt~G~e~-------------~~~~~~~~~~~ad~iIlV~Dis~~~-S~~~l~~~l~~i~~~~~~~iPvIlVgNK 220 (617)
..+.||||||..+ +..+...++..+|++|+|+|..+.. .......++..+. ....|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~---~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD---PEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---SSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC---CCCCcEEEEEcC
Confidence 4689999999753 4456677889999999999974432 1111112223322 245799999999
Q ss_pred CCCCCccccCHHHHHHHHHhcCCeEEEEcCCC------CCCHHHHHHHHHHHHHH
Q psy3029 221 TDLESSREVNREEAFHYSKSIGGTYYETSALQ------DQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 221 ~DL~~~~~v~~~e~~~~~~~~g~~~~evSAkt------g~gI~eLf~~I~~~l~~ 269 (617)
+|+........+.+......++..++++|+.+ +.|+.++++.+...+..
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 99975443222222211112235677776654 78899999988777643
No 186
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.44 E-value=1.2e-13 Score=148.84 Aligned_cols=157 Identities=13% Similarity=0.181 Sum_probs=83.5
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCc-c-------CCCcceeEEEEEEEECCeEE
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHH-I-------SPTIGASFFTAKINVGENKV 155 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~-~-------~~t~g~~~~~~~i~~~~~~~ 155 (617)
.++|+|+|+ +|||||||+++|++..+... + .++.+.......+...+...
T Consensus 31 sf~I~lvG~----------------------sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~ 88 (418)
T 2qag_C 31 EFTLMVVGE----------------------SGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQL 88 (418)
T ss_dssp CEEEEEECC----------------------TTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CE
T ss_pred CEEEEEECC----------------------CCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCccc
Confidence 468899999 99999999999998765211 1 22333222111122223345
Q ss_pred EEEEEecCCccccc-------c------------------cchhhhccCCEEEEEEeCCCh-hhHHHHH-HHHHHHHhcC
Q psy3029 156 KLQVWDTAGQERFR-------S------------------MAPMYYRNANAALLVFDITQY-HSFAAIK-TWVKELKRNV 208 (617)
Q Consensus 156 ~l~i~Dt~G~e~~~-------~------------------~~~~~~~~ad~iIlV~Dis~~-~S~~~l~-~~l~~i~~~~ 208 (617)
.+.+||++|...+. . +.+.++.++++.+++|+.... .+++.++ .|+..+.
T Consensus 89 ~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~--- 165 (418)
T 2qag_C 89 LLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH--- 165 (418)
T ss_dssp EEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---
T ss_pred ceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---
Confidence 79999999986531 1 122344555554555554432 3455554 5776664
Q ss_pred CCCCeEEEEEECCCCCCccccCH--HHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 209 DEPLVLCVVGNKTDLESSREVNR--EEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 209 ~~~iPvIlVgNK~DL~~~~~v~~--~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
..+|+|+|+||+|+...+++.. +++.+++..++++++++||+++.+++++|..|...
T Consensus 166 -~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 166 -EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp -TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred -ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 2579999999999976655544 56777888889999999999999999887766543
No 187
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.43 E-value=5.8e-13 Score=147.94 Aligned_cols=117 Identities=16% Similarity=0.184 Sum_probs=78.2
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCC--CC------------C------ccCCCccee
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKM--FS------------H------HISPTIGAS 142 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~--~~------------~------~~~~t~g~~ 142 (617)
+..+|+|+|. +|+|||||+++|+... +. . ....+.|.+
T Consensus 12 ~~~~I~IiG~----------------------~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiT 69 (529)
T 2h5e_A 12 KRRTFAIISH----------------------PDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGIS 69 (529)
T ss_dssp TEEEEEEEEC----------------------TTSSHHHHHHHHHHSCC-------------------------------
T ss_pred CCCEEEEECC----------------------CCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcc
Confidence 4578999999 9999999999998531 10 0 001123333
Q ss_pred EEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCC
Q psy3029 143 FFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTD 222 (617)
Q Consensus 143 ~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~D 222 (617)
+......+....+.+.||||||+++|......+++.+|++|+|+|+++...... ..++..+. ..++|+++|+||+|
T Consensus 70 i~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~---~~~ipiivviNK~D 145 (529)
T 2h5e_A 70 ITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR---LRDTPILTFMNKLD 145 (529)
T ss_dssp CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT---TTTCCEEEEEECTT
T ss_pred eeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH---HcCCCEEEEEcCcC
Confidence 322223333345789999999999999888889999999999999988643222 22223322 24579999999999
Q ss_pred CCC
Q psy3029 223 LES 225 (617)
Q Consensus 223 L~~ 225 (617)
+..
T Consensus 146 l~~ 148 (529)
T 2h5e_A 146 RDI 148 (529)
T ss_dssp SCC
T ss_pred Ccc
Confidence 864
No 188
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.40 E-value=1.5e-13 Score=147.53 Aligned_cols=77 Identities=21% Similarity=0.071 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHcCCCCCccC--CCcceeEEEEEE-------------------EECC-eEEEEEEEecCCccc----c
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHIS--PTIGASFFTAKI-------------------NVGE-NKVKLQVWDTAGQER----F 168 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~--~t~g~~~~~~~i-------------------~~~~-~~~~l~i~Dt~G~e~----~ 168 (617)
+|||||||+|+|++........ .|.........+ .+++ ..+.+.||||||+.+ .
T Consensus 9 pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~a~~~ 88 (397)
T 1wxq_A 9 PNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGAHEG 88 (397)
T ss_dssp TTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC---------
T ss_pred CCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCcccchhhh
Confidence 9999999999999876321111 122222221111 1122 257899999999854 2
Q ss_pred cccch---hhhccCCEEEEEEeCCCh
Q psy3029 169 RSMAP---MYYRNANAALLVFDITQY 191 (617)
Q Consensus 169 ~~~~~---~~~~~ad~iIlV~Dis~~ 191 (617)
..+.. .+++++|++++|+|+++.
T Consensus 89 ~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 89 RGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ------CCCSSTTCSEEEEEEETTCC
T ss_pred hhHHHHHHHHHhcCCEEEEEEecccc
Confidence 22333 346899999999999875
No 189
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.39 E-value=1.4e-12 Score=149.59 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=80.4
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcC--CCC------C------------ccCCCccee
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGK--MFS------H------------HISPTIGAS 142 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~--~~~------~------------~~~~t~g~~ 142 (617)
...+|+|+|. +|+|||||+++|+.. .+. . ....|++..
T Consensus 11 ~~~~I~IvG~----------------------~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~ 68 (691)
T 1dar_A 11 RLRNIGIAAH----------------------IDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA 68 (691)
T ss_dssp GEEEEEEEEC----------------------TTSCHHHHHHHHHHHHCC----------------------------CC
T ss_pred cccEEEEECC----------------------CCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc
Confidence 4468999999 999999999999831 110 0 112222222
Q ss_pred EEEEEEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCC
Q psy3029 143 FFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTD 222 (617)
Q Consensus 143 ~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~D 222 (617)
...+....+.+.||||||+.+|...+..+++.+|++|+|+|+++..++.....|.. +.. .++|+++|+||+|
T Consensus 69 ----~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD 140 (691)
T 1dar_A 69 ----VTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMD 140 (691)
T ss_dssp ----EEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTT
T ss_pred ----eEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCC
Confidence 12222234789999999999999889999999999999999999877776665543 333 2479999999999
Q ss_pred CCC
Q psy3029 223 LES 225 (617)
Q Consensus 223 L~~ 225 (617)
+..
T Consensus 141 ~~~ 143 (691)
T 1dar_A 141 KTG 143 (691)
T ss_dssp STT
T ss_pred ccc
Confidence 864
No 190
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.34 E-value=2.5e-14 Score=140.79 Aligned_cols=57 Identities=19% Similarity=0.131 Sum_probs=45.9
Q ss_pred CeEEEEEECCCCCCccccCHHHHHHHHHhc--CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 212 LVLCVVGNKTDLESSREVNREEAFHYSKSI--GGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 212 iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~--g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
.|.+||+||+|+...+....++...++..+ +++++++||++|.|++++|+.|.+.+.
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 477999999998654444566666776654 569999999999999999999988764
No 191
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.33 E-value=3.5e-12 Score=146.20 Aligned_cols=117 Identities=17% Similarity=0.180 Sum_probs=79.7
Q ss_pred cceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHc--CCCCCc--------cCC------CcceeEEEE
Q psy3029 83 NKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIG--KMFSHH--------ISP------TIGASFFTA 146 (617)
Q Consensus 83 ~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~--~~~~~~--------~~~------t~g~~~~~~ 146 (617)
+..+|+|+|. +|+|||||+++|+. +.+... ... ..|.++...
T Consensus 9 ~~~~I~IvG~----------------------~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~ 66 (693)
T 2xex_A 9 KTRNIGIMAH----------------------IDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSA 66 (693)
T ss_dssp TEEEEEEECC----------------------GGGTHHHHHHHHHHHHSSCC-------------------------CCS
T ss_pred cceEEEEECC----------------------CCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeee
Confidence 3458888888 99999999999984 221100 000 111111111
Q ss_pred EEEECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCC
Q psy3029 147 KINVGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLES 225 (617)
Q Consensus 147 ~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~ 225 (617)
...+....+.+.||||+|+.+|...+..+++.+|++|+|+|+++..++.....|. .+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 67 ATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp EEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred eEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence 1112223468999999999999988899999999999999999887776655553 3333 2479999999999864
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.33 E-value=1.9e-13 Score=144.53 Aligned_cols=109 Identities=17% Similarity=0.090 Sum_probs=66.8
Q ss_pred EEEEEEecCCcc-------------cccccchhhhccCCEEEE-EEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEEC
Q psy3029 155 VKLQVWDTAGQE-------------RFRSMAPMYYRNANAALL-VFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNK 220 (617)
Q Consensus 155 ~~l~i~Dt~G~e-------------~~~~~~~~~~~~ad~iIl-V~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK 220 (617)
..+.||||||.. .+..+...|+.+++.+|+ |.|.+....-.. |+..+....+...|+++|+||
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~---~~~i~~~~~~~~~~~i~V~NK 206 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD---ALKVAKEVDPQGQRTIGVITK 206 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---HHHHHHHHCTTCTTEEEEEEC
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---HHHHHHHhCcCCCceEEEecc
Confidence 569999999963 344566677776655555 556554322112 222233333455799999999
Q ss_pred CCCCCccccCHHHHHH--HHHhcCC-eEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 221 TDLESSREVNREEAFH--YSKSIGG-TYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 221 ~DL~~~~~v~~~e~~~--~~~~~g~-~~~evSAktg~gI~eLf~~I~~~ 266 (617)
+|+........+.... +....++ +++++||+++.|++++++.+.+.
T Consensus 207 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 207 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred ccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence 9997543311221111 1111232 67889999999999999998763
No 193
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.33 E-value=1.3e-11 Score=141.74 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=80.1
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcC--CCCC-----------ccC---CCcceeEEEEE
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGK--MFSH-----------HIS---PTIGASFFTAK 147 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~--~~~~-----------~~~---~t~g~~~~~~~ 147 (617)
..+|+|+|. .|+|||||+++|+.. .+.. .+. ...|.++....
T Consensus 10 ~~~I~IiG~----------------------~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~ 67 (704)
T 2rdo_7 10 YRNIGISAH----------------------IDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAA 67 (704)
T ss_pred ccEEEEECC----------------------CCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeece
Confidence 357888888 999999999999742 1110 000 01223332222
Q ss_pred EEE--C-----CeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEEC
Q psy3029 148 INV--G-----ENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNK 220 (617)
Q Consensus 148 i~~--~-----~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK 220 (617)
..+ . +..+.+.||||||+.+|...+..+++.+|++|+|+|+++.........| ..+.. .++|+++|+||
T Consensus 68 ~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNK 143 (704)
T 2rdo_7 68 TTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNK 143 (704)
T ss_pred EEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeC
Confidence 222 1 2348899999999999988889999999999999999987655544434 33322 34799999999
Q ss_pred CCCCC
Q psy3029 221 TDLES 225 (617)
Q Consensus 221 ~DL~~ 225 (617)
+|+..
T Consensus 144 iD~~~ 148 (704)
T 2rdo_7 144 MDRMG 148 (704)
T ss_pred CCccc
Confidence 99853
No 194
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.32 E-value=1.7e-12 Score=127.21 Aligned_cols=104 Identities=14% Similarity=0.096 Sum_probs=69.2
Q ss_pred EEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHH
Q psy3029 155 VKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEA 234 (617)
Q Consensus 155 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~ 234 (617)
..+.+|||+|+..... .+....+.+++|+|+++... ....+...+ .+|+++|+||+|+........++.
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPEIF------RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHHHH------HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhhhh------hcCCEEEEecccCCcchhhHHHHH
Confidence 4678999998511100 11125788999999877542 111222221 258899999999864333345556
Q ss_pred HHHHHhc--CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 235 FHYSKSI--GGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 235 ~~~~~~~--g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
..+++.+ +++++++||++|.|+++++++|.+.+..
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 6666554 4689999999999999999999887643
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.30 E-value=2.4e-11 Score=128.16 Aligned_cols=136 Identities=13% Similarity=0.022 Sum_probs=83.1
Q ss_pred CCCCHHHHHHHHHcCCCCCccC--CCcceeEEEEEEEECCe---------------EEEEEEEecCCccccc----ccc-
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHIS--PTIGASFFTAKINVGEN---------------KVKLQVWDTAGQERFR----SMA- 172 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~--~t~g~~~~~~~i~~~~~---------------~~~l~i~Dt~G~e~~~----~~~- 172 (617)
||||||||+|+|++..+..... .|++.+.. .+.+.+. ...+.+|||+|+.++. .+.
T Consensus 11 pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~ 88 (363)
T 1jal_A 11 PNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGN 88 (363)
T ss_dssp TTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTC
T ss_pred CCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchHHH
Confidence 9999999999999876422211 23333322 2233332 2579999999987653 232
Q ss_pred --hhhhccCCEEEEEEeCCCh----------hhHHHHHHHHHH-------------------------------------
Q psy3029 173 --PMYYRNANAALLVFDITQY----------HSFAAIKTWVKE------------------------------------- 203 (617)
Q Consensus 173 --~~~~~~ad~iIlV~Dis~~----------~S~~~l~~~l~~------------------------------------- 203 (617)
..+++++|++++|+|+++. +.+.++..+..+
T Consensus 89 ~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~~~l~~~ 168 (363)
T 1jal_A 89 KFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFELSVMEKI 168 (363)
T ss_dssp CHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 2357899999999999862 223332211111
Q ss_pred ---HHh-------------------c-CCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCC
Q psy3029 204 ---LKR-------------------N-VDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQ 252 (617)
Q Consensus 204 ---i~~-------------------~-~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAkt 252 (617)
+.. + .....|+++|+||.|..-......+.+..++...+.+++++||+.
T Consensus 169 ~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 169 LPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 110 0 112379999999999642222335667778888899999999764
No 196
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.28 E-value=3.1e-12 Score=131.06 Aligned_cols=170 Identities=15% Similarity=0.120 Sum_probs=104.1
Q ss_pred EEecCCcc-cccccchhhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHH
Q psy3029 159 VWDTAGQE-RFRSMAPMYYRNANAALLVFDITQYHSFA--AIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235 (617)
Q Consensus 159 i~Dt~G~e-~~~~~~~~~~~~ad~iIlV~Dis~~~S~~--~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~ 235 (617)
|-..||+. +........++++|++++|+|++++.+.. .+.+|+ ..+|+++|+||+||.+... .+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence 34567764 44456677889999999999999988754 455543 2469999999999975322 23345
Q ss_pred HHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhhhcccccccccccccCCccCCCCCCcccccCCCCCCCCCCchhhh
Q psy3029 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQESLHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLTEAET 315 (617)
Q Consensus 236 ~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ss~~~~~~~~~~~ 315 (617)
++++..+++++.+||+++.|+++|++.+.+.+........ ........+
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~-------------------------------~~~~~~~~~ 121 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMR-------------------------------AKGVKPRAI 121 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHH-------------------------------HTTCCCCCE
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHHHHHHH-------------------------------hcCCCCCCc
Confidence 5666678899999999999999999988877654321100 000011235
Q ss_pred heeeeccCCCCCCCcceeeeeeecccccccceeccccCc-ccCccCCccceeeEEEEEEECCEEEEEEeecCCC
Q psy3029 316 AKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKM-FSHHISPTIGASFFTAKINVGENKVKLQLRTGLK 388 (617)
Q Consensus 316 ~v~ivG~~~~s~~~~~~~~~~g~~~vGKssi~~~~~~~~-f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~ 388 (617)
+++++|.| +||||++++++.+.. ......|.+..+. ..+.++ ..+.|--++|+.
T Consensus 122 ~v~~vG~~----------------nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~-~~~~l~DtpG~~ 176 (282)
T 1puj_A 122 RALIIGIP----------------NVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVG-KELELLDTPGIL 176 (282)
T ss_dssp EEEEEEST----------------TSSHHHHHHHHHTSCCC--------------CCEEET-TTEEEEECCCCC
T ss_pred eEEEEecC----------------CCchHHHHHHHhcCceeecCCCCCeeeee--EEEEeC-CCEEEEECcCcC
Confidence 67788877 999999999998654 2333333332222 123333 345555567764
No 197
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.20 E-value=7.3e-12 Score=132.54 Aligned_cols=105 Identities=17% Similarity=0.115 Sum_probs=69.7
Q ss_pred EEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCH--
Q psy3029 154 KVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNR-- 231 (617)
Q Consensus 154 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~-- 231 (617)
.+.+.||||+|... .....+..+|++|+|+|....+.+..+..+ + ..+|++||+||+|+........
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---~-----~~~p~ivVlNK~Dl~~~~~~~~~~ 239 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG---V-----LELADIVVVNKADGEHHKEARLAA 239 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT---S-----GGGCSEEEEECCCGGGHHHHHHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh---H-----hhcCCEEEEECCCCcChhHHHHHH
Confidence 35789999999532 223445889999999998765443222211 1 1258899999999854322111
Q ss_pred HHHHHHHH-------hcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 232 EEAFHYSK-------SIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 232 ~e~~~~~~-------~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
++...... .++.+++++||++|.||++++++|.+.+..
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 11111111 125789999999999999999999887755
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.18 E-value=4e-12 Score=134.20 Aligned_cols=103 Identities=13% Similarity=0.045 Sum_probs=62.2
Q ss_pred EEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHH
Q psy3029 155 VKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEA 234 (617)
Q Consensus 155 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~ 234 (617)
+.+.|+||+|.... .......+|++++|+|+..+.....+.. .+ ...|.++|+||+|+....... ...
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~~-~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPAR-RIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHH-HHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhHH-HHH
Confidence 46789999996321 2345678999999999887543222211 11 124789999999985321110 011
Q ss_pred HHHHH----------hcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3029 235 FHYSK----------SIGGTYYETSALQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 235 ~~~~~----------~~g~~~~evSAktg~gI~eLf~~I~~~l~~ 269 (617)
..+.. .+..+++.+||++|.|+++++++|.+.+..
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 12211 124578999999999999999999887643
No 199
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.16 E-value=3.8e-11 Score=127.60 Aligned_cols=96 Identities=22% Similarity=0.305 Sum_probs=73.7
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHH----HHHH
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF----HYSK 239 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~----~~~~ 239 (617)
..++|..+++.+++.++++|+|+|++++. ..|...+.+... ++|+++|+||+||.... ...++.. .+++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 45788899999999999999999999853 456666666554 47999999999996533 2233333 3466
Q ss_pred hcCC---eEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 240 SIGG---TYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 240 ~~g~---~~~evSAktg~gI~eLf~~I~~~ 266 (617)
..|+ +++++||++|.|++++++.|.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6787 89999999999999999988654
No 200
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.14 E-value=1.3e-10 Score=129.84 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=53.0
Q ss_pred EEEEEecCCccc-----------ccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCC
Q psy3029 156 KLQVWDTAGQER-----------FRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLE 224 (617)
Q Consensus 156 ~l~i~Dt~G~e~-----------~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~ 224 (617)
.+.||||+|... |......++..+|++|+|+|+++.........|+..+.. ...|+++|+||+|+.
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HEDKIRVVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGGGEEEEEECGGGS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCCCEEEEEECCCcc
Confidence 588999999864 445667788899999999999875444555666666543 346899999999997
Q ss_pred Cccc
Q psy3029 225 SSRE 228 (617)
Q Consensus 225 ~~~~ 228 (617)
...+
T Consensus 232 ~~~e 235 (550)
T 2qpt_A 232 ETQQ 235 (550)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 5433
No 201
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.12 E-value=1.1e-10 Score=136.56 Aligned_cols=115 Identities=19% Similarity=0.233 Sum_probs=84.3
Q ss_pred ceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcC------------CCCC------ccCCCcceeEEE
Q psy3029 84 KIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGK------------MFSH------HISPTIGASFFT 145 (617)
Q Consensus 84 ~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~------------~~~~------~~~~t~g~~~~~ 145 (617)
..+|+|+|. +|+|||||+++|+.. .+.. ....|++.....
T Consensus 19 ~rnI~IiG~----------------------~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~ 76 (842)
T 1n0u_A 19 VRNMSVIAH----------------------VDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAIS 76 (842)
T ss_dssp EEEEEEECC----------------------GGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEE
T ss_pred ccEEEEECC----------------------CCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeE
Confidence 358999999 999999999999853 1110 011233332222
Q ss_pred EEEE------------ECCeEEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCe
Q psy3029 146 AKIN------------VGENKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLV 213 (617)
Q Consensus 146 ~~i~------------~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iP 213 (617)
..+. .++..+.++||||||+.+|...+..+++.+|++|+|||+++..+++....|.... . ..+|
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p 152 (842)
T 1n0u_A 77 LYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIK 152 (842)
T ss_dssp EEEECCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCE
T ss_pred EEecccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCC
Confidence 2332 2345789999999999999999999999999999999999988887766554433 2 3479
Q ss_pred EEEEEECCCCC
Q psy3029 214 LCVVGNKTDLE 224 (617)
Q Consensus 214 vIlVgNK~DL~ 224 (617)
+++|+||+|+.
T Consensus 153 ~ilviNK~D~~ 163 (842)
T 1n0u_A 153 PVVVINKVDRA 163 (842)
T ss_dssp EEEEEECHHHH
T ss_pred eEEEEECCCcc
Confidence 99999999985
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.11 E-value=1.4e-10 Score=116.55 Aligned_cols=109 Identities=16% Similarity=-0.020 Sum_probs=68.5
Q ss_pred EEEEEEecCCcccccccch------hhhccCCEEEEEEeCCChhhHHHHH---HHHHHHHhcCCCCCeEEEEEECCCCCC
Q psy3029 155 VKLQVWDTAGQERFRSMAP------MYYRNANAALLVFDITQYHSFAAIK---TWVKELKRNVDEPLVLCVVGNKTDLES 225 (617)
Q Consensus 155 ~~l~i~Dt~G~e~~~~~~~------~~~~~ad~iIlV~Dis~~~S~~~l~---~~l~~i~~~~~~~iPvIlVgNK~DL~~ 225 (617)
+.+.||||+|......... .++.. +++|+|+|.....+..... .+...... ...+|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc--ccCCCeEEEEecccccc
Confidence 5789999999876533221 24456 8899999876543322222 11111111 12368999999999865
Q ss_pred ccccCHHHHHH----------------------------HHHhcC--CeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 226 SREVNREEAFH----------------------------YSKSIG--GTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 226 ~~~v~~~e~~~----------------------------~~~~~g--~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
..++ ++..+ ++..++ .+++++||+++.|+++++++|.+.+.
T Consensus 186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 4321 11111 123333 48999999999999999999987764
No 203
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.11 E-value=3.8e-11 Score=127.65 Aligned_cols=122 Identities=22% Similarity=0.319 Sum_probs=91.8
Q ss_pred CcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHH----HHHH
Q psy3029 164 GQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF----HYSK 239 (617)
Q Consensus 164 G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~----~~~~ 239 (617)
.+++|..+++.++..++++|+|+|++++.+ .|+..+.+... +.|+++|+||+||.... ...+... .+++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 478899999999999999999999999764 34444444443 46999999999997532 2223333 3466
Q ss_pred hcCC---eEEEEcCCCCCCHHHHHHHHHHHHHHhhhcccccccccccccCCccCCCCCCcccccCCCCCCCCCCchhhhh
Q psy3029 240 SIGG---TYYETSALQDQGIEDVFLNVSKGLICLSQESLHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLTEAETA 316 (617)
Q Consensus 240 ~~g~---~~~evSAktg~gI~eLf~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ss~~~~~~~~~~~~ 316 (617)
..|+ .++.+||++|.|++++++.|.+... ..+
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~---------------------------------------------~~~ 164 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE---------------------------------------------GGD 164 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT---------------------------------------------TSC
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhcc---------------------------------------------cCc
Confidence 6776 7899999999999999998866431 135
Q ss_pred eeeeccCCCCCCCcceeeeeeecccccccceeccccC
Q psy3029 317 KFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGK 353 (617)
Q Consensus 317 v~ivG~~~~s~~~~~~~~~~g~~~vGKssi~~~~~~~ 353 (617)
++++|.+ ++|||++++.+++.
T Consensus 165 i~~vG~~----------------nvGKStliN~L~~~ 185 (369)
T 3ec1_A 165 VYVVGCT----------------NVGKSTFINRIIEE 185 (369)
T ss_dssp EEEECCT----------------TSSHHHHHHHHHHH
T ss_pred EEEEcCC----------------CCchHHHHHHHHhh
Confidence 7788877 99999999999865
No 204
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.10 E-value=9.4e-11 Score=124.21 Aligned_cols=51 Identities=12% Similarity=0.011 Sum_probs=37.9
Q ss_pred CeEEEEEECCCC--CCc-cccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHH
Q psy3029 212 LVLCVVGNKTDL--ESS-REVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLN 262 (617)
Q Consensus 212 iPvIlVgNK~DL--~~~-~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~ 262 (617)
.|+++|+||.|. .+. +....+.+..+++..+.+++++||+.+.++.+|.+.
T Consensus 202 KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~ 255 (368)
T 2dby_A 202 KPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGE 255 (368)
T ss_dssp SCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHH
T ss_pred CCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchH
Confidence 699999999984 221 123356677888888999999999987777766554
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.06 E-value=8.9e-11 Score=123.48 Aligned_cols=104 Identities=15% Similarity=0.094 Sum_probs=65.4
Q ss_pred EEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCH--
Q psy3029 154 KVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNR-- 231 (617)
Q Consensus 154 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~-- 231 (617)
.+.+.||||+|..... ......+|++|+|+|......+..+.. ... .+|+++|+||+|+........
T Consensus 148 ~~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~~-----~~p~ivv~NK~Dl~~~~~~~~~~ 216 (341)
T 2p67_A 148 GYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKK---GLM-----EVADLIVINKDDGDNHTNVAIAR 216 (341)
T ss_dssp TCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCH---HHH-----HHCSEEEECCCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHHH---hhh-----cccCEEEEECCCCCChHHHHHHH
Confidence 3579999999975433 234689999999999876533221111 111 257899999999865322111
Q ss_pred HHHHHHHHhc-------CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 232 EEAFHYSKSI-------GGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 232 ~e~~~~~~~~-------g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
++.......+ ..+++++||++|.|++++++.|.+.+.
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1122211121 357899999999999999999988765
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.02 E-value=4.1e-10 Score=128.74 Aligned_cols=108 Identities=17% Similarity=0.079 Sum_probs=69.5
Q ss_pred EEEEEecCCccc-------------ccccchhhh-ccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECC
Q psy3029 156 KLQVWDTAGQER-------------FRSMAPMYY-RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKT 221 (617)
Q Consensus 156 ~l~i~Dt~G~e~-------------~~~~~~~~~-~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~ 221 (617)
.+.|+||||... +..+...|+ ..+|++|+|+|++....-.+...++..+. ....|+|+|+||+
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~---~~g~pvIlVlNKi 227 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITKL 227 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC---TTCSSEEEEEECT
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH---hcCCCEEEEEeCc
Confidence 478999999643 223444555 47899999999987543333222333333 3457999999999
Q ss_pred CCCCccccCHHHHHH-HH-HhcC-CeEEEEcCCCCCCHHHHHHHHHHH
Q psy3029 222 DLESSREVNREEAFH-YS-KSIG-GTYYETSALQDQGIEDVFLNVSKG 266 (617)
Q Consensus 222 DL~~~~~v~~~e~~~-~~-~~~g-~~~~evSAktg~gI~eLf~~I~~~ 266 (617)
|+............. +. ..++ .+++.+||++|.|+++|++.|.+.
T Consensus 228 Dlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 228 DLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp TSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred ccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 997654432221110 00 0123 267889999999999999998763
No 207
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.00 E-value=1.1e-09 Score=122.14 Aligned_cols=106 Identities=19% Similarity=0.158 Sum_probs=70.8
Q ss_pred CCCCHHHHHHHHHcC------------------CCCC--ccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccccchh
Q psy3029 115 LGVGKTSMVVRYIGK------------------MFSH--HISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174 (617)
Q Consensus 115 ~nVGKSSLinrl~~~------------------~~~~--~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~ 174 (617)
.++|||||..+|+.. .+.+ ......|+++....+.+..+.+.++|+||||+.+|......
T Consensus 40 vdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~r 119 (548)
T 3vqt_A 40 PDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYR 119 (548)
T ss_dssp TTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGGCSHHHHH
T ss_pred CCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHHHHHHHHH
Confidence 999999999999611 0000 00112233332233333445678999999999999999999
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCC
Q psy3029 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLE 224 (617)
Q Consensus 175 ~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~ 224 (617)
.++-+|++|+|+|+...---+...-| ..+.+ .++|+++++||+|..
T Consensus 120 aL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 120 VLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDRE 165 (548)
T ss_dssp HHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSC
T ss_pred HHHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccch
Confidence 99999999999999886544443334 33333 348999999999975
No 208
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.95 E-value=6.2e-09 Score=110.32 Aligned_cols=144 Identities=13% Similarity=0.063 Sum_probs=82.1
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccccc----cc---chhhhccCCEEEEEEe
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFR----SM---APMYYRNANAALLVFD 187 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~----~~---~~~~~~~ad~iIlV~D 187 (617)
||||||||+|+|++.+......|....+...-.+.+.+ ..++|+||||..+-. .+ .-..++++|++++|+|
T Consensus 81 PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD 158 (376)
T 4a9a_A 81 PSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILD 158 (376)
T ss_dssp CCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEE
T ss_pred CCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccc
Confidence 99999999999998764322223222333333444444 568999999974321 11 1234568999999999
Q ss_pred CCChhh-HHHHHHHHHHHHhcCCCCCeEEEEEECCCCCC--------ccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHH
Q psy3029 188 ITQYHS-FAAIKTWVKELKRNVDEPLVLCVVGNKTDLES--------SREVNREEAFHYSKSIGGTYYETSALQDQGIED 258 (617)
Q Consensus 188 is~~~S-~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~--------~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~e 258 (617)
++++.. ++.+...|..+.... ...|.+++.||+|... ......++...+...+.+..-.+-...+...++
T Consensus 159 ~~~p~~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~edd 237 (376)
T 4a9a_A 159 VNKPLHHKQIIEKELEGVGIRL-NKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDD 237 (376)
T ss_dssp TTSHHHHHHHHHHHHHHTTEEE-TCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHH
T ss_pred cCccHHHHHHHHHHHHHhhHhh-ccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHH
Confidence 998742 233333232221111 2357789999999732 123445666666665555222222223445566
Q ss_pred HHH
Q psy3029 259 VFL 261 (617)
Q Consensus 259 Lf~ 261 (617)
+.+
T Consensus 238 l~d 240 (376)
T 4a9a_A 238 LID 240 (376)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.94 E-value=8.6e-10 Score=115.74 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=63.3
Q ss_pred EEEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHH
Q psy3029 154 KVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREE 233 (617)
Q Consensus 154 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e 233 (617)
.+.+.|+||+|...-. ......+|.+++|+|.........+..++. . ++.++|+||+|+..........
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~---~-----~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIF---E-----LADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHH---H-----HCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHHh---c-----cccEEEEEchhccCchhHHHHH
Confidence 3568999999974321 234578999999999865432221211111 1 3557778999975422211112
Q ss_pred HHHHHHh----------cCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 234 AFHYSKS----------IGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 234 ~~~~~~~----------~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
...+... +..+++.+||+++.|+++|++.|.+.+.
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222221 1357899999999999999999987654
No 210
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.93 E-value=1.3e-10 Score=117.73 Aligned_cols=89 Identities=13% Similarity=0.056 Sum_probs=62.3
Q ss_pred cCCccc-ccccchhhhccCCEEEEEEeCCChhhHHH--HHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHH
Q psy3029 162 TAGQER-FRSMAPMYYRNANAALLVFDITQYHSFAA--IKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYS 238 (617)
Q Consensus 162 t~G~e~-~~~~~~~~~~~ad~iIlV~Dis~~~S~~~--l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~ 238 (617)
.||+.. ........++++|++|+|+|++++.+... +. |+ .+|.++|+||+||.+... .+...+++
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------~k~~iivlNK~DL~~~~~--~~~~~~~~ 71 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------RKETIILLNKVDIADEKT--TKKWVEFF 71 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------TSEEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------CCCcEEEEECccCCCHHH--HHHHHHHH
Confidence 356542 23456778899999999999999876542 22 22 479999999999975322 23445566
Q ss_pred HhcCCeEEEEcCCCCCCHHHHHHHH
Q psy3029 239 KSIGGTYYETSALQDQGIEDVFLNV 263 (617)
Q Consensus 239 ~~~g~~~~evSAktg~gI~eLf~~I 263 (617)
+..|+++ .+||+++.|+++|++.|
T Consensus 72 ~~~g~~v-~iSa~~~~gi~~L~~~l 95 (262)
T 3cnl_A 72 KKQGKRV-ITTHKGEPRKVLLKKLS 95 (262)
T ss_dssp HHTTCCE-EECCTTSCHHHHHHHHC
T ss_pred HHcCCeE-EEECCCCcCHHHHHHHH
Confidence 6678888 99999999999887764
No 211
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.83 E-value=3.9e-10 Score=116.42 Aligned_cols=93 Identities=20% Similarity=0.225 Sum_probs=70.4
Q ss_pred ccccccchhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcccc--CHHHHHHHHHhcC
Q psy3029 166 ERFRSMAPMYYRNANAALLVFDITQYH-SFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREV--NREEAFHYSKSIG 242 (617)
Q Consensus 166 e~~~~~~~~~~~~ad~iIlV~Dis~~~-S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v--~~~e~~~~~~~~g 242 (617)
++...+.+..+.++|.+++|+|+.+|. +...+++++..+.. ..+|++||+||+||.++... ..+.+.+++...|
T Consensus 74 ~R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g 150 (307)
T 1t9h_A 74 ERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG 150 (307)
T ss_dssp CCSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC
Confidence 455667778899999999999999766 56667777766544 34788999999999764321 1244556777789
Q ss_pred CeEEEEcCCCCCCHHHHHH
Q psy3029 243 GTYYETSALQDQGIEDVFL 261 (617)
Q Consensus 243 ~~~~evSAktg~gI~eLf~ 261 (617)
++++.+||+++.|+++|++
T Consensus 151 ~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 151 YDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp CCEEECCHHHHTTCTTTGG
T ss_pred CeEEEEecCCCCCHHHHHh
Confidence 9999999999998877653
No 212
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.74 E-value=2.2e-09 Score=121.93 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=73.6
Q ss_pred CCCCCCCHHHHHHHHHc--CCCCC--------ccCC------CcceeEEEEEEEECCeEEEEEEEecCCcccccccchhh
Q psy3029 112 WFWLGVGKTSMVVRYIG--KMFSH--------HISP------TIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175 (617)
Q Consensus 112 ~G~~nVGKSSLinrl~~--~~~~~--------~~~~------t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~ 175 (617)
+|-...|||||..+|+. +.... .+.. ..|+++....+.+..+.+.++|+||||+.+|.......
T Consensus 8 iaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~ra 87 (638)
T 3j25_A 8 LAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRS 87 (638)
T ss_dssp ECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 33399999999999962 11100 0000 12334444444455566789999999999999999999
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCC
Q psy3029 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLE 224 (617)
Q Consensus 176 ~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~ 224 (617)
++-+|++|+|+|+...-.-+...-| ..+.+ .++|.|+++||+|..
T Consensus 88 L~~~DgavlVVDa~~GV~~qT~~v~-~~a~~---~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 88 LSVLDGAILLISAKDGVQAQTRILF-HALRK---MGIPTIFFINKIDQN 132 (638)
T ss_dssp HTTCSEEECCEESSCTTCSHHHHHH-HHHHH---HTCSCEECCEECCSS
T ss_pred HHHhCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCeEEEEeccccc
Confidence 9999999999999876433332223 33333 237889999999974
No 213
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.71 E-value=9.8e-08 Score=101.72 Aligned_cols=76 Identities=20% Similarity=0.144 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHcCCC-CCccCCCcceeEEEEEEEECCe---------------EEEEEEEecCCcccc-------ccc
Q psy3029 115 LGVGKTSMVVRYIGKMF-SHHISPTIGASFFTAKINVGEN---------------KVKLQVWDTAGQERF-------RSM 171 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~-~~~~~~t~g~~~~~~~i~~~~~---------------~~~l~i~Dt~G~e~~-------~~~ 171 (617)
+|||||||+|+|++... .....|....+...-.+.+.+. ...+.+||++|.... ...
T Consensus 29 pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~ 108 (392)
T 1ni3_A 29 PNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNA 108 (392)
T ss_dssp SSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHH
T ss_pred CCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHH
Confidence 99999999999998664 2233332222222223444431 136899999996432 223
Q ss_pred chhhhccCCEEEEEEeCCC
Q psy3029 172 APMYYRNANAALLVFDITQ 190 (617)
Q Consensus 172 ~~~~~~~ad~iIlV~Dis~ 190 (617)
...+++.+|++++|+|+.+
T Consensus 109 fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 109 FLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp HHHHHTTCSEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 3445679999999999864
No 214
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.69 E-value=1.3e-08 Score=98.20 Aligned_cols=104 Identities=7% Similarity=-0.104 Sum_probs=66.4
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHH---H-hcC-CCCCeEEEEEECC-CCCCccccCHHHHH
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKEL---K-RNV-DEPLVLCVVGNKT-DLESSREVNREEAF 235 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i---~-~~~-~~~iPvIlVgNK~-DL~~~~~v~~~e~~ 235 (617)
.+|++.++.+|+.||.++|++|||+|.+|.+-++ ..+-+..+ . ... ..++|++|.+||. |+.. ..+..++.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHH
Confidence 4588999999999999999999999999875433 22223222 2 211 2468999999995 6743 34444443
Q ss_pred HHHH----hcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 236 HYSK----SIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 236 ~~~~----~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
+... .....+..|||++|+|+.+-++||.+.+.
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 2221 12346899999999999999999987653
No 215
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.66 E-value=1.5e-08 Score=107.87 Aligned_cols=79 Identities=14% Similarity=0.038 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCe---------------EEEEEEEecCCcccccc-------cc
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGEN---------------KVKLQVWDTAGQERFRS-------MA 172 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~---------------~~~l~i~Dt~G~e~~~~-------~~ 172 (617)
+|||||||+|+|++..+.....|..+.+.....+.+.+. ...+.+|||+|..+... ..
T Consensus 31 pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~ 110 (396)
T 2ohf_A 31 PNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAF 110 (396)
T ss_dssp SSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHH
T ss_pred CCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHHHHHH
Confidence 999999999999987653332232222222233333332 23599999999876443 34
Q ss_pred hhhhccCCEEEEEEeCCChhh
Q psy3029 173 PMYYRNANAALLVFDITQYHS 193 (617)
Q Consensus 173 ~~~~~~ad~iIlV~Dis~~~S 193 (617)
..+++++|++++|+|+++..+
T Consensus 111 l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 111 LSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp HHHHHTSSSEEEEEEC-----
T ss_pred HHHHHhcCeEEEEEecCCCcc
Confidence 567889999999999986544
No 216
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.63 E-value=2.6e-07 Score=106.24 Aligned_cols=106 Identities=20% Similarity=0.188 Sum_probs=68.2
Q ss_pred CCCCHHHHHHHHHcC--------CCC--Ccc------CCCcceeEEEEEEEE--C-----CeEEEEEEEecCCccccccc
Q psy3029 115 LGVGKTSMVVRYIGK--------MFS--HHI------SPTIGASFFTAKINV--G-----ENKVKLQVWDTAGQERFRSM 171 (617)
Q Consensus 115 ~nVGKSSLinrl~~~--------~~~--~~~------~~t~g~~~~~~~i~~--~-----~~~~~l~i~Dt~G~e~~~~~ 171 (617)
...|||||..+|+.. +.. ..+ ....|+++....+.+ . .+.+.++|+||||+-+|...
T Consensus 22 vd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~~E 101 (709)
T 4fn5_A 22 VDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIE 101 (709)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCHHH
T ss_pred CCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccHHH
Confidence 999999999999621 100 001 112333333322322 1 23689999999999999998
Q ss_pred chhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCC
Q psy3029 172 APMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLE 224 (617)
Q Consensus 172 ~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~ 224 (617)
....++-+|++|+|+|+...-..+...-|-.. .+ .++|.++++||+|..
T Consensus 102 v~~aLr~~DgavlvVDaveGV~~qT~~v~~~a-~~---~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 102 VERSLRVLDGAVVVFCGTSGVEPQSETVWRQA-NK---YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HH---HTCCEEEEEECSSST
T ss_pred HHHHHHHhCeEEEEEECCCCCchhHHHHHHHH-HH---cCCCeEEEEcccccc
Confidence 99999999999999999876544333333332 22 247999999999974
No 217
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.61 E-value=3.3e-08 Score=103.97 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=61.8
Q ss_pred hhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcccc-CHHHHHHHHHhcCCeEEEEcCC
Q psy3029 174 MYYRNANAALLVFDITQYH-SFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREV-NREEAFHYSKSIGGTYYETSAL 251 (617)
Q Consensus 174 ~~~~~ad~iIlV~Dis~~~-S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v-~~~e~~~~~~~~g~~~~evSAk 251 (617)
..+.++|.+++|.+. .|. +...+++|+...... .+|++||+||+||.++... ..++....+...|++++.+||+
T Consensus 126 ~i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~ 201 (358)
T 2rcn_A 126 PIAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSH 201 (358)
T ss_dssp EEEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTT
T ss_pred HHHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecC
Confidence 347899999988775 454 566778887665442 3688999999999764321 1223445566789999999999
Q ss_pred CCCCHHHHHHH
Q psy3029 252 QDQGIEDVFLN 262 (617)
Q Consensus 252 tg~gI~eLf~~ 262 (617)
++.|+++|...
T Consensus 202 ~~~gl~~L~~~ 212 (358)
T 2rcn_A 202 TQDGLKPLEEA 212 (358)
T ss_dssp TTBTHHHHHHH
T ss_pred CCcCHHHHHHh
Confidence 99999887753
No 218
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.48 E-value=2.1e-07 Score=94.07 Aligned_cols=105 Identities=7% Similarity=-0.123 Sum_probs=71.1
Q ss_pred cCCcccccccchhhhccCCEEEEEEeCCChhhHH---HHHHHHHHHHhc-CCCCCeEEEEEEC-CCCCCccccCHHHHHH
Q psy3029 162 TAGQERFRSMAPMYYRNANAALLVFDITQYHSFA---AIKTWVKELKRN-VDEPLVLCVVGNK-TDLESSREVNREEAFH 236 (617)
Q Consensus 162 t~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~---~l~~~l~~i~~~-~~~~iPvIlVgNK-~DL~~~~~v~~~e~~~ 236 (617)
.+|++..+.+|+.|+.++|++|||+|.+|++-++ ++.+....+.+. ...++|++|.+|| .|+.. ..+..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence 4688999999999999999999999999986433 222221222221 1245799999997 58743 344444332
Q ss_pred HHH----hcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy3029 237 YSK----SIGGTYYETSALQDQGIEDVFLNVSKGLI 268 (617)
Q Consensus 237 ~~~----~~g~~~~evSAktg~gI~eLf~~I~~~l~ 268 (617)
... .....+..|||++|+|+.+-++||.+.+.
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 221 12346899999999999999999988763
No 219
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.40 E-value=7.7e-08 Score=94.34 Aligned_cols=59 Identities=24% Similarity=0.357 Sum_probs=41.7
Q ss_pred CCCCcceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 326 SRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 326 s~~~~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++.+.+|++++|.++|||||++.||+.+.|...|.||||.+|..+.+.+++..|+|+|-
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iw 67 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLW 67 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEE
Confidence 34566788888888999999999999999999999999999999999999999999985
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.25 E-value=1.6e-07 Score=99.64 Aligned_cols=139 Identities=14% Similarity=0.054 Sum_probs=80.4
Q ss_pred ccccCCCCCCCCHHHHHHHHHcC----CCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccccccc-------chhh
Q psy3029 107 CFEANWFWLGVGKTSMVVRYIGK----MFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSM-------APMY 175 (617)
Q Consensus 107 ~~~~i~G~~nVGKSSLinrl~~~----~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~-------~~~~ 175 (617)
..++++|.+|||||||+|+|++. .......+.+|.+.....+.+... +.++||||......+ ...+
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 45666677999999999999875 112233344555655555555443 789999997432211 1122
Q ss_pred h---ccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCC
Q psy3029 176 Y---RNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQ 252 (617)
Q Consensus 176 ~---~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAkt 252 (617)
+ +..+.++++++......+..+.. +.......+|+++|+||+|........ .....+.+.+|..+...++..
T Consensus 240 ~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~~-~~~~~~~~~~g~~l~p~~~~~ 314 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKLE-KADSLYANQLGELLSPPSKRY 314 (369)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEGG-GHHHHHHHHBTTTBCSSCGGG
T ss_pred HhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccHH-HHHHHHHHhcCCccCCCCchh
Confidence 2 57899999998732211111110 111123457999999999986543322 223345556666555555544
Q ss_pred C
Q psy3029 253 D 253 (617)
Q Consensus 253 g 253 (617)
.
T Consensus 315 ~ 315 (369)
T 3ec1_A 315 A 315 (369)
T ss_dssp T
T ss_pred h
Confidence 3
No 221
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.21 E-value=6e-08 Score=102.84 Aligned_cols=135 Identities=12% Similarity=0.067 Sum_probs=74.5
Q ss_pred ccccCCCCCCCCHHHHHHHHHcCC-----CCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcccccc----cchhh--
Q psy3029 107 CFEANWFWLGVGKTSMVVRYIGKM-----FSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRS----MAPMY-- 175 (617)
Q Consensus 107 ~~~~i~G~~nVGKSSLinrl~~~~-----~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~----~~~~~-- 175 (617)
..++++|.+|||||||+|+|++.. ......+.+|.+.....+.+... +.++||||...... +....
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 445566669999999999998752 12223455566655555554443 78999999743221 11111
Q ss_pred ----hccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEc
Q psy3029 176 ----YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETS 249 (617)
Q Consensus 176 ----~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evS 249 (617)
.+..+.++++++......+..+. .+.......+|+++|+||+|....... ......+.+.+|..+...+
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLA----RFDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSC
T ss_pred HhccccccCceEEEEcCCCEEEEcceE----EEEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCc
Confidence 24678888888863221111111 011112245799999999998654332 2223344455665544444
No 222
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.20 E-value=2.4e-06 Score=91.74 Aligned_cols=131 Identities=15% Similarity=0.163 Sum_probs=65.1
Q ss_pred CCCCHHHHHHHHHcCCCCCccC--CCcceeEEEEEEEECC--eEEEEEEEecCCcccc--------------cccchhhh
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHIS--PTIGASFFTAKINVGE--NKVKLQVWDTAGQERF--------------RSMAPMYY 176 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~--~t~g~~~~~~~i~~~~--~~~~l~i~Dt~G~e~~--------------~~~~~~~~ 176 (617)
+|+|||||+|.|++..+..... ...+.......+.+.. -...+.++|++|.... ...+..++
T Consensus 51 nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L 130 (427)
T 2qag_B 51 TGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYL 130 (427)
T ss_dssp TTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHH
Confidence 9999999999999865422111 1222222222222222 2236889999875321 01111111
Q ss_pred -------------cc--CC-EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCH--HHHHHHH
Q psy3029 177 -------------RN--AN-AALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNR--EEAFHYS 238 (617)
Q Consensus 177 -------------~~--ad-~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~--~e~~~~~ 238 (617)
.. +| +++|+.|...+.+..++ .++. ... ..+|+|+|.||+|.....++.. +.+....
T Consensus 131 ~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-eilk---~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L 205 (427)
T 2qag_B 131 QEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-VTMK---KLD-SKVNIIPIIAKADAISKSELTKFKIKITSEL 205 (427)
T ss_dssp HHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-HHHH---HTC-SCSEEEEEESCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-HHHH---HHh-hCCCEEEEEcchhccchHHHHHHHHHHHHHH
Confidence 11 22 46667776654333221 1222 222 4579999999999865433211 1122223
Q ss_pred HhcCCeEEEEcC
Q psy3029 239 KSIGGTYYETSA 250 (617)
Q Consensus 239 ~~~g~~~~evSA 250 (617)
...|++++.+|.
T Consensus 206 ~~~gi~I~~is~ 217 (427)
T 2qag_B 206 VSNGVQIYQFPT 217 (427)
T ss_dssp BTTBCCCCCCC-
T ss_pred HHcCCcEEecCC
Confidence 345778888875
No 223
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.17 E-value=7.5e-07 Score=97.84 Aligned_cols=102 Identities=18% Similarity=0.160 Sum_probs=62.0
Q ss_pred EEEEEEEecCCcccccc-cchh---h--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeE-EEEEECCCCCCc
Q psy3029 154 KVKLQVWDTAGQERFRS-MAPM---Y--YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVL-CVVGNKTDLESS 226 (617)
Q Consensus 154 ~~~l~i~Dt~G~e~~~~-~~~~---~--~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPv-IlVgNK~DL~~~ 226 (617)
.+.+.|+||+|...... +... + +..+|.+++|+|+........ ....+... +|+ +||+||+|....
T Consensus 183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~~----~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKDK----VDVASVIVTKLDGHAK 255 (504)
T ss_dssp TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHHH----HCCCCEEEECTTSCCC
T ss_pred CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHhh----cCceEEEEeCCccccc
Confidence 35789999999753221 1111 1 227899999999987543211 12223221 464 799999998643
Q ss_pred cccCHHHHHHHHHhcCCeE------------------EEEcCCCCCC-HHHHHHHHHHH
Q psy3029 227 REVNREEAFHYSKSIGGTY------------------YETSALQDQG-IEDVFLNVSKG 266 (617)
Q Consensus 227 ~~v~~~e~~~~~~~~g~~~------------------~evSAktg~g-I~eLf~~I~~~ 266 (617)
.. .+.......+.|+ +.+|+.+|.| +.+|++++.+.
T Consensus 256 ~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 256 GG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred hH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 22 1223333444443 3478999999 99999888654
No 224
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.07 E-value=1.1e-05 Score=86.46 Aligned_cols=148 Identities=13% Similarity=0.113 Sum_probs=76.4
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCc-ceeEEE-EEEEECCeEEEEEEEecCCcccccccchhh-----hccCCEEEEEEe
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTI-GASFFT-AKINVGENKVKLQVWDTAGQERFRSMAPMY-----YRNANAALLVFD 187 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~-g~~~~~-~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~-----~~~ad~iIlV~D 187 (617)
+|+|||||+|.+++-.....-.-++ |.+... ..+.-....-.+.+||++|..........+ +...+.+++ +|
T Consensus 78 nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS 156 (413)
T 1tq4_A 78 TGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-IS 156 (413)
T ss_dssp TTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EE
T ss_pred CCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eC
Confidence 9999999999999843221111111 111000 011111111147899999864322222233 234466555 77
Q ss_pred CCChhh-HHHHHHHHHHHHhcCCCCCeEEEEEECCCCC--Cc-----cccCHHH----HHHHH----HhcC---CeEEEE
Q psy3029 188 ITQYHS-FAAIKTWVKELKRNVDEPLVLCVVGNKTDLE--SS-----REVNREE----AFHYS----KSIG---GTYYET 248 (617)
Q Consensus 188 is~~~S-~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~--~~-----~~v~~~e----~~~~~----~~~g---~~~~ev 248 (617)
...... -..+..++. . .+.|+++|.||.|+. ++ .....++ +.+++ .+.| ..++.+
T Consensus 157 ~G~~~kqrv~la~aL~---~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iili 230 (413)
T 1tq4_A 157 ATRFKKNDIDIAKAIS---M---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLL 230 (413)
T ss_dssp SSCCCHHHHHHHHHHH---H---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEEC
T ss_pred CCCccHHHHHHHHHHH---h---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 652111 111222222 2 236999999999973 10 1112222 23332 1222 267889
Q ss_pred cC--CCCCCHHHHHHHHHHHHHH
Q psy3029 249 SA--LQDQGIEDVFLNVSKGLIC 269 (617)
Q Consensus 249 SA--ktg~gI~eLf~~I~~~l~~ 269 (617)
|+ ..+.|++++.+.|.+.+..
T Consensus 231 Ssh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 231 SNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp CTTCTTSTTHHHHHHHHHHHSCG
T ss_pred ecCcCCccCHHHHHHHHHHhCcc
Confidence 99 6777899999999877643
No 225
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.75 E-value=3.8e-05 Score=77.68 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=34.6
Q ss_pred cCCEEEEEEeCC-ChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCH--HHHHHHHHhcCCeEE
Q psy3029 178 NANAALLVFDIT-QYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNR--EEAFHYSKSIGGTYY 246 (617)
Q Consensus 178 ~ad~iIlV~Dis-~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~--~e~~~~~~~~g~~~~ 246 (617)
.+.++++++|.. .+-+-.+ .+.+..+.+ . +++|+|.+|+|.....+... +.+.+.....++.+|
T Consensus 111 Ral~~lllldep~~gL~~lD-~~~l~~L~~---~-~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l~~~~i~i~ 177 (270)
T 3sop_A 111 RVHCCLYFISPTGHSLRPLD-LEFMKHLSK---V-VNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGIEFY 177 (270)
T ss_dssp SCCEEEEEECCCSSSCCHHH-HHHHHHHHT---T-SEEEEEETTGGGSCHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred eeeeeeEEEecCCCcCCHHH-HHHHHHHHh---c-CcEEEEEeccccCCHHHHHHHHHHHHHHHHHcCcccc
Confidence 468888888854 2222222 223344433 3 79999999999865432211 222233444555554
No 226
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.71 E-value=2.7e-05 Score=79.30 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=36.1
Q ss_pred ccceEEEEEccCcccccccCCCCCCccccCCCCCCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEe
Q psy3029 82 SNKIKVGLLSDKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWD 161 (617)
Q Consensus 82 ~~~ikV~i~G~~~~~~~~~~~~~~~~~~~i~G~~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~D 161 (617)
...++|+++|. ||||||||+|+|++.. ...+.+.+|.+.....+.+.. .+.+||
T Consensus 118 ~~~~~v~~vG~----------------------~nvGKSsliN~l~~~~-~~~~~~~~g~T~~~~~~~~~~---~~~l~D 171 (282)
T 1puj_A 118 PRAIRALIIGI----------------------PNVGKSTLINRLAKKN-IAKTGDRPGITTSQQWVKVGK---ELELLD 171 (282)
T ss_dssp CCCEEEEEEES----------------------TTSSHHHHHHHHHTSC-CC------------CCEEETT---TEEEEE
T ss_pred CCCceEEEEec----------------------CCCchHHHHHHHhcCc-eeecCCCCCeeeeeEEEEeCC---CEEEEE
Confidence 34578999999 9999999999999876 334555666665444443432 478999
Q ss_pred cCCcc
Q psy3029 162 TAGQE 166 (617)
Q Consensus 162 t~G~e 166 (617)
|||..
T Consensus 172 tpG~~ 176 (282)
T 1puj_A 172 TPGIL 176 (282)
T ss_dssp CCCCC
T ss_pred CcCcC
Confidence 99974
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.58 E-value=2.1e-05 Score=79.16 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCccc
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQER 167 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e~ 167 (617)
+|||||||+|+|++... ..+.+++|.+.....+.+.. .+.+|||||...
T Consensus 108 ~~vGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 108 PNTGKSTIINKLKGKRA-SSVGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp TTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred CCCCHHHHHHHHhcccc-cccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 99999999999998764 34556666655443333332 578999999754
No 228
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.53 E-value=4.7e-05 Score=70.39 Aligned_cols=46 Identities=37% Similarity=0.567 Sum_probs=41.6
Q ss_pred cccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 339 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 339 ~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
.++|||+++++++.+.|...+.+|+|.++..+.+.+++..+.+++-
T Consensus 24 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~ 69 (179)
T 1z0f_A 24 MGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIW 69 (179)
T ss_dssp TTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEE
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEE
Confidence 3999999999999999998899999999999999999988877764
No 229
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.48 E-value=8.1e-05 Score=71.44 Aligned_cols=54 Identities=31% Similarity=0.405 Sum_probs=45.9
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.+|+|.+|..+.+.++++.+.|+|-
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~ 80 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEE
Confidence 344445555999999999999999999999999999999999999988887754
No 230
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.46 E-value=0.00019 Score=77.40 Aligned_cols=93 Identities=17% Similarity=0.160 Sum_probs=56.3
Q ss_pred EEEEEEecCCcccccc-cch-----hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccc
Q psy3029 155 VKLQVWDTAGQERFRS-MAP-----MYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSRE 228 (617)
Q Consensus 155 ~~l~i~Dt~G~e~~~~-~~~-----~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~ 228 (617)
+.+.|+||+|...... +.. .....+|.++||+|+......... ...+.... .+..||.||+|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~~---~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEAT---PIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHSC---TTEEEEEECCSSCSS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhhC---CCeEEEEECCCCccc--
Confidence 5688999999633221 111 112367999999998765432222 23333222 245689999997542
Q ss_pred cCHHHHHHHHHhcCCeEEEEcCCCCCCHHHH
Q psy3029 229 VNREEAFHYSKSIGGTYYETSALQDQGIEDV 259 (617)
Q Consensus 229 v~~~e~~~~~~~~g~~~~evSAktg~gI~eL 259 (617)
...+..+....+.|+.+++. |+++++|
T Consensus 255 --gG~~ls~~~~~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 255 --GGGALSAVAATGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp --HHHHHHHHHTTCCCEEEEEC--SSSTTCE
T ss_pred --ccHHHHHHHHHCCCEEEEEc--CCChHHh
Confidence 23345566678889888875 6666543
No 231
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.44 E-value=9.6e-05 Score=68.24 Aligned_cols=55 Identities=27% Similarity=0.379 Sum_probs=46.5
Q ss_pred cceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 330 NCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 330 ~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
.++++++|..++|||+++++++.+.|...+.+|++.++..+.+.++++.+.|++-
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 68 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEE
Confidence 3455555555999999999999999999999999999999999999987777653
No 232
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.43 E-value=5e-05 Score=70.34 Aligned_cols=56 Identities=25% Similarity=0.251 Sum_probs=46.6
Q ss_pred CcceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECC-EEEEEEee
Q psy3029 329 PNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE-NKVKLQLR 384 (617)
Q Consensus 329 ~~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~-~~v~LqI~ 384 (617)
+.++++++|..++|||++++++..+.|...+.||+|.+|..+.+.+++ ..++|++-
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 61 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEE
Confidence 345666666669999999999999999888899999999999999987 56666653
No 233
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.42 E-value=8e-05 Score=70.27 Aligned_cols=51 Identities=22% Similarity=0.395 Sum_probs=42.8
Q ss_pred eeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 333 EANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 333 ~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++|..++|||+++++++.+.|...+.||++.+| .+.+.++++.+.|+|-
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~ 74 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVM 74 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEE
Confidence 33334449999999999999999999999999988 6778899998888874
No 234
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.40 E-value=7.2e-05 Score=68.60 Aligned_cols=54 Identities=37% Similarity=0.476 Sum_probs=46.6
Q ss_pred cceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEe
Q psy3029 330 NCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383 (617)
Q Consensus 330 ~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI 383 (617)
.++++++|..++|||+++++++.+.+...+.||++.+|..+.+.++++.+.|+|
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i 59 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAI 59 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEE
Confidence 355566666699999999999999999889999999999899999998888775
No 235
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.39 E-value=8.4e-05 Score=69.29 Aligned_cols=54 Identities=28% Similarity=0.332 Sum_probs=30.3
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.||+|.+|..+.+.++++.+.|+|-
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~ 62 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62 (183)
T ss_dssp EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEE
Confidence 344455555999999999999999998899999999999999999988887764
No 236
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.39 E-value=8.3e-05 Score=71.10 Aligned_cols=54 Identities=30% Similarity=0.311 Sum_probs=36.4
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.||+|.+|..+.+.++++.++|+|-
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~ 83 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIW 83 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEE
Confidence 344444455999999999999999998899999999999999999988888764
No 237
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.38 E-value=0.00014 Score=69.00 Aligned_cols=54 Identities=28% Similarity=0.323 Sum_probs=47.4
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||++++++....+...+.||+|.+|..+.+.++++.+.+++-
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~ 83 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 83 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEE
Confidence 456666667999999999999999998999999999999999999999887654
No 238
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.38 E-value=8.7e-05 Score=70.60 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=47.4
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.+|++.++..+.+.++++.+.|+|-
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 87 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 87 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEE
Confidence 566666667999999999999999999999999999999999999988877754
No 239
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.37 E-value=0.00012 Score=67.87 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=44.2
Q ss_pred cceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 330 NCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 330 ~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
.++++++|..+||||+++++++.+.|.. +.||++..| .+.+.++++.++|+|-
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~ 59 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIR 59 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEE
Confidence 3555566666999999999999999987 789999766 7899999999888874
No 240
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.36 E-value=0.00011 Score=69.35 Aligned_cols=51 Identities=27% Similarity=0.380 Sum_probs=39.2
Q ss_pred eeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 334 ANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 334 ~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++|..++|||+++++++.+.|...+.+|+|.+|..+.+.++++.+.|+|-
T Consensus 25 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 75 (191)
T 2a5j_A 25 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIW 75 (191)
T ss_dssp EEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEE
T ss_pred EEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEE
Confidence 333334999999999999999998899999999999999999988888764
No 241
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.33 E-value=0.00014 Score=66.31 Aligned_cols=55 Identities=31% Similarity=0.517 Sum_probs=47.0
Q ss_pred cceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 330 NCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 330 ~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
.++++++|..++|||+++++++.+.+...+.||+|.++..+.+.+++..+.+++-
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIW 57 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEE
Confidence 3456666666999999999999999998899999999999999999987777764
No 242
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.33 E-value=0.00013 Score=67.33 Aligned_cols=54 Identities=28% Similarity=0.366 Sum_probs=42.5
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.||+|.++..+.+.++++.+.++|-
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 61 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 61 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEE
Confidence 445555555999999999999999998999999999999999999987777764
No 243
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.31 E-value=0.00015 Score=66.23 Aligned_cols=55 Identities=27% Similarity=0.398 Sum_probs=46.9
Q ss_pred cceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 330 NCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 330 ~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
.++++++|..++|||+++++++.+.+...+.+|+|.++..+.+.+++..+.+++-
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEE
Confidence 3555566666999999999999999999899999999999999999988877764
No 244
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.30 E-value=0.00013 Score=69.40 Aligned_cols=53 Identities=19% Similarity=0.119 Sum_probs=41.9
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++++|.++|||||+++++....+...+.||++.++..+.+.++++.++|+|-
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 77 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVY 77 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEE
Confidence 34444444999999999998666555567888999989999999999998863
No 245
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.30 E-value=8e-05 Score=80.37 Aligned_cols=91 Identities=19% Similarity=0.164 Sum_probs=53.1
Q ss_pred EEEEEEEecCCcccccc-cch---h--hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCC-e-EEEEEECCCCCC
Q psy3029 154 KVKLQVWDTAGQERFRS-MAP---M--YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPL-V-LCVVGNKTDLES 225 (617)
Q Consensus 154 ~~~l~i~Dt~G~e~~~~-~~~---~--~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~i-P-vIlVgNK~DL~~ 225 (617)
.+.+.|+||+|...... +.. . .+..+|.+++|+|...... .......+.. .+ | ..+|.||+|...
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKE----AVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHT----TSCSCEEEEEECSSSCS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHhh----cccCCeEEEEeCCCCcc
Confidence 35688999999754211 111 1 1226899999999866532 1122222221 23 4 789999999753
Q ss_pred ccccCHHHHHHHHHhcCCeEEEEcCCCCCCHH
Q psy3029 226 SREVNREEAFHYSKSIGGTYYETSALQDQGIE 257 (617)
Q Consensus 226 ~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~ 257 (617)
.. ..+..+....+.++..++ .|+.++
T Consensus 253 ~~----g~~l~~~~~~~~pi~~ig--~Ge~~~ 278 (432)
T 2v3c_C 253 KG----GGALSAVAETKAPIKFIG--IGEGID 278 (432)
T ss_dssp TT----HHHHHHHHHSSCCEEEEC--CSSSSS
T ss_pred ch----HHHHHHHHHHCCCEEEee--cCcccc
Confidence 21 224456667788877765 444443
No 246
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.27 E-value=0.00014 Score=68.82 Aligned_cols=46 Identities=30% Similarity=0.562 Sum_probs=34.3
Q ss_pred cccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 339 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 339 ~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
.++|||+++++++.+.|...+.+|+|.++..+.+.++++.+.|+|-
T Consensus 35 ~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~ 80 (192)
T 2il1_A 35 RGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIW 80 (192)
T ss_dssp TTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEE
Confidence 3999999999999999998899999999999999999988777764
No 247
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.26 E-value=0.00018 Score=65.56 Aligned_cols=54 Identities=31% Similarity=0.412 Sum_probs=45.8
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.+...+.||+|.++..+.+.+++..+.+++-
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~ 59 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLW 59 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEE
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEE
Confidence 344455555999999999999999999999999999999999999988877764
No 248
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=97.25 E-value=0.0017 Score=52.96 Aligned_cols=70 Identities=23% Similarity=0.337 Sum_probs=56.3
Q ss_pred HhhcCCEEEEEEeCCcEEEEEEeeecCC-ceEEEEeeeecCCCC----CCCCCCCcccceeeeecCceeEEEecc
Q psy3029 457 TLHIGDKVTVYTVHGKQFEGYLKTFSKQ-FELVISMTHQVDPEN----PQCIDPNTVVDMKIFKLDDIVRIEAKN 526 (617)
Q Consensus 457 ~~~iG~~v~v~~~~G~~y~Gi~~~~s~~-~~~~l~~~~~~~~~~----~~~~~~~~~~~~l~~~~~d~v~~~~~~ 526 (617)
+..||+.+.+..|++.+|||||++.+++ .-|+|+-+|---.+. ...+..+++-+.++|.+.||-++.+-+
T Consensus 9 ~~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~ 83 (88)
T 2vxe_A 9 LPELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVN 83 (88)
T ss_dssp SCCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECC
T ss_pred CcccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEec
Confidence 3468999999999999999999998865 679998888663222 234455778899999999999998754
No 249
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.25 E-value=0.00016 Score=68.09 Aligned_cols=52 Identities=27% Similarity=0.332 Sum_probs=42.3
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.|| +.+| .+.+.++++.+.|+|-
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~ 72 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIR 72 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEE
Confidence 44444444499999999999999999988888 4566 5899999999998865
No 250
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.25 E-value=0.00015 Score=78.09 Aligned_cols=92 Identities=16% Similarity=0.159 Sum_probs=55.7
Q ss_pred EEEEEEEecCCccc--cc-ccc---hhh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCC
Q psy3029 154 KVKLQVWDTAGQER--FR-SMA---PMY--YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLES 225 (617)
Q Consensus 154 ~~~l~i~Dt~G~e~--~~-~~~---~~~--~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~ 225 (617)
.+.+.|+||+|... .. .+. ... ....+.++||+|.........+ ...+.+.. .+..||+||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~~---~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQAS---PIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHHC---SSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhccc---CCcEEEEecccccc
Confidence 35677999999643 11 111 111 1256899999998765432222 23333222 25678999999753
Q ss_pred ccccCHHHHHHHHHhcCCeEEEEcCCCCCCHH
Q psy3029 226 SREVNREEAFHYSKSIGGTYYETSALQDQGIE 257 (617)
Q Consensus 226 ~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~ 257 (617)
. ...+..+....+.|+.+++. |++++
T Consensus 253 ~----~G~als~~~~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 253 K----GGGALSAVVATGATIKFIGT--GEKID 278 (433)
T ss_dssp C----HHHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred c----chHHHHHHHHHCCCEEEEEC--CCChH
Confidence 2 33455666778999988886 76664
No 251
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.25 E-value=0.0002 Score=67.38 Aligned_cols=53 Identities=25% Similarity=0.324 Sum_probs=44.7
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++++|..++|||+++++++.+.|...+.+|+|.+|..+.+.++++.++|+|-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~ 74 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 74 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEE
Confidence 33344444999999999999999999899999999999999999988877764
No 252
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.22 E-value=0.00016 Score=67.02 Aligned_cols=54 Identities=30% Similarity=0.489 Sum_probs=45.4
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.+...+.+|+|.+|..+.+.+++..++++|-
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 66 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIW 66 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEE
Confidence 344444445999999999999999999899999999999999999988777764
No 253
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.21 E-value=0.00024 Score=66.77 Aligned_cols=48 Identities=29% Similarity=0.437 Sum_probs=42.3
Q ss_pred eecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 337 FWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 337 g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
|..++|||+++++++.+.|...+.+|+|.+|..+.+.++++.+.++|-
T Consensus 29 G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~ 76 (189)
T 2gf9_A 29 GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIW 76 (189)
T ss_dssp CSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEE
Confidence 333999999999999999998899999999998999999988887764
No 254
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.20 E-value=0.00022 Score=67.89 Aligned_cols=54 Identities=28% Similarity=0.323 Sum_probs=44.4
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||++++++++..|...+.||+|.+|..+.+.++++.+.++|-
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~ 59 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 59 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEE
Confidence 455666666999999999999999998899999999999999999998888764
No 255
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=97.19 E-value=0.0014 Score=54.10 Aligned_cols=71 Identities=18% Similarity=0.270 Sum_probs=56.1
Q ss_pred hHhhcCCEEEEEEeCCcEEEEEEeeecCC-ceEEEEeeeecCCCC----CCCCCCCcccceeeeecCceeEEEecc
Q psy3029 456 ITLHIGDKVTVYTVHGKQFEGYLKTFSKQ-FELVISMTHQVDPEN----PQCIDPNTVVDMKIFKLDDIVRIEAKN 526 (617)
Q Consensus 456 ~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~-~~~~l~~~~~~~~~~----~~~~~~~~~~~~l~~~~~d~v~~~~~~ 526 (617)
.+..||+.+.+..|++.+|||||.+.+.+ .-|+|+-+|---.+. ...+..+++-+.++|.+.||-++.+-+
T Consensus 14 ~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e 89 (95)
T 2fb7_A 14 GTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCE 89 (95)
T ss_dssp --CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESC
T ss_pred cCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEec
Confidence 35689999999999999999999998864 679998877653222 224455788899999999999998865
No 256
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.19 E-value=0.00028 Score=64.50 Aligned_cols=55 Identities=31% Similarity=0.415 Sum_probs=46.5
Q ss_pred cceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 330 NCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 330 ~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
.++++++|..++|||+++++++.+.|...+.||+|.++..+.+.+++..+++++-
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIW 60 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEE
Confidence 3455566666999999999999999998899999999999999999987777653
No 257
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.18 E-value=0.00032 Score=65.38 Aligned_cols=54 Identities=33% Similarity=0.367 Sum_probs=45.9
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.+|++.+|..+.+.++++.+.|++-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 64 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEE
Confidence 445555555999999999999999999999999999999999999987777764
No 258
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.18 E-value=0.00025 Score=67.64 Aligned_cols=54 Identities=24% Similarity=0.342 Sum_probs=46.0
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.||+|.+|..+.+.+++..+.|+|-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~ 62 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 62 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEE
Confidence 344445555999999999999999999999999999999999999998887764
No 259
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.17 E-value=0.00025 Score=66.52 Aligned_cols=49 Identities=35% Similarity=0.523 Sum_probs=43.0
Q ss_pred eeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 336 WFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 336 ~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+|..++|||+++++++.+.|...+.+|+|.+|..+.+.+++..+.|+|-
T Consensus 21 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 69 (195)
T 1x3s_A 21 IGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 69 (195)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEE
T ss_pred ECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEE
Confidence 3333999999999999999999999999999999999999988887754
No 260
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.13 E-value=0.00035 Score=64.50 Aligned_cols=52 Identities=33% Similarity=0.406 Sum_probs=41.3
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEe
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI 383 (617)
+++++|..++|||+++++++.+.+...+.+|++.++..+.+.+++..+.|.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 62 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQI 62 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEE
Confidence 3444444499999999999999999999999999999999999998777764
No 261
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.13 E-value=0.00029 Score=66.29 Aligned_cols=52 Identities=35% Similarity=0.429 Sum_probs=43.8
Q ss_pred eeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 333 EANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 333 ~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++|..++|||+++++++.+.|...+.+|+|.+|..+.+.+++..+.|+|-
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 79 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 79 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEE
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEE
Confidence 3333344999999999999999998899999999999999999888877764
No 262
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.11 E-value=0.00022 Score=68.88 Aligned_cols=52 Identities=23% Similarity=0.217 Sum_probs=41.4
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++++|..+||||+++++++.+.|...+.||++.+| .+.+.+++..+.|+|-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~ 80 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLW 80 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEE
Confidence 333334449999999999999999999999999998 6788899988888864
No 263
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.10 E-value=0.00038 Score=66.06 Aligned_cols=54 Identities=28% Similarity=0.328 Sum_probs=45.5
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.+|+|.+|..+.+.+++..+.|+|-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~ 62 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIW 62 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEE
Confidence 344455555999999999999999998899999999999999999988777753
No 264
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.09 E-value=0.00039 Score=65.37 Aligned_cols=48 Identities=27% Similarity=0.462 Sum_probs=42.6
Q ss_pred eecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 337 FWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 337 g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
|..++|||+++++++.+.+...+.+|++.++..+.+.++++.+.++|-
T Consensus 23 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 70 (196)
T 3tkl_A 23 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70 (196)
T ss_dssp CSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEE
T ss_pred CcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEE
Confidence 333999999999999999999999999999999999999988777753
No 265
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.08 E-value=0.00021 Score=65.37 Aligned_cols=54 Identities=30% Similarity=0.391 Sum_probs=39.0
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.||++.+|..+.+.+++..+.|++-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 57 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIW 57 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEE
Confidence 345555555999999999999999988899999999999999999988877753
No 266
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.08 E-value=0.00032 Score=65.30 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=43.4
Q ss_pred eeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 333 EANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 333 ~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++|..++|||+++++++.+.|...+.+|++..+ .+.+.++++.+.|+|-
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~ 71 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVL 71 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEE
Confidence 33334449999999999999999999999999999 8899999999888763
No 267
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.07 E-value=0.00027 Score=67.01 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=39.8
Q ss_pred ceeeeeeecccccccceecccc--CcccCccCCccceeeEEEEEEECCEEEEEEeec
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIG--KMFSHHISPTIGASFFTAKINVGENKVKLQLRT 385 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~--~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~ 385 (617)
++++++|.++|||||++++|++ ..|...+ +++|.++..+.+.++++.+.|++..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~D 62 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLD 62 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEE
Confidence 4555555559999999999985 3455544 5689999899999999999887643
No 268
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.06 E-value=0.00025 Score=68.80 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=38.6
Q ss_pred eeeeeeecccccccceecccc--CcccCccCCccceeeEEEEEEECCEEEEEEeec
Q psy3029 332 FEANWFWLGVGKTSMVVRYIG--KMFSHHISPTIGASFFTAKINVGENKVKLQLRT 385 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~--~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~ 385 (617)
|++++|.++|||||++++|+. ..|...+ +|+|.+|..+.+.++++.++|++..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~D 93 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLD 93 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEee
Confidence 344444449999999999985 3455544 5689999899999999999887643
No 269
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.0003 Score=68.23 Aligned_cols=52 Identities=25% Similarity=0.362 Sum_probs=38.6
Q ss_pred eeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 333 EANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 333 ~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++|..++|||+++++++.+.|...+.||+|.+|..+.+.++++.+.|+|-
T Consensus 16 i~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 67 (223)
T 3cpj_B 16 IVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIW 67 (223)
T ss_dssp EEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEE
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEE
Confidence 3333444999999999999999998899999999999999999988887764
No 270
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.05 E-value=0.0003 Score=66.74 Aligned_cols=51 Identities=33% Similarity=0.301 Sum_probs=34.8
Q ss_pred eeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 333 EANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 333 ~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++|..++|||+++++++.+.|...+.||++..| .+.+.++++.+.|+|-
T Consensus 23 i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~ 73 (201)
T 2q3h_A 23 CVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLC 73 (201)
T ss_dssp EEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEE
Confidence 33334449999999999999999999999998777 6788999998887764
No 271
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.05 E-value=0.00047 Score=63.74 Aligned_cols=53 Identities=32% Similarity=0.332 Sum_probs=43.1
Q ss_pred eeeeeeecccccccceeccccCccc-CccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~-~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++++|..++|||+++++++.+.|. ..+.||++.+|..+.+.+++..+.|++-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 65 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 65 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEE
Confidence 3444444499999999999988885 5778999999988888999988887753
No 272
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.04 E-value=0.00025 Score=67.33 Aligned_cols=48 Identities=31% Similarity=0.395 Sum_probs=33.1
Q ss_pred eecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 337 FWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 337 g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
|..++|||+++++++.+.|...+.+|+|.+|..+.+.+++..+.|+|-
T Consensus 35 G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~ 82 (199)
T 2p5s_A 35 GDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLW 82 (199)
T ss_dssp SSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEE
T ss_pred CcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEE
Confidence 333999999999999999988899999999999999999988887764
No 273
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.04 E-value=0.0004 Score=65.48 Aligned_cols=53 Identities=17% Similarity=0.112 Sum_probs=43.1
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.||++.+| .+.+.++++.+.|+|-
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~ 76 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLW 76 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeee-EEEEEECCEEEEEEEE
Confidence 3344444449999999999999999999999999988 5678899998877754
No 274
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.03 E-value=0.00033 Score=65.58 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=44.1
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||++++++..+.|...+.||++..| .+.+.+++..+.|+|-
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~ 60 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLW 60 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEE
Confidence 4555555669999999999999999999999999888 6788888888777764
No 275
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.03 E-value=0.00036 Score=66.40 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=41.9
Q ss_pred eeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 333 EANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 333 ~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++|..++|||++++++..+.|...+.||++.+|. +.+.++++.+.|+|-
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~ 78 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALW 78 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEE
Confidence 333444499999999999999999999999999985 568899988887764
No 276
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.03 E-value=0.00047 Score=63.96 Aligned_cols=53 Identities=30% Similarity=0.394 Sum_probs=44.9
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
.+++++|..++|||+++++++.+.|...+.||++..+ .+.+.++++.+.|+|-
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~ 59 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLV 59 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEE
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEE
Confidence 3444555559999999999999999999999999999 8899999998887764
No 277
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.02 E-value=0.00034 Score=66.59 Aligned_cols=52 Identities=31% Similarity=0.409 Sum_probs=33.0
Q ss_pred eeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 333 EANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 333 ~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++|..++|||+++++++.+.|...+.+|+|.+|..+.+.+++..+.|+|-
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~ 79 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIW 79 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEE
T ss_pred EEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEE
Confidence 3334444999999999999999999999999999999999999988877764
No 278
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.00 E-value=0.00035 Score=66.36 Aligned_cols=54 Identities=35% Similarity=0.451 Sum_probs=45.3
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
.+++++|..++|||+++++++.+.|...+.+|+|.++..+.+.+++..+.|+|-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~ 62 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 62 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEE
Confidence 344455555999999999999999999999999999999999999887777653
No 279
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.00 E-value=0.00046 Score=65.87 Aligned_cols=48 Identities=35% Similarity=0.538 Sum_probs=42.1
Q ss_pred eecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 337 FWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 337 g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
|..++|||+++++++.+.|...+.||++.+|..+.+.+++..+.|+|-
T Consensus 27 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 74 (213)
T 3cph_A 27 GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLW 74 (213)
T ss_dssp CSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEE
Confidence 333999999999999999988899999999999999999987777754
No 280
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.99 E-value=0.00054 Score=63.23 Aligned_cols=52 Identities=23% Similarity=0.273 Sum_probs=43.1
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++++|..++|||+++++++.+.|...+.+|++.+|. +.+.+++..+.|+|-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~ 62 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDIL 62 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEE
Confidence 3444444499999999999999999999999999985 888999988877754
No 281
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.98 E-value=0.00027 Score=67.88 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=43.8
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||++++++..+.|...+.||++.+| .+.+.++++.+.|+|-
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~ 81 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLW 81 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEE
Confidence 4445555559999999999999999999999999988 6788888888777764
No 282
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.97 E-value=0.00021 Score=67.01 Aligned_cols=53 Identities=17% Similarity=0.078 Sum_probs=30.0
Q ss_pred ceeeeeeecccccccceeccccC--cccCccCCccceeeEEEEEEE---CCEEEEEEe
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGK--MFSHHISPTIGASFFTAKINV---GENKVKLQL 383 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~--~f~~~~~pTIg~df~~k~v~~---d~~~v~LqI 383 (617)
+|++++|.++|||||+++++... .|...+.||+|.+|..+.+.+ +++.+.|+|
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i 60 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNV 60 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEE
Confidence 45666666699999999999974 677788999999998777665 334455554
No 283
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.97 E-value=0.00042 Score=65.08 Aligned_cols=49 Identities=31% Similarity=0.362 Sum_probs=40.3
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEE
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKV 379 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v 379 (617)
++++++|..++|||+++++++.+.|...+.+|+|.+|..+.+.+++..+
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 56 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINI 56 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC---
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccc
Confidence 4555566669999999999999999999999999999999888887653
No 284
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.96 E-value=0.00031 Score=66.26 Aligned_cols=53 Identities=40% Similarity=0.559 Sum_probs=43.8
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEe
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI 383 (617)
++++++|..++|||+++++++.+.|...+.||+|.+|..+.+.+++..++++|
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 76 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLI 76 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEE
Confidence 33444444499999999999999998889999999999999999887777765
No 285
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.95 E-value=0.00027 Score=67.03 Aligned_cols=53 Identities=23% Similarity=0.228 Sum_probs=14.5
Q ss_pred eeeeeeecccccccceeccccC--cccCccCCccceeeEEEEEEECCE--EEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGK--MFSHHISPTIGASFFTAKINVGEN--KVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~--~f~~~~~pTIg~df~~k~v~~d~~--~v~LqI~ 384 (617)
+++++|..++|||+++++++.+ .|...+.+|+|.++..+.+.++++ .+.|+|-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~ 78 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLL 78 (208)
T ss_dssp EEEEC----------------------------------CEEEECTTSSEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEE
Confidence 3334444499999999999998 888889999999999999999987 6666654
No 286
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.94 E-value=0.00044 Score=66.80 Aligned_cols=54 Identities=19% Similarity=0.163 Sum_probs=45.5
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.+|+|.++..+.+.+++..+.++|-
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 69 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 69 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEE
Confidence 344444444999999999999999999999999999999999999988888763
No 287
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.92 E-value=0.00043 Score=66.29 Aligned_cols=53 Identities=28% Similarity=0.285 Sum_probs=44.2
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.||++..| .+.+.++++.+.|+|-
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~ 62 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLW 62 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEE
Confidence 4455555559999999999999999999999999887 6788889988888764
No 288
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.91 E-value=0.00045 Score=62.87 Aligned_cols=53 Identities=23% Similarity=0.353 Sum_probs=43.7
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.+...+.||++..+ .+.+.+++..+.|++-
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~ 56 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEIL 56 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEE
Confidence 4555566669999999999999999999999999887 5778888887777754
No 289
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.90 E-value=0.00071 Score=63.95 Aligned_cols=53 Identities=25% Similarity=0.456 Sum_probs=43.8
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.||++..+ .+.+.+++..++|++-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~ 81 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEIL 81 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEE
Confidence 3444444559999999999999999999999999888 6788999988888863
No 290
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.90 E-value=0.00072 Score=61.24 Aligned_cols=53 Identities=23% Similarity=0.306 Sum_probs=43.9
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.+|++..+ .+.+.+++..+.+++-
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 56 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEIL 56 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEE
Confidence 4555666669999999999999999998999998766 7889999988777654
No 291
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.87 E-value=0.0007 Score=62.82 Aligned_cols=53 Identities=25% Similarity=0.246 Sum_probs=44.0
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.+|++..+ .+.+.+++..+.|++-
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~ 58 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLW 58 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEE
Confidence 4455555559999999999999999999999998877 6788999999888764
No 292
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.85 E-value=0.00044 Score=66.44 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=38.2
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCE
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGEN 377 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~ 377 (617)
+++++|..++|||+++++++.+.|...+.+|++.+|..+.+.+++.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~ 72 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQ 72 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCc
Confidence 3444444499999999999999998889999999998889988876
No 293
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.84 E-value=0.00065 Score=63.35 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=37.7
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeE-EEEEEECCE
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFF-TAKINVGEN 377 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~-~k~v~~d~~ 377 (617)
+++++|..++|||+++++++.+.|...+.||+|.+|. .+.+.+++.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 59 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANG 59 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCC
Confidence 3344444499999999999999998889999999998 677777765
No 294
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.83 E-value=0.00073 Score=65.06 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=36.3
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++++|..++|||+++++++.+.|...+.||++..| .+.+.++++.++|+|-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~ 87 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIW 87 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEE
Confidence 344444449999999999999999988999998877 6788999998888764
No 295
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.83 E-value=0.00052 Score=64.60 Aligned_cols=52 Identities=23% Similarity=0.262 Sum_probs=42.6
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++++|..++|||+++++++.+.|...+.||++..| .+.+.++++.+.|+|-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~ 71 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLY 71 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEE
Confidence 333444449999999999999999999999999888 6788889888887764
No 296
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.80 E-value=0.00076 Score=61.89 Aligned_cols=53 Identities=21% Similarity=0.199 Sum_probs=39.1
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.+...+ +|+|.++..+.+.+++..+.|++-
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 57 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVV 57 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEE
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEE
Confidence 44555555599999999999988886654 578889888999999998887764
No 297
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.77 E-value=0.0003 Score=66.28 Aligned_cols=53 Identities=30% Similarity=0.334 Sum_probs=43.8
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++++|..++|||+++++++.+.|...+.+|+|.++..+.+.++++.+.++|-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 77 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIW 77 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEE
Confidence 33344444999999999999999999999999999999999998877776654
No 298
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.76 E-value=0.001 Score=61.69 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=42.4
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.+|++..+ .+.+.++++.+.|+|-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~ 71 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDIL 71 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEE
Confidence 3344444449999999999999999999999999888 6778899987777654
No 299
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.76 E-value=0.001 Score=60.20 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=43.2
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.+|++..+ .+.+.++++.+.+++-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~ 57 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDIL 57 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEE
Confidence 4455555559999999999999999988999999888 5778899987777653
No 300
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.75 E-value=0.0014 Score=73.20 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHcCCCCCccCC-CcceeEEEEEE--EE-CCeEEEEEEEecCCccc
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISP-TIGASFFTAKI--NV-GENKVKLQVWDTAGQER 167 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~-t~g~~~~~~~i--~~-~~~~~~l~i~Dt~G~e~ 167 (617)
||||||||+|+|++....-.+.. +.+.+...+.+ .+ ......+.++||+|...
T Consensus 47 pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 47 YRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp TTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 99999999999998763212211 11222222211 11 12234688999999753
No 301
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.74 E-value=0.00041 Score=64.10 Aligned_cols=53 Identities=32% Similarity=0.458 Sum_probs=40.3
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEEC-CEEEEEEe
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVG-ENKVKLQL 383 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d-~~~v~LqI 383 (617)
++++++|..++|||+++++++.+.|...+.||+|.++..+.+.++ ++.+.++|
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 62 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 62 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEE
Confidence 445555555999999999999999999999999999999988887 55556554
No 302
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.74 E-value=0.00081 Score=61.41 Aligned_cols=54 Identities=19% Similarity=0.099 Sum_probs=35.6
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++...+...+.++.+.++..+.+.++++.+.|++-
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 56 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVY 56 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEE
Confidence 355566666999999999999888887777888899999999999999988864
No 303
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.71 E-value=0.0013 Score=59.88 Aligned_cols=53 Identities=26% Similarity=0.392 Sum_probs=42.8
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.||++..+ .+.+..++..+.+++-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~ 56 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQIT 56 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEE
Confidence 4455555559999999999999999888999999887 5677888887777654
No 304
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=96.69 E-value=0.008 Score=48.18 Aligned_cols=71 Identities=13% Similarity=0.061 Sum_probs=56.1
Q ss_pred hHhHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEecc
Q psy3029 451 RFMQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAKN 526 (617)
Q Consensus 451 r~~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~~ 526 (617)
.-+-++..++|++|.|.+|+|..|+|.+.++..-+-++|+=|....... . ..-...++|.+..|.-|.++|
T Consensus 5 ~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~----~-~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG----R-VAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp CHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTS----C-EEEEEEEEECGGGEEEEEECC
T ss_pred CHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCC----c-EEEcCeEEEeCCEEEEEEcCC
Confidence 3466889999999999999999999999999999999999888764211 1 112246788888888887754
No 305
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.68 E-value=0.0015 Score=61.39 Aligned_cols=53 Identities=26% Similarity=0.385 Sum_probs=42.8
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.||++..+ .+.+.+++..+.|+|-
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~ 61 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQIT 61 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEE
Confidence 4455555559999999999999999988999999877 5677888887777764
No 306
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.67 E-value=0.0013 Score=62.15 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=42.0
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++++|..++|||+++++++.+.|...+.+|++..+ .+.+.+++..+.++|-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~ 67 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDIL 67 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEE
Confidence 333444449999999999999999999999999887 6788899987777653
No 307
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.67 E-value=0.00071 Score=64.28 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=38.9
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++++|..++|||+++++++.+.|...+.+|++..+ .+.+.+++..+.|+|-
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~ 77 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLV 77 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEE
Confidence 344444449999999999999999999999999998 7788888877766653
No 308
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.67 E-value=0.0013 Score=61.30 Aligned_cols=60 Identities=15% Similarity=0.026 Sum_probs=46.8
Q ss_pred CCCcceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecC
Q psy3029 327 RVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTG 386 (617)
Q Consensus 327 ~~~~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~ 386 (617)
+.+..+++++|..++||||++++++...+...+.|+++.++....+.+++..+.|--++|
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G 63 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 63 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCC
Confidence 344566677777799999999999987776667788888888888999887666655555
No 309
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.64 E-value=0.0011 Score=63.34 Aligned_cols=53 Identities=23% Similarity=0.208 Sum_probs=36.2
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.|...+.||++.++. ..+.++++.+.|+|-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~ 78 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALW 78 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEE
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEE
Confidence 34444455599999999999999999989999999884 558889988777754
No 310
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.62 E-value=0.0016 Score=58.71 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=43.7
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEe
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI 383 (617)
++++++|..++|||+++++++.+.+...+.+|++..+ .+.+.+++..+.+++
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 55 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDI 55 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEE
Confidence 4566666669999999999999999888899998776 778889998887776
No 311
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.54 E-value=0.0012 Score=62.90 Aligned_cols=52 Identities=25% Similarity=0.261 Sum_probs=40.6
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEe
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI 383 (617)
++++++|..++|||+++++++.+.|...+.+|++..+ .+.+.++++.+.|+|
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i 82 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGL 82 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEE
T ss_pred EEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEE
Confidence 4445555559999999999999999999999997655 788889998888665
No 312
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.54 E-value=0.0026 Score=65.96 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=54.5
Q ss_pred EEEEEecCCccccccc-chhh-----hccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcccc
Q psy3029 156 KLQVWDTAGQERFRSM-APMY-----YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREV 229 (617)
Q Consensus 156 ~l~i~Dt~G~e~~~~~-~~~~-----~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v 229 (617)
.+.++|++|....... .... .-..|-.+++.|..... ++...+..+.+... .-+|+.||.|....
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~~---it~iilTKlD~~a~--- 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAVK---IDGIILTKLDADAR--- 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHSC---CCEEEEECGGGCSC---
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhcC---CCEEEEeCcCCccc---
Confidence 4567999997433221 1110 11478899999976543 33333344443222 23688999996321
Q ss_pred CHHHHHHHHHhcCCeEEEEcCCCCCCHHHH
Q psy3029 230 NREEAFHYSKSIGGTYYETSALQDQGIEDV 259 (617)
Q Consensus 230 ~~~e~~~~~~~~g~~~~evSAktg~gI~eL 259 (617)
.-.+..+....+.++..++ +|++++++
T Consensus 284 -~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 284 -GGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp -CHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred -hhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 2335567777889988887 77777554
No 313
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.54 E-value=0.0016 Score=60.46 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=42.9
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++.+.+...+.+|++..+ .+.+.+++..+.|+|-
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~ 57 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDIL 57 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE-EEEEEETTEEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE-EEEEEECCcEEEEEEE
Confidence 4445555559999999999999999999989996655 6888999998888763
No 314
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.54 E-value=0.0014 Score=60.08 Aligned_cols=56 Identities=16% Similarity=0.013 Sum_probs=39.0
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTG 386 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~ 386 (617)
++++++|.+++||||+++++.+..+...+.|+++.++....+.+++..+.+--++|
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G 59 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 59 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCC
Confidence 45566666699999999999987776666788888888888888886655554444
No 315
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.51 E-value=0.0027 Score=64.85 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=57.7
Q ss_pred EEEEEEEecCCccc--cc-ccch-----hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCe-EEEEEECCCCC
Q psy3029 154 KVKLQVWDTAGQER--FR-SMAP-----MYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLV-LCVVGNKTDLE 224 (617)
Q Consensus 154 ~~~l~i~Dt~G~e~--~~-~~~~-----~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iP-vIlVgNK~DL~ 224 (617)
.+.+.|+||+|... .. .+.. .....+|.+++|+|...... ..+.+..+.. .++ ..+|.||+|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence 35688999999765 22 1221 12447899999999865322 1222233332 134 67899999964
Q ss_pred CccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHH
Q psy3029 225 SSREVNREEAFHYSKSIGGTYYETSALQDQGIEDV 259 (617)
Q Consensus 225 ~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eL 259 (617)
.. ...+..+....+.++..++ +|++++++
T Consensus 253 ~~----~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 253 AK----GGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp TT----HHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred cc----hHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 32 2345567778888888876 57777554
No 316
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.50 E-value=0.0018 Score=60.52 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=41.9
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+++++|..++|||+++++++.+.+...+.+|++..+ .+.+.+++..+.++|-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~ 74 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDIL 74 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEE
Confidence 344444449999999999999999888889998877 6788999988777753
No 317
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.48 E-value=0.0017 Score=60.89 Aligned_cols=54 Identities=22% Similarity=0.185 Sum_probs=40.0
Q ss_pred ceeeeeeecccccccceeccccCc-ccCccCCccceeeEEEEEEECCEEEEEEeecC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKM-FSHHISPTIGASFFTAKINVGENKVKLQLRTG 386 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~-f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~ 386 (617)
++++++|..++|||+++++++.+. |...+.+|+| +..+.+.+++..+.|--++|
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~Dt~G 76 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSSLSFTVFDMSG 76 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSSCEEEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECCEEEEEEECCC
Confidence 334444444999999999999887 6778889998 44677888886666665555
No 318
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.45 E-value=0.002 Score=60.56 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=34.6
Q ss_pred ecccccccceeccccCcccC-ccCCccceeeEEEEEEECCEEEEEEeecCC
Q psy3029 338 WLGVGKTSMVVRYIGKMFSH-HISPTIGASFFTAKINVGENKVKLQLRTGL 387 (617)
Q Consensus 338 ~~~vGKssi~~~~~~~~f~~-~~~pTIg~df~~k~v~~d~~~v~LqI~~~~ 387 (617)
..++|||+++++++.+.|.. .|.||+|.. .+.+..++..+.|--++|.
T Consensus 25 ~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~ 73 (199)
T 4bas_A 25 LDNSGKTTIINQVKPAQSSSKHITATVGYN--VETFEKGRVAFTVFDMGGA 73 (199)
T ss_dssp CTTSCHHHHHHHHSCCC----CCCCCSSEE--EEEEEETTEEEEEEEECCS
T ss_pred CCCCCHHHHHHHHhcCCCccccccccccee--EEEEEeCCEEEEEEECCCC
Confidence 33999999999999999988 889999944 4556666666666656664
No 319
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.45 E-value=0.0011 Score=61.00 Aligned_cols=56 Identities=13% Similarity=0.075 Sum_probs=45.0
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTG 386 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~ 386 (617)
.+++++|..++|||+++++++.+.|...+.++++.++..+.+.+++..+.|--++|
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 64 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPG 64 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCC
Confidence 44555555599999999999999999888899999998888999998776544444
No 320
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=96.41 E-value=0.012 Score=48.01 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=47.3
Q ss_pred HhHhhcCCEEEEEEeCCcEEEEEEeeec-CCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEecc
Q psy3029 455 AITLHIGDKVTVYTVHGKQFEGYLKTFS-KQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAKN 526 (617)
Q Consensus 455 ~~~~~iG~~v~v~~~~G~~y~Gi~~~~s-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~~ 526 (617)
-+.++||++|.|++.||..|+|++.|+. ..+.|+|.=| . . +.-....+|.+.-|..|.+.+
T Consensus 11 el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~-~--~--------~~~~~~~iI~G~aI~eI~v~~ 72 (86)
T 1y96_A 11 EWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF-L--E--------DGSMSVTGIMGHAVQTVETMN 72 (86)
T ss_dssp HHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE-C--T--------TSCEEEEEECGGGEEEEEEEE
T ss_pred HHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec-c--c--------CCeEEEEEEecceEEEEEEec
Confidence 4688999999999999999999999999 5689998755 1 1 122235577888888877755
No 321
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.37 E-value=0.0021 Score=60.20 Aligned_cols=49 Identities=29% Similarity=0.278 Sum_probs=38.3
Q ss_pred eeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecC
Q psy3029 336 WFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTG 386 (617)
Q Consensus 336 ~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~ 386 (617)
+|..++|||+++++++.+.|...+.||+|.++. .+..++..+.|--++|
T Consensus 28 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~Dt~G 76 (188)
T 1zd9_A 28 VGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGNVTIKLWDIGG 76 (188)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETTEEEEEEEECC
T ss_pred ECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCCEEEEEEECCC
Confidence 333399999999999999998888999999884 4666666666655555
No 322
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.35 E-value=0.0048 Score=69.44 Aligned_cols=23 Identities=22% Similarity=-0.032 Sum_probs=18.2
Q ss_pred cccCCCCCCCCHHHHHHHHHcCC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGKM 130 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~~ 130 (617)
+++|+|++|+|||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 35555559999999999998853
No 323
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.35 E-value=0.00037 Score=64.55 Aligned_cols=53 Identities=26% Similarity=0.296 Sum_probs=27.1
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||++++++..+.|...+.||++..| .+.+.++++.+.|+|-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~ 61 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLW 61 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEE
Confidence 4455555559999999999999999999999999877 4556777777776653
No 324
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=96.30 E-value=0.011 Score=47.44 Aligned_cols=69 Identities=16% Similarity=0.283 Sum_probs=54.7
Q ss_pred hHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEecc
Q psy3029 453 MQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAKN 526 (617)
Q Consensus 453 ~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~~ 526 (617)
+-++..++|++|.|.++||..|.|+|.++..-+-++|+=|....... ...-...++|.+..|+.|...|
T Consensus 6 ~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~-----~~~~lg~v~iRG~~I~~i~~~d 74 (77)
T 1i4k_A 6 LDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGE-----VVRKVGSVVIRGDTVVFVSPAP 74 (77)
T ss_dssp HHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTE-----EEEEEEEEEECGGGEEEEEECC
T ss_pred HHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCC-----cEeECCEEEECCCEEEEEEeCC
Confidence 45788899999999999999999999999999999999988764321 1112246788999988887754
No 325
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=96.22 E-value=0.019 Score=50.72 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=57.3
Q ss_pred hHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEecc
Q psy3029 453 MQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAKN 526 (617)
Q Consensus 453 ~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~~ 526 (617)
+-+|..++|++|+|.+|||..|.|+|.++..-+-++|+=+....... . ..-.+.++|-...|.-|.+.|
T Consensus 7 ~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g----~-~~~l~~v~IRGnnI~~I~lpd 75 (126)
T 2y9a_D 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG----R-VAQLEQVYIRGSKIRFLILPD 75 (126)
T ss_dssp HHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTS----C-CEEEEEEEECGGGEEEEECCS
T ss_pred HHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCC----c-EeecccEEEeCCEEEEEEccc
Confidence 56889999999999999999999999999999999999888764211 1 123357899999999999877
No 326
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=96.20 E-value=0.019 Score=46.57 Aligned_cols=71 Identities=14% Similarity=0.316 Sum_probs=55.9
Q ss_pred hHhHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEecc
Q psy3029 451 RFMQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAKN 526 (617)
Q Consensus 451 r~~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~~ 526 (617)
.-+-++..++|++|.|.++||..|.|+|.++..-+-++|+=|.....+. ...-...++|.+..|+-|...|
T Consensus 9 ~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~-----~~~~lg~v~iRG~~I~~i~~~~ 79 (81)
T 1th7_A 9 TAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDG-----SGKKLGTIVIRGDNVILISPLQ 79 (81)
T ss_dssp HHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSS-----CEEEEEEEEECGGGEEEEEEC-
T ss_pred chHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCC-----ceeECCEEEECCCEEEEEEecC
Confidence 4456888999999999999999999999999999999999988764321 1112346788999988887654
No 327
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.19 E-value=0.00054 Score=64.18 Aligned_cols=53 Identities=19% Similarity=0.073 Sum_probs=39.7
Q ss_pred ceeeeeeecccccccceeccccCcccCc-----------cCCccceeeEEEEE-EECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHH-----------ISPTIGASFFTAKI-NVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~-----------~~pTIg~df~~k~v-~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++ +++.+.|... +.||+|.+|..+.+ .++++.++|+|-
T Consensus 15 ~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~ 79 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLY 79 (198)
T ss_dssp EEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEE
T ss_pred cEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEE
Confidence 44444455599999999 6777777666 45799999988777 778888888764
No 328
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=96.18 E-value=0.014 Score=46.58 Aligned_cols=70 Identities=14% Similarity=0.255 Sum_probs=54.2
Q ss_pred HhHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEecc
Q psy3029 452 FMQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAKN 526 (617)
Q Consensus 452 ~~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~~ 526 (617)
-+-++..++|++|.|.++||..|.|+|.++..-+-++|+=|...... ....-...++|.+..|+.|...|
T Consensus 5 P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-----~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 1h64_1 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG-----EVVKRYGKIVIRGDNVLAISPTE 74 (75)
T ss_dssp HHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETT-----EEEEEEEEEEECGGGEEEEEEC-
T ss_pred HHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeC-----CceeECCEEEECCCEEEEEEeCC
Confidence 35678899999999999999999999999999999999988876431 01112246788888888877643
No 329
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=96.17 E-value=0.00035 Score=69.75 Aligned_cols=56 Identities=14% Similarity=0.182 Sum_probs=40.6
Q ss_pred cceeeeeeec---------ccccccceecccc---CcccCccCCcc-ceeeEEEEEE--------------ECCEEEEEE
Q psy3029 330 NCFEANWFWL---------GVGKTSMVVRYIG---KMFSHHISPTI-GASFFTAKIN--------------VGENKVKLQ 382 (617)
Q Consensus 330 ~~~~~~~g~~---------~vGKssi~~~~~~---~~f~~~~~pTI-g~df~~k~v~--------------~d~~~v~Lq 382 (617)
.+|++++|.. +|||||++++++. +.|...+.||+ +.+|..+.+. ++++.++|+
T Consensus 19 ~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 98 (255)
T 3c5h_A 19 TYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMH 98 (255)
T ss_dssp CEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEE
T ss_pred eeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEE
Confidence 4667777777 9999999999998 67888888887 8888766554 577888888
Q ss_pred eec
Q psy3029 383 LRT 385 (617)
Q Consensus 383 I~~ 385 (617)
|--
T Consensus 99 i~D 101 (255)
T 3c5h_A 99 IVE 101 (255)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 330
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=96.08 E-value=0.026 Score=49.44 Aligned_cols=71 Identities=8% Similarity=0.097 Sum_probs=58.0
Q ss_pred HhHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEeccc
Q psy3029 452 FMQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAKNV 527 (617)
Q Consensus 452 ~~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~~v 527 (617)
++-+|..++|++|.|.++||..|.|+|.++..-+-++|+=|....... . ..-...++|....|+.|...|-
T Consensus 3 p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~----~-~~~lg~v~IRG~nI~~I~~pd~ 73 (119)
T 1b34_A 3 LVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNR----E-PVQLETLSIRGNNIRYFILPDS 73 (119)
T ss_dssp HHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTS----C-CEEEEEEEECGGGEEEEECCTT
T ss_pred hHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCC----c-eeEcceEEEcCCeEEEEEeccc
Confidence 456889999999999999999999999999999999999988764211 1 1233578899999999998773
No 331
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.04 E-value=0.001 Score=63.23 Aligned_cols=46 Identities=28% Similarity=0.382 Sum_probs=38.7
Q ss_pred eecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEe
Q psy3029 337 FWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383 (617)
Q Consensus 337 g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI 383 (617)
|..++|||+++++++.+.|...+.+|++..+ .+.+.+++..+.|+|
T Consensus 37 G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i 82 (204)
T 3th5_A 37 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGL 82 (204)
Confidence 3339999999999999999988999998777 677888888877664
No 332
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.05 E-value=0.0053 Score=56.81 Aligned_cols=57 Identities=12% Similarity=0.042 Sum_probs=41.2
Q ss_pred ceeeeeeecccccccceeccccCccc-CccCCccceeeEEEEEEECCEEEEEEeecCC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQLRTGL 387 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~-~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~ 387 (617)
.+++++|.+++||||+++++....+. ....|+++.++..+.+.+++..+.|--++|+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~ 62 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL 62 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCc
Confidence 45555556699999999999977653 2334667788888999999977665544443
No 333
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.05 E-value=0.0033 Score=60.23 Aligned_cols=53 Identities=23% Similarity=0.207 Sum_probs=40.0
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECC-EEEEEEe
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE-NKVKLQL 383 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~-~~v~LqI 383 (617)
++++++|..++|||+++++++.+.|...+.+|++..+....+..++ ..+.++|
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l 65 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNV 65 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEE
Confidence 4444444559999999999999999998999999998777666654 3355553
No 334
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=96.04 E-value=0.024 Score=45.40 Aligned_cols=67 Identities=18% Similarity=0.353 Sum_probs=46.9
Q ss_pred HhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEecc
Q psy3029 455 AITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAKN 526 (617)
Q Consensus 455 ~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~~ 526 (617)
.|..++|++|.|.++||..|.|.|.++..-+-++|+=|....... . ......++|.+..|+.+..-|
T Consensus 8 ~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~----~-~~~lg~v~iRG~~I~~i~~~d 74 (76)
T 3s6n_G 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSG----Q-QNNIGMVVIRGNSIIMLEALE 74 (76)
T ss_dssp ------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC---------CBSSEEECSSSEEEEEC--
T ss_pred HHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCC----c-EeEcCEEEECCCeEEEEEecc
Confidence 467889999999999999999999999999999999888763321 1 112346788999988887643
No 335
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.98 E-value=0.0069 Score=56.24 Aligned_cols=54 Identities=20% Similarity=0.177 Sum_probs=40.5
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecCC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTGL 387 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~ 387 (617)
.+++++|..++|||+++++++.+. ...+.||+|.. .+.+.+++..+.|--++|.
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~~~~~~~Dt~G~ 72 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRGFKLNIWDVGGQ 72 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETTEEEEEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECCEEEEEEECCCC
Confidence 344444445999999999999887 67778999844 5677888877777766665
No 336
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.97 E-value=0.00043 Score=75.51 Aligned_cols=103 Identities=13% Similarity=0.038 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEEecCCcc--cccccc--------hhhhccCCEEEE
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQE--RFRSMA--------PMYYRNANAALL 184 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~Dt~G~e--~~~~~~--------~~~~~~ad~iIl 184 (617)
+|+||||+.++|...-.. ...++.+...........+......+||..|.+ +....+ ..++....+.++
T Consensus 48 pGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~v 126 (469)
T 1bif_A 48 PARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVA 126 (469)
T ss_dssp TTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEE
T ss_pred CCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 999999999999753211 111221111000000001112334678988873 222222 556666788899
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCC
Q psy3029 185 VFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTD 222 (617)
Q Consensus 185 V~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~D 222 (617)
|+|.++. +......|+..+.+.. .+++.+-..++
T Consensus 127 V~D~tn~-~~~~R~~~~~~~~~~~---~~vv~l~~~~~ 160 (469)
T 1bif_A 127 VFDATNT-TRERRAMIFNFGEQNG---YKTFFVESICV 160 (469)
T ss_dssp EEESCCC-SHHHHHHHHHHHHHHT---CEEEEEEECCC
T ss_pred EEeCCCC-CHHHHHHHHHHHHhcC---CcEEEEEEECC
Confidence 9999886 5666677777666532 35555544444
No 337
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.90 E-value=0.0055 Score=55.54 Aligned_cols=52 Identities=17% Similarity=0.110 Sum_probs=34.3
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||++++++.+..+. ...+++|..+ .+.+.+++..+.|++-
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~ 54 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVY 54 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEE
Confidence 45566666699999999999866654 3457788777 6888999999888865
No 338
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=95.90 E-value=0.0058 Score=62.43 Aligned_cols=48 Identities=27% Similarity=0.337 Sum_probs=40.6
Q ss_pred eeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEee
Q psy3029 336 WFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 336 ~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
+|..++|||+++++++.+.|...+.+|++..+ .+.+.+++..+.|+|-
T Consensus 161 ~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~ 208 (332)
T 2wkq_A 161 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLW 208 (332)
T ss_dssp EESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEE
T ss_pred ECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEE
Confidence 33339999999999999999989999998777 6788999999887754
No 339
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.89 E-value=0.0026 Score=59.15 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=39.4
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecCC
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTGL 387 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~ 387 (617)
+++++|..++|||+++++++.+.| ..+.||+|..+ +.+.+++..+.|--++|.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~ 75 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINNTRFLMWDIGGQ 75 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETTEEEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECCEEEEEEECCCC
Confidence 333444449999999999999888 56789998655 677888877776666664
No 340
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.87 E-value=0.0055 Score=56.62 Aligned_cols=54 Identities=20% Similarity=0.098 Sum_probs=39.0
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecCC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTGL 387 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~ 387 (617)
.+++++|..++|||+++++++.+.+ ..+.||+|.. .+.+.+++..+.+--++|.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~ 72 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKNLKLNVWDLGGQ 72 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETTEEEEEEEEC--
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECCEEEEEEECCCC
Confidence 4455555559999999999998888 5678999844 4677888766666655554
No 341
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.77 E-value=0.0041 Score=58.04 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=40.1
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecCC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTGL 387 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~ 387 (617)
++++++|..++|||+++++++.+.|. .+.||+|.. .+.+.+++..+.|--++|.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~ 70 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINNTRFLMWDIGGQ 70 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETTEEEEEEECCC-
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECCEEEEEEECCCC
Confidence 45555555699999999999988887 678999844 4677888866666655554
No 342
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.75 E-value=0.004 Score=56.34 Aligned_cols=53 Identities=17% Similarity=0.053 Sum_probs=38.3
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecCC
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTGL 387 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~ 387 (617)
+++++|..++|||+++++++.+.|.. +.||+| +..+.+..++..+.|--++|.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~Dt~G~ 54 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKNISFTVWDVGGQ 54 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSSCEEEEEECCCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECCEEEEEEEcCCC
Confidence 45555666999999999999888875 579998 445666766666666555554
No 343
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=95.73 E-value=0.031 Score=45.97 Aligned_cols=70 Identities=13% Similarity=0.194 Sum_probs=55.1
Q ss_pred hHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEeccc
Q psy3029 453 MQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAKNV 527 (617)
Q Consensus 453 ~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~~v 527 (617)
+-+|..++|++|.|.++||..|.|.|.++..-+-++|+=|.....+. ...-...++|.+..|+-|...|-
T Consensus 8 ~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~-----~~~~lg~v~IRG~nI~~i~~~d~ 77 (86)
T 3s6n_F 8 KPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGA-----LSGHLGEVLIRCNNVLYIRGVEE 77 (86)
T ss_dssp HHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTE-----EEEEESSEEECGGGEEEEEECC-
T ss_pred HHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCCc-----eeeEccEEEEeCCeEEEEEeCCc
Confidence 46788999999999999999999999999999999999887643210 01122468889999999888763
No 344
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.73 E-value=0.0076 Score=56.18 Aligned_cols=53 Identities=17% Similarity=0.028 Sum_probs=40.4
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTG 386 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~ 386 (617)
++++++|..++|||++++++..+.+.. +.||+|. ..+.+.+++..+.|--++|
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~--~~~~~~~~~~~~~~~Dt~G 75 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV--NLETLQYKNISFEVWDLGG 75 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC--CEEEEEETTEEEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce--EEEEEEECCEEEEEEECCC
Confidence 555566666999999999999888765 6789984 4567788877777766666
No 345
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=95.70 E-value=0.032 Score=45.30 Aligned_cols=70 Identities=13% Similarity=0.223 Sum_probs=55.1
Q ss_pred hHhHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEecc
Q psy3029 451 RFMQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAKN 526 (617)
Q Consensus 451 r~~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~~ 526 (617)
.-+-++..++|++|.|.++||..|.|+|.++..-+-++|+=|...+. ....-...++|.+..|+-|...|
T Consensus 11 ~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~------~~~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 11 TLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIID------GNVYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp CHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEEET------TEEEEEEEEEECGGGEEEEEECC
T ss_pred chHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEEcC------CcccCCCEEEECCCEEEEEEeCC
Confidence 34567888999999999999999999999999999999998888611 11112346788899888887654
No 346
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=95.67 E-value=0.03 Score=47.84 Aligned_cols=73 Identities=14% Similarity=0.188 Sum_probs=48.0
Q ss_pred HhHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEecccc
Q psy3029 452 FMQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAKNVD 528 (617)
Q Consensus 452 ~~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~~v~ 528 (617)
.+-+|..++|++|.|.+|+|..|.|+|.++..-+-++|+=|....... ....-...++|.+..|+-|...|--
T Consensus 17 p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg----~~~~~lg~v~IRG~nI~~I~~pd~l 89 (105)
T 4emh_A 17 PLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDG----DKFFRLPECYIRGNNIKYLRIQDEV 89 (105)
T ss_dssp ---------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTS----CEEEEEEEEEECGGGEEEEEC----
T ss_pred HHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCC----ceeeEcCeEEEeCCeEEEEecCHHH
Confidence 467789999999999999999999999999999999999887653211 0111235788899999999887743
No 347
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.62 E-value=0.0064 Score=59.54 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=38.8
Q ss_pred eeecccccccceeccccCcccCccCC--ccceeeEEEEEEECCEEEEEEeecCCC
Q psy3029 336 WFWLGVGKTSMVVRYIGKMFSHHISP--TIGASFFTAKINVGENKVKLQLRTGLK 388 (617)
Q Consensus 336 ~g~~~vGKssi~~~~~~~~f~~~~~p--TIg~df~~k~v~~d~~~v~LqI~~~~~ 388 (617)
+|..++|||++++++++..+.....+ +++.++....+.+++..+.|--++|+-
T Consensus 35 vG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~ 89 (239)
T 3lxx_A 35 VGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIF 89 (239)
T ss_dssp ECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC
T ss_pred ECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCcc
Confidence 33339999999999998877665555 677777778889999888887777764
No 348
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=95.61 E-value=0.04 Score=44.21 Aligned_cols=69 Identities=14% Similarity=0.217 Sum_probs=53.8
Q ss_pred hHHhHhhcCCEEEEEEeCC-cEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEecc
Q psy3029 453 MQAITLHIGDKVTVYTVHG-KQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAKN 526 (617)
Q Consensus 453 ~~~~~~~iG~~v~v~~~~G-~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~~ 526 (617)
+-++..++|++|.|++++| ..|.|+|.++..-+-++|+=|....... ...-...++|.+..|+-|...|
T Consensus 7 ~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~-----~~~~lg~v~iRG~nI~~i~~~d 76 (77)
T 1ljo_A 7 NQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEE-----KVRSLGEIVLRGNNVVLIQPQE 76 (77)
T ss_dssp HHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTE-----EEEEEEEEEECGGGEEEEEEC-
T ss_pred HHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCC-----cEeECCeEEEeCCeEEEEEeCC
Confidence 4578899999999999999 9999999999999999999888764211 1112246788888888887654
No 349
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.61 E-value=0.0066 Score=57.15 Aligned_cols=54 Identities=17% Similarity=0.029 Sum_probs=38.2
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecCC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTGL 387 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~ 387 (617)
++++++|..++|||+++++++.+.|.. +.||+| +..+.+..++..+.|--++|.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~Dt~G~ 83 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKNICFTVWDVGGQ 83 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETTEEEEEEECC--
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECCEEEEEEECCCC
Confidence 444555555999999999999888874 578998 445677777766666655554
No 350
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=95.57 E-value=0.0057 Score=65.94 Aligned_cols=24 Identities=8% Similarity=-0.173 Sum_probs=19.1
Q ss_pred CCccccCCCCCCCCHHHHHHHHHc
Q psy3029 105 PNCFEANWFWLGVGKTSMVVRYIG 128 (617)
Q Consensus 105 ~~~~~~i~G~~nVGKSSLinrl~~ 128 (617)
+.++++|+|.+++|||+|+|+|++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhh
Confidence 445555666699999999999985
No 351
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.51 E-value=0.013 Score=53.29 Aligned_cols=54 Identities=22% Similarity=0.132 Sum_probs=40.0
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecCC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTGL 387 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~ 387 (617)
++++++|..++|||++++++..+.|.. +.||+|.. .+.+.+++..+.|--++|.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~~~~~~~Dt~G~ 61 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYKNLKFQVWDLGGL 61 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEETTEEEEEEEECCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEECCEEEEEEECCCC
Confidence 445555556999999999999888764 67888754 4677888777777666653
No 352
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.43 E-value=0.0097 Score=56.34 Aligned_cols=53 Identities=11% Similarity=0.015 Sum_probs=34.9
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTG 386 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~ 386 (617)
.+++++|.+++|||++++++..+.|. .+.||++... +.+.+++..+.+--++|
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~l~i~Dt~G 78 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAGMTFTTFDLGG 78 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETTEEEEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECCEEEEEEECCC
Confidence 45555566699999999999988875 4679998864 67888885555544444
No 353
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.40 E-value=0.01 Score=55.19 Aligned_cols=53 Identities=21% Similarity=0.134 Sum_probs=37.2
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTG 386 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~ 386 (617)
++++++|..++|||++++++..+.+. .+.||+|. ..+.+.+++..+.+--++|
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~~~l~i~Dt~G 69 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQGFKLNVWDIGG 69 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEETTEEEEEEECSS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEECCEEEEEEECCC
Confidence 44555555599999999999987654 46789984 4567888876555544444
No 354
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=95.34 E-value=0.04 Score=44.00 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=50.9
Q ss_pred hHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEe
Q psy3029 453 MQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEA 524 (617)
Q Consensus 453 ~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~ 524 (617)
+-++..++|++|.|.++||..|.|.|.++..-+-++|+=|.....+. ...-...++|.+..|+-+..
T Consensus 6 ~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~-----~~~~lg~v~iRG~~I~~i~~ 72 (75)
T 4emk_B 6 NEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGK-----KTNVYGDAFIRGNNVLYVSA 72 (75)
T ss_dssp HHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETTE-----EEEEEEEEEEEGGGSSEEEE
T ss_pred HHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecCC-----cccEecEEEEcCCeEEEEEe
Confidence 45788999999999999999999999999999999998887653211 01122356777777777654
No 355
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.044 Score=46.04 Aligned_cols=76 Identities=13% Similarity=0.210 Sum_probs=55.8
Q ss_pred HhHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCC--CCCCcccceeeeecCceeEEEeccc
Q psy3029 452 FMQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQC--IDPNTVVDMKIFKLDDIVRIEAKNV 527 (617)
Q Consensus 452 ~~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~v~~~~~~v 527 (617)
..-++..++|++|.|.+++|..|.|+|.++..-+-++|.=|.......... .....-...+++.+..|+.|...+-
T Consensus 11 p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d~ 88 (96)
T 3bw1_A 11 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPSE 88 (96)
T ss_dssp HHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC-
T ss_pred HHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecCc
Confidence 355788999999999999999999999999999999999887653211110 0001112367889999999887653
No 356
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=95.30 E-value=0.028 Score=46.67 Aligned_cols=71 Identities=15% Similarity=0.351 Sum_probs=52.2
Q ss_pred hHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecC--CCCCCCC-C--CCcccceeeeecCceeEEEecc
Q psy3029 456 ITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVD--PENPQCI-D--PNTVVDMKIFKLDDIVRIEAKN 526 (617)
Q Consensus 456 ~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~--~~~~~~~-~--~~~~~~~l~~~~~d~v~~~~~~ 526 (617)
|..++|++|.|.+++|..|.|+|.++..-+-++|.=|.... ....... . ..--...++|.+..|+.|.+.+
T Consensus 9 L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~~ 84 (91)
T 1d3b_B 9 MLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84 (91)
T ss_dssp CGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEEE
T ss_pred HHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcCC
Confidence 56789999999999999999999999999999999887642 1110000 0 0111235788999999988865
No 357
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.27 E-value=0.014 Score=54.87 Aligned_cols=52 Identities=15% Similarity=0.115 Sum_probs=36.7
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecC
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTG 386 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~ 386 (617)
+++++|..++||||+++++..+.|. .+.||++.. .+.+.+++..+.+--++|
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~~~~~i~Dt~G 76 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGNIKFTTFDLGG 76 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETTEEEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECCEEEEEEECCC
Confidence 3344444499999999999988876 467899885 467888885554443333
No 358
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.26 E-value=0.074 Score=50.93 Aligned_cols=86 Identities=13% Similarity=0.055 Sum_probs=56.1
Q ss_pred EEEEEEEecCCc-ccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHH
Q psy3029 154 KVKLQVWDTAGQ-ERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNRE 232 (617)
Q Consensus 154 ~~~l~i~Dt~G~-e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~ 232 (617)
.+.+.|+|+++. .. ......+..+|.+|+++.. +..++..+...+..+.... ..++.+|.|++|..... ..+
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~--~~~ 139 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTP-DALALDALMLTIETLQKLG--NNRFRILLTIIPPYPSK--DGD 139 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECS-SHHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTSC--HHH
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecC-CchhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccch--HHH
Confidence 356889999876 32 2345567789999999986 3456677777777666533 35688999999964301 123
Q ss_pred HHHHHHHhcCCeEE
Q psy3029 233 EAFHYSKSIGGTYY 246 (617)
Q Consensus 233 e~~~~~~~~g~~~~ 246 (617)
+..++.++++.+++
T Consensus 140 ~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 140 EARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHTTCCBC
T ss_pred HHHHHHHHcCCchh
Confidence 44455555666544
No 359
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=95.18 E-value=0.05 Score=44.36 Aligned_cols=67 Identities=19% Similarity=0.340 Sum_probs=50.8
Q ss_pred HhHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEE
Q psy3029 452 FMQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIE 523 (617)
Q Consensus 452 ~~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~ 523 (617)
-+-++..++|++|.|.++||..|.|.|.++..-+-++|+=|.....+. ...-...++|.+..|+.|.
T Consensus 16 P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~-----~~~~lg~v~IRG~~I~~i~ 82 (83)
T 1mgq_A 16 PLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGE-----VTRRLGTVLIRGDNIVYIS 82 (83)
T ss_dssp TTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTE-----EEEEEEEEEECGGGEEEEE
T ss_pred hHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCC-----cccCCCEEEECCCEEEEEE
Confidence 355788899999999999999999999999999999999888764321 1111235677777776653
No 360
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.11 E-value=0.011 Score=59.59 Aligned_cols=58 Identities=12% Similarity=-0.044 Sum_probs=46.4
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecCCC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTGLK 388 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~ 388 (617)
++++++|..++||||+++++++..+.....|+++.++....+..++..+.|--++|.-
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~ 61 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTY 61 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCC
Confidence 4455556669999999999998877666778888999889999988888876666653
No 361
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.10 E-value=0.013 Score=58.26 Aligned_cols=56 Identities=14% Similarity=0.032 Sum_probs=45.4
Q ss_pred eeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecCCC
Q psy3029 333 EANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTGLK 388 (617)
Q Consensus 333 ~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~ 388 (617)
++++|..++||||+++++++..+.....|+++.++....+.+++..+.|--++|.-
T Consensus 4 I~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~ 59 (256)
T 3iby_A 4 ALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVY 59 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCS
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcc
Confidence 44455559999999999998877666678999999899999999988887777653
No 362
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.05 E-value=0.011 Score=58.32 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=40.6
Q ss_pred hhhheeeeccCCCCCCCcceeeeeeecccccccceeccccCcccCccCCc--cceeeEEEEEEECCEEEEEEeecCC
Q psy3029 313 AETAKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPT--IGASFFTAKINVGENKVKLQLRTGL 387 (617)
Q Consensus 313 ~~~~v~ivG~~~~s~~~~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pT--Ig~df~~k~v~~d~~~v~LqI~~~~ 387 (617)
..++|++||.+ ++|||+++++++...+.....++ +........+.+++..+.|--++|+
T Consensus 20 ~~l~I~lvG~~----------------g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~ 80 (247)
T 3lxw_A 20 STRRLILVGRT----------------GAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDI 80 (247)
T ss_dssp CEEEEEEESST----------------TSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSC
T ss_pred CceEEEEECCC----------------CCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCC
Confidence 35777777777 99999999999977654333222 3334445677888999888888888
No 363
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=95.02 E-value=0.05 Score=45.38 Aligned_cols=69 Identities=10% Similarity=0.148 Sum_probs=50.9
Q ss_pred HhHHhHhhcCCEEEEEEeCC-cEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEec
Q psy3029 452 FMQAITLHIGDKVTVYTVHG-KQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAK 525 (617)
Q Consensus 452 ~~~~~~~~iG~~v~v~~~~G-~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~ 525 (617)
.+-+|..++|++|.|.++|| ..|.|+|.++..-+-++|+=|.....+. . ..-...++|.+..|+-|...
T Consensus 22 P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~----~-~~~lg~v~IRG~nI~~I~~~ 91 (93)
T 1n9r_A 22 PKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGV----S-HGTLGEIFIRCNNVLYIREL 91 (93)
T ss_dssp ----CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTE----E-EEECCSEEECGGGEEEEEEC
T ss_pred hHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCC----e-EeEcCEEEEcCCeEEEEEeC
Confidence 45578889999999999999 9999999999999999999887763210 0 11223678888888877654
No 364
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=95.00 E-value=0.09 Score=46.62 Aligned_cols=67 Identities=16% Similarity=0.303 Sum_probs=55.9
Q ss_pred hHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEecccc
Q psy3029 453 MQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAKNVD 528 (617)
Q Consensus 453 ~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~~v~ 528 (617)
+-+|..++|++|.|.++||..|.|+|.++..-+-++|+=|..... . -...++|.+..|+-|...+-.
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~~--------~-~lg~v~IRG~nI~~I~~~d~~ 68 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKAG--------E-KFNRVFIMYRYIVHIDSTERR 68 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTTC--------C-EEEEEEECGGGEEEEEECCCC
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEcC--------C-EeceEEEeCCeEEEEEcCCcc
Confidence 457889999999999999999999999999999999998887531 1 224678899999999887743
No 365
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.99 E-value=0.017 Score=57.85 Aligned_cols=57 Identities=16% Similarity=-0.026 Sum_probs=46.3
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecCC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTGL 387 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~ 387 (617)
.+++++|..++||||+++++++..+.....|+++.++....+.+++..+.|--++|+
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 60 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGI 60 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCc
Confidence 345555566999999999999888876778999999999999999988777766654
No 366
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.92 E-value=0.014 Score=55.66 Aligned_cols=51 Identities=22% Similarity=0.123 Sum_probs=35.7
Q ss_pred cceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCE-EEEEEe
Q psy3029 330 NCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGEN-KVKLQL 383 (617)
Q Consensus 330 ~~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~-~v~LqI 383 (617)
.++++++|..++||||++++++.+.|...+. |++.++.. +.+++. .++|+|
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i 58 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAI--YKVNNNRGNSLTL 58 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEEE--EECSSTTCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeEE--EEecCCCccEEEE
Confidence 4556666666999999999999999988875 45566643 677743 344443
No 367
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.90 E-value=0.017 Score=55.94 Aligned_cols=51 Identities=16% Similarity=0.079 Sum_probs=32.8
Q ss_pred eecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecCC
Q psy3029 337 FWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTGL 387 (617)
Q Consensus 337 g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~ 387 (617)
|..++||||++++++.+.|.....+....++....+..++..+.|--++|+
T Consensus 36 G~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 86 (228)
T 2qu8_A 36 GAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGL 86 (228)
T ss_dssp CSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTT
T ss_pred CCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCC
Confidence 333999999999999888764444444455555566667766666666665
No 368
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.83 E-value=0.015 Score=52.25 Aligned_cols=56 Identities=18% Similarity=0.099 Sum_probs=35.6
Q ss_pred eeeeeeecccccccceeccccCccc-CccCCccceeeEEEEEEECCEEEEEEeecCC
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQLRTGL 387 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~-~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~ 387 (617)
+++++|..++|||++++++..+.+. ....++++.++..+.+.+++..+.|--++|+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 59 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGL 59 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCC
Confidence 4555666699999999999987654 3345667777878888999887766655543
No 369
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.80 E-value=0.02 Score=56.57 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=39.5
Q ss_pred ecccccccceeccccCc-ccCccCCc-cceeeEEEEEEECCEEEEEEeecCC
Q psy3029 338 WLGVGKTSMVVRYIGKM-FSHHISPT-IGASFFTAKINVGENKVKLQLRTGL 387 (617)
Q Consensus 338 ~~~vGKssi~~~~~~~~-f~~~~~pT-Ig~df~~k~v~~d~~~v~LqI~~~~ 387 (617)
..++||||++++++... |...+.++ ++.++....+.+++..+.|--++|+
T Consensus 30 ~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~ 81 (260)
T 2xtp_A 30 KTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDM 81 (260)
T ss_dssp CTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGG
T ss_pred CCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCC
Confidence 33999999999999776 67666666 6777777788889988887766665
No 370
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.77 E-value=0.01 Score=59.50 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=33.5
Q ss_pred ceeeeeeecccccccceeccc-cCcccCcc-------CCccceeeEEEEEEECCEEEE--EEeecCC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYI-GKMFSHHI-------SPTIGASFFTAKINVGENKVK--LQLRTGL 387 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~-~~~f~~~~-------~pTIg~df~~k~v~~d~~~v~--LqI~~~~ 387 (617)
++++++|.+++|||+++++++ .+.+...+ .+|++.++....+..++..+. |--++|+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~ 75 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGF 75 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCc
Confidence 455566666999999999955 45566666 799999998887777776444 4445554
No 371
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=94.65 E-value=0.0071 Score=62.49 Aligned_cols=47 Identities=15% Similarity=0.045 Sum_probs=34.3
Q ss_pred eeeeeeecccccccceeccccCcccC---ccCCccceeeEEEEEEECCEEEEEEe
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSH---HISPTIGASFFTAKINVGENKVKLQL 383 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~---~~~pTIg~df~~k~v~~d~~~v~LqI 383 (617)
|++++|.++|||||++.++..+.+.. .+.||||.+|.. ++ ..++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqI 50 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAV 50 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEE
Confidence 46677888999999999877654433 368999999953 23 3467776
No 372
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.52 E-value=0.023 Score=56.58 Aligned_cols=57 Identities=18% Similarity=-0.026 Sum_probs=43.0
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecCC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTGL 387 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~ 387 (617)
++++++|..++||||+++++++..+.....|+++.+.....+..++..+.|--++|.
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~ 62 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGT 62 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCc
Confidence 344455555999999999999877765556778788877788887877777766665
No 373
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=94.32 E-value=0.2 Score=41.71 Aligned_cols=68 Identities=15% Similarity=0.221 Sum_probs=53.3
Q ss_pred hHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEe
Q psy3029 453 MQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEA 524 (617)
Q Consensus 453 ~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~ 524 (617)
+-++..++|++|.|.+++|..|.|+|.++..-+-++|+=|....... ....-...++|.+..|+-|..
T Consensus 22 l~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~----~~~~~lg~v~IRG~nI~~i~p 89 (94)
T 4emk_A 22 LELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVT----GVTEKHSEMLLNGNGMCMLIP 89 (94)
T ss_dssp HHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTT----CCEEEEEEEEECSTTEEEEEE
T ss_pred HHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCC----CcEeEcCEEEEcCCEEEEEEe
Confidence 57889999999999999999999999999998999998887764110 111223467888888887765
No 374
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=94.18 E-value=0.16 Score=43.84 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=50.1
Q ss_pred hHhHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCC--CCCCcccceeeeecCceeEEEeccc
Q psy3029 451 RFMQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQC--IDPNTVVDMKIFKLDDIVRIEAKNV 527 (617)
Q Consensus 451 r~~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~v~~~~~~v 527 (617)
+-+..|..++|+.|.|++++|..|.|+|.++..-+-+||.=|.......... ....-....++|.+..|+.|..-|-
T Consensus 23 e~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~ 101 (113)
T 4emk_C 23 ESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDG 101 (113)
T ss_dssp ---------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC-
T ss_pred chHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCc
Confidence 3456677889999999999999999999999999999999888764321110 0111122368899999999988663
No 375
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.16 E-value=0.055 Score=55.06 Aligned_cols=91 Identities=19% Similarity=0.114 Sum_probs=51.9
Q ss_pred EEEEEEEecCCcccccc-cc---hhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCcc
Q psy3029 154 KVKLQVWDTAGQERFRS-MA---PMYYR--NANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSR 227 (617)
Q Consensus 154 ~~~l~i~Dt~G~e~~~~-~~---~~~~~--~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~ 227 (617)
...+.|+||+|...... +. ...+. ..+.+++|+|.+.. ...+.++...+.. -. ..-+|.||.|....
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~~- 254 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETTS- 254 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCSC-
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCcccc-
Confidence 34688999999754321 11 11222 36788999987653 3444444333321 11 23466799997532
Q ss_pred ccCHHHHHHHHHhcCCeEEEEcCCCCCCH
Q psy3029 228 EVNREEAFHYSKSIGGTYYETSALQDQGI 256 (617)
Q Consensus 228 ~v~~~e~~~~~~~~g~~~~evSAktg~gI 256 (617)
...+..++...++++..++ .|+++
T Consensus 255 ---~g~~~~~~~~~~~pi~~i~--~ge~v 278 (296)
T 2px0_A 255 ---LGSVFNILAESKIGVGFMT--NGQNV 278 (296)
T ss_dssp ---CHHHHHHHHTCSCCCSEEC--CSSCT
T ss_pred ---hhHHHHHHHHHCcCEEEEE--CCCCC
Confidence 2345667778888876664 34444
No 376
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=93.98 E-value=0.15 Score=49.35 Aligned_cols=72 Identities=15% Similarity=0.341 Sum_probs=53.8
Q ss_pred HhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCC--CCCC---CCCCCcccceeeeecCceeEEEecc
Q psy3029 455 AITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDP--ENPQ---CIDPNTVVDMKIFKLDDIVRIEAKN 526 (617)
Q Consensus 455 ~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~--~~~~---~~~~~~~~~~l~~~~~d~v~~~~~~ 526 (617)
.|..+|+++|.|+++||..|.|+|.++..-+-+||+=+..... .... ..........++|..+.|+.|.+.+
T Consensus 8 kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve~ 84 (231)
T 3pgw_B 8 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84 (231)
T ss_pred HHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEecC
Confidence 3567899999999999999999999999989999988876521 1100 0011122236889999999999876
No 377
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=93.94 E-value=0.035 Score=57.28 Aligned_cols=51 Identities=18% Similarity=0.067 Sum_probs=36.2
Q ss_pred eeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecC
Q psy3029 333 EANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTG 386 (617)
Q Consensus 333 ~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~ 386 (617)
++++|..++|||++++++..+.|...+ ||++..+. .+..++..+.|--++|
T Consensus 168 I~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~~--~~~~~~~~l~i~Dt~G 218 (329)
T 3o47_A 168 ILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE--TVEYKNISFTVWDVGG 218 (329)
T ss_dssp EEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEEE--EEEETTEEEEEEECC-
T ss_pred EEEECCCCccHHHHHHHHhCCCCCCcc-cccceEEE--EEecCcEEEEEEECCC
Confidence 333444499999999999998887654 89988774 5666776666655555
No 378
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.68 E-value=0.0064 Score=57.34 Aligned_cols=49 Identities=14% Similarity=-0.070 Sum_probs=30.0
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEE--C-CEEEEEEe
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINV--G-ENKVKLQL 383 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~--d-~~~v~LqI 383 (617)
+++++|..+||||++++++.. .|... +|++.++..+.+.. . ++.++|+|
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i 73 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFH-KMSPN--ETLFLESTNKIYKDDISNSSFVNFQI 73 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHS-CCCGG--GGGGCCCCCSCEEEEECCTTSCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHh-cCCCc--ceeeeccccceeeeeccCCCeeEEEE
Confidence 333334449999999986554 44433 77888776655543 2 45555554
No 379
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=93.64 E-value=0.54 Score=40.57 Aligned_cols=58 Identities=14% Similarity=0.239 Sum_probs=43.3
Q ss_pred hHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEE--EeeeecCCCCCCCCCCCcccceeeeecCceeEEEeccccc
Q psy3029 456 ITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVI--SMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAKNVDL 529 (617)
Q Consensus 456 ~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~~v~~ 529 (617)
++-++|+.|.|++++|.+|.|+...+.++ .++| .-|.. ....|.++||.++.+-.+..
T Consensus 7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd~k-~LtL~~~~a~~---------------s~~~I~asdI~DLkVl~~~~ 66 (125)
T 4a53_A 7 VADFYGSNVEVLLNNDSKARGVITNFDSS-NSILQLRLAND---------------STKSIVTKDIKDLRILPKNE 66 (125)
T ss_dssp HHHHTTCEEEEEETTSCEEEEEEEEEETT-TTEEEEEETTT---------------EEEEEEGGGEEEEEECCSCC
T ss_pred HHHhcCceEEEEECCCCEeeEEEEeecCC-eeEEecccccc---------------ccceeecccccceeeeeccc
Confidence 56789999999999999999999987543 3444 43310 12288999999998877654
No 380
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.63 E-value=0.022 Score=53.14 Aligned_cols=22 Identities=23% Similarity=0.064 Sum_probs=17.3
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
.++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4455555999999999999863
No 381
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=93.44 E-value=0.23 Score=41.29 Aligned_cols=72 Identities=13% Similarity=0.245 Sum_probs=50.9
Q ss_pred hHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCC-CCC-------CCCcccceeeeecCceeEEEe
Q psy3029 453 MQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENP-QCI-------DPNTVVDMKIFKLDDIVRIEA 524 (617)
Q Consensus 453 ~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~-~~~-------~~~~~~~~l~~~~~d~v~~~~ 524 (617)
+-++..++|++|.|.+++|..|.|.|.++..-+-++|.=|........ .+. ........+++.+..|+.|..
T Consensus 11 l~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nVv~I~p 90 (93)
T 4emg_A 11 LDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAP 90 (93)
T ss_dssp THHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGEEEEEC
T ss_pred HHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeEEEEEe
Confidence 467788899999999999999999999999999999988876532111 010 001122357778888877754
No 382
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.29 E-value=0.051 Score=55.43 Aligned_cols=55 Identities=18% Similarity=0.076 Sum_probs=37.3
Q ss_pred ceeeeeeecccccccceeccccC--ccc-CccCCccceeeEEEEEEECC-EEEEEEeecCC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGK--MFS-HHISPTIGASFFTAKINVGE-NKVKLQLRTGL 387 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~--~f~-~~~~pTIg~df~~k~v~~d~-~~v~LqI~~~~ 387 (617)
.|++++|..++|||+++++++.+ .+. ..+.+|++.++.. +.+++ ..+.+--++|.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~~~~l~i~Dt~G~ 62 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLGNMTLNLWDCGGQ 62 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETTTEEEEEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCCceEEEEEECCCc
Confidence 34555555599999999999876 454 3678999998864 45543 44555445553
No 383
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.06 E-value=0.039 Score=51.31 Aligned_cols=54 Identities=17% Similarity=0.035 Sum_probs=26.0
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecC
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTG 386 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~ 386 (617)
+++++|..++|||+++++++...|...+.++.|..+......+++ .+.|--++|
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~Dt~G 78 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND-ELHFVDVPG 78 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT-TEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC-cEEEEECCC
Confidence 344444449999999999998887777777777666545455544 233333444
No 384
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.91 E-value=0.2 Score=53.80 Aligned_cols=84 Identities=21% Similarity=0.116 Sum_probs=46.4
Q ss_pred EEEEEEEecCCcccccc-cch-----hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCe-EEEEEECCCCCCc
Q psy3029 154 KVKLQVWDTAGQERFRS-MAP-----MYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLV-LCVVGNKTDLESS 226 (617)
Q Consensus 154 ~~~l~i~Dt~G~e~~~~-~~~-----~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iP-vIlVgNK~DL~~~ 226 (617)
.+.+.|+||+|...... +.. ..+...+.+++|+|+....... ..+..+... ++ .-+|.||+|....
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~~~----l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFNEA----LPLTGVVLTKVDGDAR 255 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHHHH----SCCCCEEEECTTSSSC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHhcc----CCCeEEEEecCCCCcc
Confidence 35688999999654321 111 1234688999999987543322 122222221 23 3478999997432
Q ss_pred cccCHHHHHHHHHhcCCeEEEE
Q psy3029 227 REVNREEAFHYSKSIGGTYYET 248 (617)
Q Consensus 227 ~~v~~~e~~~~~~~~g~~~~ev 248 (617)
. ..+..+....+.++..+
T Consensus 256 ~----g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 256 G----GAALSIRHITGKPIKFL 273 (433)
T ss_dssp C----THHHHHHHHHCCCEEEE
T ss_pred H----HHHHHHHHHHCCCeEEE
Confidence 2 12334555556654433
No 385
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=92.81 E-value=0.04 Score=59.96 Aligned_cols=59 Identities=12% Similarity=0.073 Sum_probs=29.8
Q ss_pred ceeeeeeecccccccceeccccCcc-cCccCCccceeeEEEEEEECCEEEEEEeecCCCc
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMF-SHHISPTIGASFFTAKINVGENKVKLQLRTGLKV 389 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f-~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~~ 389 (617)
++++++|..++||||++++++...+ .....|+++.++....+.+++..+.|--++|+..
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~ 293 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE 293 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence 3444455559999999999998753 3444577788888899999999888888888743
No 386
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.76 E-value=0.037 Score=52.92 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=15.3
Q ss_pred CCCCCCCCHHHHHHHHHcC
Q psy3029 111 NWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 111 i~G~~nVGKSSLinrl~~~ 129 (617)
|+|++|||||||+++|++.
T Consensus 24 l~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 24 LIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHhh
Confidence 3344999999999999854
No 387
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.70 E-value=0.089 Score=53.56 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=36.9
Q ss_pred eeeeeeecccccccceeccccCccc-CccCCccceeeEEEEEEECCEEEEEEeecCCC
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQLRTGLK 388 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~-~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~ 388 (617)
+++++|.+++||||+++++++..+. ....|.+..+.....+..++..+.|--++|+-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~ 66 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLH 66 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCcccc
Confidence 4445555599999999999988775 33444443444344455666777766666654
No 388
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.67 E-value=0.035 Score=52.72 Aligned_cols=20 Identities=15% Similarity=0.080 Sum_probs=16.1
Q ss_pred ccCCCCCCCCHHHHHHHHHc
Q psy3029 109 EANWFWLGVGKTSMVVRYIG 128 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~ 128 (617)
++|+|++|+|||||++.|++
T Consensus 7 i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 44445599999999999975
No 389
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.66 E-value=0.052 Score=51.29 Aligned_cols=46 Identities=17% Similarity=0.008 Sum_probs=23.3
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE 376 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~ 376 (617)
.+++++|..++|||++++++++..|...+.||.|..+....+.+++
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~ 72 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD 72 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC
Confidence 3455555559999999999998776666677888776555554443
No 390
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=92.64 E-value=0.042 Score=59.88 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=43.4
Q ss_pred eeeeeeecccccccceeccccCccc-CccCCccceeeEEEEEEECCEEEEEEeecCCC
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQLRTGLK 388 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~-~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~ 388 (617)
+++++|..++||||++++++...+. ....|+++.|+..+.+.+++..+.|--++|+.
T Consensus 245 kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~ 302 (482)
T 1xzp_A 245 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 302 (482)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCC
T ss_pred EEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCcc
Confidence 3444444499999999999976542 33457777888889999999998888888764
No 391
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.59 E-value=0.042 Score=50.71 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=29.2
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASF 367 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df 367 (617)
+++++|..++||||++++++.+.|...+.|+++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~ 38 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI 38 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee
Confidence 456666669999999999999999888888776554
No 392
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.50 E-value=0.041 Score=51.94 Aligned_cols=23 Identities=26% Similarity=0.095 Sum_probs=18.0
Q ss_pred ccccCCCCCCCCHHHHHHHHHcC
Q psy3029 107 CFEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 107 ~~~~i~G~~nVGKSSLinrl~~~ 129 (617)
.+++|+|++|+|||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 34555566999999999999864
No 393
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.43 E-value=0.11 Score=51.59 Aligned_cols=57 Identities=21% Similarity=0.126 Sum_probs=39.1
Q ss_pred eeeeeeecccccccceeccccCcc--cCccCCccceeeEEEEEEECCEEEEEEeecCCCc
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMF--SHHISPTIGASFFTAKINVGENKVKLQLRTGLKV 389 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f--~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~~ 389 (617)
+++++|..++||||++++++...+ ...+ +++........+.+++..+.|--++|+-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~l~liDTpG~~~ 96 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPF-QAEGLRPVMVSRTMGGFTINIIDTPGLVE 96 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSCCSCCCSS-CC-CCCCEEEEEEETTEEEEEEECCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCC-CCcceeeEEEEEEECCeeEEEEECCCCCC
Confidence 334444449999999999998764 3333 33344555677888999888888888743
No 394
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=92.41 E-value=0.054 Score=59.04 Aligned_cols=53 Identities=15% Similarity=0.014 Sum_probs=38.0
Q ss_pred ceeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTG 386 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~ 386 (617)
.+++++|..+||||+++++++.+.+.. +.||+|..+. .+.+++..+.|--++|
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~--~~~~~~~~~~l~Dt~G 375 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTYKNVKFNVWDVGG 375 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE--EEESSSCEEEEEEECC
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE--EEEeCCEEEEEEECCC
Confidence 344444455999999999999888765 4689988774 4666676666665655
No 395
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=92.35 E-value=0.022 Score=62.85 Aligned_cols=31 Identities=35% Similarity=0.452 Sum_probs=18.7
Q ss_pred ccccccceeccccCcccCccCCccceeeEEE
Q psy3029 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTA 370 (617)
Q Consensus 340 ~vGKssi~~~~~~~~f~~~~~pTIg~df~~k 370 (617)
+|||||++++++...|...+.||+|.++.++
T Consensus 51 ~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~ 81 (535)
T 3dpu_A 51 MAGKTSLLKQLIGETFDPKESQTHGLNVVTK 81 (535)
T ss_dssp CSSHHHHHHHHHC-----------CCCEEEE
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceEEEEe
Confidence 9999999999999999999999999999765
No 396
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.00 E-value=0.052 Score=52.45 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=16.9
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|++|+|||||++.|.+-
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3444455999999999999873
No 397
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.90 E-value=0.085 Score=49.34 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=14.2
Q ss_pred CCCCCCHHHHHHHHHcC
Q psy3029 113 FWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 113 G~~nVGKSSLinrl~~~ 129 (617)
|++|+|||||++.+++.
T Consensus 7 G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 7 GEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CCTTSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 33999999999998764
No 398
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.85 E-value=0.053 Score=51.72 Aligned_cols=20 Identities=20% Similarity=-0.023 Sum_probs=15.7
Q ss_pred cCCCCCCCCHHHHHHHHHcC
Q psy3029 110 ANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 110 ~i~G~~nVGKSSLinrl~~~ 129 (617)
+|+|++|+|||||++.+.+-
T Consensus 24 ~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 24 VLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHhh
Confidence 33344999999999999864
No 399
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.70 E-value=0.13 Score=52.35 Aligned_cols=58 Identities=16% Similarity=0.086 Sum_probs=38.4
Q ss_pred ceeeeeeecccccccceeccccCcccC-ccCCccceeeEEEEEEEC-CEEEEEEeecCCC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSH-HISPTIGASFFTAKINVG-ENKVKLQLRTGLK 388 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~-~~~pTIg~df~~k~v~~d-~~~v~LqI~~~~~ 388 (617)
.+++++|..++||||+++++++..+.. ...+.+..+.....+..+ +..+.|--++|+-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~ 70 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIY 70 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCC
Confidence 344444555999999999999887753 334444444445556677 7777777676653
No 400
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.65 E-value=0.054 Score=56.60 Aligned_cols=23 Identities=26% Similarity=0.223 Sum_probs=17.9
Q ss_pred cccCCCCCCCCHHHHHHHHHcCC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGKM 130 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~~ 130 (617)
.++|+|++|||||||+|.|++..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 34444559999999999999754
No 401
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.63 E-value=0.079 Score=55.43 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=32.4
Q ss_pred ceeeeeeecccccccceeccc-cCcccCcc--------CCccceeeEEEEEEECCEEEEEEee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYI-GKMFSHHI--------SPTIGASFFTAKINVGENKVKLQLR 384 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~-~~~f~~~~--------~pTIg~df~~k~v~~d~~~v~LqI~ 384 (617)
++++++|..++|||+++++++ .+.|...+ .+|++.++....+..++..+.|.|-
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~ 100 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVV 100 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEE
Confidence 556667777999999999955 45555444 3788888877777777776666654
No 402
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.61 E-value=0.053 Score=50.59 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=14.7
Q ss_pred CCCCCCHHHHHHHHHcC
Q psy3029 113 FWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 113 G~~nVGKSSLinrl~~~ 129 (617)
|++|+|||||++.|.+.
T Consensus 16 G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 16 GHPGSGKSTIAEALANL 32 (191)
T ss_dssp ECTTSCHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHhc
Confidence 33999999999999874
No 403
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.56 E-value=0.058 Score=52.31 Aligned_cols=21 Identities=19% Similarity=0.119 Sum_probs=16.4
Q ss_pred ccCCCCCCCCHHHHHHHHHcC
Q psy3029 109 EANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~~ 129 (617)
++|+|++|+|||||++.|.+.
T Consensus 19 i~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 334444999999999999864
No 404
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.43 E-value=0.059 Score=50.45 Aligned_cols=21 Identities=14% Similarity=0.108 Sum_probs=16.7
Q ss_pred ccCCCCCCCCHHHHHHHHHcC
Q psy3029 109 EANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~~ 129 (617)
++|+|++|+|||||++.|++.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 345566999999999999853
No 405
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.41 E-value=0.055 Score=50.05 Aligned_cols=20 Identities=15% Similarity=0.080 Sum_probs=15.5
Q ss_pred cccCCCCCCCCHHHHHHHHH
Q psy3029 108 FEANWFWLGVGKTSMVVRYI 127 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~ 127 (617)
+++++|++|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 44555559999999999765
No 406
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=91.32 E-value=0.033 Score=60.36 Aligned_cols=58 Identities=17% Similarity=0.093 Sum_probs=41.2
Q ss_pred ceeeeeeecccccccceeccccCccc-CccCCccceeeEEEEEEECCEEEEEEeecCCC
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGENKVKLQLRTGLK 388 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~-~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~ 388 (617)
++++++|..++||||++++++...+. ....|+++.++..+.+.+++..+.|--++|+.
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~ 283 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIR 283 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC-----
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccc
Confidence 34555555599999999999976553 34457788888888999999998887777763
No 407
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.29 E-value=0.067 Score=49.62 Aligned_cols=21 Identities=19% Similarity=-0.037 Sum_probs=16.0
Q ss_pred cccCCCCCCCCHHHHHHHHHc
Q psy3029 108 FEANWFWLGVGKTSMVVRYIG 128 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~ 128 (617)
+++|.|.+||||||+.+.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 344445599999999999864
No 408
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.28 E-value=0.065 Score=51.20 Aligned_cols=21 Identities=19% Similarity=-0.070 Sum_probs=16.6
Q ss_pred ccCCCCCCCCHHHHHHHHHcC
Q psy3029 109 EANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~~ 129 (617)
++|+|++|||||||++.|...
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhh
Confidence 444455999999999999865
No 409
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.95 E-value=0.037 Score=53.12 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=28.5
Q ss_pred eeeeeecccccccceeccccCcccCccCCccceeeE
Q psy3029 333 EANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFF 368 (617)
Q Consensus 333 ~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~ 368 (617)
++++|..++||||++++++...|...+.+||+.+|.
T Consensus 41 i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~ 76 (226)
T 2hf9_A 41 FDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76 (226)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred EEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence 344444599999999999988887777788888874
No 410
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=90.93 E-value=0.39 Score=41.95 Aligned_cols=75 Identities=13% Similarity=0.222 Sum_probs=54.6
Q ss_pred HhHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCC--C----CCCC--C--CcccceeeeecCceeE
Q psy3029 452 FMQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPEN--P----QCID--P--NTVVDMKIFKLDDIVR 521 (617)
Q Consensus 452 ~~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~--~----~~~~--~--~~~~~~l~~~~~d~v~ 521 (617)
=+-+|..++|++|.|.+++|..|.|+|.++..-+-++|+=|....... . .+.. . ..-...++|.+..|+-
T Consensus 29 Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nVv~ 108 (121)
T 2fwk_A 29 PLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVAM 108 (121)
T ss_dssp HHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGEEE
T ss_pred cHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEEEE
Confidence 367889999999999999999999999999998999998876553210 0 0100 0 1122467889999998
Q ss_pred EEecc
Q psy3029 522 IEAKN 526 (617)
Q Consensus 522 ~~~~~ 526 (617)
|...+
T Consensus 109 I~~~~ 113 (121)
T 2fwk_A 109 LVPGG 113 (121)
T ss_dssp EESSS
T ss_pred EEecC
Confidence 88755
No 411
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.81 E-value=0.095 Score=53.67 Aligned_cols=58 Identities=9% Similarity=0.026 Sum_probs=42.4
Q ss_pred HHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy3029 203 ELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267 (617)
Q Consensus 203 ~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~eLf~~I~~~l 267 (617)
.+.++....+|+ ||++|.|.. .++..+.+++.+++++.+++.+...+..+..+|...+
T Consensus 72 rler~l~~~~P~-IIltrg~~~------peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~ 129 (314)
T 1ko7_A 72 RMRKLCRPETPA-IIVTRDLEP------PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHEL 129 (314)
T ss_dssp HHHHHCCTTCCC-EEECTTCCC------CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCE-EEEeCCCCC------CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhh
Confidence 344444455676 677888864 2456788889999999999999888888877766543
No 412
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=90.70 E-value=0.21 Score=48.58 Aligned_cols=140 Identities=11% Similarity=0.082 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHcCCCCCccCCCcceeEEEEEEEECCeEEEEEEE-ecCCc-cccc-----ccchhhhccCCEEEEEEe
Q psy3029 115 LGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVW-DTAGQ-ERFR-----SMAPMYYRNANAALLVFD 187 (617)
Q Consensus 115 ~nVGKSSLinrl~~~~~~~~~~~t~g~~~~~~~i~~~~~~~~l~i~-Dt~G~-e~~~-----~~~~~~~~~ad~iIlV~D 187 (617)
+++||+.|++++.+.. ......+ ......-......+-|| |.-.. ..+. .-.+....-..++|+||+
T Consensus 38 ~~~~~~~~~~~lf~~~-~~~~~i~-----k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EVR~viggII~~f~ 111 (233)
T 3uc9_A 38 HNFLKTQFLQDLFHCS-STGISIV-----KDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPLRNVMAGIILITD 111 (233)
T ss_dssp GHHHHHHHHHHHHCCC-CCSSCEE-----EEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHHHHTEEEEEEEEC
T ss_pred ccccHHHHHHHHhccc-ccccccc-----cCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHHHHhcceEEEEEe
Confidence 9999999999998863 1111111 12222222233444443 44221 1110 011111223478999998
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCC----------CCCCHH
Q psy3029 188 ITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSAL----------QDQGIE 257 (617)
Q Consensus 188 is~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAk----------tg~gI~ 257 (617)
...+..+..+.+.+ .-...+.-+++|+.-.+......-..++...++...|+.|+..... ...|++
T Consensus 112 ~p~~~~~~~i~~~~----~~~~~dg~~v~Vg~~~~~~~~~~de~~e~~~~~~~~GfE~V~~~~~~~~~~~ne~gE~~Gi~ 187 (233)
T 3uc9_A 112 IRQTKPQELLHQFM----IAAHRNTFVVLVNVNEEVEQDEIDELNEIWSNAFTNVIEFVNWKRSKPTVNHNDYGEKLGLD 187 (233)
T ss_dssp HHHHCGGGTHHHHH----HHSCTTCEEEEEECCTTCCHHHHHHHHHHHTTSSSSCEEEEECC----CCCBCTTSCBCHHH
T ss_pred CCCcchHHHHHHHh----ccCCCCceEEEEecCCccCCCchhhHHHHHHHHHhcCeEEEEecCCCcccccccccchhCHH
Confidence 65554444433322 2223334555665433321111000112222334467788865321 234667
Q ss_pred HHHHHHH
Q psy3029 258 DVFLNVS 264 (617)
Q Consensus 258 eLf~~I~ 264 (617)
.+++.|-
T Consensus 188 RI~E~Le 194 (233)
T 3uc9_A 188 RIQEIID 194 (233)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666653
No 413
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.66 E-value=0.082 Score=51.79 Aligned_cols=22 Identities=23% Similarity=0.013 Sum_probs=17.5
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4555555999999999999863
No 414
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.49 E-value=0.097 Score=48.11 Aligned_cols=20 Identities=15% Similarity=-0.147 Sum_probs=15.9
Q ss_pred ccCCCCCCCCHHHHHHHHHc
Q psy3029 109 EANWFWLGVGKTSMVVRYIG 128 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~ 128 (617)
+.+.|++|+||||+.+.|..
T Consensus 6 i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 34445599999999999975
No 415
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=90.43 E-value=1.9 Score=34.76 Aligned_cols=68 Identities=15% Similarity=0.259 Sum_probs=50.8
Q ss_pred CchHhHHhHhhcCCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEec
Q psy3029 449 NARFMQAITLHIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAK 525 (617)
Q Consensus 449 n~r~~~~~~~~iG~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~ 525 (617)
..|++++++.++|.+|++++..+..-.|.|.++..+..-.. +..... +=.+.+.-++-..||+++.++
T Consensus 17 ReRfLr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~--Vs~L~T-------PiGv~~eAlLR~~Dii~~sF~ 84 (85)
T 1y96_B 17 RERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFY--VSQLQT-------PIGVQAEALLRCSDIISYTFK 84 (85)
T ss_dssp HHHHHHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEE--EEEECC-------TTCCEEEEEEEGGGEEEEEEC
T ss_pred HHHHHHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeE--hhhcCC-------CcccchhhhhhcCCEEEEEec
Confidence 35999999999999999999999999999999887765322 112111 112445567888999988763
No 416
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=90.41 E-value=0.13 Score=53.99 Aligned_cols=54 Identities=19% Similarity=0.040 Sum_probs=32.1
Q ss_pred eeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECCEEEEEEeecC
Q psy3029 333 EANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTG 386 (617)
Q Consensus 333 ~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~ 386 (617)
++++|..++||||+++++++..+.....+....|+....+.+++..+.|--++|
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G 235 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVG 235 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCC
Confidence 334444499999999999987664433344445677788999997776654444
No 417
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.32 E-value=0.1 Score=49.56 Aligned_cols=21 Identities=19% Similarity=0.195 Sum_probs=16.2
Q ss_pred ccCCCCCCCCHHHHHHHHHcC
Q psy3029 109 EANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~~ 129 (617)
++|+|++|||||||+++|...
T Consensus 15 i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 344455999999999999753
No 418
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.21 E-value=0.1 Score=53.19 Aligned_cols=22 Identities=27% Similarity=0.135 Sum_probs=18.2
Q ss_pred CccccCCCCCCCCHHHHHHHHH
Q psy3029 106 NCFEANWFWLGVGKTSMVVRYI 127 (617)
Q Consensus 106 ~~~~~i~G~~nVGKSSLinrl~ 127 (617)
...++++|++|||||||+|.|.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3455666779999999999998
No 419
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=90.20 E-value=0.1 Score=47.96 Aligned_cols=20 Identities=15% Similarity=-0.009 Sum_probs=15.5
Q ss_pred ccCCCCCCCCHHHHHHHHHc
Q psy3029 109 EANWFWLGVGKTSMVVRYIG 128 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~ 128 (617)
++|+|++|+|||||++.|.+
T Consensus 11 i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 34444499999999999865
No 420
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.15 E-value=0.083 Score=53.76 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=20.6
Q ss_pred CCccccCCCCCCCCHHHHHHHHHcCC
Q psy3029 105 PNCFEANWFWLGVGKTSMVVRYIGKM 130 (617)
Q Consensus 105 ~~~~~~i~G~~nVGKSSLinrl~~~~ 130 (617)
..-+++++|++|||||||+|.|.+..
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccc
Confidence 34456777889999999999998743
No 421
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.09 E-value=0.1 Score=49.25 Aligned_cols=21 Identities=24% Similarity=-0.040 Sum_probs=16.0
Q ss_pred cccCCCCCCCCHHHHHHHHHc
Q psy3029 108 FEANWFWLGVGKTSMVVRYIG 128 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~ 128 (617)
+++|.|.+|+||||+.+.|..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 344444599999999999965
No 422
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=90.07 E-value=0.033 Score=56.99 Aligned_cols=19 Identities=26% Similarity=0.102 Sum_probs=14.9
Q ss_pred CCCCCCCCHHHHHHHHHcC
Q psy3029 111 NWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 111 i~G~~nVGKSSLinrl~~~ 129 (617)
|+|++|||||||+|.|.+.
T Consensus 178 lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 178 FAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEESHHHHHHHHHHHHCC-
T ss_pred EECCCCCCHHHHHHHhccc
Confidence 3333999999999999864
No 423
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=89.98 E-value=0.65 Score=38.48 Aligned_cols=69 Identities=13% Similarity=0.257 Sum_probs=52.7
Q ss_pred hHHhHhhcCCEEEEEE----eCCcEEEEEEeeecCCceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEec
Q psy3029 453 MQAITLHIGDKVTVYT----VHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAK 525 (617)
Q Consensus 453 ~~~~~~~iG~~v~v~~----~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~ 525 (617)
+-++..++|++|.|++ ++|..|.|+|.++..-+-++|.=|....... ....-...++|.+..|+.|...
T Consensus 18 l~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~----~~~~~lg~v~iRG~nV~~i~~~ 90 (92)
T 3s6n_E 18 INLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT----KSRKQLGRIMLKGDNITLLQSV 90 (92)
T ss_dssp HHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSS----CCEEEEEEEEECGGGEEEEEEC
T ss_pred HHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCC----CceeEcCeEEEeCCEEEEEEeC
Confidence 4678889999999999 9999999999999988899999888764211 1111223577888888877653
No 424
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.88 E-value=0.098 Score=47.82 Aligned_cols=21 Identities=14% Similarity=0.001 Sum_probs=16.3
Q ss_pred ccCCCCCCCCHHHHHHHHHcC
Q psy3029 109 EANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~~ 129 (617)
++|+|++|+|||||.+.|.+.
T Consensus 7 i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 7 IFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 444455999999999999763
No 425
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.76 E-value=0.11 Score=50.99 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=16.7
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3344444999999999999874
No 426
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.66 E-value=0.098 Score=50.82 Aligned_cols=22 Identities=18% Similarity=-0.010 Sum_probs=16.9
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3444455999999999999864
No 427
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=89.63 E-value=0.26 Score=52.98 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=32.6
Q ss_pred CCCCCCHHHHHHHHHc------------------CCCC---CccCCCcceeEEEEEEEE---CCeEEEEEEEecCCcc
Q psy3029 113 FWLGVGKTSMVVRYIG------------------KMFS---HHISPTIGASFFTAKINV---GENKVKLQVWDTAGQE 166 (617)
Q Consensus 113 G~~nVGKSSLinrl~~------------------~~~~---~~~~~t~g~~~~~~~i~~---~~~~~~l~i~Dt~G~e 166 (617)
|..++|||+|+|.|++ ..|. .....|.|+-.....+.+ ++..+.+.++||.|..
T Consensus 74 G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTEG~~ 151 (457)
T 4ido_A 74 GAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTF 151 (457)
T ss_dssp EBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEECCBT
T ss_pred CCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEeccCCC
Confidence 3399999999995541 2231 122345565433222222 5667889999999964
No 428
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.61 E-value=0.11 Score=48.24 Aligned_cols=20 Identities=20% Similarity=0.064 Sum_probs=15.3
Q ss_pred ccCCCCCCCCHHHHHHHHHc
Q psy3029 109 EANWFWLGVGKTSMVVRYIG 128 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~ 128 (617)
++|.|.+|+||||+.++|..
T Consensus 6 I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 34444499999999998864
No 429
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.59 E-value=0.1 Score=48.71 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=16.4
Q ss_pred ccCCCCCCCCHHHHHHHHHcC
Q psy3029 109 EANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~~ 129 (617)
++|.|++|+|||||+++|+..
T Consensus 9 i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHh
Confidence 344455999999999999863
No 430
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.49 E-value=0.12 Score=51.63 Aligned_cols=22 Identities=14% Similarity=-0.147 Sum_probs=17.7
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4555566999999999999874
No 431
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.45 E-value=0.11 Score=49.11 Aligned_cols=20 Identities=25% Similarity=0.042 Sum_probs=15.9
Q ss_pred ccCCCCCCCCHHHHHHHHHc
Q psy3029 109 EANWFWLGVGKTSMVVRYIG 128 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~ 128 (617)
++|+|++|+|||||++.+.+
T Consensus 4 i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHh
Confidence 34455599999999999875
No 432
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.44 E-value=0.12 Score=47.51 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=13.6
Q ss_pred CCCCHHHHHHHHHcC
Q psy3029 115 LGVGKTSMVVRYIGK 129 (617)
Q Consensus 115 ~nVGKSSLinrl~~~ 129 (617)
.|+|||||++.+.+.
T Consensus 42 nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 42 LGAGKTTLTRGMLQG 56 (158)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999999764
No 433
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.42 E-value=0.12 Score=52.03 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=17.7
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|+.|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4555566999999999999873
No 434
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.38 E-value=0.13 Score=50.69 Aligned_cols=19 Identities=21% Similarity=0.074 Sum_probs=15.4
Q ss_pred CCCCCCCCHHHHHHHHHcC
Q psy3029 111 NWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 111 i~G~~nVGKSSLinrl~~~ 129 (617)
|+|+.|+|||||++.+.+-
T Consensus 29 liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 29 LLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EECCTTSSHHHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 3333999999999999874
No 435
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.20 E-value=0.13 Score=50.86 Aligned_cols=22 Identities=14% Similarity=-0.088 Sum_probs=17.0
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|+.|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3444444999999999999874
No 436
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=89.19 E-value=0.11 Score=48.29 Aligned_cols=19 Identities=26% Similarity=0.114 Sum_probs=15.6
Q ss_pred cCCCCCCCCHHHHHHHHHc
Q psy3029 110 ANWFWLGVGKTSMVVRYIG 128 (617)
Q Consensus 110 ~i~G~~nVGKSSLinrl~~ 128 (617)
+|+|++|+|||||++.|.+
T Consensus 6 ~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 6 IITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHhc
Confidence 4445599999999999975
No 437
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=89.17 E-value=1.5 Score=38.05 Aligned_cols=75 Identities=13% Similarity=0.263 Sum_probs=52.8
Q ss_pred HhHHhHhhc--CCEEEEEEeCCcEEEEEEeeecCCceEEEEeeeecCCCCC-CCCC--------CCcccceeeeecCcee
Q psy3029 452 FMQAITLHI--GDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQVDPENP-QCID--------PNTVVDMKIFKLDDIV 520 (617)
Q Consensus 452 ~~~~~~~~i--G~~v~v~~~~G~~y~Gi~~~~s~~~~~~l~~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~d~v 520 (617)
=+-++..++ |+.|.|.+++|..|.|+|.++..-+-++|.=|........ .+.. ..-....++|.+..|+
T Consensus 28 Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~nVv 107 (118)
T 1b34_B 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVI 107 (118)
T ss_dssp HHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGGEE
T ss_pred hHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCEEE
Confidence 345677777 6999999999999999999999999999988876632211 0000 0112346888999998
Q ss_pred EEEecc
Q psy3029 521 RIEAKN 526 (617)
Q Consensus 521 ~~~~~~ 526 (617)
-|...+
T Consensus 108 ~I~~~~ 113 (118)
T 1b34_B 108 VVLRNP 113 (118)
T ss_dssp EEEECC
T ss_pred EEEeCc
Confidence 887754
No 438
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.16 E-value=0.13 Score=49.58 Aligned_cols=22 Identities=18% Similarity=0.022 Sum_probs=17.6
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4555555999999999999874
No 439
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.11 E-value=0.27 Score=45.27 Aligned_cols=44 Identities=20% Similarity=0.064 Sum_probs=27.3
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceeeEEEEEEECC
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE 376 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df~~k~v~~d~ 376 (617)
+++++|..++|||+++++++...+. .+.++.|..........+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~ 68 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS 68 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC
Confidence 3444444499999999999987743 3456666555333333443
No 440
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.09 E-value=0.13 Score=51.07 Aligned_cols=22 Identities=18% Similarity=0.049 Sum_probs=17.5
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4555555999999999999874
No 441
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.01 E-value=0.13 Score=51.30 Aligned_cols=22 Identities=14% Similarity=-0.144 Sum_probs=17.5
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4555555999999999999874
No 442
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.00 E-value=0.13 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.076 Sum_probs=18.5
Q ss_pred ccccCCCCCCCCHHHHHHHHHcC
Q psy3029 107 CFEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 107 ~~~~i~G~~nVGKSSLinrl~~~ 129 (617)
-+++|+|+.|+|||||++.+.+-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 35566666999999999999874
No 443
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.96 E-value=0.13 Score=50.01 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=16.9
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3444444999999999999874
No 444
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.95 E-value=0.13 Score=50.66 Aligned_cols=20 Identities=20% Similarity=-0.132 Sum_probs=15.7
Q ss_pred cCCCCCCCCHHHHHHHHHcC
Q psy3029 110 ANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 110 ~i~G~~nVGKSSLinrl~~~ 129 (617)
+|+|+.|+|||||++.+.+-
T Consensus 32 ~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 32 AFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEECCTTSSHHHHHHHHTTS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 33333999999999999874
No 445
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=88.94 E-value=0.34 Score=48.08 Aligned_cols=56 Identities=20% Similarity=0.085 Sum_probs=34.8
Q ss_pred eeeeeeecccccccceeccccCccc--CccCCccceeeEEEEEEECCEEEEEEeecCCC
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFS--HHISPTIGASFFTAKINVGENKVKLQLRTGLK 388 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~--~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~ 388 (617)
+++++|..++||||++++++...+. ..+.++ ..+.....+..++..+.|--++|+.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~l~iiDTpG~~ 98 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSE-GPRPVMVSRSRAGFTLNIIDTPGLI 98 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCC-CSSCEEEEEEETTEEEEEEECCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccccCCCCc-ceeeEEEEEeeCCeEEEEEECCCCC
Confidence 4444445599999999999987753 222222 2333344556677777777677654
No 446
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.93 E-value=0.14 Score=50.36 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=17.7
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4555566999999999999874
No 447
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.93 E-value=0.13 Score=51.42 Aligned_cols=22 Identities=18% Similarity=-0.028 Sum_probs=17.5
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|+.|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4555555999999999999874
No 448
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=88.92 E-value=0.091 Score=52.71 Aligned_cols=36 Identities=19% Similarity=-0.096 Sum_probs=23.4
Q ss_pred eeeeeeecccccccceeccccCcccCccCCccceee
Q psy3029 332 FEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASF 367 (617)
Q Consensus 332 ~~~~~g~~~vGKssi~~~~~~~~f~~~~~pTIg~df 367 (617)
+++++|.+++||||+++++++..+.....|++..+.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~ 40 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER 40 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE
Confidence 445555559999999999997653333335444443
No 449
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=88.88 E-value=0.23 Score=52.21 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=41.4
Q ss_pred hheeeeccCCCCCCCcceeeeeeecccccccceeccccCcc-cCccCCccceeeEEEEEEECCEEEEEEeecCCC
Q psy3029 315 TAKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMF-SHHISPTIGASFFTAKINVGENKVKLQLRTGLK 388 (617)
Q Consensus 315 ~~v~ivG~~~~s~~~~~~~~~~g~~~vGKssi~~~~~~~~f-~~~~~pTIg~df~~k~v~~d~~~v~LqI~~~~~ 388 (617)
.+|++||.| |||||++++.++...- ...| |....+-..-.+.+++..+.|--++|+-
T Consensus 73 a~V~ivG~P----------------NvGKSTL~n~Lt~~~~~v~~~-pftT~~~~~g~~~~~~~~i~l~D~pGl~ 130 (376)
T 4a9a_A 73 ASVGFVGFP----------------SVGKSTLLSKLTGTESEAAEY-EFTTLVTVPGVIRYKGAKIQMLDLPGII 130 (376)
T ss_dssp EEEEEECCC----------------CHHHHHHHHHHHSBCCCGGGT-CSSCCCEEEEEEEETTEEEEEEECGGGC
T ss_pred CeEEEECCC----------------CCCHHHHHHHHhCCCCcccCC-CCceeeeeeEEEEeCCcEEEEEeCCCcc
Confidence 468888888 9999999999986432 2333 3333444456788999999998888873
No 450
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.84 E-value=0.15 Score=50.41 Aligned_cols=22 Identities=23% Similarity=0.107 Sum_probs=17.6
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4455555999999999999884
No 451
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=88.83 E-value=0.14 Score=47.35 Aligned_cols=14 Identities=43% Similarity=0.603 Sum_probs=12.9
Q ss_pred CCCCHHHHHHHHHc
Q psy3029 115 LGVGKTSMVVRYIG 128 (617)
Q Consensus 115 ~nVGKSSLinrl~~ 128 (617)
+|+|||||++.+.+
T Consensus 47 ~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 47 PGVGKTHLAVATLK 60 (180)
T ss_dssp SSSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999999875
No 452
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.81 E-value=0.15 Score=49.52 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=13.2
Q ss_pred CCCCCCHHHHHHHHH
Q psy3029 113 FWLGVGKTSMVVRYI 127 (617)
Q Consensus 113 G~~nVGKSSLinrl~ 127 (617)
|++|+|||||++.++
T Consensus 37 GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 37 GGTGTGKTTFAAQFI 51 (251)
T ss_dssp CCTTSSHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHH
Confidence 339999999999987
No 453
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.81 E-value=0.13 Score=48.55 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=12.9
Q ss_pred CCCCHHHHHHHHHc
Q psy3029 115 LGVGKTSMVVRYIG 128 (617)
Q Consensus 115 ~nVGKSSLinrl~~ 128 (617)
+|+|||||.+.|.+
T Consensus 34 sGsGKSTl~~~La~ 47 (200)
T 3uie_A 34 SGSGKSTLACALNQ 47 (200)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999999865
No 454
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.78 E-value=0.14 Score=50.95 Aligned_cols=22 Identities=18% Similarity=-0.052 Sum_probs=16.7
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3344444999999999999874
No 455
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.71 E-value=0.099 Score=50.61 Aligned_cols=21 Identities=19% Similarity=0.112 Sum_probs=11.2
Q ss_pred ccCCCCCCCCHHHHHHHHH-cC
Q psy3029 109 EANWFWLGVGKTSMVVRYI-GK 129 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~-~~ 129 (617)
++|+|++|+|||||++.|. +.
T Consensus 30 i~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEECSCC----CHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 3344449999999999998 53
No 456
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.62 E-value=0.15 Score=50.84 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=17.9
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4555555999999999999884
No 457
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=88.59 E-value=0.25 Score=46.72 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHc
Q psy3029 115 LGVGKTSMVVRYIG 128 (617)
Q Consensus 115 ~nVGKSSLinrl~~ 128 (617)
.|+|||||++.|.+
T Consensus 15 ~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 15 TASGKTTLAQALAR 28 (211)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999999876
No 458
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.49 E-value=0.15 Score=50.43 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=16.9
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3444444999999999999874
No 459
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.43 E-value=0.15 Score=50.61 Aligned_cols=22 Identities=18% Similarity=-0.130 Sum_probs=17.6
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4555555999999999999874
No 460
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.41 E-value=0.14 Score=52.45 Aligned_cols=14 Identities=21% Similarity=0.302 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHc
Q psy3029 115 LGVGKTSMVVRYIG 128 (617)
Q Consensus 115 ~nVGKSSLinrl~~ 128 (617)
+|+|||||++.|.+
T Consensus 99 sGsGKSTL~~~L~g 112 (312)
T 3aez_A 99 VAVGKSTTARVLQA 112 (312)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCchHHHHHHHHHh
Confidence 99999999999876
No 461
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.38 E-value=0.14 Score=50.89 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=13.2
Q ss_pred CCCCHHHHHHHHHc
Q psy3029 115 LGVGKTSMVVRYIG 128 (617)
Q Consensus 115 ~nVGKSSLinrl~~ 128 (617)
.|+|||||++.+.+
T Consensus 34 ~GsGKSTll~~l~g 47 (261)
T 2eyu_A 34 TGSGKSTTIASMID 47 (261)
T ss_dssp TTCSHHHHHHHHHH
T ss_pred CCccHHHHHHHHHH
Confidence 99999999999976
No 462
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.34 E-value=0.26 Score=46.81 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHc
Q psy3029 115 LGVGKTSMVVRYIG 128 (617)
Q Consensus 115 ~nVGKSSLinrl~~ 128 (617)
+|+|||||++.|.+
T Consensus 31 sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 31 PGSGKSTLSNPLAA 44 (208)
T ss_dssp TTSCTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999999875
No 463
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.33 E-value=0.082 Score=49.07 Aligned_cols=35 Identities=17% Similarity=0.021 Sum_probs=19.3
Q ss_pred eeeeeecccccccceeccccCcccC---ccCCccceee
Q psy3029 333 EANWFWLGVGKTSMVVRYIGKMFSH---HISPTIGASF 367 (617)
Q Consensus 333 ~~~~g~~~vGKssi~~~~~~~~f~~---~~~pTIg~df 367 (617)
++++|..++||||++++++...+.. .+.||++.+|
T Consensus 51 i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~ 88 (193)
T 2ged_A 51 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY 88 (193)
T ss_dssp EEEECCTTSSHHHHHHHHHHSSCC------------CC
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee
Confidence 3344444999999999999877654 3456665554
No 464
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.31 E-value=0.16 Score=51.22 Aligned_cols=22 Identities=18% Similarity=0.001 Sum_probs=17.8
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|+.|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4555566999999999999874
No 465
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=88.24 E-value=0.17 Score=47.01 Aligned_cols=20 Identities=25% Similarity=0.099 Sum_probs=15.1
Q ss_pred ccCCCCCCCCHHHHHHHHHc
Q psy3029 109 EANWFWLGVGKTSMVVRYIG 128 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~ 128 (617)
+++.|.+|+||||+++.|..
T Consensus 16 i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 33334499999999999864
No 466
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=88.20 E-value=0.16 Score=47.97 Aligned_cols=16 Identities=25% Similarity=0.059 Sum_probs=13.7
Q ss_pred CCCCCCHHHHHHHHHc
Q psy3029 113 FWLGVGKTSMVVRYIG 128 (617)
Q Consensus 113 G~~nVGKSSLinrl~~ 128 (617)
|.+|+|||||.+.|..
T Consensus 25 G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 25 GVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CSTTSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 4499999999999864
No 467
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.20 E-value=0.16 Score=51.93 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=13.1
Q ss_pred CCCCHHHHHHHHHc
Q psy3029 115 LGVGKTSMVVRYIG 128 (617)
Q Consensus 115 ~nVGKSSLinrl~~ 128 (617)
+|+|||||++.|.+
T Consensus 135 sGsGKSTLl~lL~g 148 (305)
T 2v9p_A 135 PNTGKSMLCNSLIH 148 (305)
T ss_dssp SSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhh
Confidence 99999999999876
No 468
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.15 E-value=0.14 Score=48.98 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=14.1
Q ss_pred CCCCCHHHHHHHHHcC
Q psy3029 114 WLGVGKTSMVVRYIGK 129 (617)
Q Consensus 114 ~~nVGKSSLinrl~~~ 129 (617)
++|+|||||++.+++.
T Consensus 33 ~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 33 EFGSGKTQLAHTLAVM 48 (231)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3999999999999863
No 469
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.13 E-value=0.089 Score=50.00 Aligned_cols=37 Identities=16% Similarity=-0.033 Sum_probs=27.9
Q ss_pred ceeeeeeecccccccceeccccCcccC---ccCCccceee
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGKMFSH---HISPTIGASF 367 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~~f~~---~~~pTIg~df 367 (617)
.+++++|..++|||++++++....|.. .+.||++.+|
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~ 52 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY 52 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe
Confidence 344455555999999999999887765 4678887776
No 470
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.90 E-value=0.17 Score=50.15 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=17.2
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3444455999999999999874
No 471
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=87.82 E-value=0.3 Score=45.78 Aligned_cols=21 Identities=24% Similarity=0.028 Sum_probs=16.4
Q ss_pred ccCCCCCCCCHHHHHHHHHcC
Q psy3029 109 EANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~~ 129 (617)
++|+|++|+|||||++.|.+.
T Consensus 9 i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEECSTTSCHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 344444999999999999764
No 472
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.82 E-value=0.12 Score=49.64 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=13.8
Q ss_pred CCCCHHHHHHHHHcC
Q psy3029 115 LGVGKTSMVVRYIGK 129 (617)
Q Consensus 115 ~nVGKSSLinrl~~~ 129 (617)
.|+|||||++.+.+-
T Consensus 31 nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 31 AGSGKTYLAMAKAVQ 45 (208)
T ss_dssp TTSSTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcC
Confidence 999999999999874
No 473
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=87.73 E-value=0.33 Score=51.81 Aligned_cols=57 Identities=18% Similarity=0.040 Sum_probs=34.5
Q ss_pred eeeeeecccccccceeccccCccc-CccCCccceeeEEEEEEECCE-EEEEEeecCCCc
Q psy3029 333 EANWFWLGVGKTSMVVRYIGKMFS-HHISPTIGASFFTAKINVGEN-KVKLQLRTGLKV 389 (617)
Q Consensus 333 ~~~~g~~~vGKssi~~~~~~~~f~-~~~~pTIg~df~~k~v~~d~~-~v~LqI~~~~~~ 389 (617)
++++|..++||||++++++...+. ....++++.++..+.+.+++. .+.|--++|+-+
T Consensus 37 I~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d 95 (423)
T 3qq5_A 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD 95 (423)
T ss_dssp EEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTC
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCc
Confidence 333344499999999999988773 334566667787888998875 777777777654
No 474
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.72 E-value=0.18 Score=50.32 Aligned_cols=22 Identities=18% Similarity=0.018 Sum_probs=17.1
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4444555999999999999874
No 475
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=87.62 E-value=0.17 Score=46.82 Aligned_cols=17 Identities=24% Similarity=0.094 Sum_probs=14.0
Q ss_pred CCCCCCCHHHHHHHHHc
Q psy3029 112 WFWLGVGKTSMVVRYIG 128 (617)
Q Consensus 112 ~G~~nVGKSSLinrl~~ 128 (617)
.|.+|+||||+.+.|..
T Consensus 10 ~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 10 LGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 34499999999999864
No 476
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=87.55 E-value=1 Score=42.03 Aligned_cols=85 Identities=7% Similarity=-0.021 Sum_probs=56.1
Q ss_pred EEEEEEecCCcccccccchhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhcC--CCCCeEEEEEECCCCCCccccCHH
Q psy3029 155 VKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNV--DEPLVLCVVGNKTDLESSREVNRE 232 (617)
Q Consensus 155 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~--~~~iPvIlVgNK~DL~~~~~v~~~ 232 (617)
+.+.|+|+++.. .......+..+|.+|+++..+. .+ ..+..++..+.+.. ...+++.+|.|++|.... . ..
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~--~-~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSP-LD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT--M-LN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCT-TT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE--E-EH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCH-HH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch--H-HH
Confidence 568899999865 3345566778999999998754 34 66666666665543 234678999999995322 1 23
Q ss_pred HHHHHHHhcCCeEE
Q psy3029 233 EAFHYSKSIGGTYY 246 (617)
Q Consensus 233 e~~~~~~~~g~~~~ 246 (617)
+..++.+.++.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 34555566666554
No 477
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=87.15 E-value=0.24 Score=45.66 Aligned_cols=18 Identities=28% Similarity=0.078 Sum_probs=14.5
Q ss_pred CCCCCCCCHHHHHHHHHc
Q psy3029 111 NWFWLGVGKTSMVVRYIG 128 (617)
Q Consensus 111 i~G~~nVGKSSLinrl~~ 128 (617)
|.|.+|+||||+.+.|..
T Consensus 16 i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 16 LTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHH
Confidence 334499999999999863
No 478
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=87.01 E-value=0.2 Score=49.06 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHc
Q psy3029 115 LGVGKTSMVVRYIG 128 (617)
Q Consensus 115 ~nVGKSSLinrl~~ 128 (617)
.|+|||||++.|.+
T Consensus 34 ~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 34 TASGKSTVCEKIME 47 (245)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999999875
No 479
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=86.95 E-value=1.4 Score=35.32 Aligned_cols=62 Identities=13% Similarity=0.212 Sum_probs=44.6
Q ss_pred HhhcCCEEEEEEeCCc-EEEEEEeeecC-CceEEEEeeeecCCCCCCCCCCCcccceeeeecCceeEEEecc
Q psy3029 457 TLHIGDKVTVYTVHGK-QFEGYLKTFSK-QFELVISMTHQVDPENPQCIDPNTVVDMKIFKLDDIVRIEAKN 526 (617)
Q Consensus 457 ~~~iG~~v~v~~~~G~-~y~Gi~~~~s~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~v~~~~~~ 526 (617)
...||+.|.|..+++. +|+|++++.++ +-.|+|.-| ...+.+ ..+.-.+|.++||-++.+-.
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~--f~NG~~------~~s~eVtls~~DI~~L~ii~ 68 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRP--FHNGVK------CLVPEVTFRAGDITELKILE 68 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEE--EETTEE------CSSSEEEEEGGGCSEEEEEE
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehh--hhCCCC------CCCcEEEEEecChhheEEEe
Confidence 3579999999999999 99999999875 346766555 323221 11123788999998877744
No 480
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=86.94 E-value=0.22 Score=51.90 Aligned_cols=22 Identities=23% Similarity=0.104 Sum_probs=17.8
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|++|+|||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4555556999999999999874
No 481
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=86.87 E-value=0.2 Score=52.29 Aligned_cols=22 Identities=23% Similarity=0.058 Sum_probs=18.0
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|++|+|||||++.+.+-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5555666999999999999874
No 482
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=86.82 E-value=0.35 Score=45.56 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=14.5
Q ss_pred CCCCCCHHHHHHHHHcC
Q psy3029 113 FWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 113 G~~nVGKSSLinrl~~~ 129 (617)
|++|||||||+++|+..
T Consensus 8 GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 8 GPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCTTSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 44999999999999754
No 483
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=86.73 E-value=0.24 Score=46.38 Aligned_cols=21 Identities=14% Similarity=-0.095 Sum_probs=16.0
Q ss_pred ccCCCCCCCCHHHHHHHHHcC
Q psy3029 109 EANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~~ 129 (617)
++|.|.+|+||||+.+.|...
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 333444999999999999763
No 484
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.63 E-value=0.2 Score=49.90 Aligned_cols=22 Identities=23% Similarity=0.013 Sum_probs=17.5
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|+.|+|||||++.+.+-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4555555999999999999873
No 485
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=86.56 E-value=0.24 Score=51.84 Aligned_cols=23 Identities=13% Similarity=-0.109 Sum_probs=18.7
Q ss_pred ccccCCCCCCCCHHHHHHHHHcC
Q psy3029 107 CFEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 107 ~~~~i~G~~nVGKSSLinrl~~~ 129 (617)
-+++|+|++|+|||||++.+.+-
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHhcC
Confidence 45666666999999999999874
No 486
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=86.56 E-value=0.24 Score=51.74 Aligned_cols=22 Identities=32% Similarity=0.258 Sum_probs=18.1
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 5556666999999999999874
No 487
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=86.48 E-value=0.26 Score=46.44 Aligned_cols=19 Identities=11% Similarity=-0.172 Sum_probs=14.8
Q ss_pred cCCCCCCCCHHHHHHHHHc
Q psy3029 110 ANWFWLGVGKTSMVVRYIG 128 (617)
Q Consensus 110 ~i~G~~nVGKSSLinrl~~ 128 (617)
+|.|.+|+||||+.+.|..
T Consensus 14 ~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 14 VFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 3334499999999999864
No 488
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=86.43 E-value=0.24 Score=51.74 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=18.0
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4555566999999999999874
No 489
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=86.43 E-value=0.39 Score=43.24 Aligned_cols=16 Identities=19% Similarity=0.005 Sum_probs=13.5
Q ss_pred CCCCCCCCHHHHHHHH
Q psy3029 111 NWFWLGVGKTSMVVRY 126 (617)
Q Consensus 111 i~G~~nVGKSSLinrl 126 (617)
|.|++|+||||+.+.|
T Consensus 6 l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 6 ITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EECCTTSCHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 3344999999999999
No 490
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.27 E-value=0.17 Score=51.76 Aligned_cols=22 Identities=18% Similarity=-0.047 Sum_probs=17.7
Q ss_pred ccccCCCCCCCCHHHHHHHHHc
Q psy3029 107 CFEANWFWLGVGKTSMVVRYIG 128 (617)
Q Consensus 107 ~~~~i~G~~nVGKSSLinrl~~ 128 (617)
-+++|+|+.|+|||||++.+.+
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 3555666699999999998876
No 491
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=86.24 E-value=0.25 Score=51.96 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=18.7
Q ss_pred ccccCCCCCCCCHHHHHHHHHcC
Q psy3029 107 CFEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 107 ~~~~i~G~~nVGKSSLinrl~~~ 129 (617)
-+++|+|++|+|||||++.+.+-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHcC
Confidence 35566666999999999999874
No 492
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=86.22 E-value=0.22 Score=50.60 Aligned_cols=29 Identities=10% Similarity=0.127 Sum_probs=18.3
Q ss_pred ceeeeeeecccccccceeccccC-cccCcc
Q psy3029 331 CFEANWFWLGVGKTSMVVRYIGK-MFSHHI 359 (617)
Q Consensus 331 ~~~~~~g~~~vGKssi~~~~~~~-~f~~~~ 359 (617)
++++++|..++||||+++++... .++..+
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g 48 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERV 48 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC--------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence 56677778899999999997653 555443
No 493
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=86.20 E-value=0.43 Score=46.49 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHH
Q psy3029 115 LGVGKTSMVVRYI 127 (617)
Q Consensus 115 ~nVGKSSLinrl~ 127 (617)
+|+|||||++.|.
T Consensus 36 ~GsGKSTl~k~La 48 (246)
T 2bbw_A 36 PGSGKGTVCQRIA 48 (246)
T ss_dssp TTSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 9999999999998
No 494
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=86.12 E-value=0.26 Score=51.74 Aligned_cols=22 Identities=27% Similarity=0.140 Sum_probs=18.2
Q ss_pred cccCCCCCCCCHHHHHHHHHcC
Q psy3029 108 FEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 108 ~~~i~G~~nVGKSSLinrl~~~ 129 (617)
+++|+|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 5566666999999999999874
No 495
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=86.12 E-value=0.26 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.092 Sum_probs=18.9
Q ss_pred ccccCCCCCCCCHHHHHHHHHcC
Q psy3029 107 CFEANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 107 ~~~~i~G~~nVGKSSLinrl~~~ 129 (617)
-+++|+|++|+|||||++.+.+-
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 45666677999999999999874
No 496
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.02 E-value=0.22 Score=50.35 Aligned_cols=21 Identities=33% Similarity=0.308 Sum_probs=16.1
Q ss_pred ccCCCCCCCCHHHHHHHHHcC
Q psy3029 109 EANWFWLGVGKTSMVVRYIGK 129 (617)
Q Consensus 109 ~~i~G~~nVGKSSLinrl~~~ 129 (617)
++|+|+.|+|||||++.+.+-
T Consensus 67 ~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 67 LAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEESTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 333444999999999999874
No 497
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=86.00 E-value=0.25 Score=50.32 Aligned_cols=68 Identities=13% Similarity=0.083 Sum_probs=34.0
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCeEEEEEECCCCCCccccCHHHHHHHHHhcCCeEEEEcCCCCCCHH
Q psy3029 178 NANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIE 257 (617)
Q Consensus 178 ~ad~iIlV~Dis~~~S~~~l~~~l~~i~~~~~~~iPvIlVgNK~DL~~~~~v~~~e~~~~~~~~g~~~~evSAktg~gI~ 257 (617)
..+.++++.|........ ..+..+.+... ..+|+.||.|..... ..+..+....+.++.++. +|++++
T Consensus 220 ~P~~~lLvLDa~t~~~~~---~~~~~~~~~~~---~t~iivTh~d~~a~g----g~~l~i~~~~~~pi~~ig--~Ge~~~ 287 (304)
T 1rj9_A 220 EPKEVWLVLDAVTGQNGL---EQAKKFHEAVG---LTGVIVTKLDGTAKG----GVLIPIVRTLKVPIKFVG--VGEGPD 287 (304)
T ss_dssp CCSEEEEEEETTBCTHHH---HHHHHHHHHHC---CSEEEEECTTSSCCC----TTHHHHHHHHCCCEEEEE--CSSSTT
T ss_pred CCCeEEEEEcHHHHHHHH---HHHHHHHHHcC---CcEEEEECCcccccc----cHHHHHHHHHCCCeEEEe--CCCChh
Confidence 466677788866543221 22222222111 235777888753221 123455556677766665 344443
No 498
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=85.99 E-value=0.35 Score=45.84 Aligned_cols=22 Identities=14% Similarity=-0.080 Sum_probs=16.8
Q ss_pred eeeeecccccccceeccccCcc
Q psy3029 334 ANWFWLGVGKTSMVVRYIGKMF 355 (617)
Q Consensus 334 ~~~g~~~vGKssi~~~~~~~~f 355 (617)
+++|..++|||+++++++...+
T Consensus 33 ~v~G~~~~GKSslin~l~~~~~ 54 (223)
T 4dhe_A 33 AFAGRSNAGKSTAINVLCNQKR 54 (223)
T ss_dssp EEEESCHHHHHHHHHHHTTCSS
T ss_pred EEEcCCCCCHHHHHHHHhCCCc
Confidence 3333449999999999998763
No 499
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=85.95 E-value=0.44 Score=45.20 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHHHc
Q psy3029 115 LGVGKTSMVVRYIG 128 (617)
Q Consensus 115 ~nVGKSSLinrl~~ 128 (617)
+|+||||+.+.|..
T Consensus 9 ~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 9 PGAGKGTQAEQIIE 22 (216)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999999954
No 500
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.89 E-value=0.89 Score=46.53 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=12.9
Q ss_pred CCCCHHHHHHHHHc
Q psy3029 115 LGVGKTSMVVRYIG 128 (617)
Q Consensus 115 ~nVGKSSLinrl~~ 128 (617)
+|+|||||++.+.+
T Consensus 45 ~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 45 NGTGKKTRCMALLE 58 (354)
T ss_dssp TTSSHHHHHHTHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999998876
Done!