RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3029
(617 letters)
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 212 bits (541), Expect = 1e-65
Identities = 63/152 (41%), Positives = 99/152 (65%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GK+S+V+R++ F TIGA+FF+ + V + VK ++WDTAGQER+ S+APMY
Sbjct: 22 GAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY 81
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++VFD+T SF K WV+EL+ + +V+ + GNK+DL +R+V E+A
Sbjct: 82 YRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQ 141
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y++ G + ETSA ++++F +++ L
Sbjct: 142 TYAQENGLFFMETSAKTATNVKEIFYEIARRL 173
Score = 56.0 bits (136), Expect = 3e-09
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
G GK+S+V+R++ F TIGA+FF+ + V + VK ++
Sbjct: 22 GAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEI 65
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 209 bits (535), Expect = 6e-65
Identities = 64/153 (41%), Positives = 99/153 (64%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S++ R++ F +I+PTIGASF T + K +WDTAG ERFR++APMY
Sbjct: 16 GVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMY 75
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR + AA++V+DIT+ +F+ +K WV+EL+++ +V+ + GNK DL REV +A
Sbjct: 76 YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAK 135
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
Y+ SI + ETSA I ++F+ +S+ +
Sbjct: 136 DYADSIHAIFVETSAKNAININELFIEISRRIP 168
Score = 55.6 bits (135), Expect = 3e-09
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+S++ R++ F +I+PTIGASF T + K +
Sbjct: 16 GVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLI 59
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 209 bits (534), Expect = 8e-65
Identities = 76/153 (49%), Positives = 110/153 (71%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKTS+V+RY F+ T+GASF T K+N+G +V L +WDTAGQERF ++ P+Y
Sbjct: 16 CVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIY 75
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR++N A+LV+DIT SF +K WVKEL++ + + LC+VGNK DLE R V+ +EA
Sbjct: 76 YRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAE 135
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
Y++S+G +Y TSA Q++GIE++FL++ K +I
Sbjct: 136 SYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168
Score = 55.2 bits (134), Expect = 4e-09
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS+V+RY F+ T+GASF T K+N+G +V L +
Sbjct: 16 CVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAI 59
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 207 bits (530), Expect = 3e-64
Identities = 65/152 (42%), Positives = 96/152 (63%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F TIGA+F T + + + VK ++WDTAGQER+ S+APMY
Sbjct: 16 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 75
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AA++V+DIT SFA K WVKEL+R +V+ + GNK DL + R V+ +EA
Sbjct: 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQ 135
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y+ + ETSA + ++F+ ++K L
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
Score = 54.4 bits (132), Expect = 7e-09
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F TIGA+F T + + + VK ++
Sbjct: 16 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 59
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 208 bits (532), Expect = 3e-64
Identities = 75/152 (49%), Positives = 102/152 (67%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S+V R++ F H+ISPTIGASF T + G K +WDTAGQERF S+APMY
Sbjct: 33 GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMY 92
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR + AA++V+DIT+ SF +K WVKELK + E +V+ + GNK DL REV ++A
Sbjct: 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAK 152
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
Y++SIG ETSA IE++F +S+ +
Sbjct: 153 EYAESIGAIVVETSAKNAINIEELFQGISRQI 184
Score = 54.9 bits (133), Expect = 7e-09
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+S+V R++ F H+ISPTIGASF T + G K +
Sbjct: 33 GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLI 76
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 204 bits (522), Expect = 2e-62
Identities = 54/152 (35%), Positives = 89/152 (58%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKTS++ R++ F + TIG F + + + + V+LQ+WDTAG ERFRS+ P Y
Sbjct: 26 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSY 85
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
R++ A++V+DIT +SF W+ +++ +++ +VGNKTDL R+V+ EE
Sbjct: 86 IRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGE 145
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
+K + + ETSA ++ +F V+ L
Sbjct: 146 RKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 177
Score = 53.9 bits (130), Expect = 2e-08
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS++ R++ F + TIG F + + + + V+LQL
Sbjct: 26 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 69
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 202 bits (517), Expect = 4e-62
Identities = 55/152 (36%), Positives = 90/152 (59%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKTS++ R++ F + TIG F + + + + V+LQ+WDTAGQERFRS+ P Y
Sbjct: 24 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 83
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
R++ A++V+DIT +SF W+ +++ +++ +VGNKTDL R+V+ EE
Sbjct: 84 IRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE 143
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
+K + + ETSA ++ +F V+ L
Sbjct: 144 RKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
Score = 53.3 bits (129), Expect = 2e-08
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS++ R++ F + TIG F + + + + V+LQL
Sbjct: 24 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 67
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 194 bits (495), Expect = 8e-59
Identities = 57/150 (38%), Positives = 90/150 (60%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK++++ R+ F+ TIG F T I V +K Q+WDTAG ER+R++ Y
Sbjct: 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 98
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLV+DI ++ ++ ++ W+KEL+ + D +V+ +VGNK+DL R V +EA
Sbjct: 99 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEAR 158
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
+++ G ++ ETSAL +E F +
Sbjct: 159 AFAEKNGLSFIETSALDSTNVEAAFQTILT 188
Score = 50.7 bits (122), Expect = 2e-07
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK++++ R+ F+ TIG F T I V +K Q+
Sbjct: 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 194 bits (496), Expect = 1e-58
Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 1/154 (0%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAK-INVGENKVKLQVWDTAGQERFRSMAPM 174
GVGKT+ + R + F + + T+GA ++ N +K VWDTAGQE+ + +
Sbjct: 21 GVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDV 80
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEA 234
YY A+ A+L FD+T + + WVKE + V + V NK D+++ ++++++
Sbjct: 81 YYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLV 140
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
K Y+E SA FL++++
Sbjct: 141 MEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFT 174
Score = 47.7 bits (114), Expect = 3e-06
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAK-INVGENKVKLQ 382
GVGKT+ + R + F + + T+GA ++ N +K
Sbjct: 21 GVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFN 64
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 192 bits (491), Expect = 2e-58
Identities = 59/150 (39%), Positives = 91/150 (60%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ ++ ++ K F TIG F T I V K+KLQ+WDTAGQERFR++ Y
Sbjct: 25 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSY 84
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AL+V+DIT+ ++ + +W+ + + + V+ ++GNK DLE+ R+V EEA
Sbjct: 85 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAK 144
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
+++ G + E SA + +ED FL +K
Sbjct: 145 QFAEENGLLFLEASAKTGENVEDAFLEAAK 174
Score = 50.7 bits (122), Expect = 2e-07
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ ++ ++ K F TIG F T I V K+KLQ+
Sbjct: 25 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI 68
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 191 bits (489), Expect = 4e-58
Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 1/153 (0%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+SM+ RY +F+ TIG F +I V + V+L +WDTAGQE F ++ Y
Sbjct: 15 AVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAY 74
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A A +LVF T SF AI +W +++ V + + +V NK DL + EEA
Sbjct: 75 YRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD-IPTALVQNKIDLLDDSCIKNEEAE 133
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
+K + +Y TS +D + +VF +++ +
Sbjct: 134 GLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166
Score = 52.5 bits (127), Expect = 3e-08
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+SM+ RY +F+ TIG F +I V + V+L L
Sbjct: 15 AVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLML 58
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 191 bits (489), Expect = 4e-58
Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 4/159 (2%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINV-GENKVKLQVWDTAGQERFRSMAPM 174
GKTS+ + + F TIG FF +I + G V LQ+WD GQ M
Sbjct: 16 ASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDK 75
Query: 175 YYRNANAALLVFDITQYHSFAAIKTW---VKELKRNVDEPLVLCVVGNKTDLESSREVNR 231
Y A LLV+DIT Y SF ++ W VK++ + ++ +VGNK DLE R +
Sbjct: 76 YIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKP 135
Query: 232 EEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICL 270
E+ + + G + + SA + F V+ ++ +
Sbjct: 136 EKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174
Score = 50.6 bits (122), Expect = 1e-07
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINV-GENKVKLQL 383
GKTS+ + + F TIG FF +I + G V LQ+
Sbjct: 16 ASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQI 60
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 192 bits (490), Expect = 4e-58
Identities = 65/150 (43%), Positives = 96/150 (64%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKT+++ R+ FSH TIG F T + +G VK Q+WDTAG ER+R++ Y
Sbjct: 35 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAY 94
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLVFD+T++ ++A ++ W+KEL + + +V+ +VGNK+DL +REV EEA
Sbjct: 95 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEAR 154
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++++ G + ETSAL +E F V K
Sbjct: 155 MFAENNGLLFLETSALDSTNVELAFETVLK 184
Score = 50.7 bits (122), Expect = 2e-07
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKT+++ R+ FSH TIG F T + +G VK Q+
Sbjct: 35 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 78
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 192 bits (490), Expect = 5e-58
Identities = 58/153 (37%), Positives = 91/153 (59%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GK+ ++ ++I F + TIG F + +NVG VKLQ+WDTAGQERFRS+ Y
Sbjct: 35 GTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSY 94
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLV+DIT ++ ++ W+ + + +V+ + GNK DL+ REV EA
Sbjct: 95 YRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEAS 154
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
+++ + ETSAL + +E+ FL ++ ++
Sbjct: 155 RFAQENELMFLETSALTGENVEEAFLKCARTIL 187
Score = 50.7 bits (122), Expect = 2e-07
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
G GK+ ++ ++I F + TIG F + +NVG VKLQ+
Sbjct: 35 GTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQI 78
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 191 bits (487), Expect = 1e-57
Identities = 60/153 (39%), Positives = 94/153 (61%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GK+ ++ ++I K F + TIG F + INVG VKLQ+WDTAGQERFRS+ Y
Sbjct: 20 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSY 79
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLV+DIT ++ A+ W+ + + + +V+ + GNK DL++ REV EA
Sbjct: 80 YRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEAS 139
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
+++ + ETSAL + +E+ F+ ++ ++
Sbjct: 140 RFAQENELMFLETSALTGENVEEAFVQCARKIL 172
Score = 49.5 bits (119), Expect = 4e-07
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
G GK+ ++ ++I K F + TIG F + INVG VKLQ+
Sbjct: 20 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 63
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 190 bits (486), Expect = 2e-57
Identities = 58/150 (38%), Positives = 91/150 (60%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK++++ R+ F+ TIG F T I V +K Q+WDTAGQER+R + Y
Sbjct: 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAY 74
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLV+DI ++ ++ ++ W+KEL+ + D +V+ +VGNK+DL R V +EA
Sbjct: 75 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEAR 134
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
+++ ++ ETSAL +E+ F N+
Sbjct: 135 AFAEKNNLSFIETSALDSTNVEEAFKNILT 164
Score = 49.6 bits (119), Expect = 5e-07
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK++++ R+ F+ TIG F T I V +K Q+
Sbjct: 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 58
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 191 bits (487), Expect = 3e-57
Identities = 58/195 (29%), Positives = 103/195 (52%), Gaps = 1/195 (0%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK++++ R+ F+ TIG F T + + ++K Q+WDTAGQER+R++ Y
Sbjct: 23 GVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAY 82
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A AL+V+DI++ S+ W+ EL+ N D+ + + ++GNK+DL R V EE+
Sbjct: 83 YRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESK 142
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI-CLSQESLHTSSLRVYDSDNITSANPR 294
+++ + ETSAL + ++ F + + +S+ + + N SA
Sbjct: 143 TFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANGASAPNG 202
Query: 295 GVVEITPLSSLDTPP 309
+ +TP + +
Sbjct: 203 PTISLTPTPNENKKA 217
Score = 50.1 bits (120), Expect = 4e-07
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK++++ R+ F+ TIG F T + + ++K Q+
Sbjct: 23 GVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQI 66
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 189 bits (483), Expect = 5e-57
Identities = 59/150 (39%), Positives = 96/150 (64%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ +++++ K F TIG F +N+ ++KLQ+WDTAGQE FRS+ Y
Sbjct: 31 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY 90
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A ALLV+DIT+ +F + +W+++ +++ +V+ ++GNK+DLES R+V REE
Sbjct: 91 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGE 150
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
+++ G + ETSA +E+ F+N +K
Sbjct: 151 AFAREHGLIFMETSAKTACNVEEAFINTAK 180
Score = 49.1 bits (118), Expect = 6e-07
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ +++++ K F TIG F +N+ ++KLQ+
Sbjct: 31 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQI 74
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 189 bits (483), Expect = 5e-57
Identities = 63/153 (41%), Positives = 94/153 (61%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKT +V R+ +F TIG F + + KVKLQ+WDTAGQERFRS+ Y
Sbjct: 36 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSY 95
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR+ANA +L +DIT SF + W++E+++ ++ +VGNK DL REV+++ A
Sbjct: 96 YRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAE 155
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
+S++ Y ETSA + +E +FL+++ LI
Sbjct: 156 EFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 188
Score = 49.2 bits (118), Expect = 7e-07
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKT +V R+ +F TIG F + + KVKLQ+
Sbjct: 36 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 79
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 186 bits (475), Expect = 7e-56
Identities = 53/153 (34%), Positives = 88/153 (57%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ +++R+ ++ TIG F I + +KLQ+WDTAGQERFR++ Y
Sbjct: 43 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 102
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A+ ++V+D+T SF +K W++E+ R E + +VGNK DL + + V+ A
Sbjct: 103 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 162
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
++ S+G + ETSA +E F+ ++ +
Sbjct: 163 EFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195
Score = 48.4 bits (116), Expect = 1e-06
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ +++R+ ++ TIG F I + +KLQ+
Sbjct: 43 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 86
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 186 bits (474), Expect = 1e-55
Identities = 60/154 (38%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +V R+ FS TIG F + + +VKLQ+WDTAGQERFR++ Y
Sbjct: 39 SVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSY 98
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR+AN A+L +DIT+ SF ++ W++++++ +V ++GNK+DL REV+ EA
Sbjct: 99 YRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQ 158
Query: 236 HYSKSIGG-TYYETSALQDQGIEDVFLNVSKGLI 268
++ ETSA +E+ FL V+ LI
Sbjct: 159 SLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192
Score = 48.8 bits (117), Expect = 1e-06
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKT +V R+ FS TIG F + + +VKLQ+
Sbjct: 39 SVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 82
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 185 bits (471), Expect = 3e-55
Identities = 53/153 (34%), Positives = 90/153 (58%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ +++R+ +++ TIG F + + VKLQ+WDTAGQERFR++ Y
Sbjct: 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 77
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR ++ ++V+D+T SF +K W++E+ R ++ +VGNK DL+ R V + A
Sbjct: 78 YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAK 137
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
++ + + ETSAL +ED FL +++ +
Sbjct: 138 EFADANKMPFLETSALDSTNVEDAFLTMARQIK 170
Score = 47.7 bits (114), Expect = 2e-06
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQ 382
GVGK+ +++R+ +++ TIG F + + VKLQ
Sbjct: 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 183 bits (468), Expect = 6e-55
Identities = 53/153 (34%), Positives = 84/153 (54%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKTS + RY F+ T+G F + + ++KLQ+WDTAGQER+R++ Y
Sbjct: 32 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAY 91
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A LL++DI SFAA++ W ++K + + +VGNK DLE R V E+
Sbjct: 92 YRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGR 151
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
+ +G ++E SA ++ ++ VF + +
Sbjct: 152 RLADDLGFEFFEASAKENINVKQVFERLVDVIC 184
Score = 47.2 bits (113), Expect = 3e-06
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS + RY F+ T+G F + + ++KLQ+
Sbjct: 32 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQI 75
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 183 bits (468), Expect = 6e-55
Identities = 53/150 (35%), Positives = 87/150 (58%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ +++R+ ++ TIG F I + +KLQ+WDTAGQERFR++ Y
Sbjct: 26 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 85
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A+ ++V+D+T SF +K W++E+ R E + +VGNK DL + + V+ A
Sbjct: 86 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 145
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
++ S+G + ETSA +E F+ ++
Sbjct: 146 EFADSLGIPFLETSAKNATNVEQSFMTMAA 175
Score = 47.2 bits (113), Expect = 3e-06
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ +++R+ ++ TIG F I + +KLQ+
Sbjct: 26 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 183 bits (467), Expect = 8e-55
Identities = 52/153 (33%), Positives = 86/153 (56%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKT ++ R+ F+ TIG F I + ++KLQ+WDTAGQERFR++ Y
Sbjct: 18 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 77
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A +LV+DIT SF I+ W++ ++ + + ++GNK D+ R+V++E
Sbjct: 78 YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGE 137
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
+ G + ETSA + +E+ F +++ +
Sbjct: 138 KLALDYGIKFMETSAKANINVENAFFTLARDIK 170
Score = 47.6 bits (114), Expect = 2e-06
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKT ++ R+ F+ TIG F I + ++KLQ+
Sbjct: 18 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 61
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 183 bits (466), Expect = 1e-54
Identities = 54/154 (35%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKTS++ R+ F T+G F + + K++LQ+WDTAGQERF S+ Y
Sbjct: 36 GVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAY 95
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR+A +LV+DIT+ +F + W+K + + E L +VGNK D E+ RE+ R++
Sbjct: 96 YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGE 155
Query: 236 HYSKSIGG-TYYETSALQDQGIEDVFLNVSKGLI 268
+++ I G + E SA + ++++FL + ++
Sbjct: 156 KFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189
Score = 48.0 bits (115), Expect = 2e-06
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKTS++ R+ F T+G F + + K++LQ+
Sbjct: 36 GVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQI 79
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 183 bits (466), Expect = 1e-54
Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 2/154 (1%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S+++R+ F ++ TIG F I+V NK KL +WDTAGQERFR++ P Y
Sbjct: 25 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 84
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCV-VGNKTDLESSREVNREEA 234
YR A +LV+D+T+ +F + W+ EL+ ++ + VGNK D E +REV+R E
Sbjct: 85 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEG 143
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
+++ + E SA G++ F + + +I
Sbjct: 144 LKFARKHSMLFIEASAKTCDGVQCAFEELVEKII 177
Score = 49.9 bits (120), Expect = 3e-07
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+S+++R+ F ++ TIG F I+V NK KL +
Sbjct: 25 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 68
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 182 bits (464), Expect = 2e-54
Identities = 60/154 (38%), Positives = 87/154 (56%), Gaps = 1/154 (0%)
Query: 116 GVGKTSMVVRYIGKMF-SHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPM 174
GVGKT ++VR+ F + T+G F ++V KVKLQ+WDTAGQERFRS+
Sbjct: 20 GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHA 79
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEA 234
YYR+A+A LL++D+T SF I+ W+ E+ + L ++GNK D R V RE+
Sbjct: 80 YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDG 139
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
+K G + ETSA ++ F ++K L
Sbjct: 140 EKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 173
Score = 45.6 bits (109), Expect = 9e-06
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 340 GVGKTSMVVRYIGKMF-SHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKT ++VR+ F + T+G F ++V KVKLQ+
Sbjct: 20 GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 64
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 182 bits (464), Expect = 3e-54
Identities = 52/153 (33%), Positives = 83/153 (54%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKTS + RY F+ T+G F + E +VKLQ+WDTAGQER+R++ Y
Sbjct: 33 SVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAY 92
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A +L++DIT SF A++ W ++K + + +VGNK D+E R V E+
Sbjct: 93 YRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQ 152
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
++ +G ++E SA ++ + F + +
Sbjct: 153 LLAEQLGFDFFEASAKENISVRQAFERLVDAIC 185
Score = 47.2 bits (113), Expect = 3e-06
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS + RY F+ T+G F + E +VKLQ+
Sbjct: 33 SVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQI 76
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 182 bits (465), Expect = 3e-54
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 7/181 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKTS + RY F+ T+G F I + ++KLQ+WDTAG ER+R++ Y
Sbjct: 18 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAY 77
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A +L++DIT SF A++ W ++K + + +VGNK D+E R V+ E
Sbjct: 78 YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGR 137
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQESLHTSSLRVYDSDNITSANPRG 295
+ +G ++E SA + ++ F + + S + +D + +G
Sbjct: 138 QLADHLGFEFFEASAKDNINVKQTFERLVDVI-------CEKMSESLDTADPAVTGAKQG 190
Query: 296 V 296
Sbjct: 191 P 191
Score = 46.9 bits (112), Expect = 4e-06
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS + RY F+ T+G F I + ++KLQ+
Sbjct: 18 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 181 bits (462), Expect = 3e-54
Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 6/158 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S++ RY+ F + TIG F + V + V +Q+WDTAGQERFRS+ +
Sbjct: 17 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPF 76
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVD----EPLVLCVVGNKTDLESSREVNR 231
YR ++ LL F + SF + W KE D E ++GNK D+ R+V+
Sbjct: 77 YRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVST 135
Query: 232 EEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSKGLI 268
EEA + + G Y+ETSA + F + ++
Sbjct: 136 EEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173
Score = 53.3 bits (129), Expect = 2e-08
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQ 382
GVGK+S++ RY+ F + TIG F + V + V +Q
Sbjct: 17 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ 59
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 182 bits (464), Expect = 4e-54
Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 6/184 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGKTS++ +Y+ K FS+ TIGA F T ++ V + V +Q+WDTAGQERF+S+ +
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAF 77
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVD----EPLVLCVVGNKTDLESSREVNR 231
YR A+ +LVFD+T ++F + +W E E V+GNK DLE+ + +
Sbjct: 78 YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATK 137
Query: 232 EEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLICLSQESLHTSSLRVYDSDNITSA 291
Y+ETSA + +E F +++ L QE+ + +
Sbjct: 138 RAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA--LKQETEVELYNEFPEPIKLDKN 195
Query: 292 NPRG 295
Sbjct: 196 ERAK 199
Score = 52.7 bits (127), Expect = 5e-08
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKTS++ +Y+ K FS+ TIGA F T ++ V + V +Q+
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 181 bits (461), Expect = 5e-54
Identities = 55/153 (35%), Positives = 94/153 (61%), Gaps = 1/153 (0%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S+++R+ FS TIG F + + KVKLQ+WDTAGQERFR++ Y
Sbjct: 19 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTY 78
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR + ++V+D+T SF +K W+ E+ +N D+ + +VGNK D + V E+A+
Sbjct: 79 YRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRI-LVGNKNDDPERKVVETEDAY 137
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
++ +G +ETSA ++ +E++F +++ ++
Sbjct: 138 KFAGQMGIQLFETSAKENVNVEEMFNCITELVL 170
Score = 47.6 bits (114), Expect = 2e-06
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+S+++R+ FS TIG F + + KVKLQ+
Sbjct: 19 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQI 62
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 181 bits (461), Expect = 8e-54
Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S ++R F +IS T+G F + V + LQ+WDTAGQERFRS+A Y
Sbjct: 38 AVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSY 97
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDL------ESSREV 229
+R A+ LL++D+T SF I+ WV ++ E + + +VGNK D+ E + V
Sbjct: 98 FRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCV 157
Query: 230 NREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
+ + G + ETSA I + L++++
Sbjct: 158 PGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAR 193
Score = 49.6 bits (119), Expect = 6e-07
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S ++R F +IS T+G F + V + LQL
Sbjct: 38 AVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQL 81
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 179 bits (457), Expect = 1e-53
Identities = 57/153 (37%), Positives = 92/153 (60%), Gaps = 1/153 (0%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ ++VR++ F+ TIG F +++ KVKLQ+WDTAGQERFR++ Y
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY 72
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A +LV+DIT +F IK W K + + ++ L +VGNK+D+E +R V ++
Sbjct: 73 YRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGE 131
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
+K +G + E+SA D + ++F ++K +
Sbjct: 132 ALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 164
Score = 48.3 bits (116), Expect = 9e-07
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ ++VR++ F+ TIG F +++ KVKLQ+
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQI 56
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 181 bits (462), Expect = 1e-53
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 5/154 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GKT+ V R++ F T+G + +K VWDTAGQE+F + Y
Sbjct: 25 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 84
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE-PLVLCVVGNKTDLESSREVNREEA 234
Y A A+++FD+T ++ + W ++L R + P+VLC GNK D++ + +
Sbjct: 85 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC--GNKVDIKDRKVKAKSIV 142
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
FH K++ YY+ SA + E FL +++ LI
Sbjct: 143 FHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 174
Score = 50.0 bits (120), Expect = 5e-07
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
G GKT+ V R++ F T+G + +K +
Sbjct: 25 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNV 68
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 180 bits (458), Expect = 1e-53
Identities = 58/160 (36%), Positives = 90/160 (56%), Gaps = 7/160 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENK-VKLQVWDTAGQERFRSMAPM 174
GVGKTS++ RY+ +S TIGA F T ++ V +K +QVWDTAGQERF+S+
Sbjct: 18 GVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVA 77
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD----EPLVLCVVGNKTDLESS-REV 229
+YR A+ +LV+D+T SF IK+W E + + E ++GNK D E S + V
Sbjct: 78 FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIV 137
Query: 230 NREEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSKGLI 268
+ + A +KS+G + TSA ++ F +++ +
Sbjct: 138 SEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177
Score = 49.5 bits (119), Expect = 4e-07
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENK-VKLQL 383
GVGKTS++ RY+ +S TIGA F T ++ V +K +Q+
Sbjct: 18 GVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 62
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 177 bits (452), Expect = 1e-52
Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 5/155 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFR-SMAPM 174
VGKT + R+ F TIG F +++ ++K+Q+WDTAGQERFR SM
Sbjct: 30 NVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQH 89
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCV-VGNKTDLESSREVNREE 233
YYRN +A + V+D+T SF ++ W++E K+++ + + VGNK DL S+ +V +
Sbjct: 90 YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDL 149
Query: 234 AFHYSKSIGGTYYETSALQD---QGIEDVFLNVSK 265
A ++ + +ETSA +E +F+ ++
Sbjct: 150 AQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAH 184
Score = 49.1 bits (118), Expect = 5e-07
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKT + R+ F TIG F +++ ++K+QL
Sbjct: 30 NVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQL 73
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 177 bits (451), Expect = 3e-52
Identities = 56/153 (36%), Positives = 92/153 (60%), Gaps = 1/153 (0%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+ ++VR++ F+ TIG F +++ KVKLQ+WDTAGQERFR++ Y
Sbjct: 30 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 89
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAF 235
YR A +LV+D+T +F IK W K + + ++ L +VGNK+D+E +R V ++
Sbjct: 90 YRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGE 148
Query: 236 HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
+K +G + E+SA D + ++F ++K +
Sbjct: 149 ALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 181
Score = 47.3 bits (113), Expect = 4e-06
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+ ++VR++ F+ TIG F +++ KVKLQL
Sbjct: 30 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQL 73
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 176 bits (449), Expect = 7e-52
Identities = 57/161 (35%), Positives = 81/161 (50%), Gaps = 11/161 (6%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINV----------GENKVKLQVWDTAGQ 165
GVGKT+ + RY F+ T+G F ++ KV LQ+WDTAGQ
Sbjct: 35 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94
Query: 166 ERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCV-VGNKTDLE 224
ERFRS+ ++R+A LL+FD+T SF ++ W+ +L+ N V +GNK DL
Sbjct: 95 ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154
Query: 225 SSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
REVN +A + G Y+ETSA Q +E +
Sbjct: 155 DQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLD 195
Score = 42.7 bits (101), Expect = 1e-04
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 10/54 (18%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINV----------GENKVKLQL 383
GVGKT+ + RY F+ T+G F ++ KV LQL
Sbjct: 35 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQL 88
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 175 bits (447), Expect = 1e-51
Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 116 GVGKTSMVVRYIGKM--FSHHISPTIGASFFTAKINVGENKVKLQVW--DTAGQERFRSM 171
VGK++++ + K F + T G A + + + V ++++ DTAG + ++
Sbjct: 30 TVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQ 89
Query: 172 APMYYRNANAALLVFDITQYHSFAAIKTWVKELKR---NVDEPLVLCVVGNKTDLESSR- 227
Y+ A+LVFD++ SF + K W + LK + + PL +V NKTDL R
Sbjct: 90 ISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRH 149
Query: 228 EVNREEAFHYSKSIGGTYYETSALQD-QGIEDVFLNVSK 265
+V + A ++ + +++ SA + + FL+++
Sbjct: 150 QVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIAT 188
Score = 49.2 bits (118), Expect = 8e-07
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 340 GVGKTSMVVRYIGKM--FSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK++++ + K F + T G A + + + V ++L
Sbjct: 30 TVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVEL 75
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 172 bits (438), Expect = 6e-51
Identities = 66/155 (42%), Positives = 101/155 (65%), Gaps = 3/155 (1%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+V+R++ F+ + PTIGA+F T ++ + E+ VK ++WDTAGQERF S+AP Y
Sbjct: 13 AVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXY 72
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTD---LESSREVNRE 232
YRNA AAL+V+D+T+ SF + WVKEL + +++ +VGNK D R+V RE
Sbjct: 73 YRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVARE 132
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGL 267
E ++ G ++ETSA + + DVFL + + +
Sbjct: 133 EGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
Score = 56.7 bits (137), Expect = 1e-09
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+V+R++ F+ + PTIGA+F T ++ + E+ VK ++
Sbjct: 13 AVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEI 56
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 173 bits (440), Expect = 1e-50
Identities = 46/151 (30%), Positives = 82/151 (54%), Gaps = 6/151 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKTS+ +++ FS PT+ ++ + + +G+++ L + DTAGQ+ + + +
Sbjct: 34 CVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSF 92
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE---PLVLCVVGNKTDLESSREVNRE 232
+ +LV+ +T HSF I++ ++L + P+VL VGNK DL REV
Sbjct: 93 IIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVL--VGNKADLSPEREVQAV 150
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNV 263
E ++S G T+ E+SA ++Q + +F V
Sbjct: 151 EGKKLAESWGATFMESSARENQLTQGIFTKV 181
Score = 41.8 bits (99), Expect = 2e-04
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKTS+ +++ FS PT+ + ++ + +G+++ L L
Sbjct: 34 CVGKTSLAHQFVEGEFSEGYDPTVENT-YSKIVTLGKDEFHLHL 76
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 173 bits (439), Expect = 1e-50
Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 40/187 (21%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVK------------------- 156
VGK+S+V+R F + + TIGASF T +N+ + +K
Sbjct: 17 SVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNN 76
Query: 157 ------------------LQVWDTAGQERFRSMAPMYYRNANAALLVFDITQYHSFAAIK 198
+WDTAGQER+ S+ P+YYR A A++VFDI+ ++ K
Sbjct: 77 VIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK 136
Query: 199 TWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIED 258
TWV +LK + + ++ +V NK D +V+ E Y++ + +TSA I++
Sbjct: 137 TWVNQLKISSN--YIIILVANKIDKN-KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKN 193
Query: 259 VFLNVSK 265
+F +++
Sbjct: 194 IFYMLAE 200
Score = 48.7 bits (116), Expect = 1e-06
Identities = 18/73 (24%), Positives = 30/73 (41%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLRTGLKVSKIPVPTRNR 399
VGK+S+V+R F + + TIGASF T +N+ + +K + + N
Sbjct: 17 SVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNN 76
Query: 400 EGATTGRITEPDT 412
T +
Sbjct: 77 VIITNQHNNYNEN 89
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 172 bits (437), Expect = 2e-50
Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 11/161 (6%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGEN----------KVKLQVWDTAGQ 165
GVGKTS++ +Y F+ T+G F ++ N ++ LQ+WDTAG
Sbjct: 21 GVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL 80
Query: 166 ERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCV-VGNKTDLE 224
ERFRS+ ++R+A LL+FD+T SF ++ W+ +L+ + V GNK+DLE
Sbjct: 81 ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140
Query: 225 SSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
R V EEA ++ G Y+ETSA I +
Sbjct: 141 DQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLD 181
Score = 40.3 bits (95), Expect = 6e-04
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 10/54 (18%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGEN----------KVKLQL 383
GVGKTS++ +Y F+ T+G F ++ N ++ LQL
Sbjct: 21 GVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQL 74
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 168 bits (429), Expect = 2e-49
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 6/152 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRS-MAPM 174
GVGK+++ + G H + +I V + +V L V+D Q +
Sbjct: 12 GVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDH 71
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE---PLVLCVVGNKTDLESSREVNR 231
+ +A L+VF +T SF+ + + L+ P++L VGNK+DL SREV+
Sbjct: 72 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL--VGNKSDLARSREVSL 129
Query: 232 EEAFHYSKSIGGTYYETSALQDQGIEDVFLNV 263
EE H + ++ + ETSA ++F
Sbjct: 130 EEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161
Score = 43.3 bits (103), Expect = 5e-05
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+++ + G H + +I V + +V L +
Sbjct: 12 GVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIV 55
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 168 bits (429), Expect = 2e-49
Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 6/153 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGK+S+ ++++ F PTI +F T I V + LQ+ DTAGQ+ + Y
Sbjct: 16 SVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTY 74
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE---PLVLCVVGNKTDLESSREVNRE 232
+ N +LV+ +T SF IK +L V + P++L VGNK DL R ++ E
Sbjct: 75 SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIML--VGNKKDLHMERVISYE 132
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
E ++S + E+SA ++Q DVF +
Sbjct: 133 EGKALAESWNAAFLESSAKENQTAVDVFRRIIL 165
Score = 40.6 bits (96), Expect = 4e-04
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGK+S+ ++++ F PTI + FT I V + LQL
Sbjct: 16 SVGKSSLTIQFVEGQFVDSYDPTIENT-FTKLITVNGQEYHLQL 58
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 168 bits (429), Expect = 3e-49
Identities = 49/151 (32%), Positives = 86/151 (56%), Gaps = 6/151 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ ++++ F PT S+ K+ + +V++ + DTAGQE + ++ Y
Sbjct: 28 GVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNY 86
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE---PLVLCVVGNKTDLESSREVNRE 232
+R+ L VF IT+ SFAA + +++ R ++ P +L VGNK+DLE R+V+ E
Sbjct: 87 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL--VGNKSDLEDKRQVSVE 144
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNV 263
EA + ++ Y ETSA ++ VF ++
Sbjct: 145 EAKNRAEQWNVNYVETSAKTRANVDKVFFDL 175
Score = 40.2 bits (95), Expect = 7e-04
Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+++ ++++ F PT S + K+ + +V++ +
Sbjct: 28 GVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEEVQIDI 70
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 167 bits (425), Expect = 5e-49
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 7/151 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ + G G ++ I V + L V+D Q+ R +
Sbjct: 12 GVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHC 69
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE---PLVLCVVGNKTDLESSREVNRE 232
+A ++V+ +T SF +L+R P++L VGNK+DL SREV+ +
Sbjct: 70 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIIL--VGNKSDLVRSREVSVD 127
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNV 263
E + + ETSA ++ +F V
Sbjct: 128 EGRACAVVFDCKFIETSAALHHNVQALFEGV 158
Score = 39.8 bits (94), Expect = 7e-04
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+++ + G G + + I V + L +
Sbjct: 12 GVGKSALARIFGGVEDGPEA-EAAGHT-YDRSIVVDGEEASLMV 53
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 167 bits (426), Expect = 5e-49
Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 6/153 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ +++I F PTI +T +V +L + DTAGQE F +M Y
Sbjct: 19 GVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQY 77
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE---PLVLCVVGNKTDLESSREVNRE 232
R + LLVF I SF + ++ R D P+VL VGNK DLES R+V R
Sbjct: 78 MRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVL--VGNKADLESQRQVPRS 135
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
EA + S Y+E SA +++ F + +
Sbjct: 136 EASAFGASHHVAYFEASAKLRLNVDEAFEQLVR 168
Score = 41.0 bits (97), Expect = 3e-04
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+++ +++I F PTI +T +V +L +
Sbjct: 19 GVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDI 61
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 167 bits (426), Expect = 8e-49
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 6/152 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRS-MAPM 174
GVGK+++ + G P + +I V + +V L V+D Q +
Sbjct: 33 GVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDH 92
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE---PLVLCVVGNKTDLESSREVNR 231
+ +A L+VF +T SF+ + + L+ P++L VGNK+DL SREV+
Sbjct: 93 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL--VGNKSDLARSREVSL 150
Query: 232 EEAFHYSKSIGGTYYETSALQDQGIEDVFLNV 263
EE H + ++ + ETSA ++F
Sbjct: 151 EEGRHLAGTLSCKHIETSAALHHNTRELFEGA 182
Score = 43.4 bits (103), Expect = 6e-05
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+++ + G P + +I V + +V L +
Sbjct: 33 GVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVV 76
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 166 bits (424), Expect = 8e-49
Identities = 49/151 (32%), Positives = 85/151 (56%), Gaps = 6/151 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ ++++ F PT S+ K+ + +V++ + DTAGQE + ++ Y
Sbjct: 14 GVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNY 72
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE---PLVLCVVGNKTDLESSREVNRE 232
+R+ L VF IT+ SFAA + +++ R ++ P +L VGNK+DLE R+V+ E
Sbjct: 73 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL--VGNKSDLEDKRQVSVE 130
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNV 263
EA + + Y ETSA ++ VF ++
Sbjct: 131 EAKNRADQWNVNYVETSAKTRANVDKVFFDL 161
Score = 39.4 bits (93), Expect = 8e-04
Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+++ ++++ F PT S + K+ + +V++ +
Sbjct: 14 GVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEEVQIDI 56
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 165 bits (421), Expect = 6e-48
Identities = 49/151 (32%), Positives = 86/151 (56%), Gaps = 6/151 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ ++++ F PT S+ K+ + +V++ + DTAGQE + ++ Y
Sbjct: 24 GVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNY 82
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE---PLVLCVVGNKTDLESSREVNRE 232
+R+ L VF IT+ SFAA + +++ R ++ P +L VGNK+DLE R+V+ E
Sbjct: 83 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL--VGNKSDLEDKRQVSVE 140
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNV 263
EA + ++ Y ETSA ++ VF ++
Sbjct: 141 EAKNRAEQWNVNYVETSAKTRANVDKVFFDL 171
Score = 40.3 bits (95), Expect = 8e-04
Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+++ ++++ F PT S + K+ + +V++ +
Sbjct: 24 GVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEEVQIDI 66
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 164 bits (417), Expect = 8e-48
Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 6/151 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ V+++ F PTI F+ +I V + L++ DTAG E+F SM +Y
Sbjct: 13 GVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLY 71
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE---PLVLCVVGNKTDLESSREVNRE 232
+N +LV+ + SF IK ++ R P++L VGNK DLES REV+
Sbjct: 72 IKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVIL--VGNKVDLESEREVSSS 129
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNV 263
E ++ G + ETSA ++++F +
Sbjct: 130 EGRALAEEWGCPFMETSAKSKTMVDELFAEI 160
Score = 39.8 bits (94), Expect = 7e-04
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+++ V+++ F PTI F+ +I V + L++
Sbjct: 13 GVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEI 55
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 163 bits (416), Expect = 1e-47
Identities = 43/152 (28%), Positives = 78/152 (51%), Gaps = 7/152 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S+V+R++ F PT+ ++ I+ ++ LQ+ DT G +F +M +
Sbjct: 13 GVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLS 71
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE----PLVLCVVGNKTDLESSREVNR 231
+A +LV+ IT S +K +++ + P++L VGNK D SREV
Sbjct: 72 ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIML--VGNKCDESPSREVQS 129
Query: 232 EEAFHYSKSIGGTYYETSALQDQGIEDVFLNV 263
EA +++ + ETSA + ++++F +
Sbjct: 130 SEAEALARTWKCAFMETSAKLNHNVKELFQEL 161
Score = 41.0 bits (97), Expect = 3e-04
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+S+V+R++ F PT+ + + I+ ++ LQ+
Sbjct: 13 GVGKSSLVLRFVKGTFRESYIPTVEDT-YRQVISCDKSICTLQI 55
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 163 bits (415), Expect = 2e-47
Identities = 40/153 (26%), Positives = 61/153 (39%), Gaps = 8/153 (5%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRS--MAP 173
GVGKTS+ + GK + + V L V DT E+
Sbjct: 14 GVGKTSLASLFAGKQERDLHEQLG-EDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQE 72
Query: 174 MYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE---PLVLCVVGNKTDLESSREVN 230
+ +A ++V+ I SF + +L+R P++L VGNK DL REV+
Sbjct: 73 SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIIL--VGNKADLARCREVS 130
Query: 231 REEAFHYSKSIGGTYYETSALQDQGIEDVFLNV 263
EE + + ETSA + ++F V
Sbjct: 131 VEEGRACAVVFDCKFIETSATLQHNVAELFEGV 163
Score = 41.8 bits (99), Expect = 2e-04
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGKTS+ + GK + + V L +
Sbjct: 14 GVGKTSLASLFAGKQERDLHEQLG-EDVYERTLTVDGEDTTLVV 56
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 161 bits (411), Expect = 7e-47
Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 7/152 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ +++ K+F PTI + + L V DTAGQE F +M Y
Sbjct: 28 GVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQY 86
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE---PLVLCVVGNKTDLESSREVNRE 232
R + L+V+ +T SF + + + + R D P++L V NK DL R+V R+
Sbjct: 87 MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL--VANKVDLMHLRKVTRD 144
Query: 233 EAFHYSKSIGGTYYETSALQDQ-GIEDVFLNV 263
+ + Y ETSA ++ F ++
Sbjct: 145 QGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 176
Score = 40.6 bits (96), Expect = 4e-04
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+++ +++ K+F PTI + + L +
Sbjct: 28 GVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDV 70
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 160 bits (408), Expect = 1e-46
Identities = 54/151 (35%), Positives = 78/151 (51%), Gaps = 7/151 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ ++ I F PTI S+ ++ + L + DTAGQE + +M Y
Sbjct: 13 GVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE---PLVLCVVGNKTDLESSREVNRE 232
R L VF I SF I + +++KR D P+VL VGNK+DL +R V
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--VGNKSDLA-ARTVESR 128
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNV 263
+A ++S G Y ETSA QG+ED F +
Sbjct: 129 QAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Score = 40.9 bits (97), Expect = 3e-04
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+++ ++ I F PTI S + ++ + L +
Sbjct: 13 GVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDI 55
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 160 bits (408), Expect = 3e-46
Identities = 55/148 (37%), Positives = 79/148 (53%), Gaps = 7/148 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ ++ I F PTI S+ ++ + L + DTAGQE + +M Y
Sbjct: 31 GVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQY 89
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE---PLVLCVVGNKTDLESSREVNRE 232
R L VF I SFA I + +++KR D P+VL VGNK DL +R V+ +
Sbjct: 90 MRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVL--VGNKCDLP-TRTVDTK 146
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVF 260
+A +KS G + ETSA QG+ED F
Sbjct: 147 QAHELAKSYGIPFIETSAKTRQGVEDAF 174
Score = 40.7 bits (96), Expect = 4e-04
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQ 382
GVGK+++ ++ I F PTI S + ++ + L
Sbjct: 31 GVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLD 72
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 160 bits (406), Expect = 4e-46
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 7/153 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ ++ I F PTI S+ ++ + L + DTAGQE + +M Y
Sbjct: 14 GVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQY 72
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE---PLVLCVVGNKTDLESSREVNRE 232
R L VF I SF I + +++KR D P+VL VGNK DL SR V+ +
Sbjct: 73 MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVL--VGNKCDLP-SRTVDTK 129
Query: 233 EAFHYSKSIGGTYYETSALQDQGIEDVFLNVSK 265
+A ++S G + ETSA QG++D F + +
Sbjct: 130 QAQDLARSYGIPFIETSAKTRQGVDDAFYTLVR 162
Score = 40.3 bits (95), Expect = 6e-04
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+++ ++ I F PTI S + ++ + L +
Sbjct: 14 GVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDI 56
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 159 bits (405), Expect = 8e-46
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 8/152 (5%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++VVR++ K F PT+ +++ + + + V +++ DTAGQE +
Sbjct: 38 GVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQEDTI-QREGH 95
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE---PLVLCVVGNKTDLESSREVNRE 232
R +LV+DIT SF + L L+L VGNK DL+ SR+V+ E
Sbjct: 96 MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLIL--VGNKADLDHSRQVSTE 153
Query: 233 EAFHYSKSIGGTYYETSALQDQG-IEDVFLNV 263
E + + +YE SA +G I ++F +
Sbjct: 154 EGEKLATELACAFYECSACTGEGNITEIFYEL 185
Score = 41.8 bits (99), Expect = 2e-04
Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQ 382
GVGK+++VVR++ K F PT+ ++ + + + + V ++
Sbjct: 38 GVGKSALVVRFLTKRFIWEYDPTLEST-YRHQATIDDEVVSME 79
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 157 bits (400), Expect = 4e-45
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 6/152 (3%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GK+++ V+++ K F P + ++ +++ V V L+V DTA + R+ Y
Sbjct: 31 GAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERY 88
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNV---DEPLVLCVVGNKTDLESSREVNRE 232
A+A L+V+ + SF + ++++ L + + ++GNK D+ R+V +
Sbjct: 89 LNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKA 148
Query: 233 EAFHYSKSIGGTYYETSALQD-QGIEDVFLNV 263
E + G ++E SA D + ++ VF
Sbjct: 149 EGVALAGRFGCLFFEVSACLDFEHVQHVFHEA 180
Score = 40.3 bits (95), Expect = 7e-04
Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
G GK+++ V+++ K F P + + ++++ V V L++
Sbjct: 31 GAGKSALTVKFLTKRFISEYDPNLEDT-YSSEETVDHQPVHLRV 73
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 154 bits (393), Expect = 2e-44
Identities = 44/149 (29%), Positives = 80/149 (53%), Gaps = 7/149 (4%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+++ V+++ +F PTI S+ ++ V + L++ DTAG E+F +M +Y
Sbjct: 13 GVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLY 71
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE---PLVLCVVGNKTDLESSREVNRE 232
+N LV+ IT +F ++ +++ R D P++L VGNK DLE R V +E
Sbjct: 72 MKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMIL--VGNKCDLEDERVVGKE 129
Query: 233 EAFHYSKSIGG-TYYETSALQDQGIEDVF 260
+ + ++ + E+SA + ++F
Sbjct: 130 QGQNLARQWCNCAFLESSAKSKINVNEIF 158
Score = 37.9 bits (89), Expect = 0.003
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQ 382
GVGK+++ V+++ +F PTI S + ++ V + L+
Sbjct: 13 GVGKSALTVQFVQGIFVEKYDPTIEDS-YRKQVEVDCQQCMLE 54
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 155 bits (394), Expect = 4e-44
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 8/149 (5%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GVGK+S+V+R++ F PTI ++ I+ ++ LQ+ DT G +F +M +
Sbjct: 18 GVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLS 76
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE----PLVLCVVGNKTDLESSREVNR 231
+A +LVF +T S + K + + P++L VGNK D REV+
Sbjct: 77 ISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVML--VGNKCDET-QREVDT 133
Query: 232 EEAFHYSKSIGGTYYETSALQDQGIEDVF 260
EA ++ + ETSA + ++++F
Sbjct: 134 REAQAVAQEWKCAFMETSAKMNYNVKELF 162
Score = 41.1 bits (97), Expect = 4e-04
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+S+V+R++ F PTI + + I+ ++ LQ+
Sbjct: 18 GVGKSSLVLRFVKGTFRDTYIPTIEDT-YRQVISCDKSVCTLQI 60
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 153 bits (389), Expect = 1e-43
Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 15/156 (9%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GK+++V RY+ + SP G F +I V L + D G + +
Sbjct: 30 SSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----F 82
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE---PLVLCVVGNKTDL--ESSREVN 230
+A + VF + SF + + L + P+VL VG + + + R ++
Sbjct: 83 AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVL--VGTQDAISAANPRVID 140
Query: 231 REEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSK 265
A S + TYYET A +E VF +V++
Sbjct: 141 DSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQ 176
Score = 44.1 bits (105), Expect = 3e-05
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384
GK+++V RY+ + SP G F +I V L +R
Sbjct: 30 SSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIR 72
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 151 bits (383), Expect = 2e-42
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 9/154 (5%)
Query: 116 GVGKTSMVVRYIG--KMFSHHISPTIGASFFTAKINV-GE--NKVKLQVWDTAGQERFRS 170
GVGK+++ + G + + V GE + L +W+ G+ +
Sbjct: 47 GVGKSTLANIFAGVHDSMDSDCEVLG-EDTYERTLMVDGESATIILLDMWENKGENEW-- 103
Query: 171 MAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREV 229
+ + +A L+V+ IT SF +L+R E + + +VGNK+DL REV
Sbjct: 104 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREV 163
Query: 230 NREEAFHYSKSIGGTYYETSALQDQGIEDVFLNV 263
+ E + + ETSA ++++F +
Sbjct: 164 SVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 197
Score = 33.1 bits (76), Expect = 0.16
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 340 GVGKTSMVVRYIG--KMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GVGK+++ + G + + V + L
Sbjct: 47 GVGKSTLANIFAGVHDSMDSDCEVLG-EDTYERTLMVDGESATIIL 91
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 149 bits (379), Expect = 2e-42
Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 13/156 (8%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GK+S++ R++ + T + ++ V + + + AG + +
Sbjct: 17 RSGKSSLIHRFLTGSYQVLE-KTESE-QYKKEMLVDGQTHLVLIREEAGAPDAK-----F 69
Query: 176 YRNANAALLVFDITQYHSFAAIKTWVKELKR-----NVDEPLVLCVVGNKTDLESSREVN 230
A+A + VF + +SF A+ +L L L ++ S R V
Sbjct: 70 SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVG 129
Query: 231 REEAFHYSKSIGG-TYYETSALQDQGIEDVFLNVSK 265
A + +YYET A ++ VF V++
Sbjct: 130 DARARALXADMKRCSYYETXATYGLNVDRVFQEVAQ 165
Score = 44.5 bits (106), Expect = 2e-05
Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQLR 384
GK+S++ R++ + T + ++ V + +R
Sbjct: 17 RSGKSSLIHRFLTGSYQVLE-KTESE-QYKKEMLVDGQTHLVLIR 59
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 149 bits (377), Expect = 4e-42
Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 15/164 (9%)
Query: 116 GVGKTSMVVRYIGKMFSHHIS--PTIGASFFTAKINVGENK---VKLQVWDTAGQERFRS 170
G GKT+++ + + S T+G I + + + + L VWD AG+E F S
Sbjct: 12 GSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS 71
Query: 171 MAPMYYRNANAALLVFDITQYHS-FAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSRE- 228
P + L V+D+++ + A+K W+ +K V+ +VG D+ ++
Sbjct: 72 THPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVI-LVGTHLDVSDEKQR 130
Query: 229 --VNREEAFHYSKSIG-----GTYYETSALQDQGIEDVFLNVSK 265
+ G ++ + + + + +
Sbjct: 131 KACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIIN 174
Score = 41.6 bits (98), Expect = 2e-04
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 340 GVGKTSMVVRYIGKMFSHHIS--PTIGASFFTAKINVGENK---VKLQL 383
G GKT+++ + + S T+G I + + + + L +
Sbjct: 12 GSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNV 60
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 147 bits (373), Expect = 2e-41
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 9/154 (5%)
Query: 116 GVGKTSMVVRYIGKMFS--HHISPTIGASFFTAKINV-GE--NKVKLQVWDTAGQERFRS 170
GVGK+++ + G S + + V GE + L +W+ G+ +
Sbjct: 16 GVGKSTLANIFAGVHDSMDSDXEVLG-EDTYERTLMVDGESATIILLDMWENKGENEW-- 72
Query: 171 MAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVD-EPLVLCVVGNKTDLESSREV 229
+ + +A L+V+ IT SF +L+R E + + +VGNK+DL REV
Sbjct: 73 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREV 132
Query: 230 NREEAFHYSKSIGGTYYETSALQDQGIEDVFLNV 263
+ E + + ETSA ++++F +
Sbjct: 133 SVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGI 166
Score = 30.7 bits (70), Expect = 0.84
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 340 GVGKTSMVVRYIGKMFS--HHISPTIGASFFTAKINV-GE--NKVKLQ 382
GVGK+++ + G S + + V GE + L
Sbjct: 16 GVGKSTLANIFAGVHDSMDSDXEVLG-EDTYERTLMVDGESATIILLD 62
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 154 bits (391), Expect = 1e-40
Identities = 30/161 (18%), Positives = 66/161 (40%), Gaps = 12/161 (7%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKI--------NVGENKVKLQVWDTAGQER 167
GKTS++ + IG+ F S T G + T + + + WD GQE
Sbjct: 51 MAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEI 110
Query: 168 FRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSR 227
+ + ++ +L+ D + + W++ +++ + V+ VV NK D S
Sbjct: 111 MHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGGKSPVI-VVMNKIDENPSY 166
Query: 228 EVNREEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
+ +++ +I ++ S G+E + ++ ++
Sbjct: 167 NIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVL 207
Score = 32.3 bits (73), Expect = 0.46
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 8/52 (15%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKI--------NVGENKVKLQL 383
GKTS++ + IG+ F S T G + T + + +
Sbjct: 51 MAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHF 102
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 130 bits (329), Expect = 3e-35
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 8/150 (5%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ + PT+ +F + + + L +WDTAGQE + + P+
Sbjct: 33 AVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEEYDRLRPLS 91
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNVDE-PLVLCVVGNKTDL--ESSREVNR 231
Y +++ LL F + SF I T W E+K +D VL VG K DL + S +V +
Sbjct: 92 YADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVL--VGLKVDLRKDGSDDVTK 149
Query: 232 EEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
+E + +G Y E S++ G+ +VF
Sbjct: 150 QEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179
Score = 36.5 bits (85), Expect = 0.010
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKT +++ + PT+ + F+ + + L L
Sbjct: 33 AVGKTCLLLAFSKGEIPTAYVPTVFEN-FSHVMKYKNEEFILHL 75
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 127 bits (321), Expect = 3e-34
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 16/158 (10%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ +F +A + V V L +WDTAGQE + + P+
Sbjct: 18 AVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLS 76
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNVDE-PLVLCVVGNKTDLESSRE----- 228
YR A+ +L F + S+ + W+ ELK P+VL VG K DL ++
Sbjct: 77 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVL--VGTKLDLRDDKQFFIDH 134
Query: 229 -----VNREEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
+ + K IG Y E S+ + ++ VF
Sbjct: 135 PGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172
Score = 35.8 bits (83), Expect = 0.018
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKT +++ Y F PT+ + F+A + V V L L
Sbjct: 18 AVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGATVNLGL 60
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 125 bits (317), Expect = 2e-33
Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 18/158 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASF--FTAKINVGENKVKLQVWDTAGQERFRSMAP 173
VGKT M++ Y F PT+ F F+A + V V L +WDTAGQE + + P
Sbjct: 19 AVGKTCMLICYTSNKFPTDYIPTV---FDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRP 75
Query: 174 MYYRNANAALLVFDITQYHSFAAIKT-WVKELKRNVDE-PLVLCVVGNKTDL-------- 223
+ YR A+ +L F + S+ + W+ EL+R P+VL VG K DL
Sbjct: 76 LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVL--VGTKLDLRDDKGYLA 133
Query: 224 ESSREVNREEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
+ + + + K IG Y E S+ Q ++ VF
Sbjct: 134 DHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171
Score = 35.4 bits (82), Expect = 0.027
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASF--FTAKINVGENKVKLQL 383
VGKT M++ Y F PT+ F F+A + V V L L
Sbjct: 19 AVGKTCMLICYTSNKFPTDYIPTV---FDNFSANVAVDGQIVNLGL 61
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 124 bits (312), Expect = 1e-32
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
G GKTS+++ + F +PT+ + + V V L +WDTAGQ+ + + P++
Sbjct: 44 GCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLF 102
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNVDE-PLVLCVVGNKTDLESSRE----- 228
Y +A+ LL FD+T +SF I W E+ + P+++ VG KTDL +
Sbjct: 103 YPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIV--VGCKTDLRKDKSLVNKL 160
Query: 229 -------VNREEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
V ++S+G Y E SA + VF
Sbjct: 161 RRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200
Score = 38.6 bits (90), Expect = 0.003
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
G GKTS+++ + F +PT+ + + V V L +
Sbjct: 44 GCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHI 86
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 122 bits (307), Expect = 4e-32
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++A + V V L +WDTAGQE + + P+
Sbjct: 40 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 98
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 99 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 156
Query: 229 -------VNREEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
+ + +K IG Y E SAL +G++ VF
Sbjct: 157 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
Score = 37.8 bits (88), Expect = 0.005
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKT +++ Y F PT+ ++A + V V L L
Sbjct: 40 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGL 82
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 121 bits (306), Expect = 6e-32
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GKT +++ + F PT+ + A I V +V+L +WDTAGQE + + P+
Sbjct: 35 ACGKTCLLIVFSKDQFPEVYVPTVFE-NYIADIEVDGKQVELALWDTAGQEDYDRLRPLS 93
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNVDE-PLVLCVVGNKTDLESSRE----- 228
Y + + L+ F I S I W E+K P++L VGNK DL
Sbjct: 94 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL--VGNKKDLRQDEHTRREL 151
Query: 229 -------VNREEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
V EE + I Y E SA +G+ +VF
Sbjct: 152 AKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
Score = 37.0 bits (86), Expect = 0.009
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GKT +++ + F PT+ + A I V +V+L L
Sbjct: 35 ACGKTCLLIVFSKDQFPEVYVPTVFE-NYIADIEVDGKQVELAL 77
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 119 bits (300), Expect = 4e-31
Identities = 51/162 (31%), Positives = 80/162 (49%), Gaps = 22/162 (13%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASF--FTAKINVGENKVKLQVWDTAGQERFRSMAP 173
VGKTS+VV Y + PT F F+A ++V V+LQ+ DTAGQ+ F + P
Sbjct: 30 AVGKTSLVVSYTTNGYPTEYIPTA---FDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRP 86
Query: 174 MYYRNANAALLVFDITQYHSFAAIKT-WVKELKRNVDE-PLVLCVVGNKTDLESSRE--- 228
+ Y N + LL F + SF + WV E++ + + P++L VG ++DL +
Sbjct: 87 LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIIL--VGTQSDLREDVKVLI 144
Query: 229 ---------VNREEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
V E A ++ I +Y E SAL + +++VF
Sbjct: 145 ELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
Score = 34.7 bits (80), Expect = 0.044
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASF--FTAKINVGENKVKLQL 383
VGKTS+VV Y + PT F F+A ++V V+LQL
Sbjct: 30 AVGKTSLVVSYTTNGYPTEYIPTA---FDNFSAVVSVDGRPVRLQL 72
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 119 bits (299), Expect = 6e-31
Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GKT +++ + F PT+ ++ A I V +V+L +WDTAGQE + + P+
Sbjct: 35 ACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 93
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNVDE-PLVLCVVGNKTDLESSRE----- 228
Y + + L+ F + S I WV E+K P++L V NK DL S
Sbjct: 94 YPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIIL--VANKKDLRSDEHVRTEL 151
Query: 229 -------VNREEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
V ++ + I Y E SA +G+ +VF
Sbjct: 152 ARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191
Score = 36.3 bits (84), Expect = 0.017
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GKT +++ + F PT+ + + A I V +V+L L
Sbjct: 35 ACGKTCLLIVFSKDEFPEVYVPTVFEN-YVADIEVDGKQVELAL 77
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 115 bits (290), Expect = 6e-30
Identities = 41/161 (25%), Positives = 82/161 (50%), Gaps = 19/161 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GKT+++ + F + PT+ ++ TA + +++L +WDT+G + ++ P+
Sbjct: 17 QCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLS 75
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNVDE-PLVLCVVGNKTDLESSRE----- 228
Y +++A L+ FDI++ + ++ W E++ ++L VG K+DL +
Sbjct: 76 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL--VGCKSDLRTDVSTLVEL 133
Query: 229 -------VNREEAFHYSKSIGG-TYYETSALQDQ-GIEDVF 260
V+ ++ + +K IG TY E SALQ + + D+F
Sbjct: 134 SNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174
Score = 36.6 bits (85), Expect = 0.009
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GKT+++ + F + PT+ + +TA + +++L L
Sbjct: 17 QCGKTALLHVFAKDCFPENYVPTVFEN-YTASFEIDTQRIELSL 59
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 114 bits (288), Expect = 9e-30
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
VGKT +++ Y F PT+ ++A + V V L +WDTAGQE + + P+
Sbjct: 15 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 73
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE----- 228
Y + +L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 74 YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKL 131
Query: 229 -------VNREEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
+ + +K IG Y E SAL +G++ VF
Sbjct: 132 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171
Score = 35.1 bits (81), Expect = 0.034
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
VGKT +++ Y F PT+ ++A + V V L L
Sbjct: 15 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGL 57
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 114 bits (286), Expect = 3e-29
Identities = 42/163 (25%), Positives = 82/163 (50%), Gaps = 23/163 (14%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASF--FTAKINVGENKVKLQVWDTAGQERFRSMAP 173
GKT+++ + F + PT+ F +TA + +++L +WDT+G + ++ P
Sbjct: 38 QCGKTALLHVFAKDCFPENYVPTV---FENYTASFEIDTQRIELSLWDTSGSPYYDNVRP 94
Query: 174 MYYRNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDL-------- 223
+ Y +++A L+ FDI++ + ++ W E++ + ++L VG K+DL
Sbjct: 95 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL--VGCKSDLRTDVSTLV 152
Query: 224 ----ESSREVNREEAFHYSKSIGG-TYYETSALQDQ-GIEDVF 260
V+ ++ + +K IG TY E SALQ + + D+F
Sbjct: 153 ELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195
Score = 34.7 bits (80), Expect = 0.051
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASF--FTAKINVGENKVKLQL 383
GKT+++ + F + PT+ F +TA + +++L L
Sbjct: 38 QCGKTALLHVFAKDCFPENYVPTV---FENYTASFEIDTQRIELSL 80
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 113 bits (285), Expect = 3e-29
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 22/162 (13%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASF--FTAKINVGENKVKLQVWDTAGQERFRSMAP 173
VGKT +++ Y F PT+ F + + VG + L ++DTAGQE + + P
Sbjct: 28 AVGKTCLLMSYANDAFPEEYVPTV---FDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP 84
Query: 174 MYYRNANAALLVFDITQYHSFAAIKT-WVKELKRNVDE-PLVLCVVGNKTDLESSRE--- 228
+ Y + L+ F + SF +K WV ELK P +L +G + DL +
Sbjct: 85 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLL--IGTQIDLRDDPKTLA 142
Query: 229 ---------VNREEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
+ E+ +K IG Y E SAL +G++ VF
Sbjct: 143 RLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
Score = 36.7 bits (85), Expect = 0.010
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASF--FTAKINVGENKVKLQL 383
VGKT +++ Y F PT+ F + + VG + L L
Sbjct: 28 AVGKTCLLMSYANDAFPEEYVPTV---FDHYAVSVTVGGKQYLLGL 70
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 108 bits (271), Expect = 5e-27
Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMY 175
GKT+M+ + PT+ ++ TA + E +V+L +WDT+G + ++ P+
Sbjct: 37 QCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLC 95
Query: 176 YRNANAALLVFDITQYHSFAAIKT-WVKELKRNVDE-PLVLCVVGNKTDL---------- 223
Y +++A LL FDI++ + + W E+ ++L +G KTDL
Sbjct: 96 YSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLL--IGCKTDLRTDLSTLMEL 153
Query: 224 --ESSREVNREEAFHYSKSIGG-TYYETSALQDQ-GIEDVF 260
+ ++ E+ +K +G Y E SA + I +F
Sbjct: 154 SHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF 194
Score = 36.0 bits (83), Expect = 0.020
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 340 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQL 383
GKT+M+ + PT+ + +TA + E +V+L L
Sbjct: 37 QCGKTAMLQVLAKDCYPETYVPTVFEN-YTACLETEEQRVELSL 79
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 93.1 bits (231), Expect = 8e-21
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 18/159 (11%)
Query: 117 VGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYY 176
VGKT +++ Y F PT+ ++ +A + V V L +WDTAG E + + P+ Y
Sbjct: 166 VGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSY 224
Query: 177 RNANAALLVFDITQYHSFAAIKT-WVKELKRNV-DEPLVLCVVGNKTDLESSRE------ 228
+ L+ F + SF ++ W E++ + + P++L VG K DL ++
Sbjct: 225 PQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIIL--VGTKLDLRDDKDTIEKLK 282
Query: 229 ------VNREEAFHYSKSIGG-TYYETSALQDQGIEDVF 260
+ + +K IG Y E SAL +G++ VF
Sbjct: 283 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 79.3 bits (195), Expect = 1e-16
Identities = 29/149 (19%), Positives = 48/149 (32%), Gaps = 13/149 (8%)
Query: 125 RYIGKMFSHHISPTIGASFF---TAKINVGENKVKLQVWDTAGQER-FRSMA-PMYYRNA 179
+I T + A K+ D G E+ F P
Sbjct: 104 EFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLV 163
Query: 180 NAALLVFDITQ--YHSFAAIKTWVKELKRNVDE---PLVLCVVGNKTDLESSREVNREEA 234
+ LL D+++ +F +V L + + P+V+ V K D R +
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVV--VLTKCDEGVERYIRDAHT 221
Query: 235 FHYSKSIGGTYYETSALQDQGIEDVFLNV 263
F SK ETSA + ++ F +
Sbjct: 222 FALSKK-NLQVVETSARSNVNVDLAFSTL 249
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 77.1 bits (190), Expect = 2e-16
Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 21/171 (12%)
Query: 116 GVGKTSMV--------VRYIGKMFS--HHISPTIGASFFTAKI-NVGENKVKLQVWDTAG 164
GKT+ + G+M S T+ F I V K + ++ G
Sbjct: 24 LSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPG 83
Query: 165 QERFRSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDE------PLVLCVVG 218
Q + + + R + + V D A ++ + ++ N+ E + + +
Sbjct: 84 QVFYNASRKLILRGVDGIVFVADSAPNRLRANAESM-RNMRENLAEYGLTLDDVPIVIQV 142
Query: 219 NKTDLESSREVNR-EEAFHYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
NK DL + V E A + +G+ + VS+ ++
Sbjct: 143 NKRDLPDALPVEMVRAVVDPEGKF--PVLEAVATEGKGVFETLKEVSRLVL 191
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 71.5 bits (175), Expect = 2e-14
Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 28/174 (16%)
Query: 116 GVGKTSMVVRYIGKMFSH---HISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMA 172
GK+S+ KM + + T + + V Q+WD GQ F
Sbjct: 30 RSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNS---SFVNFQIWDFPGQMDFFDPT 86
Query: 173 P---MYYRNANAALLVFDITQYH--SFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSR 227
M +R A + V D + + + V + + + + +K D S
Sbjct: 87 FDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFI-HKVDGLS-- 143
Query: 228 EVNREEAF-------------HYSKSIGGTYYETSALQDQGIEDVFLNVSKGLI 268
+ ++ E + + ++Y TS + D I + F V + LI
Sbjct: 144 DDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTS-IYDHSIFEAFSKVVQKLI 196
Score = 27.6 bits (61), Expect = 8.6
Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 3/28 (10%)
Query: 340 GVGKTSMVVRYIGKMFSH---HISPTIG 364
GK+S+ KM + + T
Sbjct: 30 RSGKSSIQKVVFHKMSPNETLFLESTNK 57
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 68.8 bits (169), Expect = 1e-13
Identities = 41/150 (27%), Positives = 60/150 (40%), Gaps = 15/150 (10%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYR 177
GKT+++ R PTIG F ++ +KL VWD GQ R YY
Sbjct: 30 GKTTILYRLQIGEVVT-TKPTIG--FNVETLSYK--NLKLNVWDLGGQTSIRPYWRCYYA 84
Query: 178 NANAALLVFDITQYHSFAAIKTWVKELKRNVDEP----LVLCVVGNKTDLE---SSREVN 230
+ A + V D T + KEL + E L V NK D S+ EV+
Sbjct: 85 DTAAVIFVVDSTDKDRMSTAS---KELHLMLQEEELQDAALLVFANKQDQPGALSASEVS 141
Query: 231 REEAFHYSKSIGGTYYETSALQDQGIEDVF 260
+E K + +SA++ +GI +
Sbjct: 142 KELNLVELKDRSWSIVASSAIKGEGITEGL 171
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 68.4 bits (168), Expect = 1e-13
Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 21/153 (13%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE---NKVKLQVWDTAGQERFRSMAPM 174
GKTS++ R + PT+G +N+ + +VWD GQ R
Sbjct: 34 GKTSILYRLHLGDVVTTV-PTVG-------VNLETLQYKNISFEVWDLGGQTGVRPYWRC 85
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEP----LVLCVVGNKTDLE---SSR 227
Y+ + +A + V D T K EL +DE +L + NK DL S
Sbjct: 86 YFSDTDAVIYVVDSTDRDRMGVAK---HELYALLDEDELRKSLLLIFANKQDLPDAASEA 142
Query: 228 EVNREEAFHYSKSIGGTYYETSALQDQGIEDVF 260
E+ + + T ++S+ G+ +
Sbjct: 143 EIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGM 175
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 68.4 bits (168), Expect = 2e-13
Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 24/155 (15%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE---NKVKLQVWDTAGQERFRSMAPM 174
GKT+ V F+ + PT+G F N+ + V +++WD GQ RFRSM
Sbjct: 34 GKTTFVNVIASGQFNEDMIPTVG---F----NMRKITKGNVTIKLWDIGGQPRFRSMWER 86
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEP----LVLCVVGNKTDLE---SSR 227
Y R +A + + D A K EL +D+P + + V+GNK DL +
Sbjct: 87 YCRGVSAIVYMVDAADQEKIEASK---NELHNLLDKPQLQGIPVLVLGNKRDLPGALDEK 143
Query: 228 EVNREEAFHYSKSIGGTYY--ETSALQDQGIEDVF 260
E+ E + S S + I+
Sbjct: 144 EL--IEKMNLSAIQDREICCYSISCKEKDNIDITL 176
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 67.6 bits (166), Expect = 2e-13
Identities = 41/153 (26%), Positives = 59/153 (38%), Gaps = 21/153 (13%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE---NKVKLQVWDTAGQERFRSMAPM 174
GKT+++ R PTIG F NV +K QVWD G R
Sbjct: 19 GKTTILYRLQVGEVVT-TIPTIG---F----NVETVTYKNLKFQVWDLGGLTSIRPYWRC 70
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEP----LVLCVVGNKTDLE---SSR 227
YY N +A + V D K EL ++E +L V NK D+E +S
Sbjct: 71 YYSNTDAVIYVVDSCDRDRIGISK---SELVAMLEEEELRKAILVVFANKQDMEQAMTSS 127
Query: 228 EVNREEAFHYSKSIGGTYYETSALQDQGIEDVF 260
E+ K ++TSA + G+++
Sbjct: 128 EMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 160
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 68.0 bits (167), Expect = 2e-13
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 21/153 (13%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE---NKVKLQVWDTAGQERFRSMAPM 174
GKT+++ ++ G+ ISPT+G N+ KL +WD GQ+ RS
Sbjct: 30 GKTTILKKFNGEDVDT-ISPTLG-------FNIKTLEHRGFKLNIWDVGGQKSLRSYWRN 81
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEP----LVLCVVGNKTDLE---SSR 227
Y+ + + + V D + +EL+ + E L + NK DL S
Sbjct: 82 YFESTDGLIWVVDSADRQRMQDCQ---RELQSLLVEERLAGATLLIFANKQDLPGALSCN 138
Query: 228 EVNREEAFHYSKSIGGTYYETSALQDQGIEDVF 260
+ +S SA+ + +
Sbjct: 139 AIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI 171
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 68.1 bits (167), Expect = 2e-13
Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 23/156 (14%)
Query: 118 GKTSMVVRY-IGKMFSHHISPTIGASFFTAKINVGE---NKVKLQVWDTAGQERFRSMAP 173
GKT+++ + S +I PTIG ++ + + + V+D +GQ R+R++
Sbjct: 33 GKTTIINKLKPSNAQSQNILPTIG-------FSIEKFKSSSLSFTVFDMSGQGRYRNLWE 85
Query: 174 MYYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEP------LVLCVVGNKTDLE--- 224
YY+ A + V D + K +EL ++ P + + NK DL
Sbjct: 86 HYYKEGQAIIFVIDSSDRLRMVVAK---EELDTLLNHPDIKHRRIPILFFANKMDLRDAV 142
Query: 225 SSREVNREEAFHYSKSIGGTYYETSALQDQGIEDVF 260
+S +V++ K + A++ +G+++
Sbjct: 143 TSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGV 178
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 66.4 bits (163), Expect = 4e-13
Identities = 35/153 (22%), Positives = 55/153 (35%), Gaps = 21/153 (13%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE---NKVKLQVWDTAGQERFRSMAPM 174
GKT+++ + PTIG NV + VWD GQ++ R +
Sbjct: 12 GKTTILYKLKLGEIVT-TIPTIG-------FNVETVEYKNISFTVWDVGGQDKIRPLWRH 63
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEP----LVLCVVGNKTDLE---SSR 227
Y++N + V D + EL R + E VL V NK DL ++
Sbjct: 64 YFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120
Query: 228 EVNREEAFHYSKSIGGTYYETSALQDQGIEDVF 260
E+ + H + T A G+ +
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 66.1 bits (162), Expect = 9e-13
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 21/153 (13%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE---NKVKLQVWDTAGQERFRSMAPM 174
GKT+++ + + SH I+PT G N+ KL VWD GQ + R
Sbjct: 28 GKTTLLKQLASEDISH-ITPTQG-------FNIKSVQSQGFKLNVWDIGGQRKIRPYWRS 79
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEP----LVLCVVGNKTDLE---SSR 227
Y+ N + + V D F +EL ++E + + + NK DL +
Sbjct: 80 YFENTDILIYVIDSADRKRFEETG---QELTELLEEEKLSCVPVLIFANKQDLLTAAPAS 136
Query: 228 EVNREEAFHYSKSIGGTYYETSALQDQGIEDVF 260
E+ H + SAL +G++D
Sbjct: 137 EIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM 169
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 65.0 bits (159), Expect = 2e-12
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 21/153 (13%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE---NKVKLQVWDTAGQERFRSMAPM 174
GKT+++ ++ H SPTIG NV E N + +WD GQE RS
Sbjct: 28 GKTTILYQFSMNEVVH-TSPTIG-------SNVEEIVINNTRFLMWDIGGQESLRSSWNT 79
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEP----LVLCVVGNKTDLE---SSR 227
YY N ++V D T + + +EL + + L + NK D++ +
Sbjct: 80 YYTNTEFVIVVVDSTDRERISVTR---EELYKMLAHEDLRKAGLLIFANKQDVKECMTVA 136
Query: 228 EVNREEAFHYSKSIGGTYYETSALQDQGIEDVF 260
E+++ K AL +G+
Sbjct: 137 EISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 169
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 65.0 bits (159), Expect = 3e-12
Identities = 34/150 (22%), Positives = 55/150 (36%), Gaps = 15/150 (10%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYR 177
GKT+++ + PTIG F + + VWD GQ++ R + Y++
Sbjct: 41 GKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK--NICFTVWDVGGQDKIRPLWRHYFQ 95
Query: 178 NANAALLVFDITQYHSFAAIKTWVKELKRNVDEP----LVLCVVGNKTDLE---SSREVN 230
N + V D EL++ + E VL V NK D+ E+
Sbjct: 96 NTQGLIFVVDSNDRERVQESA---DELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELT 152
Query: 231 REEAFHYSKSIGGTYYETSALQDQGIEDVF 260
+ + +S T A Q G+ D
Sbjct: 153 DKLGLQHLRSRTWYVQATCATQGTGLYDGL 182
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 63.4 bits (155), Expect = 6e-12
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 21/153 (13%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE---NKVKLQVWDTAGQERFRSMAPM 174
GKT+++ ++ H SPTIG NV E N + +WD GQE RS
Sbjct: 33 GKTTILYQFSMNEVVH-TSPTIG-------SNVEEIVINNTRFLMWDIGGQESLRSSWNT 84
Query: 175 YYRNANAALLVFDITQYHSFAAIKTWVKELKRNVDEP----LVLCVVGNKTDLE---SSR 227
YY N ++V D T + + +EL + + L + NK D++ +
Sbjct: 85 YYTNTEFVIVVVDSTDRERISVTR---EELYKMLAHEDLRKAGLLIFANKQDVKECMTVA 141
Query: 228 EVNREEAFHYSKSIGGTYYETSALQDQGIEDVF 260
E+++ K AL +G+
Sbjct: 142 EISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 65.4 bits (159), Expect = 9e-12
Identities = 32/172 (18%), Positives = 54/172 (31%), Gaps = 23/172 (13%)
Query: 116 GVGKTSMVVRYIGKMFSH---HISPTIGASFFTAKINVGENKVKLQVWDTAGQERF---- 168
G GK+SM + + TI + + L +WD GQ+ F
Sbjct: 13 GSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFL---GNMTLNLWDCGGQDVFMENY 69
Query: 169 -RSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKELK--RNVDEPLVLCVVGNKTDL-- 223
++ + VFD+ I+ + K LK R + V+ +K DL
Sbjct: 70 FTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129
Query: 224 ESSREVNREEAFHYSKSI-------GGTYYETSALQDQGIEDVFLNVSKGLI 268
RE + + TS D+ + + + LI
Sbjct: 130 LDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIW-DESLYKAWSQIVCSLI 180
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 60.3 bits (147), Expect = 9e-11
Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 22/157 (14%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYR 177
GKT+++ + PT T++ + +K +D G + R + Y+
Sbjct: 35 GKTTLLHMLKNDRLATLQ-PTWH---PTSE-ELAIGNIKFTTFDLGGHIQARRLWKDYFP 89
Query: 178 NANAALLVFDITQYHSFAAIKTWVKELKRNVDEP----LVLCVVGNKTDLE---SSREVN 230
N + + D F + EL + + ++GNK D S E+
Sbjct: 90 EVNGIVFLVDAADPERFDEAR---VELDALFNIAELKDVPFVILGNKIDAPNAVSEAELR 146
Query: 231 REEAFHYSKSIGGTY-------YETSALQDQGIEDVF 260
+ + S + G + F
Sbjct: 147 SALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 183
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 60.4 bits (147), Expect = 1e-10
Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 27/162 (16%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYR 177
GKT+++ H+ PT+ + ++ + + +D G + R + Y
Sbjct: 37 GKTTLLHMLKDDRLGQHV-PTLH--PTSEELTIA--GMTFTTFDLGGHIQARRVWKNYLP 91
Query: 178 NANAALLVFDITQYHSFAAIKTWVKELKRNVDEP----LVLCVVGNKTDLE---SSREVN 230
N + + D + K +EL + + + + ++GNK D S +
Sbjct: 92 AINGIVFLVDCADHERLLESK---EELDSLMTDETIANVPILILGNKIDRPEAISEERLR 148
Query: 231 REEAFHYSKSIGGTY------------YETSALQDQGIEDVF 260
+ + G+ + S L+ QG + F
Sbjct: 149 EMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 190
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 1e-09
Identities = 74/539 (13%), Positives = 147/539 (27%), Gaps = 181/539 (33%)
Query: 17 TYYETDLFLLNRTNQSK---EQLRRKQKE---GKIQTSSLTEVSVNLPKLNYQKNN-KNK 69
T L + + E++ R + I+T + S+ Q++ N
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRLYND 122
Query: 70 KKTLIPY----LEMLVSNKIKVGLLSDK-----FVVG--------LSI----NSRVPNCF 108
+ Y L+ K++ LL + + G +++ + +V
Sbjct: 123 NQVFAKYNVSRLQPY--LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 109 EANWFWLGVGKTSMVVRYIGKM--FSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQE 166
+ FWL + + + + + I P +T++ + N +KL++ Q
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN-----WTSRSDHSSN-IKLRIHSI--QA 232
Query: 167 RFRS-MAPMYYRNANAALLV------------FDI-------TQYHS------------- 193
R + Y N LLV F++ T++
Sbjct: 233 ELRRLLKSKPYEN---CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 194 -----------------FA-AIKTWVKELKRNVDE--PLVLCVVG-----NKTDLESSRE 228
+ ++L R V P L ++ ++ +
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 229 VNREEAFHYSKSIGGTY-----YETSAL-QDQGI--EDVFLNVSKGLICL------SQE- 273
VN ++ + I + E + + ++ L+ L +
Sbjct: 350 VNCDK---LTTIIESSLNVLEPAEYRKMFDRLSVFPPSA--HIPTILLSLIWFDVIKSDV 404
Query: 274 -----SLHTSSLRVYDSDNITSANPRGVVEITPLSSLDTPPLTEAETA---------KFV 319
LH SL + + I P L+ E E A
Sbjct: 405 MVVVNKLHKYSL-------VEKQPKESTISI-PSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 320 VGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGE--- 376
+ +P + ++ +IG HH+ I E
Sbjct: 457 KTFDSDDLIPPYLDQYFYS-----------HIG----HHLK----------NIEHPERMT 491
Query: 377 --NKVKLQLRTGLKVSKIPVPTRNREGATTGRITEPDTMNNNNKKKNRVATTGRPVRSR 433
V L R L+ KI R+ A + +T+ K + P R
Sbjct: 492 LFRMVFLDFRF-LE-QKI----RHDSTAWNASGSILNTLQQLKFYKPYI-CDNDPKYER 543
Score = 56.4 bits (135), Expect = 2e-08
Identities = 62/423 (14%), Positives = 124/423 (29%), Gaps = 124/423 (29%)
Query: 186 FDIT--QYHSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLE----SSREVNREEAFHYSK 239
F+ QY + + N D V D+ S E+ +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-------DMPKSILSKEEI--DHIIMSKD 59
Query: 240 SIGGTYYETSALQDQG-------IEDVFLNVSKGLIC--LSQESLHTS-SLRVYDS--DN 287
++ GT L + +E+V L ++ + + E S R+Y D
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEV-LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 288 ITSAN----PRGVVEITPLSSLDTPPLTEAETAKFVV-------GLSI-------NSRVP 329
+ + N V + P L L E AK V+ G + + +V
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQA-LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 330 NCFEANWFWLGVGKTSMVVRYIGKM--FSHHISPTIGA-SFFTAKINVGENKVKLQLRTG 386
+ FWL + + + + + I P + S ++ I + + ++ +LR
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 387 LK-------------V------------SKIPVPTRNRE------GATTGRI-------- 407
LK V KI + TR ++ ATT I
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 408 -TEPDTMNNNNKKKNRVATTGRPVRSRGGPDRLAINPEGVYCNARFMQAITLHIGDKVTV 466
T + + K + P + L NP + +++ I + +
Sbjct: 298 LTPDEVKSLLLKYLD-CRPQDLP------REVLTTNP----------RRLSI-IAESIRD 339
Query: 467 YTVHGKQFEGYLKTFSKQFELVISMTHQVDPENPQCIDPNTV----VDMKIFKLDDIVRI 522
++ + + +I + ++ ++P + +F I
Sbjct: 340 GLAT---WDNWKHVNCDKLTTIIESS--LN-----VLEPAEYRKMFDRLSVFPPS--AHI 387
Query: 523 EAK 525
Sbjct: 388 PTI 390
Score = 31.0 bits (69), Expect = 1.4
Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 38/144 (26%)
Query: 503 IDPNTVVDM--KIFK---LDDIVRIEAKNVDLEYAVRDTFAT--DTAISKFNGVIGERE- 554
D V DM I +D I+ + V + T + + + KF +
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHII-MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 555 ---LEPWAEDMLGPGGDDDF---ELDQMCN-------HNVGTATSSIKMFIF---PLIQV 598
+ P + P + D++ N +NV S ++ ++ L+++
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV----SRLQPYLKLRQALLEL 147
Query: 599 AP------YTME---ESVLAIQSC 613
P + ++ +A+ C
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVC 171
Score = 30.2 bits (67), Expect = 2.3
Identities = 49/324 (15%), Positives = 104/324 (32%), Gaps = 79/324 (24%)
Query: 8 SLTHNTYLPTYYETDLFLLNRTNQSKEQLRRKQKEGKIQTSSL--TEVSVNLPKL-NYQK 64
SL H++ T E LL + + L R+ + S+ + L N++
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 65 NNKNKKKTLIPYLEMLVSNKIKVGLLSDKFVVGLSI---NSRVP-NCFEANWFWL----- 115
N +K T+I E + N ++ F LS+ ++ +P WF +
Sbjct: 350 VNCDKLTTII---ESSL-NVLEPAEYRKMF-DRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 116 -----GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQ---VWDTAGQER 167
+ K S+V + K + I P+I + K+ + EN+ L V +
Sbjct: 405 MVVVNKLHKYSLVEKQ-PKESTISI-PSI---YLELKVKL-ENEYALHRSIV------DH 452
Query: 168 FRSMAPMYYRNANAALLVFD--ITQ---YHSFAAIKT--------------WVKELKRNV 208
+ P + + + D +H ++++ R+
Sbjct: 453 YN--IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 209 DEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDV--FL-NVSK 265
G+ + + Y I + ++ + + FL + +
Sbjct: 511 STA--WNASGSILNTLQQLKF-------YKPYI----CDNDPKYERLVNAILDFLPKIEE 557
Query: 266 GLI-----CLSQESLHTSSLRVYD 284
LI L + +L +++
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFE 581
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 2e-09
Identities = 74/491 (15%), Positives = 139/491 (28%), Gaps = 165/491 (33%)
Query: 123 VVRYIGKMF-SHHISPTIGASF----------FTAKINVGENKV-----KLQVWDTAGQE 166
V +++G + S + P+ F F + N + KL +
Sbjct: 61 VGKFLG--YVSSLVEPSKVGQFDQVLNLCLTEFENCY-LEGNDIHALAAKLLQENDTTLV 117
Query: 167 RFRSMAPMYY-----------RNANAALLVFDITQYHSFAAI-------KTWVKELKR-- 206
+ + + Y + +N+AL AI + +EL+
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 207 NVDEPLV--LCVVGNKTDLESSREVNREEAFHYSKSI------------GGTYYETSALQ 252
LV L +T E R E +++ + Y S
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAE-KVFTQGLNILEWLENPSNTPDKDYLLSIP- 235
Query: 253 DQGIEDVFLNVSKGLICLSQESLHTSSLRVYD------SDNI--TSANPRGVVEITPLSS 304
+S LI + Q + + + ++ + + + +G+V ++
Sbjct: 236 ----------ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 305 LDTPP-----LTEAETAKFVVGLSINSRVPNCF---------EANWFWLGVGK-TSM-VV 348
D+ + +A T F +G+ PN N G + M +
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN----NEGVPSPMLSI 341
Query: 349 R---------YIGKMFSH-----HISPTIGASFFTAKINVGENKV-----------KLQL 383
Y+ K SH + I + +N +N V L L
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVE--I------SLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 384 R-----TGLKVSKIPVPTRNREGATTGR---ITEP---DTMNNNNKK-KNRVATTGRPVR 431
R +GL S+IP R+ + R + P + + +
Sbjct: 394 RKAKAPSGLDQSRIPF--SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 432 SRGGPDRLAINPEGVYC-----NARFMQA-ITLHIGDKVTVYTVHGKQFEGYLKTFSKQF 485
+ I P VY + R + I+ I D + V +E +
Sbjct: 452 ----AKDIQI-P--VYDTFDGSDLRVLSGSISERIVDCIIRLPVK---WETTTQF----- 496
Query: 486 ELVISMTHQVD 496
TH +D
Sbjct: 497 ----KATHILD 503
Score = 42.3 bits (99), Expect = 5e-04
Identities = 53/348 (15%), Positives = 91/348 (26%), Gaps = 159/348 (45%)
Query: 113 FWLGVGKTSMVVRYIGKMFSHHISP--TIGASFFTAKINVGENKVKLQVWDTAGQERFRS 170
F++G VR + P ++ S + E
Sbjct: 304 FFIG-------VR------CYEAYPNTSLPPSILEDSLENNEG----------------V 334
Query: 171 MAPMYYRNANAALLVFDITQYHSFAAIKTWVKELKR---------NVDEPLVLCVVGNKT 221
+PM L + ++TQ + L N + LV+ G
Sbjct: 335 PSPM--------LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS--GPPQ 384
Query: 222 DLES----------------SREVNREEA-------------FHYSKSIGGTYYETSALQ 252
L SR E FH ++ A
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH-------SHLLVPA-S 436
Query: 253 DQGIEDVFLNVSKGLICLSQESLHTSSLR--VYDSDNITSANPRGVVEITPLSSLDTPPL 310
D +D+ N S + ++ VYD+ ++ R LS + +
Sbjct: 437 DLINKDLVKN---------NVSFNAKDIQIPVYDTF--DGSDLRV------LSGSISERI 479
Query: 311 TEAETAKFVVGLSINSRVPNCFEANWFWLGVGKTSMVVRYIGKMFSHHISPTIGASFFTA 370
+ R+P W T+ + + HI
Sbjct: 480 VDCII-----------RLP----VKW-----ETTT-------QFKATHI----------- 501
Query: 371 KINVGENKVKLQLRTGLKVSKIPVPT-RNREGATTG-RITEPDTMNNN 416
++ G G S + V T RN++G TG R+ T++ N
Sbjct: 502 -LDFG---------PG-GASGLGVLTHRNKDG--TGVRVIVAGTLDIN 536
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 56.4 bits (136), Expect = 9e-09
Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 20/135 (14%)
Query: 134 HISPTIGASFFTAKINVGE---NKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQ 190
PTIG NV + VWD GQ++ R + Y++N + V D
Sbjct: 192 TTIPTIG-------FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 244
Query: 191 YHSFAAIKTWVKELKRNVDEP----LVLCVVGNKTDLE---SSREVNREEAFHYSKSIGG 243
+ +EL R + E VL V NK DL ++ E+ + H +
Sbjct: 245 RERVNEAR---EELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNW 301
Query: 244 TYYETSALQDQGIED 258
T A G+ +
Sbjct: 302 YIQATCATSGDGLYE 316
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 54.9 bits (132), Expect = 5e-08
Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 20/135 (14%)
Query: 134 HISPTIGASFFTAKINVGE---NKVKLQVWDTAGQERFRSMAPMYYRNANAALLVFDITQ 190
PT+G F NV VK VWD GQ++ R + YY + V D
Sbjct: 349 TTIPTVG---F----NVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD 401
Query: 191 YHSFAAIKTWVKELKRNVDEP----LVLCVVGNKTDLE---SSREVNREEAFHYSKSIGG 243
+ +EL R +++ ++ + NK DL E+ + +
Sbjct: 402 RDRIDEAR---QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNW 458
Query: 244 TYYETSALQDQGIED 258
+ A G+ +
Sbjct: 459 YVQPSCATSGDGLYE 473
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 53.9 bits (129), Expect = 5e-08
Identities = 23/171 (13%), Positives = 59/171 (34%), Gaps = 24/171 (14%)
Query: 116 GVGKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENK--VKLQVWDTAGQERFRSMA- 172
GK+S+ M + + T+ ++ + L V + GQ + +
Sbjct: 9 RCGKSSICKVVFHNMQPLDTL-YLES---TSNPSLEHFSTLIDLAVMELPGQLNYFEPSY 64
Query: 173 --PMYYRNANAALLVFDITQY--HSFAAIKTWVKELKRNVDEPLVLCVVGNKTDL---ES 225
+++ A + V D ++ + ++ + + ++ +K D +
Sbjct: 65 DSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLI-HKVDGLSEDF 123
Query: 226 SREVNREEAFHYSKSIGG--------TYYETSALQDQGIEDVFLNVSKGLI 268
+ R+ + + ++Y TS + D I + F + + LI
Sbjct: 124 KVDAQRDIMQRTGEELLELGLDGVQVSFYLTS-IFDHSIYEAFSRIVQKLI 173
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 49.0 bits (117), Expect = 1e-06
Identities = 26/121 (21%), Positives = 41/121 (33%), Gaps = 13/121 (10%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMA-PMYY 176
GKT + VR + + +I S K+N L + D G E R +
Sbjct: 19 GKTLLFVRLLTGQYRD-TQTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFK 76
Query: 177 RNANAALLVFDITQYHSFAAIKTWVKELKRNV--DEPLV-----LCVVGNKTDLESSREV 229
+A A + V D + V E V D + L + NK D+ ++
Sbjct: 77 SSARAVVFVVDSAAFQREVKD---VAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA 133
Query: 230 N 230
Sbjct: 134 K 134
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 46.3 bits (110), Expect = 8e-06
Identities = 15/124 (12%), Positives = 40/124 (32%), Gaps = 17/124 (13%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYR 177
GKTS++ + + + + + D G + R Y +
Sbjct: 24 GKTSLLTLLTTDSVRPTV-VSQEPL-----SAADYDGSGVTLVDFPGHVKLRYKLSDYLK 77
Query: 178 NANAAL--LVFDI---TQYHSFAAIKTWVKEL-----KRNVDEPLVLCVVGNKTDLESSR 227
+ L+F + ++ ++ + +L + NK++L ++R
Sbjct: 78 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL-IACNKSELFTAR 136
Query: 228 EVNR 231
++
Sbjct: 137 PPSK 140
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 45.5 bits (108), Expect = 1e-05
Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 21/126 (16%)
Query: 118 GKTSMVVRYIGKMFSHHISPTIGASFFTAKINVGENKVKLQVWDTAGQERFRSMAPMYYR 177
GKTS++ + + + + + D G + R Y +
Sbjct: 60 GKTSLLTLLTTDSVRPTV-VSQEPL-----SAADYDGSGVTLVDFPGHVKLRYKLSDYLK 113
Query: 178 NANAAL--LVFDI---TQYHSFAAIKTW------VKELKRNVDEP-LVLCVVGNKTDLES 225
+ L+F + + + E L+ C NK++L +
Sbjct: 114 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC---NKSELFT 170
Query: 226 SREVNR 231
+R ++
Sbjct: 171 ARPPSK 176
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 42.9 bits (102), Expect = 2e-04
Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 17/114 (14%)
Query: 155 VKLQVWDTAGQ-------ERF---RSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKEL 204
++ DTAG E RS M A+ L + D+ + +
Sbjct: 281 TMFRLTDTAGLREAGEEIEHEGIRRSRMKM--AEADLILYLLDLGTERLDDELTEIRELK 338
Query: 205 KRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIED 258
+ + V NK D ++ + + G SAL GI+
Sbjct: 339 AAHPAAKFL--TVANKLDRAANADALIRAIADGT---GTEVIGISALNGDGIDT 387
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 39.8 bits (93), Expect = 0.002
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 137 PTIGASFFTAK-INVG---ENKVKLQVWDTAG------QER----FRSMAPMYYRNANAA 182
P I + FT + INVG + + Q+ DT G ER +++ + Y
Sbjct: 192 PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGN-LI 250
Query: 183 LLVFDITQY--HSFAAIKTWVKELKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKS 240
+ +FD +++ +E+ + L VV NK D+ + E N + + K
Sbjct: 251 IYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFL-VVINKIDV--ADEENIKRLEKFVKE 307
Query: 241 IGGTYYETSALQDQGIEDV 259
G + SAL+ GI+ V
Sbjct: 308 KGLNPIKISALKGTGIDLV 326
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 38.3 bits (90), Expect = 0.002
Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 20/114 (17%)
Query: 155 VKLQVWDTAGQ-------ERF---RSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKEL 204
+ L + DTAG ER R+ + A+ L + D T + + W + +
Sbjct: 52 MPLHIIDTAGLREASDEVERIGIERAWQEI--EQADRVLFMVDGTTTDAVDPAEIWPEFI 109
Query: 205 KRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIED 258
R + + VV NK D+ E S+ G SA +G++
Sbjct: 110 ARLPAKLPIT-VVRNKADITG-------ETLGMSEVNGHALIRLSARTGEGVDV 155
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 37.9 bits (89), Expect = 0.009
Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 22/115 (19%)
Query: 155 VKLQVWDTAGQ--------ERF---RSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKE 203
+ ++ DTAG ER R++ + A+ L V D + + ++
Sbjct: 291 ILFRIVDTAGVRSETNDLVERLGIERTLQEI--EKADIVLFVLDASS-PLDEEDRKILER 347
Query: 204 LKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIED 258
+K ++ + VV NK D+ EE + SAL+ +G+E
Sbjct: 348 IK---NKRYL--VVINKVDVVEKIN---EEEIKNKLGTDRHMVKISALKGEGLEK 394
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 37.5 bits (88), Expect = 0.011
Identities = 29/118 (24%), Positives = 41/118 (34%), Gaps = 30/118 (25%)
Query: 155 VKLQVWDTAGQ-------ERF---RSMAPMYYRNANAALLVFDITQYHSFAAIKTWVKE- 203
+ +QV DTAG E+ RS A+ LL D W
Sbjct: 272 IPVQVLDTAGIRETSDQVEKIGVERSRQAA--NTADLVLLTIDAAT--------GWTTGD 321
Query: 204 ---LKRNVDEPLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIED 258
++ PL+ +V NK DL + + E I T+A Q QGI+
Sbjct: 322 QEIYEQVKHRPLI--LVMNKIDLVEKQLITSLEYPENITQI----VHTAAAQKQGIDS 373
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 35.9 bits (83), Expect = 0.022
Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 35/167 (20%)
Query: 117 VGKTSMVVRYIGKMFSHHIS---PTIGASFFTAK-INVG---ENKVKLQVWDTAG----- 164
VGK+S + +S + + FT K + VG K Q+ DT G
Sbjct: 40 VGKSSFMNI---------VSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRA 90
Query: 165 -QER--FRSMAPMYYRNANAALL-VFDITQYHSFAAIKTWVKELKRNVDEPLV---LCVV 217
+ R + N +L + DI++ IK + ++ + +
Sbjct: 91 FENRNTIEMTTITALAHINGVILFIIDISE-QCGLTIKEQINLFY-SIKSVFSNKSIVIG 148
Query: 218 GNKTDLESSREVNRE-----EAFHYSKSIGGTYYETSALQDQGIEDV 259
NK D + ++ + + + + S L G+E
Sbjct: 149 FNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQA 195
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.12
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 10/33 (30%)
Query: 272 QESLH--TSSLRVYDSDNITSANP----RGVVE 298
+++L +SL++Y D SA P + +E
Sbjct: 19 KQALKKLQASLKLYADD---SA-PALAIKATME 47
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 32.6 bits (75), Expect = 0.33
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 216 VVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDV 259
+V NK D+ + E EAF + + SA+ +G+ ++
Sbjct: 279 IVANKMDMPEAAE--NLEAFKEKLTDDYPVFPISAVTREGLREL 320
>1i0v_A RNAse T1, guanyl-specific ribonuclease T1; stability, metal
binding, 2'GMP, hydrolase; HET: 2GP; 1.23A {Aspergillus
oryzae} SCOP: d.1.1.4 PDB: 1bvi_A* 1gsp_A* 1bu4_A*
1i0x_A* 1rga_A* 1rgc_A* 1rnt_A* 1ygw_A 2bu4_A* 2gsp_A*
2rnt_A* 3bu4_A* 3gsp_A* 3rnt_A 3urp_A* 4bu4_A* 4gsp_A*
5bu4_A* 5gsp_A* 5rnt_A* ...
Length = 104
Score = 29.6 bits (66), Expect = 0.78
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 10/60 (16%)
Query: 399 REGATTGRITEPDTMNNNNKKKNRVATTGR--PVRSRG--------GPDRLAINPEGVYC 448
+G T G + P NN V++ P+ S G G DR+ N
Sbjct: 28 EDGETVGSNSYPHKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLA 87
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 31.0 bits (71), Expect = 1.2
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 211 PLVLCVVGNKTDLESSREVNR-EEAFHYSKSIGGTYYETSALQDQGIEDV 259
V+ NK DL + E E + G + SA +GI+++
Sbjct: 112 EPVIVF--NKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDEL 159
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 31.1 bits (71), Expect = 1.2
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 213 VLCVVGNKTDLESSREVNR-EEAFHYSKSIGGTYYETSALQDQGIEDV 259
++ + NK DL ++ E ++IG S+ G++ +
Sbjct: 164 LIVL--NKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPL 209
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 30.2 bits (69), Expect = 1.7
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 211 PLVLCVVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDV 259
V+ + NK DL ++ + S +TSA GIE++
Sbjct: 117 ETVMVI--NKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEEL 163
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 30.5 bits (68), Expect = 1.8
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 116 GVGKTSMVVRYIGKMF----SHHISPTIGASFFTAKINVGENKVKLQVWDTAG 164
G+GK++++ F + H P + T + ++KL + T G
Sbjct: 52 GLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVG 104
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 30.2 bits (69), Expect = 1.8
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 211 PLVLCVVGNKTDL---ESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDV 259
++C+ K DL + + + + A Y ++IG Y TS+ + D+
Sbjct: 119 QPIICI--TKMDLIEDQDTEDTIQAYAEDY-RNIGYDVYLTSSKDQDSLADI 167
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 29.8 bits (67), Expect = 2.6
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 204 LKRNVDEPLVLCVVGNKTDLESSREVNR-----EEAFHYSKSIGGTY----YETSALQDQ 254
+K+ V E + VV NK D E +E A + SA++ +
Sbjct: 211 IKKGVLELADIVVV-NKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGR 269
Query: 255 GIEDVF 260
G+ +++
Sbjct: 270 GLAELW 275
>1fus_A Ribonuclease F1; hydrolase(endoribonuclease); 1.30A {Gibberella
fujikuroi} SCOP: d.1.1.4 PDB: 1fut_A* 1rck_A* 1rcl_A*
Length = 106
Score = 28.1 bits (62), Expect = 3.2
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 9/59 (15%)
Query: 399 REGATTGRITEPDTMNNNNKKKNRVATTGR--PVRSRG-------GPDRLAINPEGVYC 448
+ T G T P T NN V + P++S G G DR+ IN Y
Sbjct: 28 QNDDTAGSSTYPHTYNNYEGFDFPVDGPYQEFPIKSGGVYTGGSPGADRVVINTNCEYA 86
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 29.5 bits (66), Expect = 3.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 57 LPKLNYQKNNKNKKKTLIPYLEMLVSNK 84
L K+ K++ +K TL+ YL +V NK
Sbjct: 245 LNKIADTKSSIDKNITLLHYLITIVENK 272
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 29.1 bits (66), Expect = 5.4
Identities = 10/44 (22%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 216 VVGNKTDLESSREVNREEAFHYSKSIGGTYYETSALQDQGIEDV 259
V NK DL + G SAL G+ +
Sbjct: 274 VALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPAL 315
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 28.7 bits (64), Expect = 6.5
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 10/66 (15%)
Query: 204 LKRNVDEPLVLCVVGNKTDLESSREVNR-----EEAFHYSKSIGGTY----YETSALQDQ 254
+KR + E L V K+D + R A + + SA +
Sbjct: 206 IKRGIIEMADLVAV-TKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGE 264
Query: 255 GIEDVF 260
GI +++
Sbjct: 265 GISEMW 270
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 27.6 bits (62), Expect = 8.8
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 477 YLKTFSKQFELVISMTHQVDPENPQCIDPNTVV 509
YL + Q ++ +DP++ +C NT V
Sbjct: 123 YLSRWISQHPGLVFGYLNLDPDSARCSGTNTPV 155
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and
PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A
{Schizosaccharomyces pombe} PDB: 3swn_C
Length = 113
Score = 26.8 bits (59), Expect = 9.9
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 459 HIGDKVTVYTVHGKQFEGYLKTFSKQFELVISMTHQV--DPENPQCIDPNTVVDMKIFKL 516
+ ++ G+Q G LK F + LV+ + +PE+ + + + + +
Sbjct: 31 YQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRG 90
Query: 517 DDIVRIEA 524
+V I
Sbjct: 91 TTLVLIAP 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.392
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,132,093
Number of extensions: 543406
Number of successful extensions: 1435
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1265
Number of HSP's successfully gapped: 224
Length of query: 617
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 518
Effective length of database: 3,937,614
Effective search space: 2039684052
Effective search space used: 2039684052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.2 bits)