BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy303
(62 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24168|ORC2_DROME Origin recognition complex subunit 2 OS=Drosophila melanogaster
GN=Orc2 PE=1 SV=2
Length = 618
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 35/44 (79%)
Query: 19 ENFNILLHGFGSKYKVINEFHKKMLSNSKVLVINGFFPDLTLKE 62
E FNILL+G GSK++++ FH+++L VLV+NGFFP LT+K+
Sbjct: 349 EGFNILLYGLGSKHQLLQSFHREVLHKQTVLVVNGFFPSLTIKD 392
>sp|Q75PQ8|ORC2_RAT Origin recognition complex subunit 2 OS=Rattus norvegicus GN=Orc2
PE=2 SV=1
Length = 576
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 13 IIQLEIENFNILLHGFGSKYKVINEFHKKMLSNSKVLVINGFFPDLTLK 61
I+QL + FNI+L+G GSK ++ +F ML +S +VINGFFP +++K
Sbjct: 300 ILQLRL-GFNIVLYGLGSKRDLLEKFRTTMLQDSIHVVINGFFPGISVK 347
>sp|Q13416|ORC2_HUMAN Origin recognition complex subunit 2 OS=Homo sapiens GN=ORC2 PE=1
SV=2
Length = 577
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 13 IIQLEIENFNILLHGFGSKYKVINEFHKKMLSNSKVLVINGFFPDLTLK 61
++QL + FNI+L+G GSK ++ F ML +S +VINGFFP +++K
Sbjct: 302 MLQLHL-GFNIVLYGLGSKRDLLERFRTTMLQDSIHVVINGFFPGISVK 349
>sp|Q60862|ORC2_MOUSE Origin recognition complex subunit 2 OS=Mus musculus GN=Orc2 PE=1
SV=1
Length = 576
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 13 IIQLEIENFNILLHGFGSKYKVINEFHKKMLSNSKVLVINGFFPDLTLK 61
++QL + FNI+L+G GSK ++ +F ML +S +VING+FP +++K
Sbjct: 301 MLQLHL-GFNIVLYGLGSKRDLLEKFRTTMLQDSIHVVINGYFPGVSVK 348
>sp|Q91628|ORC2_XENLA Origin recognition complex subunit 2 OS=Xenopus laevis GN=orc2 PE=2
SV=1
Length = 558
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 13 IIQLEIENFNILLHGFGSKYKVINEFHKKMLSNSKVLVINGFFPDLTLK 61
++QL + FNI+L G GSK +I +F +L +S +VIN FFP +T K
Sbjct: 283 MLQLHL-GFNIILFGLGSKQSLIEKFRTSLLQDSLHIVINEFFPSITAK 330
>sp|A6QNM3|ORC2_BOVIN Origin recognition complex subunit 2 OS=Bos taurus GN=ORC2 PE=2
SV=2
Length = 577
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 21 FNILLHGFGSKYKVINEFHKKMLSNSKVLVINGFFPDLTLK 61
FNI+L+G GSK ++ F ML + +VINGFFP +++K
Sbjct: 310 FNIVLYGLGSKRDLLERFRTTMLQDCIHIVINGFFPGISVK 350
>sp|Q38899|ORC2_ARATH Origin recognition complex subunit 2 OS=Arabidopsis thaliana
GN=ORC2 PE=1 SV=1
Length = 363
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 21 FNILLHGFGSKYKVINEFHKKMLSNSKVLVINGFFPDLTLKE 62
F +L++GFGSK ++ +F L++ V+VING+ P + LK+
Sbjct: 83 FGLLMYGFGSKKALVEDFASASLTDYSVVVINGYLPSVNLKQ 124
>sp|Q09142|ORC2_SCHPO Origin recognition complex subunit 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=orc2 PE=1 SV=1
Length = 535
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 18 IENFNILLHGFGSKYKVINEFHKKMLSNSKVLVINGFFPDLTLK 61
+ NFN+L +GFGSK ++ F +K L + V+ G+FP L LK
Sbjct: 255 VNNFNLLFYGFGSKEHFLSSFVEKKLPCFPIFVVKGYFPQLQLK 298
>sp|Q55CU7|ORC2_DICDI Origin recognition complex subunit 2 OS=Dictyostelium discoideum
GN=orcB PE=3 SV=1
Length = 391
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 29/43 (67%)
Query: 20 NFNILLHGFGSKYKVINEFHKKMLSNSKVLVINGFFPDLTLKE 62
++++L+ GFGSK ++I F K+ ++ L G+ P+L++++
Sbjct: 95 DYSVLVSGFGSKIQLIETFVKEFCTDGPSLHFKGYLPNLSVRD 137
>sp|Q21037|ORC2_CAEEL Origin recognition complex subunit 2 OS=Caenorhabditis elegans
GN=orc-2 PE=2 SV=2
Length = 430
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 21 FNILLHGFGSKYKVINEFHKKM 42
FNILLHG GSK V+ EF ++
Sbjct: 159 FNILLHGVGSKRDVLTEFENEL 180
>sp|A9BF34|RL7_PETMO 50S ribosomal protein L7/L12 OS=Petrotoga mobilis (strain DSM 10674
/ SJ95) GN=rplL PE=3 SV=1
Length = 128
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 20 NFNILLHGFGSK----YKVINEFHKKMLSNSKVLVINGFFPDLTLKE 62
+F ++L GFG K KV+ E L +K LV PD +KE
Sbjct: 58 DFKVVLKGFGDKKIGVIKVVREITNLGLKEAKDLVEKAGTPDAVIKE 104
>sp|Q19UN5|CK5P2_PANTR CDK5 regulatory subunit-associated protein 2 OS=Pan troglodytes
GN=CDK5RAP2 PE=2 SV=1
Length = 1893
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 6 LKDIQNGIIQLEIENFNILLHGFGSKYKVINEFH 39
+KD +N I +L+ ENFN+ L + + ++ EFH
Sbjct: 60 MKDFENQITELKKENFNLKLRIYFLEERMQQEFH 93
>sp|Q96SN8|CK5P2_HUMAN CDK5 regulatory subunit-associated protein 2 OS=Homo sapiens
GN=CDK5RAP2 PE=1 SV=5
Length = 1893
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 6 LKDIQNGIIQLEIENFNILLHGFGSKYKVINEFH 39
+KD +N I +L+ ENFN+ L + + ++ EFH
Sbjct: 60 MKDFENQITELKKENFNLKLRIYFLEERMQQEFH 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.143 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,055,280
Number of Sequences: 539616
Number of extensions: 689070
Number of successful extensions: 1959
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1946
Number of HSP's gapped (non-prelim): 14
length of query: 62
length of database: 191,569,459
effective HSP length: 34
effective length of query: 28
effective length of database: 173,222,515
effective search space: 4850230420
effective search space used: 4850230420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)