RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy303
         (62 letters)



>gnl|CDD|217882 pfam04084, ORC2, Origin recognition complex subunit 2.  All DNA
          replication initiation is driven by a single conserved
          eukaryotic initiator complex termed he origin
          recognition complex (ORC). The ORC is a six protein
          complex. The function of ORC is reviewed in.
          Length = 318

 Score = 54.6 bits (132), Expect = 7e-11
 Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 19 ENFNILLHGFGSKYKVINEFHKKMLS-NSKVLVINGFFPDLTLKE 62
          + FN+L +G GSK  ++ +F K+ LS    V+V+NGFFP L +K+
Sbjct: 53 QGFNLLFYGLGSKRNLLEDFAKEYLSDKGPVVVVNGFFPSLNIKD 97


>gnl|CDD|227862 COG5575, ORC2, Origin recognition complex, subunit 2 [DNA
           replication, recombination, and repair].
          Length = 535

 Score = 40.4 bits (94), Expect = 1e-05
 Identities = 13/45 (28%), Positives = 25/45 (55%)

Query: 18  IENFNILLHGFGSKYKVINEFHKKMLSNSKVLVINGFFPDLTLKE 62
             +FN+L +G+GSK   + +F    L    +  +NG+ P ++ +E
Sbjct: 254 ARSFNLLFYGYGSKTAFLRKFFPSALPCFPIFYLNGYCPIMSRRE 298


>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
          Length = 450

 Score = 27.4 bits (62), Expect = 0.40
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 35  INEFHKKMLSNSKVLVINGF 54
           ++  ++  L N+ V +I GF
Sbjct: 95  LHGSYRNGLENNGVDLIEGF 114


>gnl|CDD|220109 pfam09094, DUF1925, Domain of unknown function (DUF1925).
          Members of this family, which are found in a set of
          prokaryotic transferases, adopt an
          immunoglobulin/albumin-binding domain-like fold, with a
          bundle of three alpha-helices. Their function is, as
          yet, unknown.
          Length = 78

 Score = 25.4 bits (56), Expect = 1.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 28 FGSKYKVINEFHKKMLSNSKVL 49
          F  KY   NE HK+ML  SK L
Sbjct: 6  FLVKYPESNEMHKRMLGVSKRL 27


>gnl|CDD|235491 PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.
          Length = 330

 Score = 25.8 bits (58), Expect = 1.4
 Identities = 8/12 (66%), Positives = 11/12 (91%), Gaps = 1/12 (8%)

Query: 1   MKKTILKDIQNG 12
           MK+ +LKDIQ+G
Sbjct: 275 MKE-VLKDIQSG 285


>gnl|CDD|112128 pfam03299, TF_AP-2, Transcription factor AP-2. 
          Length = 207

 Score = 25.1 bits (55), Expect = 2.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 14  IQLEIENFNILLHGFGS 30
           +Q  + +F+++ HGFGS
Sbjct: 165 LQNHLSHFSLITHGFGS 181


>gnl|CDD|173199 PRK14737, gmk, guanylate kinase; Provisional.
          Length = 186

 Score = 25.3 bits (55), Expect = 2.1
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 8/36 (22%)

Query: 2   KKTILKDIQNGIIQLEIENFNILLHGFGSKYKVINE 37
           +++I K I+NGII+L+  N           YK+IN+
Sbjct: 142 EESIEKRIENGIIELDEAN--------EFDYKIIND 169


>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with
           the periplasmic membrane in yeast.  This group contains
           members identified in targeting of yeast membrane
           proteins ATPase. AST1 is a cytoplasmic protein
           associated with the periplasmic membrane in yeast,
           identified as a multicopy suppressor of pma1 mutants
           which cause temperature sensitive growth arrest due to
           the inability of ATPase to target to the cell surface.
           This family is homologous to the medium chain family of
           dehydrogenases and reductases. Medium chain
           dehydrogenases/reductase (MDR)/zinc-dependent alcohol
           dehydrogenase-like family, which contains the
           zinc-dependent alcohol dehydrogenase (ADH-Zn) and
           related proteins, is a diverse group of proteins related
           to the first identified member, class I mammalian ADH.
           MDRs display a broad range of activities and are
           distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P) binding-Rossmann fold domain of an
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.
          Length = 352

 Score = 24.9 bits (55), Expect = 2.8
 Identities = 9/26 (34%), Positives = 18/26 (69%)

Query: 28  FGSKYKVINEFHKKMLSNSKVLVING 53
            G+ Y+++ +  +K+  +SKVLV+ G
Sbjct: 135 LGTAYQILEDLGQKLGPDSKVLVLGG 160


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.143    0.396 

Gapped
Lambda     K      H
   0.267   0.0702    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,146,684
Number of extensions: 231454
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 16
Length of query: 62
Length of database: 10,937,602
Length adjustment: 33
Effective length of query: 29
Effective length of database: 9,473,920
Effective search space: 274743680
Effective search space used: 274743680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)