RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy303
(62 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 0.45
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 2 KKTILKDIQNGIIQLEIENFNILLH---GFGSKYKVINEFHKKMLSNSKVLVINGF 54
+ LK ++ +++L N+L+ G G K V + + + KV F
Sbjct: 134 LQPYLK-LRQALLELRPAK-NVLIDGVLGSG-KTWVALD----VCLSYKVQCKMDF 182
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 1.0
Identities = 8/63 (12%), Positives = 24/63 (38%), Gaps = 20/63 (31%)
Query: 3 KTILKDI--QNGIIQLEIENFNILLHGFGSKY-------------KVINEFHKKMLSNSK 47
+ +++ + + G + +EI N+N+ +Y V+N + + +
Sbjct: 1827 QYVVERVGKRTGWL-VEIVNYNVE----NQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE 1881
Query: 48 VLV 50
+
Sbjct: 1882 LQK 1884
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 24.4 bits (54), Expect = 2.5
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 35 INEFHKKMLSNSKVLVINGF 54
+N ++ L+ S + +I G
Sbjct: 110 LNAIYQNNLTKSHIEIIRGH 129
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 24.4 bits (54), Expect = 2.7
Identities = 3/20 (15%), Positives = 11/20 (55%)
Query: 35 INEFHKKMLSNSKVLVINGF 54
+ ++K L+N+ +++
Sbjct: 95 LEGLYRKGLANAGAEILDTR 114
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 24.1 bits (53), Expect = 3.0
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 35 INEFHKKMLSNSKVLVINGF 54
+N ++ L KV+ N +
Sbjct: 132 LNWGYRVALREKKVVYENAY 151
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 24.0 bits (53), Expect = 3.2
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 35 INEFHKKMLSNSKVLVINGF 54
+N ++K L KV V+ G+
Sbjct: 107 LNGIYQKNLEKEKVDVVFGW 126
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic
amino acid biosynthesis, drug target, citrazinic acid,
S genomics; HET: D1X; 2.25A {Mycobacterium
tuberculosis} PDB: 3n59_A*
Length = 172
Score = 23.7 bits (52), Expect = 3.7
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 26 HGFGSKYKVINEFH-KKMLSNSKVLVINGFFPDLTL 60
H S + + + +S V VING P+L
Sbjct: 8 HHHSSGLQGTENLYFQSHMSELIVNVING--PNLGR 41
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 24.0 bits (53), Expect = 3.8
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 35 INEFHKKMLSNSKVLVINGF 54
+N + L + KV ING
Sbjct: 110 VNWVTRVDLRDKKVEYINGL 129
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 24.0 bits (53), Expect = 3.8
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 35 INEFHKKMLSNSKVLVINGF 54
IN F + + ++G
Sbjct: 94 INSFWDGYVERLGITRVDGH 113
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 24.0 bits (53), Expect = 3.9
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 35 INEFHKKMLSNSKVLVINGF 54
+ +++ L NS V +
Sbjct: 116 LEGLYREGLQNSNVHIYESR 135
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 23.6 bits (52), Expect = 4.4
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 35 INEFHKKMLSNSKVLVINGF 54
I+ ++ +L + V VI GF
Sbjct: 95 IHTSYENVLGKNNVDVIKGF 114
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 23.8 bits (52), Expect = 4.5
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 35 INEFHKKMLSNSKVLVINGF 54
+N +K L +++V +N
Sbjct: 208 LNWGYKVALRDNQVTYLNAK 227
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 23.7 bits (52), Expect = 4.5
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 35 INEFHKKMLSNSKVLVINGF 54
+N H+ L + KV N
Sbjct: 106 LNWGHRVQLQDRKVKYFNIK 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.143 0.396
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 930,584
Number of extensions: 42018
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 18
Length of query: 62
Length of database: 6,701,793
Length adjustment: 33
Effective length of query: 29
Effective length of database: 5,780,400
Effective search space: 167631600
Effective search space used: 167631600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.2 bits)