RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy303
         (62 letters)



>d1k1xa1 a.8.3.2 (A:311-384) 4-alpha-glucanotransferase, domain 2
          {Archaeon Thermococcus litoralis [TaxId: 2265]}
          Length = 74

 Score = 25.9 bits (57), Expect = 0.15
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 28 FGSKYKVINEFHKKMLSNSKVL 49
          F  KY   N  HK+ML  SK +
Sbjct: 6  FFFKYPESNFMHKRMLMVSKAV 27


>d1gtza_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase
          {Streptomyces coelicolor [TaxId: 1902]}
          Length = 149

 Score = 22.9 bits (49), Expect = 3.5
 Identities = 7/20 (35%), Positives = 15/20 (75%), Gaps = 2/20 (10%)

Query: 41 KMLSNSKVLVINGFFPDLTL 60
          + L+N+ ++++NG  P+L L
Sbjct: 1  RSLANAPIMILNG--PNLNL 18


>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos
          taurus) [TaxId: 9913]}
          Length = 279

 Score = 22.2 bits (47), Expect = 6.6
 Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 6/36 (16%)

Query: 23 ILLHGFGSKY------KVINEFHKKMLSNSKVLVIN 52
          ++ HG G           I +  +K +    VL + 
Sbjct: 9  VIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLE 44


>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 426

 Score = 22.0 bits (46), Expect = 6.7
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 32 YKVINEFHKKMLSNSKVLVI 51
          ++   E  + +L   KVLVI
Sbjct: 24 FEPSTESLQFLLDTCKVLVI 43


>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein
          MoeB {Escherichia coli [TaxId: 562]}
          Length = 247

 Score = 21.9 bits (45), Expect = 7.2
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 7/37 (18%)

Query: 15 QLEIENFNILLHGFGSKYKVINEFHKKMLSNSKVLVI 51
          ++   N  I+L GF        +  +  L +S+VL++
Sbjct: 7  EMLRYNRQIILRGFDF------DGQEA-LKDSRVLIV 36


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.143    0.396 

Gapped
Lambda     K      H
   0.267   0.0524    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 233,596
Number of extensions: 8536
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 5
Length of query: 62
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 30
Effective length of database: 1,968,236
Effective search space: 59047080
Effective search space used: 59047080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)