Query psy3030
Match_columns 116
No_of_seqs 129 out of 587
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 23:43:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02932 Neur_chan_memb: Neuro 99.3 4.4E-12 9.6E-17 89.4 6.0 61 21-81 177-237 (237)
2 KOG3646|consensus 99.2 3.1E-11 6.7E-16 100.8 7.5 61 26-88 425-485 (486)
3 TIGR00860 LIC Cation transport 99.2 2.7E-11 5.8E-16 101.1 4.8 58 24-82 400-457 (459)
4 KOG3645|consensus 98.3 4.6E-07 1E-11 75.7 4.1 48 23-70 401-448 (449)
5 PF13721 SecD-TM1: SecD export 75.4 1.3 2.8E-05 30.1 0.8 36 63-98 3-38 (101)
6 PRK13743 conjugal transfer pro 56.7 31 0.00068 25.0 4.8 36 44-80 20-55 (141)
7 KOG2678|consensus 48.6 81 0.0018 24.9 6.3 36 28-65 193-228 (244)
8 PF15586 Imm47: Immunity prote 39.0 32 0.00069 24.0 2.5 35 27-69 78-112 (116)
9 PF08372 PRT_C: Plant phosphor 36.7 1.1E+02 0.0025 22.4 5.3 50 26-81 56-112 (156)
10 PRK10629 EnvZ/OmpR regulon mod 35.7 26 0.00057 24.8 1.7 35 61-97 7-41 (127)
11 KOG4647|consensus 34.3 64 0.0014 25.6 3.8 27 55-81 97-123 (263)
12 PF08414 NADPH_Ox: Respiratory 34.2 1.1E+02 0.0023 21.1 4.4 33 25-64 7-39 (100)
13 PRK12933 secD preprotein trans 32.8 28 0.0006 30.9 1.7 39 60-98 9-47 (604)
14 PRK14762 membrane protein; Pro 32.4 46 0.00099 17.5 1.8 19 63-81 2-20 (27)
15 PF03993 DUF349: Domain of Unk 30.6 26 0.00056 21.6 0.9 33 28-60 37-72 (77)
16 cd00928 Cyt_c_Oxidase_VIIa Cyt 30.2 69 0.0015 19.7 2.7 24 59-82 25-48 (55)
17 PF06796 NapE: Periplasmic nit 29.2 58 0.0013 20.1 2.3 34 45-80 9-42 (56)
18 PF11616 EZH2_WD-Binding: WD r 26.7 86 0.0019 17.0 2.4 22 36-57 4-25 (30)
19 PF03408 Foamy_virus_ENV: Foam 26.1 55 0.0012 30.5 2.4 17 93-109 130-146 (981)
20 PF03908 Sec20: Sec20; InterP 24.9 1.2E+02 0.0026 19.7 3.4 23 59-81 66-88 (92)
21 PF11395 DUF2873: Protein of u 24.1 67 0.0015 18.4 1.7 21 65-85 12-32 (43)
22 PF06645 SPC12: Microsomal sig 23.0 1.7E+02 0.0037 18.7 3.8 39 58-96 28-66 (76)
23 COG4858 Uncharacterized membra 22.3 3.2E+02 0.007 21.2 5.7 64 46-115 154-225 (226)
24 TIGR02972 TMAO_torE trimethyla 21.7 1.9E+02 0.0042 17.2 3.8 31 48-80 4-34 (47)
25 PF11057 Cortexin: Cortexin of 20.3 1.2E+02 0.0026 20.0 2.6 20 64-83 35-54 (81)
No 1
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=99.31 E-value=4.4e-12 Score=89.43 Aligned_cols=61 Identities=41% Similarity=0.784 Sum_probs=52.3
Q ss_pred CCccHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy3030 21 RQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGII 81 (116)
Q Consensus 21 ~~~~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~ 81 (116)
....+.++++.++++++++|++++++.++.++||+++|+|+||+|+|+|.+++++++++++
T Consensus 177 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ew~~~A~viDR~~~~~F~i~f~~~~i~yw 237 (237)
T PF02932_consen 177 QSLSPSLRRILEGVRFIAEHLREQDEEEEIKEEWKFVAMVIDRLFRILFPIAFILFNIVYW 237 (237)
T ss_dssp TTGGG----HHHHHHHHHHHHHHHHHHHHHHHHHHSTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHhhhhcccceeecccccccccccccccccccHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 3455678999999999999999999999999999999999999999999999999988764
No 2
>KOG3646|consensus
Probab=99.22 E-value=3.1e-11 Score=100.85 Aligned_cols=61 Identities=33% Similarity=0.658 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccc
Q psy3030 26 EILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLY 88 (116)
Q Consensus 26 el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~ 88 (116)
++..+.+.++.+.++++++++++++++||||+|||+||+||.+|.++++++ +++..+|++.
T Consensus 425 ~~~~i~~~~~~~~~r~~~~~~~~~~~~dWkFAAmvVDRlCL~~Fs~fiii~--~i~~~~p~l~ 485 (486)
T KOG3646|consen 425 ELHLILKELRAILDRMEEDDKEEALQSDWKFAAMVVDRLCLLAFSVFIVMC--GILLSAPHLV 485 (486)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH--HHhhcCCccC
Confidence 567888999999999999999999999999999999999999999998888 8888888764
No 3
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=99.17 E-value=2.7e-11 Score=101.12 Aligned_cols=58 Identities=26% Similarity=0.494 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q psy3030 24 TPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIF 82 (116)
Q Consensus 24 ~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~ 82 (116)
.++++++.+++++| +|++++++.++.++|||++|+|+||+|+|+|.++++++++++++
T Consensus 400 ~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~W~~~a~viDr~~~~~f~~~~~~~~~~~~~ 457 (459)
T TIGR00860 400 DLDLAGILEEVRIA-HRFRKRDESEEVVRDWKFRAKVIDKLSRMAFPLAFLLFNIGYWM 457 (459)
T ss_pred CHHHHHHHhhhhHH-HHHHhhhhhhcccchhhhccchhhHHHHHHHHHHHHHhhhhheE
Confidence 46899999999999 99999999999999999999999999999999999999999876
No 4
>KOG3645|consensus
Probab=98.34 E-value=4.6e-07 Score=75.69 Aligned_cols=48 Identities=58% Similarity=0.998 Sum_probs=45.5
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy3030 23 LTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFT 70 (116)
Q Consensus 23 ~~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifl 70 (116)
..++++++.+.+++|+++++.++..++..+||+++|+|+||+|||+|+
T Consensus 401 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~w~~va~v~dr~~l~~f~ 448 (449)
T KOG3645|consen 401 LSPELRKAIEGVDFIAEHLKSEDNFQEIREDWKYVAMVLDRLLLWIFL 448 (449)
T ss_pred ccHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhhheEe
Confidence 667889999999999999999999999999999999999999999886
No 5
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=75.37 E-value=1.3 Score=30.13 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCccccCCCchhhhh
Q psy3030 63 RFFLCVFTAACVLGTCGIIFQAPSLYDNTAPIDIQM 98 (116)
Q Consensus 63 Rlfl~ifll~~~v~tl~i~~~~p~~~~~~~~~~~~~ 98 (116)
|.-.|.|+++.++-.++++...|++|...+.++|.-
T Consensus 3 ~yp~WKyllil~vl~~~~lyALPnlyge~pAvqIs~ 38 (101)
T PF13721_consen 3 RYPLWKYLLILVVLLLGALYALPNLYGEDPAVQISA 38 (101)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhhccCCCCcEEEec
Confidence 455788888777777777777899998877777644
No 6
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=56.73 E-value=31 Score=24.97 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=27.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy3030 44 ADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGI 80 (116)
Q Consensus 44 ~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i 80 (116)
+.+.++.+.|.++...+.|+. |++|+++.+.|.++.
T Consensus 20 e~KIrq~~rd~~y~~R~~~~Y-~~LfiVFl~AG~vLw 55 (141)
T PRK13743 20 ELKIRQTKRDYDYERRVSDIY-FDLFIVFLTAGIVLW 55 (141)
T ss_pred hHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHhhHHHH
Confidence 345667788999999999986 578888888787664
No 7
>KOG2678|consensus
Probab=48.57 E-value=81 Score=24.91 Aligned_cols=36 Identities=17% Similarity=0.360 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHH
Q psy3030 28 LSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFF 65 (116)
Q Consensus 28 ~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlf 65 (116)
..-.+++..-++++++.++... ..|-+++|++=-++
T Consensus 193 D~N~~~L~~~Serve~y~ksk~--s~wf~~~miI~v~~ 228 (244)
T KOG2678|consen 193 DVNSQGLMDVSERVEKYDKSKL--SYWFYITMIIFVIL 228 (244)
T ss_pred hHHHHHHHhhhHHHHHHHHhhh--hHHHHHHHHHHHHH
Confidence 3334455555566555544433 67888887654333
No 8
>PF15586 Imm47: Immunity protein 47
Probab=39.03 E-value=32 Score=23.96 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy3030 27 ILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVF 69 (116)
Q Consensus 27 l~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~if 69 (116)
..+|.+.|+.+.++... ++|..+|..|.|+|.|=|
T Consensus 78 ~~~I~~~i~~~i~~c~~--------~~W~~~~~kLsr~f~WEf 112 (116)
T PF15586_consen 78 YDEIKKTIERIIESCEG--------DDWDEIAEKLSRYFAWEF 112 (116)
T ss_pred HHHHHHHHHHHHHHccC--------CCHHHHHHHHHHheeeec
Confidence 45566666666655532 679999999999998854
No 9
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=36.69 E-value=1.1e+02 Score=22.40 Aligned_cols=50 Identities=12% Similarity=0.371 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhhh-------hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy3030 26 EILSAFEGVRFIAQHIKD-------ADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGII 81 (116)
Q Consensus 26 el~~i~~~vr~I~~~~~~-------~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~ 81 (116)
.++.=.+.++.++.+.+. +-+.=+..-.|+ |...-++|++++++.+++++
T Consensus 56 ~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWr------dP~aT~lf~~~clv~avvly 112 (156)
T PF08372_consen 56 SLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWR------DPRATALFVVFCLVAAVVLY 112 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CccHHHHHHHHHHHHHHHHH
Confidence 344444455555555443 333333344454 33334455555555554433
No 10
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=35.69 E-value=26 Score=24.77 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCccccCCCchhhh
Q psy3030 61 LDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPIDIQ 97 (116)
Q Consensus 61 lDRlfl~ifll~~~v~tl~i~~~~p~~~~~~~~~~~~ 97 (116)
+-|.-+|.|+++.++-. ++...|++|.....++|.
T Consensus 7 ~nryp~WKylli~~vl~--~lyAlPnlygedpavQIs 41 (127)
T PRK10629 7 SLRQLAWLGAVLLLLAA--LLLAWSALRQQESTLAIR 41 (127)
T ss_pred ccccHHHHHHHHHHHHH--HHHHChhccCCCceEEEe
Confidence 45666777765544444 566668888777776664
No 11
>KOG4647|consensus
Probab=34.30 E-value=64 Score=25.58 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy3030 55 KYVSMVLDRFFLCVFTAACVLGTCGII 81 (116)
Q Consensus 55 k~vA~VlDRlfl~ifll~~~v~tl~i~ 81 (116)
+++|..+|-++++.|-++++.|++-++
T Consensus 97 R~~AE~IDffilf~~K~~Iv~g~~~l~ 123 (263)
T KOG4647|consen 97 RLLAELIDFFILFSFKLAIVGGTLSLL 123 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 578999999999998888888777665
No 12
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=34.25 E-value=1.1e+02 Score=21.12 Aligned_cols=33 Identities=27% Similarity=0.572 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH
Q psy3030 25 PEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRF 64 (116)
Q Consensus 25 ~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRl 64 (116)
+-...++++|++|+..... .+.|+.|-.-.|.+
T Consensus 7 S~A~~ALkGLrFIskt~~~-------~~~W~~VE~RFd~L 39 (100)
T PF08414_consen 7 SGAQRALKGLRFISKTTGG-------ADGWKEVEKRFDKL 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred hHHHHHHhcccceecCCCC-------ccCHHHHHHHHHHh
Confidence 3457889999999988665 23499999988876
No 13
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=32.83 E-value=28 Score=30.94 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCCccccCCCchhhhh
Q psy3030 60 VLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPIDIQM 98 (116)
Q Consensus 60 VlDRlfl~ifll~~~v~tl~i~~~~p~~~~~~~~~~~~~ 98 (116)
.+.|.=+|.|+++.++-.++++...|++|...+.+|+.-
T Consensus 9 m~n~yp~wky~~i~~~l~~~~lyalPn~y~~~pavqis~ 47 (604)
T PRK12933 9 LLNHYSAWKYVVLIVTIIILLLSAIPTWYGEDAAVQVSA 47 (604)
T ss_pred hhccChhHHHHHHHHHHHHHHHHhChhccCCCCeEEEec
Confidence 477888999999999888999999999998877777643
No 14
>PRK14762 membrane protein; Provisional
Probab=32.37 E-value=46 Score=17.45 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q psy3030 63 RFFLCVFTAACVLGTCGII 81 (116)
Q Consensus 63 Rlfl~ifll~~~v~tl~i~ 81 (116)
++.+|+-.+.+.+|.++++
T Consensus 2 ki~lw~i~iifligllvvt 20 (27)
T PRK14762 2 KIILWAVLIIFLIGLLVVT 20 (27)
T ss_pred eeHHHHHHHHHHHHHHHHH
Confidence 3567777766666655543
No 15
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=30.58 E-value=26 Score=21.56 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhh---hhhhhhhhhhhHHHHHHH
Q psy3030 28 LSAFEGVRFIAQHIK---DADKDNEIVEDWKYVSMV 60 (116)
Q Consensus 28 ~~i~~~vr~I~~~~~---~~d~~~~~~~EWk~vA~V 60 (116)
+.+++.++.+..... ..+..++++++|+.++.|
T Consensus 37 ~~Li~~~~~l~~~~d~~~~~~~~k~l~~~Wk~iG~v 72 (77)
T PF03993_consen 37 EALIEEAEALAESEDWKEAAEEIKELQQEWKEIGPV 72 (77)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCC
Confidence 345555555555442 345666778888877643
No 16
>cd00928 Cyt_c_Oxidase_VIIa Cytochrome c oxidase subunit VIIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIIa has two tissue-specific isoforms that are expressed in a developmental manner. VIIa-H is expressed in heart and skeletal muscle but not smooth muscle. VIIa-L is expressed in liver and non-muscle tissues.
Probab=30.21 E-value=69 Score=19.66 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhc
Q psy3030 59 MVLDRFFLCVFTAACVLGTCGIIF 82 (116)
Q Consensus 59 ~VlDRlfl~ifll~~~v~tl~i~~ 82 (116)
-+.|++++.+-+..+++|+...+.
T Consensus 25 G~~D~~LYr~Tm~L~~vG~~~~~~ 48 (55)
T cd00928 25 GVVDRILYRLTMALTVVGTGYSLY 48 (55)
T ss_pred CchhHHHHHHHHHHHHHhHHHHHH
Confidence 378999999888888888876543
No 17
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=29.22 E-value=58 Score=20.09 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=18.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy3030 45 DKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGI 80 (116)
Q Consensus 45 d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i 80 (116)
+..++...||+.. .+=-+++|-.+.+.+++.-++
T Consensus 9 ~~~~~k~~E~~~f--lfl~~~l~PiL~v~~Vg~YGF 42 (56)
T PF06796_consen 9 SDKSTKRSELKAF--LFLAVVLFPILAVAFVGGYGF 42 (56)
T ss_pred cccchhHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3466778899843 333344455555555555443
No 18
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=26.66 E-value=86 Score=16.99 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=15.6
Q ss_pred HHHHHhhhhhhhhhhhhhHHHH
Q psy3030 36 FIAQHIKDADKDNEIVEDWKYV 57 (116)
Q Consensus 36 ~I~~~~~~~d~~~~~~~EWk~v 57 (116)
|.+++.+-+++-+-..+||+..
T Consensus 4 f~sNr~Ki~e~t~iLN~eWk~l 25 (30)
T PF11616_consen 4 FSSNRQKIQERTDILNEEWKKL 25 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHhhHHHHHHHHHHHHHHHHHh
Confidence 5566666677777788999853
No 19
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=26.08 E-value=55 Score=30.45 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=13.1
Q ss_pred chhhhhhhhhccCCCCC
Q psy3030 93 PIDIQMTRITQYGISSP 109 (116)
Q Consensus 93 ~~~~~~~~~~~~~~~~~ 109 (116)
+++++|+.+|.|-++.|
T Consensus 130 ~VeVN~TsIPQGv~~~P 146 (981)
T PF03408_consen 130 YVEVNMTSIPQGVFYEP 146 (981)
T ss_pred eeEEeeccCCcceeecC
Confidence 77888889988866554
No 20
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=24.90 E-value=1.2e+02 Score=19.69 Aligned_cols=23 Identities=17% Similarity=0.053 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Q psy3030 59 MVLDRFFLCVFTAACVLGTCGII 81 (116)
Q Consensus 59 ~VlDRlfl~ifll~~~v~tl~i~ 81 (116)
...|++++|.-+++++...+.|+
T Consensus 66 ~~~D~~li~~~~~~f~~~v~yI~ 88 (92)
T PF03908_consen 66 DKTDRILIFFAFLFFLLVVLYIL 88 (92)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHh
Confidence 35688887755544444444443
No 21
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=24.05 E-value=67 Score=18.45 Aligned_cols=21 Identities=14% Similarity=-0.009 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhhhhhhccCC
Q psy3030 65 FLCVFTAACVLGTCGIIFQAP 85 (116)
Q Consensus 65 fl~ifll~~~v~tl~i~~~~p 85 (116)
|+..|+++.++.-+.||+-..
T Consensus 12 c~l~~llflv~imliif~f~l 32 (43)
T PF11395_consen 12 CFLSFLLFLVIIMLIIFWFSL 32 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555665433
No 22
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=23.04 E-value=1.7e+02 Score=18.67 Aligned_cols=39 Identities=10% Similarity=0.171 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCccccCCCchhh
Q psy3030 58 SMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPIDI 96 (116)
Q Consensus 58 A~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~~~~~~~~ 96 (116)
+.+.+.+..-+|.....+....+++-++--+-+++|+.+
T Consensus 28 Gy~~q~~~~~~~~~~~g~~~~~lv~vP~Wp~y~r~p~~W 66 (76)
T PF06645_consen 28 GYITQSFSYTFYIYGAGVVLTLLVVVPPWPFYNRHPLKW 66 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeCCcHhhcCCcccC
Confidence 445555554444433222222233333433446777766
No 23
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=22.35 E-value=3.2e+02 Score=21.20 Aligned_cols=64 Identities=16% Similarity=0.320 Sum_probs=38.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccccCCCchhhhhhhhhc--------cCCCCCCCCCCC
Q psy3030 46 KDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPIDIQMTRITQ--------YGISSPPTVAPR 115 (116)
Q Consensus 46 ~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 115 (116)
+..+.-.-||.++-.+-.+++|++..+. ..|+ +++.....+|+...+.+--. .+.|.+-+..||
T Consensus 154 d~sqr~~~~K~~lv~~~sm~lWi~v~i~-----t~~l-PtslN~~L~pi~l~IiGav~lalRfylkkk~NIqsa~~p~ 225 (226)
T COG4858 154 DNSQRPGTWKYLLVAVLSMLLWIAVMIA-----TVFL-PTSLNPQLPPIALTIIGAVILALRFYLKKKKNIQSALVPR 225 (226)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHH-----HhhC-CCcCCcCCchHHHHHHHHHHHHHHHHHHHhhccccccCCC
Confidence 3355677899999999999999877521 1222 24455555677665554221 245555555554
No 24
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=21.71 E-value=1.9e+02 Score=17.19 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=17.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy3030 48 NEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGI 80 (116)
Q Consensus 48 ~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i 80 (116)
++...||+ +...=-+++|-.+.+.+++.-++
T Consensus 4 ~~k~~El~--~flfl~v~l~PiLsV~~Vg~YGF 34 (47)
T TIGR02972 4 SKRSNELK--ALGFIIVVLFPILSVAGIGGYGF 34 (47)
T ss_pred chhHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888 33333445555555555555443
No 25
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=20.28 E-value=1.2e+02 Score=19.99 Aligned_cols=20 Identities=20% Similarity=0.482 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhhhhhhcc
Q psy3030 64 FFLCVFTAACVLGTCGIIFQ 83 (116)
Q Consensus 64 lfl~ifll~~~v~tl~i~~~ 83 (116)
.++++|+.+.++..+-|++.
T Consensus 35 ~~L~~fL~~liVRCfrIllD 54 (81)
T PF11057_consen 35 GLLCLFLGLLIVRCFRILLD 54 (81)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 46678888888888888875
Done!