Query psy3030
Match_columns 116
No_of_seqs 129 out of 587
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 23:44:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3030.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3030hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oed_B Acetylcholine receptor 99.8 7.6E-20 2.6E-24 141.5 1.9 69 23-91 181-249 (250)
2 1oed_C Acetylcholine receptor 99.7 6.4E-20 2.2E-24 142.6 -1.1 68 23-90 191-258 (260)
3 4aq5_E Acetylcholine receptor 99.7 8E-19 2.7E-23 145.7 3.9 73 23-95 408-480 (488)
4 1oed_E Acetylcholine receptor 99.7 1.7E-19 5.8E-24 140.2 -0.3 67 23-89 191-257 (260)
5 4aq5_B Acetylcholine receptor 99.7 3E-18 1E-22 142.4 2.2 73 22-94 420-492 (493)
6 4aq5_C Acetylcholine receptor 99.7 1.4E-18 4.8E-23 145.4 -0.1 73 23-95 436-508 (522)
7 1oed_A Acetylcholine receptor 99.6 5.3E-17 1.8E-21 124.0 1.4 61 24-84 159-219 (227)
8 4aq5_A Acetylcholine receptor 99.6 3.1E-16 1.1E-20 129.5 1.0 66 23-88 392-457 (461)
9 2bg9_B Acetylcholine receptor 99.4 1.2E-13 4.1E-18 110.6 3.8 65 30-94 305-369 (370)
10 2bg9_C Acetylcholine receptor 99.3 9.7E-13 3.3E-17 105.3 3.8 62 30-91 307-368 (369)
11 2bg9_E Acetylcholine receptor 99.2 3.1E-12 1.1E-16 102.3 4.1 60 30-89 309-368 (370)
12 2bg9_A Acetylcholine receptor 99.1 3.4E-11 1.2E-15 96.2 2.6 55 29-83 307-361 (370)
13 2ksr_A Neuronal acetylcholine 98.1 8.6E-07 3E-11 64.5 2.7 34 54-88 129-162 (164)
14 2lly_A Neuronal acetylcholine 97.4 0.00013 4.4E-09 51.3 3.5 31 58-89 106-136 (137)
15 2ljb_A M2 protein, BM2 protein 27.6 35 0.0012 18.2 1.8 17 51-67 16-32 (35)
16 3kdp_B Sodium/potassium-transp 20.1 1.2E+02 0.0042 23.1 4.3 23 64-86 23-45 (286)
No 1
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=99.76 E-value=7.6e-20 Score=141.46 Aligned_cols=69 Identities=33% Similarity=0.681 Sum_probs=32.0
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccccCC
Q psy3030 23 LTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNT 91 (116)
Q Consensus 23 ~~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~~~ 91 (116)
..++++++++++++|++|++++|+++++++|||+||||+||+|||+|++++++||++||+++|+.+++.
T Consensus 181 ~~~~l~~~~~~v~~Ia~~~~~~d~~~~~~~dWk~vAmVlDRlfL~iF~i~~i~gT~~I~l~ap~~~~~~ 249 (250)
T 1oed_B 181 LPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYVFFVICSIGTFSIFLDASHNVPPD 249 (250)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred cCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC
Confidence 456899999999999999999999999999999999999999999999999999999999999987753
No 2
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=99.74 E-value=6.4e-20 Score=142.57 Aligned_cols=68 Identities=28% Similarity=0.420 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccccC
Q psy3030 23 LTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDN 90 (116)
Q Consensus 23 ~~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~~ 90 (116)
..++++++++++++|++|++++|+.+++++|||+||||+||+|||+|++++++||++||+++|+.+++
T Consensus 191 ~~~~l~~~~~~v~~Ia~~~~~~d~~~~~~~dWk~vAmVlDRlfL~iF~i~~i~gT~~I~l~ap~~~~~ 258 (260)
T 1oed_C 191 LHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNFNHPP 258 (260)
T ss_dssp -----------------------------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccC
Confidence 45689999999999999999999999999999999999999999999999999999999999987654
No 3
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=99.73 E-value=8e-19 Score=145.72 Aligned_cols=73 Identities=25% Similarity=0.377 Sum_probs=60.4
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccccCCCchh
Q psy3030 23 LTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPID 95 (116)
Q Consensus 23 ~~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~~~~~~~ 95 (116)
..+++++++++++||++|++++++.+++++|||+||||+||+|||+|++++++||++||+++++.+.++.|+.
T Consensus 408 ~~~~~~~~~~~v~~ia~~~~~~~~~~~~~~dWk~va~V~DR~~l~~f~~~~~~gt~~i~~~~~~~~~~~~p~~ 480 (488)
T 4aq5_E 408 FAPEIKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSLGTLAIFLTGHLNQVPEFPFP 480 (488)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----
T ss_pred cCHHHHHHHHHHHHHHHHHhhhhHHhhhhhcceEEEeeHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Confidence 5678999999999999999999999999999999999999999999999999999999999998887777664
No 4
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=99.73 E-value=1.7e-19 Score=140.18 Aligned_cols=67 Identities=24% Similarity=0.378 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcccc
Q psy3030 23 LTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYD 89 (116)
Q Consensus 23 ~~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~ 89 (116)
..++++++++++++|++|++++|+.+++++|||+||||+||+|||+|++++++||++||+++|+.++
T Consensus 191 ~~~~l~~~~~~v~~Ia~~~~~~d~~~~~~~dWk~vAmVlDRlfL~iF~i~~i~gT~~I~l~ap~~~~ 257 (260)
T 1oed_E 191 FAPEIKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSIGTLAIFLTGHFNQV 257 (260)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 4468999999999999999999999999999999999999999999999999999999999988764
No 5
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=99.69 E-value=3e-18 Score=142.42 Aligned_cols=73 Identities=32% Similarity=0.691 Sum_probs=62.7
Q ss_pred CccHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccccCCCch
Q psy3030 22 QLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPI 94 (116)
Q Consensus 22 ~~~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~~~~~~ 94 (116)
...++++++++++++|++|++++++.+++++|||+||||+||+|||+|++++++||++||+++++.+.++.|+
T Consensus 420 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~dWk~va~V~DR~~l~~f~~~~~~gt~~i~~~~~~~~~~~~p~ 492 (493)
T 4aq5_B 420 TLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASHNVPPDNPF 492 (493)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSSSSTTC
T ss_pred ccCHHHHHHHHHHHHHHHHHHhhhHhhhhhcceEEEEEehhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Confidence 3567899999999999999999999999999999999999999999999999999999999998877776664
No 6
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=99.69 E-value=1.4e-18 Score=145.35 Aligned_cols=73 Identities=27% Similarity=0.446 Sum_probs=62.4
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccccCCCchh
Q psy3030 23 LTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPID 95 (116)
Q Consensus 23 ~~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~~~~~~~ 95 (116)
..+++++++++++||++|++++++.+++++|||+||||+||+|||+|++++++||++||+++++.+.++.|++
T Consensus 436 ~~~~~~~~~~~v~~ia~~~~~~~~~~~~~~dWk~va~V~DRl~l~~f~~~~~~gt~~i~~~~~~~~~~~~p~~ 508 (522)
T 4aq5_C 436 LHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNFNRPPAKPFE 508 (522)
T ss_dssp ------CCTTTTTHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCC---
T ss_pred cCHHHHHHHHHHHHHHHHHhhhhhhhhhccceeEeeeeHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Confidence 4578999999999999999999999999999999999999999999999999999999999999888877775
No 7
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B
Probab=99.62 E-value=5.3e-17 Score=123.97 Aligned_cols=61 Identities=41% Similarity=0.926 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Q psy3030 24 TPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQA 84 (116)
Q Consensus 24 ~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~ 84 (116)
+++++++++++++|++|++++|++++.++|||++|+|+||+|||+|++++++||++||+++
T Consensus 159 ~~~l~~~~~~v~~I~~~~~~~~~~~~~~~dWk~vA~VlDRl~l~iF~~~~i~gT~~i~~~~ 219 (227)
T 1oed_A 159 NPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAGR 219 (227)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4689999999999999999999999999999999999999999999999999999999874
No 8
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=99.57 E-value=3.1e-16 Score=129.46 Aligned_cols=66 Identities=38% Similarity=0.810 Sum_probs=57.2
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccc
Q psy3030 23 LTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLY 88 (116)
Q Consensus 23 ~~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~ 88 (116)
..++++++++++++|++|++++++.+++++|||+||+|+||+|||+|++++++||++||+++++.+
T Consensus 392 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~dWk~va~v~Dr~~l~~f~~~~~~gt~~i~~~~~~~~ 457 (461)
T 4aq5_A 392 KNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAGRLIEL 457 (461)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhhHHHHhhhhhheeeeeeHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 457899999999999999999999999999999999999999999999999999999999876543
No 9
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.39 E-value=1.2e-13 Score=110.58 Aligned_cols=65 Identities=34% Similarity=0.737 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccccCCCch
Q psy3030 30 AFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPI 94 (116)
Q Consensus 30 i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~~~~~~ 94 (116)
+++++++|+++++++++.++.++||+++|+|+||+|||+|+++++++|++|++++|+.++++.|+
T Consensus 305 ~~~~~~~i~~~~~~~~~~~~~~~~W~~~a~v~Dr~~~~~f~~~~~~~t~~i~~~~~~~~~~~~~~ 369 (370)
T 2bg9_B 305 AVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASHNVPPDNPF 369 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCCC
T ss_pred chhhHHHHHHHHHhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCC
Confidence 67789999999999999999999999999999999999999999999999999999998887765
No 10
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.30 E-value=9.7e-13 Score=105.28 Aligned_cols=62 Identities=24% Similarity=0.409 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccccCC
Q psy3030 30 AFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNT 91 (116)
Q Consensus 30 i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~~~ 91 (116)
+++++++|+++++++++.++.++||+++|+|+||+|||+|+++++++|++|++++|+.++++
T Consensus 307 ~~~~~~~i~~~~~~~~~~~~~~~~W~~~a~vlDr~~~~~f~~~~~~~~~~i~~~~~~~~~~~ 368 (369)
T 2bg9_C 307 GIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNFNRPPA 368 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC
Confidence 57789999999999999999999999999999999999999999999999999999887654
No 11
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.25 E-value=3.1e-12 Score=102.30 Aligned_cols=60 Identities=22% Similarity=0.333 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcccc
Q psy3030 30 AFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYD 89 (116)
Q Consensus 30 i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~ 89 (116)
+++++++|+++++++++.++.++||+++|+|+||+|||+|.++++++|++||+++|+.++
T Consensus 309 ~~~~~~~i~~~~~~~~~~~~~~~~W~~~a~vlDr~~~~~f~~~~~~~t~~i~~~~~~~~~ 368 (370)
T 2bg9_E 309 CVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSLGTLAIFLTGHLNQV 368 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC
Confidence 677899999999999999999999999999999999999999999999999999888754
No 12
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.08 E-value=3.4e-11 Score=96.22 Aligned_cols=55 Identities=44% Similarity=0.959 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q psy3030 29 SAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQ 83 (116)
Q Consensus 29 ~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~ 83 (116)
++.+++++|+++++++++.++.++||+++|+|+||+|||+|.++++++|+++|++
T Consensus 307 ~~~~~~~~i~~~~~~~~~~~~~~~~W~~~a~vlDr~~~~~f~~~~~~~t~~i~~~ 361 (370)
T 2bg9_A 307 SAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAG 361 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678899999999999999999999999999999999999999999999999975
No 13
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=98.15 E-value=8.6e-07 Score=64.47 Aligned_cols=34 Identities=47% Similarity=0.906 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccc
Q psy3030 54 WKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLY 88 (116)
Q Consensus 54 Wk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~ 88 (116)
+|++|+|+||+|+|+|.++++++|++|+++ |+.+
T Consensus 129 ~k~~a~v~Dr~~l~~f~~~~~~~t~~i~~~-p~~~ 162 (164)
T 2ksr_A 129 GGYVAMVIDRLFLWIFVFVCVFGTIGMFLQ-PLFQ 162 (164)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHHHHHHHHHT-TTSC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHheec-cccc
Confidence 599999999999999999999999999988 6654
No 14
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=97.36 E-value=0.00013 Score=51.34 Aligned_cols=31 Identities=39% Similarity=0.741 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCcccc
Q psy3030 58 SMVLDRFFLCVFTAACVLGTCGIIFQAPSLYD 89 (116)
Q Consensus 58 A~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~ 89 (116)
++|+||+|+|+|.+++++||++++++ |+.++
T Consensus 106 ~~~~dr~~lwif~~~~~~gt~~i~~~-p~~~~ 136 (137)
T 2lly_A 106 GGGIDRIFLWMFIIVCLLGTVGLFLP-PWLAG 136 (137)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHCC-STTTC
T ss_pred hHHHHHHHHHHHHHHHHHhhhhheec-ccccC
Confidence 48999999999999999999999998 77654
No 15
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=27.60 E-value=35 Score=18.25 Aligned_cols=17 Identities=0% Similarity=0.128 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHHHHH
Q psy3030 51 VEDWKYVSMVLDRFFLC 67 (116)
Q Consensus 51 ~~EWk~vA~VlDRlfl~ 67 (116)
.+=|.++.-++||+||.
T Consensus 16 igiLHlilWildrLff~ 32 (35)
T 2ljb_A 16 IGILHFIAWTIGHLNQI 32 (35)
T ss_dssp HHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhhhhHhh
Confidence 34467778889999874
No 16
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=20.12 E-value=1.2e+02 Score=23.13 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhhhhhhccCCc
Q psy3030 64 FFLCVFTAACVLGTCGIIFQAPS 86 (116)
Q Consensus 64 lfl~ifll~~~v~tl~i~~~~p~ 86 (116)
+.|+.|+..+++.++.+++++..
T Consensus 23 liFY~~La~lFa~~m~v~l~TLd 45 (286)
T 3kdp_B 23 VIFYGCLAGIFIGTIQVMLLTIS 45 (286)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCc
Confidence 34555666677777777765443
Done!