RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3030
         (116 letters)



>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 250

 Score = 81.7 bits (201), Expect = 7e-21
 Identities = 24/69 (34%), Positives = 40/69 (57%)

Query: 20  PRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCG 79
           P  L  ++  A E +++IA+ ++ A + +++ +DW+YV+MV DR FL VF   C +GT  
Sbjct: 178 PVTLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYVFFVICSIGTFS 237

Query: 80  IIFQAPSLY 88
           I   A    
Sbjct: 238 IFLDASHNV 246


>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score = 81.4 bits (200), Expect = 1e-20
 Identities = 20/65 (30%), Positives = 30/65 (46%)

Query: 20  PRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCG 79
             QL  EI S  +   +I + IK+ +  +E V +W  V   +DR  + + T   VLGT  
Sbjct: 188 SDQLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIF 247

Query: 80  IIFQA 84
           I    
Sbjct: 248 IFVMG 252


>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score = 77.9 bits (191), Expect = 3e-19
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 21  RQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGI 80
               PEI S  E   FIA+  K+ +      E+W  +  V+D+    +      +GT  I
Sbjct: 189 ANFAPEIKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSIGTLAI 248

Query: 81  IFQAPSLYDNTAP 93
                  + N  P
Sbjct: 249 FLTG---HFNQVP 258


>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 227

 Score = 69.0 bits (168), Expect = 4e-16
 Identities = 26/64 (40%), Positives = 41/64 (64%)

Query: 20  PRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCG 79
           P    P++ SA EGV++IA+H+K  ++ +   E+WKYV+MV+D   LCVF   C++GT  
Sbjct: 155 PLIKNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVS 214

Query: 80  IIFQ 83
           +   
Sbjct: 215 VFAG 218


>d1to6a_ c.141.1.1 (A:) Glycerate kinase GlxK {Neisseria
          meningitidis, (serogroup A) [TaxId: 487]}
          Length = 371

 Score = 23.7 bits (51), Expect = 7.7
 Identities = 6/26 (23%), Positives = 12/26 (46%)

Query: 26 EILSAFEGVRFIAQHIKDADKDNEIV 51
          E L+A +    I +  + +  D E +
Sbjct: 12 ESLTAQQVAEAIKRGFQQSIADVECL 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 433,012
Number of extensions: 17903
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 6
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)