BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3031
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%)
Query: 1 MSFRVVRSSKFRHVYGTALKREFCYDNIRVSKSSWDSTFCAVNPKFLAIIVESAGGGAFI 60
MS +VVRSSKFRHV+G K + CY+++RVS+++WDS FCAVNPKF+A+I E++GGGAF+
Sbjct: 1 MSRQVVRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALIXEASGGGAFL 60
Query: 61 VLPLNKS 67
VLPL K+
Sbjct: 61 VLPLGKT 67
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 113 FDTSNGVMFPLYDPDTNLVYLCGK 136
DTS+GV+ P +DPDTN+VYLCGK
Sbjct: 264 LDTSSGVLLPFFDPDTNIVYLCGK 287
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%)
Query: 1 MSFRVVRSSKFRHVYGTALKREFCYDNIRVSKSSWDSTFCAVNPKFLAIIVESAGGGAFI 60
MS +VVRSSKFRHV+G K + CY+++RVS+++WDS FCAVNPKF+A+I E++GGGAF+
Sbjct: 1 MSRQVVRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFL 60
Query: 61 VLPLNKS 67
VLPL K+
Sbjct: 61 VLPLGKT 67
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 113 FDTSNGVMFPLYDPDTNLVYLCGK 136
DTS+GV+ P +DPDTN+VYLCGK
Sbjct: 264 LDTSSGVLLPFFDPDTNIVYLCGK 287
>pdb|1BFO|A Chain A, Campath-1g Igg2b Rat Monoclonal Fab
pdb|1BFO|C Chain C, Campath-1g Igg2b Rat Monoclonal Fab
pdb|1BFO|E Chain E, Campath-1g Igg2b Rat Monoclonal Fab
pdb|1BFO|G Chain G, Campath-1g Igg2b Rat Monoclonal Fab
Length = 214
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 88 AGGGAFIVLPLNKYHPA-LAVEWSLTFDTSNGVMFPLYDPDT 128
A GGA +V +NK++P ++V+W + NGV+ + D D+
Sbjct: 126 ATGGASVVCLMNKFYPRDISVKWKIDGTERNGVLNSVTDQDS 167
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 29.3 bits (64), Expect = 0.67, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 57 GAFIVLPLNKSSWDSTFCAVNP 78
G IV PLNKS WD A P
Sbjct: 408 GQLIVYPLNKSMWDDGMSAATP 429
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 29.3 bits (64), Expect = 0.70, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 57 GAFIVLPLNKSSWDSTFCAVNP 78
G IV PLNKS WD A P
Sbjct: 408 GPLIVYPLNKSMWDDGMSAATP 429
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
pdb|3BW7|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-1
pdb|3C0P|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-8
pdb|3DQ0|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH
N6-(3-Methoxy- Phenyl)adenine
pdb|3S1C|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH N6-
Isopentenyladenosine
Length = 516
Score = 29.3 bits (64), Expect = 0.70, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 57 GAFIVLPLNKSSWDSTFCAVNP 78
G IV PLNKS WD A P
Sbjct: 408 GPLIVYPLNKSMWDDGMSAATP 429
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenosine
Length = 516
Score = 29.3 bits (64), Expect = 0.71, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 57 GAFIVLPLNKSSWDSTFCAVNP 78
G IV PLNKS WD A P
Sbjct: 408 GPLIVYPLNKSMWDDGMSAATP 429
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Benzylurea Inhibitor Cpbu
pdb|3KJM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
Length = 516
Score = 29.3 bits (64), Expect = 0.71, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 57 GAFIVLPLNKSSWDSTFCAVNP 78
G IV PLNKS WD A P
Sbjct: 408 GPLIVYPLNKSMWDDGMSAATP 429
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase
pdb|1W1Q|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Isopentenyladenine
pdb|1W1R|A Chain A, Plant Cytokinin Dehydrogenase In Complex With Trans-zeatin
pdb|1W1S|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Benzylaminopurine
Length = 534
Score = 29.3 bits (64), Expect = 0.72, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 57 GAFIVLPLNKSSWDSTFCAVNP 78
G IV PLNKS WD A P
Sbjct: 426 GPLIVYPLNKSMWDDGMSAATP 447
>pdb|1IGC|L Chain L, Igg1 Fab Fragment (Mopc21) Complex With Domain Iii Of
Protein G From Streptococcus
Length = 213
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 90 GGAFIVLPLNKYHPA-LAVEWSLTFDTSNGVMFPLYDPDT 128
GGA +V LN ++P + V+W + + NGV+ D D+
Sbjct: 128 GGASVVCFLNNFYPKDINVKWKIDSERQNGVLNSWTDQDS 167
>pdb|1ZAN|L Chain L, Crystal Structure Of Anti-Ngf Ad11 Fab
Length = 214
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 88 AGGGAFIVLPLNKYHPA-LAVEWSLT-FDTSNGVMFPLYDPDT 128
A GGA +V LN ++P ++V+W + + NGV+ + D D+
Sbjct: 126 ASGGASVVCLLNNFYPKDISVKWKIDGSERQNGVLDSVTDQDS 168
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 77 NPKFLAIIVESAGGGAFIVLPLNKYHPALA 106
+P A IVE G A +++P + Y P +A
Sbjct: 191 DPNVCAFIVEPVQGEAGVIVPSDSYFPGVA 220
>pdb|3HZK|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo(2.4)kdo
pdb|3HZM|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo
pdb|3HZV|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo(2.8) Kdo(2.4)kdo
Length = 219
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 90 GGAFIVLPLNKYHP-ALAVEWSLT-FDTSNGVMFPLYDPD 127
GGA +V LN ++P ++AV+W + + NGV+ D D
Sbjct: 133 GGASVVCFLNNFYPKSIAVKWKIDGSERQNGVLNSWTDQD 172
>pdb|1MEX|L Chain L, Antibody Catalysis Of A Bimolecular Cycloaddition Reaction
Length = 213
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 88 AGGGAFIVLPLNKYHPA-LAVEWSLT-FDTSNGVMFPLYDPDT 128
GGGA +V LN ++P + V+W + + NGV+ D D+
Sbjct: 126 TGGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDS 168
>pdb|2V50|A Chain A, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|B Chain B, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|C Chain C, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|D Chain D, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|E Chain E, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|F Chain F, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
Length = 1052
Score = 26.6 bits (57), Expect = 4.6, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 4/34 (11%)
Query: 81 LAIIVESAGGGAFIVLPLNKY----HPALAVEWS 110
+A+++ AGG + + LP+N+Y PA+AV+ S
Sbjct: 15 IALVIMLAGGLSILSLPVNQYPAIAPPAIAVQVS 48
>pdb|2W9E|L Chain L, Structure Of Icsm 18 (Anti-Prp Therapeutic Antibody) Fab
Fragment Complexed With Human Prp Fragment 119-231
Length = 212
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 89 GGGAFIVLPLNKYHPA-LAVEWSLT-FDTSNGVMFPLYDPDT 128
GGGA +V LN ++P + V+W + + NGV+ D D+
Sbjct: 126 GGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDS 167
>pdb|4DYK|A Chain A, Crystal Structure Of An Adenosine Deaminase From
Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With
Bound Zn
pdb|4DYK|B Chain B, Crystal Structure Of An Adenosine Deaminase From
Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With
Bound Zn
Length = 451
Score = 26.6 bits (57), Expect = 5.1, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 111 LTFDTSNGVMFPLYDPDTNLVYLCGK 136
+ FD S P+YDP + L+Y G+
Sbjct: 375 VAFDLSGLAQQPVYDPVSQLIYASGR 400
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,288,661
Number of Sequences: 62578
Number of extensions: 165920
Number of successful extensions: 586
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 569
Number of HSP's gapped (non-prelim): 25
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)