Query psy3031
Match_columns 136
No_of_seqs 180 out of 435
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 23:45:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aq5_A Coronin-1A; WD40 repeat 99.7 1.4E-17 4.9E-22 133.2 9.7 110 1-113 1-143 (402)
2 2aq5_A Coronin-1A; WD40 repeat 97.9 3.8E-06 1.3E-10 66.7 3.1 72 43-114 8-94 (402)
3 2hqs_A Protein TOLB; TOLB, PAL 78.6 7.6 0.00026 30.9 7.5 43 70-113 358-409 (415)
4 4e54_B DNA damage-binding prot 75.3 2.5 8.5E-05 33.5 3.7 43 69-114 123-177 (435)
5 3vu4_A KMHSV2; beta-propeller 68.1 20 0.00069 27.4 7.5 44 69-113 199-252 (355)
6 4g56_B MGC81050 protein; prote 65.6 9.4 0.00032 29.4 5.1 43 69-114 273-324 (357)
7 3k26_A Polycomb protein EED; W 64.8 16 0.00055 26.8 6.1 55 56-113 105-173 (366)
8 4gga_A P55CDC, cell division c 64.8 42 0.0014 26.0 8.8 73 37-113 116-201 (420)
9 4aez_A CDC20, WD repeat-contai 64.7 19 0.00066 27.7 6.8 81 28-112 94-187 (401)
10 4gqb_B Methylosome protein 50; 59.9 18 0.0006 28.0 5.7 43 69-114 261-312 (344)
11 4h5i_A Guanine nucleotide-exch 56.5 30 0.001 26.7 6.5 59 50-113 161-231 (365)
12 3k26_A Polycomb protein EED; W 54.4 39 0.0013 24.7 6.6 42 69-113 73-127 (366)
13 1erj_A Transcriptional repress 53.2 44 0.0015 25.7 7.0 41 70-114 128-178 (393)
14 2pm9_A Protein WEB1, protein t 52.1 35 0.0012 25.6 6.1 45 69-113 218-274 (416)
15 4h5i_A Guanine nucleotide-exch 51.9 14 0.00049 28.5 4.0 39 71-113 275-324 (365)
16 2ymu_A WD-40 repeat protein; u 50.8 43 0.0015 26.7 6.7 74 35-113 26-110 (577)
17 3i2n_A WD repeat-containing pr 50.4 17 0.00057 26.7 3.9 44 69-112 22-76 (357)
18 4a11_B DNA excision repair pro 49.9 61 0.0021 24.0 7.1 63 49-114 125-199 (408)
19 4aow_A Guanine nucleotide-bind 49.3 17 0.00057 26.5 3.8 42 69-113 42-98 (340)
20 1pgu_A Actin interacting prote 48.8 40 0.0014 26.8 6.2 42 69-113 68-128 (615)
21 3zwl_B Eukaryotic translation 47.6 54 0.0018 23.8 6.4 60 50-113 58-127 (369)
22 2hqs_A Protein TOLB; TOLB, PAL 47.4 70 0.0024 25.1 7.5 43 69-112 182-233 (415)
23 1erj_A Transcriptional repress 42.7 70 0.0024 24.6 6.6 61 50-113 191-268 (393)
24 1k8k_C P40, ARP2/3 complex 41 42.4 53 0.0018 24.1 5.7 52 58-113 44-108 (372)
25 4aez_A CDC20, WD repeat-contai 41.1 86 0.003 23.9 6.9 41 69-113 221-271 (401)
26 1nr0_A Actin interacting prote 40.7 54 0.0019 27.1 6.0 41 69-113 63-115 (611)
27 3ow8_A WD repeat-containing pr 38.9 61 0.0021 24.3 5.6 41 69-113 210-260 (321)
28 4gqb_B Methylosome protein 50; 37.3 65 0.0022 24.7 5.7 41 70-113 219-269 (344)
29 3mmy_A MRNA export factor; mRN 36.6 1.1E+02 0.0036 22.2 6.5 39 69-111 90-137 (368)
30 3vl1_A 26S proteasome regulato 36.6 66 0.0023 24.2 5.5 41 69-113 143-193 (420)
31 1r5m_A SIR4-interacting protei 36.2 86 0.003 23.2 6.0 41 69-113 112-161 (425)
32 4g56_B MGC81050 protein; prote 34.8 44 0.0015 25.5 4.3 49 50-101 296-344 (357)
33 1got_B GT-beta; complex (GTP-b 34.8 87 0.003 23.4 5.9 41 69-113 188-238 (340)
34 2oit_A Nucleoporin 214KDA; NH2 34.1 40 0.0014 27.0 4.1 42 69-113 153-204 (434)
35 3ei3_B DNA damage-binding prot 33.8 59 0.002 24.4 4.8 61 50-113 100-175 (383)
36 3iz6_a 40S ribosomal protein R 32.7 1.2E+02 0.0041 23.1 6.5 41 70-113 210-261 (380)
37 3dw8_B Serine/threonine-protei 32.7 1.2E+02 0.0041 22.9 6.5 27 69-98 230-256 (447)
38 3u4y_A Uncharacterized protein 32.6 1.4E+02 0.0048 21.5 9.2 29 70-101 132-161 (331)
39 3ei3_B DNA damage-binding prot 32.3 66 0.0023 24.1 4.9 42 69-113 77-130 (383)
40 1k32_A Tricorn protease; prote 32.2 85 0.0029 27.9 6.2 44 69-113 56-118 (1045)
41 3f3f_A Nucleoporin SEH1; struc 31.9 48 0.0017 23.6 3.8 11 102-112 58-68 (351)
42 4gq1_A NUP37; propeller, trans 31.8 19 0.00066 27.9 1.7 45 69-114 140-199 (393)
43 3lrv_A PRE-mRNA-splicing facto 31.7 1E+02 0.0036 22.8 5.9 40 70-113 175-226 (343)
44 1pgu_A Actin interacting prote 31.4 74 0.0025 25.2 5.2 41 69-112 535-595 (615)
45 3zwl_B Eukaryotic translation 30.0 1.5E+02 0.0053 21.2 6.5 63 50-113 100-187 (369)
46 1gxr_A ESG1, transducin-like e 29.3 1.5E+02 0.0052 21.0 6.5 52 58-113 217-277 (337)
47 2pm9_A Protein WEB1, protein t 29.0 52 0.0018 24.7 3.7 42 69-113 266-317 (416)
48 2xyi_A Probable histone-bindin 28.5 37 0.0013 26.5 2.9 51 61-114 124-194 (430)
49 3mkq_A Coatomer beta'-subunit; 27.0 1.2E+02 0.004 25.3 5.9 61 50-114 39-110 (814)
50 4e54_B DNA damage-binding prot 26.4 88 0.003 24.3 4.8 42 69-113 168-221 (435)
51 2j04_A TAU60, YPL007P, hypothe 24.9 2.6E+02 0.0088 24.4 7.8 44 68-112 132-193 (588)
52 2xzm_R RACK1; ribosome, transl 24.8 1.9E+02 0.0065 21.4 6.3 41 69-113 217-267 (343)
53 1l0q_A Surface layer protein; 23.6 2.2E+02 0.0077 21.0 7.4 55 58-113 192-255 (391)
54 3dwl_C Actin-related protein 2 23.0 83 0.0028 23.3 3.9 41 69-113 150-217 (377)
55 2xyi_A Probable histone-bindin 22.3 1.1E+02 0.0036 23.8 4.5 43 69-114 281-334 (430)
56 3o4h_A Acylamino-acid-releasin 21.9 1.1E+02 0.0039 24.6 4.7 43 69-112 153-205 (582)
57 2vdu_B TRNA (guanine-N(7)-)-me 21.1 2.9E+02 0.0098 21.3 8.0 54 55-112 136-206 (450)
58 2ynn_A Coatomer subunit beta'; 20.7 2.5E+02 0.0084 20.4 6.4 60 50-113 81-152 (304)
59 1vyh_C Platelet-activating fac 20.6 2.4E+02 0.0084 21.6 6.3 41 69-113 342-392 (410)
60 1xfd_A DIP, dipeptidyl aminope 20.5 1.9E+02 0.0066 23.7 5.9 64 49-113 40-125 (723)
61 4ery_A WD repeat-containing pr 20.4 2.4E+02 0.0083 20.2 6.5 41 69-113 69-119 (312)
62 3fm0_A Protein CIAO1; WDR39,SG 20.0 95 0.0032 23.3 3.7 41 69-113 65-117 (345)
No 1
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.72 E-value=1.4e-17 Score=133.19 Aligned_cols=110 Identities=47% Similarity=0.838 Sum_probs=88.2
Q ss_pred CCCCcccccCCceeecccCcccccccccccccCccCCCceeeCCcEEEEeeecCCCceEEEecCCCCc------------
Q psy3031 1 MSFRVVRSSKFRHVYGTALKREFCYDNIRVSKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPLNKSS------------ 68 (136)
Q Consensus 1 M~~r~vr~SKfRHv~g~~~kke~~~~~ir~s~~~~d~n~iaan~kfiAv~~~~~gGG~~~Vlpls~~g------------ 68 (136)
|++|++|+|||||+||++.|+|.+|++++++...|+.++|++|+++.++.+..+++|.+.|.++.+.+
T Consensus 1 ~~~~~~~~sk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h 80 (402)
T 2aq5_A 1 MSRQVVRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGH 80 (402)
T ss_dssp -------CCTTTTCEEEECCGGGSEESCCBCCCCCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCC
T ss_pred CCCcccCCCCCccccCcCCChhhcEecceeecCccCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecC
Confidence 88889999999999999999999999999999999999999999999999887778999999986653
Q ss_pred ----ccCccccCCCceEEEEEeecCCceEEEEeCCC-----------------ccceeeeeccccc
Q psy3031 69 ----WDSTFCAVNPKFLAIIVESAGGGAFIVLPLNK-----------------YHPALAVEWSLTF 113 (136)
Q Consensus 69 ----~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~-----------------~~~vld~~~~p~~ 113 (136)
++..|+|++.++||+++++ |.+.|.-+.. ..+|..++|+|..
T Consensus 81 ~~~V~~~~~~p~~~~~l~s~s~d---g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 143 (402)
T 2aq5_A 81 TAPVLDIAWCPHNDNVIASGSED---CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA 143 (402)
T ss_dssp SSCEEEEEECTTCTTEEEEEETT---SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB
T ss_pred CCCEEEEEeCCCCCCEEEEEeCC---CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC
Confidence 4678899899999999876 3555554422 2678999999875
No 2
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.95 E-value=3.8e-06 Score=66.67 Aligned_cols=72 Identities=43% Similarity=0.856 Sum_probs=62.0
Q ss_pred CCcEEEEeeecC-CCceEEEecCCCCcccCccccCCCceEEEEEeecCCceEEEEeCCCc--------------cceeee
Q psy3031 43 NPKFLAIIVESA-GGGAFIVLPLNKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPLNKY--------------HPALAV 107 (136)
Q Consensus 43 n~kfiAv~~~~~-gGG~~~Vlpls~~g~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~~--------------~~vld~ 107 (136)
++||+++..+.. ...++..++++...||.+++++|++++++.+..+++|.+.|.++++. ++|.++
T Consensus 8 ~sk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~ 87 (402)
T 2aq5_A 8 SSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDI 87 (402)
T ss_dssp CCTTTTCEEEECCGGGSEESCCBCCCCCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEE
T ss_pred CCCCccccCcCCChhhcEecceeecCccCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEE
Confidence 577888887765 34689999999999999999999999999999899999999998542 689999
Q ss_pred ecccccc
Q psy3031 108 EWSLTFD 114 (136)
Q Consensus 108 ~~~p~~d 114 (136)
+|+|+++
T Consensus 88 ~~~p~~~ 94 (402)
T 2aq5_A 88 AWCPHND 94 (402)
T ss_dssp EECTTCT
T ss_pred EeCCCCC
Confidence 9999654
No 3
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=78.61 E-value=7.6 Score=30.85 Aligned_cols=43 Identities=9% Similarity=0.144 Sum_probs=30.0
Q ss_pred cCccccCCCceEEEEEeecCCceEEEEeCCCc---------cceeeeeccccc
Q psy3031 70 DSTFCAVNPKFLAIIVESAGGGAFIVLPLNKY---------HPALAVEWSLTF 113 (136)
Q Consensus 70 D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~~---------~~vld~~~~p~~ 113 (136)
...|.| |.++|++++++.+.+.+.++.++.. +.|.+++|+|..
T Consensus 358 ~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 358 TPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEEECT-TSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCC
T ss_pred CeEEcC-CCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCcccccc
Confidence 345554 5678888888766556777766431 689999999864
No 4
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=75.27 E-value=2.5 Score=33.46 Aligned_cols=43 Identities=5% Similarity=0.067 Sum_probs=30.9
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeC------------CCccceeeeecccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPL------------NKYHPALAVEWSLTFD 114 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl------------~~~~~vld~~~~p~~d 114 (136)
+...|.|.++++||++++++ .+.|--+ ...++|.+++|+|.+.
T Consensus 123 ~~l~~~P~~~~~lasGs~dg---~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~ 177 (435)
T 4e54_B 123 TSLAWHPTHPSTVAVGSKGG---DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNT 177 (435)
T ss_dssp EEEEECSSCTTCEEEEETTS---CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCT
T ss_pred EEEEEeCCCCCEEEEEeCCC---EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCC
Confidence 45678899999999998754 4444322 1237899999999764
No 5
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=68.12 E-value=20 Score=27.40 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=28.8
Q ss_pred ccCccccCCCceEEEEEeecC---------CceEEEEeCC-Cccceeeeeccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAG---------GGAFIVLPLN-KYHPALAVEWSLTF 113 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~g---------GG~f~V~pl~-~~~~vld~~~~p~~ 113 (136)
+...|+| +.++||++++++- |-.+..+... ..++|..++|+|..
T Consensus 199 ~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~ 252 (355)
T 3vu4_A 199 KMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG 252 (355)
T ss_dssp EEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTS
T ss_pred EEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCC
Confidence 3556777 6789999987653 2233333322 45789999999854
No 6
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=65.60 E-value=9.4 Score=29.43 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=30.3
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeC---------CCccceeeeecccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPL---------NKYHPALAVEWSLTFD 114 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl---------~~~~~vld~~~~p~~d 114 (136)
+...|+|-+.++||++++++ .+-|.-+ ...++|.+++|+|.+.
T Consensus 273 ~~l~~sp~~~~~lasgs~D~---~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~ 324 (357)
T 4g56_B 273 TGLAYSYHSSPFLASISEDC---TVAVLDADFSEVFRDLSHRDFVTGVAWSPLDH 324 (357)
T ss_dssp EEEEECSSSSCCEEEEETTS---CEEEECTTSCEEEEECCCSSCEEEEEECSSST
T ss_pred EEEEEcCCCCCEEEEEeCCC---EEEEEECCCCcEeEECCCCCCEEEEEEeCCCC
Confidence 45678888888999998764 4444332 3347899999999653
No 7
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=64.76 E-value=16 Score=26.78 Aligned_cols=55 Identities=11% Similarity=0.135 Sum_probs=35.0
Q ss_pred CceEEEec-CCCCcccCccccCCCceEEEEEeecCCceEEEEeCC-------------Cccceeeeeccccc
Q psy3031 56 GGAFIVLP-LNKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPLN-------------KYHPALAVEWSLTF 113 (136)
Q Consensus 56 GG~~~Vlp-ls~~g~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~-------------~~~~vld~~~~p~~ 113 (136)
+-.+..++ ....-....|.|.+.++||++++++ .+.|.-+. ...+|..++|+|..
T Consensus 105 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 173 (366)
T 3k26_A 105 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH---ALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 173 (366)
T ss_dssp CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTS---CEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS
T ss_pred ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCC---eEEEEEeecCeEEEEecccccccCceeEEEECCCC
Confidence 33444444 3333356788888889999997753 44544432 23688999998843
No 8
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=64.76 E-value=42 Score=25.98 Aligned_cols=73 Identities=12% Similarity=0.193 Sum_probs=42.9
Q ss_pred CCceeeCCcEEEEeeecCCCceEEEecCCCCc---ccCccccCCCceEEEEEeecCCceEEEEeCCC----------ccc
Q psy3031 37 STFCAVNPKFLAIIVESAGGGAFIVLPLNKSS---WDSTFCAVNPKFLAIIVESAGGGAFIVLPLNK----------YHP 103 (136)
Q Consensus 37 ~n~iaan~kfiAv~~~~~gGG~~~Vlpls~~g---~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~----------~~~ 103 (136)
+|.+|+...=-...|+..-|-+...+.+...+ +...|+| +.++||+++.++ .+.|--++. ...
T Consensus 116 ~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg---~v~iWd~~~~~~~~~~~~h~~~ 191 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSA---EVQLWDVQQQKRLRNMTSHSAR 191 (420)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTS---CEEEEETTTTEEEEEECCCSSC
T ss_pred CCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC-CCCEEEEEECCC---eEEEEEcCCCcEEEEEeCCCCc
Confidence 35555433223355775444566677665443 4567777 567999997754 555555433 256
Q ss_pred eeeeeccccc
Q psy3031 104 ALAVEWSLTF 113 (136)
Q Consensus 104 vld~~~~p~~ 113 (136)
|..++|++..
T Consensus 192 v~~~s~~~~~ 201 (420)
T 4gga_A 192 VGSLSWNSYI 201 (420)
T ss_dssp EEEEEEETTE
T ss_pred eEEEeeCCCE
Confidence 7777776543
No 9
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=64.72 E-value=19 Score=27.70 Aligned_cols=81 Identities=10% Similarity=0.171 Sum_probs=44.2
Q ss_pred cccccCccCC-CceeeCCcEEEEeeecCCCceEEEecCC--CCcccCccccCCCceEEEEEeecCCceEEEEeCCC----
Q psy3031 28 IRVSKSSWDS-TFCAVNPKFLAIIVESAGGGAFIVLPLN--KSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPLNK---- 100 (136)
Q Consensus 28 ir~s~~~~d~-n~iaan~kfiAv~~~~~gGG~~~Vlpls--~~g~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~---- 100 (136)
+.+....|++ +++++...-....|+...|-....+... ..-....|+| +.++||++..+ |.+.|..++.
T Consensus 94 ~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~d---g~i~iwd~~~~~~~ 169 (401)
T 4aez_A 94 YYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSH-DGSFLSVGLGN---GLVDIYDVESQTKL 169 (401)
T ss_dssp TTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECT-TSSEEEEEETT---SCEEEEETTTCCEE
T ss_pred ceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC-CCCEEEEECCC---CeEEEEECcCCeEE
Confidence 3344444443 3333333333344554334455555542 2225667777 67899998764 4666665543
Q ss_pred ------ccceeeeecccc
Q psy3031 101 ------YHPALAVEWSLT 112 (136)
Q Consensus 101 ------~~~vld~~~~p~ 112 (136)
.++|..++|++.
T Consensus 170 ~~~~~~~~~v~~~~~~~~ 187 (401)
T 4aez_A 170 RTMAGHQARVGCLSWNRH 187 (401)
T ss_dssp EEECCCSSCEEEEEEETT
T ss_pred EEecCCCCceEEEEECCC
Confidence 267888888653
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=59.93 E-value=18 Score=28.00 Aligned_cols=43 Identities=21% Similarity=0.204 Sum_probs=30.0
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeC---------CCccceeeeecccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPL---------NKYHPALAVEWSLTFD 114 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl---------~~~~~vld~~~~p~~d 114 (136)
+...|+|-+.++||++++|+ .+-|.-+ ...++|.+++|+|...
T Consensus 261 ~~v~fsp~g~~~lasgs~D~---~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~ 312 (344)
T 4gqb_B 261 TGLVFSPHSVPFLASLSEDC---SLAVLDSSLSELFRSQAHRDFVRDATWSPLNH 312 (344)
T ss_dssp EEEEECSSSSCCEEEEETTS---CEEEECTTCCEEEEECCCSSCEEEEEECSSST
T ss_pred EEEEEccCCCeEEEEEeCCC---eEEEEECCCCcEEEEcCCCCCEEEEEEeCCCC
Confidence 55678888888999998764 3333322 2237899999998654
No 11
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=56.55 E-value=30 Score=26.68 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=35.3
Q ss_pred eeecCCCceEEEecCCCCcccCccccCCCceEEEEEeecCCceEEEEeC------------CCccceeeeeccccc
Q psy3031 50 IVESAGGGAFIVLPLNKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPL------------NKYHPALAVEWSLTF 113 (136)
Q Consensus 50 ~~~~~gGG~~~Vlpls~~g~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl------------~~~~~vld~~~~p~~ 113 (136)
.|+...+-+...+.....-+|..|+| |.++||+++++ + ..++-. .....|..++|+|..
T Consensus 161 iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~~---~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg 231 (365)
T 4h5i_A 161 IIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITGS---S-LEVISTVTGSCIARKTDFDKNWSLSKINFIADD 231 (365)
T ss_dssp EEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECSS---C-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETT
T ss_pred EeECCCCcEEEEeCCCCceEEEEEcc-CCceEEeccce---e-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCC
Confidence 45654444666666655557788887 66789988643 2 222211 122567888888754
No 12
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=54.37 E-value=39 Score=24.66 Aligned_cols=42 Identities=7% Similarity=0.057 Sum_probs=27.7
Q ss_pred ccCccccCC---CceEEEEEeecCCceEEEEeCCC----------ccceeeeeccccc
Q psy3031 69 WDSTFCAVN---PKFLAIIVESAGGGAFIVLPLNK----------YHPALAVEWSLTF 113 (136)
Q Consensus 69 ~D~~f~p~n---~~~lAv~~e~~gGG~f~V~pl~~----------~~~vld~~~~p~~ 113 (136)
....|+|-. .++||++.++ |.+.|.-++. ..+|..++|+|.+
T Consensus 73 ~~~~~~~~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 127 (366)
T 3k26_A 73 YTCAWTYDSNTSHPLLAVAGSR---GIIRIINPITMQCIKHYVGHGNAINELKFHPRD 127 (366)
T ss_dssp EEEEEEECTTTCCEEEEEEETT---CEEEEECTTTCCEEEEEESCCSCEEEEEECSSC
T ss_pred EEEEeccCCCCCCCEEEEecCC---CEEEEEEchhceEeeeecCCCCcEEEEEECCCC
Confidence 445566654 3588988764 4666665532 2789999999943
No 13
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=53.24 E-value=44 Score=25.73 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=26.9
Q ss_pred cCccccCCCceEEEEEeecCCceEEEEeCCC----------ccceeeeecccccc
Q psy3031 70 DSTFCAVNPKFLAIIVESAGGGAFIVLPLNK----------YHPALAVEWSLTFD 114 (136)
Q Consensus 70 D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~----------~~~vld~~~~p~~d 114 (136)
...|.| +.++||++++++ .+.|.-++. ..+|.+++|+|..+
T Consensus 128 ~v~~s~-dg~~l~s~~~d~---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~ 178 (393)
T 1erj_A 128 SVCFSP-DGKFLATGAEDR---LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD 178 (393)
T ss_dssp EEEECT-TSSEEEEEETTS---CEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred EEEECC-CCCEEEEEcCCC---eEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC
Confidence 345665 567999987653 555544432 26899999998653
No 14
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=52.11 E-value=35 Score=25.64 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=32.5
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeCCC------------ccceeeeeccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPLNK------------YHPALAVEWSLTF 113 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~------------~~~vld~~~~p~~ 113 (136)
....|.|-+.++|+++.++++.|.+.|.-+.. ..+|..++|+|.+
T Consensus 218 ~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 274 (416)
T 2pm9_A 218 SVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD 274 (416)
T ss_dssp EEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSC
T ss_pred EEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCC
Confidence 56678888888999998876545666655432 2578999999843
No 15
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=51.94 E-value=14 Score=28.52 Aligned_cols=39 Identities=8% Similarity=0.026 Sum_probs=26.3
Q ss_pred CccccCCCceEEEEEeecCCceEEEEeCC-----------Cccceeeeeccccc
Q psy3031 71 STFCAVNPKFLAIIVESAGGGAFIVLPLN-----------KYHPALAVEWSLTF 113 (136)
Q Consensus 71 ~~f~p~n~~~lAv~~e~~gGG~f~V~pl~-----------~~~~vld~~~~p~~ 113 (136)
..|+| +.++||++++++ .+.|.-++ ...+|.+++|+|.-
T Consensus 275 ~~~Sp-dg~~lasgs~D~---~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg 324 (365)
T 4h5i_A 275 MDVDM-KGELAVLASNDN---SIALVKLKDLSMSKIFKQAHSFAITEVTISPDS 324 (365)
T ss_dssp EEECT-TSCEEEEEETTS---CEEEEETTTTEEEEEETTSSSSCEEEEEECTTS
T ss_pred EEECC-CCCceEEEcCCC---EEEEEECCCCcEEEEecCcccCCEEEEEECCCC
Confidence 34555 567999998764 44444332 23789999999954
No 16
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=50.83 E-value=43 Score=26.68 Aligned_cols=74 Identities=15% Similarity=0.114 Sum_probs=42.2
Q ss_pred cCCCceeeCC-cEEEEeeecCCCceEEEecC-CCCcccCccccCCCceEEEEEeecCCceEEEEeCC---------Cccc
Q psy3031 35 WDSTFCAVNP-KFLAIIVESAGGGAFIVLPL-NKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPLN---------KYHP 103 (136)
Q Consensus 35 ~d~n~iaan~-kfiAv~~~~~gGG~~~Vlpl-s~~g~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~---------~~~~ 103 (136)
-|+.+++.-+ .-....|+. .|-.+..++- +..-+...|+| |.++||++++++ .+.|--++ ..++
T Consensus 26 pdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fsp-dg~~las~~~d~---~i~vWd~~~~~~~~~~~~~~~ 100 (577)
T 2ymu_A 26 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDK---TVKLWNRNGQLLQTLTGHSSS 100 (577)
T ss_dssp TTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTS---CEEEEETTSCEEEEECCCSSC
T ss_pred CCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECC-CCCEEEEEeCCC---EEEEEECCCCEEEEEECCCCC
Confidence 3666665432 223345664 3445555553 22225667777 567899887643 44443322 2378
Q ss_pred eeeeeccccc
Q psy3031 104 ALAVEWSLTF 113 (136)
Q Consensus 104 vld~~~~p~~ 113 (136)
|..++|+|..
T Consensus 101 v~~~~~s~d~ 110 (577)
T 2ymu_A 101 VRGVAFSPDG 110 (577)
T ss_dssp EEEEEECTTS
T ss_pred EEEEEECCCC
Confidence 9999999854
No 17
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=50.45 E-value=17 Score=26.70 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=27.5
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeCC-----------Cccceeeeecccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPLN-----------KYHPALAVEWSLT 112 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~-----------~~~~vld~~~~p~ 112 (136)
.+..|+|-+++++|+++++.+.|.+.|..++ ...+|..++|+|.
T Consensus 22 ~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~ 76 (357)
T 3i2n_A 22 FDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGAT 76 (357)
T ss_dssp EEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTC
T ss_pred EEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCC
Confidence 4456677677777777654334455554443 2368999999997
No 18
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=49.90 E-value=61 Score=23.98 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=41.3
Q ss_pred EeeecCCCceEEEecCCCCcccCccccCCCc--eEEEEEeecCCceEEEEeCCC----------ccceeeeecccccc
Q psy3031 49 IIVESAGGGAFIVLPLNKSSWDSTFCAVNPK--FLAIIVESAGGGAFIVLPLNK----------YHPALAVEWSLTFD 114 (136)
Q Consensus 49 v~~~~~gGG~~~Vlpls~~g~D~~f~p~n~~--~lAv~~e~~gGG~f~V~pl~~----------~~~vld~~~~p~~d 114 (136)
..|+...+.....+.+........|.+.+++ +|+++..+ |.+.|.-+.. .++|..++|+|..+
T Consensus 125 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 199 (408)
T 4a11_B 125 KVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG---PKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD 199 (408)
T ss_dssp EEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS---SSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT
T ss_pred EEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCC---CeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC
Confidence 3345444456666666665566778887654 88888654 4666665543 26889999998654
No 19
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=49.31 E-value=17 Score=26.54 Aligned_cols=42 Identities=14% Similarity=0.011 Sum_probs=28.7
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeCC---------------Cccceeeeeccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPLN---------------KYHPALAVEWSLTF 113 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~---------------~~~~vld~~~~p~~ 113 (136)
+...|+|-++++||++++|+ .+-|=-+. ..++|.+++|+|..
T Consensus 42 ~~v~~sp~~~~~l~S~s~D~---~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg 98 (340)
T 4aow_A 42 TQIATTPQFPDMILSASRDK---TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG 98 (340)
T ss_dssp EEEEECTTCTTEEEEEETTS---CEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS
T ss_pred EEEEEeCCCCCEEEEEcCCC---eEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC
Confidence 45567888889999998764 44443221 12688999999854
No 20
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=48.79 E-value=40 Score=26.83 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=28.9
Q ss_pred ccCccccC-CCceEEEEEeecCCceEEEEeCC------------------Cccceeeeeccccc
Q psy3031 69 WDSTFCAV-NPKFLAIIVESAGGGAFIVLPLN------------------KYHPALAVEWSLTF 113 (136)
Q Consensus 69 ~D~~f~p~-n~~~lAv~~e~~gGG~f~V~pl~------------------~~~~vld~~~~p~~ 113 (136)
+...|+|. +.++||+++++ |.+.|..+. ...+|.+++|+|..
T Consensus 68 ~~~~~sp~~~~~~l~s~~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 128 (615)
T 1pgu_A 68 TTVKFSPIKGSQYLCSGDES---GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG 128 (615)
T ss_dssp EEEEECSSTTCCEEEEEETT---SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS
T ss_pred EEEEECcCCCCCEEEEecCC---CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCC
Confidence 34567776 67899999774 466665552 12688999999864
No 21
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=47.59 E-value=54 Score=23.82 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=36.2
Q ss_pred eeecCCCceEEEec-CCCCcccCccccCCCceEEEEEeecCCceEEEEeCCC---------ccceeeeeccccc
Q psy3031 50 IVESAGGGAFIVLP-LNKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPLNK---------YHPALAVEWSLTF 113 (136)
Q Consensus 50 ~~~~~gGG~~~Vlp-ls~~g~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~---------~~~vld~~~~p~~ 113 (136)
.|+...+..+..++ ....-+...|+| +.++||+++.+ |.+.|.-+.. ..+|..++|+|..
T Consensus 58 vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 127 (369)
T 3zwl_B 58 VWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSAD---YSIKLWDVSNGQCVATWKSPVPVKRVEFSPCG 127 (369)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETT---TEEEEEETTTCCEEEEEECSSCEEEEEECTTS
T ss_pred EEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCC---CeEEEEECCCCcEEEEeecCCCeEEEEEccCC
Confidence 34433344555554 222335667777 67788888664 4666665543 2678889998854
No 22
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=47.41 E-value=70 Score=25.08 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=28.6
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeCCCc---------cceeeeecccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPLNKY---------HPALAVEWSLT 112 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~~---------~~vld~~~~p~ 112 (136)
....|+| +.++||+++.+.+...+.+..+..- +.+..++|+|.
T Consensus 182 ~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spd 233 (415)
T 2hqs_A 182 MSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPD 233 (415)
T ss_dssp EEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTT
T ss_pred eeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCC
Confidence 4566776 5678888887766666777666421 45677778774
No 23
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=42.71 E-value=70 Score=24.56 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=36.4
Q ss_pred eeecCCCceEEEecCCCCcccCccccCCCceEEEEEeecCCceEEEEeCC-----------------Cccceeeeecccc
Q psy3031 50 IVESAGGGAFIVLPLNKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPLN-----------------KYHPALAVEWSLT 112 (136)
Q Consensus 50 ~~~~~gGG~~~Vlpls~~g~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~-----------------~~~~vld~~~~p~ 112 (136)
.|+...|.+...+.....-....|.|.+.++||+++.++ .+-|.-+. ..++|..++|+|.
T Consensus 191 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~---~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~ 267 (393)
T 1erj_A 191 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDR---AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 267 (393)
T ss_dssp EEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTS---CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred EEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCC---cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC
Confidence 344333334444444444455677888889999987653 44443321 2257889999885
Q ss_pred c
Q psy3031 113 F 113 (136)
Q Consensus 113 ~ 113 (136)
.
T Consensus 268 g 268 (393)
T 1erj_A 268 G 268 (393)
T ss_dssp S
T ss_pred C
Confidence 4
No 24
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=42.41 E-value=53 Score=24.11 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=31.7
Q ss_pred eEEEec-CCCCcccCccccCCCceEEEEEeecCCceEEEEeCC------------Cccceeeeeccccc
Q psy3031 58 AFIVLP-LNKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPLN------------KYHPALAVEWSLTF 113 (136)
Q Consensus 58 ~~~Vlp-ls~~g~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~------------~~~~vld~~~~p~~ 113 (136)
.+..++ ....-....|.| +.++||+++++ |.+.|..++ ...+|.+++|+|..
T Consensus 44 ~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 108 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAP-DSNRIVTCGTD---RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE 108 (372)
T ss_dssp EEEEEECCSSCEEEEEEET-TTTEEEEEETT---SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS
T ss_pred eeeeecCCCCcccEEEEeC-CCCEEEEEcCC---CeEEEEECCCCeeeeeEEeecCCCceeEEEECCCC
Confidence 444554 222335667777 67888888754 355554432 12678899998854
No 25
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.10 E-value=86 Score=23.90 Aligned_cols=41 Identities=12% Similarity=0.016 Sum_probs=27.5
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeCCC----------ccceeeeeccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPLNK----------YHPALAVEWSLTF 113 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~----------~~~vld~~~~p~~ 113 (136)
....|.| +.++||++.++ |.+.|.-+.. .++|..++|+|..
T Consensus 221 ~~~~~~~-~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~ 271 (401)
T 4aez_A 221 CGLAWRS-DGLQLASGGND---NVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ 271 (401)
T ss_dssp EEEEECT-TSSEEEEEETT---SCEEEEETTCSSEEEEECCCSSCCCEEEECTTS
T ss_pred eEEEEcC-CCCEEEEEeCC---CeEEEccCCCCCccEEecCCcceEEEEEECCCC
Confidence 4556777 67788888764 3555555432 2688889998854
No 26
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=40.71 E-value=54 Score=27.09 Aligned_cols=41 Identities=7% Similarity=-0.035 Sum_probs=26.6
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeCC------------Cccceeeeeccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPLN------------KYHPALAVEWSLTF 113 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~------------~~~~vld~~~~p~~ 113 (136)
+...|+| +.++||+++.++ .+-|--+. ..++|.+++|+|..
T Consensus 63 ~~~~~sp-dg~~lasg~~d~---~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg 115 (611)
T 1nr0_A 63 TVAKTSP-SGYYCASGDVHG---NVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES 115 (611)
T ss_dssp EEEEECT-TSSEEEEEETTS---EEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS
T ss_pred EEEEECC-CCcEEEEEeCCC---CEEEeECCCCcceeeEeecccCCceEEEEECCCC
Confidence 3456666 567999997653 44444332 12689999999854
No 27
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=38.90 E-value=61 Score=24.29 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=27.1
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeCCC----------ccceeeeeccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPLNK----------YHPALAVEWSLTF 113 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~----------~~~vld~~~~p~~ 113 (136)
....|+| +.++||++++++ .+-|.-+.. .++|..++|+|..
T Consensus 210 ~~l~~sp-d~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~ 260 (321)
T 3ow8_A 210 RSLTFSP-DSQLLVTASDDG---YIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 260 (321)
T ss_dssp CEEEECT-TSCEEEEECTTS---CEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred eEEEEcC-CCCEEEEEcCCC---eEEEEECCCcceeEEEcCCCCceEEEEECCCC
Confidence 3456666 567899887653 555554432 2679999999864
No 28
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=37.27 E-value=65 Score=24.67 Aligned_cols=41 Identities=5% Similarity=0.006 Sum_probs=29.0
Q ss_pred cCccccCCCceEEEEEeecCCceEEEEeCCC----------ccceeeeeccccc
Q psy3031 70 DSTFCAVNPKFLAIIVESAGGGAFIVLPLNK----------YHPALAVEWSLTF 113 (136)
Q Consensus 70 D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~----------~~~vld~~~~p~~ 113 (136)
...|.|-+.++||++++++ .+-|.-+.. ..+|..++|+|..
T Consensus 219 ~~~~~p~~~~~l~sg~~dg---~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g 269 (344)
T 4gqb_B 219 SLAWHPQQSEVFVFGDENG---TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHS 269 (344)
T ss_dssp EEEECSSCTTEEEEEETTS---EEEEEESCC--CCEEEECCSSCEEEEEECSSS
T ss_pred eeeecCCCCcceEEeccCC---cEEEEECCCCcEEEEEcCCCCCEEEEEEccCC
Confidence 4567788889999987753 555544322 2689999999864
No 29
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=36.65 E-value=1.1e+02 Score=22.16 Aligned_cols=39 Identities=10% Similarity=0.139 Sum_probs=27.4
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeCCCc---------cceeeeeccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPLNKY---------HPALAVEWSL 111 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~~---------~~vld~~~~p 111 (136)
+...|+| +.++||+++++ |.+.|.-++.. ++|..++|.|
T Consensus 90 ~~~~~~~-~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~ 137 (368)
T 3mmy_A 90 LDVCWSD-DGSKVFTASCD---KTAKMWDLSSNQAIQIAQHDAPVKTIHWIK 137 (368)
T ss_dssp EEEEECT-TSSEEEEEETT---SEEEEEETTTTEEEEEEECSSCEEEEEEEE
T ss_pred EEEEECc-CCCEEEEEcCC---CcEEEEEcCCCCceeeccccCceEEEEEEe
Confidence 5667777 77789988764 46666665432 6899999943
No 30
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=36.60 E-value=66 Score=24.25 Aligned_cols=41 Identities=5% Similarity=-0.089 Sum_probs=28.4
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeCCC----------ccceeeeeccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPLNK----------YHPALAVEWSLTF 113 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~----------~~~vld~~~~p~~ 113 (136)
.+..|+| +.++||+++.+ |.+.|.-+.. .++|..++|+|..
T Consensus 143 ~~~~~~~-~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 193 (420)
T 3vl1_A 143 TKLKFFP-SGEALISSSQD---MQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG 193 (420)
T ss_dssp EEEEECT-TSSEEEEEETT---SEEEEEETTTCCCCEEEECCSSCEEEEEEETTT
T ss_pred EEEEECC-CCCEEEEEeCC---CeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC
Confidence 4567777 46688888764 4666665543 2689999999854
No 31
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=36.18 E-value=86 Score=23.21 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=27.1
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeCC---------Cccceeeeeccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPLN---------KYHPALAVEWSLTF 113 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~---------~~~~vld~~~~p~~ 113 (136)
....|+| +.++||++..+ |.+.|.-.+ ...+|..++|+|..
T Consensus 112 ~~~~~s~-~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (425)
T 1r5m_A 112 TCLAWSH-DGNSIVTGVEN---GELRLWNKTGALLNVLNFHRAPIVSVKWNKDG 161 (425)
T ss_dssp EEEEECT-TSSEEEEEETT---SCEEEEETTSCEEEEECCCCSCEEEEEECTTS
T ss_pred EEEEEcC-CCCEEEEEeCC---CeEEEEeCCCCeeeeccCCCccEEEEEECCCC
Confidence 4556777 67799988764 355554321 12689999999854
No 32
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=34.85 E-value=44 Score=25.52 Aligned_cols=49 Identities=6% Similarity=-0.003 Sum_probs=31.8
Q ss_pred eeecCCCceEEEecCCCCcccCccccCCCceEEEEEeecCCceEEEEeCCCc
Q psy3031 50 IVESAGGGAFIVLPLNKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPLNKY 101 (136)
Q Consensus 50 ~~~~~gGG~~~Vlpls~~g~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~~ 101 (136)
.|+...|-.+..+.++..-++..|+|.+.++||++++|+ .+.|-.+...
T Consensus 296 iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg---~v~iW~~~~~ 344 (357)
T 4g56_B 296 VLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDH---KVLHHHLPSE 344 (357)
T ss_dssp EECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTS---CEEEEECC--
T ss_pred EEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCC---eEEEEECCCC
Confidence 355433445555555555577889999999999998764 6666555443
No 33
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=34.84 E-value=87 Score=23.36 Aligned_cols=41 Identities=5% Similarity=-0.048 Sum_probs=26.1
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeCCC----------ccceeeeeccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPLNK----------YHPALAVEWSLTF 113 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~----------~~~vld~~~~p~~ 113 (136)
+...|.| +.++|++++.++ .+-+.-+.. .++|..++|+|..
T Consensus 188 ~~~~~~~-~~~~l~sg~~d~---~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~ 238 (340)
T 1got_B 188 MSLSLAP-DTRLFVSGACDA---SAKLWDVREGMCRQTFTGHESDINAICFFPNG 238 (340)
T ss_dssp EEEEECT-TSSEEEEEETTS---CEEEEETTTCSEEEEECCCSSCEEEEEECTTS
T ss_pred EEEEECC-CCCEEEEEeCCC---cEEEEECCCCeeEEEEcCCcCCEEEEEEcCCC
Confidence 4456666 566888886643 444444322 2688999999864
No 34
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=34.12 E-value=40 Score=27.00 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=29.9
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeCC----------Cccceeeeeccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPLN----------KYHPALAVEWSLTF 113 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~----------~~~~vld~~~~p~~ 113 (136)
++..|+|.+.++||+++.++ .+.|.-+. ...+|..++|+|.-
T Consensus 153 ~~v~~~p~~~~~las~s~Dg---~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg 204 (434)
T 2oit_A 153 IDMKWNPTVPSMVAVCLADG---SIAVLQVTETVKVCATLPSTVAVTSVCWSPKG 204 (434)
T ss_dssp EEEEECSSCTTEEEEEETTS---CEEEEEESSSEEEEEEECGGGCEEEEEECTTS
T ss_pred EEEEECCCCCCEEEEEECCC---eEEEEEcCCCcceeeccCCCCceeEEEEcCCC
Confidence 56788888888999987653 44444332 23689999999864
No 35
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=33.79 E-value=59 Score=24.37 Aligned_cols=61 Identities=11% Similarity=-0.036 Sum_probs=36.9
Q ss_pred eeecCCCceEEEecC---CCCcccCccccCCCceEEEEEeecCCceEEEEeCCCc------------cceeeeeccccc
Q psy3031 50 IVESAGGGAFIVLPL---NKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPLNKY------------HPALAVEWSLTF 113 (136)
Q Consensus 50 ~~~~~gGG~~~Vlpl---s~~g~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~~------------~~vld~~~~p~~ 113 (136)
.|+...+-....+.. ...-.+..|+|.+.++|++++.+ |.+.+..+... .+|..++|+|..
T Consensus 100 iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 175 (383)
T 3ei3_B 100 LWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR---GATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSR 175 (383)
T ss_dssp EEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT---TEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTT
T ss_pred EEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC---CEEEEEECCCCceEEEeccCCCCCCeEEEEECCCC
Confidence 344433344445442 22335678888888999999764 35555544321 568899998854
No 36
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=32.74 E-value=1.2e+02 Score=23.05 Aligned_cols=41 Identities=7% Similarity=-0.042 Sum_probs=28.5
Q ss_pred cCccccCCCceEEEEEeecCCceEEEEeCC-----------Cccceeeeeccccc
Q psy3031 70 DSTFCAVNPKFLAIIVESAGGGAFIVLPLN-----------KYHPALAVEWSLTF 113 (136)
Q Consensus 70 D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~-----------~~~~vld~~~~p~~ 113 (136)
...|.+.++++|++++.++ .+-+--+. ..++|..++|+|..
T Consensus 210 ~~~~~~~~~~~l~sgs~D~---~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~ 261 (380)
T 3iz6_a 210 SLSINSLNANMFISGSCDT---TVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261 (380)
T ss_dssp EEEECSSSCCEEEEEETTS---CEEEEETTTTCCCCEEECCCSSCCCEEEECTTS
T ss_pred EEEeecCCCCEEEEEECCC---eEEEEECCCCCcceEEECCcCCCeEEEEEecCC
Confidence 4456777899999997754 55554432 12689999999854
No 37
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=32.72 E-value=1.2e+02 Score=22.90 Aligned_cols=27 Identities=4% Similarity=-0.017 Sum_probs=18.6
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeC
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPL 98 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl 98 (136)
+...|.|-++++||+++.++ .+.+.-+
T Consensus 230 ~~~~~~p~~~~~l~s~~~dg---~i~iwd~ 256 (447)
T 3dw8_B 230 TAAEFHPNSCNTFVYSSSKG---TIRLCDM 256 (447)
T ss_dssp EEEEECSSCTTEEEEEETTS---CEEEEET
T ss_pred EEEEECCCCCcEEEEEeCCC---eEEEEEC
Confidence 45677777778999997753 5555544
No 38
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=32.59 E-value=1.4e+02 Score=21.54 Aligned_cols=29 Identities=7% Similarity=0.020 Sum_probs=13.8
Q ss_pred cCccccCCCceEEEEEeecCCce-EEEEeCCCc
Q psy3031 70 DSTFCAVNPKFLAIIVESAGGGA-FIVLPLNKY 101 (136)
Q Consensus 70 D~~f~p~n~~~lAv~~e~~gGG~-f~V~pl~~~ 101 (136)
+..|.|-. ++|++... +.+. +.|..++..
T Consensus 132 ~~~~spdg-~~l~~~~~--~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 132 GIAISPNG-NGLILIDR--SSANTVRRFKIDAD 161 (331)
T ss_dssp EEEECTTS-SCEEEEEE--TTTTEEEEEEECTT
T ss_pred ceEECCCC-CEEEEEec--CCCceEEEEEECCC
Confidence 44555533 34555433 2344 666655443
No 39
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=32.33 E-value=66 Score=24.07 Aligned_cols=42 Identities=7% Similarity=0.083 Sum_probs=28.3
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeCC------------Cccceeeeeccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPLN------------KYHPALAVEWSLTF 113 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~------------~~~~vld~~~~p~~ 113 (136)
+...|+|-++++||++++++ .+.|.-+. ..++|.+++|+|.+
T Consensus 77 ~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 130 (383)
T 3ei3_B 77 TSLEWHPTHPTTVAVGSKGG---DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFN 130 (383)
T ss_dssp EEEEECSSCTTEEEEEEBTS---CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTE
T ss_pred EEEEECCCCCCEEEEEcCCC---eEEEEeCCCcccceeeecCCcCCceeEEEeCCCC
Confidence 44566776668899887753 44444432 33789999999954
No 40
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=32.17 E-value=85 Score=27.93 Aligned_cols=44 Identities=9% Similarity=-0.019 Sum_probs=28.0
Q ss_pred ccCccccCCCceEEEEEee---cCCceEEEEeCCCc---------cce-------eeeeccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVES---AGGGAFIVLPLNKY---------HPA-------LAVEWSLTF 113 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~---~gGG~f~V~pl~~~---------~~v-------ld~~~~p~~ 113 (136)
....|+| |.++||+.+.. .+.+.+.+.+++.. ..+ ..++|+|.-
T Consensus 56 ~~~~~SP-DG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg 118 (1045)
T 1k32_A 56 NNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDG 118 (1045)
T ss_dssp EEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTC
T ss_pred cCeEECC-CCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCC
Confidence 4566766 67889988765 34455666665331 344 778888743
No 41
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=31.94 E-value=48 Score=23.58 Aligned_cols=11 Identities=18% Similarity=0.688 Sum_probs=9.1
Q ss_pred cceeeeecccc
Q psy3031 102 HPALAVEWSLT 112 (136)
Q Consensus 102 ~~vld~~~~p~ 112 (136)
++|..++|+|.
T Consensus 58 ~~v~~~~~~~~ 68 (351)
T 3f3f_A 58 SSIVAIDWASP 68 (351)
T ss_dssp SCEEEEEECCG
T ss_pred CcEEEEEEcCC
Confidence 68888999885
No 42
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=31.77 E-value=19 Score=27.94 Aligned_cols=45 Identities=11% Similarity=0.209 Sum_probs=28.8
Q ss_pred ccCcccc-------CCCceEEEEEeec--------CCceEEEEeCCCccceeeeecccccc
Q psy3031 69 WDSTFCA-------VNPKFLAIIVESA--------GGGAFIVLPLNKYHPALAVEWSLTFD 114 (136)
Q Consensus 69 ~D~~f~p-------~n~~~lAv~~e~~--------gGG~f~V~pl~~~~~vld~~~~p~~d 114 (136)
++..|+| .+.++||++++|. .++... ......++|+.++|+|...
T Consensus 140 ~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~-~~~~~~~~v~~v~~~p~~~ 199 (393)
T 4gq1_A 140 NDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL-AGYPLSSPGISVQFRPSNP 199 (393)
T ss_dssp EEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE-EEEECSSCEEEEEEETTEE
T ss_pred EEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee-eecCCCCCcEEEEECCCCC
Confidence 5667776 3678999998765 222211 1122237899999999753
No 43
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=31.68 E-value=1e+02 Score=22.81 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=25.6
Q ss_pred cCccccCCCceEEEEEeecCCceEEEEeC------------CCccceeeeeccccc
Q psy3031 70 DSTFCAVNPKFLAIIVESAGGGAFIVLPL------------NKYHPALAVEWSLTF 113 (136)
Q Consensus 70 D~~f~p~n~~~lAv~~e~~gGG~f~V~pl------------~~~~~vld~~~~p~~ 113 (136)
...|.| +.++||++++++ .+-|.-+ ...++|..++|+|.-
T Consensus 175 ~~~~~p-dg~~lasg~~dg---~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g 226 (343)
T 3lrv_A 175 SGVLHK-DSLLLALYSPDG---ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNG 226 (343)
T ss_dssp EEEECT-TSCEEEEECTTS---CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTS
T ss_pred EEEECC-CCCEEEEEcCCC---EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCC
Confidence 345555 567999986543 4444332 234789999999854
No 44
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=31.36 E-value=74 Score=25.22 Aligned_cols=41 Identities=5% Similarity=0.104 Sum_probs=29.3
Q ss_pred ccCccccC---------CCceEEEEEeecCCceEEEEeCCC-----------ccceeeeecccc
Q psy3031 69 WDSTFCAV---------NPKFLAIIVESAGGGAFIVLPLNK-----------YHPALAVEWSLT 112 (136)
Q Consensus 69 ~D~~f~p~---------n~~~lAv~~e~~gGG~f~V~pl~~-----------~~~vld~~~~p~ 112 (136)
+...|+|. +.++||++++++ .+.|..++. .++|.+++|+|.
T Consensus 535 ~~~~~sp~~~~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~ 595 (615)
T 1pgu_A 535 NAISWKPAEKGANEEEIEEDLVATGSLDT---NIFIYSVKRPMKIIKALNAHKDGVNNLLWETP 595 (615)
T ss_dssp EEEEECCCC------CCSCCEEEEEETTS---CEEEEESSCTTCCEEETTSSTTCEEEEEEEET
T ss_pred eEEEEcCccccccccccCCCEEEEEcCCC---cEEEEECCCCceechhhhcCccceEEEEEcCC
Confidence 56677774 788999997753 666665543 268889999875
No 45
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=30.02 E-value=1.5e+02 Score=21.24 Aligned_cols=63 Identities=11% Similarity=0.214 Sum_probs=36.4
Q ss_pred eeecCCCceEEEecCCCCcccCccccCCCceEEEEEee--cCCceEEEEeCCCc-----------------------cce
Q psy3031 50 IVESAGGGAFIVLPLNKSSWDSTFCAVNPKFLAIIVES--AGGGAFIVLPLNKY-----------------------HPA 104 (136)
Q Consensus 50 ~~~~~gGG~~~Vlpls~~g~D~~f~p~n~~~lAv~~e~--~gGG~f~V~pl~~~-----------------------~~v 104 (136)
.|+...+-.+..++....-....|.|- .++|+++.++ ...|.+.|.-+... ..+
T Consensus 100 iwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 100 LWDVSNGQCVATWKSPVPVKRVEFSPC-GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp EEETTTCCEEEEEECSSCEEEEEECTT-SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred EEECCCCcEEEEeecCCCeEEEEEccC-CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 344333445566665444466777774 5577777654 22256666554322 178
Q ss_pred eeeeccccc
Q psy3031 105 LAVEWSLTF 113 (136)
Q Consensus 105 ld~~~~p~~ 113 (136)
..++|+|..
T Consensus 179 ~~~~~~~~~ 187 (369)
T 3zwl_B 179 TVAGWSTKG 187 (369)
T ss_dssp EEEEECGGG
T ss_pred eEEEEcCCC
Confidence 888888854
No 46
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=29.33 E-value=1.5e+02 Score=20.99 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=30.8
Q ss_pred eEEEecCCCCcccCccccCCCceEEEEEeecCCceEEEEeCCC---------ccceeeeeccccc
Q psy3031 58 AFIVLPLNKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPLNK---------YHPALAVEWSLTF 113 (136)
Q Consensus 58 ~~~Vlpls~~g~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~---------~~~vld~~~~p~~ 113 (136)
.+..++....-....|+|- .++|+++.++ |.+.+..+.. .++|..++|+|..
T Consensus 217 ~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~---~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 277 (337)
T 1gxr_A 217 QLQQHDFTSQIFSLGYCPT-GEWLAVGMES---SNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG 277 (337)
T ss_dssp EEEEEECSSCEEEEEECTT-SSEEEEEETT---SCEEEEETTSSCEEEECCCSSCEEEEEECTTS
T ss_pred eEeeecCCCceEEEEECCC-CCEEEEEcCC---CcEEEEECCCCCeEEEcCCccceeEEEECCCC
Confidence 4444444333344556653 5678877653 4566665533 2688999999854
No 47
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=28.99 E-value=52 Score=24.68 Aligned_cols=42 Identities=5% Similarity=0.081 Sum_probs=29.9
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeCCC----------ccceeeeeccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPLNK----------YHPALAVEWSLTF 113 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~----------~~~vld~~~~p~~ 113 (136)
+...|+|.+.++|+++.++ |.+.|..+.. .++|.+++|+|..
T Consensus 266 ~~~~~s~~~~~~l~s~~~d---g~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 317 (416)
T 2pm9_A 266 LSLDWCHQDEHLLLSSGRD---NTVLLWNPESAEQLSQFPARGNWCFKTKFAPEA 317 (416)
T ss_dssp EEEEECSSCSSCEEEEESS---SEEEEECSSSCCEEEEEECSSSCCCCEEECTTC
T ss_pred eEEEeCCCCCCeEEEEeCC---CCEEEeeCCCCccceeecCCCCceEEEEECCCC
Confidence 3466777788999999775 3566655432 2688999999865
No 48
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=28.48 E-value=37 Score=26.51 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=34.8
Q ss_pred EecCCCCcccCccccCCCceEEEEEeecCCceEEEEeCCC----------c----------cceeeeecccccc
Q psy3031 61 VLPLNKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPLNK----------Y----------HPALAVEWSLTFD 114 (136)
Q Consensus 61 Vlpls~~g~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~----------~----------~~vld~~~~p~~d 114 (136)
.+.+...-+...|+|-++++||+++++ |.+.|.-+.. . ++|..++|+|...
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~d---g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 194 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPS---SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN 194 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSS---SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCC---CcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC
Confidence 344444446677888778899999764 4677776643 1 5788899998653
No 49
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=27.01 E-value=1.2e+02 Score=25.33 Aligned_cols=61 Identities=10% Similarity=0.002 Sum_probs=35.9
Q ss_pred eeecCCCceEEEecCC-CCcccCccccCCCceEEEEEeecCCceEEEEeCCC----------ccceeeeecccccc
Q psy3031 50 IVESAGGGAFIVLPLN-KSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPLNK----------YHPALAVEWSLTFD 114 (136)
Q Consensus 50 ~~~~~gGG~~~Vlpls-~~g~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~----------~~~vld~~~~p~~d 114 (136)
.|+...|..+..+... ..-....|+| +.++||+++++ |.+.|.-+.. .++|..++|+|...
T Consensus 39 iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 110 (814)
T 3mkq_A 39 IWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDD---FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP 110 (814)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETT---SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred EEECCCCceEEEEecCCCcEEEEEEeC-CCCEEEEEeCC---CeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCC
Confidence 3443334455555422 2224566777 56788888764 4566655432 26899999998653
No 50
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=26.44 E-value=88 Score=24.29 Aligned_cols=42 Identities=7% Similarity=-0.096 Sum_probs=27.5
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeCC----------Cc--cceeeeeccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPLN----------KY--HPALAVEWSLTF 113 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~----------~~--~~vld~~~~p~~ 113 (136)
++..|+|.|+++|++++.|+ .+-|--++ .. ..+..++|+|..
T Consensus 168 ~~l~f~p~~~~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (435)
T 4e54_B 168 TGLKFNPLNTNQFYASSMEG---TTRLQDFKGNILRVFASSDTINIWFCSLDVSASS 221 (435)
T ss_dssp CEEEECSSCTTEEEEECSSS---CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTT
T ss_pred EEEEEeCCCCCEEEEEeCCC---EEEEeeccCCceeEEeccCCCCccEEEEEECCCC
Confidence 67789999999999997764 44333322 11 345677777643
No 51
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=24.87 E-value=2.6e+02 Score=24.37 Aligned_cols=44 Identities=7% Similarity=-0.049 Sum_probs=27.9
Q ss_pred cccCccccCCCceEEEEEeec-------CCce--------EEEEeCCC---ccceeeeecccc
Q psy3031 68 SWDSTFCAVNPKFLAIIVESA-------GGGA--------FIVLPLNK---YHPALAVEWSLT 112 (136)
Q Consensus 68 g~D~~f~p~n~~~lAv~~e~~-------gGG~--------f~V~pl~~---~~~vld~~~~p~ 112 (136)
.....|+| +.++||++.+++ -+|. +..++... .+.|..++|+|.
T Consensus 132 v~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd 193 (588)
T 2j04_A 132 YHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED 193 (588)
T ss_dssp EEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT
T ss_pred EEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC
Confidence 35577877 788999998765 1221 22222111 368999999983
No 52
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=24.81 E-value=1.9e+02 Score=21.40 Aligned_cols=41 Identities=7% Similarity=0.096 Sum_probs=26.9
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeCCC----------ccceeeeeccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPLNK----------YHPALAVEWSLTF 113 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~----------~~~vld~~~~p~~ 113 (136)
....|.| +.++||+++++ |.+.|-.+.. .++|..++|+|..
T Consensus 217 ~~~~~s~-~g~~l~sgs~d---g~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~ 267 (343)
T 2xzm_R 217 NHLSISP-NGKYIATGGKD---KKLLIWDILNLTYPQREFDAGSTINQIAFNPKL 267 (343)
T ss_dssp EEEEECT-TSSEEEEEETT---CEEEEEESSCCSSCSEEEECSSCEEEEEECSSS
T ss_pred eEEEECC-CCCEEEEEcCC---CeEEEEECCCCcccceeecCCCcEEEEEECCCC
Confidence 3445555 56789998765 3666665521 1578899999853
No 53
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=23.63 E-value=2.2e+02 Score=20.97 Aligned_cols=55 Identities=0% Similarity=-0.186 Sum_probs=29.0
Q ss_pred eEEEecCCCCcccCccccCCCceEEEEEeecCCceEEEEeCCCc---------cceeeeeccccc
Q psy3031 58 AFIVLPLNKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPLNKY---------HPALAVEWSLTF 113 (136)
Q Consensus 58 ~~~Vlpls~~g~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~~---------~~vld~~~~p~~ 113 (136)
....++....-....|.|- .++|+++.++.+.|.+.|.-+... ..+..++|+|..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~-g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg 255 (391)
T 1l0q_A 192 VIDTVKVEAAPSGIAVNPE-GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDG 255 (391)
T ss_dssp EEEEEECSSEEEEEEECTT-SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTS
T ss_pred EEEEEecCCCccceEECCC-CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCC
Confidence 3444443332234455553 456777665445566777665432 344567777643
No 54
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=22.99 E-value=83 Score=23.31 Aligned_cols=41 Identities=20% Similarity=-0.009 Sum_probs=27.8
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeCC---------------------------Cccceeeeeccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPLN---------------------------KYHPALAVEWSLTF 113 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~---------------------------~~~~vld~~~~p~~ 113 (136)
+...|.| +.++||+++++ |.+.|.-+. ..++|..++|+|..
T Consensus 150 ~~~~~~~-~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 150 LSLDWHP-NNVLLAAGCAD---RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSG 217 (377)
T ss_dssp EEEEECT-TSSEEEEEESS---SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTS
T ss_pred EEEEEcC-CCCEEEEEeCC---CEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCC
Confidence 4566777 56799998775 355555542 23578899999854
No 55
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=22.31 E-value=1.1e+02 Score=23.82 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=31.1
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeCCC-----------ccceeeeecccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPLNK-----------YHPALAVEWSLTFD 114 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~-----------~~~vld~~~~p~~d 114 (136)
....|.|.++.+||++..+ |.+.|.-+.. .++|..++|+|...
T Consensus 281 ~~i~~~p~~~~~l~tg~~d---g~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~ 334 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSAD---KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 334 (430)
T ss_dssp EEEEECSSCTTEEEEEETT---SEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCT
T ss_pred EEEEeCCCCCCEEEEEeCC---CeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCC
Confidence 3467788778889998764 4677766543 16899999998654
No 56
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=21.94 E-value=1.1e+02 Score=24.65 Aligned_cols=43 Identities=12% Similarity=-0.042 Sum_probs=27.8
Q ss_pred ccCccccCCCceEEEEEeecCC-ceEEEEeCCCc---------cceeeeecccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGG-GAFIVLPLNKY---------HPALAVEWSLT 112 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gG-G~f~V~pl~~~---------~~vld~~~~p~ 112 (136)
++..|+| |.++||..+.+.++ +.+.++.++.- +.+..++|+|.
T Consensus 153 ~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpD 205 (582)
T 3o4h_A 153 FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPG 205 (582)
T ss_dssp CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTT
T ss_pred ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCC
Confidence 5666766 67888877776554 55666665321 45677777774
No 57
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=21.13 E-value=2.9e+02 Score=21.29 Aligned_cols=54 Identities=9% Similarity=0.035 Sum_probs=33.6
Q ss_pred CCceEEEec---CCCCcccCccccCCCceEEEEEeecCCceEEEEeCCC--------------ccceeeeecccc
Q psy3031 55 GGGAFIVLP---LNKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPLNK--------------YHPALAVEWSLT 112 (136)
Q Consensus 55 gGG~~~Vlp---ls~~g~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~--------------~~~vld~~~~p~ 112 (136)
.|.++..+. +...-....|.| +.++|+++.. .|.+.++.+.. .++|.+++|+|.
T Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~---~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 206 (450)
T 2vdu_B 136 SKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADK---FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKD 206 (450)
T ss_dssp SSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEET---TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEEC
T ss_pred CCceeeeeecccCCCCceEEEEcC-CCCEEEEEeC---CCcEEEEecCCcccccccceeeecccCceEEEEEcCC
Confidence 445555553 223334566666 4578888855 45677775421 167899999996
No 58
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=20.75 E-value=2.5e+02 Score=20.37 Aligned_cols=60 Identities=5% Similarity=0.013 Sum_probs=32.8
Q ss_pred eeecCCCceEEEecC-CCCcccCccccCCCceEEEEEeecCCceEEEEeC-----------CCccceeeeeccccc
Q psy3031 50 IVESAGGGAFIVLPL-NKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPL-----------NKYHPALAVEWSLTF 113 (136)
Q Consensus 50 ~~~~~gGG~~~Vlpl-s~~g~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl-----------~~~~~vld~~~~p~~ 113 (136)
.|+...|-.+..++- ...-....|.|- .++||++++++ .+-+--+ ...++|..++|+|.+
T Consensus 81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~sgs~D~---~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~ 152 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDL---TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152 (304)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSS-SSEEEEEETTS---CEEEEEGGGTTEEEEEECCCCSCEEEEEECTTC
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCC-CCEEEEECCCC---eEEEEECCCCcchhhhhcccCCcEEEEEECCCC
Confidence 344333334444432 222245667664 45788887654 4444332 223689999999864
No 59
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=20.60 E-value=2.4e+02 Score=21.60 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=25.7
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeCCC----------ccceeeeeccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPLNK----------YHPALAVEWSLTF 113 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~----------~~~vld~~~~p~~ 113 (136)
+...|.| +.++|++++++ |.+-|--+.. .++|.+++|+|..
T Consensus 342 ~~v~~~~-~g~~l~s~s~D---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 392 (410)
T 1vyh_C 342 RGVLFHS-GGKFILSCADD---KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA 392 (410)
T ss_dssp EEEEECS-SSSCEEEEETT---TEEEEECCTTSCCCEEEECCSSCEEEEEECSSS
T ss_pred EEEEEcC-CCCEEEEEeCC---CeEEEEECCCCceEEEEcCCCCcEEEEEEcCCC
Confidence 3455655 45688888765 3555554422 2678999998854
No 60
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=20.55 E-value=1.9e+02 Score=23.73 Aligned_cols=64 Identities=5% Similarity=0.032 Sum_probs=33.9
Q ss_pred EeeecCCCceEEEecCCCC----cccCccccCCCceEEEEEeecCC------ceEEEEeCCCc------------cceee
Q psy3031 49 IIVESAGGGAFIVLPLNKS----SWDSTFCAVNPKFLAIIVESAGG------GAFIVLPLNKY------------HPALA 106 (136)
Q Consensus 49 v~~~~~gGG~~~Vlpls~~----g~D~~f~p~n~~~lAv~~e~~gG------G~f~V~pl~~~------------~~vld 106 (136)
..|+...|-....+..... -.+..|+| |.++||+++++.+. +.+.+..++.- ..+..
T Consensus 40 ~~~d~~~g~~~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~ 118 (723)
T 1xfd_A 40 RLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQY 118 (723)
T ss_dssp EEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSB
T ss_pred EEEECCCCcEEEEeccccccccccceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccc
Confidence 3455433434444443321 24456666 56788888764332 45555554321 12667
Q ss_pred eeccccc
Q psy3031 107 VEWSLTF 113 (136)
Q Consensus 107 ~~~~p~~ 113 (136)
++|||.-
T Consensus 119 ~~~SPdG 125 (723)
T 1xfd_A 119 AGWGPKG 125 (723)
T ss_dssp CCBCSST
T ss_pred cEECCCC
Confidence 8888754
No 61
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=20.41 E-value=2.4e+02 Score=20.15 Aligned_cols=41 Identities=5% Similarity=0.147 Sum_probs=27.6
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEeCCC----------ccceeeeeccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLPLNK----------YHPALAVEWSLTF 113 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~pl~~----------~~~vld~~~~p~~ 113 (136)
.+..|.| +.++||+++++ |.+.|.-++. ..+|..++|+|..
T Consensus 69 ~~~~~~~-~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 119 (312)
T 4ery_A 69 SDVAWSS-DSNLLVSASDD---KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 119 (312)
T ss_dssp EEEEECT-TSSEEEEEETT---SEEEEEETTTCCEEEEEECCSSCEEEEEECSSS
T ss_pred EEEEEcC-CCCEEEEECCC---CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence 4566777 56788888764 4666655433 2678889998854
No 62
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=20.04 E-value=95 Score=23.27 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=26.2
Q ss_pred ccCccccCCCceEEEEEeecCCceEEEEe-----------C-CCccceeeeeccccc
Q psy3031 69 WDSTFCAVNPKFLAIIVESAGGGAFIVLP-----------L-NKYHPALAVEWSLTF 113 (136)
Q Consensus 69 ~D~~f~p~n~~~lAv~~e~~gGG~f~V~p-----------l-~~~~~vld~~~~p~~ 113 (136)
....|.| +.++||+++.++ .+.+-- + ....+|..++|+|..
T Consensus 65 ~~~~~sp-~g~~l~s~s~D~---~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 117 (345)
T 3fm0_A 65 RKVAWSP-CGNYLASASFDA---TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG 117 (345)
T ss_dssp EEEEECT-TSSEEEEEETTS---CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS
T ss_pred EEEEECC-CCCEEEEEECCC---cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC
Confidence 4566777 567899987654 222221 1 223789999999854
Done!