RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3031
         (136 letters)



>gnl|CDD|149883 pfam08953, DUF1899, Domain of unknown function (DUF1899).  This
          set of domains is found in various eukaryotic proteins.
          Function is unknown.
          Length = 65

 Score =  123 bits (311), Expect = 3e-38
 Identities = 45/64 (70%), Positives = 56/64 (87%)

Query: 4  RVVRSSKFRHVYGTALKREFCYDNIRVSKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLP 63
          R VRSSKFRHV+G   K+E CY++IR+SK++WDS FCAVNPKFLA+I E++GGGAF VLP
Sbjct: 1  RFVRSSKFRHVFGQPAKKEQCYEDIRISKNAWDSNFCAVNPKFLAVIWEASGGGAFAVLP 60

Query: 64 LNKS 67
          LNK+
Sbjct: 61 LNKT 64


>gnl|CDD|220080 pfam08954, DUF1900, Domain of unknown function (DUF1900).  This
           domain is predominantly found in the structural protein
           coronin, and is duplicated in some sequences. It has no
           known function.
          Length = 136

 Score = 51.4 bits (124), Expect = 3e-09
 Identities = 15/27 (55%), Positives = 19/27 (70%)

Query: 110 SLTFDTSNGVMFPLYDPDTNLVYLCGK 136
           +   DTS+GV+ P YD DT L+YL GK
Sbjct: 4   TEELDTSSGVLIPFYDEDTGLLYLAGK 30


>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
          Length = 493

 Score = 31.4 bits (71), Expect = 0.12
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 9  SKFRHVYGTALKREFCYDNIRVSKSSWD-STFCAVNPKFLAIIVESAGGGA 58
          S+FRH  G   + +  + N+  S + WD S   A N +F+A+  +  G  A
Sbjct: 4  SRFRHTQGVPARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTA 54



 Score = 30.2 bits (68), Expect = 0.32
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 114 DTSNGVMFPLYDPDTNLVYLCGK 136
           D S+ +  P +D DTNL+Y+  K
Sbjct: 257 DQSSALFIPFFDEDTNLLYIGSK 279


>gnl|CDD|234520 TIGR04246, nitrous_NosZ_Gp, nitrous-oxide reductase, Sec-dependent.
            This model represents the nitrous-oxide reductase
           protein NosZ as characterized in Geobacillus
           thermodenitrificans. In contrast to the related form in
           Pseudomonas stutzeri, this version lacks a recognizable
           twin-arginine translocation (TAT) signal at the
           N-terminus. Consequently, its accessory protein may
           differ. Some members of this family have an additional
           cytochrome c-like domain at the C-terminus.
          Length = 578

 Score = 28.9 bits (65), Expect = 0.88
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 4   RVVRSSKFRHVYGTALKREFCYDNIRV 30
           R+ R     HVY TA++  F  DNI V
Sbjct: 477 RIERKGNEVHVYMTAIRSHFTPDNIEV 503


>gnl|CDD|164934 PHA02538, N, capsid protein; Provisional.
          Length = 348

 Score = 27.4 bits (61), Expect = 2.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 111 LTFDTSNGVMFPLYDPDTNLVYLCG 135
           L  D +N ++ P +  D +LV + G
Sbjct: 209 LVMDLTNNLIDPWHQDDPDLVVIVG 233


>gnl|CDD|215242 PLN02441, PLN02441, cytokinin dehydrogenase.
          Length = 525

 Score = 27.2 bits (61), Expect = 3.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 50  IVESAGGGAFIVLPLNKSSWDSTFCAVNP 78
           I+     G  +V PLN+S WD+   AV P
Sbjct: 404 ILLDGTNGPILVYPLNRSKWDNRTSAVIP 432


>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
          Length = 568

 Score = 26.8 bits (59), Expect = 3.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 110 SLTFDTSNGVMFPLYDPDTNLVYLCGK 136
           +++ D ++  + P YD  T L+YL GK
Sbjct: 256 TMSIDNASAPLIPHYDESTGLIYLIGK 282


>gnl|CDD|215277 PLN02501, PLN02501, digalactosyldiacylglycerol synthase.
          Length = 794

 Score = 26.9 bits (59), Expect = 4.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 6/35 (17%)

Query: 21  REFCYDNIRVSKSSWD---STFC---AVNPKFLAI 49
           R +C+  +R+S ++ D   S  C    VNPKFL I
Sbjct: 496 RAYCHKVLRLSAATQDLPKSVICNVHGVNPKFLKI 530


>gnl|CDD|166487 PLN02846, PLN02846, digalactosyldiacylglycerol synthase.
          Length = 462

 Score = 26.7 bits (59), Expect = 4.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 6/33 (18%)

Query: 23  FCYDNIRVSKSSWD---STFC---AVNPKFLAI 49
           +C+  IR+S ++ D   S  C    VNPKFL I
Sbjct: 180 YCHKVIRLSAATQDYPRSIICNVHGVNPKFLEI 212


>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional.
          Length = 468

 Score = 26.7 bits (59), Expect = 5.0
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 10/50 (20%)

Query: 56  GGAF---IVLPLNKSSWDSTFCAVNPKFLAII-VES------AGGGAFIV 95
           GG F   I+L L K++ D     V  KF A   VE+      AG GAF+V
Sbjct: 407 GGGFGGCIILLLKKNAVDRVVAHVREKFKARFGVENDVYPVVAGDGAFVV 456


>gnl|CDD|149420 pfam08351, DUF1726, Domain of unknown function (DUF1726).  This
          domain of unknown function is often found at the
          N-terminus of proteins containing pfam05127. Its fold
          resembles that of pfam05127, but it does not appear to
          bind ATP.
          Length = 92

 Score = 25.6 bits (57), Expect = 5.6
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 39 FCAVNPKFLAIIVESAGGGAFIVLPLNK-SSWDS 71
          F  + P  L  +VE+  GG  I+L L    SW  
Sbjct: 20 FEDLTPNDLGRLVETVRGGGLIILLLPPLESWKQ 53


>gnl|CDD|204184 pfam09265, Cytokin-bind, Cytokinin dehydrogenase 1, FAD and
           cytokinin binding.  Members of this family adopt an
           alpha+beta sandwich structure with an antiparallel
           beta-sheet, in a ferredoxin-like fold. They are
           predominantly found in plant cytokinin dehydrogenase 1,
           where they are capable of binding both FAD and cytokinin
           substrates. The substrate displays a 'plug-into-socket'
           binding mode that seals the catalytic site and precisely
           positions the carbon atom undergoing oxidation in close
           contact with the reactive locus of the flavin.
          Length = 280

 Score = 26.1 bits (58), Expect = 6.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 57  GAFIVLPLNKSSWDSTFCAVNP 78
           G  +V P+N+S WD    AV P
Sbjct: 171 GPILVYPMNRSKWDDRMSAVIP 192


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.138    0.439 

Gapped
Lambda     K      H
   0.267   0.0757    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,005,700
Number of extensions: 617943
Number of successful extensions: 670
Number of sequences better than 10.0: 1
Number of HSP's gapped: 670
Number of HSP's successfully gapped: 20
Length of query: 136
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 49
Effective length of database: 7,078,804
Effective search space: 346861396
Effective search space used: 346861396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.5 bits)