RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3031
(136 letters)
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural
protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Length = 402
Score = 115 bits (289), Expect = 1e-31
Identities = 43/68 (63%), Positives = 58/68 (85%)
Query: 1 MSFRVVRSSKFRHVYGTALKREFCYDNIRVSKSSWDSTFCAVNPKFLAIIVESAGGGAFI 60
MS +VVRSSKFRHV+G K + CY+++RVS+++WDS FCAVNPKF+A+I E++GGGAF+
Sbjct: 1 MSRQVVRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFL 60
Query: 61 VLPLNKSS 68
VLPL K+
Sbjct: 61 VLPLGKTG 68
Score = 35.4 bits (82), Expect = 0.003
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 114 DTSNGVMFPLYDPDTNLVYLCGK 136
DTS+GV+ P +DPDTN+VYLCGK
Sbjct: 265 DTSSGVLLPFFDPDTNIVYLCGK 287
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.17
Identities = 16/111 (14%), Positives = 28/111 (25%), Gaps = 33/111 (29%)
Query: 25 YDNIRVSKSSWD--------------STFCAVNPKFLAIIVESAGGGAFIVLPLNKSSWD 70
Y + ++ W+ NP L I G
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG-------------- 1681
Query: 71 STFCAVNPKFLAIIVESAGGGAFIVLPLNKYHPALAVEWSLTFDTSNGVMF 121
+ + A+I E+ G + K S TF + G++
Sbjct: 1682 ---KRIRENYSAMIFETIVDGKLKTEKIFK--EINEHSTSYTFRSEKGLLS 1727
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5,
subtype, thermophilic, thermophIle, endoglucanase; 1.12A
{Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A
Length = 305
Score = 28.8 bits (64), Expect = 0.51
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 75 AVNPKFLAIIVESAGGGAFIVLPLNKYHPALAVEWSLTFDTSNGVMFPLYDPDTNLVY 132
+N + I + +I + N + A T+ N M L DP ++Y
Sbjct: 144 NLNQAAIDGIRSAGATSQYIFVEGNSWTGAW------TWTNVNDNMKSLTDPSDKIIY 195
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 0.91
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 13/31 (41%)
Query: 85 VESAGGGAFIVLPLNKYH----PALAVEWSL 111
++++ L Y PALA++ ++
Sbjct: 25 LQAS---------LKLYADDSAPALAIKATM 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 1.1
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 30/93 (32%)
Query: 40 CAVNPKFLAIIVESAGGGAFIVLPLNKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPLN 99
NP+ L+II ES + ++WD + VN L I+ES+ LN
Sbjct: 323 LTTNPRRLSIIAES--------IRDGLATWD-NWKHVNCDKLTTIIESS---------LN 364
Query: 100 KYHPALAVE--WSLTFDTSNGVMFPLYDPDTNL 130
PA + L +FP P ++
Sbjct: 365 VLEPAEYRKMFDRL-------SVFP---PSAHI 387
>4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO
PSI-biology, NEW YORK structural genomics research
consorti hydrolase; 2.00A {Pseudomonas aeruginosa}
Length = 451
Score = 27.5 bits (62), Expect = 1.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 113 FDTSNGVMFPLYDPDTNLVY 132
FD S P+YDP + L+Y
Sbjct: 377 FDLSGLAQQPVYDPVSQLIY 396
>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel,
beta-fold, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.10A {Oleispira antarctica}
Length = 468
Score = 27.6 bits (62), Expect = 1.5
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 113 FDTSNGVMFPLYDPDTNLVY 132
D + P++DP +++VY
Sbjct: 402 IDLNTLSSQPVFDPVSHMVY 421
>4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK
structural genomics research consortium; 1.55A
{Xanthomonas campestris PV}
Length = 472
Score = 27.2 bits (61), Expect = 1.7
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 113 FDTSNGVMFPLYDPDTNLVY 132
D S PL+ + L+Y
Sbjct: 384 VDLSALETQPLHHVLSQLIY 403
>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural
genomics, PSI-biology; HET: MSE MTA; 1.80A
{Chromobacterium violaceum} PDB: 4f0s_A*
Length = 447
Score = 27.1 bits (61), Expect = 1.8
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 113 FDTSNGVMFPLYDPDTNLVY 132
D + P +DP +++VY
Sbjct: 375 LDLAQLETAPAFDPISHVVY 394
>2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II,
amidohydrolase, sargasso SEA, enviro sample, structural
genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9
Length = 492
Score = 27.3 bits (61), Expect = 2.0
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 113 FDTSNGVMFPLYDPDTNLVY 132
+ + F L+DP V
Sbjct: 417 YRLDDPRYFGLHDPAIGPVA 436
>3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A
{Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A*
Length = 456
Score = 27.2 bits (61), Expect = 2.0
Identities = 3/20 (15%), Positives = 7/20 (35%)
Query: 113 FDTSNGVMFPLYDPDTNLVY 132
+ ++DP L+
Sbjct: 394 WRLDGVDRVGVHDPAIGLIM 413
>1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase,
PSI, protein structure initiative; 1.50A {Thermotoga
maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A
Length = 406
Score = 26.7 bits (60), Expect = 2.7
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 113 FDTSNGVMFPLYDPDTNLVY 132
D MFP+ + +LV+
Sbjct: 343 IDLDLPEMFPVQNIKNHLVH 362
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase,
two-component regulatory system; 1.57A {Thermotoga
maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Length = 152
Score = 26.0 bits (58), Expect = 3.0
Identities = 10/59 (16%), Positives = 14/59 (23%), Gaps = 29/59 (49%)
Query: 47 LAI---IVESAGGGAFIVLPLNKSSWDSTFCAVNPKFLAIIVESAGGGA--FIVLPLNK 100
L+I I+E GG I E+ G +P
Sbjct: 115 LSICRKIIEDEHGGK------------------------IWTENRENGVVFIFEIPKTP 149
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain,
hydrolysis of MIS-charged trnas, benzoxaborole,
anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB:
2wfe_A*
Length = 261
Score = 26.1 bits (57), Expect = 4.5
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 8/97 (8%)
Query: 38 TFCAVNPKFLAIIVESAGGGAFIV---LPLNKSSWDSTFCAVNPKFLAIIVESAGGGAFI 94
T C V+PK + ++ G FI N S + T K L I G+ I
Sbjct: 49 TCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRI 108
Query: 95 VLPL--NKYHPALAVEWSLTFDTSNGVMF--PLYDPD 127
P NK L +E + GV+ P PD
Sbjct: 109 DAPYAVNKNLRVLPMET-VLATKGTGVVTCVPSDSPD 144
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase,
phosphoprotein, editing domain, nucleotide-binding,
hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Length = 252
Score = 25.3 bits (55), Expect = 8.0
Identities = 25/100 (25%), Positives = 32/100 (32%), Gaps = 14/100 (14%)
Query: 38 TFCAVNPKFLAIIVESAGGGAFIV---LPLNKSSWDSTFCAVNPKFLAIIVESAGGGAFI 94
T C V P I E+ G FI N S T + ++ GA +
Sbjct: 46 TNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILGASL 105
Query: 95 VLPLNKYH-----PALAVEWSLTFDTSNGVMF--PLYDPD 127
PL Y P L + D GV+ P PD
Sbjct: 106 SAPLTSYKVIYVLPMLTI----KEDKGTGVVTSVPSDSPD 141
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold,
cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A
{Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Length = 677
Score = 25.4 bits (55), Expect = 8.5
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 108 EWSLTFDTSNGVMFPLYDPDTNLVYL 133
+W +D + N +Y+
Sbjct: 234 KWWEAGGGGTMWDSMTFDAELNTMYV 259
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.439
Gapped
Lambda K H
0.267 0.0798 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,141,892
Number of extensions: 118120
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 21
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.7 bits)