RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3031
         (136 letters)



>d1f1sa2 b.1.18.2 (A:171-248) Hyaluronate lyase precatalytic domain
           {Streptococcus agalactiae [TaxId: 1311]}
          Length = 78

 Score = 26.5 bits (58), Expect = 0.43
 Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 6/43 (13%)

Query: 94  IVLPLNKYHPALAVEWSLTFDTS------NGVMFPLYDPDTNL 130
           +   LNK +     ++  T           G+++P     T +
Sbjct: 15  VNTALNKNYVFNKADYQYTLTNPSLGKIVGGILYPNATGSTTV 57


>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea
           mays) [TaxId: 4577]}
          Length = 289

 Score = 26.8 bits (59), Expect = 0.85
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 49  IIVESAGGGAFIVLPLNKSSWDSTFCAVNP 78
           I+  +   G  IV PLNKS WD    A  P
Sbjct: 173 ILQGTDIVGPLIVYPLNKSMWDDGMSAATP 202


>d1vdwa_ e.7.1.1 (A:) Archaeal inositol
           monophosphatase/fructose-1,6-bisphosphatase {Archaeon
           Pyrococcus horikoshii [TaxId: 53953]}
          Length = 253

 Score = 24.6 bits (52), Expect = 5.3
 Identities = 11/92 (11%), Positives = 29/92 (31%), Gaps = 6/92 (6%)

Query: 1   MSFRVVRSSKFRHVYGTALKREFCYDNIRVSKSSWDSTFCAVNPKFLAIIVESAGG---- 56
            +  + +  + R +   AL+  +       +     +     +     +I   AG     
Sbjct: 158 GTKIIDKVKRTRTLGAIALELAYLARGALDAVVDIRNYLRPTDIAAGVVIAREAGAIVKD 217

Query: 57  --GAFIVLPLNKSSWDSTFCAVNPKFLAIIVE 86
             G  + +  + +   +   A N + L  I+ 
Sbjct: 218 LDGKDVEITFSATEKVNIIAANNEELLETILR 249


>d1xi6a_ e.7.1.1 (A:) Archaeal inositol
           monophosphatase/fructose-1,6-bisphosphatase {Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 249

 Score = 24.2 bits (51), Expect = 7.1
 Identities = 12/81 (14%), Positives = 22/81 (27%), Gaps = 6/81 (7%)

Query: 11  FRHVYGTALKREFCYDNIRVSKSSWDSTFCAVNPKFLAIIVESAGG------GAFIVLPL 64
            R +   AL+  +                   +     II + AG       G  I +  
Sbjct: 169 TRTLGAIALELAYLAMGALDGVVDVRKYVRPTDIAAGTIIAKEAGALIKDSAGKDIDISF 228

Query: 65  NKSSWDSTFCAVNPKFLAIIV 85
           N +         + + L  I+
Sbjct: 229 NATDRLDVIAVNSEELLKTIL 249


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.439 

Gapped
Lambda     K      H
   0.267   0.0688    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 532,109
Number of extensions: 22678
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 11
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.4 bits)