Query psy3035
Match_columns 161
No_of_seqs 115 out of 344
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 23:50:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nxq_A Angiotensin-converting 100.0 4.8E-55 1.6E-59 403.4 14.5 157 1-158 118-278 (629)
2 2x96_A Angiotensin converting 100.0 7.5E-45 2.6E-49 333.3 16.1 158 1-158 107-268 (598)
3 1uze_A Angiotensin converting 100.0 4.4E-37 1.5E-41 280.2 13.4 154 1-157 106-263 (589)
4 1r42_A Angiotensin I convertin 100.0 4.3E-37 1.5E-41 280.7 12.0 155 1-157 123-291 (615)
5 3ahn_A Oligopeptidase, PZ pept 98.8 6.6E-08 2.3E-12 86.7 12.4 98 21-124 157-262 (564)
6 3ce2_A Putative peptidase; str 98.1 2.4E-05 8.2E-10 71.3 12.5 99 21-124 208-309 (618)
7 2qr4_A Peptidase M3B, oligoend 98.1 3.9E-05 1.3E-09 69.3 13.0 99 21-124 176-277 (587)
8 2o3e_A Neurolysin; thermolysin 97.7 0.00025 8.7E-09 65.3 12.0 91 25-116 223-321 (678)
9 3sks_A Putative oligoendopepti 97.4 0.0012 4E-08 59.8 10.6 88 21-110 160-255 (567)
10 2o36_A ThiMet oligopeptidase; 97.1 0.0046 1.6E-07 56.9 12.3 92 25-117 207-306 (674)
11 1y79_1 Peptidyl-dipeptidase DC 96.9 0.0055 1.9E-07 56.6 10.7 84 25-109 223-314 (680)
12 1ka2_A M32 carboxypeptidase; h 86.7 3.1 0.00011 37.5 9.0 78 38-115 113-192 (499)
13 3hq2_A Bacillus subtilis M32 c 84.7 4.6 0.00016 36.5 9.1 71 40-110 113-185 (501)
14 3fy6_A Integron cassette prote 83.4 1.9 6.5E-05 31.8 5.0 57 25-85 60-125 (126)
15 3dwc_A TCMCP-1, metallocarboxy 82.9 9.7 0.00033 34.4 10.4 93 41-134 113-209 (505)
16 3hoa_A Thermostable carboxypep 76.5 5.1 0.00018 36.2 6.5 70 42-111 117-197 (509)
17 2a8e_A Hypothetical protein YK 44.8 15 0.00051 29.9 3.0 23 87-109 184-206 (220)
18 3k6g_A Telomeric repeat-bindin 43.2 5.6 0.00019 29.1 0.3 17 110-126 73-89 (111)
19 3fx7_A Putative uncharacterize 42.4 24 0.00082 25.0 3.5 59 58-119 17-77 (94)
20 1yz4_A DUSP15, dual specificit 41.5 30 0.001 24.8 4.1 27 97-123 133-159 (160)
21 1qp6_A Protein (alpha2D); de n 40.7 38 0.0013 19.5 3.5 27 87-113 2-33 (35)
22 1xaw_A Occludin; coiled-coil, 38.8 84 0.0029 23.7 6.2 90 21-119 28-127 (140)
23 3zwl_E Eukaryotic translation 35.8 34 0.0012 21.5 3.1 18 38-55 18-35 (50)
24 2lfw_B NEPR anti sigma factor; 33.5 24 0.00081 23.3 2.1 23 112-137 27-49 (62)
25 1td6_A F10_ORF294, hypothetica 30.6 1.1E+02 0.0036 25.7 6.0 77 26-102 23-99 (306)
26 1r48_A Proline/betaine transpo 27.7 90 0.0031 17.8 4.7 27 89-120 4-30 (33)
27 3flv_A Acyl-COA-binding domain 26.9 68 0.0023 23.4 3.9 37 41-77 79-115 (119)
28 4ham_A LMO2241 protein; struct 26.5 31 0.0011 24.5 2.0 28 103-134 13-40 (134)
29 1or7_C Sigma-E factor negative 24.8 77 0.0026 21.8 3.7 29 26-58 18-46 (90)
30 2hnh_A DNA polymerase III alph 23.5 94 0.0032 29.8 5.1 45 46-105 707-751 (910)
31 1oef_A Apolipoprotein E; glyco 23.1 36 0.0012 18.1 1.3 16 89-104 8-23 (26)
32 3epy_A Acyl-COA-binding domain 21.2 70 0.0024 21.9 2.8 32 41-72 55-86 (89)
33 3fh3_A Putative ECF-type sigma 21.2 62 0.0021 25.0 2.8 53 55-111 37-94 (158)
34 3t0y_B NEPR; sigma factor, ant 21.2 14 0.00048 24.9 -0.8 24 111-137 32-55 (68)
35 3twe_A Alpha4H; unknown functi 20.7 1.1E+02 0.0039 16.5 4.1 16 95-110 3-18 (27)
36 3fp5_A Acyl-COA binding protei 20.5 70 0.0024 22.8 2.8 36 41-76 59-94 (106)
37 3n6x_A Putative glutathionylsp 20.4 72 0.0025 28.4 3.4 44 97-140 82-125 (474)
38 1yz7_A Probable translation in 20.2 2.5E+02 0.0085 21.7 6.2 53 63-135 17-71 (188)
39 3l9t_A Putative uncharacterize 20.1 45 0.0015 27.2 1.9 41 60-100 36-81 (240)
No 1
>3nxq_A Angiotensin-converting enzyme; dicarboxy zinc metallopeptidase, hydrolase, hydrolase-hydrol inhibitor complex; HET: RX4 NAG FUC BMA P6G PG4; 1.99A {Homo sapiens} PDB: 2xyd_A* 2c6n_A* 2c6f_A*
Probab=100.00 E-value=4.8e-55 Score=403.42 Aligned_cols=157 Identities=37% Similarity=0.752 Sum_probs=150.1
Q ss_pred CccccccceeecCCCCCCCCCCCchHHHHHHhhCCCHHHHHHHHHHHHHhhchhHHHhHHHHHHhHHHHHHHcCCcChHH
Q psy3035 1 MESIYSTAKICQHKNEKNCNLTLEPELTEIFIGSRDPEELRHYWTEFRKKSGKQVRNHYKQYVDLENEVAVKNNFTDAAE 80 (161)
Q Consensus 1 M~~iYst~kvC~~~~~~~C~l~lepdl~~Ima~Srd~~eL~~~W~~Wr~~vg~~~r~~y~~~V~L~N~aA~~nGf~d~g~ 80 (161)
|++||||||||.+++++.| +.|+|||+.||++|||+++|+++|++||+++|+++|++|.+||+|.|+|||.|||+|+|+
T Consensus 118 m~~iy~~akvc~~~g~~~c-l~L~pdL~~im~~SrD~~er~~aW~~wr~~~g~~l~~~y~~~V~LrneaAk~~Gf~d~~e 196 (629)
T 3nxq_A 118 MSRIYSTAKVCLPQKTATC-WSLDPDLTNILASSRSYAMLLFAWEGWHNAAGIPLKPLYEDFTALSNEAYKQDGFTDTGA 196 (629)
T ss_dssp HHHHHHHCEEEC---CCCE-EETTTHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSSHHH
T ss_pred HHHHhhceEEecCCCCccc-ccchhHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 7899999999987666679 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccccccc----ccccccccCCCCCC
Q psy3035 81 YWLDAYDTPDFRDQVAKLWDQIRPLYLQIHAYTRRRLNEKYGDKVVNRRGPIPAHLLGSCRQ----TTLEAEKPTKGAAP 156 (161)
Q Consensus 81 ~Wr~~Ye~~~~~~~~e~lw~qi~PLY~qLHayVR~~L~~~YG~~~v~~~gpIPAHLLGnmWa----ni~~~~~P~p~~~~ 156 (161)
|||+.||.++|.+.+++||++|+|||++||||||++|+++||+++|+.+||||||||||||| |||++++|||+++.
T Consensus 197 ~wR~~Ye~~~~~~~~e~l~~~i~PLy~~Lha~vR~~L~~~Yg~~~i~~~g~iPaHLlgnmw~q~W~~~yd~~~Pf~~~~~ 276 (629)
T 3nxq_A 197 YWRSWYNSPTFEDDLEHLYQQLEPLYLNLHAFVRRALHRRYGDRYINLRGPIPAHLLGDMWAQSWENIYDMVVPFPDKPN 276 (629)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCTTSCEETTSSSSTTSCCCGGGHHHHCSCTTSCC
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccccCCCCCcChhhccchhhhchhhhcccccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999998 99999999999887
Q ss_pred CC
Q psy3035 157 EE 158 (161)
Q Consensus 157 ~~ 158 (161)
+|
T Consensus 277 ~d 278 (629)
T 3nxq_A 277 LD 278 (629)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 2
>2x96_A Angiotensin converting enzyme; hydrolase, ACE inhibitor, zinc metallopeptidase; HET: RX3 EPE NAG BMA MAN; 1.85A {Drosophila melanogaster} PDB: 2x8z_A* 2x90_A* 2x91_A* 2x8y_A* 2x97_A* 2xhm_A* 3zqz_A* 2x94_A* 2x92_A* 2x93_A* 2x95_A* 1j36_A* 1j37_A* 1j38_A
Probab=100.00 E-value=7.5e-45 Score=333.26 Aligned_cols=158 Identities=43% Similarity=0.810 Sum_probs=151.5
Q ss_pred CccccccceeecCCCCCCCCCCCchHHHHHHhhCCCHHHHHHHHHHHHHhhchhHHHhHHHHHHhHHHHHHHcCCcChHH
Q psy3035 1 MESIYSTAKICQHKNEKNCNLTLEPELTEIFIGSRDPEELRHYWTEFRKKSGKQVRNHYKQYVDLENEVAVKNNFTDAAE 80 (161)
Q Consensus 1 M~~iYst~kvC~~~~~~~C~l~lepdl~~Ima~Srd~~eL~~~W~~Wr~~vg~~~r~~y~~~V~L~N~aA~~nGf~d~g~ 80 (161)
|+++|++++||.+++.+.|+|+|+|+|.++|++|+|+++++++|++||+++|.++++.|.++|+|.|++|+.|||.|.++
T Consensus 107 ~~~~y~~a~v~~~~~~~~~~l~l~~~l~~~~a~s~d~~~~~~aW~~~r~~~~~~~~~~~~~lV~L~~e~A~~~G~~~~~d 186 (598)
T 2x96_A 107 MESNFAKVKVCDYKDSTKCDLALDPEIEEVISKSRDHEELAYYWREFYDKAGTAVRSQFERYVELNTKAAKLNNFTSGAE 186 (598)
T ss_dssp HHHHHHHCCBCCSSCTTCCCBCTTTHHHHHHHHCCCHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHhccccccCCccccccCCCHHHHHHHHHCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 67899999999987777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccccccc----ccccccccCCCCCC
Q psy3035 81 YWLDAYDTPDFRDQVAKLWDQIRPLYLQIHAYTRRRLNEKYGDKVVNRRGPIPAHLLGSCRQ----TTLEAEKPTKGAAP 156 (161)
Q Consensus 81 ~Wr~~Ye~~~~~~~~e~lw~qi~PLY~qLHayVR~~L~~~YG~~~v~~~gpIPAHLLGnmWa----ni~~~~~P~p~~~~ 156 (161)
+||+.||.+++.+.+++||++|+|||.+||||||++|.++||.++|+.+||||||||||||| ++||++.|||.++.
T Consensus 187 ~~r~~YE~~~~~~~ld~i~~~l~pl~~~Lh~~vr~~l~~~yg~~~~~~~~~~p~hllg~mw~q~w~~~~dl~~pfp~~~~ 266 (598)
T 2x96_A 187 AWLDEYEDDTFEQQLEDIFADIRPLYQQIHGYVRFRLRKHYGDAVVSETGPIPMHLLGNMWAQQWSEIADIVSPFPEKPL 266 (598)
T ss_dssp HHHGGGCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCSSSCEEGGGSSSTTCSCCGGGHHHHCSCTTSCC
T ss_pred HHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccCCCCCCchhhhcchhhccccchhhccCCCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999 68989999998764
Q ss_pred CC
Q psy3035 157 EE 158 (161)
Q Consensus 157 ~~ 158 (161)
+|
T Consensus 267 ~d 268 (598)
T 2x96_A 267 VD 268 (598)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 3
>1uze_A Angiotensin converting enzyme; metalloprotease, inhibitor, enalaprilat, zinc dependant peptidase, anti-hypertensive drug; HET: EAL; 1.82A {Homo sapiens} SCOP: d.92.1.5 PDB: 1o8a_A* 1o86_A* 1uzf_A* 2oc2_A* 2ydm_A* 2iux_A* 2iul_A* 2xy9_A* 3bkk_A* 3bkl_A* 3l3n_A*
Probab=100.00 E-value=4.4e-37 Score=280.19 Aligned_cols=154 Identities=38% Similarity=0.771 Sum_probs=145.3
Q ss_pred CccccccceeecCCCCCCCCCCCchHHHHHHhhCCCHHHHHHHHHHHHHhhchhHHHhHHHHHHhHHHHHHHcCCcChHH
Q psy3035 1 MESIYSTAKICQHKNEKNCNLTLEPELTEIFIGSRDPEELRHYWTEFRKKSGKQVRNHYKQYVDLENEVAVKNNFTDAAE 80 (161)
Q Consensus 1 M~~iYst~kvC~~~~~~~C~l~lepdl~~Ima~Srd~~eL~~~W~~Wr~~vg~~~r~~y~~~V~L~N~aA~~nGf~d~g~ 80 (161)
|+++|++++||.. .+.| ++++|+|..+|++|+|+++++++|++||++.+.++++.|.++|+|.|++|+.+||.+.++
T Consensus 106 ~~~~~~~~~i~~~--~~~~-l~~~~~l~~~~~~~~d~~~r~~aw~~~~~~~~~~~~~~~~~lv~l~~e~A~~~G~~~~~d 182 (589)
T 1uze_A 106 METTYSVATVCHP--NGSC-LQLEPDLTNVMATSRKYEDLLWAWEGWRDKAGRAILQFYPKYVELINQAARLNGYVDAGD 182 (589)
T ss_dssp HHHHHHHCEEECS--SSCE-EETTTHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTTTHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHhcccCC--Cccc-cccchhHHHHHHhCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 5688999999953 4469 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccccccc----ccccccccCCCCCC
Q psy3035 81 YWLDAYDTPDFRDQVAKLWDQIRPLYLQIHAYTRRRLNEKYGDKVVNRRGPIPAHLLGSCRQ----TTLEAEKPTKGAAP 156 (161)
Q Consensus 81 ~Wr~~Ye~~~~~~~~e~lw~qi~PLY~qLHayVR~~L~~~YG~~~v~~~gpIPAHLLGnmWa----ni~~~~~P~p~~~~ 156 (161)
+||..||.+++.+.+++||++|+|+|.+||+|||++|+++||.+.++.+||||+|||||||+ ++|+++.|||.++.
T Consensus 183 ~~r~~ye~~~~~~~ld~l~~~l~p~~~~Lh~y~r~kl~~~yg~~~~~~~~~~p~hllg~~~~~~w~~~~~~~~p~~~~~~ 262 (589)
T 1uze_A 183 SWRSMYETPSLEQDLERLFQELQPLYLNLHAYVRRALHRHYGAQHINLEGPIPAHLLGNMWAQTWSNIYDLVVPFPSAPS 262 (589)
T ss_dssp HHHGGGCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHCTTTCCTTSCEETTSSSSTTSSCCGGGHHHHCSCTTSCC
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccCCCCCCchhhhcchhhcchhhhhhhhcCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999988 78888999998665
Q ss_pred C
Q psy3035 157 E 157 (161)
Q Consensus 157 ~ 157 (161)
+
T Consensus 263 ~ 263 (589)
T 1uze_A 263 M 263 (589)
T ss_dssp C
T ss_pred c
Confidence 4
No 4
>1r42_A Angiotensin I converting enzyme 2; zinc metallopeptidase domain, Na open conformation, chloride ION binding site; HET: NAG; 2.20A {Homo sapiens} SCOP: d.92.1.5 PDB: 1r4l_A* 3sci_A 3scj_A 2ajf_A* 3kbh_A* 3d0g_A* 3d0h_A* 3d0i_A* 3sck_A 3scl_A
Probab=100.00 E-value=4.3e-37 Score=280.74 Aligned_cols=155 Identities=36% Similarity=0.660 Sum_probs=145.4
Q ss_pred CccccccceeecCCCCCCCCCCCchHHHHHHhhCCCHHHHHHHHHHHHHhhchhHHHhHHHHHHhHHHHHHHcCCcChHH
Q psy3035 1 MESIYSTAKICQHKNEKNCNLTLEPELTEIFIGSRDPEELRHYWTEFRKKSGKQVRNHYKQYVDLENEVAVKNNFTDAAE 80 (161)
Q Consensus 1 M~~iYst~kvC~~~~~~~C~l~lepdl~~Ima~Srd~~eL~~~W~~Wr~~vg~~~r~~y~~~V~L~N~aA~~nGf~d~g~ 80 (161)
|+++|++++||.+++.+.| ++++|++..+|++|+|+++++++|++||++.+.++++.|.++|+|.|++|+.+||++.++
T Consensus 123 ~~~~~~~~~i~~~~~~~~~-l~~~p~l~~~~~~s~d~~~R~~aW~~~r~~~~~~~~~~l~~~v~l~~e~A~~~G~~~~~d 201 (615)
T 1r42_A 123 MSTIYSTGKVCNPDNPQEC-LLLEPGLNEIMANSLDYNERLWAWESWRSEVGKQLRPLYEEYVVLKNEMARANHYEDYGD 201 (615)
T ss_dssp HHHHHHHCEEEETTEEEEE-EETTTBHHHHHHHCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHhcCeeccCCCcccc-cccchhHHHHHHhCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 5678999999986555569 899999999999999999999999999999998899999999999999999999999999
Q ss_pred HHhhhcCCch----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccccccc----cccc
Q psy3035 81 YWLDAYDTPD----------FRDQVAKLWDQIRPLYLQIHAYTRRRLNEKYGDKVVNRRGPIPAHLLGSCRQ----TTLE 146 (161)
Q Consensus 81 ~Wr~~Ye~~~----------~~~~~e~lw~qi~PLY~qLHayVR~~L~~~YG~~~v~~~gpIPAHLLGnmWa----ni~~ 146 (161)
+|++.||+.. +.+.+++||++|+|+|.+||+|||++|++.|| +.|...||||+|||||||+ ++++
T Consensus 202 ~~~~~ye~~~~~r~dy~~~~~~~~ld~l~~~l~p~~~~L~~yvr~kl~~~yg-~~i~~~~~~p~~llg~m~~~~w~~~~~ 280 (615)
T 1r42_A 202 YWRGDYEVNGVDGYDYSRGQLIEDVEHTFEEIKPLYEHLHAYVRAKLMNAYP-SYISPIGCLPAHLLGDMWGRFWTNLYS 280 (615)
T ss_dssp HHHTTTCBCSCTTTCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST-TTSCTTBCEEGGGSSSSSCSCCGGGHH
T ss_pred HHHHhhccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cccccCCCccHHHhhhhhhccchhhhc
Confidence 9999998866 99999999999999999999999999999999 8899999999999999999 6678
Q ss_pred ccccCCCCCCC
Q psy3035 147 AEKPTKGAAPE 157 (161)
Q Consensus 147 ~~~P~p~~~~~ 157 (161)
+..|||+++.+
T Consensus 281 l~~~~~~~~~~ 291 (615)
T 1r42_A 281 LTVPFGQKPNI 291 (615)
T ss_dssp HHCTTTTSCCC
T ss_pred cccCCCCCCcc
Confidence 88999988765
No 5
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB: 3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Probab=98.76 E-value=6.6e-08 Score=86.72 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=83.1
Q ss_pred CCCchHHHHHHhhCCCHHHHHHHHHHHHHhh---chhHHHhHHHHHHhHHHHHHHcCCcChHHHHh-----hhcCCchHH
Q psy3035 21 LTLEPELTEIFIGSRDPEELRHYWTEFRKKS---GKQVRNHYKQYVDLENEVAVKNNFTDAAEYWL-----DAYDTPDFR 92 (161)
Q Consensus 21 l~lepdl~~Ima~Srd~~eL~~~W~~Wr~~v---g~~~r~~y~~~V~L~N~aA~~nGf~d~g~~Wr-----~~Ye~~~~~ 92 (161)
+++ |.+..+|.. +|.+.++.+|++|++.. |..+.+.|.++|.+.|+.|++.||+|..+++. +.|+.+++.
T Consensus 157 l~~-~~~~~~l~~-~dr~~R~~a~~a~~~~~~~~~~~~~~~l~~~v~~r~~~A~l~Gy~s~~~~~l~~m~~~~~~~e~v~ 234 (564)
T 3ahn_A 157 RTL-AQLQPFVES-PDRDMRKRASEARFTFFQEHEEKFDEIYDQLVKVRTAIAQKLGFKNFVELGYARLGRTDYNAEMVA 234 (564)
T ss_dssp ECT-GGGHHHHTC-SSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHTTCCSCCHHHHH
T ss_pred ccH-HHHHHHhcC-CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhhccCCCHHHHH
Confidence 665 899999975 99999999999999876 34688999999999999999999999999996 455567899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy3035 93 DQVAKLWDQIRPLYLQIHAYTRRRLNEKYGDK 124 (161)
Q Consensus 93 ~~~e~lw~qi~PLY~qLHayVR~~L~~~YG~~ 124 (161)
+.++.|++.++|++++ |++.+ ++.+|.+
T Consensus 235 ~~l~~l~~~~~p~~~~---~~~~k-~~~~g~~ 262 (564)
T 3ahn_A 235 KFRKQVEKHIVPIAVK---LRERQ-RERIGVE 262 (564)
T ss_dssp HHHHHHHHHTHHHHHH---HHHHH-HHHHTCS
T ss_pred HHHHHHHHHhHHHHHH---HHHHH-HHHcCCC
Confidence 9999999999999988 55544 4456743
No 6
>3ce2_A Putative peptidase; structural genomics, unknown function, P protein structure initiative; 2.60A {Chlamydophila abortus}
Probab=98.13 E-value=2.4e-05 Score=71.27 Aligned_cols=99 Identities=12% Similarity=0.008 Sum_probs=81.0
Q ss_pred CCCchHHHHHHhhCCCHHHHHHHHHHHHHhhch---hHHHhHHHHHHhHHHHHHHcCCcChHHHHhhhcCCchHHHHHHH
Q psy3035 21 LTLEPELTEIFIGSRDPEELRHYWTEFRKKSGK---QVRNHYKQYVDLENEVAVKNNFTDAAEYWLDAYDTPDFRDQVAK 97 (161)
Q Consensus 21 l~lepdl~~Ima~Srd~~eL~~~W~~Wr~~vg~---~~r~~y~~~V~L~N~aA~~nGf~d~g~~Wr~~Ye~~~~~~~~e~ 97 (161)
++. |.+..+|. |.|.+.++.+|.+|.+..+. ...+.+.+.|.+.++.|+..||++..++-...-++ -.+.++.
T Consensus 208 l~~-~~~~~~l~-~~dr~~Rk~a~~a~~~~~~~~~~~~~~~l~~lv~lr~~~A~llGy~s~~~~~l~~~~~--~~~~v~~ 283 (618)
T 3ce2_A 208 LSH-ALASLYMQ-STDRELRKTSYLAQCERYHSYRHTFANLLNGKIQAHVFYAKNKRYNSCLQAALYHNNI--PTTVYTN 283 (618)
T ss_dssp CCH-HHHHHHHT-CSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHTTTTC--CHHHHHH
T ss_pred cCH-HHHHHHHh-CcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCC--CHHHHHH
Confidence 444 78889997 99999999999999987653 57888999999999999999999999987764332 3577889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy3035 98 LWDQIRPLYLQIHAYTRRRLNEKYGDK 124 (161)
Q Consensus 98 lw~qi~PLY~qLHayVR~~L~~~YG~~ 124 (161)
++++|++-+..+|.|++.+-. ..|.+
T Consensus 284 l~~~v~~~~p~~~~~~~~k~~-~~g~~ 309 (618)
T 3ce2_A 284 LIDIVKKNSSLITKYFSIKQR-CLNLK 309 (618)
T ss_dssp HHHHHHTTHHHHHHHHHHHHH-HHTCS
T ss_pred HHHHHHHhhHHHHHHHHHHHH-hcCCC
Confidence 999999888889999887744 35643
No 7
>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2, protein ST initiative; 2.50A {Enterococcus faecium}
Probab=98.10 E-value=3.9e-05 Score=69.30 Aligned_cols=99 Identities=14% Similarity=0.051 Sum_probs=79.6
Q ss_pred CCCchHHHHHHhhCCCHHHHHHHHHHHHHhhch---hHHHhHHHHHHhHHHHHHHcCCcChHHHHhhhcCCchHHHHHHH
Q psy3035 21 LTLEPELTEIFIGSRDPEELRHYWTEFRKKSGK---QVRNHYKQYVDLENEVAVKNNFTDAAEYWLDAYDTPDFRDQVAK 97 (161)
Q Consensus 21 l~lepdl~~Ima~Srd~~eL~~~W~~Wr~~vg~---~~r~~y~~~V~L~N~aA~~nGf~d~g~~Wr~~Ye~~~~~~~~e~ 97 (161)
++. |.+..+|. |+|.+.++.+|++|.+..+. ...+.+.+.|.+.++.|+..||++..++....-. --.+.++.
T Consensus 176 l~~-~~~~~~l~-~~dr~~R~~a~~a~~~~~~~~~~~~~~~l~~lv~lr~~~A~llGy~s~~~~~l~~~~--~~~~~v~~ 251 (587)
T 2qr4_A 176 LSH-GVYGQLLE-STDRRVREAAFKGLYSVYEQFRNTFASTLGTHIKGHNFKAKVRNYSSAREASLSNNH--IPESVYDT 251 (587)
T ss_dssp CCH-HHHHHHHT-CSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHTTT--CCHHHHHH
T ss_pred cCH-HHHHHHHh-CcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcC--CCHHHHHH
Confidence 444 78889997 99999999999999987653 5888899999999999999999999998775322 23577888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy3035 98 LWDQIRPLYLQIHAYTRRRLNEKYGDK 124 (161)
Q Consensus 98 lw~qi~PLY~qLHayVR~~L~~~YG~~ 124 (161)
++++|++-+-.+|.|++.+- +..|.+
T Consensus 252 l~~~l~~~~p~~~~~~~~~~-~~~g~~ 277 (587)
T 2qr4_A 252 LVDVVNKHLPLLHRYMELRK-RLLEVE 277 (587)
T ss_dssp HHHHHHHTHHHHHHHHHHHH-HHHTCS
T ss_pred HHHHHHHhhHHHHHHHHHHH-HHcCCC
Confidence 88888888888888888753 345643
No 8
>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel, hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P
Probab=97.74 E-value=0.00025 Score=65.33 Aligned_cols=91 Identities=18% Similarity=0.267 Sum_probs=78.7
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHHHHhhchhHHHhHHHHHHhHHHHHHHcCCcChHHHHhhhcCCc----hHHHHHHHHHH
Q psy3035 25 PELTEIFIGSRDPEELRHYWTEFRKKSGKQVRNHYKQYVDLENEVAVKNNFTDAAEYWLDAYDTP----DFRDQVAKLWD 100 (161)
Q Consensus 25 pdl~~Ima~Srd~~eL~~~W~~Wr~~vg~~~r~~y~~~V~L~N~aA~~nGf~d~g~~Wr~~Ye~~----~~~~~~e~lw~ 100 (161)
|.+..+|..+.|.+.++.+|+++.........+.+.+.|.+-++.|++.||++..++=... .|. +..+.+++|++
T Consensus 223 ~~~~~~l~~~~dr~~Rk~a~~a~~~~~~~~n~~~l~~i~~lR~~~A~llGy~s~a~~~l~~-~ma~~pe~V~~fl~~L~~ 301 (678)
T 2o3e_A 223 PHYFPVMKKCCVPETRRKMEMAFHTRCKQENTAILQQLLPLRAQVAKLLGYNTHADFVLEL-NTAKSTSRVAAFLDDLSQ 301 (678)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHTT-STTCSHHHHHHHHHHHHH
T ss_pred ccHHHHHhcCCCHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHh-hhcCCHHHHHHHHHHHHH
Confidence 7888999999999999999999996543346688999999999999999999999986544 243 56688999999
Q ss_pred HHHHH----HHHHHHHHHHH
Q psy3035 101 QIRPL----YLQIHAYTRRR 116 (161)
Q Consensus 101 qi~PL----Y~qLHayVR~~ 116 (161)
.++|. +..||+|.+.+
T Consensus 302 ~~~~~a~~e~~~L~~~~~~~ 321 (678)
T 2o3e_A 302 KLKPLGEAEREFILSLKKKE 321 (678)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999 99999999875
No 9
>3sks_A Putative oligoendopeptidase F; structural genomics, center for structural genomics of infec diseases, csgid, protease, hydrolase; 2.05A {Bacillus anthracis}
Probab=97.35 E-value=0.0012 Score=59.76 Aligned_cols=88 Identities=15% Similarity=0.234 Sum_probs=72.4
Q ss_pred CCCchHHHHHHhhCCCHHHHHHHHHHHHHhhch---hHHHhHHHHHHhHHHHHHHcCCcChHHHHhh-----hcCCchHH
Q psy3035 21 LTLEPELTEIFIGSRDPEELRHYWTEFRKKSGK---QVRNHYKQYVDLENEVAVKNNFTDAAEYWLD-----AYDTPDFR 92 (161)
Q Consensus 21 l~lepdl~~Ima~Srd~~eL~~~W~~Wr~~vg~---~~r~~y~~~V~L~N~aA~~nGf~d~g~~Wr~-----~Ye~~~~~ 92 (161)
+.|. .+..+|. |.|.+.++.+|++|.+.... ...+.+.+.|.+.++.|+..||++..++-.+ .++.+...
T Consensus 160 ~tl~-~~~~~l~-~~dr~~R~~a~~a~~~~~~~~~~~~~~~l~~lv~~r~~~A~llGy~s~~~~~l~rm~~~~~~~e~v~ 237 (567)
T 3sks_A 160 RTLS-QLIPFMQ-GKERSERKAASEAYYGFLAENEEELDRIYDELVKVRTKIAKSLGFKNFVELGYARMYRTDYNAEMVA 237 (567)
T ss_dssp ECHH-HHHHHHT-SSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHTTCCSCCHHHHH
T ss_pred Eehh-hhhhhhc-CCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCHHHHH
Confidence 6675 6888888 99999999999999865432 3678999999999999999999999998642 33445777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3035 93 DQVAKLWDQIRPLYLQIH 110 (161)
Q Consensus 93 ~~~e~lw~qi~PLY~qLH 110 (161)
+.++.|++.+.|+.+++.
T Consensus 238 ~~l~~l~~~~~p~~~~~~ 255 (567)
T 3sks_A 238 NYRQQVLDYIVPVTTELR 255 (567)
T ss_dssp HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 889999999999987743
No 10
>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P
Probab=97.14 E-value=0.0046 Score=56.94 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=74.0
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHHHHhhchhHHHhHHHHHHhHHHHHHHcCCcChHHHHhhhcCC----chHHHHHHHHHH
Q psy3035 25 PELTEIFIGSRDPEELRHYWTEFRKKSGKQVRNHYKQYVDLENEVAVKNNFTDAAEYWLDAYDT----PDFRDQVAKLWD 100 (161)
Q Consensus 25 pdl~~Ima~Srd~~eL~~~W~~Wr~~vg~~~r~~y~~~V~L~N~aA~~nGf~d~g~~Wr~~Ye~----~~~~~~~e~lw~ 100 (161)
|.+..+|..+.|.+.++.+|+++.........+.+.+.|.+-++.|++.||++..++=... .+ ++..+.+++++.
T Consensus 207 ~~~~~~l~~~~dr~~Rk~~~~a~~~~~~~~n~~~l~~i~~lR~~~A~llGy~s~a~~~l~~-~ma~tp~~V~~fL~~l~~ 285 (674)
T 2o36_A 207 PHYFPLLKKCHVPETRRKVEEAFNSRCKEENSAILKELVTLRAQKSRLLGFHTHADYVLEM-NMAKTSQTVATFLDELAQ 285 (674)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHTT-STTCSHHHHHHHHHHHHH
T ss_pred ccHHHHHhhCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH-hhcCCHHHHHHHHHHHHH
Confidence 7899999999999999999999986543346888999999999999999999999986655 33 366777899999
Q ss_pred HHHHHHHH----HHHHHHHHH
Q psy3035 101 QIRPLYLQ----IHAYTRRRL 117 (161)
Q Consensus 101 qi~PLY~q----LHayVR~~L 117 (161)
.++|+-++ |.++.+..+
T Consensus 286 ~~~p~~~~e~~~L~~~~~~~~ 306 (674)
T 2o36_A 286 KLKPLGEQERAVILELKRAEC 306 (674)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 99996544 555554433
No 11
>1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase, neurolysin, ACE, hydrolase; HET: TRP; 2.00A {Escherichia coli}
Probab=96.92 E-value=0.0055 Score=56.63 Aligned_cols=84 Identities=10% Similarity=0.076 Sum_probs=70.1
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHHHHhhc----hhHHHhHHHHHHhHHHHHHHcCCcChHHHHhhhcCCc----hHHHHHH
Q psy3035 25 PELTEIFIGSRDPEELRHYWTEFRKKSG----KQVRNHYKQYVDLENEVAVKNNFTDAAEYWLDAYDTP----DFRDQVA 96 (161)
Q Consensus 25 pdl~~Ima~Srd~~eL~~~W~~Wr~~vg----~~~r~~y~~~V~L~N~aA~~nGf~d~g~~Wr~~Ye~~----~~~~~~e 96 (161)
|.+..+|..+.|.+.++.+|.++..... ....+.+.+.|.+-++.|++.||++..++=.+. .|. +..+.++
T Consensus 223 ~~~~~~l~~~~dr~~Rk~~~~a~~~~~~~~~~~~n~~~l~~i~~lR~~~A~llGy~s~a~~~l~~-~ma~t~e~V~~fL~ 301 (680)
T 1y79_1 223 TTQQPALAEMRDRATREKLFIAGWTRAEKNDANDTRAIIQRLVEIRAQQATLLGFPHYAAWKIAD-QMAKTPEAALNFMR 301 (680)
T ss_dssp SSSCGGGGTCCCHHHHHHHHHHHHTTTCSSSTTCCHHHHHHHHHHHHHHHHHTTCSSHHHHHHTT-STTCSHHHHHHHHH
T ss_pred hhHHHHHhhCcCHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHh-hhcCCHHHHHHHHH
Confidence 6788899999999999999999997653 368899999999999999999999999975532 233 5667788
Q ss_pred HHHHHHHHHHHHH
Q psy3035 97 KLWDQIRPLYLQI 109 (161)
Q Consensus 97 ~lw~qi~PLY~qL 109 (161)
+|++.++|+-++-
T Consensus 302 ~l~~~~~p~a~~e 314 (680)
T 1y79_1 302 EIVPAARQRASDE 314 (680)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877554
No 12
>1ka2_A M32 carboxypeptidase; hexxh motif, M32 family, metallopeptidase; 2.20A {Pyrococcus furiosus} SCOP: d.92.1.5 PDB: 1k9x_A 1ka4_A
Probab=86.71 E-value=3.1 Score=37.50 Aligned_cols=78 Identities=13% Similarity=0.198 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhhc-hhHHHhHHHHHHhHHHHHHHcCCcC-hHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3035 38 EELRHYWTEFRKKSG-KQVRNHYKQYVDLENEVAVKNNFTD-AAEYWLDAYDTPDFRDQVAKLWDQIRPLYLQIHAYTRR 115 (161)
Q Consensus 38 ~eL~~~W~~Wr~~vg-~~~r~~y~~~V~L~N~aA~~nGf~d-~g~~Wr~~Ye~~~~~~~~e~lw~qi~PLY~qLHayVR~ 115 (161)
.+-..+|..=|.+.. ...+|..++.|+|.++.|...|+.. .=+.....||..--.+.++.++.+|++-...|...|..
T Consensus 113 s~~~~~W~~ar~~~Df~~f~p~L~~vv~l~re~A~~~~~~~~~YDaLLd~yEpg~t~~~ld~iF~~Lk~~l~~li~~i~~ 192 (499)
T 1ka2_A 113 SLATKAWEEAKAKDDFSKFEPWLDKIISLAKRAAEYLGYEEEPYDALLDLYEEGLRTRDVEKMFEVLEKKLKPLLDKILE 192 (499)
T ss_dssp HHHHHHHHHHHHTTCGGGTHHHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHhHHHHHHHHHc
Confidence 445567777776654 4488999999999999999988876 35668888986555688999999999988888777654
No 13
>3hq2_A Bacillus subtilis M32 carboxypeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc; 2.90A {Bacillus subtilis} SCOP: d.92.1.0
Probab=84.73 E-value=4.6 Score=36.47 Aligned_cols=71 Identities=11% Similarity=0.236 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhc-hhHHHhHHHHHHhHHHHHHHcCCc-ChHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHH
Q psy3035 40 LRHYWTEFRKKSG-KQVRNHYKQYVDLENEVAVKNNFT-DAAEYWLDAYDTPDFRDQVAKLWDQIRPLYLQIH 110 (161)
Q Consensus 40 L~~~W~~Wr~~vg-~~~r~~y~~~V~L~N~aA~~nGf~-d~g~~Wr~~Ye~~~~~~~~e~lw~qi~PLY~qLH 110 (161)
=..+|..=|.+.. ...+|..++.|+|..+.|...|+. +.-+.+...||..--.+.++++|.+||+....|-
T Consensus 113 ~~~~W~~Ar~~nDf~~F~P~L~~vv~l~re~A~~~~~~~~pYDaLLd~yEpg~t~~~ld~iF~~Lk~~l~~Li 185 (501)
T 3hq2_A 113 AETAWEEAKGKSDFSLFSPYLEQLIEFNKRFITYWGYQEHPYDALLDLFEPGVTVKVLDQLFAELKEAIIPLV 185 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCCSSCTTHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3456666665443 347888999999999999998873 4457788999876667889999999998876663
No 14
>3fy6_A Integron cassette protein; novel, oyster POND, woodshole,USA, unknown function, structural genomics, PSI-2, protein structure initiative; 2.10A {Vibrio cholerae}
Probab=83.40 E-value=1.9 Score=31.78 Aligned_cols=57 Identities=19% Similarity=0.384 Sum_probs=35.1
Q ss_pred hHHHHHHhhCCC------HHHHHHHHHHHHHhhchh---HHHhHHHHHHhHHHHHHHcCCcChHHHHhhh
Q psy3035 25 PELTEIFIGSRD------PEELRHYWTEFRKKSGKQ---VRNHYKQYVDLENEVAVKNNFTDAAEYWLDA 85 (161)
Q Consensus 25 pdl~~Ima~Srd------~~eL~~~W~~Wr~~vg~~---~r~~y~~~V~L~N~aA~~nGf~d~g~~Wr~~ 85 (161)
.-|++||.+..= -+-+.|+|..||+ .|-. +...-+-..+-.|+.-.. +-.+++||.-
T Consensus 60 ~~L~~IM~ND~iYPP~i~~~~~~~AW~EWR~-~~L~~Dei~~E~~~~~~WVN~iT~s---KP~S~FW~K~ 125 (126)
T 3fy6_A 60 ETLQDIMNNDSVYPPEITQNLFQHAWLEWRK-GALDNDEVTRELELVAQWVNKVTEA---KPNSDFWRKY 125 (126)
T ss_dssp SCHHHHHHTTTCCCBTTHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHHHHT---SCCSHHHHHH
T ss_pred chHHHHhhCCCcCChHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHhhc---CCcHHHHHhc
Confidence 469999998653 4789999999995 3322 233333334455655433 3345778754
No 15
>3dwc_A TCMCP-1, metallocarboxypeptidase; cowrin family of metallocarboxypept carboxypeptidase, hydrolase; 2.10A {Trypanosoma cruzi}
Probab=82.87 E-value=9.7 Score=34.40 Aligned_cols=93 Identities=16% Similarity=0.312 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhc-hhHHHhHHHHHHhHHHHHHHcCCc---ChHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3035 41 RHYWTEFRKKSG-KQVRNHYKQYVDLENEVAVKNNFT---DAAEYWLDAYDTPDFRDQVAKLWDQIRPLYLQIHAYTRRR 116 (161)
Q Consensus 41 ~~~W~~Wr~~vg-~~~r~~y~~~V~L~N~aA~~nGf~---d~g~~Wr~~Ye~~~~~~~~e~lw~qi~PLY~qLHayVR~~ 116 (161)
..+|..=|.+.. ...+|..++.|+|..+.|...|+. +.-+.+...||..--.+.+++++.+||+....|-.=|..+
T Consensus 113 ~~~W~~Ar~~nDf~~F~P~L~~vv~l~re~A~~~~~~~~~~pYDaLLd~yEpg~t~~~ld~iF~~lk~~L~~Ll~~i~~~ 192 (505)
T 3dwc_A 113 HQVWKTCREKNDFAGFLPTLKELIALFREEGKLRAGNSGKHPYEALVDIYEPGMTLQRLDEIFGNVRSWLPELLKEVQEK 192 (505)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCcccCCCcHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666665433 337888889999999999998874 6667799999876667889999999999887775555443
Q ss_pred HHHHhCCCCCCCCCCCcc
Q psy3035 117 LNEKYGDKVVNRRGPIPA 134 (161)
Q Consensus 117 L~~~YG~~~v~~~gpIPA 134 (161)
-... +++.....|++|.
T Consensus 193 ~~~~-~~~~~~~~~~~~~ 209 (505)
T 3dwc_A 193 QKAL-GETVLEPKGPFPV 209 (505)
T ss_dssp HHHH-TCCCCCCCCCCCH
T ss_pred cccC-CCCccccCCCCCH
Confidence 2210 2332233567665
No 16
>3hoa_A Thermostable carboxypeptidase 1; proline-rich loop, hydrolase; 2.10A {Thermus thermophilus HB27} SCOP: d.92.1.0 PDB: 1wgz_A
Probab=76.53 E-value=5.1 Score=36.20 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=52.1
Q ss_pred HHHHHHHHhhc-hhHHHhHHHHHHhHHHHHHHcCCc----------ChHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHH
Q psy3035 42 HYWTEFRKKSG-KQVRNHYKQYVDLENEVAVKNNFT----------DAAEYWLDAYDTPDFRDQVAKLWDQIRPLYLQIH 110 (161)
Q Consensus 42 ~~W~~Wr~~vg-~~~r~~y~~~V~L~N~aA~~nGf~----------d~g~~Wr~~Ye~~~~~~~~e~lw~qi~PLY~qLH 110 (161)
.+|..=|.+.. ...+|.+++.|+|..+.|...|+. +.-+.+...||..--.+.++++|.+||+....|-
T Consensus 117 ~~W~~Ar~~~Df~~F~P~L~~vv~l~re~A~~~~~~~~~~~~~~~~~~YDaLLd~yEpg~t~~~ld~iF~~Lk~~l~~Ll 196 (509)
T 3hoa_A 117 SFWEEARPRDDWRGFLPYLKRVYALTKEKAEVLFALPPAPGDPPYGELYDALLDGYEPGMRARELLPLFAELKEGLKGLL 196 (509)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTSCCCCSHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCcccccccccCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34444443222 237788899999999999998872 4457799999876677889999999998887763
Q ss_pred H
Q psy3035 111 A 111 (161)
Q Consensus 111 a 111 (161)
.
T Consensus 197 ~ 197 (509)
T 3hoa_A 197 D 197 (509)
T ss_dssp H
T ss_pred H
Confidence 3
No 17
>2a8e_A Hypothetical protein YKTB; X-RAY, NESG, Q45498, structural genomics, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: d.296.1.1
Probab=44.84 E-value=15 Score=29.90 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHH
Q psy3035 87 DTPDFRDQVAKLWDQIRPLYLQI 109 (161)
Q Consensus 87 e~~~~~~~~e~lw~qi~PLY~qL 109 (161)
+.+.|.+.++..++++.|||+.+
T Consensus 184 ~~~~~~~~i~~tf~~LlPlY~~~ 206 (220)
T 2a8e_A 184 NNQEFLQRIDDAFKQLAFLYRLT 206 (220)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
No 18
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=43.19 E-value=5.6 Score=29.08 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhCCCCC
Q psy3035 110 HAYTRRRLNEKYGDKVV 126 (161)
Q Consensus 110 HayVR~~L~~~YG~~~v 126 (161)
-+++|.+|+++||++.|
T Consensus 73 D~~~R~qL~~KfG~enV 89 (111)
T 3k6g_A 73 DEDTREALVKKFGAQNV 89 (111)
T ss_dssp CHHHHHHHHHHHCHHHH
T ss_pred CHHHHHHHHHHHhhHHH
Confidence 36899999999997655
No 19
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=42.43 E-value=24 Score=25.04 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=39.7
Q ss_pred hHHHHHHhHHHHH-HHc-CCcChHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3035 58 HYKQYVDLENEVA-VKN-NFTDAAEYWLDAYDTPDFRDQVAKLWDQIRPLYLQIHAYTRRRLNE 119 (161)
Q Consensus 58 ~y~~~V~L~N~aA-~~n-Gf~d~g~~Wr~~Ye~~~~~~~~e~lw~qi~PLY~qLHayVR~~L~~ 119 (161)
.-.+|.+..+... +++ -|.+.+ .|+..= -..|.+..+++-+.++.+...-=.||+. |++
T Consensus 17 ~L~~F~d~Lq~~~~~L~~~f~~L~-sWqDqk-r~kFee~fe~l~s~l~~f~e~a~e~vp~-L~~ 77 (94)
T 3fx7_A 17 HLERFKELLREEVNSLSNHFHNLE-SWRDAR-RDKFSEVLDNLKSTFNEFDEAAQEQIAW-LKE 77 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-SCCSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-hHhhHH-HHHHHHHHHHHHHHHHHHHHhhHHHhHH-HHH
Confidence 3456665555444 333 367776 687321 1479999999999999999988887775 443
No 20
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}
Probab=41.46 E-value=30 Score=24.83 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy3035 97 KLWDQIRPLYLQIHAYTRRRLNEKYGD 123 (161)
Q Consensus 97 ~lw~qi~PLY~qLHayVR~~L~~~YG~ 123 (161)
..+.|++-+.+++++-.|+.|.+.||+
T Consensus 133 ~f~~qL~~~e~~~~~~~~~~l~~~y~~ 159 (160)
T 1yz4_A 133 GFRQQLEEFGWASSQKLRRQLEERFGE 159 (160)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhcC
Confidence 467788888889999999999999984
No 21
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=40.73 E-value=38 Score=19.49 Aligned_cols=27 Identities=19% Similarity=0.521 Sum_probs=21.5
Q ss_pred CCchHHHHHHHHHH-----HHHHHHHHHHHHH
Q psy3035 87 DTPDFRDQVAKLWD-----QIRPLYLQIHAYT 113 (161)
Q Consensus 87 e~~~~~~~~e~lw~-----qi~PLY~qLHayV 113 (161)
|.+.++..+.+||. +|..|.++.|..+
T Consensus 2 eveelekkfkelwkgprrgeieelhkkfheli 33 (35)
T 1qp6_A 2 EVEELEKKFKELWKGPRRGEIEELHKKFHELI 33 (35)
T ss_dssp CSHHHHHHHHHHHSSSCSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCccchHHHHHHHHHHHh
Confidence 34678888999996 8999998888754
No 22
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=38.77 E-value=84 Score=23.70 Aligned_cols=90 Identities=11% Similarity=0.187 Sum_probs=56.2
Q ss_pred CCCchHHHHHHhhCCCHHHHHHHHHHHHHhhchhHHHhHHHHHHhHHHHHHH-cCCcChHHHHhhh-cCCchHHHHHHHH
Q psy3035 21 LTLEPELTEIFIGSRDPEELRHYWTEFRKKSGKQVRNHYKQYVDLENEVAVK-NNFTDAAEYWLDA-YDTPDFRDQVAKL 98 (161)
Q Consensus 21 l~lepdl~~Ima~Srd~~eL~~~W~~Wr~~vg~~~r~~y~~~V~L~N~aA~~-nGf~d~g~~Wr~~-Ye~~~~~~~~e~l 98 (161)
-.+.||...-...=++.++...+=..+.+ .|.+|-+|..+.... .-|.+......+. =.++++. .|.+-
T Consensus 28 ~~~~pDy~~~Yp~I~S~eqR~rYK~~F~~--------dy~EYk~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~-~i~~E 98 (140)
T 1xaw_A 28 DELEEDWIREYPPITSDQQRQLYKRNFDT--------GLQEYKSLQSVLDEINKELSRLDKELDDYREESEEYM-AAADE 98 (140)
T ss_dssp ------CTTTSCCCCSHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHH-HHHHH
T ss_pred CCCCCcHHHhCCCCCCHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH-HHHHH
Confidence 35666655555555777888777777664 488999988887655 6788888766652 2333443 45667
Q ss_pred HHHHH-----HHHHH---HHHHHHHHHHH
Q psy3035 99 WDQIR-----PLYLQ---IHAYTRRRLNE 119 (161)
Q Consensus 99 w~qi~-----PLY~q---LHayVR~~L~~ 119 (161)
|+.|+ |=|.+ =+.|++.||..
T Consensus 99 Y~r~k~~K~dp~y~ekK~Rc~yL~~KLsH 127 (140)
T 1xaw_A 99 YNRLKQVKGSADYKSKKNHCKQLKSKLSH 127 (140)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 77764 55643 46788888864
No 23
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=35.81 E-value=34 Score=21.51 Aligned_cols=18 Identities=44% Similarity=0.903 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhhchhH
Q psy3035 38 EELRHYWTEFRKKSGKQV 55 (161)
Q Consensus 38 ~eL~~~W~~Wr~~vg~~~ 55 (161)
-.++.-|.+||..+...+
T Consensus 18 RrlLeEW~awRa~~~~~L 35 (50)
T 3zwl_E 18 RELLKQWTEYREKIGQEM 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467888999998775444
No 24
>2lfw_B NEPR anti sigma factor; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=33.47 E-value=24 Score=23.34 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCCCCCCCCCccccc
Q psy3035 112 YTRRRLNEKYGDKVVNRRGPIPAHLL 137 (161)
Q Consensus 112 yVR~~L~~~YG~~~v~~~gpIPAHLL 137 (161)
-+-.+|++.| .+++ +.+||.+.|
T Consensus 27 ~Ig~~LR~~Y-d~vv--~E~VPDrFl 49 (62)
T 2lfw_B 27 DMGAALRSAY-QKTI--EEQVPDEML 49 (62)
T ss_dssp THHHHHHHHH-HTTT--SSCCCCTTG
T ss_pred HHHHHHHHHH-HHHh--ccCCCHHHH
Confidence 3567899999 4666 569999986
No 25
>1td6_A F10_ORF294, hypothetical protein Mg237 homolog; alpha helical, structural genomics, PSI, protein structure initiative; 2.50A {Mycoplasma pneumoniae} SCOP: a.234.1.1
Probab=30.55 E-value=1.1e+02 Score=25.68 Aligned_cols=77 Identities=14% Similarity=0.303 Sum_probs=65.2
Q ss_pred HHHHHHhhCCCHHHHHHHHHHHHHhhchhHHHhHHHHHHhHHHHHHHcCCcChHHHHhhhcCCchHHHHHHHHHHHH
Q psy3035 26 ELTEIFIGSRDPEELRHYWTEFRKKSGKQVRNHYKQYVDLENEVAVKNNFTDAAEYWLDAYDTPDFRDQVAKLWDQI 102 (161)
Q Consensus 26 dl~~Ima~Srd~~eL~~~W~~Wr~~vg~~~r~~y~~~V~L~N~aA~~nGf~d~g~~Wr~~Ye~~~~~~~~e~lw~qi 102 (161)
+|..+-.+-.||++|+.+....+..-|..+-.-|....+-.-.-.+.--|..+-+.-....+++-|-..+..-++++
T Consensus 23 hl~~lk~hf~~y~~l~~~f~~y~~~~~deLt~fy~n~l~ki~~lvk~Kdfk~Ale~~eEELdtpYlp~~lv~~Fqsl 99 (306)
T 1td6_A 23 HLSALKKHFASYKELREAFNDYHKHNGDELTTFFLHQFDKVMELVKQKDFKTAQSRCEEELAAPYLPKPLVSFFQSL 99 (306)
T ss_dssp TCSBCCCCCSSHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 44455566789999999999999999999999999998888888899999999999999999887777777766666
No 26
>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} SCOP: h.4.15.1
Probab=27.71 E-value=90 Score=17.81 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3035 89 PDFRDQVAKLWDQIRPLYLQIHAYTRRRLNEK 120 (161)
Q Consensus 89 ~~~~~~~e~lw~qi~PLY~qLHayVR~~L~~~ 120 (161)
++.++.++.|..+|.-| ..+|.+|..+
T Consensus 4 Dnie~~iedi~~ei~~l-----~~kr~~l~~q 30 (33)
T 1r48_A 4 DNIEQKIDDIDHEIADL-----QAKRTRLVQQ 30 (33)
T ss_dssp THHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred ccHHHhhhhHHHHHHHH-----HHHHHHHHHc
Confidence 46777788887777777 5777777776
No 27
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=26.93 E-value=68 Score=23.43 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhchhHHHhHHHHHHhHHHHHHHcCCcC
Q psy3035 41 RHYWTEFRKKSGKQVRNHYKQYVDLENEVAVKNNFTD 77 (161)
Q Consensus 41 ~~~W~~Wr~~vg~~~r~~y~~~V~L~N~aA~~nGf~d 77 (161)
+.-|.+|...-|-.-..-=.+||++.++.-..-++.+
T Consensus 79 raKw~AW~~l~gmS~eeAm~~YI~~v~~l~~~~~~~~ 115 (119)
T 3flv_A 79 RYKWDAWSSLGDMTKEEAMIAYVEEMKKIIETMPMTE 115 (119)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhhCCCCc
Confidence 4569999987776666667788888888777666654
No 28
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=26.46 E-value=31 Score=24.48 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcc
Q psy3035 103 RPLYLQIHAYTRRRLNEKYGDKVVNRRGPIPA 134 (161)
Q Consensus 103 ~PLY~qLHayVR~~L~~~YG~~~v~~~gpIPA 134 (161)
.|||+|+...+|..+..- .+.+...||.
T Consensus 13 ~PlY~QI~~~i~~~I~~G----~l~pG~~LPs 40 (134)
T 4ham_A 13 LPIYEQIVQKIKEQVVKG----VLQEGEKILS 40 (134)
T ss_dssp SCHHHHHHHHHHHHHHHT----SSCTTCEECC
T ss_pred CCHHHHHHHHHHHHHHcC----CCCCCCCCcc
Confidence 499999999999988652 1344455663
No 29
>1or7_C Sigma-E factor negative regulatory protein, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.180.1.1
Probab=24.83 E-value=77 Score=21.82 Aligned_cols=29 Identities=17% Similarity=0.432 Sum_probs=21.8
Q ss_pred HHHHHHhhCCCHHHHHHHHHHHHHhhchhHHHh
Q psy3035 26 ELTEIFIGSRDPEELRHYWTEFRKKSGKQVRNH 58 (161)
Q Consensus 26 dl~~Ima~Srd~~eL~~~W~~Wr~~vg~~~r~~ 58 (161)
++-+.|+ +| ++++..|..|| .+|.-||..
T Consensus 18 ell~~l~--~d-~e~~~~W~~Yh-lIgd~lR~~ 46 (90)
T 1or7_C 18 ELLNELA--HN-PEMQKTWESYH-LIRDSMRGD 46 (90)
T ss_dssp HHHHHHH--TC-HHHHHHHHHHH-HHHHHHHTC
T ss_pred HHHHHHh--cC-HHHHHHHHHHH-HHHHHHccc
Confidence 5555554 34 78999999999 688888765
No 30
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=23.45 E-value=94 Score=29.78 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=28.4
Q ss_pred HHHHhhchhHHHhHHHHHHhHHHHHHHcCCcChHHHHhhhcCCchHHHHHHHHHHHHHHH
Q psy3035 46 EFRKKSGKQVRNHYKQYVDLENEVAVKNNFTDAAEYWLDAYDTPDFRDQVAKLWDQIRPL 105 (161)
Q Consensus 46 ~Wr~~vg~~~r~~y~~~V~L~N~aA~~nGf~d~g~~Wr~~Ye~~~~~~~~e~lw~qi~PL 105 (161)
.-|++.|++.+....++-+--=++|+.||++. +..+++|++|+.|
T Consensus 707 ~lRramgkK~~~~m~~~r~~f~~g~~~~G~~~---------------~~a~~i~~~i~~F 751 (910)
T 2hnh_A 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINA---------------ELAMKIFDLVEKF 751 (910)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHTTCCH---------------HHHHHHHHHHHHH
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHH
Confidence 45667776644444444333446888899875 4466777777765
No 31
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=23.07 E-value=36 Score=18.13 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=10.5
Q ss_pred chHHHHHHHHHHHHHH
Q psy3035 89 PDFRDQVAKLWDQIRP 104 (161)
Q Consensus 89 ~~~~~~~e~lw~qi~P 104 (161)
+++..+++.+|+.|++
T Consensus 8 e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 8 EDMQRQWAGLVEKVQA 23 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4666677777776654
No 32
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=21.17 E-value=70 Score=21.90 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhchhHHHhHHHHHHhHHHHHHH
Q psy3035 41 RHYWTEFRKKSGKQVRNHYKQYVDLENEVAVK 72 (161)
Q Consensus 41 ~~~W~~Wr~~vg~~~r~~y~~~V~L~N~aA~~ 72 (161)
+.-|.+|...-|-.-..-=.+||++.++....
T Consensus 55 ~aKw~AW~~l~g~s~eeA~~~Yi~~v~~l~~k 86 (89)
T 3epy_A 55 KAKWEAWNLKKGLSTEDATSAYISKAKELIEK 86 (89)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhh
Confidence 45699999776766555667777777765543
No 33
>3fh3_A Putative ECF-type sigma factor negative effector; putative anti-sigma W factor, MCSG, PSI, structural genomics; HET: MSE; 2.10A {Bacillus anthracis str} PDB: 3fgg_A
Probab=21.16 E-value=62 Score=24.98 Aligned_cols=53 Identities=11% Similarity=0.274 Sum_probs=35.8
Q ss_pred HHHhHHHHHHhHHHHHHH---cCCcChHHHHhhhcC--CchHHHHHHHHHHHHHHHHHHHHH
Q psy3035 55 VRNHYKQYVDLENEVAVK---NNFTDAAEYWLDAYD--TPDFRDQVAKLWDQIRPLYLQIHA 111 (161)
Q Consensus 55 ~r~~y~~~V~L~N~aA~~---nGf~d~g~~Wr~~Ye--~~~~~~~~e~lw~qi~PLY~qLHa 111 (161)
.+.-|.+|++|.-+.-.. -|=+| |. -.|| ++.=++.++++..+|+|++.+|+.
T Consensus 37 tkeEFeqfi~LlKe~~~i~k~~~D~N-G~---~~~ErLs~~eqekl~~i~~eL~PyfDKL~~ 94 (158)
T 3fh3_A 37 GTKEYEVFTKELKKLTNAKLAYGDSN-GN---IDYDALSSEKREEMKKVSMGLQPYFDKLNG 94 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHBCTT-SC---BCGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCcC-CC---CChHHCCHHHHHHHHHHHHHhccHHHHHcC
Confidence 577899999887765322 22222 33 1222 124557799999999999999997
No 34
>3t0y_B NEPR; sigma factor, anti-sigma factor, receiver domain, gene regul signal transduction, transcription regulator-protein bindin; 2.10A {Caulobacter vibrioides}
Probab=21.15 E-value=14 Score=24.89 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCccccc
Q psy3035 111 AYTRRRLNEKYGDKVVNRRGPIPAHLL 137 (161)
Q Consensus 111 ayVR~~L~~~YG~~~v~~~gpIPAHLL 137 (161)
..+.++|++.| ++++ +-|||.++|
T Consensus 32 ~~IG~~LR~~Y-d~vv--~EpVPDrFl 55 (68)
T 3t0y_B 32 QAIGVKLRQMF-DEVV--NEPVPDEFL 55 (68)
T ss_dssp CHHHHHHHHHT-HHHH--HSCCCHHHH
T ss_pred HHHHHHHHHHH-HHHh--ccCCCHHHH
Confidence 45678899999 4666 458998875
No 35
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.72 E-value=1.1e+02 Score=16.52 Aligned_cols=16 Identities=13% Similarity=0.380 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3035 95 VAKLWDQIRPLYLQIH 110 (161)
Q Consensus 95 ~e~lw~qi~PLY~qLH 110 (161)
.++||.++.-|-+.|.
T Consensus 3 adelykeledlqerlr 18 (27)
T 3twe_A 3 ADELYKELEDLQERLR 18 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556666666655553
No 36
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=20.48 E-value=70 Score=22.77 Aligned_cols=36 Identities=19% Similarity=0.417 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhchhHHHhHHHHHHhHHHHHHHcCCc
Q psy3035 41 RHYWTEFRKKSGKQVRNHYKQYVDLENEVAVKNNFT 76 (161)
Q Consensus 41 ~~~W~~Wr~~vg~~~r~~y~~~V~L~N~aA~~nGf~ 76 (161)
+.-|.+|...-|-.-..-=.+||++.++.-..-|-.
T Consensus 59 raKw~AW~~l~gmS~eeA~~~YI~~v~~l~~~~~~~ 94 (106)
T 3fp5_A 59 KAKWDAWKSVEGTSKEVAYQKYVEKLLEILKKADTE 94 (106)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCSH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCcH
Confidence 456999997766665566677888888766543433
No 37
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=20.36 E-value=72 Score=28.35 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccccc
Q psy3035 97 KLWDQIRPLYLQIHAYTRRRLNEKYGDKVVNRRGPIPAHLLGSC 140 (161)
Q Consensus 97 ~lw~qi~PLY~qLHayVR~~L~~~YG~~~v~~~gpIPAHLLGnm 140 (161)
+-|++|+---.|-..-+-.-|...||+..+-++|-||+-+++|-
T Consensus 82 ~eW~~le~Gl~QR~~~Ln~~l~DiYg~q~il~~G~iP~lv~~~p 125 (474)
T 3n6x_A 82 SEWARLSDGAIQRVKALNMFLHDVYHDQEIIKAGIVPSSILANA 125 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHTTSSCGGGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhHHhcCCCHHHHccCc
Confidence 34777777777777777778899999888778899994445543
No 38
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=20.23 E-value=2.5e+02 Score=21.73 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=39.6
Q ss_pred HHhHHHHHHHcCCcChHHHHhhhcCCchHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHhCCCCCCCCCCCccc
Q psy3035 63 VDLENEVAVKNNFTDAAEYWLDAYDTPDFRDQVAKLWDQI-RPLYLQI-HAYTRRRLNEKYGDKVVNRRGPIPAH 135 (161)
Q Consensus 63 V~L~N~aA~~nGf~d~g~~Wr~~Ye~~~~~~~~e~lw~qi-~PLY~qL-HayVR~~L~~~YG~~~v~~~gpIPAH 135 (161)
-.++.-+|...|. .++.+|++| -|||++- |+|--.++....|++++..- ||..
T Consensus 17 ~sil~~vAek~~~------------------~~Eely~~i~w~L~~kyG~~ydaFk~av~~~~~vl~~l--ip~~ 71 (188)
T 1yz7_A 17 ENLLKLAAEKLGK------------------DFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGH--VPDE 71 (188)
T ss_dssp HHHHHHHHHHTTC------------------CHHHHHHHTHHHHHHHHSSHHHHHHHHHHHCGGGSBTT--BCTT
T ss_pred HHHHHHHHHHcCC------------------CHHHHHHHHHHHHHHHhCcHHHHHHHHHhcChHHHHHh--CCHH
Confidence 3455566776665 477888888 6999877 89999999998888777543 7754
No 39
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=20.15 E-value=45 Score=27.23 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=26.7
Q ss_pred HHHH-HhHHHHHH-HcCCc---ChHHHHhhhcCCchHHHHHHHHHH
Q psy3035 60 KQYV-DLENEVAV-KNNFT---DAAEYWLDAYDTPDFRDQVAKLWD 100 (161)
Q Consensus 60 ~~~V-~L~N~aA~-~nGf~---d~g~~Wr~~Ye~~~~~~~~e~lw~ 100 (161)
.+|+ +|.++.+. +|||. +.+.-|++.++.++......+||+
T Consensus 36 ~~~~~~~~~~~~~~~~gf~~~~~~a~~~~~~~~~~~~~~la~~L~~ 81 (240)
T 3l9t_A 36 KQYVARLEKDFSLIEHGFKEEEQRALTDYKSNDGEYIKKLAFLAYQ 81 (240)
T ss_dssp HHHHHHHHHHHTC-----CHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 4455 67777776 79996 445668888887777788888886
Done!