RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3038
(499 letters)
>2x96_A Angiotensin converting enzyme; hydrolase, ACE inhibitor, zinc
metallopeptidase; HET: RX3 EPE NAG BMA MAN; 1.85A
{Drosophila melanogaster} PDB: 2x8z_A* 2x90_A* 2x91_A*
2x8y_A* 2x97_A* 2xhm_A* 3zqz_A* 2x94_A* 2x92_A* 2x93_A*
2x95_A* 1j36_A* 1j37_A* 1j38_A
Length = 598
Score = 435 bits (1119), Expect = e-148
Identities = 191/420 (45%), Positives = 260/420 (61%), Gaps = 37/420 (8%)
Query: 61 YRE--TFDRRRLNEKYGDKVVNRRGPIPAHLLGNMWAQTWGNIYDIVVPYPEKTPPDVSA 118
Y++ + R RL + YGD VV+ GPIP HLLGNMWAQ W I DIV P+PEK DVSA
Sbjct: 212 YQQIHGYVRFRLRKHYGDAVVSETGPIPMHLLGNMWAQQWSEIADIVSPFPEKPLVDVSA 271
Query: 119 ELVRQGYTVHKMFRTAEEFFTSINMSAMPPEFWERSMLEKPQ-GREVVCHASAWDFHDGK 177
E+ +QGYT KMF+ ++FFTS+N++ +P +FW++S++EKP GR++VCHASAWDF+
Sbjct: 272 EMEKQGYTPLKMFQMGDDFFTSMNLTKLPQDFWDKSIIEKPTDGRDLVCHASAWDFYLTD 331
Query: 178 DFRIKMCTRVNEEDLFTIHHEMGHVEYFIQYKDQPMAFREGANPGKNTRGWTALKDGLSF 237
D RIK CTRV ++ LFT+HHE+GH++YF+QY+ QP +R GANPG F
Sbjct: 332 DVRIKQCTRVTQDQLFTVHHELGHIQYFLQYQHQPFVYRTGANPG--------------F 377
Query: 238 YESWVAEIGLAGTVGSVVMRLLAMQKFVPFPLVINRKFGIRTKINSDKTIFMVEAIFLFK 297
+E+ VG V+ ++ K + K G+ D +
Sbjct: 378 HEA----------VGDVLSLSVSTPKHL-------EKIGLLKDYVRDDEARI--NQLFLT 418
Query: 298 IDTFLINTFVNIMMDLWRWGVFKKDISHEEYNKHWWKLRHDYQGVEPPTHRSEDDFDPGA 357
++ MD +RW +F+ ++ +N +WKLR +Y G+EPP RSE DFD A
Sbjct: 419 ALDKIVFLPFAFTMDKYRWSLFRGEVDKANWNCAFWKLRDEYSGIEPPVVRSEKDFDAPA 478
Query: 358 KYHIVASVPYIRYFVSFVIQFQFHRALCEKAGEFDPNDPSKQPLHECDIYRSTEAGNLLK 417
KYHI A V Y+RY VSF+IQFQF+++ C KAG++DP++ PL CDIY S AG
Sbjct: 479 KYHISADVEYLRYLVSFIIQFQFYKSACIKAGQYDPDNVEL-PLDNCDIYGSAAAGAAFH 537
Query: 418 NMLAMGSSKPWPDAMEAITGQREMDASALLQYFEPLYKWLEEENARTGEHIGWEATDKKV 477
NML+MG+SKPWPDA+EA G+R M A+ +YFEPL WLE EN + HIGW ++K V
Sbjct: 538 NMLSMGASKPWPDALEAFNGERIMSGKAIAEYFEPLRVWLEAENIKNNVHIGWTTSNKCV 597
Score = 43.3 bits (101), Expect = 1e-04
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 2 NKSAEHAQFTKDQWKELIKYPWQTYSNQDLRRQYKMYSILGSAALPYEKFQKCLKANVQY 61
SAE A+F K+ + K+ W++Y ++DL+RQ+K + LG AALP + + + L
Sbjct: 48 EISAELAKFMKEVASDTTKFQWRSYQSEDLKRQFKALTKLGYAALPEDDYAELLDTLSAM 107
Query: 62 RETF 65
F
Sbjct: 108 ESNF 111
>1uze_A Angiotensin converting enzyme; metalloprotease, inhibitor,
enalaprilat, zinc dependant peptidase, anti-hypertensive
drug; HET: EAL; 1.82A {Homo sapiens} SCOP: d.92.1.5 PDB:
1o8a_A* 1o86_A* 1uzf_A* 2oc2_A* 2ydm_A* 2iux_A* 2iul_A*
2xy9_A* 3bkk_A* 3bkl_A* 3l3n_A*
Length = 589
Score = 418 bits (1075), Expect = e-141
Identities = 203/414 (49%), Positives = 262/414 (63%), Gaps = 41/414 (9%)
Query: 64 TFDRRRLNEKYGDKVVNRRGPIPAHLLGNMWAQTWGNIYDIVVPYPEKTPPDVSAELVRQ 123
+ RR L+ YG + +N GPIPAHLLGNMWAQTW NIYD+VVP+P D + +++Q
Sbjct: 213 AYVRRALHRHYGAQHINLEGPIPAHLLGNMWAQTWSNIYDLVVPFPSAPSMDTTEAMLKQ 272
Query: 124 GYTVHKMFRTAEEFFTSINMSAMPPEFWERSMLEKPQ-GREVVCHASAWDFHDGKDFRIK 182
G+T +MF+ A++FFTS+ + +PPEFW +SMLEKP GREVVCHASAWDF++GKDFRIK
Sbjct: 273 GWTPRRMFKEADDFFTSLGLLPVPPEFWNKSMLEKPTDGREVVCHASAWDFYNGKDFRIK 332
Query: 183 MCTRVNEEDLFTIHHEMGHVEYFIQYKDQPMAFREGANPGKNTRGWTALKDGLSFYESWV 242
CT VN EDL HHEMGH++YF+QYKD P+A REGANPG F+E+
Sbjct: 333 QCTTVNLEDLVVAHHEMGHIQYFMQYKDLPVALREGANPG--------------FHEA-- 376
Query: 243 AEIGLAGTVGSVVMRLLAMQKFVPFPLVINRKFGIRTKINSDKTIFMVEAIFLFKIDTFL 302
+G V+ ++ K + +++ + G D M A L KI
Sbjct: 377 --------IGDVLALSVSTPKHLHSLNLLSSEGG---SDEHDINFLMKMA--LDKI---- 419
Query: 303 INTFVNIMMDLWRWGVFKKDISHEEYNKHWWKLRHDYQGVEPPTHRSEDDFDPGAKYHIV 362
+ ++D WRW VF I+ E YN+ WW LR YQG+ PP R++ DFDPGAK+HI
Sbjct: 420 AFIPFSYLVDQWRWRVFDGSITKENYNQEWWSLRLKYQGLCPPVPRTQGDFDPGAKFHIP 479
Query: 363 ASVPYIRYFVSFVIQFQFHRALCEKAGEFDPNDPSKQPLHECDIYRSTEAGNLLKNMLAM 422
+SVPYIRYFVSF+IQFQFH ALC+ AG PLH+CDIY+S EAG L + +
Sbjct: 480 SSVPYIRYFVSFIIQFQFHEALCQAAGHTG-------PLHKCDIYQSKEAGQRLATAMKL 532
Query: 423 GSSKPWPDAMEAITGQREMDASALLQYFEPLYKWLEEENARTGEHIGWEATDKK 476
G S+PWP+AM+ ITGQ M ASA+L YF+PL WL EN GE +GW +
Sbjct: 533 GFSRPWPEAMQLITGQPNMSASAMLSYFKPLLDWLRTENELHGEKLGWPQYNWT 586
Score = 41.7 bits (97), Expect = 5e-04
Identities = 15/76 (19%), Positives = 29/76 (38%)
Query: 1 MNKSAEHAQFTKDQWKELIKYPWQTYSNQDLRRQYKMYSILGSAALPYEKFQKCLKANVQ 60
+ K+ + A T + K+ N ++R K L AALP ++ ++ K +
Sbjct: 46 LQKNMQIANHTLKYGTQARKFDVNQLQNTTIKRIIKKVQDLERAALPAQELEEYNKILLD 105
Query: 61 YRETFDRRRLNEKYGD 76
T+ + G
Sbjct: 106 METTYSVATVCHPNGS 121
>3nxq_A Angiotensin-converting enzyme; dicarboxy zinc metallopeptidase,
hydrolase, hydrolase-hydrol inhibitor complex; HET: RX4
NAG FUC BMA P6G PG4; 1.99A {Homo sapiens} PDB: 2xyd_A*
2c6n_A* 2c6f_A*
Length = 629
Score = 413 bits (1061), Expect = e-139
Identities = 192/424 (45%), Positives = 260/424 (61%), Gaps = 41/424 (9%)
Query: 64 TFDRRRLNEKYGDKVVNRRGPIPAHLLGNMWAQTWGNIYDIVVPYPEKTPPDVSAELVRQ 123
F RR L+ +YGD+ +N RGPIPAHLLG+MWAQ+W NIYD+VVP+P+K DV++ +++Q
Sbjct: 227 AFVRRALHRRYGDRYINLRGPIPAHLLGDMWAQSWENIYDMVVPFPDKPNLDVTSTMLQQ 286
Query: 124 GYTVHKMFRTAEEFFTSINMSAMPPEFWERSMLEKPQ-GREVVCHASAWDFHDGKDFRIK 182
G+ MFR AEEFFTS+ +S MPPEFWE SMLEKP GREVVCHASAWDF++ KDFRIK
Sbjct: 287 GWQATHMFRVAEEFFTSLELSPMPPEFWEGSMLEKPADGREVVCHASAWDFYNRKDFRIK 346
Query: 183 MCTRVNEEDLFTIHHEMGHVEYFIQYKDQPMAFREGANPGKNTRGWTALKDGLSFYESWV 242
CTRV + L T+HHEMGH++Y++QYKD P++ R GANPG F+E+
Sbjct: 347 QCTRVTMDQLSTVHHEMGHIQYYLQYKDLPVSLRRGANPG--------------FHEA-- 390
Query: 243 AEIGLAGTVGSVVMRLLAMQKFVPFPLVINRKFGIRTKINSDKTIFMVEAIFLFKIDTFL 302
+G V+ ++ + + K G+ ++ +D L +
Sbjct: 391 --------IGDVLALSVSTPEHL-------HKIGLLDRVTNDT--ESDINYLLKMALEKI 433
Query: 303 INTFVNIMMDLWRWGVFKKDISHEEYNKHWWKLRHDYQGVEPPTHRSEDDFDPGAKYHIV 362
++D WRWGVF YN WW LR YQG+ PP R+E FD GAK+H+
Sbjct: 434 AFLPFGYLVDQWRWGVFSGRTPPSRYNFDWWYLRTKYQGICPPVTRNETHFDAGAKFHVP 493
Query: 363 ASVPYIRYFVSFVIQFQFHRALCEKAGEFDPNDPSKQPLHECDIYRSTEAGNLLKNMLAM 422
PYIRYFVSFV+QFQFH ALC++AG + PLH+CDIYRST+AG L+ +L
Sbjct: 494 NVTPYIRYFVSFVLQFQFHEALCKEAGY-------EGPLHQCDIYRSTKAGAKLRKVLRA 546
Query: 423 GSSKPWPDAMEAITGQREMDASALLQYFEPLYKWLEEENARTGEHIGWEATDKKVFRSDA 482
GSS+PW + ++ + G +DA LL+YF+ + +WL+E+N + GE +GW D
Sbjct: 547 GSSRPWQEVLKDMVGLDALDAQPLLKYFQLVTQWLQEQNQQNGEVLGWPEYQWHPPLPDN 606
Query: 483 EKSR 486
Sbjct: 607 YPEG 610
Score = 39.4 bits (91), Expect = 0.003
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 1 MNKSAEHAQFTKDQW---KELIKYPWQTYSNQDLRRQYKMYSILGSAALPYEKFQKCLKA 57
+ +F + KEL + WQ +++ LRR LGSA LP K Q+
Sbjct: 55 EEAALLSQEFAEAWGQKAKELYEPIWQQFTDPQLRRIIGAVRTLGSANLPLAKRQQYNAL 114
Query: 58 NVQYRETF 65
Q +
Sbjct: 115 LSQMSRIY 122
>1r42_A Angiotensin I converting enzyme 2; zinc metallopeptidase domain, Na
open conformation, chloride ION binding site; HET: NAG;
2.20A {Homo sapiens} SCOP: d.92.1.5 PDB: 1r4l_A* 3sci_A
3scj_A 2ajf_A* 3kbh_A* 3d0g_A* 3d0h_A* 3d0i_A* 3sck_A
3scl_A
Length = 615
Score = 391 bits (1004), Expect = e-130
Identities = 143/409 (34%), Positives = 215/409 (52%), Gaps = 44/409 (10%)
Query: 64 TFDRRRLNEKYGDKVVNRRGPIPAHLLGNMWAQTWGNIYDIVVPYPEKTPPDVSAELVRQ 123
+ R +L Y + G +PAHLLG+MW + W N+Y + VP+ +K DV+ +V Q
Sbjct: 242 AYVRAKLMNAYPSYIS-PIGCLPAHLLGDMWGRFWTNLYSLTVPFGQKPNIDVTDAMVDQ 300
Query: 124 GYTVHKMFRTAEEFFTSINMSAMPPEFWERSMLEKPQ-GREVVCHASAWDFHDGKDFRIK 182
+ ++F+ AE+FF S+ + M FWE SML P ++ VCH +AWD G DFRI
Sbjct: 301 AWDAQRIFKEAEKFFVSVGLPNMTQGFWENSMLTDPGNVQKAVCHPTAWDLGKG-DFRIL 359
Query: 183 MCTRVNEEDLFTIHHEMGHVEYFIQYKDQPMAFREGANPGKNTRGWTALKDGLSFYESWV 242
MCT+V +D T HHEMGH++Y + Y QP R GAN G F+E+
Sbjct: 360 MCTKVTMDDFLTAHHEMGHIQYDMAYAAQPFLLRNGANEG--------------FHEA-- 403
Query: 243 AEIGLAGTVGSVVMRLLAMQKFVPFPLVINRKFGIRTKINSDKTIFMVEAIFLFKIDTFL 302
VG ++ A K + +++ F + ++ + +A L + L
Sbjct: 404 --------VGEIMSLSAATPKHLKSIGLLSPDF--QEDNETEINFLLKQA--LTIV-GTL 450
Query: 303 INTFVNIMMDLWRWGVFKKDISHEEYNKHWWKLRHDYQGVEPPTHRSEDDFDPGAKYHIV 362
T+ M++ WRW VFK +I +++ K WW+++ + GV P E DP + +H+
Sbjct: 451 PFTY---MLEKWRWMVFKGEIPKDQWMKKWWEMKREIVGVVEPVPHDETYCDPASLFHVS 507
Query: 363 ASVPYIRYFVSFVIQFQFHRALCEKAGEFDPNDPSKQPLHECDIYRSTEAGNLLKNMLAM 422
+IRY+ + QFQF ALC+ A + PLH+CDI STEAG L NML +
Sbjct: 508 NDYSFIRYYTRTLYQFQFQEALCQAAKH-------EGPLHKCDISNSTEAGQKLFNMLRL 560
Query: 423 GSSKPWPDAMEAITGQREMDASALLQYFEPLYKWLEEENARTGEHIGWE 471
G S+PW A+E + G + M+ LL YFEPL+ WL+++N +GW
Sbjct: 561 GKSEPWTLALENVVGAKNMNVRPLLNYFEPLFTWLKDQN--KNSFVGWS 607
Score = 45.3 bits (106), Expect = 4e-05
Identities = 15/91 (16%), Positives = 31/91 (34%)
Query: 2 NKSAEHAQFTKDQWKELIKYPWQTYSNQDLRRQYKMYSILGSAALPYEKFQKCLKANVQY 61
N + + F K+Q YP Q N ++ Q + GS+ L +K ++
Sbjct: 64 NAGDKWSAFLKEQSTLAQMYPLQEIQNLTVKLQLQALQQNGSSVLSEDKSKRLNTILNTM 123
Query: 62 RETFDRRRLNEKYGDKVVNRRGPIPAHLLGN 92
+ ++ + P ++ N
Sbjct: 124 STIYSTGKVCNPDNPQECLLLEPGLNEIMAN 154
>1ka2_A M32 carboxypeptidase; hexxh motif, M32 family, metallopeptidase;
2.20A {Pyrococcus furiosus} SCOP: d.92.1.5 PDB: 1k9x_A
1ka4_A
Length = 499
Score = 77.6 bits (190), Expect = 2e-15
Identities = 44/374 (11%), Positives = 106/374 (28%), Gaps = 50/374 (13%)
Query: 87 AHLLGNMWAQTWGNIYDIVVPYPEKTPPDVSAELVRQGYTVHKMFRTAEEFFTSINMSAM 146
+ M+ + ++ E+ L ++ Y M R
Sbjct: 169 TRDVEKMFEVLEKKLKPLLDKILEEGKVPREHPLEKEKYEREWMERVNLWILQKFGFP-- 226
Query: 147 PPEFWERSMLEKPQGREVVCHASAWDFHDGKDFRIKMCTRVNE--EDLFTIHHEMGHVEY 204
R R V +D RI + + + HE GH Y
Sbjct: 227 ---LGTR-------ARLDVSAHPFTTEFGIRDVRITTRYEGYDFRRTILSTVHEFGHALY 276
Query: 205 F----IQYKDQPMAFREGANPGKNTRGWTALKDGLSFYESWVAEIGLAGTVGSVVMRLLA 260
++ P+ + G+ +S E + + V +
Sbjct: 277 ELQQDERFMFTPI--------------AGGVSLGIHESQSRFWENIIGRSKEFVELIYPV 322
Query: 261 MQKFVPFPLVINRKFGIRTKINSDKTIFMVEAIFLFKIDTFLINTFVNIMMDLWRWGVFK 320
+++ +PF + EA D N + + +
Sbjct: 323 LKENLPFMSNYTPEDVYLYFNIVRPDFIRTEA------DVVTYNFHILLRFK-LERLMVS 375
Query: 321 KDISHEEYNKHWWKLRHDYQGVEPPTHRSEDDFDPGAKYHIVASVPYIRYFVSFVIQFQF 380
++I ++ + W G+ P + + + + + Y + ++ Q
Sbjct: 376 EEIKAKDLPEMWNDEMERLLGIRPRKYS--EGILQDIHWAHGSIGYFPTYTIGTLLSAQL 433
Query: 381 HRALCEKAGEFDPNDPSKQPLHECDIYRSTEAGNLLKNMLAMGSSKPWPDAMEAITGQRE 440
+ + + +F+ + + + L + + GS P + ++ G+ +
Sbjct: 434 YYHIKKDIPDFEEK------VAKAEFDPIKAW--LREKIHRWGSIYPPKELLKKAIGE-D 484
Query: 441 MDASALLQYFEPLY 454
MDA +++ + Y
Sbjct: 485 MDAEYFVRWVKEKY 498
>3dwc_A TCMCP-1, metallocarboxypeptidase; cowrin family of
metallocarboxypept carboxypeptidase, hydrolase; 2.10A
{Trypanosoma cruzi}
Length = 505
Score = 53.0 bits (126), Expect = 1e-07
Identities = 65/464 (14%), Positives = 134/464 (28%), Gaps = 68/464 (14%)
Query: 21 YPWQTYSNQDLRRQYKMYSILGSAALPYEKFQKCLKANVQYRETFDRRRLN--EKYGDKV 78
Q + +++RR +++ ++L K KA+ ++ ++ ++
Sbjct: 77 EKLQRANLREMRRAWELENLL-PEEFVERKTVLTTKAHQVWKTCREKNDFAGFLPTLKEL 135
Query: 79 VNRRGPIPAHLLGNMWAQTWGNIYDIVVPYPEKTPPDVSAELVRQGYTVHKMFRTAEEFF 138
+ GN + + DI P D VR ++ + +E
Sbjct: 136 IALFREEGKLRAGNSGKHPYEALVDIYEPGMTLQRLDEIFGNVRSWLP--ELLKEVQEKQ 193
Query: 139 TSINMSAMPPEFWERSMLEKPQGREVVCHASAWDFHDG--------------KDFRIKMC 184
++ + + P+ ++ R +DF G +D RI
Sbjct: 194 KALGETVLEPKGPFPVSKQEALCRFF-MDVWKFDFDGGRLDVSAHPFCGNSKEDVRITTK 252
Query: 185 TRVNE--EDLFTIHHEMGHVEYFIQYKDQPMAFREGANPGKNTRGWTALKDGLSF--YES 240
E L + HE GH +Y + + S +E
Sbjct: 253 YTETEFVTSLLGVIHETGHAKYEQNCGPKGFET-------------QPVCMARSLGVHEG 299
Query: 241 WVAEIGLAGTVGSVVMRLLAMQKFVPFPLVINRKFGIRTKINSDKTIFMVEAIFLF-KID 299
+ M LA + F T N + I V + D
Sbjct: 300 QSLFAEMQIGRSGAFMEFLAPRLVEYFG-----DQPAFTSSNMKRVIQRVSPGLIRIDAD 354
Query: 300 TFLINTFVNIMMDLWRWGVFKKDISHEEYNKHWWKLRHDYQGVEPPTHRSEDDFDPGAKY 359
V + ++ R + +I EE + W + Y G+E + E +
Sbjct: 355 ELCYPLHVMLRYEIERD-LMDGNIEAEEVPRVWNEKMKSYLGLETLGNDKEGCLQD--VH 411
Query: 360 HIV-ASVPYIRYFVSFVIQFQFHRALCEKAGEFDPNDPSKQPLHECDIYRSTEAGN---- 414
+ Y + ++ Q + + GE +D G+
Sbjct: 412 WSGGMFGYFPTYSLGAMVAAQLMSCVRRELGEEVVDD-------------CIRKGDLGKI 458
Query: 415 ---LLKNMLAMGSSKPWPDAMEAITGQREMDASALLQYFEPLYK 455
+ + GSS + + TG+ ++ ++ E Y+
Sbjct: 459 LAKQNEKIWQHGSSLTTDELLRQATGE-TLNPEHYRRHLERRYR 501
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 2e-07
Identities = 56/367 (15%), Positives = 106/367 (28%), Gaps = 125/367 (34%)
Query: 10 FTKDQWKELI-KYPWQTYSNQDLRRQYK-----MYSILGSAALP-------------YEK 50
T D+ K L+ KY QDL R+ SI+ ++ +K
Sbjct: 298 LTPDEVKSLLLKYLDC--RPQDLPREVLTTNPRRLSIIA-ESIRDGLATWDNWKHVNCDK 354
Query: 51 FQKCLKANVQYRETFDRRRLNEKYGDKVVNRRG-PIPAHLLGNMWAQTWGNIYDIVVPYP 109
+++++ E + R++ + V IP LL +W
Sbjct: 355 LTTIIESSLNVLEPAEYRKM---FDRLSVFPPSAHIPTILLSLIWFDV-----------I 400
Query: 110 EKTPPDVSAELVRQGYTVHKMFRTAEEFFTSINMSAMPPEFWERSMLEKPQGREVVCHAS 169
+ V +L + S++EK Q +E
Sbjct: 401 KSDVMVVVNKLHK------------------------------YSLVEK-QPKESTIS-- 427
Query: 170 AWDFHDGKDFRIKMCTRVNEEDLFTIHHEMGHVEYFIQYKDQPMAFREGANPGKNTRGWT 229
I + +V E+ + +H + V+ Y N K
Sbjct: 428 ---IPS-----IYLELKVKLENEYALHRSI--VD---HY-----------NIPKTFDSDD 463
Query: 230 ALKDGLSFYESWVAEIG--LAGTVGSVVMRLLAMQKFVPFPLV-INRKFGIRTKINSDKT 286
+ L Y + + IG L + ++ F +V ++ +F + KI D T
Sbjct: 464 LIPPYLDQY--FYSHIGHHLKN--------IEHPERMTLFRMVFLDFRF-LEQKIRHDST 512
Query: 287 IFMVEAIFLFKIDTFLINTFVNIMMDLWRWGVFKKDI--SHEEYNKHWWKLRHDYQGVEP 344
+ L N + L +K I + +Y + + +E
Sbjct: 513 AWNASGSIL------------NTLQQL---KFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 345 PTHRSED 351
S+
Sbjct: 558 NLICSKY 564
>3hq2_A Bacillus subtilis M32 carboxypeptidase; hydrolase, metal-binding,
metalloprotease, protease, zinc; 2.90A {Bacillus
subtilis}
Length = 501
Score = 46.4 bits (109), Expect = 2e-05
Identities = 48/290 (16%), Positives = 87/290 (30%), Gaps = 45/290 (15%)
Query: 178 DFRIKMCTRVNE--EDLFTIHHEMGHVEYF----IQYKDQPMAFREGANPGKNTRGWTAL 231
D R+ + +F HE GH Y +
Sbjct: 244 DVRVTTRYDEKDFRTAIFGTIHECGHAIYEQNIDEALSGTNL--------------SDGA 289
Query: 232 KDGLSFYESWVAEIGLAGTVGSVVMRLLAMQKFVPFPLVINRKFGIRTKINSDKTIFMVE 291
G+ +S E + +Q+ P IN K F+
Sbjct: 290 SMGIHESQSLFYENFIGRNKHFWTPYYKKIQEASPVQFKDISLDDFVRAINESKPSFI-- 347
Query: 292 AIFLFKIDTFLINTFVNIMMDLWRWGVFKKDISHEEYNKHWWKLRHDYQGVEPPTHRSED 351
+ D + I ++ + +F ++S E+ W + DY G+ P T D
Sbjct: 348 ---RVEADELTYPLHIIIRYEIEKA-IFSNEVSVEDLPSLWNQKYQDYLGITPQT----D 399
Query: 352 DFDPGAKYHIVASVP--YIRYFVSFVIQFQFHRALCEKAGEFDPNDPSKQPLHECDIYRS 409
H + Y + ++ Q + + E EFD L + +
Sbjct: 400 AEGILQDVHWAGGDFGYFPSYALGYMYAAQLKQKMLEDLPEFDAL------LERGEFHPI 453
Query: 410 TEAGNLLKNMLAMGSSKPWPDAMEAITGQREMDASALLQY----FEPLYK 455
+ L + + G K D ++ TG+ E++ L+ Y + LY
Sbjct: 454 KQW--LTEKVHIHGKRKKPLDIIKDATGE-ELNVRYLIDYLSNKYSNLYL 500
>3hoa_A Thermostable carboxypeptidase 1; proline-rich loop, hydrolase;
2.10A {Thermus thermophilus HB27} PDB: 1wgz_A
Length = 509
Score = 43.3 bits (101), Expect = 2e-04
Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 18/161 (11%)
Query: 299 DTFLINTFVNIMMDLWRWGVFKKDISHEEYNKHWWKLRHDYQGVEPPTHRSEDDFDPGAK 358
D N + + ++L +F+ ++S E+ + W + D+ GV P ++ D
Sbjct: 362 DEVTYNLHILVRLELELA-LFRGELSPEDLPEAWAEKYRDHLGVAPKDYK---DGVMQDV 417
Query: 359 YHIVASVPYIR-YFVSFVIQFQFHRALCEKAGEFDPNDPSKQPLHECDIYRSTEAGNLLK 417
+ Y Y + + QF + + G +P + +
Sbjct: 418 HWAGGLFGYFPTYTLGNLYAAQFFQKAEAELGPLEPR------FARGEFQPFLDW--TRA 469
Query: 418 NMLAMGSSKPWPDAMEAITGQREMDASALLQY----FEPLY 454
+ A GS +E +TG+ A L Y + LY
Sbjct: 470 RIHAEGSRFRPRVLVERVTGE-APSARPFLAYLEKKYAALY 509
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.008
Identities = 39/212 (18%), Positives = 58/212 (27%), Gaps = 98/212 (46%)
Query: 60 QYRETFDRRRLNEKYGDKVVNRRGPI--PAHLLGNMWAQTWGNIYDIVVPYPEKTPPDVS 117
Q R F R+L K NR P+ P H ++
Sbjct: 404 QSRIPFSERKL------KFSNRFLPVASPFH-----------------SHLLVPASDLIN 440
Query: 118 AELVRQGYTVHKMFRTAEEFFTSINMSAMPPEFWERSMLEKPQGREVVCHASAWDFHDGK 177
+LV+ + + ++ P V +D DG
Sbjct: 441 KDLVKNNVS------------------------FNAKDIQIP-----V-----YDTFDGS 466
Query: 178 DFR----------IKMCTR--VNEEDLFTIHHEMGHVEYFIQYKDQPMAFREGANPGKNT 225
D R + R V E T + H+ + F G PG +
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWET--TTQFKATHI----------LDF--G--PGGAS 510
Query: 226 RGWTAL----KDGLSFYESWVAEIGLAGTVGS 253
G L KDG + V I +AGT+
Sbjct: 511 -GLGVLTHRNKDG-----TGVRVI-VAGTLDI 535
Score = 36.2 bits (83), Expect = 0.029
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 18/98 (18%)
Query: 364 SVPYIRYFVSFVIQFQFHRALCEKAGEFDPNDPSKQPLHECDIYRSTEAGNLLKNMLAMG 423
VP +F++ +Q QF++ L E F +D P L+ L
Sbjct: 21 LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE------------LVGKFLGYV 68
Query: 424 SSKPWPDAMEAITGQREMDASALLQYFEPLYKWLEEEN 461
SS P GQ + + L FE Y LE +
Sbjct: 69 SSLVEPSK----VGQFDQVLNLCLTEFENCY--LEGND 100
Score = 33.9 bits (77), Expect = 0.14
Identities = 25/201 (12%), Positives = 49/201 (24%), Gaps = 80/201 (39%)
Query: 335 LRHDYQGVEP-PTHRSEDDFDPGAKYHIVASVPYIRYFVSFVIQF--------------- 378
L+ + + P PT D +P +V F+ +V
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELVGK------FLGYVSSLVEPSKVGQFDQVLNL 86
Query: 379 ---QFHRA-LCEK-----AGEFDPNDPSKQPLHECDI---YRSTEAGNLLKNMLAMGSSK 426
+F L A + + + + I + + +S
Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK--RPFDKKSNSA 144
Query: 427 PWPDAME------AI-TGQ----------REM-------------DASALLQYF------ 450
+ E AI GQ R++ ++ L
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 451 -EPLY-------KWLEEENAR 463
E ++ +WLE +
Sbjct: 205 AEKVFTQGLNILEWLENPSNT 225
Score = 30.8 bits (69), Expect = 1.2
Identities = 78/486 (16%), Positives = 128/486 (26%), Gaps = 192/486 (39%)
Query: 8 AQF-----TKDQWKELIKYPWQTYSNQDLRRQYKMYS------ILGSAALPYEKFQKCLK 56
A F T D ++EL +DL Y+ Y I SA E + L
Sbjct: 158 AIFGGQGNTDDYFEEL----------RDL---YQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 57 ANVQYRETFD--------RRRLNEKYGDKVVNRRGPI--PAHLLGNMWAQTWGNIYDIVV 106
A + + + ++ Y + PI P + + A Y +
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSI-----PISCPLIGVIQL-AH-----YVVTA 253
Query: 107 PYPEKTPPDVSAELVRQGYTVHK----------MFRTAEEFFTSINMSAMPPEFW--ERS 154
TP ++ + L +G T H + E FF S+ A+ F+ R
Sbjct: 254 KLLGFTPGELRSYL--KGATGHSQGLVTAVAIAETDSWESFFVSV-RKAITVLFFIGVRC 310
Query: 155 MLEKPQGREVVCHASAWDFHDGKDFRIK----M--CTRVNEEDLFTIHHEMGHVEYFIQY 208
P D + M + + +E + +V +
Sbjct: 311 YEAYPN-----TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD------YVNKTNSH 359
Query: 209 KDQPMAFREGANPGKNTRGWTALKDGLSFYESWVAEIGLAGTVGS---VVMRLLAM---- 261
+ +L +G ++ V ++G S + + L
Sbjct: 360 LPA------------GKQVEISLVNG---AKNLV----VSGPPQSLYGLNLTLRKAKAPS 400
Query: 262 ---QKFVPFPLVINRK--FGIRTKINSDKTIFMVEAIFLFKIDT-----FLINTFVNIMM 311
Q +PF RK F R FL + + L+ I
Sbjct: 401 GLDQSRIPFS---ERKLKFSNR---------------FL-PVASPFHSHLLVPASDLINK 441
Query: 312 DLWR----WG-------VFK----KDISHEEYNK-------------HWWKLRHDYQGVE 343
DL + + V+ D+ + W
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF----- 496
Query: 344 PPTHRSEDDFDPGAKYHIVASVPY------IRYFVSFVIQFQFHRALCEKAGEFD--PND 395
TH DF PG + +R VI AG D P+D
Sbjct: 497 KATHIL--DFGPGGASGLGVLTHRNKDGTGVR-----VIV----------AGTLDINPDD 539
Query: 396 P--SKQ 399
KQ
Sbjct: 540 DYGFKQ 545
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion,
extrace matrix, glycoprotein, secreted; 1.45A {Homo
sapiens}
Length = 149
Score = 32.9 bits (74), Expect = 0.10
Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 7/86 (8%)
Query: 340 QGVEPPTHR---SEDDFDPGAKYHIVASVPYIRYFVSFVIQFQF----HRALCEKAGEFD 392
+G + R D + PG Y + S YF F + + AG F
Sbjct: 19 EGYTEFSLRVEGDPDFYKPGTSYRVTLSAAPPSYFRGFTLIALRENREGDKEEDHAGTFQ 78
Query: 393 PNDPSKQPLHECDIYRSTEAGNLLKN 418
D + TE+ +
Sbjct: 79 IIDEEETQFMSNCPVAVTESTPRRRT 104
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 33.4 bits (76), Expect = 0.15
Identities = 15/65 (23%), Positives = 19/65 (29%), Gaps = 17/65 (26%)
Query: 75 GDKVVNRRGPIPAHLLGNMWAQTWGNIY-----DIVVPYPEKTPPDVSAELVRQGYTVHK 129
K V A + G M++Q Y D + PE P A T
Sbjct: 115 MGKTV-------AAIGGAMYSQ-----YRCIPADQCLVLPEGATPADGASSFVNPLTALG 162
Query: 130 MFRTA 134
M T
Sbjct: 163 MVETM 167
>3coo_A Spondin-1; reelin-N domain, cell adhesion, extracellular MAT
glycoprotein, secreted; 2.00A {Homo sapiens} PDB: 2zot_A
Length = 180
Score = 31.0 bits (69), Expect = 0.56
Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 7/86 (8%)
Query: 340 QGVEPPTHR---SEDDFDPGAKYHIVASVPYIRYFVSFVIQFQF----HRALCEKAGEFD 392
+G + R D + PG Y + S YF F + + AG F
Sbjct: 34 EGYTEFSLRVEGDPDFYKPGTSYRVTLSAAPPSYFRGFTLIALRENREGDKEEDHAGTFQ 93
Query: 393 PNDPSKQPLHECDIYRSTEAGNLLKN 418
D + TE+ +
Sbjct: 94 IIDEEETQFMSNCPVAVTESTPRRRT 119
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.93
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 451 EPLYKWLEEENARTGEHIGWEATDKKVFRSDAEKSR--YMEEHEAYLRKQ 498
E + KW EE+ R E ++ +R A+K + + + K
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 28.9 bits (66), Expect = 1.6
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 218 GANPGKNTRGWTAL 231
G +P N RG T L
Sbjct: 1 GIDPFTNHRGETLL 14
>2lhj_A High mobility group protein homolog NHP1; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; NMR {Babesia bovis}
Length = 97
Score = 28.1 bits (63), Expect = 1.8
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 472 ATDKKVFRSDAE--KSRYMEEHEAYLRKQV 499
+KK + ++ + RY E Y +++V
Sbjct: 68 DEEKKPYERMSDEDRVRYEREKAEYAQRKV 97
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding
protein; NMR {Drosophila melanogaster}
Length = 73
Score = 26.9 bits (60), Expect = 3.5
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 471 EATDKKVFRSDAE--KSRYMEEHEAYLRK 497
E DK + A K RY +E Y +
Sbjct: 44 ELKDKSKWEDAAAKDKQRYHDEMRNYKPE 72
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 28.8 bits (64), Expect = 4.9
Identities = 39/218 (17%), Positives = 67/218 (30%), Gaps = 47/218 (21%)
Query: 279 TKINSDKTIFMVEAIFLFKIDTFL----------INTFVNIMMDLWRWGVFKKDISHEEY 328
+++N K + E L+ FL I T +N D W+ G FK I+
Sbjct: 290 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVAN 349
Query: 329 NKHWWKLRHDYQGVEPPTHRS-----EDDFDPGAKYHIVASVPYIRYFVSFVIQFQFH-- 381
+ +++ Y +P D + + V + ++ Q H
Sbjct: 350 VELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNN 409
Query: 382 --------------------RALCEKAGEFDP-NDPSKQPLHECDIYRSTEAGNLLKNML 420
R + FD + + HE +R A N
Sbjct: 410 KSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNR 469
Query: 421 AMGS------SKPWPDAME--AITGQREMDASALLQYF 450
S + DAM+ + + E+ A LLQ+F
Sbjct: 470 WKQSVELCKKDSLYKDAMQYASESKDTEL-AEELLQWF 506
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo
sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Length = 217
Score = 28.2 bits (63), Expect = 5.1
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 9/29 (31%)
Query: 183 MCTR-----VNEEDL----FTIHHEMGHV 202
+C+ V E+D FT+ HE+GH+
Sbjct: 124 ICSPERSCAVIEDDGLHAAFTVAHEIGHL 152
>3pty_A Arabinosyltransferase C; beta-sandwich, carbohydrate binding,
carbohydrate; HET: AFO; 2.00A {Mycobacterium
tuberculosis}
Length = 406
Score = 28.8 bits (64), Expect = 5.3
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 78 VVNRRGPIPAHLLGNMWAQTWGNIYDIVVPYPEKTPPDV 116
++ R + ++L + W + WG + + YP+ P D+
Sbjct: 320 LLMRATTVASYLKDD-WFRDWGALQRLTPYYPDAQPADL 357
>3fvy_A Dipeptidyl-peptidase 3; SGC, DPP3, alternative splicing,
aminopeptidase, cytoplasm, hydrolase, metal-binding,
metalloprotease, phosphoprotein; 1.90A {Homo sapiens}
PDB: 3t6b_A 3t6j_A
Length = 728
Score = 28.3 bits (62), Expect = 6.9
Identities = 14/89 (15%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 1 MNKSAEHAQFTKDQWKELIKYPWQTYSNQDLRRQYKMYSILGSAALPYEKFQKCLKANVQ 60
+++ A T+++++ + Y YSN + + + LP EK ++ + +
Sbjct: 77 LHQHALAEGLTEEEYQAFLVYAAGVYSNMGNYKSFGDTKFV--PNLPKEKLERVILGSEA 134
Query: 61 YRETFDRRRLNEKYGDKVVNRRGPIPAHL 89
++ + R + +++ P HL
Sbjct: 135 AQQHPEEVRGLWQTCGELMFSLEPRLRHL 163
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 27.9 bits (63), Expect = 7.8
Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 18/54 (33%)
Query: 187 VNEEDL--FT-IHH--EMGH---VEYFIQYKDQPMAFREGANP-GKNTRGWTAL 231
+ D IH G V I+ G +P +N G TAL
Sbjct: 13 RIKSDDENMEKIHVAARKGQTDEVRRLIET---------GVSPTIQNRFGCTAL 57
>3nm9_A HMG-D, high mobility group protein D; DNA bending,
non-sequence-specific, HMG chromosomal protein; HET:
DNA; 2.85A {Drosophila melanogaster} PDB: 1e7j_A* 1hma_A
1qrv_A*
Length = 73
Score = 25.7 bits (57), Expect = 8.0
Identities = 5/29 (17%), Positives = 9/29 (31%), Gaps = 2/29 (6%)
Query: 471 EATDKKVFRSDAE--KSRYMEEHEAYLRK 497
DK + + A K Y + +
Sbjct: 44 AMKDKSEWEAKAAKAKDDYDRAVKEFEAN 72
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 27.9 bits (63), Expect = 8.1
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 16/41 (39%)
Query: 198 EMGH---VEYFIQYKDQPMAFREGANPG----KNTRGWTAL 231
H +++ + + A +N G TAL
Sbjct: 18 IHQHEPFLDFLLGF---------SAGHEYLDLQNDLGQTAL 49
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of
chromatin subfamily...; structural DNA-binding protein
BRAF35, DNA-bending; NMR {Mus musculus}
Length = 92
Score = 26.2 bits (58), Expect = 9.0
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 472 ATDKKVFRSDAE--KSRYMEEHEAYLRKQ 498
+K+ + +AE K +Y++E AY + +
Sbjct: 51 PAEKQRYLDEAEKEKQQYLKELWAYQQSE 79
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 28.1 bits (62), Expect = 9.4
Identities = 38/218 (17%), Positives = 70/218 (32%), Gaps = 47/218 (21%)
Query: 279 TKINSDKTIFMVEAIFLFKIDTFLINTF------VNIMM----DLWRWGVFKKDISHEEY 328
+++N K + E L+ FL + + + MM D W+ G FK I+
Sbjct: 1341 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVAN 1400
Query: 329 NKHWWKLRHDYQGVEPPTHRS-----EDDFDPGAKYHIVASVPYIRYFVSFVIQFQFH-- 381
+ +++ Y +P D + + V + ++ Q H
Sbjct: 1401 VELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNN 1460
Query: 382 --------------------RALCEKAGEFDP-NDPSKQPLHECDIYRSTEAGNLLKN-- 418
R + FD + + HE +R A N
Sbjct: 1461 KSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNR 1520
Query: 419 -MLAMGSSKP---WPDAME--AITGQREMDASALLQYF 450
++ K + DAM+ + + E+ A LLQ+F
Sbjct: 1521 WKQSVELCKKDSLYKDAMQYASESKDTEL-AEELLQWF 1557
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.431
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,124,111
Number of extensions: 500340
Number of successful extensions: 1099
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1082
Number of HSP's successfully gapped: 55
Length of query: 499
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 401
Effective length of database: 3,965,535
Effective search space: 1590179535
Effective search space used: 1590179535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.0 bits)