RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3039
(118 letters)
>2x96_A Angiotensin converting enzyme; hydrolase, ACE inhibitor, zinc
metallopeptidase; HET: RX3 EPE NAG BMA MAN; 1.85A
{Drosophila melanogaster} PDB: 2x8z_A* 2x90_A* 2x91_A*
2x8y_A* 2x97_A* 2xhm_A* 3zqz_A* 2x94_A* 2x92_A* 2x93_A*
2x95_A* 1j36_A* 1j37_A* 1j38_A
Length = 598
Score = 136 bits (343), Expect = 5e-39
Identities = 53/94 (56%), Positives = 77/94 (81%), Gaps = 1/94 (1%)
Query: 1 MFRTAEEFFTSINMSAMPPEFWERSMLEKPQ-GREVVCHASAWDFHDGKDFRIKMCTRVN 59
MF+ ++FFTS+N++ +P +FW++S++EKP GR++VCHASAWDF+ D RIK CTRV
Sbjct: 283 MFQMGDDFFTSMNLTKLPQDFWDKSIIEKPTDGRDLVCHASAWDFYLTDDVRIKQCTRVT 342
Query: 60 EEDLFTIHHEMGHVEYFIQYKDQPMAFREGANPG 93
++ LFT+HHE+GH++YF+QY+ QP +R GANPG
Sbjct: 343 QDQLFTVHHELGHIQYFLQYQHQPFVYRTGANPG 376
>3nxq_A Angiotensin-converting enzyme; dicarboxy zinc metallopeptidase,
hydrolase, hydrolase-hydrol inhibitor complex; HET: RX4
NAG FUC BMA P6G PG4; 1.99A {Homo sapiens} PDB: 2xyd_A*
2c6n_A* 2c6f_A*
Length = 629
Score = 133 bits (336), Expect = 5e-38
Identities = 67/94 (71%), Positives = 79/94 (84%), Gaps = 1/94 (1%)
Query: 1 MFRTAEEFFTSINMSAMPPEFWERSMLEKPQ-GREVVCHASAWDFHDGKDFRIKMCTRVN 59
MFR AEEFFTS+ +S MPPEFWE SMLEKP GREVVCHASAWDF++ KDFRIK CTRV
Sbjct: 293 MFRVAEEFFTSLELSPMPPEFWEGSMLEKPADGREVVCHASAWDFYNRKDFRIKQCTRVT 352
Query: 60 EEDLFTIHHEMGHVEYFIQYKDQPMAFREGANPG 93
+ L T+HHEMGH++Y++QYKD P++ R GANPG
Sbjct: 353 MDQLSTVHHEMGHIQYYLQYKDLPVSLRRGANPG 386
>1uze_A Angiotensin converting enzyme; metalloprotease, inhibitor,
enalaprilat, zinc dependant peptidase, anti-hypertensive
drug; HET: EAL; 1.82A {Homo sapiens} SCOP: d.92.1.5 PDB:
1o8a_A* 1o86_A* 1uzf_A* 2oc2_A* 2ydm_A* 2iux_A* 2iul_A*
2xy9_A* 3bkk_A* 3bkl_A* 3l3n_A*
Length = 589
Score = 131 bits (330), Expect = 3e-37
Identities = 66/94 (70%), Positives = 79/94 (84%), Gaps = 1/94 (1%)
Query: 1 MFRTAEEFFTSINMSAMPPEFWERSMLEKPQ-GREVVCHASAWDFHDGKDFRIKMCTRVN 59
MF+ A++FFTS+ + +PPEFW +SMLEKP GREVVCHASAWDF++GKDFRIK CT VN
Sbjct: 279 MFKEADDFFTSLGLLPVPPEFWNKSMLEKPTDGREVVCHASAWDFYNGKDFRIKQCTTVN 338
Query: 60 EEDLFTIHHEMGHVEYFIQYKDQPMAFREGANPG 93
EDL HHEMGH++YF+QYKD P+A REGANPG
Sbjct: 339 LEDLVVAHHEMGHIQYFMQYKDLPVALREGANPG 372
>1r42_A Angiotensin I converting enzyme 2; zinc metallopeptidase domain, Na
open conformation, chloride ION binding site; HET: NAG;
2.20A {Homo sapiens} SCOP: d.92.1.5 PDB: 1r4l_A* 3sci_A
3scj_A 2ajf_A* 3kbh_A* 3d0g_A* 3d0h_A* 3d0i_A* 3sck_A
3scl_A
Length = 615
Score = 124 bits (313), Expect = 8e-35
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 2/94 (2%)
Query: 1 MFRTAEEFFTSINMSAMPPEFWERSMLEKPQ-GREVVCHASAWDFHDGKDFRIKMCTRVN 59
+F+ AE+FF S+ + M FWE SML P ++ VCH +AWD G DFRI MCT+V
Sbjct: 307 IFKEAEKFFVSVGLPNMTQGFWENSMLTDPGNVQKAVCHPTAWDLGKG-DFRILMCTKVT 365
Query: 60 EEDLFTIHHEMGHVEYFIQYKDQPMAFREGANPG 93
+D T HHEMGH++Y + Y QP R GAN G
Sbjct: 366 MDDFLTAHHEMGHIQYDMAYAAQPFLLRNGANEG 399
>1ka2_A M32 carboxypeptidase; hexxh motif, M32 family, metallopeptidase;
2.20A {Pyrococcus furiosus} SCOP: d.92.1.5 PDB: 1k9x_A
1ka4_A
Length = 499
Score = 30.6 bits (68), Expect = 0.11
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 6/60 (10%)
Query: 32 GREVVCHASAWDFHDGKDFRIKMCTRVNE--EDLFTIHHEMGHVEYF----IQYKDQPMA 85
R V +D RI + + + HE GH Y ++ P+A
Sbjct: 231 ARLDVSAHPFTTEFGIRDVRITTRYEGYDFRRTILSTVHEFGHALYELQQDERFMFTPIA 290
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase
inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB:
3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Length = 564
Score = 27.8 bits (62), Expect = 1.00
Identities = 5/28 (17%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 62 DLFTIHHEMGH-VEYFIQYKDQPMAFRE 88
D+ + HE GH + + + +
Sbjct: 350 DIDVLTHEAGHAFQVYESRHYEIPEYNW 377
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone,
actin-like ATPase domain, beta/BETA/alpha swiveling
domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP:
c.8.6.1 c.55.1.6 c.55.1.6
Length = 607
Score = 27.2 bits (60), Expect = 1.3
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 51 RIKMCTRVNEEDLFTIHHEMGHVEYFIQYKDQPMA 85
IK E LF+I HE G VE+F + ++
Sbjct: 462 AIKKYPLAKVESLFSIRHENGAVEFF----REALS 492
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo
sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Length = 217
Score = 27.0 bits (60), Expect = 1.3
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 9/29 (31%)
Query: 54 MCTR-----VNEEDL----FTIHHEMGHV 73
+C+ V E+D FT+ HE+GH+
Sbjct: 124 ICSPERSCAVIEDDGLHAAFTVAHEIGHL 152
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET:
ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6
c.55.1.6 PDB: 2d0p_A
Length = 610
Score = 27.2 bits (60), Expect = 1.5
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 51 RIKMCTRVNEEDLFTIHHEMGHVEYFIQYKDQPMA 85
IK E LF + HE G V++F P+
Sbjct: 460 EIKKYPLAKVESLFHLRHEDGSVQFF----STPLP 490
>3sks_A Putative oligoendopeptidase F; structural genomics, center for
structural genomics of infec diseases, csgid, protease,
hydrolase; 2.05A {Bacillus anthracis}
Length = 567
Score = 27.0 bits (60), Expect = 1.8
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 62 DLFTIHHEMGH-VEYFIQYKDQPMAFR 87
D+ + HE GH + + K + +
Sbjct: 353 DIDVLTHEAGHAFQVYESRKFEIPEYN 379
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 2.8
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 11/49 (22%)
Query: 8 FFTSINMSAMPPEFWERSMLEKPQGREVVCHASA-----WDFHDGKDFR 51
F + + + A + + V +A +D DG D R
Sbjct: 427 FHSHLLVPASD------LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Score = 25.0 bits (54), Expect = 8.6
Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 38/114 (33%)
Query: 20 EFWERSMLEKPQGREVVCHASAWDFHDGKD-------------FRIKMC-----TRVNEE 61
EF E L +G ++ HA A D ++ + +
Sbjct: 90 EF-ENCYL---EGNDI--HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 62 DLFTIHHEMGHVEYFIQYKDQPMAFREGANPGKNTRGWVAELNSIHK--KPNLR 113
LF G+ + + Q G NT + EL +++ +
Sbjct: 144 ALFR-AVGEGNAQLVAIFGGQ----------G-NTDDYFEELRDLYQTYHVLVG 185
>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2,
protein ST initiative; 2.50A {Enterococcus faecium}
Length = 587
Score = 26.2 bits (58), Expect = 3.1
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 61 EDLFTIHHEMGH 72
+ LFT+ HEMGH
Sbjct: 362 DQLFTLVHEMGH 373
>3ce2_A Putative peptidase; structural genomics, unknown function, P
protein structure initiative; 2.60A {Chlamydophila
abortus}
Length = 618
Score = 25.4 bits (56), Expect = 5.5
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 8/37 (21%)
Query: 62 DLFTIHHEMGHVEYF--------IQYKDQPMAFREGA 90
D+ I HE GH + P+ E A
Sbjct: 396 DVSVIAHEGGHSMHSYFSRKHQPFHDAQYPIFLAEIA 432
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius}
SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Length = 299
Score = 25.2 bits (56), Expect = 5.7
Identities = 3/13 (23%), Positives = 8/13 (61%)
Query: 62 DLFTIHHEMGHVE 74
D++TI+ ++
Sbjct: 136 DIYTINKHFNTID 148
>3gs9_A Protein GP18; NP_465809.1, structural genomics center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: MLY MSE; 1.70A {Listeria monocytogenes egd-e}
Length = 342
Score = 25.5 bits (55), Expect = 5.9
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 44 FHDGKDFRIKMCTRVNEEDLFTIHHEMGHVEYFIQYK 80
+ G++F +K + + H+ Y Q
Sbjct: 63 YFRGQEFVVKQLSHDAVGKTLSKDIRAPHIYYTCQDG 99
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P;
1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB:
1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A*
1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A*
2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Length = 310
Score = 25.2 bits (56), Expect = 6.3
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 62 DLFTIHHEMGHVE 74
DLFTI G ++
Sbjct: 141 DLFTIQETQGRLD 153
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate
transcarbamoylase, pyrimidine biosynthesis
thermostability, substrate channeling; 2.50A
{Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Length = 306
Score = 25.2 bits (56), Expect = 6.8
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 62 DLFTIHHEMGHVE 74
DL+TI E+G ++
Sbjct: 138 DLYTIMREIGRID 150
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor
complex, transferase; HET: PAL; 1.80A {Pyrococcus
abyssi} SCOP: c.78.1.1 c.78.1.1
Length = 308
Score = 24.8 bits (55), Expect = 8.9
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 62 DLFTIHHEMGHVE 74
DL+TI E G ++
Sbjct: 142 DLYTIKKEFGRID 154
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.443
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,923,138
Number of extensions: 101344
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 25
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)