BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3040
         (189 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XMC|A Chain A, C323m Mutant Structure Of Mouse Carnitine
           Octanoyltransferase
 pdb|1XMC|B Chain B, C323m Mutant Structure Of Mouse Carnitine
           Octanoyltransferase
          Length = 612

 Score = 27.7 bits (60), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 135 RQLASSHVLH----LQVALYALFYQLYGMFPCTFLSYLKQE-YNMRCDNVNACNV 184
           ++L     LH    +Q+AL   +Y+L+G   C + + + +  Y+ R + V +C V
Sbjct: 406 KKLTKEEALHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTV 460


>pdb|1XMD|A Chain A, M335v Mutant Structure Of Mouse Carnitine
           Octanoyltransferase
 pdb|1XMD|B Chain B, M335v Mutant Structure Of Mouse Carnitine
           Octanoyltransferase
          Length = 612

 Score = 27.3 bits (59), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 135 RQLASSHVLH----LQVALYALFYQLYGMFPCTFLSYLKQE-YNMRCDNVNACNV 184
           ++L     LH    +Q+AL   +Y+L+G   C + + + +  Y+ R + V +C V
Sbjct: 406 KKLTKEEALHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTV 460


>pdb|1XL7|A Chain A, Crystal Structure Of Mouse Carnitine Octanoyltransferase
 pdb|1XL7|B Chain B, Crystal Structure Of Mouse Carnitine Octanoyltransferase
 pdb|1XL8|A Chain A, Crystal Structure Of Mouse Carnitine Octanoyltransferase
           In Complex With Octanoylcarnitine
 pdb|1XL8|B Chain B, Crystal Structure Of Mouse Carnitine Octanoyltransferase
           In Complex With Octanoylcarnitine
          Length = 612

 Score = 26.6 bits (57), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 135 RQLASSHVLH----LQVALYALFYQLYGMFPCTF-LSYLKQEYNMRCDNVNACNV 184
           ++L     LH    +Q+AL   +Y+L+G   C +  +  +  Y+ R + V +C V
Sbjct: 406 KKLTKEEALHPDTFIQLALQLAYYRLHGRPGCCYETAXTRYFYHGRTETVRSCTV 460


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.138    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,524,556
Number of Sequences: 62578
Number of extensions: 138025
Number of successful extensions: 309
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 309
Number of HSP's gapped (non-prelim): 3
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)