BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3040
         (189 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9EP53|TSC1_MOUSE Hamartin OS=Mus musculus GN=Tsc1 PE=1 SV=1
          Length = 1161

 Score =  158 bits (400), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 118/173 (68%), Gaps = 1/173 (0%)

Query: 3   PWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQ 62
           P LVN LVDY+L +NS   + +L  ++EPHDK L D++ E +   +TRL  L+LLGH+V+
Sbjct: 39  PMLVNTLVDYYLETNSQPVLHILTTLQEPHDKHLLDKINEYVGKAATRLSILSLLGHVVR 98

Query: 63  RQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEV 122
            QP+W +K+   P L+  LLK LK ++D+V + + +LVL  +LP+IP     HL D F++
Sbjct: 99  LQPSWKHKLSQAP-LLPSLLKCLKMDTDVVVLTTGVLVLITMLPMIPQSGKQHLLDFFDI 157

Query: 123 FSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMR 175
           F RL++W    P  +   +++HL  ++YALF++LYGM+PC F+S+L+  Y+M+
Sbjct: 158 FGRLSSWCLKKPGHVTEVYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYSMK 210


>sp|Q9Z136|TSC1_RAT Hamartin OS=Rattus norvegicus GN=Tsc1 PE=1 SV=1
          Length = 1163

 Score =  157 bits (397), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 118/173 (68%), Gaps = 1/173 (0%)

Query: 3   PWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQ 62
           P LVN LVDY+L +NS   + +L  ++EPHDK L D++ E +   +TRL  L+LLGH+V+
Sbjct: 39  PMLVNTLVDYYLETNSQPVLHILTTLQEPHDKHLLDKMNEYVGKAATRLSILSLLGHVVR 98

Query: 63  RQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEV 122
            QP+W +K+   P L+  LLK LK ++D+V + + +LVL  +LP+IP     HL D F++
Sbjct: 99  LQPSWKHKLSQAP-LLPSLLKCLKMDTDVVVLTTGVLVLITMLPMIPQSGKQHLLDFFDI 157

Query: 123 FSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMR 175
           F RL++W    P  +   +++HL  ++YALF++LYGM+PC F+S+L+  Y+M+
Sbjct: 158 FGRLSSWCLKKPGHVTEVYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYSMK 210


>sp|Q92574|TSC1_HUMAN Hamartin OS=Homo sapiens GN=TSC1 PE=1 SV=2
          Length = 1164

 Score =  153 bits (387), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 76/173 (43%), Positives = 120/173 (69%), Gaps = 1/173 (0%)

Query: 3   PWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQ 62
           P LVN LVDY+L ++S  A+ +L  ++EPHDK L DR+ E +   +TRL  L+LLGH+++
Sbjct: 39  PMLVNTLVDYYLETSSQPALHILTTLQEPHDKHLLDRINEYVGKAATRLSILSLLGHVIR 98

Query: 63  RQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEV 122
            QP+W +K+   P L+  LLK LK ++D+V + + +LVL  +LP+IP     HL D F++
Sbjct: 99  LQPSWKHKLSQAP-LLPSLLKCLKMDTDVVVLTTGVLVLITMLPMIPQSGKQHLLDFFDI 157

Query: 123 FSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMR 175
           F RL++W    P  +A  +++HL  ++YALF++LYGM+PC F+S+L+  Y+M+
Sbjct: 158 FGRLSSWCLKKPGHVAEVYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYSMK 210


>sp|Q7VP83|PDXH_HAEDU Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Haemophilus ducreyi
           (strain 35000HP / ATCC 700724) GN=pdxH PE=3 SV=1
          Length = 209

 Score = 31.6 bits (70), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 124 SRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQ 170
           SR+ AW SD  + L+S   L  +VAL +  Y L+   P  +  YL Q
Sbjct: 129 SRIGAWASDQSQVLSSKRTLVAKVALLSAKYPLFVPRPAHWGGYLVQ 175


>sp|A8G7U0|SYGB_SERP5 Glycine--tRNA ligase beta subunit OS=Serratia proteamaculans
           (strain 568) GN=glyS PE=3 SV=1
          Length = 689

 Score = 30.8 bits (68), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 5   LVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHI 60
           L + L  YF A N   A+  L  +REP D F FD V       + R+  LTLL  +
Sbjct: 621 LRDKLEPYFAAGNYQDALVELADLREPVDAF-FDNVMVMAEDEAVRVNRLTLLSKL 675


>sp|Q95Q95|TOR_CAEEL Target of rapamycin homolog OS=Caenorhabditis elegans GN=let-363
           PE=2 SV=3
          Length = 2697

 Score = 30.4 bits (67), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 34  KFLFDRVAETLRSPST---RLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESD 90
           K LF+++   +   S+   R  AL  +G I +     +     +P+L+ DLL+ILKT   
Sbjct: 818 KPLFEKLTHMINDSSSLHKREAALRAIGGICRSTAYVVDPYRDYPSLLDDLLRILKTVMS 877

Query: 91  MVEVISALLVLNILLPIIP 109
                 A+  L IL  I P
Sbjct: 878 NTMRREAIKTLGILGAIDP 896


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.140    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,775,076
Number of Sequences: 539616
Number of extensions: 2414921
Number of successful extensions: 7180
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7172
Number of HSP's gapped (non-prelim): 14
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)