Query psy3040
Match_columns 189
No_of_seqs 92 out of 107
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 23:58:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk2_A LP04448P; mini spindles 91.5 0.69 2.4E-05 36.7 7.7 91 31-125 15-105 (242)
2 2qk1_A Protein STU2; STU2P, XM 90.2 2 6.8E-05 35.1 9.5 113 5-119 105-234 (249)
3 2qk1_A Protein STU2; STU2P, XM 88.3 1.3 4.4E-05 36.2 7.0 90 31-123 16-113 (249)
4 2qk2_A LP04448P; mini spindles 87.5 2.2 7.6E-05 33.7 7.8 112 5-119 99-219 (242)
5 4fdd_A Transportin-1; heat rep 79.3 13 0.00043 34.8 10.4 79 47-127 600-679 (852)
6 1ibr_B P95, importin beta-1 su 71.3 15 0.00052 30.6 7.9 88 34-124 365-457 (462)
7 4fdd_A Transportin-1; heat rep 70.4 19 0.00066 33.5 9.1 93 34-128 399-493 (852)
8 2bpt_A Importin beta-1 subunit 69.4 28 0.00097 31.7 9.9 93 36-130 640-735 (861)
9 1u6g_C TIP120 protein, CAND1; 68.5 22 0.00075 34.7 9.4 119 5-128 134-265 (1230)
10 2x19_B Importin-13; nuclear tr 63.8 97 0.0033 29.0 15.4 60 46-109 786-849 (963)
11 4db6_A Armadillo repeat protei 63.2 20 0.00069 26.7 6.5 76 29-106 6-83 (210)
12 4hxt_A De novo protein OR329; 62.7 40 0.0014 25.3 8.2 72 36-109 129-202 (252)
13 1qgr_A Protein (importin beta 60.7 35 0.0012 31.1 8.7 92 34-127 605-700 (876)
14 2vgl_A Adaptor protein complex 59.6 21 0.0007 32.9 7.0 103 20-127 130-237 (621)
15 4hxt_A De novo protein OR329; 59.6 44 0.0015 25.1 8.0 73 36-110 171-245 (252)
16 2bpt_A Importin beta-1 subunit 59.5 1E+02 0.0035 27.9 12.4 92 33-127 595-689 (861)
17 1ibr_B P95, importin beta-1 su 59.4 43 0.0015 27.7 8.5 117 5-126 129-267 (462)
18 4db6_A Armadillo repeat protei 59.3 45 0.0015 24.7 7.9 70 36-107 97-168 (210)
19 2x1g_F Cadmus; transport prote 58.8 76 0.0026 30.0 11.0 123 46-181 798-927 (971)
20 2vgl_B AP-2 complex subunit be 58.4 82 0.0028 28.3 10.7 85 21-110 106-193 (591)
21 4b8j_A Importin subunit alpha- 57.5 20 0.0007 31.1 6.3 104 6-110 119-236 (528)
22 4db8_A Armadillo-repeat protei 57.3 50 0.0017 25.2 8.0 87 21-109 116-212 (252)
23 1xc0_A Pardaxin P-4, PA4; BEND 56.4 5.6 0.00019 23.0 1.6 17 67-84 5-21 (33)
24 2jdq_A Importin alpha-1 subuni 53.8 55 0.0019 27.1 8.2 101 21-122 85-200 (450)
25 1w63_A Adapter-related protein 53.2 42 0.0014 30.6 7.9 101 21-128 127-233 (618)
26 2jdq_A Importin alpha-1 subuni 53.1 89 0.003 25.8 9.4 72 34-108 23-96 (450)
27 1u6g_C TIP120 protein, CAND1; 52.8 35 0.0012 33.3 7.6 121 5-127 49-184 (1230)
28 4db8_A Armadillo-repeat protei 51.8 25 0.00085 27.0 5.4 74 31-106 8-83 (252)
29 4b8j_A Importin subunit alpha- 47.3 45 0.0015 28.9 6.8 60 46-106 87-147 (528)
30 1xqr_A HSPBP1 protein; armadil 45.7 47 0.0016 27.7 6.5 66 43-109 90-157 (296)
31 1qgr_A Protein (importin beta 44.5 1.1E+02 0.0036 27.9 9.1 120 5-126 129-267 (876)
32 1wa5_C Importin alpha RE-expor 43.5 53 0.0018 31.3 7.2 76 48-129 473-559 (960)
33 2vgl_A Adaptor protein complex 41.4 54 0.0018 30.1 6.7 65 37-105 331-397 (621)
34 2vgl_B AP-2 complex subunit be 37.8 64 0.0022 29.0 6.5 112 3-123 389-510 (591)
35 1x5b_A Signal transducing adap 36.4 83 0.0029 24.1 6.1 64 30-94 47-113 (163)
36 1elk_A Target of MYB1; superhe 35.9 79 0.0027 24.0 5.9 57 29-86 47-108 (157)
37 1wa5_B Importin alpha subunit; 35.1 1.8E+02 0.0061 25.1 8.8 70 35-106 299-370 (530)
38 2of3_A ZYG-9; multifunctional 32.8 49 0.0017 27.7 4.5 74 33-110 165-240 (266)
39 1dvp_A HRS, hepatocyte growth 30.4 1.3E+02 0.0045 23.8 6.6 69 29-98 36-107 (220)
40 4ffb_C Protein STU2; tubulin f 29.7 54 0.0018 26.2 4.2 65 41-109 15-87 (278)
41 3d9j_A RNA-binding protein 16; 28.9 43 0.0015 25.2 3.3 48 16-63 20-72 (145)
42 1wa5_B Importin alpha subunit; 28.8 1.3E+02 0.0046 25.9 6.9 58 46-105 186-243 (530)
43 1pyo_B Caspase-2; apoptosis, c 28.3 29 0.001 24.8 2.1 26 1-26 35-61 (105)
44 3b2a_A TON_1937, putative unch 27.8 1E+02 0.0035 26.1 5.6 77 35-113 33-111 (265)
45 1vsy_5 Proteasome activator BL 27.7 67 0.0023 31.8 5.1 91 29-125 837-945 (997)
46 3or1_C Sulfite reductase GAMA; 26.2 18 0.00062 26.5 0.6 35 5-39 49-83 (105)
47 1loi_A Cyclic 3',5'-AMP specif 25.6 20 0.00067 19.7 0.5 12 9-20 3-14 (26)
48 1sz9_A PCF11 protein; RNA poly 24.9 95 0.0032 23.3 4.5 50 16-65 21-75 (144)
49 1jdh_A Beta-catenin; beta-cate 24.8 2.5E+02 0.0085 23.7 7.7 58 47-105 324-384 (529)
50 1b3u_A Protein (protein phosph 23.9 3E+02 0.01 23.3 8.1 99 22-125 224-331 (588)
51 1sc3_B Interleukin-1 beta conv 23.6 42 0.0014 23.3 2.1 26 1-26 29-55 (88)
52 1xqr_A HSPBP1 protein; armadil 23.5 1.6E+02 0.0053 24.4 6.0 69 39-109 171-241 (296)
53 4fu3_A Regulation of nuclear P 23.4 1.1E+02 0.0037 22.1 4.5 35 29-63 33-69 (135)
54 2ql9_B Caspase-7; cysteine pro 22.9 43 0.0015 23.4 2.1 26 1-26 31-57 (97)
55 1c1k_A BPT4 gene 59 helicase a 22.4 20 0.00068 29.7 0.2 47 26-75 48-94 (217)
56 1w63_A Adapter-related protein 22.1 4.1E+02 0.014 23.9 9.0 84 24-116 93-181 (618)
57 3zyq_A Hepatocyte growth facto 21.7 2.2E+02 0.0076 22.7 6.5 96 30-127 40-137 (226)
58 3opb_A SWI5-dependent HO expre 21.3 62 0.0021 31.4 3.4 85 23-113 158-248 (778)
No 1
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=91.47 E-value=0.69 Score=36.68 Aligned_cols=91 Identities=18% Similarity=0.195 Sum_probs=66.8
Q ss_pred CCchhHHHHHHhhccCCchHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhccccc
Q psy3040 31 PHDKFLFDRVAETLRSPSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPG 110 (189)
Q Consensus 31 ~~pk~l~~~ln~~~~~~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip~ 110 (189)
+-|..+++.+++ .+...|..++.-|+.++...|.....- -.. +++.|.+.+..|.+..+...|+.++..+......
T Consensus 15 ~l~~~l~~~l~s--~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~-i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~ 90 (242)
T 2qk2_A 15 KMPKDFYDKLEE--KKWTLRKESLEVLEKLLTDHPKLENGE-YGA-LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK 90 (242)
T ss_dssp GSCTTHHHHHTC--SSHHHHHHHHHHHHHHHHHCSSBCCCC-CHH-HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred cCCHHHHhhhcc--CCHHHHHHHHHHHHHHHccCCCCCCCC-HHH-HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh
Confidence 345567777653 355799999999999999866432111 134 7777777776699999999999999999877776
Q ss_pred chhhhHHHHHHHHHH
Q psy3040 111 LIGSHLTDIFEVFSR 125 (189)
Q Consensus 111 ~l~~~Lp~Lf~If~R 125 (189)
.+.+|.+.++.....
T Consensus 91 ~~~~~~~~ilp~ll~ 105 (242)
T 2qk2_A 91 RFSNYASACVPSLLE 105 (242)
T ss_dssp GGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 677777777666655
No 2
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=90.18 E-value=2 Score=35.09 Aligned_cols=113 Identities=12% Similarity=0.199 Sum_probs=81.2
Q ss_pred hhhHHHHHHhccCcH---HHHHHHHhhcC--------CCchhHHHHHHhhccC--CchHhhHHHHHHHHHhcCCCc---h
Q psy3040 5 LVNGLVDYFLASNSL---RAVDVLVIIRE--------PHDKFLFDRVAETLRS--PSTRLGALTLLGHIVQRQPTW---L 68 (189)
Q Consensus 5 l~~~lvdy~~~t~s~---~~~~iL~~~g~--------~~pk~l~~~ln~~~~~--~~~Rl~~L~LL~~~v~~qp~~---l 68 (189)
++..+++.+-+.... .+...|.++-+ ++...+++.+-+.+.. |..|.+++..++.++...+.. +
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l 184 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTL 184 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhH
Confidence 567777877554321 12333333333 2256788888888874 679999999999999988753 2
Q ss_pred hhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhcccccc-hhhhHHHH
Q psy3040 69 YKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGL-IGSHLTDI 119 (189)
Q Consensus 69 ~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip~~-l~~~Lp~L 119 (189)
-.-..-+ +++.+.+++ .|++..+=..|.-++..+.-.+... +.+++++|
T Consensus 185 ~~~l~~~-iip~l~~~l-~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 185 QRYLKDE-VVPIVIQIV-NDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHTTT-HHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHH-HHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 2222234 888888888 6899999999999999988888875 88888875
No 3
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=88.27 E-value=1.3 Score=36.24 Aligned_cols=90 Identities=11% Similarity=0.127 Sum_probs=63.0
Q ss_pred CCchhHHHHHHhhccCCchHhhHHHHHHH-HHhcCCCchhhhcc-ChhHHHHHHHHhccCccHHHHHHHHHHHHHHhccc
Q psy3040 31 PHDKFLFDRVAETLRSPSTRLGALTLLGH-IVQRQPTWLYKIMS-HPTLMKDLLKILKTESDMVEVISALLVLNILLPII 108 (189)
Q Consensus 31 ~~pk~l~~~ln~~~~~~~~Rl~~L~LL~~-~v~~qp~~l~~I~~-t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~i 108 (189)
+=|++|.+.+.. .+...|.+++.=|+. ++...|.-.....+ .. +++.|.+++..|.++.++..|+.++..+--..
T Consensus 16 kl~~~f~~~l~s--~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~-~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l 92 (249)
T 2qk1_A 16 KLPKDFQERITS--SKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSN-LLGIYGHIIQKDANIQAVALAAQSVELICDKL 92 (249)
T ss_dssp GSCTTHHHHHTC--SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHH-HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred hCChhHHHHhhc--CCHHHHHHHHHHHHHHHHhcCCccccCcccHHH-HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 556788888743 467899999999999 88765542221233 35 88899999989999999999998887765434
Q ss_pred -----c-cchhhhHHHHHHHH
Q psy3040 109 -----P-GLIGSHLTDIFEVF 123 (189)
Q Consensus 109 -----p-~~l~~~Lp~Lf~If 123 (189)
. ......||.+++.+
T Consensus 93 ~~~~f~~~y~~~llp~ll~~l 113 (249)
T 2qk1_A 93 KTPGFSKDYVSLVFTPLLDRT 113 (249)
T ss_dssp CTTTSCHHHHHHHHHHHHHGG
T ss_pred ccccccHHHHHHHHHHHHHHH
Confidence 3 44445555555443
No 4
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=87.49 E-value=2.2 Score=33.65 Aligned_cols=112 Identities=20% Similarity=0.245 Sum_probs=74.2
Q ss_pred hhhHHHHHHhccCcH---HHHHHHHhhcC-CCchhHHHHHHhhccC--CchHhhHHHHHHHHHhcCCCc-h-hhhccChh
Q psy3040 5 LVNGLVDYFLASNSL---RAVDVLVIIRE-PHDKFLFDRVAETLRS--PSTRLGALTLLGHIVQRQPTW-L-YKIMSHPT 76 (189)
Q Consensus 5 l~~~lvdy~~~t~s~---~~~~iL~~~g~-~~pk~l~~~ln~~~~~--~~~Rl~~L~LL~~~v~~qp~~-l-~~I~~t~~ 76 (189)
++..+++.+-+++.. .+.+.|.++.+ ...+.++..+-+.+.. |.-|..++..++.++.+..+. . ..-. ..
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l-~~- 176 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL-KL- 176 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH-HH-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH-HH-
Confidence 566666666554321 23333443333 3456778888888774 568999999999998876432 1 1111 24
Q ss_pred HHHHHHHHhccCccHHHHHHHHHHHHHHhcccccc-hhhhHHHH
Q psy3040 77 LMKDLLKILKTESDMVEVISALLVLNILLPIIPGL-IGSHLTDI 119 (189)
Q Consensus 77 L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip~~-l~~~Lp~L 119 (189)
+++.|.++| .|.+..+=..|..++..+.-.+... +.+++++|
T Consensus 177 l~p~l~~~l-~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 177 LTTSLVKTL-NEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp HHHHHHHHH-TSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred HHHHHHHHh-cCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 888888887 4888888888888888877777765 66777665
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=79.33 E-value=13 Score=34.81 Aligned_cols=79 Identities=10% Similarity=0.089 Sum_probs=62.7
Q ss_pred CchHhhHHHHHHHHHhcCCCchhhhc-cChhHHHHHHHHhccCccHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHH
Q psy3040 47 PSTRLGALTLLGHIVQRQPTWLYKIM-SHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEVFSR 125 (189)
Q Consensus 47 ~~~Rl~~L~LL~~~v~~qp~~l~~I~-~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip~~l~~~Lp~Lf~If~R 125 (189)
.+.|..++.+++.+++.-+...-... +.. +++-+++|+. |.+..+-..|..++..+.-.++..+.+|++.++.++.+
T Consensus 600 ~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~-~~~~l~~~l~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~ 677 (852)
T 4fdd_A 600 KDFMIVALDLLSGLAEGLGGNIEQLVARSN-ILTLMYQCMQ-DKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGT 677 (852)
T ss_dssp THHHHHHHHHHHHHHHHHGGGGHHHHHTCC-HHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhHhHHHHhcCCc-HHHHHHHHhC-CCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34688899999999988776655444 567 9999999985 44566777888888888777888899999999988887
Q ss_pred Hh
Q psy3040 126 LA 127 (189)
Q Consensus 126 l~ 127 (189)
..
T Consensus 678 ~l 679 (852)
T 4fdd_A 678 NL 679 (852)
T ss_dssp TC
T ss_pred Hc
Confidence 65
No 6
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=71.27 E-value=15 Score=30.60 Aligned_cols=88 Identities=16% Similarity=0.284 Sum_probs=59.9
Q ss_pred hhHHHHHHhhccCC--chHhhHHHHHHHHHhcCCCc-hhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhccccc
Q psy3040 34 KFLFDRVAETLRSP--STRLGALTLLGHIVQRQPTW-LYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPG 110 (189)
Q Consensus 34 k~l~~~ln~~~~~~--~~Rl~~L~LL~~~v~~qp~~-l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip~ 110 (189)
..++..+.+.+..+ ..|..++..+|.+...-.+. +.... .. +++.++++|. |.+..+-..|..+|..+.-.++.
T Consensus 365 ~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~-~~~~l~~~l~-d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQ-AMPTLIELMK-DPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TT-HHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HH-HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhccc
Confidence 34566666777654 47899999999997643311 21111 34 8888888875 77888888888888887777666
Q ss_pred ch--hhhHHHHHHHHH
Q psy3040 111 LI--GSHLTDIFEVFS 124 (189)
Q Consensus 111 ~l--~~~Lp~Lf~If~ 124 (189)
.+ .++++.++....
T Consensus 442 ~~~~~~~l~~ll~~Ll 457 (462)
T 1ibr_B 442 AAINDVYLAPLLQCLI 457 (462)
T ss_dssp GCCSTTTHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH
Confidence 54 467777766544
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=70.42 E-value=19 Score=33.53 Aligned_cols=93 Identities=16% Similarity=0.045 Sum_probs=61.9
Q ss_pred hhHHHHHHhhccCCc--hHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhcccccc
Q psy3040 34 KFLFDRVAETLRSPS--TRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGL 111 (189)
Q Consensus 34 k~l~~~ln~~~~~~~--~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip~~ 111 (189)
..++..+-+.+..++ -|-.+...+|.+...-+.......-.+ +++.++++|+ |.+..+-..|..++..+.......
T Consensus 399 ~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~-ll~~L~~~L~-d~~~~vr~~a~~aL~~l~~~~~~~ 476 (852)
T 4fdd_A 399 PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKP-LMTELLKRIL-DSNKRVQEAACSAFATLEEEACTE 476 (852)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHH-HHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHH-HHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhhHh
Confidence 345555566666554 566667777766442211111112235 7777787775 668888888999999888888888
Q ss_pred hhhhHHHHHHHHHHHhc
Q psy3040 112 IGSHLTDIFEVFSRLAA 128 (189)
Q Consensus 112 l~~~Lp~Lf~If~Rl~~ 128 (189)
+.+|+++++..+..+..
T Consensus 477 l~~~l~~ll~~L~~~l~ 493 (852)
T 4fdd_A 477 LVPYLAYILDTLVFAFS 493 (852)
T ss_dssp GGGGHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHH
Confidence 88899999888877653
No 8
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=69.37 E-value=28 Score=31.68 Aligned_cols=93 Identities=12% Similarity=0.092 Sum_probs=66.0
Q ss_pred HHHHHHhhcc--CCchHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccC-ccHHHHHHHHHHHHHHhcccccch
Q psy3040 36 LFDRVAETLR--SPSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTE-SDMVEVISALLVLNILLPIIPGLI 112 (189)
Q Consensus 36 l~~~ln~~~~--~~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D-~s~~vv~~al~~LimLLP~ip~~l 112 (189)
++..+-+.+. .++.|..++.+++.+++.-+...-... .. +++.+++++..+ .+..+-..++.++-.+.-.++..+
T Consensus 640 i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~-l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~ 717 (861)
T 2bpt_A 640 FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS-DA-MMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADF 717 (861)
T ss_dssp HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH-HH-HHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH-HH-HHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhH
Confidence 3444444443 456799999999999887654322111 34 777777887754 346677778888887877888889
Q ss_pred hhhHHHHHHHHHHHhccc
Q psy3040 113 GSHLTDIFEVFSRLAAWN 130 (189)
Q Consensus 113 ~~~Lp~Lf~If~Rl~~W~ 130 (189)
.+|++.++....+...+.
T Consensus 718 ~~~l~~~l~~l~~~~~~~ 735 (861)
T 2bpt_A 718 IPYLNDIMALCVAAQNTK 735 (861)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999888764
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=68.48 E-value=22 Score=34.68 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=75.7
Q ss_pred hhhHHHHHHhccCc----HHHHHHHHhh----cC---CCchhHHHHHHhhccCC--chHhhHHHHHHHHHhcCCCchhhh
Q psy3040 5 LVNGLVDYFLASNS----LRAVDVLVII----RE---PHDKFLFDRVAETLRSP--STRLGALTLLGHIVQRQPTWLYKI 71 (189)
Q Consensus 5 l~~~lvdy~~~t~s----~~~~~iL~~~----g~---~~pk~l~~~ln~~~~~~--~~Rl~~L~LL~~~v~~qp~~l~~I 71 (189)
++..|++..-++.+ ..+.++|.+. |+ ++-..++..+-+.+..+ .-|..|+.-++.++..-+...
T Consensus 134 llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~--- 210 (1230)
T 1u6g_C 134 ITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV--- 210 (1230)
T ss_dssp HHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH---
Confidence 56666666542222 2344455443 32 34456677777777764 478889999999987665432
Q ss_pred ccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHhc
Q psy3040 72 MSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEVFSRLAA 128 (189)
Q Consensus 72 ~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip~~l~~~Lp~Lf~If~Rl~~ 128 (189)
-.. +++.++..|..+.+..+...|+-++..+...++..+.+|+++++..+.+...
T Consensus 211 -~~~-~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~ 265 (1230)
T 1u6g_C 211 -FVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN 265 (1230)
T ss_dssp -CTT-HHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHS
T ss_pred -HHH-HHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 235 7888888887765533444455566666666677788899999988888764
No 10
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=63.84 E-value=97 Score=29.04 Aligned_cols=60 Identities=18% Similarity=0.229 Sum_probs=46.1
Q ss_pred CCchHhhHHHHHHHHHhcCCCchhhhccCh----hHHHHHHHHhccCccHHHHHHHHHHHHHHhcccc
Q psy3040 46 SPSTRLGALTLLGHIVQRQPTWLYKIMSHP----TLMKDLLKILKTESDMVEVISALLVLNILLPIIP 109 (189)
Q Consensus 46 ~~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~----~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip 109 (189)
.|+.|...+.|++.+++..|..+. +++ .+++.++.+|+ ..+..++.+|+.++..++-...
T Consensus 786 ~pd~~~~~f~ll~~~~~~~~~~~~---~~~~~~~~i~~~~~~~l~-~~~~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 786 HPDIVDSFMQLLAQALKRKPDLFL---CERLDVKAVFQCAVLALK-FPEAPTVKASCGFFTELLPRCG 849 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGG---CTTSCHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHGGGTT
T ss_pred CchHHHHHHHHHHHHHHhCcHHHc---CCcccHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHhcCC
Confidence 589999999999999999997763 234 14445555566 6888899999999999886543
No 11
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=63.21 E-value=20 Score=26.71 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=54.2
Q ss_pred cCCCchhHHHHHHhhccC--CchHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhc
Q psy3040 29 REPHDKFLFDRVAETLRS--PSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLP 106 (189)
Q Consensus 29 g~~~pk~l~~~ln~~~~~--~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP 106 (189)
+...+......+-..+.. ++-|..|+..|+.+....+.....+.+.. .++.|+++|+.+ +..+...|+.+|..+--
T Consensus 6 ~~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g-~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~ 83 (210)
T 4db6_A 6 HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAG-ALPALVQLLSSP-NEQILQEALWALSNIAS 83 (210)
T ss_dssp -------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT-HHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred ccccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC-CHHHHHHHHcCC-CHHHHHHHHHHHHHHhc
Confidence 334444455555555554 45788999999999888888888999999 999999999865 67777788877777653
No 12
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=62.65 E-value=40 Score=25.33 Aligned_cols=72 Identities=17% Similarity=0.075 Sum_probs=56.4
Q ss_pred HHHHHHhhccC--CchHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhcccc
Q psy3040 36 LFDRVAETLRS--PSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIP 109 (189)
Q Consensus 36 l~~~ln~~~~~--~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip 109 (189)
....+-+.+.. +.-|..++..|+.+....+.....+.+.. .++.|++.|. +.+..+...|+.+|..+.-.-+
T Consensus 129 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~ 202 (252)
T 4hxt_A 129 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG-GVEVLVKLLT-STDSEVQKEAARALANIASGPT 202 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-HHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSBH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCc-CHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCCH
Confidence 45556666665 45789999999999887777778899999 9999999998 5667788888888887765433
No 13
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=60.67 E-value=35 Score=31.13 Aligned_cols=92 Identities=13% Similarity=0.096 Sum_probs=62.1
Q ss_pred hhHHHHHHhhccCC----chHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhcccc
Q psy3040 34 KFLFDRVAETLRSP----STRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIP 109 (189)
Q Consensus 34 k~l~~~ln~~~~~~----~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip 109 (189)
..++..+-+.+..+ ..|..++.+++.++..-+....... .. +++-++++|....+..+...|+.++..+.-.+.
T Consensus 605 ~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~-~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 682 (876)
T 1qgr_A 605 DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM-EA-FKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ 682 (876)
T ss_dssp HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH-HH-HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHH-HH-HHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH
Confidence 44555665666554 4688999999999886443322222 23 677777887755466777778888877777777
Q ss_pred cchhhhHHHHHHHHHHHh
Q psy3040 110 GLIGSHLTDIFEVFSRLA 127 (189)
Q Consensus 110 ~~l~~~Lp~Lf~If~Rl~ 127 (189)
..+.+++++++.......
T Consensus 683 ~~~~~~~~~i~~~l~~~l 700 (876)
T 1qgr_A 683 SNIIPFCDEVMQLLLENL 700 (876)
T ss_dssp GGGHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHh
Confidence 778889999998887754
No 14
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=59.59 E-value=21 Score=32.92 Aligned_cols=103 Identities=13% Similarity=0.149 Sum_probs=72.7
Q ss_pred HHHHHHHhhcCCC-chhHHHHHHhhc--c--CCchHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHH
Q psy3040 20 RAVDVLVIIREPH-DKFLFDRVAETL--R--SPSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEV 94 (189)
Q Consensus 20 ~~~~iL~~~g~~~-pk~l~~~ln~~~--~--~~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv 94 (189)
.|...|.+.+.+. -..+...+-+++ . +|--|-.|..-+.++.+..|.-+. ... +++.+.++| .|.|..|+
T Consensus 130 lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~-~~~~l~~lL-~d~d~~V~ 204 (621)
T 2vgl_A 130 LALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGD-WTSRVVHLL-NDQHLGVV 204 (621)
T ss_dssp HHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCS-CHHHHHHHT-TCSCHHHH
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chh-HHHHHHHHh-CCCCccHH
Confidence 3566666665532 122334444555 3 345677888888888887775442 135 777777776 69999999
Q ss_pred HHHHHHHHHHhcccccchhhhHHHHHHHHHHHh
Q psy3040 95 ISALLVLNILLPIIPGLIGSHLTDIFEVFSRLA 127 (189)
Q Consensus 95 ~~al~~LimLLP~ip~~l~~~Lp~Lf~If~Rl~ 127 (189)
.+|+.++.-+-+.-|....+..|.++.++.++.
T Consensus 205 ~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll 237 (621)
T 2vgl_A 205 TAATSLITTLAQKNPEEFKTSVSLAVSRLSRIV 237 (621)
T ss_dssp HHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 999999999988888777788888888888774
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=59.57 E-value=44 Score=25.10 Aligned_cols=73 Identities=16% Similarity=0.016 Sum_probs=56.3
Q ss_pred HHHHHHhhccCC--chHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhccccc
Q psy3040 36 LFDRVAETLRSP--STRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPG 110 (189)
Q Consensus 36 l~~~ln~~~~~~--~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip~ 110 (189)
....+-+.+..+ .-|..++..|+.+....+.....+.+.. .++.|++.++ +.+..+-..|+.+|..+-..-+.
T Consensus 171 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~-~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 171 GVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAG-GVEVLQKLLT-STDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTT-HHHHHHHGGG-CSCHHHHHHHHHHHHHHHHTCBC
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC-CHHHHHHHHC-CCcHHHHHHHHHHHHHHHcCCCc
Confidence 455666666654 5788999999999887788888888999 9999999887 55667788888888777655443
No 16
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=59.48 E-value=1e+02 Score=27.92 Aligned_cols=92 Identities=13% Similarity=0.090 Sum_probs=61.9
Q ss_pred chhHHHHHHhhccCC---chHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhcccc
Q psy3040 33 DKFLFDRVAETLRSP---STRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIP 109 (189)
Q Consensus 33 pk~l~~~ln~~~~~~---~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip 109 (189)
-..++..+-+.+..+ .-|-.++..++.++..-+....... +.+++.+++++. +.+..+...|+.++..+.-.+.
T Consensus 595 ~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~-~~~~~vr~~a~~~l~~l~~~~~ 671 (861)
T 2bpt_A 595 ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALN-QVDSPVSITAVGFIADISNSLE 671 (861)
T ss_dssp HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHH-CTTSHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhc
Confidence 344555555556554 4588889999988876554332211 227777888884 5555566777777777777777
Q ss_pred cchhhhHHHHHHHHHHHh
Q psy3040 110 GLIGSHLTDIFEVFSRLA 127 (189)
Q Consensus 110 ~~l~~~Lp~Lf~If~Rl~ 127 (189)
..+.+++++++....+..
T Consensus 672 ~~~~~~~~~l~~~l~~~l 689 (861)
T 2bpt_A 672 EDFRRYSDAMMNVLAQMI 689 (861)
T ss_dssp GGGHHHHHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHh
Confidence 778889999988877654
No 17
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=59.36 E-value=43 Score=27.74 Aligned_cols=117 Identities=12% Similarity=0.149 Sum_probs=71.4
Q ss_pred hhhHHHHHHhccC-cH----HHHHHHHhhcC--------CCchhHHHHHHhhccCC----chHhhHHHHHHHHHhcCCCc
Q psy3040 5 LVNGLVDYFLASN-SL----RAVDVLVIIRE--------PHDKFLFDRVAETLRSP----STRLGALTLLGHIVQRQPTW 67 (189)
Q Consensus 5 l~~~lvdy~~~t~-s~----~~~~iL~~~g~--------~~pk~l~~~ln~~~~~~----~~Rl~~L~LL~~~v~~qp~~ 67 (189)
++..+++..-+.. +. .+..+|....+ ++-..++..+...+..+ .-|..|+.-++.++..
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~---- 204 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF---- 204 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT----
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH----
Confidence 7777777765541 32 23444444332 23345677777777765 3588888888886531
Q ss_pred hhhhcc----ChhHHHHHHHHhccCccHHHHHHHHHHHHHHhcccccchhhhHH-HHHHHHHHH
Q psy3040 68 LYKIMS----HPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLT-DIFEVFSRL 126 (189)
Q Consensus 68 l~~I~~----t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip~~l~~~Lp-~Lf~If~Rl 126 (189)
...-.+ .+ .+-..+.-+..|.+..+-..++-++..+....+..+.++++ +++..+...
T Consensus 205 ~~~~~~~~~~~~-~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~ 267 (462)
T 1ibr_B 205 TKANFDKESERH-FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA 267 (462)
T ss_dssp THHHHTSHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHH
T ss_pred HHHhhhhhHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 12 22223333446778888888999999999888887888888 777766543
No 18
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=59.34 E-value=45 Score=24.68 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=55.0
Q ss_pred HHHHHHhhccCC--chHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhcc
Q psy3040 36 LFDRVAETLRSP--STRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPI 107 (189)
Q Consensus 36 l~~~ln~~~~~~--~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ 107 (189)
....+-+.+..+ .-|..+...|+.+....+.....+.+.. .++.|++.|+.+ +..+...|+.+|..+.-.
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG-ALPALVQLLSSP-NEQILQEALWALSNIASG 168 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-HHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcC-cHHHHHHHHcCC-CHHHHHHHHHHHHHHHcC
Confidence 345555556554 5678999999999888888888899999 999999999864 777888888888877654
No 19
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=58.84 E-value=76 Score=29.96 Aligned_cols=123 Identities=11% Similarity=0.045 Sum_probs=64.7
Q ss_pred CCchHhhHHHHHHHHHhcCCCchhhhccChhH-HHH----HHHHhccCccHHHHHHHHHHHHHHhccc--ccchhhhHHH
Q psy3040 46 SPSTRLGALTLLGHIVQRQPTWLYKIMSHPTL-MKD----LLKILKTESDMVEVISALLVLNILLPII--PGLIGSHLTD 118 (189)
Q Consensus 46 ~~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L-~~~----LLkcL~~D~s~~vv~~al~~LimLLP~i--p~~l~~~Lp~ 118 (189)
.|+.|-..+.|++.++++.|..+.. ++ + ++. .+.+|+.+. ..+..+|+.++..++-.- ...+.+++..
T Consensus 798 ~pd~~~~~f~ll~~~l~~~p~~~~~---s~-~~l~~i~~~~~~~l~~~~-~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~ 872 (971)
T 2x1g_F 798 ISDTMETFFGCLTQIIKKIPQVLED---KT-LAYDRLVFYAQRGMTLPE-SGAIRNSIQFLTHFVMQSRNHAHVTEVVLA 872 (971)
T ss_dssp THHHHHHHHHHHHHHHHSSGGGGGC---TT-SCHHHHHHHHHHHHTSSC-SSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhCcHHHcC---Cc-ccHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 6788899999999999999986643 34 5 444 455555433 333444555555544331 1112222222
Q ss_pred HHHHHHHHhcccccCCCCCCccchhhhHHhHHHHHHHHHhcccchHHHHHHHHHhhhccCCcc
Q psy3040 119 IFEVFSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMRCDNVNA 181 (189)
Q Consensus 119 Lf~If~Rl~~W~~~~~~~~~e~~l~hl~~~~~~lFt~LYGlyP~NFl~fLR~~y~~k~~~~~~ 181 (189)
......+.+.-... +..|..-+. .+....-.|+..||-.+..||++-.. . +++|+
T Consensus 873 ~g~~l~~~l~~~~~--~~~~~s~~~----~~a~~l~~l~~~~~~~~~~~l~~~l~-~-~~~p~ 927 (971)
T 2x1g_F 873 TGEQTLYTAMMCVG--YLTPRSQVD----KFADILLAMNRKYAAEMAVWMKSLMS-T-PNFPT 927 (971)
T ss_dssp HHHHHHHHHHHHHH--TTSCGGGGG----GGHHHHHHHHHHHHHHHHHHHHHHHT-S-SSCSC
T ss_pred hHHHHHHHHHHHhc--ccCChhHHH----HHHHHHHHHHHHCcHHHHHHHHHHhc-c-cCCCC
Confidence 22222222111111 223322222 23355666777788888888887664 3 55554
No 20
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=58.43 E-value=82 Score=28.27 Aligned_cols=85 Identities=18% Similarity=0.265 Sum_probs=57.4
Q ss_pred HHHHHHhhcCCCc-hhHHHHHHhhccC--CchHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHH
Q psy3040 21 AVDVLVIIREPHD-KFLFDRVAETLRS--PSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISA 97 (189)
Q Consensus 21 ~~~iL~~~g~~~p-k~l~~~ln~~~~~--~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~a 97 (189)
|...|.+.+.+.- ..+...+-+++.. |.-|-.|..-++.+.+..|.-+.. .. +++.+.++| .|.+..|...|
T Consensus 106 AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~---~~-~~~~l~~lL-~d~d~~V~~~A 180 (591)
T 2vgl_B 106 AVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED---QG-FLDSLRDLI-ADSNPMVVANA 180 (591)
T ss_dssp HHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH---HH-HHHHHHHTT-SCSCHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc---cc-HHHHHHHHh-CCCChhHHHHH
Confidence 3445555553321 2233346666664 457888999999998877764322 34 666666666 49999999999
Q ss_pred HHHHHHHhccccc
Q psy3040 98 LLVLNILLPIIPG 110 (189)
Q Consensus 98 l~~LimLLP~ip~ 110 (189)
+.+|.-+-+.-|.
T Consensus 181 ~~aL~~i~~~~~~ 193 (591)
T 2vgl_B 181 VAALSEISESHPN 193 (591)
T ss_dssp HHHHHHHTTSCCS
T ss_pred HHHHHHHHhhCCC
Confidence 9999999887663
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=57.46 E-value=20 Score=31.11 Aligned_cols=104 Identities=17% Similarity=0.139 Sum_probs=71.1
Q ss_pred hhHHHHHHhccCcH----HHHHHHHhhcCCCch--------hHHHHHHhhcc--CCchHhhHHHHHHHHHhcCCCchhhh
Q psy3040 6 VNGLVDYFLASNSL----RAVDVLVIIREPHDK--------FLFDRVAETLR--SPSTRLGALTLLGHIVQRQPTWLYKI 71 (189)
Q Consensus 6 ~~~lvdy~~~t~s~----~~~~iL~~~g~~~pk--------~l~~~ln~~~~--~~~~Rl~~L~LL~~~v~~qp~~l~~I 71 (189)
+..|++..-+.++. .+..+|.+.....+. .....+-+.+. .++-|..|+..|+.+....|..-..+
T Consensus 119 v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i 198 (528)
T 4b8j_A 119 VPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLV 198 (528)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 44555554333322 344566666654332 13333444444 34578899999999988777777788
Q ss_pred ccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhccccc
Q psy3040 72 MSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPG 110 (189)
Q Consensus 72 ~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip~ 110 (189)
.+.. .++.|++.|..+.+..+...|+.+|..|--.-|.
T Consensus 199 ~~~g-~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~ 236 (528)
T 4b8j_A 199 LANG-ALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ 236 (528)
T ss_dssp HHTT-CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSC
T ss_pred HHCC-cHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCC
Confidence 8888 9999999998888999999998888888765443
No 22
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=57.26 E-value=50 Score=25.15 Aligned_cols=87 Identities=17% Similarity=0.134 Sum_probs=63.2
Q ss_pred HHHHHHhhcCCCchh--------HHHHHHhhccCC--chHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCcc
Q psy3040 21 AVDVLVIIREPHDKF--------LFDRVAETLRSP--STRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESD 90 (189)
Q Consensus 21 ~~~iL~~~g~~~pk~--------l~~~ln~~~~~~--~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s 90 (189)
+..+|.+.....+.. ....+-+.+..+ .-|..++..|+.+....+.....+.+.. .++.|++.|.. .+
T Consensus 116 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~ll~~-~~ 193 (252)
T 4db8_A 116 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG-ALPALVQLLSS-PN 193 (252)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-CHHHHHHGGGC-SS
T ss_pred HHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHCC-CC
Confidence 344555555544433 455666666654 4688999999999887777778888888 99999998875 47
Q ss_pred HHHHHHHHHHHHHHhcccc
Q psy3040 91 MVEVISALLVLNILLPIIP 109 (189)
Q Consensus 91 ~~vv~~al~~LimLLP~ip 109 (189)
..+...|+.+|.-+.-.-+
T Consensus 194 ~~v~~~a~~~L~~l~~~~~ 212 (252)
T 4db8_A 194 EQILQEALWALSNIASGGN 212 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHhcCCH
Confidence 7888888888888774433
No 23
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=56.38 E-value=5.6 Score=23.03 Aligned_cols=17 Identities=47% Similarity=0.675 Sum_probs=14.3
Q ss_pred chhhhccChhHHHHHHHH
Q psy3040 67 WLYKIMSHPTLMKDLLKI 84 (189)
Q Consensus 67 ~l~~I~~t~~L~~~LLkc 84 (189)
-++||+++| ||+++|..
T Consensus 5 lipkiissp-lfktllsa 21 (33)
T 1xc0_A 5 LIPKIISSP-LFKTLLSA 21 (33)
T ss_dssp SHHHHTTTT-THHHHHHH
T ss_pred hhhHHHccH-HHHHHHHH
Confidence 368999999 99999864
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=53.77 E-value=55 Score=27.11 Aligned_cols=101 Identities=17% Similarity=0.119 Sum_probs=70.3
Q ss_pred HHHHHHhhcCCCc--------hhHHHHHHhhccC--CchHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCcc
Q psy3040 21 AVDVLVIIREPHD--------KFLFDRVAETLRS--PSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESD 90 (189)
Q Consensus 21 ~~~iL~~~g~~~p--------k~l~~~ln~~~~~--~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s 90 (189)
+..+|.+.....+ ......+-+.+.. +.-|..|+..|+.+....+.....+.+.. .++.+++.|+.|.+
T Consensus 85 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~~l~~~~~ 163 (450)
T 2jdq_A 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCN-ILPPLLQLFSKQNR 163 (450)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-CHHHHHHHTTSCCC
T ss_pred HHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCC-CHHHHHHHhcCCCC
Confidence 4456665554322 2345555566665 45789999999999887766677788888 99999999998788
Q ss_pred HHHHHHHHHHHHHHh----cccccc-hhhhHHHHHHH
Q psy3040 91 MVEVISALLVLNILL----PIIPGL-IGSHLTDIFEV 122 (189)
Q Consensus 91 ~~vv~~al~~LimLL----P~ip~~-l~~~Lp~Lf~I 122 (189)
..+...|+.+|..+. |..... ....+|.|...
T Consensus 164 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~ 200 (450)
T 2jdq_A 164 LTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200 (450)
T ss_dssp HHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 888889988888887 332211 34555655544
No 25
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=53.17 E-value=42 Score=30.58 Aligned_cols=101 Identities=14% Similarity=0.171 Sum_probs=66.4
Q ss_pred HHHHHHhhcCCCc-hhHHHHHHhhccC--CchHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHH
Q psy3040 21 AVDVLVIIREPHD-KFLFDRVAETLRS--PSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISA 97 (189)
Q Consensus 21 ~~~iL~~~g~~~p-k~l~~~ln~~~~~--~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~a 97 (189)
|...|.+.+.+.- ..+...+-+++.+ |.-|-.|..-++.+.+..|.-+. . +++.+.+ +..|.|..|+..|
T Consensus 127 AL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~-~~~~l~~-lL~D~d~~V~~~A 199 (618)
T 1w63_A 127 ALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----M-FLPATKN-LLNEKNHGVLHTS 199 (618)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----G-GGGGTTT-STTCCCHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----H-HHHHHHH-HhCCCCHhHHHHH
Confidence 5566666664311 1225555555554 55788888888999888775432 3 4433333 3469999999999
Q ss_pred HHHHHHHhccccc---chhhhHHHHHHHHHHHhc
Q psy3040 98 LLVLNILLPIIPG---LIGSHLTDIFEVFSRLAA 128 (189)
Q Consensus 98 l~~LimLLP~ip~---~l~~~Lp~Lf~If~Rl~~ 128 (189)
+.++..+.+.-|. ...+..|.++.+..++..
T Consensus 200 l~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~ 233 (618)
T 1w63_A 200 VVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIM 233 (618)
T ss_dssp HHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999877654 355667778877766543
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=53.05 E-value=89 Score=25.81 Aligned_cols=72 Identities=13% Similarity=0.203 Sum_probs=52.5
Q ss_pred hhHHHHHHhhccCCchHhhHHHHHHHHHhc-CCCchhhhccC-hhHHHHHHHHhccCccHHHHHHHHHHHHHHhccc
Q psy3040 34 KFLFDRVAETLRSPSTRLGALTLLGHIVQR-QPTWLYKIMSH-PTLMKDLLKILKTESDMVEVISALLVLNILLPII 108 (189)
Q Consensus 34 k~l~~~ln~~~~~~~~Rl~~L~LL~~~v~~-qp~~l~~I~~t-~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~i 108 (189)
..+++.++. ..+..|..|+..|..++.. ..+....+.+. . +++.|+++|+.+.+..+-..|+.+|..+...-
T Consensus 23 ~~l~~~l~s--~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~-~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~ 96 (450)
T 2jdq_A 23 SDMIEMIFS--KSPEQQLSATQKFRKLLSKEPNPPIDEVISTPG-VVARFVEFLKRKENCTLQFESAWVLTNIASGN 96 (450)
T ss_dssp HHHHHHHHS--SCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTT-HHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCC-cHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence 345555542 2456899999999998872 33344666676 8 99999999998877888888888887776543
No 27
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=52.80 E-value=35 Score=33.25 Aligned_cols=121 Identities=14% Similarity=0.110 Sum_probs=77.4
Q ss_pred hhhHHHHHHhccCcH----HHHHHHHhhcCCCc----hhHHHHHHhhccCCc--hHhhHHHHHHHHHhcCCCch-----h
Q psy3040 5 LVNGLVDYFLASNSL----RAVDVLVIIREPHD----KFLFDRVAETLRSPS--TRLGALTLLGHIVQRQPTWL-----Y 69 (189)
Q Consensus 5 l~~~lvdy~~~t~s~----~~~~iL~~~g~~~p----k~l~~~ln~~~~~~~--~Rl~~L~LL~~~v~~qp~~l-----~ 69 (189)
++..++++--+ .+. .+...|....+.-+ ..++..+-+.+..++ .|..+...++.++..-++.. -
T Consensus 49 il~~Ll~~L~d-~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~ 127 (1230)
T 1u6g_C 49 VVKMILKLLED-KNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 127 (1230)
T ss_dssp HHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTH
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchH
Confidence 45555555432 222 23344444444333 345556666666544 58889999999987655431 0
Q ss_pred hhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHh
Q psy3040 70 KIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEVFSRLA 127 (189)
Q Consensus 70 ~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip~~l~~~Lp~Lf~If~Rl~ 127 (189)
.-.... +++.|++++.-+.+..+...|+.++..++...+..+.+++++++..+....
T Consensus 128 ~~~~~~-llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L 184 (1230)
T 1u6g_C 128 ANVCKK-ITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQL 184 (1230)
T ss_dssp HHHHHH-HHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGG
T ss_pred HHHHHH-HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 111224 888888888755678889999999999997777778888888888877654
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=51.84 E-value=25 Score=26.96 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=53.9
Q ss_pred CCchhHHHHHHhhcc--CCchHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhc
Q psy3040 31 PHDKFLFDRVAETLR--SPSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLP 106 (189)
Q Consensus 31 ~~pk~l~~~ln~~~~--~~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP 106 (189)
..++..++.+-+.+. +++.|..|..-|..++...+.....+.+.. .++.|++.|+.+. ..+...|+.+|..+--
T Consensus 8 ~~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g-~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~ 83 (252)
T 4db8_A 8 HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAG-ALPALVQLLSSPN-EQILQEALWALSNIAS 83 (252)
T ss_dssp CCTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHGGGCSC-HHHHHHHHHHHHHHTT
T ss_pred ccccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcC-cHHHHHHHHcCCC-HHHHHHHHHHHHHHhc
Confidence 344444555555555 456899999999888887777777899999 9999999998654 6666677666666554
No 29
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=47.34 E-value=45 Score=28.91 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=48.9
Q ss_pred CCchHhhHHHHHHHHHhcCC-CchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhc
Q psy3040 46 SPSTRLGALTLLGHIVQRQP-TWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLP 106 (189)
Q Consensus 46 ~~~~Rl~~L~LL~~~v~~qp-~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP 106 (189)
.++.|..|+..|+.++...+ +....+.+.. .++.|+++|..+.+..+-..|+.+|..+--
T Consensus 87 ~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g-~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~ 147 (528)
T 4b8j_A 87 DNNLQLEATTQFRKLLSIERSPPIEEVIQSG-VVPRFVQFLTREDFPQLQFEAAWALTNIAS 147 (528)
T ss_dssp CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTT-CHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhcCCCCchHHHHHHCC-CHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence 45689999999999998876 7788899999 999999999887656666666666665554
No 30
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=45.71 E-value=47 Score=27.73 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=54.9
Q ss_pred hccC--CchHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhcccc
Q psy3040 43 TLRS--PSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIP 109 (189)
Q Consensus 43 ~~~~--~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip 109 (189)
.+.. +.-|-+|...+|.+++..|..--.+++.. .++.|+++|+.|.+..+...|+.+|.-+.=.-+
T Consensus 90 lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g-~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~ 157 (296)
T 1xqr_A 90 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLG-ALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157 (296)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCC-CHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc
Confidence 4454 44688899999999998888878899999 999999999988888888999999888774433
No 31
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=44.55 E-value=1.1e+02 Score=27.92 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=73.2
Q ss_pred hhhHHHHHHhccC-cH----HHHHHHHhhcC--------CCchhHHHHHHhhccCC----chHhhHHHHHHHHHhcCCCc
Q psy3040 5 LVNGLVDYFLASN-SL----RAVDVLVIIRE--------PHDKFLFDRVAETLRSP----STRLGALTLLGHIVQRQPTW 67 (189)
Q Consensus 5 l~~~lvdy~~~t~-s~----~~~~iL~~~g~--------~~pk~l~~~ln~~~~~~----~~Rl~~L~LL~~~v~~qp~~ 67 (189)
++..++.+.-+.+ +. .+.++|...-+ ++-..++..+.+.+..+ .-|..++.-++.++..-+..
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~ 208 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN 208 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6667776654441 32 23444443322 33355666677777765 46889999999887532211
Q ss_pred hh-hhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhcccccchhhhHH-HHHHHHHHH
Q psy3040 68 LY-KIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLT-DIFEVFSRL 126 (189)
Q Consensus 68 l~-~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip~~l~~~Lp-~Lf~If~Rl 126 (189)
.. ...... +++.+...+ .|.+..+-..|+-++..+.-..+..+.++++ .++......
T Consensus 209 ~~~~~~~~~-il~~l~~~~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~ 267 (876)
T 1qgr_A 209 FDKESERHF-IMQVVCEAT-QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA 267 (876)
T ss_dssp HTSHHHHHH-HHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHH
T ss_pred HHhHHHHHH-HHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 11 001112 445455444 4667778888899999998888888888888 888776653
No 32
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=43.47 E-value=53 Score=31.29 Aligned_cols=76 Identities=18% Similarity=0.123 Sum_probs=55.4
Q ss_pred chHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhccc-----------ccchhhhH
Q psy3040 48 STRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPII-----------PGLIGSHL 116 (189)
Q Consensus 48 ~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~i-----------p~~l~~~L 116 (189)
-=|-.|+-.+|.+.. |+.+-.-.+ +++.++++|. |.+..|-..|..++-.++-+. +..+.+|+
T Consensus 473 ~vr~~a~~~lg~~~~----~~~~~~l~~-~l~~l~~~L~-d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l 546 (960)
T 1wa5_C 473 ILRVDAIKYIYTFRN----QLTKAQLIE-LMPILATFLQ-TDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST 546 (960)
T ss_dssp HHHHHHHHHHHHTGG----GSCHHHHHH-HHHHHHHHTT-CSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH
T ss_pred eehHHHHHHHHHHHh----hCCHHHHHH-HHHHHHHHhC-CCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhH
Confidence 358889999998843 333222233 7788888886 678888899999999988642 35588999
Q ss_pred HHHHHHHHHHhcc
Q psy3040 117 TDIFEVFSRLAAW 129 (189)
Q Consensus 117 p~Lf~If~Rl~~W 129 (189)
+.++..+..+..-
T Consensus 547 ~~ll~~L~~ll~~ 559 (960)
T 1wa5_C 547 EILLKNLIALILK 559 (960)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9998888877654
No 33
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=41.37 E-value=54 Score=30.08 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=47.6
Q ss_pred HHHHHhhcc--CCchHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHh
Q psy3040 37 FDRVAETLR--SPSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILL 105 (189)
Q Consensus 37 ~~~ln~~~~--~~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLL 105 (189)
.+.+-..+. ++.-|..+|.-++.+++++|. +.+. .+ ....++.||..|.|..+-..|+.++..+.
T Consensus 331 ~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~-~~-~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 331 CNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAV-KT-HIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHH-HT-THHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHH-HH-HHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 445555554 456788999999999888874 2222 23 45788999998999999999988877765
No 34
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=37.83 E-value=64 Score=28.97 Aligned_cols=112 Identities=13% Similarity=0.209 Sum_probs=67.8
Q ss_pred hhhhhHHHHHHhccCcHHHHH-------HHHhhcCCCchhHHHHHHhhc---cCCchHhhHHHHHHHHHhcCCCchhhhc
Q psy3040 3 PWLVNGLVDYFLASNSLRAVD-------VLVIIREPHDKFLFDRVAETL---RSPSTRLGALTLLGHIVQRQPTWLYKIM 72 (189)
Q Consensus 3 ~~l~~~lvdy~~~t~s~~~~~-------iL~~~g~~~pk~l~~~ln~~~---~~~~~Rl~~L~LL~~~v~~qp~~l~~I~ 72 (189)
.|.++.|++..-..++.-..+ ++.++.+.+. .....+-+.+ ..|+-|..++-++|++-..-+
T Consensus 389 ~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~-~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~------- 460 (591)
T 2vgl_B 389 ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYE-SIIATLCENLDSLDEPDARAAMIWIVGEYAERID------- 460 (591)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCC-TTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCT-------
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHH-HHHHHHHHHHHhccCHHHHHHHHHHHHccccccc-------
Confidence 588888888877666544333 3333333322 2233343444 346678888888888743322
Q ss_pred cChhHHHHHHHHhccCccHHHHHHHHHHHHHHhcccccchhhhHHHHHHHH
Q psy3040 73 SHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEVF 123 (189)
Q Consensus 73 ~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip~~l~~~Lp~Lf~If 123 (189)
+.+..+..+++.+. |.+..+=..+++++..+.-+.|....+-+..++..+
T Consensus 461 ~~~~~l~~l~~~~~-~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~ 510 (591)
T 2vgl_B 461 NADELLESFLEGFH-DESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLA 510 (591)
T ss_dssp THHHHHHHHSTTCS-SSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 12226666666554 567778888999999999998876545555555543
No 35
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=36.40 E-value=83 Score=24.12 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=44.1
Q ss_pred CCCchhHHHHHHhhcc--CCchHhhHHHHHHHHHhcCCCchh-hhccChhHHHHHHHHhccCccHHHH
Q psy3040 30 EPHDKFLFDRVAETLR--SPSTRLGALTLLGHIVQRQPTWLY-KIMSHPTLMKDLLKILKTESDMVEV 94 (189)
Q Consensus 30 ~~~pk~l~~~ln~~~~--~~~~Rl~~L~LL~~~v~~qp~~l~-~I~~t~~L~~~LLkcL~~D~s~~vv 94 (189)
...||+-...|-..+. +|...+.||+||-..|..-....| .|++-. .++.+.+.+...++..|-
T Consensus 47 ~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~-Fl~el~~l~~~~~~~~Vk 113 (163)
T 1x5b_A 47 PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRD-FATEVRAVIKNKAHPKVC 113 (163)
T ss_dssp SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHH-HHHHHHHHHHTTCCHHHH
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHH-HHHHHHHHHccCCCHHHH
Confidence 3345555555555444 467889999999999999777777 666666 888888888643444333
No 36
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=35.91 E-value=79 Score=24.04 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=43.3
Q ss_pred cCCCchhHHHHHHhhcc-C--CchHhhHHHHHHHHHhcCCCchhh-hccChhHHHH-HHHHhc
Q psy3040 29 REPHDKFLFDRVAETLR-S--PSTRLGALTLLGHIVQRQPTWLYK-IMSHPTLMKD-LLKILK 86 (189)
Q Consensus 29 g~~~pk~l~~~ln~~~~-~--~~~Rl~~L~LL~~~v~~qp~~l~~-I~~t~~L~~~-LLkcL~ 86 (189)
++..||+-...|-..+. + |...+.||+||-..|..-....|. |++-. +++. +.|.+.
T Consensus 47 ~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~-fl~e~Lvk~~~ 108 (157)
T 1elk_A 47 TEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQD-FVESVLVRTIL 108 (157)
T ss_dssp SSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHH-HHHHHTHHHHS
T ss_pred CCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHH-HHHHHHHHHhc
Confidence 45567777777777775 2 456799999999999998788775 66666 8888 677774
No 37
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=35.05 E-value=1.8e+02 Score=25.13 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=52.7
Q ss_pred hHHHHHHhhccCC--chHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhc
Q psy3040 35 FLFDRVAETLRSP--STRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLP 106 (189)
Q Consensus 35 ~l~~~ln~~~~~~--~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP 106 (189)
..+..|-+.+..+ .-|..|+..++.+....+.....+.+.. +++.|++.|..+ +..+...|+.+|.-+--
T Consensus 299 ~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 299 RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAG-VLPALRLLLSSP-KENIKKEACWTISNITA 370 (530)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-HHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcc-hHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 3445555566544 4688999999999887777777788888 999999998765 67777777777776654
No 38
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=32.84 E-value=49 Score=27.71 Aligned_cols=74 Identities=15% Similarity=0.090 Sum_probs=51.5
Q ss_pred chhHHHHHHhhccC--CchHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhccccc
Q psy3040 33 DKFLFDRVAETLRS--PSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPG 110 (189)
Q Consensus 33 pk~l~~~ln~~~~~--~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip~ 110 (189)
|...++.+-+.+.. +..|.+++..++.++......-.+ --+ |.+.+.+++- |.|..|=.+|+.+++.+-=++..
T Consensus 165 ~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~--~l~-~~~~ia~ll~-D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 165 PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLK--SLS-VEKTVAPFVG-DKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGG--GGC-HHHHHGGGGG-CSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccc--ccc-chHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhhH
Confidence 44466666666664 348899999999999988776111 122 3377777665 99999999999999865544433
No 39
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=30.37 E-value=1.3e+02 Score=23.79 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=48.1
Q ss_pred cCCCchhHHHHHHhhccC--CchHhhHHHHHHHHHhcCCCchh-hhccChhHHHHHHHHhccCccHHHHHHHH
Q psy3040 29 REPHDKFLFDRVAETLRS--PSTRLGALTLLGHIVQRQPTWLY-KIMSHPTLMKDLLKILKTESDMVEVISAL 98 (189)
Q Consensus 29 g~~~pk~l~~~ln~~~~~--~~~Rl~~L~LL~~~v~~qp~~l~-~I~~t~~L~~~LLkcL~~D~s~~vv~~al 98 (189)
++..||+-...|-.-+.. |..-+.||+||...|..-....| .|++-+ +++.+.+.+..+.+..|-.-++
T Consensus 36 ~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~-fl~~l~~l~~~~~~~~Vk~kil 107 (220)
T 1dvp_A 36 KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKE-NCEMFSSFLESTPHENVRQKML 107 (220)
T ss_dssp TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHH-HHHHHHHHHHHCSCHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHH-HHHHHHHHhcCCCcHHHHHHHH
Confidence 344666666666665554 55778999999999998766665 566666 9999888876655555544443
No 40
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=29.65 E-value=54 Score=26.22 Aligned_cols=65 Identities=23% Similarity=0.294 Sum_probs=41.9
Q ss_pred HhhccCC--chHhhHHHHHHHHHhcCCCchhh------hccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhcccc
Q psy3040 41 AETLRSP--STRLGALTLLGHIVQRQPTWLYK------IMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIP 109 (189)
Q Consensus 41 n~~~~~~--~~Rl~~L~LL~~~v~~qp~~l~~------I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip 109 (189)
++-+... ..|++++-=+...++..+.-... +.+.. .+++-...|+++.++..|+-++..++....
T Consensus 15 ~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~----~~lkk~l~DsN~~v~~~al~~l~~~~~~~~ 87 (278)
T 4ffb_C 15 EERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDP----TLFAQYITDSNVVAQEQAIVALNSLIDAFA 87 (278)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCT----HHHHHHTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHH----HHHHHHhccchHHHHHHHHHHHHHHHHHhh
Confidence 3445544 38999999999888875543322 22222 234434469999999999999999887654
No 41
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=28.95 E-value=43 Score=25.24 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=35.2
Q ss_pred cCcHHHHHHHHhhcCCC---chhHHHHHHhhcc--CCchHhhHHHHHHHHHhc
Q psy3040 16 SNSLRAVDVLVIIREPH---DKFLFDRVAETLR--SPSTRLGALTLLGHIVQR 63 (189)
Q Consensus 16 t~s~~~~~iL~~~g~~~---pk~l~~~ln~~~~--~~~~Rl~~L~LL~~~v~~ 63 (189)
.+|+.-..-|..|...+ -++.-+.+.+++. .|++||.+|-|+.+++|.
T Consensus 20 ~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn 72 (145)
T 3d9j_A 20 PISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQ 72 (145)
T ss_dssp SCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHH
Confidence 35777777777766655 4555666666665 578999999999999885
No 42
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=28.84 E-value=1.3e+02 Score=25.92 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=48.5
Q ss_pred CCchHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHh
Q psy3040 46 SPSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILL 105 (189)
Q Consensus 46 ~~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLL 105 (189)
.++-|..|+..|+.+....|..-..+.+.. .++.|++.|.. .+..+...|+.+|..+.
T Consensus 186 ~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~-~l~~L~~ll~~-~~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 186 SVEVKEQAIWALGNVAGDSTDYRDYVLQCN-AMEPILGLFNS-NKPSLIRTATWTLSNLC 243 (530)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-CHHHHHHGGGS-CCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCccchHHHHHcC-cHHHHHHHhcc-CCHHHHHHHHHHHHHHh
Confidence 566899999999999887777777788888 99999999875 77788888888888887
No 43
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=28.34 E-value=29 Score=24.82 Aligned_cols=26 Identities=23% Similarity=0.602 Sum_probs=16.9
Q ss_pred CchhhhhHHHHHHhc-cCcHHHHHHHH
Q psy3040 1 KEPWLVNGLVDYFLA-SNSLRAVDVLV 26 (189)
Q Consensus 1 ~~~~l~~~lvdy~~~-t~s~~~~~iL~ 26 (189)
+|+|.++.|.+.+-+ .....+++||.
T Consensus 35 ~GSwFIq~Lc~~l~~~~~~~dl~~ilt 61 (105)
T 1pyo_B 35 RGSWYIEALAQVFSERACDMHVADMLV 61 (105)
T ss_dssp TEEHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 478889888887754 34444555543
No 44
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=27.84 E-value=1e+02 Score=26.15 Aligned_cols=77 Identities=22% Similarity=0.207 Sum_probs=59.6
Q ss_pred hHHHHHHhhccC--CchHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhcccccch
Q psy3040 35 FLFDRVAETLRS--PSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLI 112 (189)
Q Consensus 35 ~l~~~ln~~~~~--~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip~~l 112 (189)
+-++.+-+.+.. +..+..+|..+..++..-|.-+....=.. +++.+++.++ +.+.-+..-|+-||=.+|=.+|-+=
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~-~Ld~iI~llk-~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFINALS-QENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHTCC-STTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHh-ccchhHHHHHHHHHHHHHcCCCCCH
Confidence 445556566654 46899999999999998888777776677 8999998884 5566666678999999998888663
Q ss_pred h
Q psy3040 113 G 113 (189)
Q Consensus 113 ~ 113 (189)
.
T Consensus 111 ~ 111 (265)
T 3b2a_A 111 K 111 (265)
T ss_dssp H
T ss_pred H
Confidence 3
No 45
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=27.67 E-value=67 Score=31.77 Aligned_cols=91 Identities=19% Similarity=0.259 Sum_probs=64.2
Q ss_pred cCCCchhHHHHHHhhccCCc---hHhhHHHHHHHHHhcC-C-CchhhhccChhHHHHHHHHh-----------ccCccHH
Q psy3040 29 REPHDKFLFDRVAETLRSPS---TRLGALTLLGHIVQRQ-P-TWLYKIMSHPTLMKDLLKIL-----------KTESDMV 92 (189)
Q Consensus 29 g~~~pk~l~~~ln~~~~~~~---~Rl~~L~LL~~~v~~q-p-~~l~~I~~t~~L~~~LLkcL-----------~~D~s~~ 92 (189)
.+......++.+...+..++ =|-.|-.-|+-+++.. + .-.. + +..++-+.+ +.+.+..
T Consensus 837 ~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~-----~-li~~f~~~~~~~~~~~~~~~~~~~~~~ 910 (997)
T 1vsy_5 837 TEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLL-----S-LIERFAKGLDVNKYTSKERQKLSKTDI 910 (997)
T ss_dssp CTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHH-----H-HHHHHTTSSTTTSSCHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHH-----H-HHHHHHHHHhhcccccccccccchHHH
Confidence 44444577888888888776 8999999999999986 5 2111 1 222222211 1133347
Q ss_pred HHHHHHHHHHHHhcccccch--hhhHHHHHHHHHH
Q psy3040 93 EVISALLVLNILLPIIPGLI--GSHLTDIFEVFSR 125 (189)
Q Consensus 93 vv~~al~~LimLLP~ip~~l--~~~Lp~Lf~If~R 125 (189)
...+|++.|..++=-.|... ++++|+++...++
T Consensus 911 ~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~ 945 (997)
T 1vsy_5 911 KIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSS 945 (997)
T ss_dssp HHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHH
Confidence 88999999999999999997 8999998877765
No 46
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=26.16 E-value=18 Score=26.50 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=25.7
Q ss_pred hhhHHHHHHhccCcHHHHHHHHhhcCCCchhHHHH
Q psy3040 5 LVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDR 39 (189)
Q Consensus 5 l~~~lvdy~~~t~s~~~~~iL~~~g~~~pk~l~~~ 39 (189)
+++.+=|||.+.+..++.+.|++.-....|.++..
T Consensus 49 vI~flR~yY~e~~~~P~iR~l~K~~~~~~k~Ly~L 83 (105)
T 3or1_C 49 IIDFLQDYYKANGIAPMVRILSKNTGFALKEIYEL 83 (105)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCcHHHHHHHHCcCHHHHHHH
Confidence 78899999999888777778877765555544433
No 47
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=25.62 E-value=20 Score=19.69 Aligned_cols=12 Identities=42% Similarity=0.600 Sum_probs=10.9
Q ss_pred HHHHHhccCcHH
Q psy3040 9 LVDYFLASNSLR 20 (189)
Q Consensus 9 lvdy~~~t~s~~ 20 (189)
|||+|-+|.|++
T Consensus 3 lvdffcetcskp 14 (26)
T 1loi_A 3 LVDFFCETCSKP 14 (26)
T ss_dssp HHHHHHHTSSCT
T ss_pred hHHHHHHhcCCc
Confidence 799999999987
No 48
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=24.94 E-value=95 Score=23.34 Aligned_cols=50 Identities=20% Similarity=0.295 Sum_probs=37.8
Q ss_pred cCcHHHHHHHHhhcCC---CchhHHHHHHhhcc--CCchHhhHHHHHHHHHhcCC
Q psy3040 16 SNSLRAVDVLVIIREP---HDKFLFDRVAETLR--SPSTRLGALTLLGHIVQRQP 65 (189)
Q Consensus 16 t~s~~~~~iL~~~g~~---~pk~l~~~ln~~~~--~~~~Rl~~L~LL~~~v~~qp 65 (189)
.+|++...-|..+... +.++..+.+.+++. .|++++.+|-|+.++|+.-.
T Consensus 21 ~nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g 75 (144)
T 1sz9_A 21 FNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVG 75 (144)
T ss_dssp SCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhcc
Confidence 4777766666665544 56677778888886 47899999999999999754
No 49
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=24.77 E-value=2.5e+02 Score=23.66 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=43.5
Q ss_pred CchHhhHHHHHHHHHhcCCC---chhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHh
Q psy3040 47 PSTRLGALTLLGHIVQRQPT---WLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILL 105 (189)
Q Consensus 47 ~~~Rl~~L~LL~~~v~~qp~---~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLL 105 (189)
++-|..++..|+.+....|. +--.+.+.. .++.|++.|+.+.+..+...|+.++.-+-
T Consensus 324 ~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~-~i~~L~~lL~~~~~~~v~~~a~~~l~nl~ 384 (529)
T 1jdh_A 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHY-GLPVVVKLLHPPSHWPLIKATVGLIRNLA 384 (529)
T ss_dssp HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTT-CHHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHcC-ChhHHHHHhccccchHHHHHHHHHHHHHh
Confidence 56789999999999776555 345778888 89999999988776566666665555544
No 50
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=23.87 E-value=3e+02 Score=23.33 Aligned_cols=99 Identities=10% Similarity=0.094 Sum_probs=56.3
Q ss_pred HHHHHhhcCCCch-----hHHHHHHhhccCCc--hHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHH
Q psy3040 22 VDVLVIIREPHDK-----FLFDRVAETLRSPS--TRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEV 94 (189)
Q Consensus 22 ~~iL~~~g~~~pk-----~l~~~ln~~~~~~~--~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv 94 (189)
.+.|..+++..+. .+...+.+.+..++ .|..+...++.+...-++- ..... +++.+++.++ |.+..+-
T Consensus 224 ~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~-l~~~l~~~l~-d~~~~vr 298 (588)
T 1b3u_A 224 VEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE---ITKTD-LVPAFQNLMK-DCEAEVR 298 (588)
T ss_dssp HHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH---HHHHT-HHHHHHHHHT-CSSHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc---cchhH-HHHHHHHHhC-CCcHHHH
Confidence 4455555544332 34455555555543 5888888888887643221 12234 6666666654 7777777
Q ss_pred HHHHHHHHHHhcccccchh--hhHHHHHHHHHH
Q psy3040 95 ISALLVLNILLPIIPGLIG--SHLTDIFEVFSR 125 (189)
Q Consensus 95 ~~al~~LimLLP~ip~~l~--~~Lp~Lf~If~R 125 (189)
..|..++-.+...++.... .+++.+...+.+
T Consensus 299 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~ 331 (588)
T 1b3u_A 299 AAASHKVKEFCENLSADCRENVIMSQILPCIKE 331 (588)
T ss_dssp HHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHH
Confidence 7777777777766654311 344444444433
No 51
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=23.58 E-value=42 Score=23.29 Aligned_cols=26 Identities=8% Similarity=0.148 Sum_probs=18.2
Q ss_pred CchhhhhHHHHHHhc-cCcHHHHHHHH
Q psy3040 1 KEPWLVNGLVDYFLA-SNSLRAVDVLV 26 (189)
Q Consensus 1 ~~~~l~~~lvdy~~~-t~s~~~~~iL~ 26 (189)
+|+|.++.|.+.+-+ ..+..+.+||.
T Consensus 29 ~GSwfIq~Lc~~l~~~~~~~dl~~il~ 55 (88)
T 1sc3_B 29 MGSVFIGRLIEHMQEYACSCDVEEIFR 55 (88)
T ss_dssp TEEHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCcCcHHHHHH
Confidence 478999999888764 34455666663
No 52
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=23.49 E-value=1.6e+02 Score=24.43 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=53.0
Q ss_pred HHHhhccC--CchHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhcccc
Q psy3040 39 RVAETLRS--PSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIP 109 (189)
Q Consensus 39 ~ln~~~~~--~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip 109 (189)
.|-+.+.. +.-|..|...++.+....+...-.+.+.. .++.|.+.|..+ +..+...|+.+|..++-.-+
T Consensus 171 ~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g-~i~~Lv~LL~~~-d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 171 VLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG-MVQQLVALVRTE-HSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT-HHHHHHHHHTSC-CSTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC-CHHHHHHHHcCC-ChhHHHHHHHHHHHHHhCCh
Confidence 45455554 45677899999999998888889999999 999999998765 56667777777776665533
No 53
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=23.37 E-value=1.1e+02 Score=22.10 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=26.9
Q ss_pred cCCCchhHHHHHHhhcc--CCchHhhHHHHHHHHHhc
Q psy3040 29 REPHDKFLFDRVAETLR--SPSTRLGALTLLGHIVQR 63 (189)
Q Consensus 29 g~~~pk~l~~~ln~~~~--~~~~Rl~~L~LL~~~v~~ 63 (189)
-.++.++..+.+.+++. .++.|+..|-|++++++.
T Consensus 33 ~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~n 69 (135)
T 4fu3_A 33 HRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQN 69 (135)
T ss_dssp TGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 34566777777777776 467999999999999763
No 54
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=22.94 E-value=43 Score=23.43 Aligned_cols=26 Identities=19% Similarity=0.526 Sum_probs=17.0
Q ss_pred CchhhhhHHHHHHhc-cCcHHHHHHHH
Q psy3040 1 KEPWLVNGLVDYFLA-SNSLRAVDVLV 26 (189)
Q Consensus 1 ~~~~l~~~lvdy~~~-t~s~~~~~iL~ 26 (189)
+|+|.++.|.+.+-+ .....+++||.
T Consensus 31 ~GSwfIq~Lc~~l~~~~~~~dl~~ilt 57 (97)
T 2ql9_B 31 RGSWFVQALCSILEEHGKDLEIMQILT 57 (97)
T ss_dssp TEEHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred CCCeeHHHHHHHHHHhCCCCcHHHHHH
Confidence 478888888887754 33445555554
No 55
>1c1k_A BPT4 gene 59 helicase assembly protein; DNA replication, DNA recombination, forked DNA, DNA binding protein; 1.45A {Enterobacteria phage T4} SCOP: a.120.1.1
Probab=22.38 E-value=20 Score=29.71 Aligned_cols=47 Identities=23% Similarity=0.524 Sum_probs=40.6
Q ss_pred HhhcCCCchhHHHHHHhhccCCchHhhHHHHHHHHHhcCCCchhhhccCh
Q psy3040 26 VIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQRQPTWLYKIMSHP 75 (189)
Q Consensus 26 ~~~g~~~pk~l~~~ln~~~~~~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~ 75 (189)
.+|.+++++.||++|.+-+... -+ .+.+++.||..+..|+-.|++..
T Consensus 48 ~sF~kRrDryfFeKLA~k~t~~--El-~~~fvaNfv~n~~~wig~i~~~d 94 (217)
T 1c1k_A 48 AAYQKRRDKYFFQKLSEKYKLK--EL-ALIFISNLVANQDAWIGDISDAD 94 (217)
T ss_dssp HHHHHCSCHHHHHHHHHHCCHH--HH-HHHHHHHHHHCHHHHSSCGGGTT
T ss_pred HHHHHhhhhHHHHHHHhhccHH--HH-HHHHHHHhhhCCCcceeecccch
Confidence 3678899999999999998863 23 88999999999999999998876
No 56
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=22.05 E-value=4.1e+02 Score=23.86 Aligned_cols=84 Identities=18% Similarity=0.155 Sum_probs=55.9
Q ss_pred HHHhhcCCCchhHHHHHHhh---cc--CCchHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHH
Q psy3040 24 VLVIIREPHDKFLFDRVAET---LR--SPSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISAL 98 (189)
Q Consensus 24 iL~~~g~~~pk~l~~~ln~~---~~--~~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al 98 (189)
.+..+.+.+|....-.+|.. +. ++..|-.||..+|.+.. | .++ -+ +.+.+.++|. |.+..+=..|+
T Consensus 93 ~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~----~~~-~~-l~~~l~~~L~-~~~~~VRk~A~ 163 (618)
T 1w63_A 93 GAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS--S----EMC-RD-LAGEVEKLLK-TSNSYLRKKAA 163 (618)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--H----HHH-HH-HHHHHHHHHH-SCCHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--H----HHH-HH-HHHHHHHHHc-CCCHHHHHHHH
Confidence 35556666654333333333 23 45689999999999842 2 233 24 7888888886 68899999999
Q ss_pred HHHHHHhcccccchhhhH
Q psy3040 99 LVLNILLPIIPGLIGSHL 116 (189)
Q Consensus 99 ~~LimLLP~ip~~l~~~L 116 (189)
.++..+....|..+..++
T Consensus 164 ~al~~l~~~~p~~v~~~~ 181 (618)
T 1w63_A 164 LCAVHVIRKVPELMEMFL 181 (618)
T ss_dssp HHHHHHHHHCGGGGGGGG
T ss_pred HHHHHHHHHChHHHHHHH
Confidence 999888877776554433
No 57
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=21.74 E-value=2.2e+02 Score=22.69 Aligned_cols=96 Identities=11% Similarity=0.223 Sum_probs=58.7
Q ss_pred CCCchhHHHHHHhhcc--CCchHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhcc
Q psy3040 30 EPHDKFLFDRVAETLR--SPSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPI 107 (189)
Q Consensus 30 ~~~pk~l~~~ln~~~~--~~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ 107 (189)
+..||+=...|-..+. +|..-+.||+||-..|..-.+..|..+.+...++.|.+.+...++..|-.-++-.+-..==.
T Consensus 40 ~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 40 DTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 3445555555555554 45678899999999999988877755555538888777776666655555444444332222
Q ss_pred cccchhhhHHHHHHHHHHHh
Q psy3040 108 IPGLIGSHLTDIFEVFSRLA 127 (189)
Q Consensus 108 ip~~l~~~Lp~Lf~If~Rl~ 127 (189)
+++ .+-++.+-+.|-.|.
T Consensus 120 f~~--~~~l~~i~~~Y~~Lk 137 (226)
T 3zyq_A 120 FRN--EPKYKVVQDTYQIMK 137 (226)
T ss_dssp TTT--CGGGHHHHHHHHHHH
T ss_pred hCC--CcchHHHHHHHHHHH
Confidence 222 233455666666664
No 58
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=21.26 E-value=62 Score=31.37 Aligned_cols=85 Identities=12% Similarity=0.128 Sum_probs=56.4
Q ss_pred HHHHhhcCCCc--hhHHHHHHhhccCCchHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhc----cCccHHHHHH
Q psy3040 23 DVLVIIREPHD--KFLFDRVAETLRSPSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILK----TESDMVEVIS 96 (189)
Q Consensus 23 ~iL~~~g~~~p--k~l~~~ln~~~~~~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~----~D~s~~vv~~ 96 (189)
.+|.+|+-.-| ..+...++.....++-|-.+|..+..+....|.- -.. .|.+.+.++- -|.+...+..
T Consensus 158 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~-----~~~-~~~~~~~~l~~e~~~~~~~~~~~~ 231 (778)
T 3opb_A 158 QLLNKFKYNFKEVRFLVKELILRISEDEVKSMMLIIFAELQSSFQKD-----FDK-AVVDFMSSLIVEAEIDVGNDPLSI 231 (778)
T ss_dssp HHHHHSCCCSTTTTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHcCccccchhhHHHHhccccChhhhHHHHHHHHHHHHHhCchH-----HHH-HHHHHHHHHHHhhccCCCCccHHH
Confidence 34444444333 3455666666667788888999999888764422 223 6777777776 4444456777
Q ss_pred HHHHHHHHhcccccchh
Q psy3040 97 ALLVLNILLPIIPGLIG 113 (189)
Q Consensus 97 al~~LimLLP~ip~~l~ 113 (189)
++.++.++.|.+|..-.
T Consensus 232 ~~~~l~~lfPi~p~~~s 248 (778)
T 3opb_A 232 IVKTLSELYPSLTTLCS 248 (778)
T ss_dssp HHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHhcCCHHHHH
Confidence 88899999999997643
Done!