RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3040
(189 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 7e-05
Identities = 33/184 (17%), Positives = 62/184 (33%), Gaps = 36/184 (19%)
Query: 6 VNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQRQP 65
++ L L N V +I+ + + P + L V
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKN------YITARIMAKRPFDKKSNSALFRA-VGEGN 153
Query: 66 TWLYKIM----SHPTLMKDLLKILKTESDMVE--VISALLVLNILLPIIPGLIGSHLTDI 119
L I + ++L + +T +V + + L+ L+ D
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI--------RTTLDA 205
Query: 120 FEVFSR---LAAW---NSDNPRQ--LASSHV------LHLQVALYALFYQLYGMFPCTFL 165
+VF++ + W S+ P + L S + + +Q+A Y + +L G P
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV-IQLAHYVVTAKLLGFTPGELR 264
Query: 166 SYLK 169
SYLK
Sbjct: 265 SYLK 268
Score = 27.3 bits (60), Expect = 4.2
Identities = 17/151 (11%), Positives = 42/151 (27%), Gaps = 35/151 (23%)
Query: 34 KFLFDRVAETLRSPSTRLGALTLLGHIVQRQPTWLYKIMSHPT--LMKDLLKILKTESDM 91
+ +++R + G ++L IV P L +++ + E+ +
Sbjct: 1643 QDVWNRADNHFKD---TYG-FSIL-DIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIV 1697
Query: 92 VEVISALLVLNILLPIIPGLIGSH------LTD-----IFEV----FSRLAAWNSDNPRQ 136
+ + + T + + F L +
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA 1757
Query: 137 ------------LAS-SHVLHLQVALYALFY 154
LAS + V+ ++ + +FY
Sbjct: 1758 TFAGHSLGEYAALASLADVMSIESLVEVVFY 1788
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.004
Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 31/152 (20%)
Query: 16 SNSLRAVD----VLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQRQPTWLYKI 71
+ + A + +L+ R K + D ++ + HI +
Sbjct: 256 AKAWNAFNLSCKILLTTR---FKQVTDFLSAATTT------------HISLDHHSMT--- 297
Query: 72 MSHPTLMKDLLKILKTESDMV--EVISALLVLNILLPIIPGLIGSHLTDIFEVFSRLAAW 129
++ + LLK L + EV++ P +I + D +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLT-------TNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 130 NSDNPRQLASSHVLHLQVALYALFYQLYGMFP 161
N D + S + L+ A Y + +FP
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Score = 30.2 bits (67), Expect = 0.46
Identities = 44/235 (18%), Positives = 71/235 (30%), Gaps = 74/235 (31%)
Query: 1 KEPWLVNG---LVDYFLASNSLRAVDVLVI-IREPHDKFLFDRVAETLRSPSTRLGALTL 56
V+G L L+ V V + + KFL + R PS +
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQE-EMVQKFVEEVLRINYKFLMSPIKTEQRQPS-----MMT 109
Query: 57 LGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVL----NILLPIIPG-- 110
+I QR + + K + L+ +++ ALL L N+L+ + G
Sbjct: 110 RMYIEQRDRLY----NDNQVFAKYNVSRLQP---YLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 111 ---LIGSHLTDI-------FEVFSRLAAW----NSDNPRQLASSHVLHLQVALYALFYQL 156
+ F++F W N ++P + + LQ L YQ+
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIF-----WLNLKNCNSPETV----LEMLQ----KLLYQI 209
Query: 157 YGMF----------PCTFLS-------YLKQEYNMRC----DNV---NACNVFNH 187
+ S LK + C NV A N FN
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Score = 27.9 bits (61), Expect = 2.3
Identities = 28/197 (14%), Positives = 59/197 (29%), Gaps = 61/197 (30%)
Query: 53 ALTLLGHIVQRQP-TW----LYKIMSHPTLMKDLLKILKTESDMVEVISALLVL----NI 103
L+++ ++ TW T+++ L +L+ + ++ L V +I
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHI 387
Query: 104 ---LLPII-PGLIGSHLTDIFEVFSRLAAWNSDNPRQLASSHVLHLQ------------- 146
LL +I +I S + + + + S ++L+
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 147 --VALYAL-----------------FY-------------QLYGMFPCTFLSY--LKQEY 172
V Y + FY + +F FL + L+Q+
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 173 NMRCDNVNACNVFNHTI 189
NA +T+
Sbjct: 508 RHDSTAWNASGSILNTL 524
>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding,
transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe}
SCOP: b.43.4.3 b.43.4.3
Length = 208
Score = 27.1 bits (61), Expect = 3.1
Identities = 12/49 (24%), Positives = 14/49 (28%), Gaps = 24/49 (48%)
Query: 33 DKFLFDRVAETLR-------------------SPSTRLGALTLLGHIVQ 62
F E+LR STR+G GH VQ
Sbjct: 57 YHFTVGIAPESLRLTNLGQCKAGDPVNLERAVLSSTRMG-----GHFVQ 100
>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target,
structure-based design, transferase; 2.00A {Escherichia
coli} SCOP: b.43.4.3 b.43.4.3 PDB: 1hze_A* 1i18_A*
1pkv_A*
Length = 213
Score = 27.1 bits (61), Expect = 3.1
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 24/49 (48%)
Query: 33 DKFLFDRVAETLR-------------------SPSTRLGALTLLGHIVQ 62
+ FD + ETLR S +G GH++
Sbjct: 57 NHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIG-----GHLMS 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.140 0.427
Gapped
Lambda K H
0.267 0.0542 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,858,075
Number of extensions: 159032
Number of successful extensions: 511
Number of sequences better than 10.0: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 13
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.0 bits)