RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3040
         (189 letters)



>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 336

 Score = 25.6 bits (56), Expect = 4.0
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 68  LYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGL 111
            + +   P L+ DLL +L    D    ++    +  L  + P L
Sbjct: 228 QFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYL 271


>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 876

 Score = 25.1 bits (53), Expect = 7.2
 Identities = 19/122 (15%), Positives = 34/122 (27%), Gaps = 2/122 (1%)

Query: 34  KFLFDRVAETLRSPSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVE 93
             L   V     +   +   L  +G+I Q       +  S+  L   +  + K E     
Sbjct: 131 PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNV 190

Query: 94  VISALLVLNILLPIIP--GLIGSHLTDIFEVFSRLAAWNSDNPRQLASSHVLHLQVALYA 151
            ++A   L   L          S    I +V            R  A  +++ +    Y 
Sbjct: 191 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250

Query: 152 LF 153
             
Sbjct: 251 YM 252


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.140    0.427 

Gapped
Lambda     K      H
   0.267   0.0352    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 687,197
Number of extensions: 29070
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 6
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (24.1 bits)