BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3043
         (731 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1V9J|A Chain A, Solution Structure Of A Bola-Like Protein From Mus
           Musculus
          Length = 113

 Score = 35.4 bits (80), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/20 (75%), Positives = 17/20 (85%)

Query: 636 FTVLIVSDKFEGKGILQRHR 655
           F VL+VS KFEGK +LQRHR
Sbjct: 62  FRVLVVSAKFEGKPLLQRHR 81


>pdb|3QQI|A Chain A, Crystal Structure Of The Ha1 Receptor Binding Domain Of
          H2 Hemagglutinin
 pdb|3QQI|B Chain B, Crystal Structure Of The Ha1 Receptor Binding Domain Of
          H2 Hemagglutinin
          Length = 219

 Score = 30.4 bits (67), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 37 HPYSGQGKPPMFGDYEAQRHWMEITRH------LPVSTWYQNTT 74
          +P  G   P  F DYE  +H +   +H      LP   W Q+TT
Sbjct: 39 NPRDGLCYPGSFNDYEELKHLLSSVKHFEKVKILPKDRWTQHTT 82


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.142    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,776,317
Number of Sequences: 62578
Number of extensions: 827313
Number of successful extensions: 2228
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2227
Number of HSP's gapped (non-prelim): 10
length of query: 731
length of database: 14,973,337
effective HSP length: 106
effective length of query: 625
effective length of database: 8,340,069
effective search space: 5212543125
effective search space used: 5212543125
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)