Query psy3043
Match_columns 731
No_of_seqs 349 out of 1483
Neff 4.3
Searched_HMMs 46136
Date Sat Aug 17 00:02:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2575|consensus 100.0 6E-147 1E-151 1166.9 30.4 466 13-488 25-503 (510)
2 PF03155 Alg6_Alg8: ALG6, ALG8 100.0 4E-143 8E-148 1179.0 34.0 445 26-479 2-467 (469)
3 KOG2576|consensus 100.0 8.3E-99 2E-103 798.1 31.0 427 22-462 9-483 (500)
4 COG0271 BolA Stress-induced mo 99.8 1.2E-20 2.6E-25 168.1 8.8 82 591-682 6-89 (90)
5 PRK11628 transcriptional regul 99.8 1.7E-20 3.7E-25 171.5 9.2 84 589-683 3-88 (105)
6 KOG2313|consensus 99.8 2.4E-20 5.2E-25 166.9 8.6 86 587-680 9-100 (100)
7 PF01722 BolA: BolA-like prote 99.8 6.2E-19 1.3E-23 152.7 8.8 74 596-680 1-76 (76)
8 KOG3348|consensus 99.6 2.4E-16 5.2E-21 137.9 7.0 77 590-684 5-83 (85)
9 COG5007 Predicted transcriptio 99.3 6.2E-12 1.3E-16 109.3 6.9 71 591-682 4-77 (80)
10 PF09594 DUF2029: Protein of u 98.6 4.9E-06 1.1E-10 82.8 21.4 101 163-276 60-162 (241)
11 TIGR03459 crt_membr carotene b 98.6 5.5E-06 1.2E-10 93.2 22.4 284 82-400 140-453 (470)
12 COG5542 Predicted integral mem 97.7 7.5E-05 1.6E-09 82.8 8.1 157 83-263 93-249 (420)
13 COG5650 Predicted integral mem 97.6 0.00021 4.5E-09 81.3 9.3 192 49-263 103-294 (536)
14 PF05208 ALG3: ALG3 protein; 97.6 0.00076 1.6E-08 74.3 12.5 101 182-288 130-231 (368)
15 PF13231 PMT_2: Dolichyl-phosp 97.1 0.0058 1.3E-07 56.8 11.4 150 84-261 1-157 (159)
16 PLN02841 GPI mannosyltransfera 96.7 0.024 5.3E-07 64.2 14.2 164 22-229 10-184 (440)
17 PF06728 PIG-U: GPI transamida 96.4 0.087 1.9E-06 58.5 15.6 132 83-231 56-195 (382)
18 PRK13279 arnT 4-amino-4-deoxy- 96.4 0.34 7.4E-06 56.6 20.9 269 58-370 37-330 (552)
19 KOG2762|consensus 96.1 0.014 3.1E-07 64.2 7.4 100 182-288 158-259 (429)
20 COG1807 ArnT 4-amino-4-deoxy-L 95.9 0.91 2E-05 51.9 21.2 178 50-262 38-223 (535)
21 PF10131 PTPS_related: 6-pyruv 95.6 0.42 9.2E-06 56.5 17.5 151 85-261 4-169 (616)
22 PF05007 Mannosyl_trans: Manno 95.4 0.045 9.7E-07 58.3 7.8 79 182-260 8-93 (259)
23 PF02366 PMT: Dolichyl-phospha 95.3 0.14 3E-06 52.5 10.8 172 23-223 3-190 (245)
24 PRK13375 pimE mannosyltransfer 93.0 20 0.00044 40.9 25.1 195 23-258 23-221 (409)
25 PF09852 DUF2079: Predicted me 92.7 8.7 0.00019 43.6 19.1 105 126-231 60-164 (449)
26 KOG3893|consensus 92.1 0.46 9.9E-06 52.3 7.6 204 19-261 20-238 (405)
27 PF04188 Mannosyl_trans2: Mann 92.0 1.6 3.5E-05 49.6 12.4 101 160-262 146-250 (443)
28 PHA01514 O-antigen conversion 90.6 30 0.00065 40.4 20.6 125 160-286 103-242 (485)
29 TIGR03663 conserved hypothetic 85.4 23 0.0005 40.5 15.4 96 123-225 71-173 (439)
30 TIGR03766 conserved hypothetic 83.2 6.2 0.00014 45.3 9.8 34 202-235 223-256 (483)
31 PF14897 EpsG: EpsG family 76.9 84 0.0018 32.8 15.0 48 181-228 114-161 (330)
32 PF09913 DUF2142: Predicted me 73.2 1.5E+02 0.0033 32.6 17.1 114 85-222 95-218 (389)
33 KOG3359|consensus 71.3 48 0.001 40.5 12.7 163 84-261 82-270 (723)
34 PF09586 YfhO: Bacterial membr 64.5 3.3E+02 0.0072 33.2 22.8 189 159-350 124-358 (843)
35 PF03901 Glyco_transf_22: Alg9 64.2 84 0.0018 35.1 12.3 70 160-230 114-195 (418)
36 COG1287 Uncharacterized membra 60.2 1.8E+02 0.004 35.8 15.0 25 81-105 81-107 (773)
37 PF14264 Glucos_trans_II: Gluc 58.7 2.6E+02 0.0055 29.9 18.0 75 159-235 80-161 (319)
38 KOG2647|consensus 58.3 1.3E+02 0.0029 34.8 12.4 116 160-280 159-279 (444)
39 COG3463 Predicted membrane pro 48.2 3.1E+02 0.0066 32.2 13.2 71 159-229 120-190 (458)
40 COG1928 PMT1 Dolichyl-phosphat 42.6 1.1E+02 0.0024 37.4 9.2 163 85-261 72-258 (699)
41 PRK10921 twin-arginine protein 33.6 2.2E+02 0.0048 30.5 9.0 43 308-350 72-121 (258)
42 PF11028 DUF2723: Protein of u 33.2 76 0.0016 32.4 5.2 60 174-233 95-170 (178)
43 CHL00182 tatC Sec-independent 32.3 2.3E+02 0.0049 30.4 8.7 68 240-326 33-100 (249)
44 TIGR01912 TatC-Arch Twin argin 27.1 3.6E+02 0.0078 28.6 9.1 77 239-326 10-87 (237)
45 PF15657 Tox-HNH-EHHH: HNH/End 24.7 62 0.0014 28.7 2.5 32 612-643 23-54 (72)
46 PRK10649 hypothetical protein; 20.9 9.4E+02 0.02 28.8 11.9 92 202-300 110-207 (577)
No 1
>KOG2575|consensus
Probab=100.00 E-value=5.6e-147 Score=1166.91 Aligned_cols=466 Identities=45% Similarity=0.774 Sum_probs=433.8
Q ss_pred cccchhHHHH-HHHHHHHHHHHhccCCCCCCCCCCCCcchHHhhHHHHHhccCCcccccccccccccccccCCCCchHHH
Q psy3043 13 DQSQQYISFL-LIVSGLLLRWLTSLHPYSGQGKPPMFGDYEAQRHWMEITRHLPVSTWYQNTTDNDLLYWGLDYPPLTAY 91 (731)
Q Consensus 13 ~~~~~~~~~~-ii~~~~llR~~vsl~~ySG~~~pPm~gDfEaqRhWmeIT~~LPlseWY~n~ts~DL~yWgLDYPPLtAY 91 (731)
..|++|.... ++++++++|+++|++||||+|+|||||||||||||||||.|||++|||+|+|+||||||||||||+|||
T Consensus 25 ~~~~~~~~~~~i~~~~l~~r~~Isl~pYSG~~~PPmyGDyEAQRHWmEIT~nLPv~qWY~n~t~NDLqYWGLDYPPLTAY 104 (510)
T KOG2575|consen 25 SKMEKWLLSSPILLVLLCVRSAISLNPYSGAGSPPMYGDYEAQRHWMEITVNLPVSQWYFNGTHNDLQYWGLDYPPLTAY 104 (510)
T ss_pred CccchhhhHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHhhcCcHHHHhhcCCCCccceecCCCCcHHHH
Confidence 3577888887 888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhCCCceEeccCCCCCCccceeeehhHHHHHHHHHHHHHHHHHHhhcccCcccchhhHHHHHHHHhccce
Q psy3043 92 HSLLCGYVAEYFVPDGVKLFTSHGHESYQHKYFMRLCVLVSDVLIYIPALLCFFSRTENSSSQRVSQTFVLSVALIYPGL 171 (731)
Q Consensus 92 ~s~llG~iA~~~~p~~v~L~~srg~es~~~klFMR~TVIvsDlli~~pAvl~~~~~~~~~~~~~~~~~~~~~liLlnPgL 171 (731)
|||++|.|++++||+||++++||||||.++|+|||.|||++|+++|+||+++|++++.|..+ +.++.+.++++++||++
T Consensus 105 hSyl~G~i~~f~NP~wvaL~tSRGfES~~hKlfMR~TViisd~liy~Pa~ify~~~~~r~~~-~~~~~a~~~~iLl~P~L 183 (510)
T KOG2575|consen 105 HSYLLGIIGNFINPEWVALHTSRGFESIAHKLFMRSTVIISDLLIYLPALIFYFKWLHRTRS-KKSKIAYAALILLYPSL 183 (510)
T ss_pred HHHHHHHHHhhcChhHhhhhccCCcccHHHHHHHHHHHHHHhHHHHhhHHHHHHHHhhhccC-cccHHHHHHHHHhCCce
Confidence 99999999999999999999999999999999999999999999999999999999853321 22345678899999999
Q ss_pred EEEeceeecchhHHHHHHHHHHHHHHcCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhcc---hhHHHHHHHHHH
Q psy3043 172 ILIDHGHFQFNCISLGLFIWACHHLHLNNPVCTAILFSLSVNYKQMELYHALPFFFYYLGHVYHT---TDIRLLLTLGSS 248 (731)
Q Consensus 172 ILIDHgHFQYNgvmLGLlLlSI~~L~~~r~llaAv~FslaLnfKqM~LY~APafF~YLL~~c~~~---~~i~rllkLg~v 248 (731)
++||||||||||+|||++++|++.+.++.+++|+++|++|+|+|||+|||||+||+||||+|.++ .++.|++++|++
T Consensus 184 ~LID~GHFQYNsisLGl~~~ai~~ll~~~~~~as~~F~LAlnyKQMeLY~A~pfF~fLLg~c~k~k~~~~f~ri~~ia~~ 263 (510)
T KOG2575|consen 184 LLIDHGHFQYNSISLGLTLYAIAALLKNFYVLASVLFVLALNYKQMELYHALPFFAFLLGSCLKPKLFNSFARIIKIALA 263 (510)
T ss_pred EEEecCcceechhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999983 258999999999
Q ss_pred HHHHHHHHHHHHhhh-hhHHHHHHHHcccccccchhhhhhhhhhhhHHHHHHhhcchhhHHHHHHHHHHHHHhhhhhhhc
Q psy3043 249 VLITFILVWLPFLSV-SQLGHVMYRLFPIYRGLFEDKVANFWCSANVVYKFTIYMTNDQMALMCLCTTLLAILPSCVSVF 327 (731)
Q Consensus 249 Vl~tfal~flPFl~~-~ql~Qvi~RLFPf~RGLfedyvANfWc~~n~~~K~~~~~~~~~l~~~slilTLla~lPs~v~L~ 327 (731)
|+.||+++|+||+.+ ++..|+++|+|||+||+||||||||||+.|++.|+|++++.+++..+++++|+++.+|+|+.++
T Consensus 264 Vv~TF~iiw~P~~~~~~~~~qvl~RlFPf~RGlfEDKVANfWCt~n~~~K~k~~ft~q~~~~iSl~~Tli~~LPs~v~l~ 343 (510)
T KOG2575|consen 264 VVGTFVIIWLPFLLSGDTALQVLHRLFPFARGLFEDKVANFWCTFNVFLKIKELFTQQQLQVISLAATLIGSLPSMVVLF 343 (510)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHhCchhcchhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 999999999999987 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhhHHHHHHHHhhhhhhcccccchhhhhhhhhhhhhccCCCCCcchhhhhhhhhccccccccCCCchhHHHHHHHH
Q psy3043 328 RKPNVVKFQQSLIVVSLGFFLFSFHVHEKSILLVSTPVILYLPRDPFPCVWFLFISTFSMFDLYIKDNLVLPSLTLMALY 407 (731)
Q Consensus 328 ~~Ps~~~Fl~al~~~slsFFLFSfqVHEKsILLpllPlsLL~~~~~~~~~~f~~vs~fSl~PLL~kd~L~l~yvvL~ll~ 407 (731)
++|+++.|.+++++||+||||||||||||+||+|++|+++|+.+.|.+..|++++++|||||||.|||+.++|++++++|
T Consensus 344 L~P~~~~f~~~L~~~slsFFLFSFQVHEKtILl~~LPa~lLls~~~~~~~~~~nva~FSm~PLL~kD~L~l~y~vl~~~f 423 (510)
T KOG2575|consen 344 LRPTNKGFLYGLTATSLSFFLFSFQVHEKTILLPALPALLLLSEYPSLVIWFLNVALFSMFPLLKKDGLLLPYVVLSFLF 423 (510)
T ss_pred hcccccchhhhhHhhhhhhhheeeeechhhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh--hc------ccccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHhccccccccCCCceEEeheec
Q psy3043 408 YTIIH--DF------ARKSRLVYYIFLGSLLGCVLLMCIALGVAPPPRYQHLFSLFIATYSFEQSLSKLSPHFLISFVIL 479 (731)
Q Consensus 408 ~~l~~--~~------~~~~~~~~~~~~~sl~~~~~l~i~~~~v~PP~ryPdL~~lL~s~~s~~~~~~~~~~~F~~f~ly~ 479 (731)
++++. .+ +.++.-++..+.++.+.|+.+.+++++++||+||||||+++|++.||+ ||.+|++ |
T Consensus 424 ~~ig~f~~~~k~~~~~~~~~pi~~~f~i~~i~~i~v~vl~l~i~pPqkyPdL~~ll~~~~s~~--------~F~~F~l-y 494 (510)
T KOG2575|consen 424 NWIGNFVVFYKTSLPRFKNYPIKYSFIIGTIIMISVVVLDLTIPPPQKYPDLWVLLNCFLSCV--------HFIYFLL-Y 494 (510)
T ss_pred HHhcceEEEecccchhhccCchhhhhHHHHHHHHHHHhheeecCCcccCccHHHHHHHHHHHH--------HHHHHHH-H
Confidence 99753 11 111222567777888888888899999999999999999999999999 9999999 5
Q ss_pred cCCCCceee
Q psy3043 480 GSGSQPFFA 488 (731)
Q Consensus 480 ~~~~~~~~~ 488 (731)
+++.+.+.+
T Consensus 495 ~n~~~~~~s 503 (510)
T KOG2575|consen 495 TNYAIFTKS 503 (510)
T ss_pred Hhhhheeec
Confidence 565554443
No 2
>PF03155 Alg6_Alg8: ALG6, ALG8 glycosyltransferase family; InterPro: IPR004856 N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). The addition of the three glucose residues is the final series of steps in the synthesis of the oligosaccharide precursor. Alg6 transfers the first glucose residue, and Alg8 transfers the second one []. In the human alg6 gene, a C-T transition, which causes Ala333 to be replaced with Val, has been identified as the cause of a congenital disorder of glycosylation, designated as type Ic OMIM:603147 []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0005789 endoplasmic reticulum membrane
Probab=100.00 E-value=3.6e-143 Score=1178.98 Aligned_cols=445 Identities=46% Similarity=0.752 Sum_probs=407.9
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCcchHHhhHHHHHhccCCcccccccccccccccccCCCCchHHHHHHHhhhhhhh-hC
Q psy3043 26 SGLLLRWLTSLHPYSGQGKPPMFGDYEAQRHWMEITRHLPVSTWYQNTTDNDLLYWGLDYPPLTAYHSLLCGYVAEY-FV 104 (731)
Q Consensus 26 ~~~llR~~vsl~~ySG~~~pPm~gDfEaqRhWmeIT~~LPlseWY~n~ts~DL~yWgLDYPPLtAY~s~llG~iA~~-~~ 104 (731)
+++++|++||++||||+|+|||||||||||||||||+|||++|||+|+||| |+|||||||||||||||++||+|++ +|
T Consensus 2 ~~~~~r~~v~l~p~s~~~~ppm~gDfEaqRhWmeiT~~LP~~~WY~~~t~~-l~yW~LDYPPl~Ay~~~~lg~~a~~~~~ 80 (469)
T PF03155_consen 2 IATLLRLLVSLGPYSGSGTPPMYGDFEAQRHWMEITHNLPISEWYFNDTSN-LQYWGLDYPPLFAYFSWLLGKIAHFFID 80 (469)
T ss_pred ceeHHHHHHHcCCcccCCCCCCCCcHHHHHHHHHHHccCCHHHHHhcCCCc-cCcCcCCCCchHHHHHHHHHhhccccCC
Confidence 468999999999999999999999999999999999999999999999999 9999999999999999999999999 99
Q ss_pred CCceEeccCCCCCCccceeeehhHHHHHHHHHHHHHHHHHHhhcccCc-ccchhhHHHHHHHHhccceEEEeceeecchh
Q psy3043 105 PDGVKLFTSHGHESYQHKYFMRLCVLVSDVLIYIPALLCFFSRTENSS-SQRVSQTFVLSVALIYPGLILIDHGHFQFNC 183 (731)
Q Consensus 105 p~~v~L~~srg~es~~~klFMR~TVIvsDlli~~pAvl~~~~~~~~~~-~~~~~~~~~~~liLlnPgLILIDHgHFQYNg 183 (731)
|+|+++.+||||||+++|+|||.|||++|+++++||++.+++..+..+ .++.++.+..+++++|||+|+||||||||||
T Consensus 81 p~~~~l~~s~g~~s~~~~~f~R~tVi~~d~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~PgLilIDH~HFQYN~ 160 (469)
T PF03155_consen 81 PEWVALVSSRGYESPSHKLFMRLTVIVSDLLLYIPAVLFFCKSSGRSRNQSSKQRFIALLLILLNPGLILIDHGHFQYNG 160 (469)
T ss_pred chhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHCchHHhhhhhhhhHHH
Confidence 999999999999999999999999999999999999999998773321 2223356788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhcc----hhHHHHHHHHHHHHHHHHHHHHH
Q psy3043 184 ISLGLFIWACHHLHLNNPVCTAILFSLSVNYKQMELYHALPFFFYYLGHVYHT----TDIRLLLTLGSSVLITFILVWLP 259 (731)
Q Consensus 184 vmLGLlLlSI~~L~~~r~llaAv~FslaLnfKqM~LY~APafF~YLL~~c~~~----~~i~rllkLg~vVl~tfal~flP 259 (731)
+|+|++++|++++.+|++++||++|+++||||||+||+||+||+||||+|+++ .+++|++++|++|++||+++|+|
T Consensus 161 ~~lGl~l~si~~~~~~~~l~~a~~F~~~Ln~Kqm~LY~Ap~~f~yLL~~c~~~~~~~~~~~~~~~lg~~Vi~~f~~~~~P 240 (469)
T PF03155_consen 161 FLLGLLLLSIAALIRGRYLLGAILFSLLLNFKQMFLYYAPAFFVYLLGSCFQRKSFRFSIKRLIKLGIVVIATFALSFGP 240 (469)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999973 36899999999999999999999
Q ss_pred HhhhhhHHHHHHHHcccccccchhhhhhhhhhhhHHHHHHhhcch-hhHHHHHHHHHHHHHhhhhhhhcccCchhhHHHH
Q psy3043 260 FLSVSQLGHVMYRLFPIYRGLFEDKVANFWCSANVVYKFTIYMTN-DQMALMCLCTTLLAILPSCVSVFRKPNVVKFQQS 338 (731)
Q Consensus 260 Fl~~~ql~Qvi~RLFPf~RGLfedyvANfWc~~n~~~K~~~~~~~-~~l~~~slilTLla~lPs~v~L~~~Ps~~~Fl~a 338 (731)
|+.++|++|+++|+|||+|||+|||||||||++|++||+++.+.. +..+++|+++|+++++|+|+.+|++|++++|++|
T Consensus 241 F~~~~~l~Qvl~RlFPF~RGL~hdy~ANfW~~~~~~~K~~~~~~~p~i~~~~~~~~Tl~~~lP~~~~l~~~p~~~~f~~~ 320 (469)
T PF03155_consen 241 FLYSGQLQQVLSRLFPFKRGLFHDYWANFWCLYNFVDKVLNLFLPPQITPLLTLILTLLAILPSLVKLWFRPSPRRFLLA 320 (469)
T ss_pred HHHhhhHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999998774 5556799999999999999999999999999999
Q ss_pred HHHHhhhhhhcccccchhhhhhhhhhhhhccCCCCC---cchhhhhhhhhccccccccCCCchhHHHHHHHHHHHHh---
Q psy3043 339 LIVVSLGFFLFSFHVHEKSILLVSTPVILYLPRDPF---PCVWFLFISTFSMFDLYIKDNLVLPSLTLMALYYTIIH--- 412 (731)
Q Consensus 339 l~~~slsFFLFSfqVHEKsILLpllPlsLL~~~~~~---~~~~f~~vs~fSl~PLL~kd~L~l~yvvL~ll~~~l~~--- 412 (731)
+++||++||||||||||||||+|++|+++|+..++. ...|++++|+|||||||+||||.++|++++++|+++..
T Consensus 321 l~~~sl~fFLFs~hVHEKaILl~llP~tLL~~~~~~~~~~~~~ls~v~~fSLfPLL~kd~l~l~~v~l~ll~~~l~~~~~ 400 (469)
T PF03155_consen 321 LVLCSLSFFLFSWHVHEKAILLPLLPLTLLAPEDPRDARWFFWLSNVGTFSLFPLLFKDGLTLIYVVLTLLYNILIYCFS 400 (469)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCCcceEEeHHHhhhHHhcccccccCcchHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999998 88999999999999999999999999999999998863
Q ss_pred h----cccccchhHHHHHHHHH----HHHHHHHHHhhccCCCCCCChHHHHHHHhccccccccCCCceEEeheec
Q psy3043 413 D----FARKSRLVYYIFLGSLL----GCVLLMCIALGVAPPPRYQHLFSLFIATYSFEQSLSKLSPHFLISFVIL 479 (731)
Q Consensus 413 ~----~~~~~~~~~~~~~~sl~----~~~~l~i~~~~v~PP~ryPdL~~lL~s~~s~~~~~~~~~~~F~~f~ly~ 479 (731)
. .++.....+.+...+++ .++..++++.+++||+||||||+++||+|||+ ||.++|+|+
T Consensus 401 ~~~~~~~~~~~~~~~~~~lyl~gl~~l~i~~~il~~~~~pp~r~PfLplmL~Svyca~--------gf~~~~ly~ 467 (469)
T PF03155_consen 401 SLKSSFRRRSPLLNRLEKLYLIGLIALMIYLHILHPLVPPPPRYPFLPLMLNSVYCAI--------GFFYFWLYF 467 (469)
T ss_pred hcccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHH--------HHHhhhhhe
Confidence 1 11222223333333333 33346778899999999999999999999999 999999864
No 3
>KOG2576|consensus
Probab=100.00 E-value=8.3e-99 Score=798.12 Aligned_cols=427 Identities=28% Similarity=0.456 Sum_probs=371.6
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCcchHHhhHHHHHhccCCcccccccccccccccccCCCCchHHHHHHHhhhhhh
Q psy3043 22 LLIVSGLLLRWLTSLHPYSGQGKPPMFGDYEAQRHWMEITRHLPVSTWYQNTTDNDLLYWGLDYPPLTAYHSLLCGYVAE 101 (731)
Q Consensus 22 ~ii~~~~llR~~vsl~~ySG~~~pPm~gDfEaqRhWmeIT~~LPlseWY~n~ts~DL~yWgLDYPPLtAY~s~llG~iA~ 101 (731)
....+...+++.+-..++| ||||||||||+||+++|++|||+|+||+ |||||||++||+||+++++|+
T Consensus 9 ~~~~~~t~lK~LLIP~Y~S--------TDFEVHRNWLAIT~slPlseWY~eaTSe----WTLDYPPFFAYFE~~LS~vA~ 76 (500)
T KOG2576|consen 9 AFAIITTFLKCLLIPAYRS--------TDFEVHRNWLAITHSLPLSEWYYEATSE----WTLDYPPFFAYFEWFLSQVAK 76 (500)
T ss_pred HHHHHHHHHHheeeccccc--------cchhhhhhHHHHhccCchHHHHHhcccc----eecCCCcHHHHHHHHHHHHHH
Confidence 3444556777777777777 9999999999999999999999999997 999999999999999999999
Q ss_pred --hhCCCceEeccCCCCCCccceeeehhHHHHHHHHHHHHHHHHHHhhcccCcccchhhHHHHHHHHhccceEEEeceee
Q psy3043 102 --YFVPDGVKLFTSHGHESYQHKYFMRLCVLVSDVLIYIPALLCFFSRTENSSSQRVSQTFVLSVALIYPGLILIDHGHF 179 (731)
Q Consensus 102 --~~~p~~v~L~~srg~es~~~klFMR~TVIvsDlli~~pAvl~~~~~~~~~~~~~~~~~~~~~liLlnPgLILIDHgHF 179 (731)
.+||+++.+++ .||+|..+.+|||.|||++|++..+ ++..-++..++.+++...+.+.+.++++|||++||||+||
T Consensus 77 ff~fD~~ml~~~~-l~y~s~~tl~FQR~SVIf~dll~~~-~~rr~~~l~~kl~k~~~~~~~~a~ll~~s~gLlIvDhIHF 154 (500)
T KOG2576|consen 77 FFGFDPRMLDVKN-LNYFSRRTLYFQRFSVIFSDLLLLY-GLRRSYRLTSKLGKDQKQRFACAVLLLLSPGLLIVDHIHF 154 (500)
T ss_pred HhcCCchheeccc-cCCCCcceEEEEeehhHHHHHHHHH-HHhhhhcccccCCcccccchHHHHHHHhCCCcEEEEEeee
Confidence 68999999974 8999999999999999999998543 3321122223333222223366677889999999999999
Q ss_pred cchhHHHHHHHHHHHHHHcCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-hhcc-----hhHHHHHHHHHHHHHHH
Q psy3043 180 QFNCISLGLFIWACHHLHLNNPVCTAILFSLSVNYKQMELYHALPFFFYYLGH-VYHT-----TDIRLLLTLGSSVLITF 253 (731)
Q Consensus 180 QYNgvmLGLlLlSI~~L~~~r~llaAv~FslaLnfKqM~LY~APafF~YLL~~-c~~~-----~~i~rllkLg~vVl~tf 253 (731)
||||+++|++++||.++.++|++++|+.|+.++||||+++|+||+||+|+||. |... .++.+.+|+|++|++.|
T Consensus 155 QYNgfLfgilLlSI~~l~~kr~l~~A~~fsvll~FKHIflY~ApaY~vylLr~Yc~~~nn~~~~~~~~vikL~~vv~~~F 234 (500)
T KOG2576|consen 155 QYNGFLFGILLLSIVFLKTKRYLLSAFLFSVLLNFKHIFLYVAPAYFVYLLRNYCLTSNNVFLANFLNVIKLGIVVLIPF 234 (500)
T ss_pred ecccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhheeeechhHHHHHHHHHHhcccchhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997 8753 34789999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHcccccccchhhhh-hhhhhhhHHHHHHhhc---------------------------chh
Q psy3043 254 ILVWLPFLSVSQLGHVMYRLFPIYRGLFEDKVA-NFWCSANVVYKFTIYM---------------------------TND 305 (731)
Q Consensus 254 al~flPFl~~~ql~Qvi~RLFPf~RGLfedyvA-NfWc~~n~~~K~~~~~---------------------------~~~ 305 (731)
+++++||+..+|++|+++|+|||+|||+||||| |||++||++||..... -++
T Consensus 235 ~~s~gPf~~~~qlpqvlSRLFPfsRGLtHAYWAPNFWALYnf~Dk~l~~vl~kl~~~~~~~~as~tsGLVq~~~hsVLp~ 314 (500)
T KOG2576|consen 235 AASFGPFIYVQQLPQVLSRLFPFSRGLTHAYWAPNFWALYNFADKVLAVVLLKLKYGINFPTASYTSGLVQDSSHSVLPQ 314 (500)
T ss_pred HHHhccHHHHHHhHHHHHHhCCcccccchhhccchHHHHHHHHHHHHHHHHHHccccccCCccccCCccccCcceeeccC
Confidence 999999999999999999999999999999999 9999999999976432 023
Q ss_pred hHHHHHHHHHHHHHhhhhhhhcccCc---hhhHHHHHHHHhhhhhhcccccchhhhhhhhhhhhhccCCCCCcchhhh--
Q psy3043 306 QMALMCLCTTLLAILPSCVSVFRKPN---VVKFQQSLIVVSLGFFLFSFHVHEKSILLVSTPVILYLPRDPFPCVWFL-- 380 (731)
Q Consensus 306 ~l~~~slilTLla~lPs~v~L~~~Ps---~~~Fl~al~~~slsFFLFSfqVHEKsILLpllPlsLL~~~~~~~~~~f~-- 380 (731)
..|..++++|+++++|+.+++|++|+ .++|+.+++.|++++|+||||||||+||++++|++++...++++..-+.
T Consensus 315 itp~~TF~l~ll~~~p~l~~L~~~p~~~~~~vFl~~vtLcglssflfgwHVheKaiLm~ilp~~~ls~~~~~~l~~~~il 394 (500)
T KOG2576|consen 315 ITPLATFALTLLLILPFLIKLWFKPCVSIPLVFLGAVTLCGLSSFLFGWHVHEKAILMVILPLSILSVLDREDLMAFSIL 394 (500)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccchhhhcchhHhHHHHHHHHHHHHHHhcCchhhhhhHHhH
Confidence 45789999999999999999999998 8999999999999999999999999999999999999999987766654
Q ss_pred -hhhhhccccccccCCCchhHHHHHHHHHHHHh-hcccc--cchhHHHHHHHHHHHHHHHHHHhhccC---CCCCCChHH
Q psy3043 381 -FISTFSMFDLYIKDNLVLPSLTLMALYYTIIH-DFARK--SRLVYYIFLGSLLGCVLLMCIALGVAP---PPRYQHLFS 453 (731)
Q Consensus 381 -~vs~fSl~PLL~kd~L~l~yvvL~ll~~~l~~-~~~~~--~~~~~~~~~~sl~~~~~l~i~~~~v~P---P~ryPdL~~ 453 (731)
.++.+|++|||++..+..++..++..|.+... .+++. ....+.....++.|...+.+++.+..+ ++++|+++.
T Consensus 395 ~~~g~~sL~plL~~~~~~~~k~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~y~~g~~p~~i~~~~~~~~~~~~k~~flpl 474 (500)
T KOG2576|consen 395 TIAGYYSLYPLLFTATEFPIKYLFTEIWCIPMFAAFRKTFPISLLNRLELTYILGLLPIVIYDEFKWRLSFLQKFEFLPL 474 (500)
T ss_pred HHHHHHhhhHHHhcCcccchhhHHHHHHHHHHHHHHHHhccchhhhHHHHHHHhccccHHHHhhhheeeeecccccchhH
Confidence 36689999999999999999999999987654 33221 225566677777888888889888887 899999999
Q ss_pred HHHHHhccc
Q psy3043 454 LFIATYSFE 462 (731)
Q Consensus 454 lL~s~~s~~ 462 (731)
+++|+||+.
T Consensus 475 ~ltsvy~a~ 483 (500)
T KOG2576|consen 475 MLTSVYCAL 483 (500)
T ss_pred HHHHHHHHh
Confidence 999999987
No 4
>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]
Probab=99.83 E-value=1.2e-20 Score=168.10 Aligned_cols=82 Identities=26% Similarity=0.457 Sum_probs=74.5
Q ss_pred HHHHHHHhhhhcCCceeeccccceEEEeCCCCCCCCCCCCCCCceEEEEEECcCCCCCCHHHHHHH--HHhHHHhcCCCc
Q psy3043 591 STVFQFLSTVLTMPLHIVIYLVLQDVVDDSDGCGGNDVVDGCGGKFTVLIVSDKFEGKGILQRHRK--ETYKKERRSPGK 668 (731)
Q Consensus 591 ~~I~~kL~~al~~P~~L~~~~~~leV~DeS~~Hag~~~~~G~gsHF~V~IVS~~F~G~s~v~RHR~--~aL~~ei~~~i~ 668 (731)
++|+++|+++| +|.++ +|+|||+.|.||.. |||+||+|+|||++|+|||+|+|||+ ++|+|+|.+++|
T Consensus 6 ~~Ie~~l~~~f-~p~~l-------~i~deS~~h~~~~~--g~~~Hf~i~IVS~~F~G~s~v~rHr~V~~~L~del~~~iH 75 (90)
T COG0271 6 ERIEKKLRAAF-PPSFL-------EIIDESHRHHGHAG--GGGSHFKVVIVSEAFQGKSLVARHRLVYSALKDELSGGIH 75 (90)
T ss_pred HHHHHHHHhcC-CCceE-------EEEecccccccCCC--CCCCeEEEEEEchhhCCccHHHHHHHHHHHHHHHHhccce
Confidence 58999999996 99998 99999999988864 68999999999999999999999999 999999999999
Q ss_pred eeeeeccchhhhhh
Q psy3043 669 QEGVGSNPAKAWNF 682 (731)
Q Consensus 669 ~~~~~~~~~~~w~~ 682 (731)
++++.+.+.++|..
T Consensus 76 ALal~t~t~~e~~~ 89 (90)
T COG0271 76 ALALHTYTPEEWKG 89 (90)
T ss_pred eeEeEeeccchhcc
Confidence 99997775557853
No 5
>PRK11628 transcriptional regulator BolA; Provisional
Probab=99.82 E-value=1.7e-20 Score=171.51 Aligned_cols=84 Identities=26% Similarity=0.444 Sum_probs=76.7
Q ss_pred HHHHHHHHHhhhhcCCceeeccccceEEEeCCCCCCCCCCCCCCCceEEEEEECcCCCCCCHHHHHHH--HHhHHHhcCC
Q psy3043 589 VVSTVFQFLSTVLTMPLHIVIYLVLQDVVDDSDGCGGNDVVDGCGGKFTVLIVSDKFEGKGILQRHRK--ETYKKERRSP 666 (731)
Q Consensus 589 v~~~I~~kL~~al~~P~~L~~~~~~leV~DeS~~Hag~~~~~G~gsHF~V~IVS~~F~G~s~v~RHR~--~aL~~ei~~~ 666 (731)
+.++|+++|+++| +|.+| +|+|||+.|+||. |+|+||+|+|||+.|+||++|+|||+ ++|+|+|+++
T Consensus 3 ~~~~I~~~L~~~l-~~~~l-------~V~d~S~~H~~~~---g~~~Hf~v~IVS~~F~G~s~v~RHRlVy~~L~~~i~~~ 71 (105)
T PRK11628 3 IREQIEEKLRAAF-QPVFL-------EVVDESYRHNVPA---GSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTT 71 (105)
T ss_pred cHHHHHHHHHhhC-CCcEE-------EEEECcccccCCC---CCCceEEEEEEChHhCCCCHHHHHHHHHHHHHHHHhCC
Confidence 4578999999996 99998 9999999998864 77899999999999999999999999 9999999999
Q ss_pred Cceeeeeccchhhhhhh
Q psy3043 667 GKQEGVGSNPAKAWNFI 683 (731)
Q Consensus 667 i~~~~~~~~~~~~w~~~ 683 (731)
||++++.+.+.+||++.
T Consensus 72 IHALsi~t~tp~Ew~~~ 88 (105)
T PRK11628 72 VHALALHTYTIKEWEGL 88 (105)
T ss_pred ccceeeecCCHHHHHHh
Confidence 99999988888889863
No 6
>KOG2313|consensus
Probab=99.82 E-value=2.4e-20 Score=166.88 Aligned_cols=86 Identities=24% Similarity=0.350 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHhhhhcCCceeeccccceEEEeCCCCCCCCCCCCC---CCceEEEEEECcCCCCCCHHHHHHH--HHhHH
Q psy3043 587 EEVVSTVFQFLSTVLTMPLHIVIYLVLQDVVDDSDGCGGNDVVDG---CGGKFTVLIVSDKFEGKGILQRHRK--ETYKK 661 (731)
Q Consensus 587 ~~v~~~I~~kL~~al~~P~~L~~~~~~leV~DeS~~Hag~~~~~G---~gsHF~V~IVS~~F~G~s~v~RHR~--~aL~~ 661 (731)
.+++.+|+++|.+++ +|.++ +++|||+.|+||.++.| +|+||+|.|||++|+|+|+++|||+ ++|+|
T Consensus 9 g~~~~ri~~~l~~~l-kp~~l-------e~~n~S~~hagH~~~kg~~~~EtHFrv~vVS~~FeG~s~v~RHRlVy~~L~e 80 (100)
T KOG2313|consen 9 GPRESRIREKLFEAL-KPLNL-------ELYNESHQHAGHAVPKGMDGAETHFRVEVVSSAFEGLSLVKRHRLVYKALKE 80 (100)
T ss_pred CcHHHHHHHHhHhhc-CcceE-------EEeeccccccccccccCCCCCccEEEEEEechhhCCccHHHHHHHHHHHHHH
Confidence 467789999999996 99998 99999999999999988 8899999999999999999999999 99999
Q ss_pred HhcC-CCceeeeeccchhhh
Q psy3043 662 ERRS-PGKQEGVGSNPAKAW 680 (731)
Q Consensus 662 ei~~-~i~~~~~~~~~~~~w 680 (731)
|+++ ++|++++.++|-+||
T Consensus 81 El~~~gvHAL~i~aKTP~e~ 100 (100)
T KOG2313|consen 81 ELAGTGVHALSIMAKTPSEV 100 (100)
T ss_pred HhhccceeEEEeeccCCCCC
Confidence 9999 899999988888777
No 7
>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs. In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.
Probab=99.78 E-value=6.2e-19 Score=152.74 Aligned_cols=74 Identities=34% Similarity=0.606 Sum_probs=64.4
Q ss_pred HHhhhhcCCceeeccccceEEEeCCCCCCCCCCCCCCCceEEEEEECcCCCCCCHHHHHHH--HHhHHHhcCCCceeeee
Q psy3043 596 FLSTVLTMPLHIVIYLVLQDVVDDSDGCGGNDVVDGCGGKFTVLIVSDKFEGKGILQRHRK--ETYKKERRSPGKQEGVG 673 (731)
Q Consensus 596 kL~~al~~P~~L~~~~~~leV~DeS~~Hag~~~~~G~gsHF~V~IVS~~F~G~s~v~RHR~--~aL~~ei~~~i~~~~~~ 673 (731)
||+++| +|.++ +|+|+|+.|+||. |+|+||+|+|||++|+|||+|+|||+ ++|+|+|++++|+.++.
T Consensus 1 Kl~~~l-~~~~l-------~V~d~S~~H~~h~---~g~sHf~i~IvS~~F~g~s~i~rhr~V~~~L~~~i~~~iHAlsi~ 69 (76)
T PF01722_consen 1 KLKAAL-PPTHL-------EVEDESHKHAGHA---GGGSHFKIIIVSDEFEGKSRIKRHRLVYKALKDEIKDGIHALSIK 69 (76)
T ss_dssp HHHHHH-TTSEE-------EEEE-SSSSSS-C---CSSSEEEEEEECGGGTTS-HHHHHHHHHHHTHHHHGCTCSEEEEE
T ss_pred ChhHhC-CCcEE-------EEEECcccccCCC---CCCceEEEEEEcHHhCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 677886 99998 9999999999997 44899999999999999999999999 99999999999999998
Q ss_pred ccchhhh
Q psy3043 674 SNPAKAW 680 (731)
Q Consensus 674 ~~~~~~w 680 (731)
+.+.+||
T Consensus 70 t~tp~Ew 76 (76)
T PF01722_consen 70 TYTPEEW 76 (76)
T ss_dssp EE-HHHH
T ss_pred cCCcccC
Confidence 8777778
No 8
>KOG3348|consensus
Probab=99.64 E-value=2.4e-16 Score=137.93 Aligned_cols=77 Identities=32% Similarity=0.547 Sum_probs=67.3
Q ss_pred HHHHHHHHhhhhcCCceeeccccceEEEeCCCCCCCCCCCCCCCceEEEEEECcCCCCCCHHHHHHH--HHhHHHhcCCC
Q psy3043 590 VSTVFQFLSTVLTMPLHIVIYLVLQDVVDDSDGCGGNDVVDGCGGKFTVLIVSDKFEGKGILQRHRK--ETYKKERRSPG 667 (731)
Q Consensus 590 ~~~I~~kL~~al~~P~~L~~~~~~leV~DeS~~Hag~~~~~G~gsHF~V~IVS~~F~G~s~v~RHR~--~aL~~ei~~~i 667 (731)
+++|+++|++++ +|+|+ +|+|+|. |||+.|+|.|||+.|+||+.|+|||+ ++|+|+|++.+
T Consensus 5 e~~l~~~L~~~l-~p~~v-------~V~D~Sg---------GCG~~F~v~IvS~~FeGKs~L~rHRlVN~~L~Eeik~iH 67 (85)
T KOG3348|consen 5 EERLEELLTEAL-EPEHV-------EVQDVSG---------GCGSMFDVVIVSAAFEGKSLLARHRLVNSILAEEIKEIH 67 (85)
T ss_pred HHHHHHHHHhhc-CceEE-------EEEEcCC---------CccceEEEEEEccccCChHHHHHHHHHHHHHHHHHHHHh
Confidence 568999999997 99998 9999998 79999999999999999999999999 99999997776
Q ss_pred ceeeeeccchhhhhhhe
Q psy3043 668 KQEGVGSNPAKAWNFIL 684 (731)
Q Consensus 668 ~~~~~~~~~~~~w~~~~ 684 (731)
+++ +.+.++++|.++.
T Consensus 68 alt-~kt~t~~~w~~~~ 83 (85)
T KOG3348|consen 68 ALT-IKTYTPEEWSKAS 83 (85)
T ss_pred hhe-eeecChhhhcccc
Confidence 666 5555555598763
No 9
>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]
Probab=99.28 E-value=6.2e-12 Score=109.33 Aligned_cols=71 Identities=20% Similarity=0.336 Sum_probs=57.8
Q ss_pred HHHHHHHhhhhcCCceeeccccceEEEeCCCCCCCCCCCCCCCceEEEEEECcCCCCCCHHHHHHH--HHhHHHhc-CCC
Q psy3043 591 STVFQFLSTVLTMPLHIVIYLVLQDVVDDSDGCGGNDVVDGCGGKFTVLIVSDKFEGKGILQRHRK--ETYKKERR-SPG 667 (731)
Q Consensus 591 ~~I~~kL~~al~~P~~L~~~~~~leV~DeS~~Hag~~~~~G~gsHF~V~IVS~~F~G~s~v~RHR~--~aL~~ei~-~~i 667 (731)
++|++-|+++| .-+++ +| .|+|+||.+++||+.|+|||||+|||+ +.|.+.|. +.|
T Consensus 4 e~Ik~ll~~~L-~~e~v-------~V-------------~Gdg~Hf~vi~Vs~~F~g~srvkrqq~vYApL~~~i~~~~I 62 (80)
T COG5007 4 EEIKSLLENAL-PLEEV-------EV-------------EGDGSHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIADNEI 62 (80)
T ss_pred HHHHHHHHhcC-CccEE-------EE-------------ecCCceEEEEEehHhhcCccHHHHHHHHHHHHHHHhhcCce
Confidence 46666676665 44444 66 267899999999999999999999999 99999999 899
Q ss_pred ceeeeeccchhhhhh
Q psy3043 668 KQEGVGSNPAKAWNF 682 (731)
Q Consensus 668 ~~~~~~~~~~~~w~~ 682 (731)
|++++.+.|..||..
T Consensus 63 HAlsikt~Tp~eW~~ 77 (80)
T COG5007 63 HALSIKTYTPAEWAR 77 (80)
T ss_pred EEEEeeecCHHHhhh
Confidence 999997666666974
No 10
>PF09594 DUF2029: Protein of unknown function (DUF2029); InterPro: IPR018584 This is a putative transmembrane protein from prokaryotes. It is likely to be conserved between Mycobacterium species []. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=98.65 E-value=4.9e-06 Score=82.76 Aligned_cols=101 Identities=21% Similarity=0.246 Sum_probs=69.3
Q ss_pred HHHHhccceEEEeceeecchhHHHHHHHHHHHHHHcCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhcchhHHHH
Q psy3043 163 SVALIYPGLILIDHGHFQFNCISLGLFIWACHHLHLNNPVCTAILFSLSVNYKQMELYHALPFFFYYLGHVYHTTDIRLL 242 (731)
Q Consensus 163 ~liLlnPgLILIDHgHFQYNgvmLGLlLlSI~~L~~~r~llaAv~FslaLnfKqM~LY~APafF~YLL~~c~~~~~i~rl 242 (731)
.++.+.|. +.+..-.|.|.+...+++++++++.++|+.+++++++++...|+.++.+.|.+.. ++.+|..
T Consensus 60 ~~~~~~p~--~~~~~~gq~~~l~~~l~~~a~~~~~r~r~~~agv~lgla~~~K~~p~~~l~~ll~--------~r~~r~~ 129 (241)
T PF09594_consen 60 LLLAFPPV--LSALGLGQFDLLVAALLLLALLALRRGRPWLAGVLLGLAAAIKLYPALLLPALLI--------RRRWRAA 129 (241)
T ss_pred HHHHHHHH--HHHHHhccHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHh--------cchHHHH
Confidence 34455555 4455556779999999999999999999999999999999999999999884432 2345665
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHccc
Q psy3043 243 LTLGSSVLITFILVWLPFLSV--SQLGHVMYRLFPI 276 (731)
Q Consensus 243 lkLg~vVl~tfal~flPFl~~--~ql~Qvi~RLFPf 276 (731)
....++.++.+++ |+... +......+-++..
T Consensus 130 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~ 162 (241)
T PF09594_consen 130 LWAAATAAVLFAL---PFLLFGPDSWQDFLSVLFQN 162 (241)
T ss_pred HHHHHHHHHHHHH---HHHHcCchHHHHHHHHHHHH
Confidence 5553333333333 55532 4455556644433
No 11
>TIGR03459 crt_membr carotene biosynthesis associated membrane protein. This model represents a family of hydrophobic and presumed membrane proteins. The genes encoding these proteins are syntenically associated with (found proximal to) genes of carotene biosynthesis ususally including phytoene synthase (crtB), phytoene dehydrogenase (crtI) and geranylgeranyl pyrophosphate synthase (ispA).
Probab=98.60 E-value=5.5e-06 Score=93.20 Aligned_cols=284 Identities=13% Similarity=0.063 Sum_probs=163.5
Q ss_pred cCCCCchHHHHHHHhhhhhhhhCCCceEeccCCCCCCccceeeehhHHHHHHHHHHHHHHHHHHhh-cccCcccchhhHH
Q psy3043 82 GLDYPPLTAYHSLLCGYVAEYFVPDGVKLFTSHGHESYQHKYFMRLCVLVSDVLIYIPALLCFFSR-TENSSSQRVSQTF 160 (731)
Q Consensus 82 gLDYPPLtAY~s~llG~iA~~~~p~~v~L~~srg~es~~~klFMR~TVIvsDlli~~pAvl~~~~~-~~~~~~~~~~~~~ 160 (731)
+-.|+|++.+.+-..+.+ ..+.+. ..++.+|+..+++|+++.+ +..+ .++.+.+.. .
T Consensus 140 ~aPYGPl~l~i~~~v~~l----~g~~i~----------~~v~~~Rl~~l~g~~l~~w-----~~~rLar~~g~~~~---~ 197 (470)
T TIGR03459 140 TTPYGPLHLLVGQAITTV----TGDNVT----------AGTLAFKLLSLPGLAVMVW-----AVPKLATHLGGNPT---V 197 (470)
T ss_pred CCCCChHHHHHHHHHHHH----hCCCcH----------HHHHHHHHHHHHHHHHHHH-----HHHHHHHHcCCCHH---H
Confidence 457999999987776665 222211 2578899999999998643 2222 344332222 3
Q ss_pred HHHHHHhccceEE--EeceeecchhHHHHHHHHHHHHHHcCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhc---
Q psy3043 161 VLSVALIYPGLIL--IDHGHFQFNCISLGLFIWACHHLHLNNPVCTAILFSLSVNYKQMELYHALPFFFYYLGHVYH--- 235 (731)
Q Consensus 161 ~~~liLlnPgLIL--IDHgHFQYNgvmLGLlLlSI~~L~~~r~llaAv~FslaLnfKqM~LY~APafF~YLL~~c~~--- 235 (731)
+.-+..+||-+|+ +.++|+ |++|+|+++.++++..++|.+.|+++.+++.+.|..++...|.++.+..++--+
T Consensus 198 AlWL~~~NPLviihlvgg~Hn--ealM~gl~l~gl~~~~r~~~~~g~vli~~a~~VK~~a~l~Lpf~~~~~~~~~~~~~~ 275 (470)
T TIGR03459 198 ALWLGVLNPLVVIHLIGGMHN--EMLMVGLVSAGILLALKRRPVAGIALIAVAVALKATAGIALPFVVWIWVAHVAGRLA 275 (470)
T ss_pred HHHHHHcCchhhhhhhcchhH--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccccc
Confidence 4555789999999 999999 999999999999999999999999999999999999999999988666554211
Q ss_pred ----------chhHHHHHHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHHcccccccc-hhhhhhhhhhhhH----HHHH
Q psy3043 236 ----------TTDIRLLLTLGSSVLITFILVWL--PFLSVSQLGHVMYRLFPIYRGLF-EDKVANFWCSANV----VYKF 298 (731)
Q Consensus 236 ----------~~~i~rllkLg~vVl~tfal~fl--PFl~~~ql~Qvi~RLFPf~RGLf-edyvANfWc~~n~----~~K~ 298 (731)
.+.++.+..-+.+.++.++..+. -+... .=.-+++- +- -.++-|--..... ...+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~a~~t~~sG-~G~GWi~a-------l~~~~~v~~wls~~t~lg~~~~~~ 347 (470)
T TIGR03459 276 YAAGKALPDLWRRVGTFVAAALVGVLVFVAVFALITAAAG-VGWGWLTA-------LSGNSKVINPLALPSLVASVIEPV 347 (470)
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcchHhh-------cCCCCeeecCCChHHHHHHHHHHH
Confidence 11233444333322222211111 11110 00001110 00 1233332122211 1222
Q ss_pred Hhhcch--h---hHH--HHHHHHHHHHHhhhhhhhcccCchhhHHHHHHHHhhhhhhcccccchhhhhhhhhhhhhccCC
Q psy3043 299 TIYMTN--D---QMA--LMCLCTTLLAILPSCVSVFRKPNVVKFQQSLIVVSLGFFLFSFHVHEKSILLVSTPVILYLPR 371 (731)
Q Consensus 299 ~~~~~~--~---~l~--~~slilTLla~lPs~v~L~~~Ps~~~Fl~al~~~slsFFLFSfqVHEKsILLpllPlsLL~~~ 371 (731)
-..+.. + .+. +.--....+..+..++..+++ +.+.-+.++...-.+.++|+==+|-=+.+=++.|+.-...
T Consensus 348 ~~l~g~~~~~~avl~v~R~ig~~v~~~~l~~~w~~~~~-~~~~~v~g~g~a~~~~vll~Pvv~PWY~lW~l~~la~~a~- 425 (470)
T TIGR03459 348 GSLFNDDLDFNAVVDVIRPISMVIMLLGLVATWWLFRH-DERAAVTGTAAAYAIAVVFNPVTLPWYYTWPLALAATFAQ- 425 (470)
T ss_pred HHHccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHcCC-
Confidence 222221 1 111 111111112224556666665 4566677788888889999999999998888887754442
Q ss_pred CCCcchhhhhhhhhccccccccCCCchhH
Q psy3043 372 DPFPCVWFLFISTFSMFDLYIKDNLVLPS 400 (731)
Q Consensus 372 ~~~~~~~f~~vs~fSl~PLL~kd~L~l~y 400 (731)
++........+|++-++ ....||..-.|
T Consensus 426 ~~~~~~~~~~~S~~l~~-~~~p~G~~~~y 453 (470)
T TIGR03459 426 SRWLIYLTAGASTWVMF-MFTGDGNHGLY 453 (470)
T ss_pred CchHHHHHHHHHHHhee-EEcCCCCcccc
Confidence 22222223334443333 33445544443
No 12
>COG5542 Predicted integral membrane protein [Function unknown]
Probab=97.74 E-value=7.5e-05 Score=82.80 Aligned_cols=157 Identities=14% Similarity=0.190 Sum_probs=118.1
Q ss_pred CCCCchHHHHHHHhhhhhhhhCCCceEeccCCCCCCccceeeehhHHHHHHHHHHHHHHHHHHhhcccCcccchhhHHHH
Q psy3043 83 LDYPPLTAYHSLLCGYVAEYFVPDGVKLFTSHGHESYQHKYFMRLCVLVSDVLIYIPALLCFFSRTENSSSQRVSQTFVL 162 (731)
Q Consensus 83 LDYPPLtAY~s~llG~iA~~~~p~~v~L~~srg~es~~~klFMR~TVIvsDlli~~pAvl~~~~~~~~~~~~~~~~~~~~ 162 (731)
.||+|++-|..-+.++++.-..+ .+--.+..+++|++.. ...|....++.+.++. ...+.
T Consensus 93 ~~~~p~~~y~i~ii~~L~~~~~~----------------~l~~~l~s~~~~~~~a---y~lY~~tk~~y~~~~~-a~fa~ 152 (420)
T COG5542 93 ADYFPLYLYWIRIINKLLSSLYF----------------ILAIKLFSNIADFVAA---YFLYKITKLRYGLGSM-ARFAT 152 (420)
T ss_pred cccCchHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHHHHHH---HHHHHHHHHHcccchh-hhheE
Confidence 59999999999999999665111 1223566777887642 2222222122222222 12455
Q ss_pred HHHHhccceEEEeceeecchhHHHHHHHHHHHHHHcCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhcchhHHHH
Q psy3043 163 SVALIYPGLILIDHGHFQFNCISLGLFIWACHHLHLNNPVCTAILFSLSVNYKQMELYHALPFFFYYLGHVYHTTDIRLL 242 (731)
Q Consensus 163 ~liLlnPgLILIDHgHFQYNgvmLGLlLlSI~~L~~~r~llaAv~FslaLnfKqM~LY~APafF~YLL~~c~~~~~i~rl 242 (731)
.++.++|..|...-+..|=+|+.+.+.+++++++.+++...|+++|++|..+|..++.++|.+.+.+.+. ++++..
T Consensus 153 i~~~~~P~~i~~s~iw~~teSlf~ll~~l~iyf~~~k~~~~a~~~faLa~l~Rsngi~~~p~fl~~~ik~----~~ik~i 228 (420)
T COG5542 153 ILVILSPSVIYNSAIWGQTESLFTLLSILAIYFFSIKKQIPALFFFALATLFRSNGIFLSPLFLIPLIKN----RKIKII 228 (420)
T ss_pred EEEEeccHHHhhhhHHhccchHHHHHHHHHHHHHHccchhHHHHHHHHHHHhccchhHHHHHHHHHHHhh----hhHHHh
Confidence 6677889999999999999999999999999999999999999999999999999999999999888663 346777
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy3043 243 LTLGSSVLITFILVWLPFLSV 263 (731)
Q Consensus 243 lkLg~vVl~tfal~flPFl~~ 263 (731)
......+-.++.....|....
T Consensus 229 ~~~l~~~~l~~~~ll~~~~~~ 249 (420)
T COG5542 229 WYLLPSGSLTYLSLLMPAWIL 249 (420)
T ss_pred hhhhhhHHHHHHHHHHHHHHh
Confidence 777777777788888887643
No 13
>COG5650 Predicted integral membrane protein [Function unknown]
Probab=97.60 E-value=0.00021 Score=81.34 Aligned_cols=192 Identities=17% Similarity=0.192 Sum_probs=120.1
Q ss_pred cchHHhhHHHHHhccCCcccccccccccccccccCCCCchHHHHHHHhhhhhhhhCCCceEeccCCCCCCccceeeehhH
Q psy3043 49 GDYEAQRHWMEITRHLPVSTWYQNTTDNDLLYWGLDYPPLTAYHSLLCGYVAEYFVPDGVKLFTSHGHESYQHKYFMRLC 128 (731)
Q Consensus 49 gDfEaqRhWmeIT~~LPlseWY~n~ts~DL~yWgLDYPPLtAY~s~llG~iA~~~~p~~v~L~~srg~es~~~klFMR~T 128 (731)
+||+.--+|+|+-.+ .+|+.-++++- .=..-||+++-=..+.+. +..+.=|.-.++ -+.. .....-+=+.
T Consensus 103 ~~~p~~asw~~vh~~---~P~~r~~ms~a--f~y~~yPv~~~~y~~~~~-v~~~~Y~~L~~l---l~lP-~~~ef~~~f~ 172 (536)
T COG5650 103 LTFPYYASWLEVHGF---DPYVRYNMSKA--FRYMHYPVLGTPYQTGGY-VIYFSYPGLSAL---LFLP-VLFEFNPFFK 172 (536)
T ss_pred ccchhhhhheeecCC---Cccchhhhhhh--heeEeeccccCcccccce-EEEEEecchhhh---ccCc-cccccchhhh
Confidence 488888999988766 55665555531 123579998821111111 111111221111 0111 1122234455
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCcccchhhHHHHHHHHhccceEEEeceeecchhHHHHHHHHHHHHHHcCCchhHHHHH
Q psy3043 129 VLVSDVLIYIPALLCFFSRTENSSSQRVSQTFVLSVALIYPGLILIDHGHFQFNCISLGLFIWACHHLHLNNPVCTAILF 208 (731)
Q Consensus 129 VIvsDlli~~pAvl~~~~~~~~~~~~~~~~~~~~~liLlnPgLILIDHgHFQYNgvmLGLlLlSI~~L~~~r~llaAv~F 208 (731)
|.+--+.++.-.++++ .|+.... .+.+.+++...+|-+...|-.-| +.+..+++..+..+ ++|..+|++++
T Consensus 173 V~AF~~A~~~l~~i~~---~r~gl~~--~~~~~valv~as~~v~f~v~~~~--DtI~~ffla~a~v~--r~rP~lAGvl~ 243 (536)
T COG5650 173 VLAFLLALIWLLVIYF---IRKGLAG--SRVLDVALVAASPLVGFAVFTVF--DTIWAFFLAAALVC--RGRPKLAGVLI 243 (536)
T ss_pred HHHHHHHHHHHHHHHH---HHhcccc--cceeeeeeeeccceEEEEEecch--hHHHHHHHHHHHHh--cCCchHHHHHH
Confidence 5555554433222222 2221111 12245566677884444666666 88888887777777 99999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3043 209 SLSVNYKQMELYHALPFFFYYLGHVYHTTDIRLLLTLGSSVLITFILVWLPFLSV 263 (731)
Q Consensus 209 slaLnfKqM~LY~APafF~YLL~~c~~~~~i~rllkLg~vVl~tfal~flPFl~~ 263 (731)
+++..+||.+++++|++..++-+ +.+.+...+...+.++|++++.+||+..
T Consensus 244 Gls~a~K~~P~Ivl~pll~~~~k----eyg~~~a~~f~~~aa~t~lLvN~PfiI~ 294 (536)
T COG5650 244 GLSSAFKQIPLIVLPPLLYLIYK----EYGLRPAIKFIATAAITWLLVNLPFIIL 294 (536)
T ss_pred HHHHHhhcCchhhHHHHHHHHHH----hcCcchHHHHHHHHHHHHHHHcCceEEe
Confidence 99999999999999999877644 4578888999999999999999999964
No 14
>PF05208 ALG3: ALG3 protein; InterPro: IPR007873 The formation of N-glycosidic linkages of glycoproteins involves the ordered assembly of the common Glc3Man9GlcNAc2 core-oligosaccharide on the lipid carrier dolichyl pyrophosphate. Whereas early mannosylation steps occur on the cytoplasmic side of the endoplasmic reticulum with GDP-Man as donor, the final reactions from Man5GlcNAc2-PP-Dol to Man9GlcNAc2-PP-Dol on the lumenal side use Dol-P-Man []. The ALG3 gene encodes the Dol-P-Man:Man5GlcNAc2-PP-Dol mannosyltransferase.; GO: 0016758 transferase activity, transferring hexosyl groups, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=97.55 E-value=0.00076 Score=74.35 Aligned_cols=101 Identities=21% Similarity=0.250 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHHHHcCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy3043 182 NCISLGLFIWACHHLHLNNPVCTAILFSLSVNYKQMELYHALPFFFYYLGHVYHTTDIRLLLTLGSSVLITFILVWLPFL 261 (731)
Q Consensus 182 NgvmLGLlLlSI~~L~~~r~llaAv~FslaLnfKqM~LY~APafF~YLL~~c~~~~~i~rllkLg~vVl~tfal~flPFl 261 (731)
+|+...++..|+.++.++|+.+||++|++|++.|-=.|.|+|+++++++.. .++.+.+....+...+-+++=+||+
T Consensus 130 D~~a~~~~~~ai~~~~~~~w~~g~~~yS~avSIKMN~LL~~Pall~~~l~~----~g~~~~~~~l~v~~~vQvllg~PFL 205 (368)
T PF05208_consen 130 DCFAMLFLYAAILLFQRRRWLLGSLLYSLAVSIKMNALLFAPALLVLLLQS----LGLLKTLWYLAVCALVQVLLGLPFL 205 (368)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhHHH
Confidence 567777777899999999999999999999999999999999999888763 4688888888888889999999999
Q ss_pred hhhhHHHHHHHHcccccccchhhhh-hh
Q psy3043 262 SVSQLGHVMYRLFPIYRGLFEDKVA-NF 288 (731)
Q Consensus 262 ~~~ql~Qvi~RLFPf~RGLfedyvA-Nf 288 (731)
.. .-...++|-|=|+|-..+ ||- |+
T Consensus 206 ~~-~p~~Yl~~AFdf~R~Fl~-kWTVNw 231 (368)
T PF05208_consen 206 LT-NPWSYLSRAFDFSRQFLY-KWTVNW 231 (368)
T ss_pred Hh-CHHHHHHHhcccCceEEE-EEEEee
Confidence 74 455799999999998764 554 76
No 15
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=97.12 E-value=0.0058 Score=56.81 Aligned_cols=150 Identities=17% Similarity=0.194 Sum_probs=96.6
Q ss_pred CCCchHHHHHHHhhhhhhhhCCCceEeccCCCCCCccceeeehhHHHHHHHHHHHHHHHHHHhhcccCcccchhhHHHHH
Q psy3043 84 DYPPLTAYHSLLCGYVAEYFVPDGVKLFTSHGHESYQHKYFMRLCVLVSDVLIYIPALLCFFSRTENSSSQRVSQTFVLS 163 (731)
Q Consensus 84 DYPPLtAY~s~llG~iA~~~~p~~v~L~~srg~es~~~klFMR~TVIvsDlli~~pAvl~~~~~~~~~~~~~~~~~~~~~ 163 (731)
|=||++.|......++- ++ +..-.|+..++.-.+..+. +....+ +..+++ ......+
T Consensus 1 ~~pPl~~~~~~~~~~l~---G~---------------~~~~~~~~~~l~~~~~~~~-~y~i~r---~~~~~~-~a~~~~l 57 (159)
T PF13231_consen 1 DHPPLYFLLLALFFKLF---GD---------------SVWALRLFNILFSLLTLLL-IYLIAR---RLFGRR-AALIAAL 57 (159)
T ss_pred CCChHHHHHHHHHHHHh---Cc---------------CHHHHHHHHHHHHHHHHHH-HHHHHH---HHCCch-HHHHHHH
Confidence 56999999998877762 11 2234588777777665442 222222 222221 1235666
Q ss_pred HHHhccceEEEeceeecchhHHHHHHHHHHHHHHc----CC---chhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhcc
Q psy3043 164 VALIYPGLILIDHGHFQFNCISLGLFIWACHHLHL----NN---PVCTAILFSLSVNYKQMELYHALPFFFYYLGHVYHT 236 (731)
Q Consensus 164 liLlnPgLILIDHgHFQYNgvmLGLlLlSI~~L~~----~r---~llaAv~FslaLnfKqM~LY~APafF~YLL~~c~~~ 236 (731)
++.+.|..+.-.. .++-|..++.+.+++++.+.+ ++ .++++++++++...|...+.+.++++.|++.+ +
T Consensus 58 ~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k~~~~~~~~~~~~~l~~~---~ 133 (159)
T PF13231_consen 58 LLALSPMFIFYSA-SARPDMLLLFFFLLALYAFYRYIKSKKWRWWILAGLLLGLAFLTKYTFLLLIPALLLYLLLS---R 133 (159)
T ss_pred HHHHhHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h
Confidence 6777887765333 566688888888888877664 22 36899999999999999999999999887765 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q psy3043 237 TDIRLLLTLGSSVLITFILVWLPFL 261 (731)
Q Consensus 237 ~~i~rllkLg~vVl~tfal~flPFl 261 (731)
+..++.... ...++..++++.|.+
T Consensus 134 ~~~~~~~~~-~~~~~~~~~~~~p~l 157 (159)
T PF13231_consen 134 RRLKRKIFI-LIAVLIALLVFLPWL 157 (159)
T ss_pred HHHHhHHHH-HHHHHHHHHHHHHHH
Confidence 345552322 324445566666654
No 16
>PLN02841 GPI mannosyltransferase
Probab=96.73 E-value=0.024 Score=64.17 Aligned_cols=164 Identities=21% Similarity=0.274 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCcchHHhhHHHHHhccCCccccc---------cccccc-ccccccCCCCchHHH
Q psy3043 22 LLIVSGLLLRWLTSLHPYSGQGKPPMFGDYEAQRHWMEITRHLPVSTWY---------QNTTDN-DLLYWGLDYPPLTAY 91 (731)
Q Consensus 22 ~ii~~~~llR~~vsl~~ySG~~~pPm~gDfEaqRhWmeIT~~LPlseWY---------~n~ts~-DL~yWgLDYPPLtAY 91 (731)
.++++++++|+++.. |+ |-|.+.+|+. .|..+|. .++.|. |- =+--|+||-||
T Consensus 10 ~vll~a~~lRl~L~~--yg-----------~~~D~~~eVs--ytdidY~vftDga~lv~~G~SPY~r--~TYrytPLLa~ 72 (440)
T PLN02841 10 SLLLASALLRVALIV--YG-----------EWQDAHMEVR--YTDVDYLVFSDAAALVASGKSPFAR--DTYRYSPLLAL 72 (440)
T ss_pred HHHHHHHHHHHHHHH--HH-----------HHhccCcccc--ccccchHHHHHHHHHHHcCCCCCCC--CCCCcChHHHH
Confidence 467778899998877 32 2333334432 2333321 122221 11 23469999999
Q ss_pred HHHHhhhhhhhhCCCceEeccCCCCCCccceeeehhHHHHHHHHHHHHHHHHHHhhcccCcccchhhHHHHHHHHhccce
Q psy3043 92 HSLLCGYVAEYFVPDGVKLFTSHGHESYQHKYFMRLCVLVSDVLIYIPALLCFFSRTENSSSQRVSQTFVLSVALIYPGL 171 (731)
Q Consensus 92 ~s~llG~iA~~~~p~~v~L~~srg~es~~~klFMR~TVIvsDlli~~pAvl~~~~~~~~~~~~~~~~~~~~~liLlnPgL 171 (731)
.. -|+.. + +..|-+.-=+++|++.- .+.+ +..++.+.+........+++++||-.
T Consensus 73 Ll----------lPn~~-~----------~~~fgk~LF~l~Dll~a---~ll~-~il~~~~~~~~~~~~~a~~wL~NPlt 127 (440)
T PLN02841 73 LL----------VPNSL-L----------HRSWGKFLFSAADLLVG---LFIH-TILRLRGVPEKVCTWSVMVWLFNPFT 127 (440)
T ss_pred HH----------cchhh-h----------hhhHHHHHHHHHHHHHH---HHHH-HHHHHhCccccccHHHHHHHHhCcHH
Confidence 76 11110 0 12344666678999863 3222 22221111111123557788999999
Q ss_pred EEEecee-ecchhHHHHHHHHHHHHHHcCCchhHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy3043 172 ILIDHGH-FQFNCISLGLFIWACHHLHLNNPVCTAILFSLSVNYKQMELYHALPFFFYY 229 (731)
Q Consensus 172 ILIDHgH-FQYNgvmLGLlLlSI~~L~~~r~llaAv~FslaLnfKqM~LY~APafF~YL 229 (731)
|.|.-.. - +++.-.+++++++++.+|+...||+++++++.+|-=+++++|++..++
T Consensus 128 i~istrGSs--e~i~~~lvl~~L~~l~~g~~~~Aa~~lglavhfkiYPiIy~~Pi~l~l 184 (440)
T PLN02841 128 FTIGTRGNC--EPIVCAVILWILICLMNGRLLQAAFWYGLVVHFRIYPIIYALPIILVL 184 (440)
T ss_pred HHHhcccch--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 9864433 2 566677788999999999999999999999999999999999999888
No 17
>PF06728 PIG-U: GPI transamidase subunit PIG-U; InterPro: IPR009600 Many eukaryotic proteins are anchored to the cell surface via glycosylphosphatidylinositol (GPI), which is posttranslationally attached to the C terminus by GPI transamidase. The mammalian GPI transamidase is a complex of at least four subunits, GPI8, GAA1, PIG-S, and PIG-T. PIG-U is thought to represent a fifth subunit in this complex and may be involved in the recognition of either the GPI attachment signal or the lipid portion of GPI [].; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=96.39 E-value=0.087 Score=58.52 Aligned_cols=132 Identities=15% Similarity=0.115 Sum_probs=88.5
Q ss_pred CCCCchHHHHHHHhhhhhhhhCCCceEeccCCCCCCccceeeehhHHHHHHHHHHHHHHHHHHhhcccCc--------cc
Q psy3043 83 LDYPPLTAYHSLLCGYVAEYFVPDGVKLFTSHGHESYQHKYFMRLCVLVSDVLIYIPALLCFFSRTENSS--------SQ 154 (731)
Q Consensus 83 LDYPPLtAY~s~llG~iA~~~~p~~v~L~~srg~es~~~klFMR~TVIvsDlli~~pAvl~~~~~~~~~~--------~~ 154 (731)
..+||+.-+....+.+ ...++........+.-+++|+++.+- +....+...+.. +.
T Consensus 56 ~h~~PLlL~l~~~l~~---------------~~~~~~~~~~~~~llf~~~Dl~~A~~-L~~i~~~~~~~~~~~~~~~~~~ 119 (382)
T PF06728_consen 56 FHQPPLLLALFSFLLK---------------SSPNSPNSPILISLLFILVDLLIAWL-LYRIAKSYQKQESKRQKSPNEK 119 (382)
T ss_pred ccCcCHHHHHHHHHHh---------------cccccccchHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhcCchhc
Confidence 3689999887765543 11122234445566777999987541 222222221111 00
Q ss_pred chhhHHHHHHHHhccceEEEeceeecchhHHHHHHHHHHHHHHcCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q psy3043 155 RVSQTFVLSVALIYPGLILIDHGHFQFNCISLGLFIWACHHLHLNNPVCTAILFSLSVNYKQMELYHALPFFFYYLG 231 (731)
Q Consensus 155 ~~~~~~~~~liLlnPgLILIDHgHFQYNgvmLGLlLlSI~~L~~~r~llaAv~FslaLnfKqM~LY~APafF~YLL~ 231 (731)
.......+++|++||-.|+. .+--.=..+.-.+++.|++...+|+...++++.+++.-...-+++..|+...++..
T Consensus 120 ~~~~~lv~~~YLfNP~tIls-cva~ST~~f~nl~i~~sl~~a~~g~~~~s~i~lAlatylSlYpi~Ll~Plll~l~~ 195 (382)
T PF06728_consen 120 SSSPWLVAAFYLFNPLTILS-CVALSTTVFTNLFILLSLYFAVKGNVFLSAISLALATYLSLYPILLLPPLLLLLYS 195 (382)
T ss_pred ccchHHHHHHHHHCHHHHHH-HHhcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 12345788999999999982 22222255666778899999999999999999999999999999999999877765
No 18
>PRK13279 arnT 4-amino-4-deoxy-L-arabinose transferase; Provisional
Probab=96.38 E-value=0.34 Score=56.62 Aligned_cols=269 Identities=14% Similarity=0.133 Sum_probs=129.1
Q ss_pred HHHhccC-CcccccccccccccccccCCCCchHHHHHHHhhhhhhhhCCCceEeccCCCCCCccceeeehhHHHHHHHHH
Q psy3043 58 MEITRHL-PVSTWYQNTTDNDLLYWGLDYPPLTAYHSLLCGYVAEYFVPDGVKLFTSHGHESYQHKYFMRLCVLVSDVLI 136 (731)
Q Consensus 58 meIT~~L-PlseWY~n~ts~DL~yWgLDYPPLtAY~s~llG~iA~~~~p~~v~L~~srg~es~~~klFMR~TVIvsDlli 136 (731)
.|+..++ --.+|..- +-+|..|+ |-||+.-|.-.+.-++ +.. +..-+|+...++=++.
T Consensus 37 A~iareMl~sGdWlvP-~~~g~~y~--eKPPL~yWl~Als~~L---FG~---------------~~~a~RLpsaL~~~lt 95 (552)
T PRK13279 37 AEISREMLASGDWIVP-HFLGLRYF--EKPIAGYWINSIGQWL---FGD---------------NNFGVRFGSVFSTLLS 95 (552)
T ss_pred HHHHHHHHHhCCcCcc-ccCCCcCC--CCCcHHHHHHHHHHHH---cCC---------------CcHHHHHHHHHHHHHH
Confidence 3344443 22367432 22344444 9999998876664444 221 1234699888776654
Q ss_pred HHHHHHHHHhhcccCcccchhhHHHHHHHHhccceEEEeceeecchhHHHHHHHHH---HHHHHcC-----C---chhHH
Q psy3043 137 YIPALLCFFSRTENSSSQRVSQTFVLSVALIYPGLILIDHGHFQFNCISLGLFIWA---CHHLHLN-----N---PVCTA 205 (731)
Q Consensus 137 ~~pAvl~~~~~~~~~~~~~~~~~~~~~liLlnPgLILIDHgHFQYNgvmLGLlLlS---I~~L~~~-----r---~llaA 205 (731)
.+ .+..+.+...+ ++.....+.++++..|.+..+.|.+ .-+..+..+..+| .+...++ + +++.+
T Consensus 96 ~l-lvy~larrl~~---~r~~AllAaLIlls~~~v~~~g~~a-~~D~~l~~fi~lal~~f~~~~~~~~~~~~~~~~lllG 170 (552)
T PRK13279 96 AL-LVYWLALRLWR---DRRTALLAALIYLSLFLVYGIGTYA-VLDPMITLWLTAAMCSFWLALQAQTRRGKIGGYLLLG 170 (552)
T ss_pred HH-HHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHH
Confidence 32 12222222211 1111234555566677666533332 1133333344444 3333332 1 34556
Q ss_pred HHHHHHhhhhhhHHHHHHHHH--HHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHcccccccchh
Q psy3043 206 ILFSLSVNYKQMELYHALPFF--FYYLGHVYHTTDIRLLLTLGSSVLITFILVWLPFLSVSQLGHVMYRLFPIYRGLFED 283 (731)
Q Consensus 206 v~FslaLnfKqM~LY~APafF--~YLL~~c~~~~~i~rllkLg~vVl~tfal~flPFl~~~ql~Qvi~RLFPf~RGLfed 283 (731)
++.++++..|=......|... .+++. ++.++++...+...++.++++.+|+...- ..+ . .|
T Consensus 171 la~Glg~LTKG~ial~lP~l~il~~ll~----~rr~~~ll~~~~l~llvalli~lPW~lai-----~~~-~-------pd 233 (552)
T PRK13279 171 LACGMGFMTKGFLALAVPVISVLPWVIW----QKRWKELLIYGPLAVLSAVLVSLPWALAI-----AQR-E-------PD 233 (552)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHh-C-------ch
Confidence 778899999976555666332 34333 23455655555555666677778887530 000 1 24
Q ss_pred hhhhhhhhhhHHHHHHhhcchhhHHH-HHHHHHHHH------Hhhhh-hhhcccC---chhhHHHHHHHHhhhhhhcccc
Q psy3043 284 KVANFWCSANVVYKFTIYMTNDQMAL-MCLCTTLLA------ILPSC-VSVFRKP---NVVKFQQSLIVVSLGFFLFSFH 352 (731)
Q Consensus 284 yvANfWc~~n~~~K~~~~~~~~~l~~-~slilTLla------~lPs~-v~L~~~P---s~~~Fl~al~~~slsFFLFSfq 352 (731)
++.+||-. ..+.|...-..+..-+. .=+...+.+ .+|.. ...|+++ ....|+.+-+...+.||.++=.
T Consensus 234 f~~~ff~~-e~i~Rf~~~~~~h~~p~~yYl~~ll~~~lPW~~llp~al~~~w~~r~~~~~~~fll~W~~~~llfFSis~~ 312 (552)
T PRK13279 234 FWHYFFWV-EHIQRFAEDDAQHKAPFWYYLPVLIAGSLPWLGLLPGALKQGWRERKKHPGTFYLLLWVVMPLLFFSIAKG 312 (552)
T ss_pred HHHHHHHH-HHHHHHhcccccCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHheeeeeCC
Confidence 55443221 11222111000000000 000011111 22222 2335443 1334666666667777877777
Q ss_pred cchhhhhhhhhhhhhccC
Q psy3043 353 VHEKSILLVSTPVILYLP 370 (731)
Q Consensus 353 VHEKsILLpllPlsLL~~ 370 (731)
--+-+||....|+++++.
T Consensus 313 Kl~~YiLP~~pplAlL~A 330 (552)
T PRK13279 313 KLPTYILPCFAPLAILMA 330 (552)
T ss_pred CcchhHHHHHHHHHHHHH
Confidence 777787766778877764
No 19
>KOG2762|consensus
Probab=96.11 E-value=0.014 Score=64.22 Aligned_cols=100 Identities=27% Similarity=0.280 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHHHHcCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhcchh-HHHHHHHHHHHHHHHHHHHHHH
Q psy3043 182 NCISLGLFIWACHHLHLNNPVCTAILFSLSVNYKQMELYHALPFFFYYLGHVYHTTD-IRLLLTLGSSVLITFILVWLPF 260 (731)
Q Consensus 182 NgvmLGLlLlSI~~L~~~r~llaAv~FslaLnfKqM~LY~APafF~YLL~~c~~~~~-i~rllkLg~vVl~tfal~flPF 260 (731)
+++-.-++-.++....++|+++|+++|++|++.|-=.|.|||++++.+|.. .+ ++.+..+++. ++.-.++=+||
T Consensus 158 D~fa~lll~~~i~~~l~qkw~~gs~~fSlAvSVKMNvLLyaPall~~lL~~----~~~~~tl~~L~v~-~~vQilvg~PF 232 (429)
T KOG2762|consen 158 DPFAMLLLYVAILLFLKQKWLVGSIFFSLAVSVKMNVLLYAPALLLLLLQN----LGPIGTLLHLAVC-ILVQILVGLPF 232 (429)
T ss_pred chHHHHHHHHHHHHHHHHHHHhHhhhheeehhhhhhhHHHHHHHHHHHHHh----ccHHHHHHHHHHH-HHHHHHHcCch
Confidence 466667777888899999999999999999999999999999999988774 23 3344444433 34445666899
Q ss_pred hhhhhHHHHHHHHcccccccchhhhh-hh
Q psy3043 261 LSVSQLGHVMYRLFPIYRGLFEDKVA-NF 288 (731)
Q Consensus 261 l~~~ql~Qvi~RLFPf~RGLfedyvA-Nf 288 (731)
+. ....+.+++-|-++|- |+-||. |+
T Consensus 233 Ll-~~p~~Yl~~aFDlGR~-F~~kWtVNw 259 (429)
T KOG2762|consen 233 LL-YFPSSYLTQAFDLGRV-FMYKWTVNW 259 (429)
T ss_pred Hh-hChHHHHhhhcccccc-eeEEeeeee
Confidence 96 3567799999999995 456776 75
No 20
>COG1807 ArnT 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
Probab=95.91 E-value=0.91 Score=51.93 Aligned_cols=178 Identities=15% Similarity=0.072 Sum_probs=105.9
Q ss_pred chHHhhHHHHHhccCCcccccccccccccccccCCCCchHHHHHHHhhhhhhhhCCCceEeccCCCCCCccceeeehhHH
Q psy3043 50 DYEAQRHWMEITRHLPVSTWYQNTTDNDLLYWGLDYPPLTAYHSLLCGYVAEYFVPDGVKLFTSHGHESYQHKYFMRLCV 129 (731)
Q Consensus 50 DfEaqRhWmeIT~~LPlseWY~n~ts~DL~yWgLDYPPLtAY~s~llG~iA~~~~p~~v~L~~srg~es~~~klFMR~TV 129 (731)
..|+.|+.+|...+ +..++.+-. +.|.||+..|...+.-++-. .+-.-.|+..
T Consensus 38 ~~~~~~~m~~s~~w--~~~~~~g~~-------~~~kPPl~~Wl~a~~~~lfG------------------~~~~~~rl~~ 90 (535)
T COG1807 38 YAEIAREMLESGDW--FTPQLLGLP-------YFEKPPLVYWLQALSYLLFG------------------VNEWSARLPS 90 (535)
T ss_pred HHHHHHHHHHcCCC--cceeeCCcc-------ccCCCcHHHHHHHHHHHHcC------------------cchHHHHHHH
Confidence 48899998876655 333333222 24999999998886555521 0223358888
Q ss_pred HHHHHHHHHHHHHHHHhhcccCcccchhhHHHHHHHHhccceEEEeceeecchhHHHHHHHHHHHHHHcCCc--------
Q psy3043 130 LVSDVLIYIPALLCFFSRTENSSSQRVSQTFVLSVALIYPGLILIDHGHFQFNCISLGLFIWACHHLHLNNP-------- 201 (731)
Q Consensus 130 IvsDlli~~pAvl~~~~~~~~~~~~~~~~~~~~~liLlnPgLILIDHgHFQYNgvmLGLlLlSI~~L~~~r~-------- 201 (731)
.++=.+ ...++....+.+.+. .....+.+++++.|.++.....+- =|..+..++.+|++++.+.+.
T Consensus 91 ~l~~~~-~~~l~y~l~k~l~~~----~~a~~aali~~~~p~~~~~~~~~~-~D~~l~~f~~la~~~~~~~~~~~~~~~~~ 164 (535)
T COG1807 91 ALAGAL-TALLVYWLAKRLFGR----LAALLAALILLLTPLFFLIGRLAL-LDAALAFFLTLALALLYLALRARGKLKWL 164 (535)
T ss_pred HHHHHH-HHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHHHHHHhcCcccHH
Confidence 877763 333454444444332 112356777888898887544431 356777777777776654322
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3043 202 VCTAILFSLSVNYKQMELYHALPFFFYYLGHVYHTTDIRLLLTLGSSVLITFILVWLPFLS 262 (731)
Q Consensus 202 llaAv~FslaLnfKqM~LY~APafF~YLL~~c~~~~~i~rllkLg~vVl~tfal~flPFl~ 262 (731)
+...+..+++.+.|-...++.|+++..++. +.+.+...|... ....++.+++..+|+..
T Consensus 165 l~~gl~lGL~~ltKg~~~~~l~~~~~~~l~-~~~~~~~~~~~~-~~~g~~l~~l~~~pW~~ 223 (535)
T COG1807 165 LLLGLALGLGFLTKGPGALLLPLILLLLLL-APRLRRLLRDLR-LWLGLLLGLLPVLPWLL 223 (535)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHH-HHhHHHHHHHHH-HHHHHHHHHHHHhhHHH
Confidence 567889999999999999999953333322 111222223332 33334445566677764
No 21
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=95.63 E-value=0.42 Score=56.47 Aligned_cols=151 Identities=19% Similarity=0.132 Sum_probs=77.1
Q ss_pred CCchHHHHHHHhhhhhhhhCCCceEeccCCCCCCccceeeehhHHHHHHHHHHHHHHHHH--HhhcccCcccchhhHHHH
Q psy3043 85 YPPLTAYHSLLCGYVAEYFVPDGVKLFTSHGHESYQHKYFMRLCVLVSDVLIYIPALLCF--FSRTENSSSQRVSQTFVL 162 (731)
Q Consensus 85 YPPLtAY~s~llG~iA~~~~p~~v~L~~srg~es~~~klFMR~TVIvsDlli~~pAvl~~--~~~~~~~~~~~~~~~~~~ 162 (731)
||||+.|.-.+++.+.. | . . ....++++++=++ .|+..| .+...+ +....+..
T Consensus 4 YpPL~yyl~a~l~~l~g--~-~--------------~-~Ay~l~~~L~~~l---~~~~~Y~~~R~~~~----~~~A~l~a 58 (616)
T PF10131_consen 4 YPPLPYYLGALLSLLFG--N-P--------------I-VAYKLFIFLAFFL---GGLGMYFLGRRLGR----RKAAILAA 58 (616)
T ss_pred CCcHHHHHHHHHHHHhC--C-H--------------H-HHHHHHHHHHHHH---HHHHHHHHHHHhcc----hhHHHHHH
Confidence 99999999999998841 1 1 0 1123444444222 233222 222222 22234677
Q ss_pred HHHHhccceEEEeceeecchhH----HHHHHHHHHHHHHcCCc----hhHHHHHHHHhhhhh--hHHHHHHHHHHHHHh-
Q psy3043 163 SVALIYPGLILIDHGHFQFNCI----SLGLFIWACHHLHLNNP----VCTAILFSLSVNYKQ--MELYHALPFFFYYLG- 231 (731)
Q Consensus 163 ~liLlnPgLILIDHgHFQYNgv----mLGLlLlSI~~L~~~r~----llaAv~FslaLnfKq--M~LY~APafF~YLL~- 231 (731)
+++++.|..+...+.+..+=.. .+=+++++...+.+++. +..|+.+++.+.- | ..+++..+++.+++-
T Consensus 59 iLyl~~py~l~~~y~rgni~e~lA~~llPlvll~~~~~~~~~~~r~~~~lAl~~all~ls-Hll~~ll~~l~~~~~lLi~ 137 (616)
T PF10131_consen 59 ILYLFSPYHLRNIYWRGNIPETLAFALLPLVLLFLYRFIKKRKYRYWILLALSMALLALS-HLLSTLLTGLALIVFLLIY 137 (616)
T ss_pred HHHHHhHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence 8888899887665555533222 22234455555554432 4556666654444 5 666666777766663
Q ss_pred hhhcchhHHHHHHHHHHHHHHH--HHHHHHHh
Q psy3043 232 HVYHTTDIRLLLTLGSSVLITF--ILVWLPFL 261 (731)
Q Consensus 232 ~c~~~~~i~rllkLg~vVl~tf--al~flPFl 261 (731)
.-.+++....+.++..+++... +.-++|++
T Consensus 138 ~~~~~~~~~~l~~~~a~~lgl~lsafwL~P~l 169 (616)
T PF10131_consen 138 LIQRKRFKRNLIKLVAIVLGLLLSAFWLLPAL 169 (616)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233222233333322222222 44567887
No 22
>PF05007 Mannosyl_trans: Mannosyltransferase (PIG-M); InterPro: IPR007704 PIG-M has a DXD motif. The DXD motif is found in many glycosyltransferases that utilise nucleotide sugars. It is thought that the motif is involved in the binding of a manganese ion that is required for association of the enzymes with nucleotide sugar substrates [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=95.45 E-value=0.045 Score=58.28 Aligned_cols=79 Identities=23% Similarity=0.253 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHHHHcCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhc--chhH-----HHHHHHHHHHHHHHH
Q psy3043 182 NCISLGLFIWACHHLHLNNPVCTAILFSLSVNYKQMELYHALPFFFYYLGHVYH--TTDI-----RLLLTLGSSVLITFI 254 (731)
Q Consensus 182 NgvmLGLlLlSI~~L~~~r~llaAv~FslaLnfKqM~LY~APafF~YLL~~c~~--~~~i-----~rllkLg~vVl~tfa 254 (731)
|+++-.+.+++++++.++|...||+++++++.+|--++.|+|++..|+..+..+ +... ++-++++++.++||+
T Consensus 8 Esl~~~lVl~~l~~l~~~~~~~Aa~~lGlaVHfKIYPiIY~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~f~~~s~~tf~ 87 (259)
T PF05007_consen 8 ESLLCFLVLLTLYFLLKGRWFLAAILLGLAVHFKIYPIIYALPILLYLSNRKNGSFRSRLKRLLNPNRLKFGLISAITFA 87 (259)
T ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHhhHHHHhhhccHHHHHHHHHHHhccccchHHHHHHHhcCHhHhhhHHHHHHHHH
Confidence 678888899999999999999999999999999999999999999998654321 0011 234556776666665
Q ss_pred HHHHHH
Q psy3043 255 LVWLPF 260 (731)
Q Consensus 255 l~flPF 260 (731)
++-+=+
T Consensus 88 ~l~~~~ 93 (259)
T PF05007_consen 88 ALTLLM 93 (259)
T ss_pred HHHHHH
Confidence 554433
No 23
>PF02366 PMT: Dolichyl-phosphate-mannose-protein mannosyltransferase ; InterPro: IPR003342 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Dolichyl-phosphate-mannose-protein mannosyltransferase proteins 2.4.1.109 from EC belong to the glycosyltransferase family 39 (GT39 from CAZY) and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. The transfer of mannose to seryl and threonyl residues of secretory proteins is catalyzed by a family of protein mannosyltransferases in Saccharomyces cerevisiae coded for by seven genes (PMT1-7). Protein O-glycosylation is essential for cell wall rigidity and cell integrity and this protein modification is vital for S. cerevisiae [].; GO: 0000030 mannosyltransferase activity, 0006493 protein O-linked glycosylation, 0016020 membrane
Probab=95.32 E-value=0.14 Score=52.50 Aligned_cols=172 Identities=21% Similarity=0.197 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCcchHHhhHHHHHhcc----CCcccccccccccccccccCCCCchHHHHHHHhhh
Q psy3043 23 LIVSGLLLRWLTSLHPYSGQGKPPMFGDYEAQRHWMEITRH----LPVSTWYQNTTDNDLLYWGLDYPPLTAYHSLLCGY 98 (731)
Q Consensus 23 ii~~~~llR~~vsl~~ySG~~~pPm~gDfEaqRhWmeIT~~----LPlseWY~n~ts~DL~yWgLDYPPLtAY~s~llG~ 98 (731)
+.++++++|...--.|=++--+.+.|+++|.. -+|.+.. =|..+...+ ...|-.+|||..-|..-.--+
T Consensus 3 ~~~~~~~~~~~~l~~p~~~v~de~~~~~~~~~--Y~~~~~~~~~~p~~~~~~~~-----~~~~~~~~p~~~~~~~~~~~~ 75 (245)
T PF02366_consen 3 LTLLSLLLRFWLLSLPNDGVFDEVHFDEFANR--YAEHTRFMDEHPPLGKLLFA-----LGAYLFGYPPLYYWISAIGFY 75 (245)
T ss_pred HHHHHHHHHHHHHhcchhhhhccccccHHHHH--HHhcceeeccCCcccchhhh-----hhhHHhcccchhhHHHhhhhh
Confidence 44566777777766666776777777777431 2233322 244443332 233566888877664322111
Q ss_pred hhhhhCCCceEeccCCCCCCccceeeehhHHHHHHHHHHHHHHHHHHhhcccCcccchhhHHHHHHHHhccceEEEecee
Q psy3043 99 VAEYFVPDGVKLFTSHGHESYQHKYFMRLCVLVSDVLIYIPALLCFFSRTENSSSQRVSQTFVLSVALIYPGLILIDHGH 178 (731)
Q Consensus 99 iA~~~~p~~v~L~~srg~es~~~klFMR~TVIvsDlli~~pAvl~~~~~~~~~~~~~~~~~~~~~liLlnPgLILIDHgH 178 (731)
. .+.....-+|....++-.++.. .+....+...+ ++.....++++++++|.++.... .
T Consensus 76 ~-----------------~~~~~~~~~R~~~~l~~~~~~~-l~y~~~~~~~~---s~~~al~aa~l~~~~~~~~~~sr-~ 133 (245)
T PF02366_consen 76 Y-----------------FGSVNYWAARLPSALFGALTVP-LVYLILRRLFG---SRRAALLAALLLALDPSLIVQSR-Y 133 (245)
T ss_pred h-----------------hhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcC---ChhHHHHHHHHHHHhhHHHHHHH-H
Confidence 1 1112445689998888877532 23223333222 12223456677788888775222 1
Q ss_pred ecchhHHHHHHHHHHHHHHcC------------CchhHHHHHHHHhhhhhhHHHHHH
Q psy3043 179 FQFNCISLGLFIWACHHLHLN------------NPVCTAILFSLSVNYKQMELYHAL 223 (731)
Q Consensus 179 FQYNgvmLGLlLlSI~~L~~~------------r~llaAv~FslaLnfKqM~LY~AP 223 (731)
--=++.++.+.++|++++.+. +.++++++.++++..|...++..+
T Consensus 134 ~~~D~~l~~f~~la~~~~~~~~~~~~~~~~~~~~~~l~gi~lGla~~~K~~~~~~~~ 190 (245)
T PF02366_consen 134 ALLDSILLFFILLAIYCLLRWYRYQPFRRKWWLWLLLAGIALGLAILTKGPGLLLVL 190 (245)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 223667777778888777665 247789999999999999887653
No 24
>PRK13375 pimE mannosyltransferase; Provisional
Probab=93.01 E-value=20 Score=40.94 Aligned_cols=195 Identities=12% Similarity=0.068 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCcchHHhhHHHHHh-ccCCcccccccccccccccccCCCCchHHHHHHHhhhhhh
Q psy3043 23 LIVSGLLLRWLTSLHPYSGQGKPPMFGDYEAQRHWMEIT-RHLPVSTWYQNTTDNDLLYWGLDYPPLTAYHSLLCGYVAE 101 (731)
Q Consensus 23 ii~~~~llR~~vsl~~ySG~~~pPm~gDfEaqRhWmeIT-~~LPlseWY~n~ts~DL~yWgLDYPPLtAY~s~llG~iA~ 101 (731)
+++++++.|.+..+ .+.+ +.-+-|+|+-|.=-+.- +--++.+.=+.+...|.+ -.--|||+.|-...=++.+
T Consensus 23 ~~~~~~~~~~~~~~---~~~~-~~~~vDl~VYr~g~~~~~~g~~LYd~~~~~~~~~~~-LpFtYPPfaallf~PLalL-- 95 (409)
T PRK13375 23 LLVLSVAARLAWTY---LAPN-GANFVDLHVYVGGAAALDHPGTLYDYVYADQTPDFP-LPFTYPPFAALVFYPLHLL-- 95 (409)
T ss_pred HHHHHHHHHHHHhc---ccCC-CCCCccHHHHHHhHHHHccCCcccCccccccCCCCC-CCCCCCcHHHHHHHHHHhc--
Confidence 66677888887553 2211 12246999877633222 123555442221111211 2346999999998888865
Q ss_pred hhCCCceEeccCCCCCCccceeeehhHHHHHHHHHHHHHHHHHHhhcccCcccchhhHHH--HHHHHhccceEEEecee-
Q psy3043 102 YFVPDGVKLFTSHGHESYQHKYFMRLCVLVSDVLIYIPALLCFFSRTENSSSQRVSQTFV--LSVALIYPGLILIDHGH- 178 (731)
Q Consensus 102 ~~~p~~v~L~~srg~es~~~klFMR~TVIvsDlli~~pAvl~~~~~~~~~~~~~~~~~~~--~~liLlnPgLILIDHgH- 178 (731)
+.. ..+....+.-+..++-.+....+........+ +... ....+..+.+- ++..
T Consensus 96 --p~~-----------------~a~~l~~~~~~~al~~~v~~~~r~l~~~~~~~--~~a~~~~~~~l~~ePv~--~tl~~ 152 (409)
T PRK13375 96 --PFG-----------------VVAFLWQLATIAALYGVVRISQRLLGGGAGGH--RVAMLWTAVGIWLEPVR--STFDY 152 (409)
T ss_pred --cHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHhcccccch--hHHHHHHHHHHHhHHHH--HHHHh
Confidence 111 01222222223322211111112222111111 1111 11112223321 3333
Q ss_pred ecchhHHHHHHHHHHHHHHcCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHH
Q psy3043 179 FQFNCISLGLFIWACHHLHLNNPVCTAILFSLSVNYKQMELYHALPFFFYYLGHVYHTTDIRLLLTLGSSVLITFILVWL 258 (731)
Q Consensus 179 FQYNgvmLGLlLlSI~~L~~~r~llaAv~FslaLnfKqM~LY~APafF~YLL~~c~~~~~i~rllkLg~vVl~tfal~fl 258 (731)
.|-|.+++.++++. +.++|...++++..++.+.|..+..+.+ |+|. ++.++-+..-+++.+.+.++.|.
T Consensus 153 GQIN~lL~~Lv~~d---ll~~r~~~aGvliGLAaaIKlTPavf~l----~lL~----~RrWra~~~A~~t~~~~~~lg~~ 221 (409)
T PRK13375 153 GQINVFLMLAVLYA---VYSSRWWLSGLLVGLAAGVKLTPAITGL----YFLG----ARRWAAAAFSAVVFLATVGVSYL 221 (409)
T ss_pred CcHHHHHHHHHHHH---HhcCCccHHHHHHHHHHHhhhhhHHHHH----HHHH----hCHHHHHHHHHHHHHHHHHHHHH
Confidence 46688888777755 3478888999999999999999988543 2332 23455555444444444444443
No 25
>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains a family of various integral membrane proteins with no known function.
Probab=92.68 E-value=8.7 Score=43.56 Aligned_cols=105 Identities=16% Similarity=0.095 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcccCcccchhhHHHHHHHHhccceEEEeceeecchhHHHHHHHHHHHHHHcCCchhHH
Q psy3043 126 RLCVLVSDVLIYIPALLCFFSRTENSSSQRVSQTFVLSVALIYPGLILIDHGHFQFNCISLGLFIWACHHLHLNNPVCTA 205 (731)
Q Consensus 126 R~TVIvsDlli~~pAvl~~~~~~~~~~~~~~~~~~~~~liLlnPgLILIDHgHFQYNgvmLGLlLlSI~~L~~~r~llaA 205 (731)
+.-.++=.+++..+++..+...-+. ..++.......+.+++||++.=+.-.-|.=+++..-+++++++++.++|.....
T Consensus 60 ~tLli~Qal~la~~~~pl~~lar~~-~~~~~~a~~~~~~ylL~p~~~~~~~~dFH~~~~avPll~~~~~~~~~~r~~~~~ 138 (449)
T PF09852_consen 60 LTLLIVQALLLALGAIPLYRLARRR-LLSRRLALLIALAYLLSPGLQGANLFDFHPVAFAVPLLLWALYALERRRWRLFI 138 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhHHHHhhhhCCCcHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 3344555566666655544332222 212222346678899999998764445555999988999999999999999999
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHh
Q psy3043 206 ILFSLSVNYKQMELYHALPFFFYYLG 231 (731)
Q Consensus 206 v~FslaLnfKqM~LY~APafF~YLL~ 231 (731)
++..+++..|--.-.+.-.+..+++-
T Consensus 139 ~~~ll~llvKEd~~l~v~~~gl~~~~ 164 (449)
T PF09852_consen 139 LWALLLLLVKEDLGLTVAGIGLYLLL 164 (449)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999996555445555555544
No 26
>KOG3893|consensus
Probab=92.09 E-value=0.46 Score=52.35 Aligned_cols=204 Identities=17% Similarity=0.164 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHhcc-CCCCCCCCCCCCcchHHh--hHHHHHhccCCcccccccccccccccccCCCCchHHHHHHH
Q psy3043 19 ISFLLIVSGLLLRWLTSL-HPYSGQGKPPMFGDYEAQ--RHWMEITRHLPVSTWYQNTTDNDLLYWGLDYPPLTAYHSLL 95 (731)
Q Consensus 19 ~~~~ii~~~~llR~~vsl-~~ySG~~~pPm~gDfEaq--RhWmeIT~~LPlseWY~n~ts~DL~yWgLDYPPLtAY~s~l 95 (731)
.....++++++.|+++-. +-.......=-|||.+-| -+ -++--.++.|.= .=-|--|-|.-||..
T Consensus 20 ~~~~~llva~l~Ri~Lv~Yg~~hD~~~~v~~TDIDY~VftD---------aar~Vs~G~sPf-~R~TYRYtP~la~ll-- 87 (405)
T KOG3893|consen 20 SFFTHLLVAFLARIALVFYGQLHDRQSAVPYTDIDYKVFTD---------AARQVSAGDSPF-ARATYRYTPILAWLL-- 87 (405)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhccCCccccceeEeeh---------hhHHhhcCCChh-hhhhhcccHHHHHHh--
Confidence 344578899999997654 222222223346654322 11 111112222210 002336888877742
Q ss_pred hhhhhhhhCCCceEeccCCCCCCccceeeehhHHHHHHHHHHHHHHHHHHhhcccCc-ccchhhHHHHHHHHhccceEEE
Q psy3043 96 CGYVAEYFVPDGVKLFTSHGHESYQHKYFMRLCVLVSDVLIYIPALLCFFSRTENSS-SQRVSQTFVLSVALIYPGLILI 174 (731)
Q Consensus 96 lG~iA~~~~p~~v~L~~srg~es~~~klFMR~TVIvsDlli~~pAvl~~~~~~~~~~-~~~~~~~~~~~liLlnPgLILI 174 (731)
-|.- -++++ |-+.--.++|+++ |.+.+ |.+..++ +++. .-+...+-++||-..+|
T Consensus 88 --------~pni------~~~p~-----~GK~Lf~~~Dll~---a~L~~-kLl~~~~i~~~~-a~~~~~fWLlNPl~aiI 143 (405)
T KOG3893|consen 88 --------TPNI------YLFPA-----WGKLLFAIFDLLI---ATLIY-KLLHMRSISRKQ-ALIYASFWLLNPLTAII 143 (405)
T ss_pred --------ccce------ecCch-----HHHHHHHHHHHHH---HHHHH-HHHhhhhcchhh-hhHhhhhhhcCchheee
Confidence 2221 12222 3466678899986 34333 3332222 1111 12445566789999887
Q ss_pred e-ceeecchhHHHHHHHHHHHHHHcCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHhh----hhcchhHHHH------H
Q psy3043 175 D-HGHFQFNCISLGLFIWACHHLHLNNPVCTAILFSLSVNYKQMELYHALPFFFYYLGH----VYHTTDIRLL------L 243 (731)
Q Consensus 175 D-HgHFQYNgvmLGLlLlSI~~L~~~r~llaAv~FslaLnfKqM~LY~APafF~YLL~~----c~~~~~i~rl------l 243 (731)
. -|-= +|+.-.+.++-++++.+++...||++..+++.+|--++.|.|+++.++.-. |.. ..+..+ +
T Consensus 144 StRGNa--esi~~~lvi~~lyllqK~~v~~A~l~~GlaIh~KIYPliY~l~i~l~ls~~~~~s~~~-~~l~sLL~~~k~l 220 (405)
T KOG3893|consen 144 STRGNA--ESIVAFLVILTLYLLQKSEVFLAGLAHGLAIHLKIYPLIYSLAIYLSLSTRKTQSTPL-DKLCSLLSINKQL 220 (405)
T ss_pred ecCCch--HHHHHHHHHHHHHHHHHhHHHHHHHHhhheeeeEechHHhhhhhheEEecCCCCCcHH-HHHHHHhccccch
Confidence 3 3433 889999999999999999999999999999999999999999999887532 221 112222 4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy3043 244 TLGSSVLITFILVWLPFL 261 (731)
Q Consensus 244 kLg~vVl~tfal~flPFl 261 (731)
++.++.+.+|+.+-.-|.
T Consensus 221 ~~~~~tLtsf~~~~~~fY 238 (405)
T KOG3893|consen 221 CLILGTLTSFAACTWTFY 238 (405)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 455778888888855554
No 27
>PF04188 Mannosyl_trans2: Mannosyltransferase (PIG-V)); InterPro: IPR007315 This is a family of eukaryotic ER membrane proteins that are involved in the synthesis of glycosylphosphatidylinositol (GPI), a glycolipid that anchors many proteins to the eukaryotic cell surface. Proteins in this family are involved in transferring the second mannose in the biosynthetic pathway of GPI [], [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=92.04 E-value=1.6 Score=49.62 Aligned_cols=101 Identities=20% Similarity=0.188 Sum_probs=75.8
Q ss_pred HHHHHHHhccceEEEeceeecchhHHHHHHHHHHHHHHcCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhc----
Q psy3043 160 FVLSVALIYPGLILIDHGHFQFNCISLGLFIWACHHLHLNNPVCTAILFSLSVNYKQMELYHALPFFFYYLGHVYH---- 235 (731)
Q Consensus 160 ~~~~liLlnPgLILIDHgHFQYNgvmLGLlLlSI~~L~~~r~llaAv~FslaLnfKqM~LY~APafF~YLL~~c~~---- 235 (731)
.+.++++++|+=+.---.-= |+....+.+++++.+.+++...++++|+++-...--++..+..+...+++..+.
T Consensus 146 ~a~ll~~~~PasiF~sa~Ys--Eslf~~lsf~gl~~~~~~~~~~a~~~~~la~~~RsnGll~~~~~~~~~l~~~~~~l~~ 223 (443)
T PF04188_consen 146 LAALLFIFSPASIFLSAPYS--ESLFALLSFAGLYLLERGRWWLAGLLFALATLTRSNGLLLAGFFAYELLGIYYLDLRQ 223 (443)
T ss_pred HHHHHHHHccHHHHhhcCcc--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677788998654222222 788888899999999999999999999999999999999998888888876432
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3043 236 TTDIRLLLTLGSSVLITFILVWLPFLS 262 (731)
Q Consensus 236 ~~~i~rllkLg~vVl~tfal~flPFl~ 262 (731)
++..++.++..+..++..+++.+||+.
T Consensus 224 ~~~~~~~~~~~~~~~l~~~~i~~pf~~ 250 (443)
T PF04188_consen 224 LRRQRRLVRALISAILSGLLIFLPFVL 250 (443)
T ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 222334455445555666778899985
No 28
>PHA01514 O-antigen conversion protein C
Probab=90.62 E-value=30 Score=40.44 Aligned_cols=125 Identities=14% Similarity=0.194 Sum_probs=69.3
Q ss_pred HHHHHHHhccceEEEeceeecchhHHHHHHHHHHH----HHHcCCc---hhHHHHHHHHhhhhhhHHHHHHHH-HHHHHh
Q psy3043 160 FVLSVALIYPGLILIDHGHFQFNCISLGLFIWACH----HLHLNNP---VCTAILFSLSVNYKQMELYHALPF-FFYYLG 231 (731)
Q Consensus 160 ~~~~liLlnPgLILIDHgHFQYNgvmLGLlLlSI~----~L~~~r~---llaAv~FslaLnfKqM~LY~APaf-F~YLL~ 231 (731)
...+.++.||-++ -|..|+|+|...++.+.... +..+++. +.++++=.++++.=|-++-.-..+ .+..++
T Consensus 103 L~~~~l~~NPffL--qNLSYrfDsl~Malsv~lsi~~~~l~~~~~~~~~~~~~il~~~~l~lYQ~s~nIfi~l~~~~il~ 180 (485)
T PHA01514 103 LCFMMILANPFFI--ENLSYRYDSLTMCMSVAISIISSYVAYQYKPINIIISSILTIAFLSLYQAALNTYAIFLLAFIIS 180 (485)
T ss_pred HHHHHHHhCHHHH--hhhhhccCcHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667799877 89999999987777543322 3234433 466666677888888777655443 333444
Q ss_pred hhhcchhHHHHHHH---HHHHHHHHHHHHH----HHhhhhhHHHHHHHHcccccccchhhhh
Q psy3043 232 HVYHTTDIRLLLTL---GSSVLITFILVWL----PFLSVSQLGHVMYRLFPIYRGLFEDKVA 286 (731)
Q Consensus 232 ~c~~~~~i~rllkL---g~vVl~tfal~fl----PFl~~~ql~Qvi~RLFPf~RGLfedyvA 286 (731)
.+.++..++...+- .+++.++..++.. |.+..+.-.+-=+++-|++.|+++.-++
T Consensus 181 ~~~~~~~~~~i~k~~~~~~~~~i~~~llY~~iI~~~~~~~~y~~~hs~ii~~~~~l~~~l~~ 242 (485)
T PHA01514 181 DVVKKNSISNITKNTASSVAGLIVGYFAYSYFIAKRLVTGSYNIEHSKIIEINSSLFEGIIS 242 (485)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccCCchhhHHHHHH
Confidence 45554334333332 1222222222222 4442222222345677788888764444
No 29
>TIGR03663 conserved hypothetical protein TIGR03663. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with Pfam family pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.
Probab=85.40 E-value=23 Score=40.54 Aligned_cols=96 Identities=14% Similarity=0.094 Sum_probs=56.3
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHhhcccCcccchhhHHHHHHHHhccceEEEeceeecchhHHHHHHHHHHHHHHcC---
Q psy3043 123 YFMRLCVLVSDVLIYIPALLCFFSRTENSSSQRVSQTFVLSVALIYPGLILIDHGHFQFNCISLGLFIWACHHLHLN--- 199 (731)
Q Consensus 123 lFMR~TVIvsDlli~~pAvl~~~~~~~~~~~~~~~~~~~~~liLlnPgLILIDHgHFQYNgvmLGLlLlSI~~L~~~--- 199 (731)
.-+|+...++=+++ +.+.+..+.. .+ ++ ...+++++..++|..+..++. ..-+..+..+.+++++++.+-
T Consensus 71 ~a~RL~~aL~g~~v--~l~~~~~r~~--~~-~~-~al~AAllla~sp~~~~~sr~-~~~D~~l~~f~~lal~~l~r~~~~ 143 (439)
T TIGR03663 71 ATARLLPAVFGVLL--PLTAWLYRKR--LG-DN-EVLWAAVLLAFSPVMVYYSRF-MRNDIFVAFFTLLAVGAAFRYLDT 143 (439)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHH--cC-cH-HHHHHHHHHHHhHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHc
Confidence 35799666544543 2232222211 11 11 123556666789988653332 223466777777777766542
Q ss_pred ----CchhHHHHHHHHhhhhhhHHHHHHHH
Q psy3043 200 ----NPVCTAILFSLSVNYKQMELYHALPF 225 (731)
Q Consensus 200 ----r~llaAv~FslaLnfKqM~LY~APaf 225 (731)
..+++++++++++..|...+.+.+.+
T Consensus 144 ~~~~~~~lag~~~gLa~ltKg~~~l~~~~~ 173 (439)
T TIGR03663 144 GKRRYLFLAASALALAFTSKENAYLIILIF 173 (439)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23788999999999999866655444
No 30
>TIGR03766 conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.
Probab=83.20 E-value=6.2 Score=45.31 Aligned_cols=34 Identities=9% Similarity=0.231 Sum_probs=29.8
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhc
Q psy3043 202 VCTAILFSLSVNYKQMELYHALPFFFYYLGHVYH 235 (731)
Q Consensus 202 llaAv~FslaLnfKqM~LY~APafF~YLL~~c~~ 235 (731)
+.++++.+++-.+|+..+.+.+|++.+++-...+
T Consensus 223 Il~gillal~~~iKp~~iI~liA~~i~~~l~~~~ 256 (483)
T TIGR03766 223 ILLGVLLAIAYFIKPSAIIFVIAIFIVLFLQLLL 256 (483)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999988765443
No 31
>PF14897 EpsG: EpsG family
Probab=76.88 E-value=84 Score=32.81 Aligned_cols=48 Identities=13% Similarity=0.202 Sum_probs=39.8
Q ss_pred chhHHHHHHHHHHHHHHcCCchhHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy3043 181 FNCISLGLFIWACHHLHLNNPVCTAILFSLSVNYKQMELYHALPFFFY 228 (731)
Q Consensus 181 YNgvmLGLlLlSI~~L~~~r~llaAv~FslaLnfKqM~LY~APafF~Y 228 (731)
=+++..++.++|+..+.++|...+.++..+|..+-..++.+.|.++..
T Consensus 114 Rq~~A~~~~~~a~~~~~~~k~~~~~~~~lla~~fH~Saii~l~~~~l~ 161 (330)
T PF14897_consen 114 RQSLAISFFLLALSYLYKKKWIKFILLVLLAILFHYSAIIFLPLYFLS 161 (330)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888889999999999998888888888999988888888885533
No 32
>PF09913 DUF2142: Predicted membrane protein (DUF2142); InterPro: IPR018674 This family of conserved hypothetical proteins has no known function.
Probab=73.18 E-value=1.5e+02 Score=32.58 Aligned_cols=114 Identities=17% Similarity=0.203 Sum_probs=67.3
Q ss_pred CCchHHHHHHHhh-hhhhhhCCCceEeccCCCCCCccceeeehhHHHHHHHHHHHHHHHHHHhhcccCcccchhhHHHHH
Q psy3043 85 YPPLTAYHSLLCG-YVAEYFVPDGVKLFTSHGHESYQHKYFMRLCVLVSDVLIYIPALLCFFSRTENSSSQRVSQTFVLS 163 (731)
Q Consensus 85 YPPLtAY~s~llG-~iA~~~~p~~v~L~~srg~es~~~klFMR~TVIvsDlli~~pAvl~~~~~~~~~~~~~~~~~~~~~ 163 (731)
|||+. |.--..| ++|+.++.+. ......+|+..++.-.++..-|+ +..++ .| ..++
T Consensus 95 y~p~~-Ylp~alGi~ig~ll~l~~-----------~~~~~l~Rl~nll~~~~l~~~Ai----~~~p~---~k----~l~~ 151 (389)
T PF09913_consen 95 YPPLY-YLPQALGIWIGRLLGLSV-----------LVMYYLGRLFNLLLYALLVYLAI----KLAPR---GK----WLLA 151 (389)
T ss_pred CCcHh-hHHHHHHHHHHHHhCCCH-----------HHHHHHHHHHHHHHHHHHHHHHH----HHcch---hH----HHHH
Confidence 88875 4444443 5677776553 12456788887776665433222 22221 11 2455
Q ss_pred HHHhccceEEEeceeecchhHHHHHHHHHHHHHHc-C---C-----chhHHHHHHHHhhhhhhHHHHH
Q psy3043 164 VALIYPGLILIDHGHFQFNCISLGLFIWACHHLHL-N---N-----PVCTAILFSLSVNYKQMELYHA 222 (731)
Q Consensus 164 liLlnPgLILIDHgHFQYNgvmLGLlLlSI~~L~~-~---r-----~llaAv~FslaLnfKqM~LY~A 222 (731)
.+.+.|-.+-. -.-+.|+++..++..+.++.+.+ . + .+..++...++..-|..++-.+
T Consensus 152 ~i~l~Pm~~~~-~aS~s~D~~~~~~~~l~~a~~l~~~~~~~~~~~~~~~l~v~~~ll~~~K~~y~~l~ 218 (389)
T PF09913_consen 152 LIALLPMTLFQ-AASVSYDGLIIALAFLFIALLLRLYRKKKITRRDLILLGVLAVLLALSKPPYIPLL 218 (389)
T ss_pred HHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666754421 33567899999998888887766 1 1 2566777777888993333333
No 33
>KOG3359|consensus
Probab=71.32 E-value=48 Score=40.51 Aligned_cols=163 Identities=18% Similarity=0.143 Sum_probs=92.6
Q ss_pred CCCchHHHHHHHhhhhhhhhCCCceEeccCCCCCC-ccceeeehhHHHHHHHHHHHHHHHHHHhhcccCcccchhhHHHH
Q psy3043 84 DYPPLTAYHSLLCGYVAEYFVPDGVKLFTSHGHES-YQHKYFMRLCVLVSDVLIYIPALLCFFSRTENSSSQRVSQTFVL 162 (731)
Q Consensus 84 DYPPLtAY~s~llG~iA~~~~p~~v~L~~srg~es-~~~klFMR~TVIvsDlli~~pAvl~~~~~~~~~~~~~~~~~~~~ 162 (731)
++|||-.-.--+.|+++.+ |+++--..-+ ++.+ ..--..||.---..--++ .|.+..-.+ ..+.++. .+
T Consensus 82 vHPPlgKmL~al~g~L~Gy-dG~f~f~~~g-~~~~~~~~y~~mR~f~a~lgsl~-vp~~y~t~~---~~~~s~~---aa- 151 (723)
T KOG3359|consen 82 VHPPLGKMLIALVGYLAGY-DGSFDFQSIG-EYYPNGVPYVGMRLFSALLGSLT-VPLAYLTLK---ELGFSRL---AA- 151 (723)
T ss_pred cCchHHHHHHHHHHHHhCC-CCCccccCCC-ccCCCCCchHhHHHHHHHHHhHH-HHHHHHHHH---HhcccHH---HH-
Confidence 5899977766666666655 5554322211 2333 345567887554333332 232222222 2222221 11
Q ss_pred HHHHhccceEEEeceeec------chhHHHHHHHHHHHHHHcCC--------------chhHHHHHHHHhhhhhhHHHHH
Q psy3043 163 SVALIYPGLILIDHGHFQ------FNCISLGLFIWACHHLHLNN--------------PVCTAILFSLSVNYKQMELYHA 222 (731)
Q Consensus 163 ~liLlnPgLILIDHgHFQ------YNgvmLGLlLlSI~~L~~~r--------------~llaAv~FslaLnfKqM~LY~A 222 (731)
++.-.++++||+|=- -+++++.+...+++++.+=. -++.++.-++++..|-+++..-
T Consensus 152 ---~l~allv~~dns~~T~sr~ILLDs~Llff~~~~~y~~~r~~~~~~~pfs~~W~~wL~~tGvsLgcaiSvK~vGlft~ 228 (723)
T KOG3359|consen 152 ---ALAALLVLFDNSLVTLSRFILLDSMLLFFMAAAVYCFVRFYTQRKRPFSLRWWKWLLLTGVSLGCAISVKYVGLFTI 228 (723)
T ss_pred ---HHHHHHHhhcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhhheeehhhhhHHHH
Confidence 112223446777721 27888999999999887522 2578999999999999999887
Q ss_pred HHHHHHHHhh--hhc---chhHHHHHHHHHHHHHHHHHHHHHHh
Q psy3043 223 LPFFFYYLGH--VYH---TTDIRLLLTLGSSVLITFILVWLPFL 261 (731)
Q Consensus 223 PafF~YLL~~--c~~---~~~i~rllkLg~vVl~tfal~flPFl 261 (731)
-....+...+ |+- +..+++.+|-.++= .+.++..||.
T Consensus 229 ~~Vgl~~v~~LW~Ll~D~~~s~~~~~kh~~ar--~~~LI~iP~~ 270 (723)
T KOG3359|consen 229 ALVGLYTVRELWCLLGDLGLSIKQIVKHLLAR--LFFLIGIPFL 270 (723)
T ss_pred HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHH--HHHHHHHHHH
Confidence 7776666554 221 34566666644433 3455566775
No 34
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=64.54 E-value=3.3e+02 Score=33.19 Aligned_cols=189 Identities=13% Similarity=0.160 Sum_probs=93.6
Q ss_pred HHHHHHHHhccceEE-EeceeecchhH-HHHHHHHHHHHHHcCCc---hhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Q psy3043 159 TFVLSVALIYPGLIL-IDHGHFQFNCI-SLGLFIWACHHLHLNNP---VCTAILFSLSVNYKQMELYHALPFFFYYLGHV 233 (731)
Q Consensus 159 ~~~~~liLlnPgLIL-IDHgHFQYNgv-mLGLlLlSI~~L~~~r~---llaAv~FslaLnfKqM~LY~APafF~YLL~~c 233 (731)
.+.++++.++=-++. .=|.+| -|++ ++=++++++--+.++|. +..+++.++..|| -++.+.+...+.|.+-+.
T Consensus 124 ~i~s~~Yafsg~~~~~~~~~~f-ld~~i~lPL~llgie~~~~~~k~~~~~~~~~l~~i~nf-Yf~ym~~if~~iY~~~r~ 201 (843)
T PF09586_consen 124 LIGSLLYAFSGYVIYYSFNIMF-LDAMILLPLLLLGIERLLKEKKWWLFIISLALALISNF-YFAYMICIFLVIYFLIRY 201 (843)
T ss_pred HHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 355555665533332 123344 3443 55677888886666543 2334444444444 233344455555555554
Q ss_pred h-c--c---hhHHHHHHHHHHHHHHHHHHHHHHhhh------------------hhHHHHHHHHcccccccchhh--hhh
Q psy3043 234 Y-H--T---TDIRLLLTLGSSVLITFILVWLPFLSV------------------SQLGHVMYRLFPIYRGLFEDK--VAN 287 (731)
Q Consensus 234 ~-~--~---~~i~rllkLg~vVl~tfal~flPFl~~------------------~ql~Qvi~RLFPf~RGLfedy--vAN 287 (731)
+ + + +.+.+++..++..+...++.++|.+.. ......+.++|+..=.- ..+ ..|
T Consensus 202 ~~~~~k~~~~~~~~~~~~~ilg~~lsa~~llP~~~~~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~ 280 (843)
T PF09586_consen 202 FFKNWKNFFKKILRFIGSSILGVGLSAFLLLPTILSLLQSKRSGGSFSFSLFYPISYYDILSKLFIGSFDF-DEMGSLPN 280 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccccchHHHHHHHhccCcccc-cccccccc
Confidence 2 2 1 234566666677777788899998742 12344555666532111 111 235
Q ss_pred hhhhhhHHHHHH-----hhcch-hh--HHHHHHHHHHHHHhhhhhhhc---ccCc----hhhHHHHHHHHhhhhhhcc
Q psy3043 288 FWCSANVVYKFT-----IYMTN-DQ--MALMCLCTTLLAILPSCVSVF---RKPN----VVKFQQSLIVVSLGFFLFS 350 (731)
Q Consensus 288 fWc~~n~~~K~~-----~~~~~-~~--l~~~slilTLla~lPs~v~L~---~~Ps----~~~Fl~al~~~slsFFLFS 350 (731)
..|..-.+.=+- +.... +. ...+++++.+..++|..-.+| ..|+ +-.|+.+++.+.++...+.
T Consensus 281 ~y~g~l~li~~~~~~~~~~~~~~~k~~~~~i~l~~~l~~~~p~~~~i~~gf~~p~~~~~R~~fi~~f~~~~~~~~~l~ 358 (843)
T PF09586_consen 281 LYCGLLPLILVILYFFFKKIKKKEKLLFLLILLLLLLSFFIPPLNSIWNGFSYPNGFPYRWSFIFIFLISLLAARGLE 358 (843)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 555543221110 00011 11 112233444445567665555 4554 5567777777777666666
No 35
>PF03901 Glyco_transf_22: Alg9-like mannosyltransferase family; InterPro: IPR005599 Members of this family are glycosylphosphatidylinositol mannosyltransferase enzymes 2.4.1.- from EC [, ]. At least some members are localised in endoplasmic reticulum and involved in GPI anchor biosynthesis [, ]. In yeast the SMP3 (YOR149C) has been implemented in plasmid stability [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0006506 GPI anchor biosynthetic process, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=64.17 E-value=84 Score=35.08 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=39.4
Q ss_pred HHHHHHHhccceEEEeceeecchhHHHHHHHHHHHHHHc-----------CCc-hhHHHHHHHHhhhhhhHHHHHHHHHH
Q psy3043 160 FVLSVALIYPGLILIDHGHFQFNCISLGLFIWACHHLHL-----------NNP-VCTAILFSLSVNYKQMELYHALPFFF 227 (731)
Q Consensus 160 ~~~~liLlnPgLILIDHgHFQYNgvmLGLlLlSI~~L~~-----------~r~-llaAv~FslaLnfKqM~LY~APafF~ 227 (731)
...++.++++.... =..+.==|++-..++++|++...+ ++. ...+++-++++.+....+-+.-+...
T Consensus 114 ~~l~l~~~s~~~~~-~~~Rtlsns~e~~l~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Rpt~~~~~~pl~l 192 (418)
T PF03901_consen 114 WALLLSLFSWFMFY-YSSRTLSNSFETILVLLALYLWLRSLSRSNSSSSSKRYLLAIGLLAGLAVFFRPTSALFWLPLGL 192 (418)
T ss_pred hhhhHHHhhhHHHH-hhcccCccHHHHHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554332 112222399999999999999885 233 44455555666666555444444444
Q ss_pred HHH
Q psy3043 228 YYL 230 (731)
Q Consensus 228 YLL 230 (731)
+.+
T Consensus 193 ~~l 195 (418)
T PF03901_consen 193 YLL 195 (418)
T ss_pred HHH
Confidence 444
No 36
>COG1287 Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]
Probab=60.16 E-value=1.8e+02 Score=35.77 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=20.2
Q ss_pred cc--CCCCchHHHHHHHhhhhhhhhCC
Q psy3043 81 WG--LDYPPLTAYHSLLCGYVAEYFVP 105 (731)
Q Consensus 81 Wg--LDYPPLtAY~s~llG~iA~~~~p 105 (731)
|| +||||+.-|..-+.+.+-+.+.|
T Consensus 81 ~G~~i~~~pl~~~l~~~~~~~~~~~~~ 107 (773)
T COG1287 81 PGSPIDFPPLFLYLTAALGLILGSIFP 107 (773)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHccCc
Confidence 78 99999999888887777666665
No 37
>PF14264 Glucos_trans_II: Glucosyl transferase GtrII
Probab=58.69 E-value=2.6e+02 Score=29.93 Aligned_cols=75 Identities=15% Similarity=0.265 Sum_probs=51.1
Q ss_pred HHHHHHHHhccceEEEeceeecchhH--HHHHHH--HHHHHHHcCCc--hhHHHHHHHHhhhhhhHHHHHHHHHHH-HHh
Q psy3043 159 TFVLSVALIYPGLILIDHGHFQFNCI--SLGLFI--WACHHLHLNNP--VCTAILFSLSVNYKQMELYHALPFFFY-YLG 231 (731)
Q Consensus 159 ~~~~~liLlnPgLILIDHgHFQYNgv--mLGLlL--lSI~~L~~~r~--llaAv~FslaLnfKqM~LY~APafF~Y-LL~ 231 (731)
....+.++.||..+ ++.-|+|++. ++|+++ +|++...+++. +.|+++-+++++.=|-..-........ ++.
T Consensus 80 ~l~~~~~~~~P~~~--~~lsy~~~s~~~~ls~~l~~la~~~~~k~~~~~~~~~~ll~~sl~~YQa~~~v~i~l~~~~~l~ 157 (319)
T PF14264_consen 80 VLFSLLFISSPFFL--ENLSYRFDSLPMALSLLLAVLAFYFLKKSKIGFLISILLLVLSLGIYQASINVFISLVLIILLL 157 (319)
T ss_pred HHHHHHHHHhHHHH--HHHHHHHccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778899887 8888888854 455544 44444444432 578899999999999888777666643 344
Q ss_pred hhhc
Q psy3043 232 HVYH 235 (731)
Q Consensus 232 ~c~~ 235 (731)
.+.+
T Consensus 158 ~~~~ 161 (319)
T PF14264_consen 158 DLLK 161 (319)
T ss_pred HHHh
Confidence 4554
No 38
>KOG2647|consensus
Probab=58.25 E-value=1.3e+02 Score=34.79 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=81.8
Q ss_pred HHHHHHHhccceEEEeceeecchhHHHHHHHHHHHHHHcCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhc----
Q psy3043 160 FVLSVALIYPGLILIDHGHFQFNCISLGLFIWACHHLHLNNPVCTAILFSLSVNYKQMELYHALPFFFYYLGHVYH---- 235 (731)
Q Consensus 160 ~~~~liLlnPgLILIDHgHFQYNgvmLGLlLlSI~~L~~~r~llaAv~FslaLnfKqM~LY~APafF~YLL~~c~~---- 235 (731)
.+..++.+||+=|.-.-+== |++..-+.+.+++.+.+|+..-|+.+|+++=+..-+++.-++-+-.-..+.-+.
T Consensus 159 ~a~liFcfnPAsIF~ts~YS--EsLfa~~s~~Gi~~~~~~~~~~~~~~~~l~~~~rSngil~~~~~~~~~~~~~F~~~L~ 236 (444)
T KOG2647|consen 159 YAALLFCFNPASIFLTAGYS--ESLFALFSFLGILFLEKGRQFTGTLLFSLATLVRSNGILSAGFLMHSQNRGFFIFSLT 236 (444)
T ss_pred hhhheeEecchHhhhhHHhh--HHHHHHHHHHHHHHHhcCCccceehHHHHHHHHHhhhhhhHHHHhhhhcceeeeeehH
Confidence 45667788999887444433 778888899999999999999999999999999999988876554332222221
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHccccccc
Q psy3043 236 -TTDIRLLLTLGSSVLITFILVWLPFLSVSQLGHVMYRLFPIYRGL 280 (731)
Q Consensus 236 -~~~i~rllkLg~vVl~tfal~flPFl~~~ql~Qvi~RLFPf~RGL 280 (731)
...-+++++.-+..+++.+...+||.. .+-...++|=-.|+-
T Consensus 237 ~~~r~~~~~~~i~~~~l~~l~~~~p~~~---~qyy~y~~fC~~~~~ 279 (444)
T KOG2647|consen 237 MLNRLRQLFKQIVSLFLSILTFLLPLAA---FQYYGYKLFCPPRTA 279 (444)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHhCCCCCc
Confidence 223455666666666678888899974 344566777555554
No 39
>COG3463 Predicted membrane protein [Function unknown]
Probab=48.24 E-value=3.1e+02 Score=32.17 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=53.1
Q ss_pred HHHHHHHHhccceEEEeceeecchhHHHHHHHHHHHHHHcCCchhHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy3043 159 TFVLSVALIYPGLILIDHGHFQFNCISLGLFIWACHHLHLNNPVCTAILFSLSVNYKQMELYHALPFFFYY 229 (731)
Q Consensus 159 ~~~~~liLlnPgLILIDHgHFQYNgvmLGLlLlSI~~L~~~r~llaAv~FslaLnfKqM~LY~APafF~YL 229 (731)
.....++++||.+.=|----|--..+.--++++|.+++.+|++.+..++-++.+..|-+....+--+-+.+
T Consensus 120 l~isilYll~p~i~gi~~FDFH~m~~avp~~~~a~~f~~r~k~~l~li~lvlIl~tk~~a~liiIsl~i~~ 190 (458)
T COG3463 120 LAISILYLLNPYIEGINLFDFHPMAFAVPLFLLAYYFLKRKKWKLFLIFLVLILLTKEDAFLIIISLLIWL 190 (458)
T ss_pred HHHHHHHHhchhccCchhhhcchHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 46678899999876443333333666666789999999999999999999999999999555554444433
No 40
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=42.63 E-value=1.1e+02 Score=37.42 Aligned_cols=163 Identities=15% Similarity=0.100 Sum_probs=91.5
Q ss_pred CCchHHHHHHHhhhhhhhhCCCceEeccC-CCCCCccceeeehhHHHHHHHHHHHHHHHHHHhhcccCcccchhhHHHHH
Q psy3043 85 YPPLTAYHSLLCGYVAEYFVPDGVKLFTS-HGHESYQHKYFMRLCVLVSDVLIYIPALLCFFSRTENSSSQRVSQTFVLS 163 (731)
Q Consensus 85 YPPLtAY~s~llG~iA~~~~p~~v~L~~s-rg~es~~~klFMR~TVIvsDlli~~pAvl~~~~~~~~~~~~~~~~~~~~~ 163 (731)
+|||-++.--+-|.++.+ ||++-..... ..|-....-..||...-+.-.++ +.++++. .++.+.++. ..
T Consensus 72 HPPL~kml~al~~~L~g~-~g~f~f~~~g~~~~~~~~~y~~mR~f~A~lgsl~--vpl~y~t--~r~~~~s~l---~~-- 141 (699)
T COG1928 72 HPPLGKMLIALVGGLEGY-DPPFDFQLIGLTEYPFGYNYVGMRFFNALLGSLT--VPLVYLI--ARRIGYSRL---VA-- 141 (699)
T ss_pred CCcHHHHHHHhhhhhhcc-CCCcccccCCcccccCCCChHHHHHHHHHHHhHH--HHHHHHH--HHHhcchHH---HH--
Confidence 799999988888888764 5554322111 22333335567998776544442 2232222 222222221 11
Q ss_pred HHHhccceEEEeceeec------chhHHHHHHHHHHHHHHcC---C---------chhHHHHHHHHhhhhhhHHHHHHHH
Q psy3043 164 VALIYPGLILIDHGHFQ------FNCISLGLFIWACHHLHLN---N---------PVCTAILFSLSVNYKQMELYHALPF 225 (731)
Q Consensus 164 liLlnPgLILIDHgHFQ------YNgvmLGLlLlSI~~L~~~---r---------~llaAv~FslaLnfKqM~LY~APaf 225 (731)
++.-.++++||.|.- -|++++.+.+.+++++.+- + -++.++.++++++.|-.++.-.-.+
T Consensus 142 --~l~~llv~~dn~~~t~sR~ILLDs~LlfF~~~~~y~~~r~~~~~p~s~~w~~~Ll~tGisLGcaiS~KwvGlft~~~v 219 (699)
T COG1928 142 --ALAGLLVAFDNSFVTESRFILLDSFLLFFIVAAAYCFLRFHRQQPFSRRWLKWLLLTGISLGCAISVKWVGLFTTGVV 219 (699)
T ss_pred --HHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHhcceeeeEEEeeehhHHHHHHH
Confidence 111122346888753 3778888888888877642 1 2567888999999999987665554
Q ss_pred HHHHHhh--hh---cchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy3043 226 FFYYLGH--VY---HTTDIRLLLTLGSSVLITFILVWLPFL 261 (731)
Q Consensus 226 F~YLL~~--c~---~~~~i~rllkLg~vVl~tfal~flPFl 261 (731)
..+-..+ |+ ++..+++.+|.-++= .|.+++.||.
T Consensus 220 gl~~v~~lW~ll~dk~~s~~~~~kh~~~r--~f~Li~iP~~ 258 (699)
T COG1928 220 GLLAVYELWSLLYDKSVSWKQIIKHWLAR--FFGLIIIPFD 258 (699)
T ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHH--HHHHHHHHHH
Confidence 4333322 21 233556666654433 3556667775
No 41
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=33.63 E-value=2.2e+02 Score=30.54 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhhhhhhhcc---cC----chhhHHHHHHHHhhhhhhcc
Q psy3043 308 ALMCLCTTLLAILPSCVSVFR---KP----NVVKFQQSLIVVSLGFFLFS 350 (731)
Q Consensus 308 ~~~slilTLla~lPs~v~L~~---~P----s~~~Fl~al~~~slsFFLFS 350 (731)
.++|+.+++....|..++... .| +-|++....+..+...|++|
T Consensus 72 lk~sl~~g~~la~P~ilyqiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G 121 (258)
T PRK10921 72 IKLTFMVSLILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIG 121 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999998876431 23 34445555555555455444
No 42
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=33.18 E-value=76 Score=32.37 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=46.4
Q ss_pred Eeceeec--------chhHHHHHHHHHHHHHHcC-------Cc-hhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Q psy3043 174 IDHGHFQ--------FNCISLGLFIWACHHLHLN-------NP-VCTAILFSLSVNYKQMELYHALPFFFYYLGHV 233 (731)
Q Consensus 174 IDHgHFQ--------YNgvmLGLlLlSI~~L~~~-------r~-llaAv~FslaLnfKqM~LY~APafF~YLL~~c 233 (731)
-|..+|| -|.++.++++|.+....++ |+ +++|.+..++++.-++.++..|++...+.-+.
T Consensus 95 S~sfW~~Av~aEVYal~~l~~al~~~l~l~w~~~~~~~~~~r~l~l~afl~GLs~g~H~~~ll~lP~~~~~~~~~~ 170 (178)
T PF11028_consen 95 SDSFWFQAVEAEVYALSSLFTALLLWLLLKWEREADEPRSDRWLLLIAFLCGLSLGVHLLNLLALPAIALLYFFKR 170 (178)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4667776 5777888888887776654 22 68899999999999999999999987665443
No 43
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=32.31 E-value=2.3e+02 Score=30.38 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHcccccccchhhhhhhhhhhhHHHHHHhhcchhhHHHHHHHHHHHHH
Q psy3043 240 RLLLTLGSSVLITFILVWLPFLSVSQLGHVMYRLFPIYRGLFEDKVANFWCSANVVYKFTIYMTNDQMALMCLCTTLLAI 319 (731)
Q Consensus 240 ~rllkLg~vVl~tfal~flPFl~~~ql~Qvi~RLFPf~RGLfedyvANfWc~~n~~~K~~~~~~~~~l~~~slilTLla~ 319 (731)
+|+++..+++++++++++. ..+++.+.+.+-.+ | . |+ -.++...-. .+..++|+.+.+...
T Consensus 33 ~Rli~~li~~~i~~~v~~~---~~~~l~~~l~~p~~---~----~--~l-i~t~~~E~f------~~~ikls~~~g~~~a 93 (249)
T CHL00182 33 QRLFLSLSILLLLTIVCFI---NVKSIVEILQAPAK---G----I--KF-LQLSPGEYF------FSSIKISFYTGLLIS 93 (249)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcc---c----C--ce-EEcCchHHH------HHHHHHHHHHHHHHH
Confidence 5777777777777777654 23555555554321 1 0 10 000000000 123578999999999
Q ss_pred hhhhhhh
Q psy3043 320 LPSCVSV 326 (731)
Q Consensus 320 lPs~v~L 326 (731)
+|..++.
T Consensus 94 ~P~i~yq 100 (249)
T CHL00182 94 SPFIIYQ 100 (249)
T ss_pred HHHHHHH
Confidence 9987764
No 44
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=27.12 E-value=3.6e+02 Score=28.62 Aligned_cols=77 Identities=13% Similarity=0.112 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHc-ccccccchhhhhhhhhhhhHHHHHHhhcchhhHHHHHHHHHHH
Q psy3043 239 IRLLLTLGSSVLITFILVWLPFLSVSQLGHVMYRLF-PIYRGLFEDKVANFWCSANVVYKFTIYMTNDQMALMCLCTTLL 317 (731)
Q Consensus 239 i~rllkLg~vVl~tfal~flPFl~~~ql~Qvi~RLF-Pf~RGLfedyvANfWc~~n~~~K~~~~~~~~~l~~~slilTLl 317 (731)
-+|+++..+++++++.+++.|+.. +++.+.+.+-. |... +..-.++ . ....-+. -.+..++|+.+.+.
T Consensus 10 R~Rli~~~i~~~~~~~~~~~~~~~-~~i~~~l~~p~~~~~~---~~~~~~l----i-~~~~~e~--f~~~lk~s~~~g~~ 78 (237)
T TIGR01912 10 RLILLLVALAIVTGSVLGWLTIFT-PFIIAALRESILPLLA---YHVIATL----I-APSPFAA--LELRIKSAFFIGLL 78 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhcc---cccCcee----E-EcCchHH--HHHHHHHHHHHHHH
Confidence 357888888888888888877754 34444444422 2110 0000000 0 0000000 02335789999999
Q ss_pred HHhhhhhhh
Q psy3043 318 AILPSCVSV 326 (731)
Q Consensus 318 a~lPs~v~L 326 (731)
..+|..++.
T Consensus 79 ~~~P~i~yq 87 (237)
T TIGR01912 79 LASPVLAYE 87 (237)
T ss_pred HHHHHHHHH
Confidence 999987764
No 45
>PF15657 Tox-HNH-EHHH: HNH/Endo VII superfamily nuclease toxins
Probab=24.70 E-value=62 Score=28.73 Aligned_cols=32 Identities=16% Similarity=0.058 Sum_probs=23.2
Q ss_pred cceEEEeCCCCCCCCCCCCCCCceEEEEEECc
Q psy3043 612 VLQDVVDDSDGCGGNDVVDGCGGKFTVLIVSD 643 (731)
Q Consensus 612 ~~leV~DeS~~Hag~~~~~G~gsHF~V~IVS~ 643 (731)
++..|.|.|.||.......+.|.||.+.-..+
T Consensus 23 ~kivIqeHs~gh~~~~~~~~~gPHfn~r~~~~ 54 (72)
T PF15657_consen 23 EKIVIQEHSAGHRYGEGGGNQGPHFNVRPPDN 54 (72)
T ss_pred CEEEEEecCCCCccccCCCCCCCcccccCccc
Confidence 45589999999876544445679999876554
No 46
>PRK10649 hypothetical protein; Provisional
Probab=20.92 E-value=9.4e+02 Score=28.82 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=45.3
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-hhc-chhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHcccccc
Q psy3043 202 VCTAILFSLSVNYKQMELYHALPFFFYYLGH-VYH-TTDIRLLLTLGSSVLITFILVWLPFLSVSQLGHVMYRLFPIYRG 279 (731)
Q Consensus 202 llaAv~FslaLnfKqM~LY~APafF~YLL~~-c~~-~~~i~rllkLg~vVl~tfal~flPFl~~~ql~Qvi~RLFPf~RG 279 (731)
--|.=+++.-+..|...+-.+|.++++++.+ +-. +... + ....++.++.+++++.|+.- +....--||.|.
T Consensus 110 ~Ea~e~ls~~~~~~~~l~~~l~~l~~~~~~~r~~~~~~~~-~-~~~~~~~l~l~~~~~~~~~k-----~~~~~~~~~~r~ 182 (577)
T PRK10649 110 NEASEYLSQYFSLKIVLIALAYTAVAVLLWTRLRPVYIPW-P-WRYVVSFALLYGLILHPIAM-----NTFIKHKPFEKT 182 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccch-h-HHHHHHHHHHHHHHHHHHHH-----HHHhhccchhhH
Confidence 3455566666778888888888887666543 311 1112 2 12222333334445556542 222222344443
Q ss_pred cch--hhh--hhhhhhhhHHHHHHh
Q psy3043 280 LFE--DKV--ANFWCSANVVYKFTI 300 (731)
Q Consensus 280 Lfe--dyv--ANfWc~~n~~~K~~~ 300 (731)
.-+ ..+ ++.|-.+....|.++
T Consensus 183 ~~~~~~~~~p~~~~~~~~~~~~~~~ 207 (577)
T PRK10649 183 LDKLASRMEPAAPWQFLTGYYQYRQ 207 (577)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHH
Confidence 332 222 366766655555544
Done!