RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3043
(731 letters)
>gnl|CDD|217394 pfam03155, Alg6_Alg8, ALG6, ALG8 glycosyltransferase family.
N-linked (asparagine-linked) glycosylation of proteins
is mediated by a highly conserved pathway in eukaryotes,
in which a lipid (dolichol phosphate)-linked
oligosaccharide is assembled at the endoplasmic
reticulum membrane prior to the transfer of the
oligosaccharide moiety to the target asparagine
residues. This oligosaccharide is composed of
Glc(3)Man(9)GlcNAc(2). The addition of the three glucose
residues is the final series of steps in the synthesis
of the oligosaccharide precursor. Alg6 transfers the
first glucose residue, and Alg8 transfers the second
one. In the human alg6 gene, a C->T transition, which
causes Ala333 to be replaced with Val, has been
identified as the cause of a congenital disorder of
glycosylation, designated as type Ic OMIM:603147.
Length = 463
Score = 400 bits (1031), Expect = e-133
Identities = 199/457 (43%), Positives = 272/457 (59%), Gaps = 26/457 (5%)
Query: 25 VSGLLLRWLTSLHPYSGQGKPPMFGDYEAQRHWMEITRHLPVSTWYQNTTDNDLLYWGLD 84
+S L L+ L SL PYSG G PPM+GD+EAQRHW+EIT +LP+S WY N+T N WGLD
Sbjct: 1 ISLLFLKLLISLIPYSGSGSPPMYGDFEAQRHWLEITHNLPISQWYYNSTSN----WGLD 56
Query: 85 YPPLTAYHSLLCGYVAEYFV-PDGVKLFTSHGHESYQHKYFMRLCVLVSDVLIYIPALLC 143
YPPLTAYHS L G +A++F+ P+ + L TS G+ES K FMRL V++SD+L Y+PAL
Sbjct: 57 YPPLTAYHSYLLGQIAKFFIDPEWLALVTSRGYESLATKLFMRLTVIISDLLFYLPALRF 116
Query: 144 FFSRTENSSSQRVSQTFVLSVALIYPGLILIDHGHFQFNCISLGLFIWACHHLHLNNPVC 203
+ + S + + + S+ L+YPGL+LIDHGHFQ+N + LGL +++ L N +
Sbjct: 117 YCKSLKRMSPKD--KFILASLILLYPGLLLIDHGHFQYNGVLLGLLLYSIAALLKNRYLL 174
Query: 204 TAILFSLSVNYKQMELYHALPFFFYYLGHVYHTTDIR----LLLTLGSSVLITFILVWLP 259
A LF L++N+KQMELYHA PFF Y L + + R +L L V+ TF +++LP
Sbjct: 175 AAFLFVLALNFKQMELYHAPPFFVYLLRRCLNKKNFRNSFARILKLALVVVGTFAIIFLP 234
Query: 260 FLSVSQLGHVMYRLFPIYRGLFEDKVANFWCSANVVYKFTIYMTNDQMAL-MCLCTTLLA 318
FL + QL V+ RLFP RGLFEDKVANFWC N V K + Q+ + TL+
Sbjct: 235 FLYLKQLPQVLSRLFPFARGLFEDKVANFWCLYNFVDKIKEVVPLPQIQPYISFILTLIG 294
Query: 319 ILPSCVSVFRKPNVVKFQQSLIVVSLGFFLFSFHVHEKSILLVSTPVILYL---PRDPFP 375
LP+ V +F +P F +L + L FFLFSFHVHEK+ILLV P L L RD
Sbjct: 295 SLPALVKLFLRPTKKGFLLALTLCGLSFFLFSFHVHEKAILLVLLPASLLLSEDRRDLSL 354
Query: 376 CVWFLFISTFSMFDLYIKDNLVLPSLTLMALYYTIIHDFARKS----------RLVYYIF 425
+ FL + FS+F L KDNL+L + L ++ I F S + ++
Sbjct: 355 FILFLNVGYFSLFPLLFKDNLLLIKVVLTLAWFIIYVGFTSISSPYLKRIFLFNISQILY 414
Query: 426 LGSLLGCVLLMC-IALGVAPPPRYQHLFSLFIATYSF 461
+ L+ V+ + + L V PP +Y L+ L + YS
Sbjct: 415 IIGLIPIVIYLHFLDLFVPPPQKYPDLWLLLNSVYSC 451
>gnl|CDD|216662 pfam01722, BolA, BolA-like protein. This family consist of the
morphoprotein BolA from E. coli and its various
homologues. In E. coli over expression of this protein
causes round morphology and may be involved in switching
the cell between elongation and septation systems during
cell division. The expression of BolA is growth rate
regulated and is induced during the transition into the
the stationary phase. BolA is also induced by stress
during early stages of growth and may have a general
role in stress response. It has also been suggested that
BolA can induce the transcription of penicillin binding
proteins 6 and 5.
Length = 72
Score = 45.2 bits (108), Expect = 3e-06
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 615 DVVDDSDGCGGNDVVDGCGGKFTVLIVSDKFEGKGILQRHR 655
+V D+S G G F V++VSD FEGK +++RHR
Sbjct: 13 EVEDESHK--------GDGSHFKVVVVSDAFEGKSLVKRHR 45
>gnl|CDD|223349 COG0271, BolA, Stress-induced morphogen (activity unknown) [Signal
transduction mechanisms].
Length = 90
Score = 42.0 bits (99), Expect = 5e-05
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 603 MPLHIVIYLVLQDVVDDSDGCGGNDVVDGCGGKFTVLIVSDKFEGKGILQRHR 655
P + I D+S G+ G G F V+IVS+ F+GK ++ RHR
Sbjct: 17 PPSFLEII-------DESHRHHGHAG--GGGSHFKVVIVSEAFQGKSLVARHR 60
>gnl|CDD|227937 COG5650, COG5650, Predicted integral membrane protein [Function
unknown].
Length = 536
Score = 37.8 bits (88), Expect = 0.021
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 161 VLSVALIYPGLILIDHGHFQFNCISLGLFIWACHHLHLNNPVCTAILFSLSVNYKQMELY 220
VL VAL+ ++ F+ I A + P +L LS +KQ+ L
Sbjct: 198 VLDVALVAASPLVGFAVFTVFDTIWAFFLAAA--LVCRGRPKLAGVLIGLSSAFKQIPLI 255
Query: 221 HALPFFFYYLGHVYHTTDIRLLLTLGSSVLITFILVWLPFLSVSQLGHVMYRLFPIYRGL 280
LP Y + Y +R + ++ IT++LV LPF+ + V L RGL
Sbjct: 256 -VLPPLLYLI---YKEYGLRPAIKFIATAAITWLLVNLPFIILGPRAWVESILLFARRGL 311
>gnl|CDD|183243 PRK11628, PRK11628, transcriptional regulator BolA; Provisional.
Length = 105
Score = 34.0 bits (78), Expect = 0.045
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 615 DVVDDSDGCGGNDVVDGCGGKFTVLIVSDKFEGKGILQRHR 655
+VVD+S ++V G F V++VSD+F G+ L RHR
Sbjct: 21 EVVDESYR---HNVPAGSESHFKVVLVSDRFTGERFLNRHR 58
>gnl|CDD|227340 COG5007, COG5007, Predicted transcriptional regulator, BolA
superfamily [Transcription].
Length = 80
Score = 32.7 bits (75), Expect = 0.082
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 629 VDGCGGKFTVLIVSDKFEGKGILQRHR 655
V+G G F V+ VS++F GK ++R +
Sbjct: 21 VEGDGSHFQVIAVSEEFAGKSRVKRQQ 47
>gnl|CDD|177990 PLN02361, PLN02361, alpha-amylase.
Length = 401
Score = 31.7 bits (72), Expect = 1.3
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 629 VDGCGGKFTVLIVSDKFEGKGILQRHRKETYKKERRSPGKQEGV-GSNPAKAWNFI 683
+DG GG L + F KGILQ K + + R + GK GV G P++A FI
Sbjct: 233 IDGTGG----LSAAFDFTTKGILQEAVKGQWWRLRDAQGKPPGVMGWWPSRAVTFI 284
>gnl|CDD|185384 PRK15487, PRK15487, O-antigen ligase RfaL; Provisional.
Length = 400
Score = 29.7 bits (67), Expect = 6.8
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 379 FLFISTFSMFDLYIKDNLVLPSLTLMALYYTIIHDFARKSRLVYYIFLGSLLGCVLLMCI 438
FLFI+T+ + + +L++ +T+ A+YY +R + +F SL V ++ +
Sbjct: 19 FLFIATYFLDGITRYKHLIIILMTITAIYY-----LSRDPKHFLSLFKNSLFYSVAVLSL 73
Query: 439 ALGVA 443
AL +
Sbjct: 74 ALLYS 78
>gnl|CDD|217079 pfam02516, STT3, Oligosaccharyl transferase STT3 subunit. This
family consists of the oligosaccharyl transferase STT3
subunit and related proteins. The STT3 subunit is part
of the oligosaccharyl transferase (OTase) complex of
proteins and is required for its activity. In
eukaryotes, OTase transfers a lipid-linked
core-oligosaccharide to selected asparagine residues in
the ER. In the archaea STT3 occurs alone, rather than in
an OTase complex, and is required for N-glycosylation of
asparagines.
Length = 650
Score = 29.7 bits (67), Expect = 6.8
Identities = 23/156 (14%), Positives = 42/156 (26%), Gaps = 14/156 (8%)
Query: 338 SLIVVSLGFFLFSFHVHEKSILLVSTPVILYLPRDPFPCVWFLFISTFSMFDLYIKDNLV 397
+++ +GF + I + V R FL +
Sbjct: 218 PKLLILVGFSYLIATIVGGIIQYL--FVGFAKVRSSEHMGAFLVFGLAQLLAFGSVV--- 272
Query: 398 LPSLTLMALYYTIIHDFARKSRLVYYIFLGSLLGCVLLMCIALGVAPPPRYQHLFSLFIA 457
Y + F + ++ LG L +L + L +SLF
Sbjct: 273 -------KGVYLSFYQFETLTYPGLFLVLG--LIGPVLFLLGLLGFIALWTGRFYSLFDY 323
Query: 458 TYSFEQSLSKLSPHFLISFVILGSGSQPFFARVPLG 493
++ +S L +G + PLG
Sbjct: 324 AKIDIPTIILISEWQPTGLYALLAGLRFLIFTFPLG 359
>gnl|CDD|100071 cd02642, R3H_encore_like, R3H domain of encore-like and DIP1-like
proteins. Drosophila encore is involved in the germline
exit after four mitotic divisions, by facilitating
SCF-ubiquitin-proteasome-dependent proteolysis. Maize
DBF1-interactor protein 1 (DIP1) containing an R3H
domain is a potential regulator of DBF1 activity in
stress responses. The name of the R3H domain comes from
the characteristic spacing of the most conserved
arginine and histidine residues. The function of the
domain is predicted to bind ssDNA or ssRNA in a
sequence-specific manner.
Length = 63
Score = 26.4 bits (59), Expect = 8.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 83 LDYPPLTAYHSLLCGYVAEYF 103
L+ PP+ +Y+ LL VA+Y+
Sbjct: 24 LELPPMNSYYRLLAHRVAQYY 44
>gnl|CDD|222597 pfam14214, Helitron_like_N, Helitron helicase-like domain at
N-terminus. This family is found in Helitrons, recently
recognised eukaryotic transposons that are predicted to
amplify by a rolling-circle mechanism. In many instances
a protein-coding gene is disrupted by their insertion.
Length = 184
Score = 28.7 bits (65), Expect = 8.8
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 43 GKPPMFGDYEAQRHWMEITRHLPVSTWYQNTTDN 76
GKP +F + W EITR L QN D
Sbjct: 103 GKPDLFITFTCNPKWPEITRALLEP--GQNPQDR 134
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.142 0.451
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 37,591,431
Number of extensions: 3760357
Number of successful extensions: 4374
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4352
Number of HSP's successfully gapped: 99
Length of query: 731
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 627
Effective length of database: 6,324,786
Effective search space: 3965640822
Effective search space used: 3965640822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.0 bits)