RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3043
(731 letters)
>2kdn_A Putative uncharacterized protein PFE0790C; solution structure,
ssgcid, seattle structural genomics center for
infectious disease; NMR {Plasmodium falciparum}
Length = 108
Score = 51.7 bits (124), Expect = 2e-08
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 9/41 (21%)
Query: 615 DVVDDSDGCGGNDVVDGCGGKFTVLIVSDKFEGKGILQRHR 655
++VD S GCG F +IVS+ FE K +L RHR
Sbjct: 43 ELVDKSCGCGT---------SFDAVIVSNNFEDKKLLDRHR 74
>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom
center for infectious disease, BOL like protein, unknown
FU; 1.95A {Babesia bovis}
Length = 105
Score = 51.7 bits (124), Expect = 2e-08
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 9/41 (21%)
Query: 615 DVVDDSDGCGGNDVVDGCGGKFTVLIVSDKFEGKGILQRHR 655
V D+S GCG F IVS +FEGKG+L R R
Sbjct: 42 KVTDNSGGCGA---------AFNAYIVSQQFEGKGLLDRQR 73
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 3e-08
Identities = 72/430 (16%), Positives = 134/430 (31%), Gaps = 130/430 (30%)
Query: 97 GYVAEYFVPDGVKLFTSHGHESYQHKYFMRLCVLVSDVLIYIPALLCFFSRTENSS---- 152
G +YF + L+ ++Y LV D++ + L RT +
Sbjct: 164 GNTDDYF-EELRDLY-----QTYHV--------LVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 153 -------------SQRVSQTFVLSVALIYPGLILIDHGHFQFNCISLGLFIWACHHLHLN 199
S + ++LS+ + P + +I H+ LG L
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF-----TPGELR 264
Query: 200 NPVC----------TAILFSLSVNYKQME--LYHALPFFFYYLGHVYHTTDIRLLLTLGS 247
+ + TA+ + + +++ + A+ F ++G + +L
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF-FIG--VRCYEAYPNTSLPP 321
Query: 248 SVLITFILVWL----PFLSVSQLGHVMYRLFPIYRGLFEDKVANFWCSAN-------VVY 296
S+L + P LS+ L +++V ++ N V
Sbjct: 322 SILEDSLENNEGVPSPMLSI--------------SNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 297 KFTIYMTN--DQM-------ALMCLCTTLLAI-LPSCVSVFRKPNVVKFQQSLIVVSLGF 346
I + N + +L L TL PS + R P F + + S
Sbjct: 368 ---ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP----FSERKLKFSNR- 419
Query: 347 FL--FS-FHVHEKSILLVS-TPVIL-YLPRDPFPCVWF---LFI---STFSMFDLYIKDN 395
FL S FH S LLV + +I L ++ + + I TF DL +
Sbjct: 420 FLPVASPFH----SHLLVPASDLINKDLVKNNVS--FNAKDIQIPVYDTFDGSDLRVLSG 473
Query: 396 LVLPSLTLM----------ALYYTIIH--DF-----ARKSRLVYYIFLGSLLGCVLLMCI 438
+ + + H DF + L + G+ G +++
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT--GVRVIVAG 531
Query: 439 ALGVAPPPRY 448
L + P Y
Sbjct: 532 TLDINPDDDY 541
Score = 43.5 bits (102), Expect = 3e-04
Identities = 45/257 (17%), Positives = 76/257 (29%), Gaps = 76/257 (29%)
Query: 424 IFLGSLLGCVLLMCIALGVAPPPRYQHLFSL-----------FIATYSFEQSLSKLSPHF 472
I + L ++ LG P +L IA +S
Sbjct: 241 IGVIQL-AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 473 L-ISFVILGSGSQPFFARVPL-------------GYPG---SISRPPPHHNNEYRQCFIA 515
+ + F I G + L G P SIS Q ++
Sbjct: 300 ITVLFFI-GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ----VQDYV- 353
Query: 516 SHQMGEKRHNTSHLGSGPAQEHQKVSRRNIFNRKTSTNI------LSMVGIEDGTSRMAS 569
+ N+ HL PA + ++S N + N+ S+ G+ +
Sbjct: 354 ------NKTNS-HL---PAGKQVEISLVN-----GAKNLVVSGPPQSLYGLN---LTLRK 395
Query: 570 KRVTTGL--TVPPFFYFKGEEVVSTVFQFLSTVLTMPLH-----IVIYLVLQDVVDDSDG 622
+ +GL + PF E + +FL + P H L+ +D+V ++
Sbjct: 396 AKAPSGLDQSRIPF----SERKLKFSNRFL--PVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 623 CGGND----VVDGCGGK 635
D V D G
Sbjct: 450 FNAKDIQIPVYDTFDGS 466
Score = 28.9 bits (64), Expect = 9.2
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 702 YRTPTALTLPSGCLPLKSLL-LLFTR 726
Y AL + + ++SL+ ++F R
Sbjct: 1767 Y---AALASLADVMSIESLVEVVFYR 1789
>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase
morphogene, stress-induced morphogene, structural
genomics; NMR {Mus musculus} SCOP: d.52.6.1
Length = 113
Score = 50.2 bits (120), Expect = 7e-08
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 615 DVVDDSDGCGGNDVVDGCGGKFTVLIVSDKFEGKGILQRHR 655
+V D + C F VL+VS KFEGK +LQRHR
Sbjct: 49 EVEDTTLN--------RCATSFRVLVVSAKFEGKPLLQRHR 81
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A
{Coxiella burnetii}
Length = 82
Score = 47.7 bits (114), Expect = 3e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 627 DVVDGCGGKFTVLIVSDKFEGKGILQRHR 655
+G G F +++ FEG+ L RHR
Sbjct: 24 ISAEGDGHHFEAVVLCPTFEGQTALTRHR 52
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 123
Score = 49.0 bits (117), Expect = 3e-07
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 615 DVVDDSDGCGGNDVVDGCGGKFTVLIVSDKFEGKGILQRHRK 656
++ ++S G G F V +VS +FEG LQRHR
Sbjct: 45 ELRNESGGHAVPA---GSETHFRVAVVSSRFEGMSPLQRHRL 83
>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene,
structural GEN NPPSFA; NMR {Escherichia coli str}
Length = 107
Score = 46.9 bits (112), Expect = 1e-06
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 615 DVVDDSDGCGGNDVVDGCGGKFTVLIVSDKFEGKGILQRHRK 656
+VVD+S G F V++VSD+F G+ L RHR
Sbjct: 28 EVVDESYRHNVPA---GSESHFKVVLVSDRFTGERFLNRHRM 66
>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN
integrated structural and functional genomic project,
unknown function; NMR {Synthetic}
Length = 80
Score = 43.9 bits (104), Expect = 6e-06
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 627 DVVDGCGGKFTVLIVSDKFEGKGILQRHR 655
DV G F +VS F GK L RHR
Sbjct: 25 DVQGEDGVHFEATVVSPAFVGKAPLARHR 53
>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG,
structural genomics, PSI, protein structure initiative;
NMR {Escherichia coli} SCOP: d.52.6.1
Length = 97
Score = 43.9 bits (104), Expect = 7e-06
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 629 VDGCGGKFTVLIVSDKFEGKGILQRHRK 656
V G G F V+ V + F+G +++ +
Sbjct: 26 VSGDGSHFQVIAVGELFDGMSRVKKQQT 53
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 5e-05
Identities = 57/416 (13%), Positives = 114/416 (27%), Gaps = 119/416 (28%)
Query: 352 HVHEKSILLVSTPVILYLPRDPFPC--VWFLFISTFSMFDLYIKDNLVLPSLTLMALYYT 409
K IL V + + F C V + S S ++ D++++ +
Sbjct: 15 QYQYKDILSVFEDAFV---DN-FDCKDVQDMPKSILSKEEI---DHIIMSKDAVSGTLR- 66
Query: 410 IIHDFARKSRLVYYIFLGSLLGCVLLMCIALGVAPPPRYQHLFSLF--------IATYSF 461
+ K + F+ +L Y+ L S + T +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLR--------------INYKFLMSPIKTEQRQPSMMTRMY 112
Query: 462 EQSLSKLSPHFLISFVILGSGSQPFFARVPLGYPGSISRPPPHHNNEYRQC--------F 513
+ +L + +Q F ++SR P+ + RQ
Sbjct: 113 IEQRDRLY-----------NDNQVF-------AKYNVSRLQPYL--KLRQALLELRPAKN 152
Query: 514 IASHQMGEKRHNTSHLGSG-------PAQEHQKVSRR--NIF-----NRKTSTNILSMVG 559
+ + GSG ++ + IF N + +L M+
Sbjct: 153 VLIDGVL---------GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML- 202
Query: 560 IEDGTSRMASKRVTTGLTVPPFFYFKGEEVVSTVFQFLSTVLTMPLHIVIYLVLQDV--- 616
++ ++ T + + ++ L +L + LVL +V
Sbjct: 203 -----QKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 617 --VDDSD-GC------GGNDVVDGCGGKFTVLIVSDKF-------EGKGILQRHRKETYK 660
+ + C V D T I D E K +L ++ +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 661 KERRSPGKQEGVGSNP-AKAWNFILIYLRIQPHNNRASRVRWYRTPTALTLPSGCL 715
R E + +NP + +I I+ + T+ L
Sbjct: 317 DLPR-----EVLTTNPRRLS----IIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Score = 41.4 bits (96), Expect = 0.001
Identities = 38/217 (17%), Positives = 68/217 (31%), Gaps = 44/217 (20%)
Query: 122 KYFMRLCVLVSDVLIYIPALLCFFSRTENSSSQRVSQTFVLSVALI----YPGLILIDHG 177
K F RL V I L + S V +L+ I I
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH-KYSLVEKQPKESTISIPSI 431
Query: 178 HFQFNCISLGLFIWACHHLHLN--NPVCTAILFSLSVNYKQMELYHALPFFFYYLGHVYH 235
+ + + A H ++ N T L Y Y F+ ++G +H
Sbjct: 432 YLELKVKLENEY--ALHRSIVDHYNIPKTFDSDDLIPPYLDQ--Y-----FYSHIG--HH 480
Query: 236 TTDIRL--LLTLGSSVLITF-------ILVWLPFLSVSQLGHVM-----YRLF-----PI 276
+I +TL V + F + + + + + Y+ + P
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 277 YRGLFEDKVANFW--CSANVV-YKFTIYMTNDQMALM 310
Y L + +F N++ K+T + ++ALM
Sbjct: 541 YERLVNA-ILDFLPKIEENLICSKYTDLL---RIALM 573
Score = 30.6 bits (68), Expect = 2.2
Identities = 34/236 (14%), Positives = 63/236 (26%), Gaps = 77/236 (32%)
Query: 8 QLLPLDQSQQYISFLL------IVSGLLLR-W-----------LTSLHPYS---GQGKPP 46
L P + + + + I + LL W + LH YS Q K
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 47 MFGDY------------EAQRHWMEITRHLPVSTWYQNTT-----DNDLLYWGLDYPPLT 89
E H + + T+ + D Y+ Y +
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ---YF---YSHI- 477
Query: 90 AYHSLLCGYVAEY-----------FVPDGVKLFTSHGHESYQHKYFMRLCVLVSDVLIY- 137
+H + F+ K+ H+S + + + Y
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFL--EQKIR----HDSTAWNASGSILNTLQQLKFYK 531
Query: 138 -------------IPALLCFFSRTENSSSQRVSQTFVLSVALIYPGLILIDHGHFQ 180
+ A+L F + E + T +L +AL+ + + H Q
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIE-ENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic
ehrlichiosis, STRE response, structural genomics; NMR
{Ehrlichia chaffeensis}
Length = 76
Score = 39.7 bits (93), Expect = 2e-04
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 631 GCGGKFTVLIVSDKFEGKGILQRHR 655
G +++ ++S +F+GK L++HR
Sbjct: 31 GDNNHYSIKVISSQFQGKSKLEQHR 55
>3rce_A Oligosaccharide transferase to N-glycosylate PROT;
oligosaccharyltransferase, membrane protein, helical
bundle, glycosylation, acceptor peptide, plasma
membrane; HET: PPN; 3.40A {Campylobacter lari}
Length = 724
Score = 28.5 bits (62), Expect = 9.3
Identities = 42/305 (13%), Positives = 82/305 (26%), Gaps = 17/305 (5%)
Query: 205 AILFSLSVNYKQMELYHALPFFFYYLGHVYHTTDIRLLLTLGSSVLITFILVWLPFLSVS 264
A FS+ + FF+ + T D ++ F S
Sbjct: 23 AFAFSVLCRLYWVAWASEFYEFFFNDQLMITTNDGYAFAEGARDMIAGFHQPNDLSYFGS 82
Query: 265 QLGHVMYRLFPIYRGLFEDKVANFWC------SANVVYKFTIYMTNDQMALMCLCTTLLA 318
L + Y L+ I + + + + + L +
Sbjct: 83 SLSTLTYWLYSIL-PFSFESIILYMSTFFASLIVVPIILIAREYKLTTYGF--IAALLGS 139
Query: 319 ILPSCVSVFRKPNVVKFQQSLIVVSLGFFLFSFHVHEKSIL-LVSTPVILYLPRDPFPCV 377
I S + L++ L F K I L+ +P+ + + +P
Sbjct: 140 IANSYYNRTMSGYYDTDMLVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWYPSS 199
Query: 378 WFLFISTFSMFDLYIKDNLVLPSLTLMALYYTIIHDFARKSRLVYYIFLGSLLGCVLLMC 437
+ L + +F LY + +A+ II L + L VLL
Sbjct: 200 YSLNFAMIGLFGLYTLVFHRKEKIFYLAIALMIIA-------LSMLAWQYKLALIVLLFA 252
Query: 438 IALGVAPPPRYQHLFSLFIATYSFEQSLSKLSPHFLISFVILGSGSQPFFARVPLGYPGS 497
I + +++L + S L P + S + +
Sbjct: 253 IFAFKEEKINFYMIWALIFISISILHLSGGLDPVLYQLKFYVFKASDVQNLKDAAFMYFN 312
Query: 498 ISRPP 502
++
Sbjct: 313 VNETI 317
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.142 0.451
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,146,264
Number of extensions: 663036
Number of successful extensions: 1425
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1416
Number of HSP's successfully gapped: 19
Length of query: 731
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 630
Effective length of database: 3,881,772
Effective search space: 2445516360
Effective search space used: 2445516360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.3 bits)