RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3043
         (731 letters)



>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli
           [TaxId: 562]}
          Length = 97

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 629 VDGCGGKFTVLIVSDKFEGKGILQRHR 655
           V G G  F V+ V + F+G   +++ +
Sbjct: 26  VSGDGSHFQVIAVGELFDGMSRVKKQQ 52


>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 113

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 8/41 (19%)

Query: 615 DVVDDSDGCGGNDVVDGCGGKFTVLIVSDKFEGKGILQRHR 655
           +V D +           C   F VL+VS KFEGK +LQRHR
Sbjct: 49  EVEDTTLN--------RCATSFRVLVVSAKFEGKPLLQRHR 81


>d2aiba1 a.134.1.1 (A:1-98) beta-cinnamomin {Fungus (Phytophthora
           cinnamomi) [TaxId: 4785]}
          Length = 98

 Score = 26.8 bits (59), Expect = 3.6
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 11/45 (24%)

Query: 290 CSANVVYKF---TIYMTNDQMALMCL---CTTLLAI-----LPSC 323
           CS +  Y     T   TN Q  LMC    C T++        P C
Sbjct: 27  CSKDSGYSMLTATALPTNAQYKLMCASTACNTMIKKIVALNPPDC 71


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 27.8 bits (61), Expect = 5.0
 Identities = 26/230 (11%), Positives = 53/230 (23%), Gaps = 15/230 (6%)

Query: 190 IWACHHLHLNNPVC------TAILFSLSVNYKQMELYHALPFFFYYLG------HVYHTT 237
                 L+  +P        T+ +  L  +     +  A                   + 
Sbjct: 161 ALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSL 220

Query: 238 DIRLLLTLGSSVLITFILVWLPFLSVSQLGHVMYRLFPIYRGLFEDKVANFWCSANVVYK 297
            +  L  + +S           F+    L   + RL   Y    ED       +  +   
Sbjct: 221 AVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCY-PPPEDPAVRGRLTECLETI 279

Query: 298 FTIYMTNDQMALMCLCTTLLAILPSCVSVFRKPNVVKFQQSLIVVSLGFFLFSFHVHEKS 357
                   +   +       A+L   +S+    +            LG FL     + + 
Sbjct: 280 LNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRY 339

Query: 358 ILLVSTPVILYLPRDPFPCVWFL--FISTFSMFDLYIKDNLVLPSLTLMA 405
           + L S   +             +   I+              +  L  M 
Sbjct: 340 LALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC 389


>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide
           transhydrogenase dI component {Rhodospirillum rubrum
           [TaxId: 1085]}
          Length = 194

 Score = 27.0 bits (59), Expect = 5.7
 Identities = 16/119 (13%), Positives = 27/119 (22%), Gaps = 12/119 (10%)

Query: 104 VPDGVKLFTSHGHE-SYQHKYFMRLCVLVSDVLIYIPALLCFFSRTENSSSQRVSQTFVL 162
            P+ VK     G E   +    +   +    +      +    ++  +          V 
Sbjct: 19  SPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALS------QADVVW 72

Query: 163 SVALIYPGLILIDHGHFQFNCISLGLFIWACHHLHLNNPVCTAILFSLSVNYKQMELYH 221
            V          D              +  CH   L N      L    +    MEL  
Sbjct: 73  KVQRPMTAEEGTDEVALIKEG-----AVLMCHLGALTNRPVVEALTKRKITAYAMELMP 126


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.142    0.451 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,746,349
Number of extensions: 129758
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 10
Length of query: 731
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 639
Effective length of database: 1,144,436
Effective search space: 731294604
Effective search space used: 731294604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.9 bits)