BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3045
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 304 bits (778), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 153/266 (57%), Positives = 187/266 (70%), Gaps = 35/266 (13%)
Query: 7 KPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLND 61
+P+ P S++ G + ALLC AQ W+KFIEG++RK AV LND
Sbjct: 240 EPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLND 299
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
RVKQVSGTLIIK+A VEDSGKYLCVVNNSVGGESVETVLTVTAPL+A ++P QT+DFGR
Sbjct: 300 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGR 359
Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP 181
PA FT C+Y GNP+KT+SWMKDGK + H+E
Sbjct: 360 PAVFT-----------------------------CQYTGNPIKTVSWMKDGKAI-GHSES 389
Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
V RI+SV+KEDKGMYQC +RN++ESA+AS ELKLGGRFDPPVI+++F +ET+ PGP+ +
Sbjct: 390 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFL 449
Query: 242 KCIASGNPTPEISWYLDGKKLVNAER 267
KC+A GNPTPEISW LDGKK+ N +R
Sbjct: 450 KCVAGGNPTPEISWELDGKKIANNDR 475
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 9/127 (7%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVF-----RIDSV-RKEDKGMY 196
+ I G TC G P+ +I W +D + +P + + VF I++V R D+ Y
Sbjct: 536 KAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATY 595
Query: 197 QCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISW 255
CV +N QE A G L++ P +I +F + G C G P I W
Sbjct: 596 TCVAKN-QEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDW 654
Query: 256 YLDGKKL 262
LDG+ +
Sbjct: 655 TLDGQAI 661
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 75/213 (35%), Gaps = 43/213 (20%)
Query: 56 AVPLNDRVKQV-SGTLIIKEA-KVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPT 113
A+P+N + K +GTLII+ + D Y CV N G +A
Sbjct: 566 ALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEG-------------YSARGSLE 612
Query: 114 VQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPV-KTISWMKDG 172
VQ + R F +E P G+ C G + I W DG
Sbjct: 613 VQVMVLPRIIPFA--FEEGPA------------QVGQYLTLHCSVPGGDLPLNIDWTLDG 658
Query: 173 KPVPD----------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP 222
+ + + V I++V G + C RN Q + L + + PP
Sbjct: 659 QAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNV---YVPP 715
Query: 223 VIKESFSDETLNPGPNYYFKCIASGNPTPEISW 255
+D+ G + +C A G P P+++W
Sbjct: 716 RWILEPTDKAFAQGSDAKVECKADGFPKPQVTW 748
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 14/116 (12%)
Query: 95 SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQF 154
SV T+ V A A T + QFT + P +EPT + G A+
Sbjct: 677 SVLTIEAVEASHAGNF--TCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKV 734
Query: 155 TCKYEGNPVKTISWMKDGKPVPDH------------NEPVFRIDSVRKEDKGMYQC 198
CK +G P ++W K P E +D+++K ++G Y C
Sbjct: 735 ECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLC 790
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 17/80 (21%)
Query: 140 EPTVQTIDFGRP--AQFTCKYEGNPVKTISWMK-DGKPVPDHNE------------PVFR 184
EPT IDF A+ CK GNP+ I W++ DG V D P FR
Sbjct: 44 EPT-NRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFR 102
Query: 185 IDSVRKEDKG-MYQCVIRNE 203
+ R+E +Y C+ RN+
Sbjct: 103 AEDYRQEVHAQVYACLARNQ 122
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 241 FKCIASGNPTPEISW 255
+C ASGNP PEI W
Sbjct: 59 IECKASGNPMPEIIW 73
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 224 bits (570), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 116/190 (61%), Positives = 137/190 (72%), Gaps = 35/190 (18%)
Query: 32 SFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV 86
S++LLC AQ W+KFIEG++RK AV LNDRVKQVSGTLIIK+A VEDSGKYLCV
Sbjct: 232 SYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCV 291
Query: 87 VNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTI 146
VNNSVGGESVETVLTVTAPL+A ++P QT+DFGRPA F
Sbjct: 292 VNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVF--------------------- 330
Query: 147 DFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQES 206
TC+Y GNP+KT+SWMKDGK + H+E V RI+SV+KEDKGMYQC +RN++ES
Sbjct: 331 --------TCQYTGNPIKTVSWMKDGKAI-GHSESVLRIESVKKEDKGMYQCFVRNDRES 381
Query: 207 AQASGELKLG 216
A+AS ELKLG
Sbjct: 382 AEASAELKLG 391
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 80/223 (35%), Gaps = 55/223 (24%)
Query: 67 SGTLIIKEAKVEDSGK-YLCVVNNSVGGES----VETVLTVTAPLAAGVEPTVQTIDFGR 121
SG L I+E ED K Y C + + GE+ + L +T P+ + V P V D
Sbjct: 165 SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGS-VRPKVNPQD--- 220
Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK--DGKPVPDHN 179
QF ++ C + P + W K +G
Sbjct: 221 KHQFI------------------DVELASSYSLLCMAQSYPTPSFRWYKFIEGTT---RK 259
Query: 180 EPVFRIDSVRK------------EDKGMYQCVIRNEQESAQASGELK----LGGRFDPPV 223
+ V D V++ ED G Y CV+ N L L + DPP
Sbjct: 260 QAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT 319
Query: 224 IKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 266
+T++ G F C +GNP +SW DGK + ++E
Sbjct: 320 -------QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 355
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 17/80 (21%)
Query: 140 EPTVQTIDFGRP--AQFTCKYEGNPVKTISWMK-DGKPVPD------------HNEPVFR 184
EPT IDF A+ CK GNP+ I W++ DG V D P FR
Sbjct: 9 EPT-NRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFR 67
Query: 185 IDSVRKE-DKGMYQCVIRNE 203
+ R+E +Y C+ RN+
Sbjct: 68 AEDYRQEVHAQVYACLARNQ 87
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 241 FKCIASGNPTPEISW 255
+C ASGNP PEI W
Sbjct: 24 IECKASGNPMPEIIW 38
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 115/192 (59%), Positives = 136/192 (70%), Gaps = 35/192 (18%)
Query: 30 GESFALLCEAQ-----ENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
+ +LLC AQ W+KFIEG++RK AV LNDRVKQVSGTLIIK+A VEDSGKYL
Sbjct: 233 AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL 292
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
CVVNNSVGGESVETVLTVTAPL+A ++P QT+DFGRPA F
Sbjct: 293 CVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVF------------------- 333
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 204
TC+Y GNP+KT+SWMKDGK + H+E V RI+SV+KEDKGMYQC +RN++
Sbjct: 334 ----------TCQYTGNPIKTVSWMKDGKAI-GHSESVLRIESVKKEDKGMYQCFVRNDR 382
Query: 205 ESAQASGELKLG 216
ESA+AS ELKLG
Sbjct: 383 ESAEASAELKLG 394
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 84/223 (37%), Gaps = 56/223 (25%)
Query: 67 SGTLIIKEAKVEDSGK-YLCVVNNSVGGES----VETVLTVTAPLAAGVEPTVQTIDFGR 121
SG L I+E ED K Y C + + GE+ + L +T P+++ T
Sbjct: 169 SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRT-------- 220
Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK--DGKPVPDHN 179
PA + PL V T+ + C +G P + W K +G
Sbjct: 221 PAL------VQKPLELMVAHTISLL---------CPAQGFPAPSFRWYKFIEGT---TRK 262
Query: 180 EPVFRIDSVRK------------EDKGMYQCVIRNEQESAQASGELK----LGGRFDPPV 223
+ V D V++ ED G Y CV+ N L L + DPP
Sbjct: 263 QAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT 322
Query: 224 IKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 266
+T++ G F C +GNP +SW DGK + ++E
Sbjct: 323 -------QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 358
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 17/80 (21%)
Query: 140 EPTVQTIDFGRP--AQFTCKYEGNPVKTISWMK-DGKPVPD------------HNEPVFR 184
EPT IDF A+ CK GNP+ I W++ DG V D P FR
Sbjct: 15 EPT-NRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFR 73
Query: 185 IDSVRKEDKG-MYQCVIRNE 203
+ R+E +Y C+ RN+
Sbjct: 74 AEDYRQEVHAQVYACLARNQ 93
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 241 FKCIASGNPTPEISW 255
+C ASGNP PEI W
Sbjct: 30 IECKASGNPMPEIIW 44
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 221 bits (562), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 115/192 (59%), Positives = 136/192 (70%), Gaps = 35/192 (18%)
Query: 30 GESFALLCEAQ-----ENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
+ +LLC AQ W+KFIEG++RK AV LNDRVKQVSGTLIIK+A VEDSGKYL
Sbjct: 227 AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL 286
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
CVVNNSVGGESVETVLTVTAPL+A ++P QT+DFGRPA F
Sbjct: 287 CVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVF------------------- 327
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 204
TC+Y GNP+KT+SWMKDGK + H+E V RI+SV+KEDKGMYQC +RN++
Sbjct: 328 ----------TCQYTGNPIKTVSWMKDGKAI-GHSESVLRIESVKKEDKGMYQCFVRNDR 376
Query: 205 ESAQASGELKLG 216
ESA+AS ELKLG
Sbjct: 377 ESAEASAELKLG 388
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 82/223 (36%), Gaps = 56/223 (25%)
Query: 67 SGTLIIKEAKVEDSGK-YLCVVNNSVGGESVETV----LTVTAPLAAGVEPTVQTIDFGR 121
SG L I+E ED K Y C + + GE+ + L +T P+++ T + +
Sbjct: 163 SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQ--K 220
Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK--DGKPVPDHN 179
P + + IS C +G P + W K +G
Sbjct: 221 PLELMVAHTIS---------------------LLCPAQGFPAPSFRWYKFIEGT---TRK 256
Query: 180 EPVFRIDSVRK------------EDKGMYQCVIRNEQESAQASGELK----LGGRFDPPV 223
+ V D V++ ED G Y CV+ N L L + DPP
Sbjct: 257 QAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT 316
Query: 224 IKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 266
+T++ G F C +GNP +SW DGK + ++E
Sbjct: 317 -------QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 352
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 17/80 (21%)
Query: 140 EPTVQTIDFGRP--AQFTCKYEGNPVKTISWMK-DGKPVPDHNE------------PVFR 184
EPT IDF A+ CK GNP+ I W++ DG V D P FR
Sbjct: 9 EPT-NRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFR 67
Query: 185 IDSVRKEDKG-MYQCVIRNE 203
+ R+E +Y C+ RN+
Sbjct: 68 AEDYRQEVHAQVYACLARNQ 87
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 241 FKCIASGNPTPEISW 255
+C ASGNP PEI W
Sbjct: 24 IECKASGNPMPEIIW 38
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 88/211 (41%), Gaps = 27/211 (12%)
Query: 63 VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRP 122
V Q +G L I + + D G Y CVV N+V VL PL + G
Sbjct: 151 VSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHK---VLGPPTPLILRND--------GVM 199
Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKPVP----- 176
++ K E+ P E G + C GNPV TI W + DGKP+
Sbjct: 200 GEYEPKIEVQFPETVPAEK-------GTTVKLECFALGNPVPTILWRRADGKPIARKARR 252
Query: 177 DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPG 236
+ + I + ++ED G Y+CV N + A G+L + P + +D +
Sbjct: 253 HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTF---YAQPNWVQIINDIHVAME 309
Query: 237 PNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ +++C A+G P P W +G L+ +R
Sbjct: 310 ESVFWECKANGRPKPTYRWLKNGDPLLTRDR 340
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 63/160 (39%), Gaps = 36/160 (22%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPT-VQTIDFG 120
R + +G L I + ED+G Y CV NS G + LT A +P VQ I+
Sbjct: 251 RRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA------QPNWVQIIN-- 302
Query: 121 RPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN- 179
+ +E +V + CK G P T W+K+G P+ +
Sbjct: 303 -------------DIHVAMEESVF---------WECKANGRPKPTYRWLKNGDPLLTRDR 340
Query: 180 ----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
+ I V D GMYQCV N+ +S EL +
Sbjct: 341 IQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 380
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 81/230 (35%), Gaps = 43/230 (18%)
Query: 55 VAVPLNDRVKQVSGTLIIKE-AKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPT 113
V + ++ R V G+L+I K +D+G Y C+ NS G T+++ A L
Sbjct: 48 VDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFG-----TIVSREAKLQFAYLEN 102
Query: 114 VQT-------IDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTI 166
+T + G+ C PP +G E + I P+
Sbjct: 103 FKTRTRSTVSVRRGQGMVLLC----GPPPHSG-ELSYAWIFNEYPS-------------- 143
Query: 167 SWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG--------ELKLGGR 218
+D + I V K D G Y CV+ N + + G + G
Sbjct: 144 --YQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGE 201
Query: 219 FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW-YLDGKKLVNAER 267
++P + + G +C A GNP P I W DGK + R
Sbjct: 202 YEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR 251
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 61 DRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVG 92
DR++ GTL I + D+G Y CV N G
Sbjct: 339 DRIQIEQGTLNITIVNLSDAGMYQCVAENKHG 370
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 150 RPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSV----------RKEDKGMYQCV 199
+ + +C+ +GNP I W +G V + FR V + +D G YQC+
Sbjct: 23 KKVKLSCEVKGNPKPHIRWKLNGTDVDIGMD--FRYSVVDGSLLINNPNKTQDAGTYQCI 80
Query: 200 IRN 202
N
Sbjct: 81 ATN 83
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 88/211 (41%), Gaps = 27/211 (12%)
Query: 63 VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRP 122
V Q +G L I + + D G Y CVV N+V VL PL + G
Sbjct: 152 VSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHK---VLGPPTPLILRND--------GVM 200
Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKPVP----- 176
++ K E+ P E G + C GNPV TI W + DGKP+
Sbjct: 201 GEYEPKIEVQFPETVPAEK-------GTTVKLECFALGNPVPTILWRRADGKPIARKARR 253
Query: 177 DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPG 236
+ + I + ++ED G Y+CV N + A G+L + P + +D +
Sbjct: 254 HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTF---YAQPNWVQIINDIHVAME 310
Query: 237 PNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ +++C A+G P P W +G L+ +R
Sbjct: 311 ESVFWECKANGRPKPTYRWLKNGDPLLTRDR 341
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 63/160 (39%), Gaps = 36/160 (22%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPT-VQTIDFG 120
R + +G L I + ED+G Y CV NS G + LT A +P VQ I+
Sbjct: 252 RRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA------QPNWVQIIN-- 303
Query: 121 RPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN- 179
+ +E +V + CK G P T W+K+G P+ +
Sbjct: 304 -------------DIHVAMEESVF---------WECKANGRPKPTYRWLKNGDPLLTRDR 341
Query: 180 ----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
+ I V D GMYQCV N+ +S EL +
Sbjct: 342 IQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 81/230 (35%), Gaps = 43/230 (18%)
Query: 55 VAVPLNDRVKQVSGTLIIKE-AKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPT 113
V + ++ R V G+L+I K +D+G Y C+ NS G T+++ A L
Sbjct: 49 VDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFG-----TIVSREAKLQFAYLEN 103
Query: 114 VQT-------IDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTI 166
+T + G+ C PP +G E + I P+
Sbjct: 104 FKTRTRSTVSVRRGQGMVLLC----GPPPHSG-ELSYAWIFNEYPS-------------- 144
Query: 167 SWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG--------ELKLGGR 218
+D + I V K D G Y CV+ N + + G + G
Sbjct: 145 --YQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGE 202
Query: 219 FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW-YLDGKKLVNAER 267
++P + + G +C A GNP P I W DGK + R
Sbjct: 203 YEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR 252
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 61 DRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVG 92
DR++ GTL I + D+G Y CV N G
Sbjct: 340 DRIQIEQGTLNITIVNLSDAGMYQCVAENKHG 371
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 150 RPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSV----------RKEDKGMYQCV 199
+ + +C+ +GNP I W +G V + FR V + +D G YQC+
Sbjct: 24 KKVKLSCEVKGNPKPHIRWKLNGTDVDIGMD--FRYSVVDGSLLINNPNKTQDAGTYQCI 81
Query: 200 IRN 202
N
Sbjct: 82 ATN 84
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 83/216 (38%), Gaps = 25/216 (11%)
Query: 57 VPLNDR--VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTV 114
+P + R V Q +G L I D G Y C+ + + S ++V + A L E T
Sbjct: 144 IPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDF-STKSVFSKFAQLNLAAEDT- 201
Query: 115 QTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGK 173
+ P P G+ C GNPV I W K DG
Sbjct: 202 ---------------RLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKVDGS 246
Query: 174 PVPDHN--EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDE 231
P EP +I SV ED+G Y+C N + G + + + P + SD
Sbjct: 247 LSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQ---PEWLKVISDT 303
Query: 232 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ G N + C A+G P P + W +G+ L + R
Sbjct: 304 EADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNR 339
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 63/168 (37%), Gaps = 34/168 (20%)
Query: 53 RKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEP 112
RKV L+ + TL I ED G Y C NS G ++V+ + V A
Sbjct: 241 RKVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQA-------- 292
Query: 113 TVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG 172
P + T D G ++ C G P T+ W+++G
Sbjct: 293 -------------------QPEWLKVISDT--EADIGSNLRWGCAAAGKPRPTVRWLRNG 331
Query: 173 KPVPDHNEPV-----FRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
+P+ N R + ED GMYQCV N+ + AS EL +
Sbjct: 332 EPLASQNRVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAV 379
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 61 DRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104
+RV+ ++G L + +EDSG Y CV N G L V A
Sbjct: 338 NRVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAVQA 381
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 25/216 (11%)
Query: 57 VPLNDR--VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTV 114
+P + R V Q +G L I + + D G Y C + + + ++V + + L+ E
Sbjct: 145 IPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFIT-KSVFSKFSQLSLAAEDAR 203
Query: 115 QTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGK 173
Q +P + A + G+ C GNPV I W K DG
Sbjct: 204 Q---------------YAPSIKAKFPADTYALT-GQMVTLECFAFGNPVPQIKWRKLDGS 247
Query: 174 PVPD--HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDE 231
+EP+ I +V ED+G Y+C N + G + + + P + +D
Sbjct: 248 QTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQ---PDWLDVITDT 304
Query: 232 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ G + + C+ASG P P + W DG+ L + R
Sbjct: 305 EADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNR 340
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 147 DFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE-----PVFRIDSVRKEDKGMYQCVIR 201
D G +++C G P + W++DG+P+ N R + ED GMYQCV
Sbjct: 307 DIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAE 366
Query: 202 NEQESAQASGELKL 215
N+ + AS EL +
Sbjct: 367 NKHGTVYASAELTV 380
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 93/255 (36%), Gaps = 53/255 (20%)
Query: 31 ESFALLCEAQEN---MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKE-AKVEDSGKYLCV 86
E L C A+ N + + G+ K+ + R + V+G L+I K +D+G Y CV
Sbjct: 23 EKVTLTCRARANPPATYRWKMNGTELKMGP--DSRYRLVAGDLVISNPVKAKDAGSYQCV 80
Query: 87 VNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTI 146
N+ G TV++ A L FG +F+ A +P T
Sbjct: 81 ATNARG-----TVVSREASL-----------RFGFLQEFS---------AEERDPVKITE 115
Query: 147 DFGRPAQFTCKYEGN-PVKTISWM---------KDGKPVPDHNEPVFRIDSVRKEDKGMY 196
+G FTC + P + W+ DG+ I D G Y
Sbjct: 116 GWG--VMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNY 173
Query: 197 QCVIRNEQESAQAS-----GELKLG---GRFDPPVIKESF-SDETLNPGPNYYFKCIASG 247
C + + S +L L R P IK F +D G +C A G
Sbjct: 174 SCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFG 233
Query: 248 NPTPEISWY-LDGKK 261
NP P+I W LDG +
Sbjct: 234 NPVPQIKWRKLDGSQ 248
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 60 NDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104
+R++ G L + +EDSG Y CV N G LTV A
Sbjct: 338 QNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 92/247 (37%), Gaps = 42/247 (17%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
GE L C+ W+K E + + A + K +L+I + D G+Y
Sbjct: 20 GEPITLQCKVDGTPEIRIAWYK--EHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYT 77
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
C NSVG + VL + + ++ P A ++ +
Sbjct: 78 CKAENSVGAVASSAVLVIK------------------------ERKLPPSFARKLKDVHE 113
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGM 195
T+ F P F C+ G+ +SW KDG+ + D HN +I + G
Sbjct: 114 TLGF--PVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQ 171
Query: 196 YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 255
Y C N +A +S +L L PP L G + FKC +G +I+W
Sbjct: 172 YNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITW 231
Query: 256 YLDGKKL 262
D +++
Sbjct: 232 AKDNREI 238
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 42/211 (19%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFT 126
+ TL + + D+G+Y C +N G +S L V P
Sbjct: 252 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP--------------------- 290
Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE------ 180
P +EP+ + + ++ CK G+P + W KD + + ++
Sbjct: 291 ------PRFIKKLEPS-RIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV 343
Query: 181 ---PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI-KESFSDETLNPG 236
V + ++ ED G Y C N SA +S LK+ +PPV K+ ETL G
Sbjct: 344 ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK---EPPVFRKKPHPVETLK-G 399
Query: 237 PNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ + +C G P ++SW+ D ++L + ++
Sbjct: 400 ADVHLECELQGTPPFQVSWHKDKRELRSGKK 430
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 68/196 (34%), Gaps = 41/196 (20%)
Query: 77 VEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLA 136
VEDSG Y C +N+ G S T L V PP+
Sbjct: 356 VEDSGDYTCEAHNAAGSASSSTSLKVK----------------------------EPPVF 387
Query: 137 AGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKD------GKPVPDHNEPVF---RIDS 187
V+T+ G C+ +G P +SW KD GK +E I +
Sbjct: 388 RKKPHPVETLK-GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILN 446
Query: 188 VRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG 247
V D G YQC N+ S G + L PP + SD + G + G
Sbjct: 447 VDSADIGEYQCKASNDVGSDTCVGSITLKA---PPRFVKKLSDISTVVGEEVQLQATIEG 503
Query: 248 NPTPEISWYLDGKKLV 263
++W+ D ++V
Sbjct: 504 AEPISVAWFKDKGEIV 519
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSV 188
+E + + + +F C G P T+ W+K+GK PDH +++ DSV
Sbjct: 22 MEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV 81
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIAS 246
DKG Y C++ NE S + +L + R P+++ +++T+ G N F C
Sbjct: 82 VPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVY 141
Query: 247 GNPTPEISW 255
+P P I W
Sbjct: 142 SDPQPHIQW 150
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 60/176 (34%), Gaps = 46/176 (26%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
+V+ + ++I+ D G Y C+V N G + T Q R
Sbjct: 68 KVRYATWSIIMDSVVPSDKGNYTCIVENEYG----------------SINHTYQLDVVER 111
Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK----DGKPVPD 177
P L AG+ P +T+ G +F CK +P I W+K +G +
Sbjct: 112 SPH-------RPILQAGL-PANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGP 163
Query: 178 HNEP------------------VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
N P V + +V ED G Y C+ N + S L +
Sbjct: 164 DNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 219
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 18/94 (19%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGT------------LII 72
G + +C+ + W K IE + K+ P N Q+ T L +
Sbjct: 131 GSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIG-PDNLPYVQILKTAGVNTTDKEMEVLHL 189
Query: 73 KEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPL 106
+ ED+G+Y C+ NS+G LTV L
Sbjct: 190 RNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLEAL 223
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 241 FKCIASGNPTPEISWYLDGKKL 262
FKC +SG P P + W +GK+
Sbjct: 37 FKCPSSGTPQPTLRWLKNGKEF 58
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSV 188
+E + + + +F C G P T+ W+K+GK PDH +++ DSV
Sbjct: 21 MEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV 80
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIAS 246
DKG Y C++ NE S + +L + R P+++ +++T+ G N F C
Sbjct: 81 VPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVY 140
Query: 247 GNPTPEISW 255
+P P I W
Sbjct: 141 SDPQPHIQW 149
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 60/176 (34%), Gaps = 46/176 (26%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
+V+ + ++I+ D G Y C+V N G + T Q R
Sbjct: 67 KVRYATWSIIMDSVVPSDKGNYTCIVENEYG----------------SINHTYQLDVVER 110
Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK----DGKPVPD 177
P L AG+ P +T+ G +F CK +P I W+K +G +
Sbjct: 111 SPH-------RPILQAGL-PANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGP 162
Query: 178 HNEP------------------VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
N P V + +V ED G Y C+ N + S L +
Sbjct: 163 DNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 18/94 (19%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGT------------LII 72
G + +C+ + W K IE + K+ P N Q+ T L +
Sbjct: 130 GSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIG-PDNLPYVQILKTAGVNTTDKEMEVLHL 188
Query: 73 KEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPL 106
+ ED+G+Y C+ NS+G LTV L
Sbjct: 189 RNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLEAL 222
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 241 FKCIASGNPTPEISWYLDGKKL 262
FKC +SG P P + W +GK+
Sbjct: 36 FKCPSSGTPQPTLRWLKNGKEF 57
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSV 188
+E + + + +F C G P T+ W+K+GK PDH +++ DSV
Sbjct: 21 MEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV 80
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIAS 246
DKG Y C++ NE S + +L + R P+++ +++T+ G N F C
Sbjct: 81 VPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVY 140
Query: 247 GNPTPEISW 255
+P P I W
Sbjct: 141 SDPQPHIQW 149
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 60/176 (34%), Gaps = 46/176 (26%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
+V+ + ++I+ D G Y C+V N G + T Q R
Sbjct: 67 KVRYATWSIIMDSVVPSDKGNYTCIVENEYG----------------SINHTYQLDVVER 110
Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK----DGKPVPD 177
P L AG+ P +T+ G +F CK +P I W+K +G +
Sbjct: 111 SPH-------RPILQAGL-PANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGP 162
Query: 178 HNEP------------------VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
N P V + +V ED G Y C+ N + S L +
Sbjct: 163 DNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 18/94 (19%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGT------------LII 72
G + +C+ + W K IE + K+ P N Q+ T L +
Sbjct: 130 GSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIG-PDNLPYVQILKTAGVNTTDKEMEVLHL 188
Query: 73 KEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPL 106
+ ED+G+Y C+ NS+G LTV L
Sbjct: 189 RNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLEAL 222
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 241 FKCIASGNPTPEISWYLDGKKL 262
FKC +SG P P + W +GK+
Sbjct: 36 FKCPSSGTPNPTLRWLKNGKEF 57
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 100/265 (37%), Gaps = 60/265 (22%)
Query: 10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVK 64
G APT S ++ R GE+ L C A N WF +N +
Sbjct: 202 GPDAPTISPLNTSYR----SGENLNLSCHAASNPPAQYSWF-------------VNGTFQ 244
Query: 65 QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQ 124
Q + L I V +SG Y C +NS G + TV T+T A +P + T + P
Sbjct: 245 QSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITV-YAEPPKPFI-TSNNSNPV- 301
Query: 125 FTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-------D 177
E +A EP +Q T W + + +P
Sbjct: 302 -----EDEDAVALTCEPEIQN------------------TTYLWWVNNQSLPVSPRLQLS 338
Query: 178 HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDP--PVIKESFSDETLNP 235
++ + SV + D G Y+C I+NE S S + L + P P I S++ P
Sbjct: 339 NDNRTLTLLSVTRNDVGPYECGIQNEL-SVDHSDPVILNVLYGPDDPTISPSYT--YYRP 395
Query: 236 GPNYYFKCIASGNPTPEISWYLDGK 260
G N C A+ NP + SW +DG
Sbjct: 396 GVNLSLSCHAASNPPAQYSWLIDGN 420
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 100/252 (39%), Gaps = 49/252 (19%)
Query: 18 SVSDIIRFKKPGGESFALLCEAQEN---MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKE 74
++S + +PG + +L C A N + I+G+ ++Q + L I
Sbjct: 385 TISPSYTYYRPG-VNLSLSCHAASNPPAQYSWLIDGN-----------IQQHTQELFISN 432
Query: 75 AKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPP 134
++SG Y C NNS G S TV T+T + + +P+
Sbjct: 433 ITEKNSGLYTCQANNSASGHSRTTVKTITV-----------SAELPKPS----------- 470
Query: 135 LAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-------DHNEPVFRIDS 187
+++ V+ D FTC+ E + W+ +G+ +P + + +
Sbjct: 471 ISSNNSKPVEDKD---AVAFTCEPEAQNTTYLWWV-NGQSLPVSPRLQLSNGNRTLTLFN 526
Query: 188 VRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG 247
V + D Y C I+N SA S + L + P S D + G N C ++
Sbjct: 527 VTRNDARAYVCGIQNS-VSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSAS 585
Query: 248 NPTPEISWYLDG 259
NP+P+ SW ++G
Sbjct: 586 NPSPQYSWRING 597
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 154 FTCKYEGNPVKTISWMKDGK-PVP-----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESA 207
FTC+ E + W+ + PV + + +V + D Y+C +N SA
Sbjct: 131 FTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNP-VSA 189
Query: 208 QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 259
+ S + L + P S + + G N C A+ NP + SW+++G
Sbjct: 190 RRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNG 241
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 105/254 (41%), Gaps = 46/254 (18%)
Query: 30 GESFALLCEA------QENMWF----KFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
GES LC+ ++ WF + + + ++++V ND S TL I A ++D
Sbjct: 17 GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND---DDSSTLTIYNANIDD 73
Query: 80 SGKYLCVVNNSVGGESVETV-LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
+G Y CVV G +S TV + + L PT Q G A C S P
Sbjct: 74 AGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLP---- 129
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
PT+ K++G + + KD + + N +I ++K D+G Y+C
Sbjct: 130 --PTI-----------IWKHKG---RDVILKKDVRFIVLSNN-YLQIRGIKKTDEGTYRC 172
Query: 199 VIRNEQESAQASGELKLGG----RFDPPVI--KESFSDETLNPGPNYYFKCIASGNPTPE 252
R A GE+ PP + ++S + T N G + C A G P P
Sbjct: 173 EGR-----ILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPT 227
Query: 253 ISWYLDGKKLVNAE 266
+SW DG+ + N E
Sbjct: 228 MSWTKDGEPIENEE 241
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 19/100 (19%)
Query: 135 LAAGVEPTVQ--------TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP----V 182
+ V PTVQ T + G+ C +G P T+SW KDG+P+ + E +
Sbjct: 189 VIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHI 248
Query: 183 FRIDS-------VRKEDKGMYQCVIRNEQESAQASGELKL 215
F DS V K D+ Y C+ N+ AS LK+
Sbjct: 249 FSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 55/135 (40%), Gaps = 19/135 (14%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVR- 189
P QT G A F C+ G P I+WMK GK V D V RI +R
Sbjct: 14 PEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRV 73
Query: 190 KEDKGMYQCVIRNEQESAQASGEL------KLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
+ D+ +Y+C N S +L +L F P I + + G C
Sbjct: 74 QRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGF--PTIDMGPQLKVVEKGRTATMLC 131
Query: 244 IASGNPTPEISWYLD 258
A GNP PEISW+ D
Sbjct: 132 AAGGNPDPEISWFKD 146
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 56/145 (38%), Gaps = 36/145 (24%)
Query: 70 LIIKEAKVE-DSGKYLCVVNNSVGGESVETVLTVTA--PLAAGVEPTVQTIDFGRPAQFT 126
L I+ +V+ D Y C NS+G + L+V L +G TID G
Sbjct: 66 LRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFP----TIDMG------ 115
Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------PD 177
P ++ ++ GR A C GNP ISW KD PV
Sbjct: 116 --------------PQLKVVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQ 161
Query: 178 HNEPVFRIDSVRKEDKGMYQCVIRN 202
+I+S + D+G Y+CV N
Sbjct: 162 LRSGALQIESSEESDQGKYECVATN 186
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKY 83
G + +LC A N WFK + N R+KQ+ SG L I+ ++ D GKY
Sbjct: 124 GRTATMLCAAGGNPDPEISWFKDFLPVDPAAS---NGRIKQLRSGALQIESSEESDQGKY 180
Query: 84 LCVVNNSVG 92
CV NS G
Sbjct: 181 ECVATNSAG 189
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
PV + D+T G F C A+G P P I+W GKK V+++R
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKK-VSSQR 52
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 63/151 (41%), Gaps = 35/151 (23%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCK 128
L+I +DSG Y CVV S LTV P P P+
Sbjct: 276 NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVP------PWF----LNHPSNLYA- 324
Query: 129 YEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV--PDHNEPV---- 182
YE ++D +F C G PV T++WMK+G V D+ + V
Sbjct: 325 YE--------------SMDI----EFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSN 366
Query: 183 FRIDSVRKEDKGMYQCVIRNEQESAQASGEL 213
RI V K D+G YQCV NE +AQ+S +L
Sbjct: 367 LRILGVVKSDEGFYQCVAENEAGNAQSSAQL 397
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 83/223 (37%), Gaps = 40/223 (17%)
Query: 48 IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLA 107
I G SR V +P SG L I + DSG Y C N A
Sbjct: 165 IPGDSRVVVLP--------SGALQISRLQPGDSGVYRCSARN-------------PASTR 203
Query: 108 AGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTIS 167
G E V+ + P Y + P V I+ G+ A C G P + +
Sbjct: 204 TGNEAEVRILS--DPGLHRQLYFLQRP------SNVIAIE-GKDAVLECCVSGYPPPSFT 254
Query: 168 WMKDGKPVPDHNEPV-------FRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFD 220
W++ + + ++ I +V +D G Y CV+ + E+ AS EL +
Sbjct: 255 WLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTV---LV 311
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 263
PP S+ + F+C SG P P ++W +G ++
Sbjct: 312 PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVI 354
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 16/160 (10%)
Query: 118 DFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK---DGKP 174
D G T K ++ PL + T G C+ G+P+ TI W K D P
Sbjct: 105 DSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNP 164
Query: 175 VPDHNEPV------FRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF 228
+P + V +I ++ D G+Y+C RN S + E ++ DP + ++ +
Sbjct: 165 IPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNP-ASTRTGNEAEVRILSDPGLHRQLY 223
Query: 229 -----SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 263
S+ G + +C SG P P +W L G++++
Sbjct: 224 FLQRPSNVIAIEGKDAVLECCVSGYPPPSFTW-LRGEEVI 262
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 84/224 (37%), Gaps = 63/224 (28%)
Query: 66 VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQF 125
V L I A +ED+G Y C ++ G TV V Q + F
Sbjct: 58 VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV----------VLEIYQKLTF------ 101
Query: 126 TCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI 185
+ +SP Q G A+ C+ +P +SW+ HNE V I
Sbjct: 102 --REVVSP----------QEFKQGEDAEVVCRVSSSPAPAVSWLY-------HNEEVTTI 142
Query: 186 DSVR---------------KEDKGMYQCVIRNEQESAQASGELKLGGRFD----PPVI-- 224
R K D+G+Y+C R E A GE+ PP I
Sbjct: 143 SDNRFAMLANNNLQILNINKSDEGIYRCEGRVE-----ARGEIDFRDIIVIVNVPPAISM 197
Query: 225 -KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
++SF + T G F C ASG+P P ISW+ +GK + E+
Sbjct: 198 PQKSF-NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK 240
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------IDSVRKEDKGMYQ 197
T + G F+C+ G+P ISW ++GK + ++ + + + + ++ D G Y
Sbjct: 205 TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYV 264
Query: 198 CVIRNE 203
C N+
Sbjct: 265 CRATNK 270
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 227 SFSDETLNPGPNYYFKCIASGNPTPEISWYL-DGKKLVNAER 267
S S L+ G + +F C A G P I WY G+K+++ +R
Sbjct: 10 SLSKVELSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQR 50
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 72/205 (35%), Gaps = 54/205 (26%)
Query: 79 DSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
D Y CV NSVG +V LTV R Q + P + G
Sbjct: 75 DENVYECVAQNSVGEITVHAKLTVL-----------------REDQLPSGF---PNIDMG 114
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVR 189
P ++ ++ R A C GNP I+W KD PV +I+S
Sbjct: 115 --PQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSE 172
Query: 190 KEDKGMYQCVIRNEQESAQASGELKLGGRFDPPV--------IKESFS----DETLNPGP 237
+ D+G Y+CV N G R+ P + FS + PG
Sbjct: 173 ETDQGKYECVATN-----------SAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGG 221
Query: 238 NYYFKCIASGNPTPEISWYLDGKKL 262
N C+A G+P P + W + L
Sbjct: 222 NVNITCVAVGSPMPYVKWMQGAEDL 246
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 31/142 (21%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVR 189
EP Q G A F C+ G+P ++W K GK V V RI +R
Sbjct: 12 EPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLR 71
Query: 190 K-EDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKES-----FSDETLNPGPNYYFK- 242
D+ +Y+CV +N + GE+ + + V++E F + + P +
Sbjct: 72 TPRDENVYECVAQN------SVGEITVHAKLT--VLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 243 ------CIASGNPTPEISWYLD 258
C ASGNP PEI+W+ D
Sbjct: 124 RTATMLCAASGNPDPEITWFKD 145
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 68/174 (39%), Gaps = 37/174 (21%)
Query: 35 LLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKYLCVVN 88
+LC A N WFK + N R+KQ+ SG L I+ ++ D GKY CV
Sbjct: 128 MLCAASGNPDPEITWFKDFLPVDPSAS---NGRIKQLRSGALQIESSEETDQGKYECVAT 184
Query: 89 NSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF 148
NS G + + PA + + P + + P I
Sbjct: 185 NSAG------------------------VRYSSPANLYVRVQNVAPRFS-ILPMSHEIMP 219
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNEPVFR--IDSVRKEDKGMYQCV 199
G TC G+P+ + WM+ + + P+ + PV R ++ +D Y CV
Sbjct: 220 GGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSANYTCV 273
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 220 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+PP + D+ G F C A+G+P P ++W GKK VN++R
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKK-VNSQR 51
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 54/133 (40%), Gaps = 15/133 (11%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVR- 189
P QT G A F C+ G P I+WMK GK V D V RI +R
Sbjct: 13 PEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRV 72
Query: 190 KEDKGMYQCVIRNEQESAQASGELKL--GGRFDP--PVIKESFSDETLNPGPNYYFKCIA 245
+ D+ +Y+C N S +L + + P P I + + C A
Sbjct: 73 QRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAA 132
Query: 246 SGNPTPEISWYLD 258
GNP PEISW+ D
Sbjct: 133 GGNPDPEISWFKD 145
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 32/143 (22%)
Query: 70 LIIKEAKVE-DSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCK 128
L I+ +V+ D Y C NS+G + T ++ + P +ID G
Sbjct: 65 LRIQPLRVQRDEAIYECTATNSLG--EINTSAKLSVLEEEQLPPGFPSIDMG-------- 114
Query: 129 YEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------PDHN 179
P ++ ++ R A C GNP ISW KD PV
Sbjct: 115 ------------PQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLR 162
Query: 180 EPVFRIDSVRKEDKGMYQCVIRN 202
+I+S + D+G Y+CV N
Sbjct: 163 SGALQIESSEESDQGKYECVATN 185
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 60 NDRVKQV-SGTLIIKEAKVEDSGKYLCVVNNSVG 92
N R+KQ+ SG L I+ ++ D GKY CV NS G
Sbjct: 155 NGRIKQLRSGALQIESSEESDQGKYECVATNSAG 188
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
PV + D+T G F C A+G P P I+W GKK V+++R
Sbjct: 7 PVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKK-VSSQR 51
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 15/134 (11%)
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGM 195
T G AQ +C+ G P+ I W + GK + D + + +ED+G+
Sbjct: 18 TTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGV 77
Query: 196 YQCVIRNEQESAQASGELKLGG--RFDPPV-IKESFSDETLNPGPNYYFKCIASGNPTPE 252
Y C+ NE + S +L L +F P +KE + G + G P P
Sbjct: 78 YTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAV---GSTLRLHVMYIGRPVPA 134
Query: 253 ISWYLDGKKLVNAE 266
++W+ K L N+E
Sbjct: 135 MTWFHGQKLLQNSE 148
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 220 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ P I++ D T G C G P P+I WY GK+L+ + +
Sbjct: 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRK 53
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 59/171 (34%), Gaps = 42/171 (24%)
Query: 44 WFKFIEG--SSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLT 101
W++F + SRK + + R + TL + + ED G Y C+ N VG VET
Sbjct: 41 WYRFGKELIQSRKYKMSSDGR----THTLTVMTEEQEDEGVYTCIATNEVG--EVET--- 91
Query: 102 VTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN 161
++ L P QF Y + V G + Y G
Sbjct: 92 -SSKLLLQATP-----------QFHPGYPLKEKYYGAV---------GSTLRLHVMYIGR 130
Query: 162 PVKTISWMKDGKPV----------PDHNEPVFRIDSVRKEDKGMYQCVIRN 202
PV ++W K + +H + + RK G Y+ + N
Sbjct: 131 PVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSN 181
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 42/211 (19%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFT 126
+ TL + + D+G+Y C +N G +S L V AP
Sbjct: 60 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAP--------------------- 98
Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE------ 180
P +EP+ + + ++ CK G+P + W KD + + ++
Sbjct: 99 ------PRFIKKLEPS-RIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV 151
Query: 181 ---PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI-KESFSDETLNPG 236
V + ++ ED G Y C N SA +S LK+ +PPV K+ ETL G
Sbjct: 152 ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK---EPPVFRKKPHPVETLK-G 207
Query: 237 PNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ + +C G P ++SW+ D ++L + ++
Sbjct: 208 ADVHLECELQGTPPFQVSWHKDKRELRSGKK 238
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 12/137 (8%)
Query: 131 ISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD---------HNEP 181
++PP ++P + G F C G I+W KD + + N
Sbjct: 3 MAPPFF-DLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
+ V K D G Y C N + + S +LG + P IK+ + + +
Sbjct: 62 TLTVLKVTKGDAGQYTCYASN--VAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRY 119
Query: 242 KCIASGNPTPEISWYLD 258
+C G+P ++ WY D
Sbjct: 120 ECKIGGSPEIKVLWYKD 136
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 51/148 (34%), Gaps = 38/148 (25%)
Query: 77 VEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLA 136
VEDSG Y C +N+ G S T L V PP+
Sbjct: 164 VEDSGDYTCEAHNAAGSASSSTSLKVK----------------------------EPPVF 195
Query: 137 AGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKD------GKPVPDHNEPVF---RIDS 187
V+T+ G C+ +G P +SW KD GK +E I +
Sbjct: 196 RKKPHPVETLK-GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILN 254
Query: 188 VRKEDKGMYQCVIRNEQESAQASGELKL 215
V D G YQC N+ S G + L
Sbjct: 255 VDSADIGEYQCKASNDVGSYTCVGSITL 282
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 11/125 (8%)
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRID-----------SVRKEDKGMYQ 197
G A F G PV +SW +DG+ + P +I +V K + G Y
Sbjct: 20 GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYS 79
Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL 257
N A ++ EL + PP + T+ G + +G PTP + +Y
Sbjct: 80 LKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYR 139
Query: 258 DGKKL 262
DG ++
Sbjct: 140 DGAEI 144
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNEP-------------VFRI 185
P+ + G PA CK EG P TI W K G+ V D ++P RI
Sbjct: 15 HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRI 74
Query: 186 DSVRKE--DKGMYQCVIRN---EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYY 240
RK D+G+Y CV RN E S AS E+ + R D +++ SD + G
Sbjct: 75 VHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAI-LRDD---FRQNPSDVMVAVGEPAV 130
Query: 241 FKCI-ASGNPTPEISWYLDGKKL 262
+C G+P P ISW DG L
Sbjct: 131 MECQPPRGHPEPTISWKKDGSPL 153
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 84/210 (40%), Gaps = 50/210 (23%)
Query: 20 SDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTL---- 70
SD+I K GE L C+A+ W+K E P + R+ SG+L
Sbjct: 17 SDLIVSK---GEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLR 73
Query: 71 IIKEAKVE-DSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKY 129
I+ K D G Y+CV N +G E+V A +E + DF +
Sbjct: 74 IVHGRKSRPDEGVYVCVARNYLG-EAVSH--------DASLEVAILRDDFRQ-------- 116
Query: 130 EISPPLAAGVEPTVQTIDFGRPAQFTCKY-EGNPVKTISWMKDGKPVPDHNEPV------ 182
P+ + G PA C+ G+P TISW KDG P+ D +E +
Sbjct: 117 ----------NPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK 166
Query: 183 FRIDSVRKEDKGMYQCVIRN---EQESAQA 209
I RK D G Y CV N E+ES A
Sbjct: 167 LMITYTRKSDAGKYVCVGTNMVGERESEVA 196
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
PP I E SD ++ G C A G PTP I WY G+++
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERV 50
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 11/125 (8%)
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRID-----------SVRKEDKGMYQ 197
G A F G PV +SW +DG+ + P +I +V K + G Y
Sbjct: 20 GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYS 79
Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL 257
N A ++ EL + PP + T+ G + +G PTP + +Y
Sbjct: 80 LKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYR 139
Query: 258 DGKKL 262
DG ++
Sbjct: 140 DGAEI 144
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 23/136 (16%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
V P + + G+ + C+ G+P W K K +P+ N ++V +D G Y C
Sbjct: 23 VNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVC 82
Query: 199 VIRNEQESAQASGELKLGGRFDPPVIKESF------------------SDETLNPGPNYY 240
+ N + E + D I ESF + + L PG
Sbjct: 83 RVNNN-----FTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLV 137
Query: 241 FKCIASGNPTPEISWY 256
+C+A G+P P W+
Sbjct: 138 LQCVAVGSPIPHYQWF 153
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 13/143 (9%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFT 126
+ LI V+D+G Y+C VNN+ E + + + +V + +
Sbjct: 64 TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESK----- 118
Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRID 186
L VEPT Q + G C G+P+ W K+ P+ + ++ +
Sbjct: 119 --------LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVP 170
Query: 187 SVRKEDKGMYQCVIRNEQESAQA 209
V E +G Y C + N+++S +
Sbjct: 171 YVDLEHQGTYWCHVYNDRDSQDS 193
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP------DHNEPVFRIDSVRKEDKGMYQ 197
Q + G C G P I+W K G +P ++ RI +V +ED G Y
Sbjct: 232 QMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYF 291
Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL 257
C+ N+ S + + +++ P + + L PG + C A+GNP P + W +
Sbjct: 292 CLASNKMGSIRHTISVRVKAA---PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMV 348
Query: 258 DGKKLVNA 265
+G+ L +A
Sbjct: 349 NGEPLQSA 356
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 41/153 (26%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
+ + + L I EDSG+Y C+ +N +G S+ ++V A
Sbjct: 269 KFENFNKALRITNVSEEDSGEYFCLASNKMG--SIRHTISVRVKAAP------------- 313
Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV----PD 177
Y + P + P G + C+ GNP T+ WM +G+P+ P+
Sbjct: 314 -------YWLDEPKNLILAP-------GEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPN 359
Query: 178 HNEPV------FRIDSVRKEDKGMYQCVIRNEQ 204
N V FR + + +YQC NE
Sbjct: 360 PNREVAGDTIIFRDTQI--SSRAVYQCNTSNEH 390
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 260
P + K+S D ++P N +C A GNP P W + +
Sbjct: 17 PTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSR 56
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 15/114 (13%)
Query: 156 CKYEGNPVKTISWMKDGKPVPDHNEPV-------------FRIDSVRKEDKGMYQCVIRN 202
C+ +GNP + W ++ + +P FR +E +G YQC RN
Sbjct: 39 CEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARN 98
Query: 203 EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI-ASGNPTPEISW 255
+ +A S ++L P KE+ + G +C G P+P I W
Sbjct: 99 KFGTA-LSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFW 151
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 59/141 (41%), Gaps = 31/141 (21%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRK 190
P QT G A F C+ G+P I W K GK V D + V RI +R
Sbjct: 13 PVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRT 72
Query: 191 -EDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDE---TLNPGPNY------- 239
D+ +Y+CV N GE+ + R V++E T++ GP
Sbjct: 73 PRDEAIYECVASNN------VGEISVSTRLT--VLREDQIPRGFPTIDMGPQLKVVERTR 124
Query: 240 --YFKCIASGNPTPEISWYLD 258
C ASGNP PEI+W+ D
Sbjct: 125 TATMLCAASGNPDPEITWFKD 145
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 51/136 (37%), Gaps = 34/136 (25%)
Query: 79 DSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
D Y CV +N+VG SV T LTV + TID G
Sbjct: 75 DEAIYECVASNNVGEISVSTRLTVLR--EDQIPRGFPTIDMG------------------ 114
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP------------VFRID 186
P ++ ++ R A C GNP I+W KD PV N +I+
Sbjct: 115 --PQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIE 172
Query: 187 SVRKEDKGMYQCVIRN 202
+ D+G Y+CV N
Sbjct: 173 QSEESDQGKYECVATN 188
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 34 ALLCEAQEN-----MWFK-FIEGSSRKVAVPLNDRVKQVS----GTLIIKEAKVEDSGKY 83
+LC A N WFK F+ + N R+KQ+ G L I++++ D GKY
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDTSNN----NGRIKQLRSESIGALQIEQSEESDQGKY 182
Query: 84 LCVVNNSVG 92
CV NS G
Sbjct: 183 ECVATNSAG 191
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 264
PP + D+T G F C A+G+P P+I W GKK+ N
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN 49
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 57/140 (40%), Gaps = 17/140 (12%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE-----------PVFRIDSV 188
+P Q + G A F C G+P +I W K+GK V + RI+ V
Sbjct: 12 KPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPV 71
Query: 189 RK-EDKGMYQCVIRN---EQESAQASGELKLGGRFDP--PVIKESFSDETLNPGPNYYFK 242
R D Y+CV N + SA A+ + G + PVI + + G
Sbjct: 72 RAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMT 131
Query: 243 CIASGNPTPEISWYLDGKKL 262
C A GNPTP I W + K+
Sbjct: 132 CKAIGNPTPNIYWIKNQTKV 151
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 54/133 (40%), Gaps = 31/133 (23%)
Query: 78 EDSGKYLCVVNNSVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLA 136
D Y CV N VG S + LT+ PA F P +
Sbjct: 75 RDDAPYECVAENGVGDAVSADATLTIYEGDKT-------------PAGF-------PVIT 114
Query: 137 AGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVR 189
G P + I+ G TCK GNP I W+K+ V D + P + +I++ R
Sbjct: 115 QG--PGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKV-DMSNPRYSLKDGFLQIENSR 171
Query: 190 KEDKGMYQCVIRN 202
+ED+G Y+CV N
Sbjct: 172 EEDQGKYECVAEN 184
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
Query: 5 DLKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPL 59
D P GF T + +I G + + C+A N W K + KV +
Sbjct: 104 DKTPAGFPVITQGPGTRVIEV----GHTVLMTCKAIGNPTPNIYWIK----NQTKVDMS- 154
Query: 60 NDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGE 94
N R G L I+ ++ ED GKY CV NS+G E
Sbjct: 155 NPRYSLKDGFLQIENSREEDQGKYECVAENSMGTE 189
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
PP I ++ + G F C A G+P P I W +GKK+
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKV 47
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 57/140 (40%), Gaps = 17/140 (12%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE-----------PVFRIDSV 188
+P Q + G A F C G+P +I W K+GK V + RI+ V
Sbjct: 14 KPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPV 73
Query: 189 RK-EDKGMYQCVIRN---EQESAQASGELKLGGRFDP--PVIKESFSDETLNPGPNYYFK 242
R D Y+CV N + SA A+ + G + PVI + + G
Sbjct: 74 RAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMT 133
Query: 243 CIASGNPTPEISWYLDGKKL 262
C A GNPTP I W + K+
Sbjct: 134 CKAIGNPTPNIYWIKNQTKV 153
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 54/133 (40%), Gaps = 31/133 (23%)
Query: 78 EDSGKYLCVVNNSVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLA 136
D Y CV N VG S + LT+ PA F P +
Sbjct: 77 RDDAPYECVAENGVGDAVSADATLTIYEGDKT-------------PAGF-------PVIT 116
Query: 137 AGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVR 189
G P + I+ G TCK GNP I W+K+ V D + P + +I++ R
Sbjct: 117 QG--PGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKV-DMSNPRYSLKDGFLQIENSR 173
Query: 190 KEDKGMYQCVIRN 202
+ED+G Y+CV N
Sbjct: 174 EEDQGKYECVAEN 186
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
Query: 5 DLKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPL 59
D P GF T + +I G + + C+A N W K + KV +
Sbjct: 106 DKTPAGFPVITQGPGTRVIEV----GHTVLMTCKAIGNPTPNIYWIK----NQTKVDMS- 156
Query: 60 NDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGE 94
N R G L I+ ++ ED GKY CV NS+G E
Sbjct: 157 NPRYSLKDGFLQIENSREEDQGKYECVAENSMGTE 191
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 216 GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
G PP I ++ + G F C A G+P P I W +GKK+
Sbjct: 3 GSAAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKV 49
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 35/146 (23%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVR-------------- 189
Q G A+ C+ +P +SW+ HNE V I R
Sbjct: 12 QEFKQGEDAEVVCRVSSSPAPAVSWLY-------HNEEVTTISDNRFAMLANNNLQILNI 64
Query: 190 -KEDKGMYQCVIRNEQESAQASGELKLGGRFD----PPVI---KESFSDETLNPGPNYYF 241
K D+G+Y+C R +A GE+ PP I ++SF + T G F
Sbjct: 65 NKSDEGIYRCEGR-----VEARGEIDFRDIIVIVNVPPAISMPQKSF-NATAERGEEMTF 118
Query: 242 KCIASGNPTPEISWYLDGKKLVNAER 267
C ASG+P P ISW+ +GK + E+
Sbjct: 119 SCRASGSPEPAISWFRNGKLIEENEK 144
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------IDSVRKEDKGMYQ 197
T + G F+C+ G+P ISW ++GK + ++ + + + + ++ D G Y
Sbjct: 109 TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYV 168
Query: 198 CVIRNE 203
C N+
Sbjct: 169 CRATNK 174
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 42/211 (19%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFT 126
+ TL + + D+G+Y C +N G +S L V P
Sbjct: 60 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP--------------------- 98
Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE------ 180
P +EP+ + + ++ CK G+P + W KD + + ++
Sbjct: 99 ------PRFIKKLEPS-RIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV 151
Query: 181 ---PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI-KESFSDETLNPG 236
V + ++ ED G Y C N SA +S LK+ +PPV K+ ETL G
Sbjct: 152 ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK---EPPVFRKKPHPVETLK-G 207
Query: 237 PNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ + +C G P ++SW+ D ++L + ++
Sbjct: 208 ADVHLECELQGTPPFQVSWHKDKRELRSGKK 238
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 12/137 (8%)
Query: 131 ISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD---------HNEP 181
++PP ++P + G F C G I+W KD + + N
Sbjct: 3 MAPPFF-DLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
+ V K D G Y C N + + S +LG + P IK+ + + +
Sbjct: 62 TLTVLKVTKGDAGQYTCYASN--VAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRY 119
Query: 242 KCIASGNPTPEISWYLD 258
+C G+P ++ WY D
Sbjct: 120 ECKIGGSPEIKVLWYKD 136
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 51/148 (34%), Gaps = 38/148 (25%)
Query: 77 VEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLA 136
VEDSG Y C +N+ G S T L V PP+
Sbjct: 164 VEDSGDYTCEAHNAAGSASSSTSLKVK----------------------------EPPVF 195
Query: 137 AGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKD------GKPVPDHNEPVF---RIDS 187
V+T+ G C+ +G P +SW KD GK +E I +
Sbjct: 196 RKKPHPVETLK-GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILN 254
Query: 188 VRKEDKGMYQCVIRNEQESAQASGELKL 215
V D G YQC N+ S G + L
Sbjct: 255 VDSADIGEYQCKASNDVGSYTCVGSITL 282
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 99/268 (36%), Gaps = 52/268 (19%)
Query: 10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLN--- 60
FKA SVS + G E F + C ++ + W + E S K+ N
Sbjct: 207 AFKAVPVVSVSKASYLLREG-EEFTVTCTIKDVSSSVYSTWKR--ENSQTKLQEKYNSWH 263
Query: 61 --DRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
D + TL I A+V DSG ++C NN+ G +V T L V + P + T
Sbjct: 264 HGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTV 323
Query: 119 F---GRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV 175
F G +YE P Q I R FT K+E P
Sbjct: 324 FVNDGENVDLIVEYEAFPKPEHQ-----QWIYMNR--TFTDKWEDYP------------- 363
Query: 176 PDHNEPVFR------IDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFS 229
NE R + ++ + G Y ++ N +A + + + + P ++
Sbjct: 364 KSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK--PEIL----- 416
Query: 230 DETLNPGPNYYFKCIASGNPTPEISWYL 257
T + N +C+A+G P P I WY
Sbjct: 417 --TYDRLVNGMLQCVAAGFPEPTIDWYF 442
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 99/268 (36%), Gaps = 52/268 (19%)
Query: 10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLN--- 60
FKA SVS + G E F + C ++ + W + E S K+ N
Sbjct: 182 AFKAVPVVSVSKASYLLREG-EEFTVTCTIKDVSSSVYSTWKR--ENSQTKLQEKYNSWH 238
Query: 61 --DRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
D + TL I A+V DSG ++C NN+ G +V T L V + P + T
Sbjct: 239 HGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTV 298
Query: 119 F---GRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV 175
F G +YE P Q I R FT K+E P
Sbjct: 299 FVNDGENVDLIVEYEAFPKPEHQ-----QWIYMNR--TFTDKWEDYP------------- 338
Query: 176 PDHNEPVFR------IDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFS 229
NE R + ++ + G Y ++ N +A + + + + P ++
Sbjct: 339 KSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK--PEIL----- 391
Query: 230 DETLNPGPNYYFKCIASGNPTPEISWYL 257
T + N +C+A+G P P I WY
Sbjct: 392 --TYDRLVNGMLQCVAAGFPEPTIDWYF 417
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 25/139 (17%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI-------------D 186
PT + PA CK EG P TI W KDG+PV + + R+
Sbjct: 15 HPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQ 74
Query: 187 SVRKEDKGMYQCVIRNE-QESAQASGELKLGGRFDPPVIKESF----SDETLNPGPNYYF 241
+++D G Y CV +N ++ L++ V+++ F D + G
Sbjct: 75 GKKEQDGGEYWCVAKNRVGQAVSRHASLQIA------VLRDDFRVEPKDTRVAKGETALL 128
Query: 242 KC-IASGNPTPEISWYLDG 259
+C G P P + W DG
Sbjct: 129 ECGPPKGIPEPTLIWIKDG 147
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 63/178 (35%), Gaps = 48/178 (26%)
Query: 44 WFKFIEGSSRKVAVPLNDRVKQVSGTLI----IKEAKVEDSGKYLCVVNNSVGGESVETV 99
WFK +G + RV+ G L ++ K +D G+Y CV N VG
Sbjct: 43 WFK--DGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQ------ 94
Query: 100 LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKY- 158
A ++ V DF VEP + G A C
Sbjct: 95 ---AVSRHASLQIAVLRDDFR------------------VEPKDTRVAKGETALLECGPP 133
Query: 159 EGNPVKTISWMKDGKPVPDHNEPVF--------------RIDSVRKEDKGMYQCVIRN 202
+G P T+ W+KDG P+ D F I +V D+G Y+C+ +N
Sbjct: 134 KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQN 191
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 215 LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
L G++ P I E +D + C G P P I W+ DG+ + E+
Sbjct: 3 LAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEK 55
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 25/139 (17%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI-------------D 186
PT + PA CK EG P TI W KDG+PV + + R+
Sbjct: 15 HPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQ 74
Query: 187 SVRKEDKGMYQCVIRNE-QESAQASGELKLGGRFDPPVIKESF----SDETLNPGPNYYF 241
+++D G Y CV +N ++ L++ V+++ F D + G
Sbjct: 75 GKKEQDGGEYWCVAKNRVGQAVSRHASLQIA------VLRDDFRVEPKDTRVAKGETALL 128
Query: 242 KC-IASGNPTPEISWYLDG 259
+C G P P + W DG
Sbjct: 129 ECGPPKGIPEPTLIWIKDG 147
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 63/178 (35%), Gaps = 48/178 (26%)
Query: 44 WFKFIEGSSRKVAVPLNDRVKQVSGTLI----IKEAKVEDSGKYLCVVNNSVGGESVETV 99
WFK +G + RV+ G L ++ K +D G+Y CV N VG
Sbjct: 43 WFK--DGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQ------ 94
Query: 100 LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKY- 158
A ++ V DF VEP + G A C
Sbjct: 95 ---AVSRHASLQIAVLRDDFR------------------VEPKDTRVAKGETALLECGPP 133
Query: 159 EGNPVKTISWMKDGKPVPDHNEPVF--------------RIDSVRKEDKGMYQCVIRN 202
+G P T+ W+KDG P+ D F I +V D+G Y+C+ +N
Sbjct: 134 KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQN 191
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 215 LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
L G++ P I E +D + C G P P I W+ DG+ + E+
Sbjct: 3 LAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEK 55
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 153 QFTCKYEGNPVKTISWMKDGKPVPD----------HNEPVFRIDSVRKEDKGMYQCVIRN 202
+F C GNP +ISW+K+G+ H + ++SV D+G Y CV+ N
Sbjct: 142 RFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVEN 201
Query: 203 EQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 255
+ S + + L + R P+++ +++T G + F C + P I W
Sbjct: 202 KFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 256
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 241 FKCIASGNPTPEISWYLDGKKLVNAER 267
F+C A+GNPTP ISW +G++ R
Sbjct: 143 FRCPAAGNPTPSISWLKNGREFRGEHR 169
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 55/163 (33%), Gaps = 46/163 (28%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
+++ +L+++ D G Y CVV N G S+ T+ + P +Q
Sbjct: 174 KLRHQQWSLVMESVVPSDRGNYTCVVENKFG--SIRQTYTLDVLERSPHRPILQ------ 225
Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK----------- 170
AG+ P QT G +F CK + I W+K
Sbjct: 226 ---------------AGL-PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGP 269
Query: 171 DGKP-----------VPDHNEPVFRIDSVRKEDKGMYQCVIRN 202
DG P D V + +V ED G Y C+ N
Sbjct: 270 DGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGN 312
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 38 EAQENM-WFKFIEGSSRKVA---VPLNDRVKQVSGTLIIKEAKV--------EDSGKYLC 85
+AQ ++ W K +E + KV P +K KE +V ED+G+Y C
Sbjct: 249 DAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTC 308
Query: 86 VVNNSVG 92
+ NS+G
Sbjct: 309 LAGNSIG 315
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 31/142 (21%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVR 189
EP Q G A F C+ G+P ++W K GK V V RI +R
Sbjct: 12 EPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLR 71
Query: 190 K-EDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKES-----FSDETLNPGPNYYFK- 242
D+ +Y+CV +N + GE+ + + V++E F + + P +
Sbjct: 72 TPRDENVYECVAQN------SVGEITVHAKLT--VLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 243 ------CIASGNPTPEISWYLD 258
C ASGNP PEI+W+ D
Sbjct: 124 RTATMLCAASGNPDPEITWFKD 145
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 50/135 (37%), Gaps = 35/135 (25%)
Query: 79 DSGKYLCVVNNSVGGESVETVLTVTA--PLAAGVEPTVQTIDFGRPAQFTCKYEISPPLA 136
D Y CV NSVG +V LTV L +G ID G
Sbjct: 75 DENVYECVAQNSVGEITVHAKLTVLREDQLPSGFP----NIDMG---------------- 114
Query: 137 AGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDS 187
P ++ ++ R A C GNP I+W KD PV +I+S
Sbjct: 115 ----PQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIES 170
Query: 188 VRKEDKGMYQCVIRN 202
+ D+G Y+CV N
Sbjct: 171 SEETDQGKYECVATN 185
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 35 LLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKYLCVVN 88
+LC A N WFK + N R+KQ+ SG L I+ ++ D GKY CV
Sbjct: 128 MLCAASGNPDPEITWFKDFLPVDPSAS---NGRIKQLRSGALQIESSEETDQGKYECVAT 184
Query: 89 NSVG 92
NS G
Sbjct: 185 NSAG 188
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 220 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+PP + D+ G F C A+G+P P ++W GKK VN++R
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKK-VNSQR 51
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 37/169 (21%)
Query: 48 IEGSSRKVAVPLND---RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104
I + K+ + L D +++ L I + D G Y C NN VGG +VE+
Sbjct: 39 ISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGG-AVES----CG 93
Query: 105 PLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVK 164
L ++P + PP+ V+ I+ G A C GNP
Sbjct: 94 ALQVKMKPKIT----------------RPPI------NVKIIE-GLKAVLPCTTMGNPKP 130
Query: 165 TISWMKDGKPVPDHNEPV------FRIDSVRKEDKGMYQCVIRNEQESA 207
++SW+K + +++ RI +V+KED G Y+CV +N +A
Sbjct: 131 SVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA 179
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 152 AQFTCKYEGNPVKTISWMK--------DGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE 203
A F C E P ISW + D + N + I SV D G+Y C N
Sbjct: 25 ATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNG 84
Query: 204 QESA-QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 255
A ++ G L++ + P + + + + + G C GNP P +SW
Sbjct: 85 VGGAVESCGALQV--KMKPKITRPPINVKIIE-GLKAVLPCTTMGNPKPSVSW 134
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 47 FIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKYLCVVNNSVG 92
+I+G S A+ N R+ + SG+L I + ED+G+Y CV NS+G
Sbjct: 134 WIKGDS---ALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLG 177
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 153 QFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRN 202
+F C GNP +ISW+K+G+ H + ++SV D+G Y CV+ N
Sbjct: 34 RFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVEN 93
Query: 203 EQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 255
+ S + + L + R P+++ +++T G + F C + P I W
Sbjct: 94 KFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 148
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA-----PLAAGVEPTVQT 116
+++ +L+++ D G Y CVV N G L V P+ P QT
Sbjct: 66 KLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQT 125
Query: 117 IDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTI--SWMKDGKP 174
G +F CK + + +P +Q + +G P T+ SW+ +
Sbjct: 126 AVLGSDVEFHCK------VYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVE 179
Query: 175 VPDHNEPVFRIDSVRKEDKGMYQCVIRN 202
+ R+ +V + D G Y C N
Sbjct: 180 A----DVRLRLANVSERDGGEYLCRATN 203
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 241 FKCIASGNPTPEISWYLDGKKLVNAER 267
F+C A+GNPTP ISW +G++ R
Sbjct: 35 FRCPAAGNPTPSISWLKNGREFRGEHR 61
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 31/142 (21%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVR 189
EP Q G A F C+ G+P ++W K GK V V RI +R
Sbjct: 12 EPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLR 71
Query: 190 K-EDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKES-----FSDETLNPGPNYYFK- 242
D+ +Y+CV +N + GE+ + + V++E F + + P +
Sbjct: 72 TPRDENVYECVAQN------SVGEITVHAKLT--VLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 243 ------CIASGNPTPEISWYLD 258
C ASGNP PEI+W+ D
Sbjct: 124 RTATMLCAASGNPDPEITWFKD 145
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 50/135 (37%), Gaps = 35/135 (25%)
Query: 79 DSGKYLCVVNNSVGGESVETVLTVTA--PLAAGVEPTVQTIDFGRPAQFTCKYEISPPLA 136
D Y CV NSVG +V LTV L +G ID G
Sbjct: 75 DENVYECVAQNSVGEITVHAKLTVLREDQLPSGFP----NIDMG---------------- 114
Query: 137 AGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDS 187
P ++ ++ R A C GNP I+W KD PV +I+S
Sbjct: 115 ----PQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIES 170
Query: 188 VRKEDKGMYQCVIRN 202
+ D+G Y+CV N
Sbjct: 171 SEETDQGKYECVATN 185
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 35 LLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKYLCVVN 88
+LC A N WFK + N R+KQ+ SG L I+ ++ D GKY CV
Sbjct: 128 MLCAASGNPDPEITWFKDFLPVDPSAS---NGRIKQLRSGALQIESSEETDQGKYECVAT 184
Query: 89 NSVG 92
NS G
Sbjct: 185 NSAG 188
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 220 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+PP + D+ G F C A+G+P P ++W GKK VN++R
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKK-VNSQR 51
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 39/134 (29%)
Query: 152 AQFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRK-EDKGMYQCVI 200
A F C+ G+P ++W K GK V V RI +R D+ +Y+CV
Sbjct: 24 ASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIYECVA 83
Query: 201 RNEQESAQASGELKLGGRFDPPVIKESFSDETLNPG-PNY---------------YFKCI 244
+N GE+ + + V++E + L PG PN C
Sbjct: 84 QNPH------GEVTVHAKLT--VLRE----DQLPPGFPNIDMGPQLKVVERTRTATMLCA 131
Query: 245 ASGNPTPEISWYLD 258
ASGNP PEI+W+ D
Sbjct: 132 ASGNPDPEITWFKD 145
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 49/134 (36%), Gaps = 33/134 (24%)
Query: 79 DSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
D Y CV N G +V LTV + P ID G
Sbjct: 75 DENIYECVAQNPHGEVTVHAKLTVLR--EDQLPPGFPNIDMG------------------ 114
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVR--------- 189
P ++ ++ R A C GNP I+W KD PV D + RI +R
Sbjct: 115 --PQLKVVERTRTATMLCAASGNPDPEITWFKDFLPV-DPSTSNGRIKQLRSGGLQIESS 171
Query: 190 -KEDKGMYQCVIRN 202
+ D+G Y+CV N
Sbjct: 172 EETDQGKYECVASN 185
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 35 LLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKYLCVVN 88
+LC A N WFK + N R+KQ+ SG L I+ ++ D GKY CV +
Sbjct: 128 MLCAASGNPDPEITWFKDFLPVDPSTS---NGRIKQLRSGGLQIESSEETDQGKYECVAS 184
Query: 89 NSVG 92
NS G
Sbjct: 185 NSAG 188
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
PPV + D+ G F C A+G+P P ++W GKK VN++R
Sbjct: 6 PPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKK-VNSQR 51
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------DSV 188
+E + + +F C GNP+ T+ W+K+GK +H +++ +SV
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 75
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIAS 246
DKG Y CV+ NE S + L + R+ P+++ ++ + G + F C
Sbjct: 76 VPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVY 135
Query: 247 GNPTPEISW 255
+ P I W
Sbjct: 136 SDAQPHIQW 144
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 16/148 (10%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP------LAAGVEPTVQ 115
+V+ +LI++ D G Y CVV N G + L V L AG+
Sbjct: 62 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANAS 121
Query: 116 TIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKP 174
T+ G +F CK + + +P +Q I + KY + + + +K G
Sbjct: 122 TV-VGGDVEFVCK------VYSDAQPHIQWIK--HVEKNGSKYGPDGLPYLKVLKAAGVN 172
Query: 175 VPDHNEPVFRIDSVRKEDKGMYQCVIRN 202
D V I +V ED G Y C+ N
Sbjct: 173 TTDKEIEVLYIRNVTFEDAGEYTCLAGN 200
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 241 FKCIASGNPTPEISWYLDGKKLVNAER 267
F+C A GNP P + W +GK+ R
Sbjct: 31 FRCPAGGNPMPTMRWLKNGKEFKQEHR 57
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 35 LLCEAQENM-WFKFIEGSSRKV------------AVPLNDRVKQVSGTLIIKEAKVEDSG 81
+ +AQ ++ W K +E + K A +N K++ L I+ ED+G
Sbjct: 134 VYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIE-VLYIRNVTFEDAG 192
Query: 82 KYLCVVNNSVGGESVETVLTV 102
+Y C+ NS+G LTV
Sbjct: 193 EYTCLAGNSIGISFHSAWLTV 213
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------IDSVRKEDKGMYQ 197
T + G F+C+ G+P ISW ++GK + ++ + + + + ++ D G Y
Sbjct: 15 TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYV 74
Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 255
C N+ + L++ P +I+ +ET C A G P PEI+W
Sbjct: 75 CRATNKAGEDEKQAFLQV--FVQPHIIQ--LKNETTYENGQVTLVCDAEGEPIPEITW 128
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 232 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
T G F C ASG+P P ISW+ +GK + E+
Sbjct: 15 TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK 50
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 35 LLCEAQ-----ENMW------FKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
L+C+A+ E W F F EG + + + + + S +L IK+ K+ DSG+Y
Sbjct: 114 LVCDAEGEPIPEITWKRAVDGFTFTEGD-KSLDGRIEVKGQHGSSSLHIKDVKLSDSGRY 172
Query: 84 LCVVNNSVGGESVETVLTV 102
C + +GG L +
Sbjct: 173 DCEAASRIGGHQKSMYLDI 191
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 124 QFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF 183
Q T ++P + +E QT G + +C GNP I W KD + + + + V
Sbjct: 2 QLTVLERVAPTITGNLEN--QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL 59
Query: 184 R-------IDSVRKEDKGMYQC 198
+ I VRKED+G+Y C
Sbjct: 60 KDGNRNLTIRRVRKEDEGLYTC 81
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 263
P I + ++T + G + C ASGNP P+I W+ D + LV
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLV 52
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
GES + C A N MWFK E + L D + L I+ + ED G Y
Sbjct: 25 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN----LTIRRVRKEDEGLYT 80
Query: 85 CVVNNSVGGESVETVLTV 102
C + +G VE +
Sbjct: 81 CQACSVLGCAKVEAFFII 98
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 135 LAAGV--EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD---HN------EPVF 183
LAA + +P T+ G A+F+C +G PV T++W++ G+ + H + F
Sbjct: 13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF 72
Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
I SV+ D+G Y V+ N + +A L +
Sbjct: 73 EISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 232 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
T+ G + F C G P P ++W G+ L + R
Sbjct: 25 TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSAR 60
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 31/184 (16%)
Query: 30 GESFALLCEAQ----ENMWFKFIEGSSRKVAVPLNDR--VKQVSGTLIIKEAKVEDSGKY 83
G+ LLC+ +++ ++++ + V + ++ R V Q +G L I + D G Y
Sbjct: 23 GKGMVLLCDPPYHFPDDLSYRWLL-NEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNY 81
Query: 84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
C V++ ++V + PL E T + QF Y +
Sbjct: 82 SCFVSSP---SITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL------------ 126
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE-----PVFRIDSVRKEDKGMYQC 198
G+ C GNPV I W K +P+P E V +I +++ ED+G+Y+C
Sbjct: 127 ----MGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYEC 182
Query: 199 VIRN 202
N
Sbjct: 183 EAEN 186
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 185 IDSVRKEDKGMYQCVIRNEQESAQASGEL-------KLGGRFDPPVIKESFSDETLNPGP 237
I +V DKG Y C + + + + + + P I F D G
Sbjct: 70 IANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQ 129
Query: 238 NYYFKCIASGNPTPEISW 255
N +C A GNP P+I W
Sbjct: 130 NVTLECFALGNPVPDIRW 147
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------DSV 188
+E + + +F C GNP+ T+ W+K+GK +H +++ +SV
Sbjct: 14 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 73
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIAS 246
DKG Y CV+ NE S + L + R P+++ ++ + G + F C
Sbjct: 74 VPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVY 133
Query: 247 GNPTPEISW 255
+ P I W
Sbjct: 134 SDAQPHIQW 142
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 16/148 (10%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP------LAAGVEPTVQ 115
+V+ +LI++ D G Y CVV N G + L V L AG+
Sbjct: 60 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANAS 119
Query: 116 TIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKP 174
T+ G +F CK + + +P +Q I + KY + + + +K G
Sbjct: 120 TV-VGGDVEFVCK------VYSDAQPHIQWIK--HVEKNGSKYGPDGLPYLKVLKAAGVN 170
Query: 175 VPDHNEPVFRIDSVRKEDKGMYQCVIRN 202
D V I +V ED G Y C+ N
Sbjct: 171 TTDKEIEVLYIRNVTFEDAGEYTCLAGN 198
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 241 FKCIASGNPTPEISWYLDGKKLVNAER 267
F+C A GNP P + W +GK+ R
Sbjct: 29 FRCPAGGNPMPTMRWLKNGKEFKQEHR 55
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 44 WFKFIEGSSRKV------------AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV 91
W K +E + K A +N K++ L I+ ED+G+Y C+ NS+
Sbjct: 142 WIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIE-VLYIRNVTFEDAGEYTCLAGNSI 200
Query: 92 GGESVETVLTV 102
G LTV
Sbjct: 201 GISFHSAWLTV 211
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------DSV 188
+E + + +F C GNP+ T+ W+K+GK +H +++ +SV
Sbjct: 15 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 74
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIAS 246
DKG Y CV+ NE S + L + R P+++ ++ + G + F C
Sbjct: 75 VPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVY 134
Query: 247 GNPTPEISW 255
+ P I W
Sbjct: 135 SDAQPHIQW 143
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 16/148 (10%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP------LAAGVEPTVQ 115
+V+ +LI++ D G Y CVV N G + L V L AG+
Sbjct: 61 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANAS 120
Query: 116 TIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKP 174
T+ G +F CK + + +P +Q I + KY + + + +K G
Sbjct: 121 TV-VGGDVEFVCK------VYSDAQPHIQWIK--HVEKNGSKYGPDGLPYLKVLKAAGVN 171
Query: 175 VPDHNEPVFRIDSVRKEDKGMYQCVIRN 202
D V I +V ED G Y C+ N
Sbjct: 172 TTDKEIEVLYIRNVTFEDAGEYTCLAGN 199
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 241 FKCIASGNPTPEISWYLDGKKLVNAER 267
F+C A GNP P + W +GK+ R
Sbjct: 30 FRCPAGGNPMPTMRWLKNGKEFKQEHR 56
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 35 LLCEAQENM-WFKFIEGSSRKV------------AVPLNDRVKQVSGTLIIKEAKVEDSG 81
+ +AQ ++ W K +E + K A +N K++ L I+ ED+G
Sbjct: 133 VYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIE-VLYIRNVTFEDAG 191
Query: 82 KYLCVVNNSVGGESVETVLTV 102
+Y C+ NS+G LTV
Sbjct: 192 EYTCLAGNSIGISFHSAWLTV 212
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------DSV 188
+E + + +F C GNP+ T+ W+K+GK +H +++ +SV
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 75
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIAS 246
DKG Y CV+ NE S + L + R P+++ ++ + G + F C
Sbjct: 76 VPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVY 135
Query: 247 GNPTPEISW 255
+ P I W
Sbjct: 136 SDAQPHIQW 144
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 16/148 (10%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP------LAAGVEPTVQ 115
+V+ +LI++ D G Y CVV N G + L V L AG+
Sbjct: 62 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANAS 121
Query: 116 TIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKP 174
T+ G +F CK + + +P +Q I + KY + + + +K G
Sbjct: 122 TV-VGGDVEFVCK------VYSDAQPHIQWIK--HVEKNGSKYGPDGLPYLKVLKAAGVN 172
Query: 175 VPDHNEPVFRIDSVRKEDKGMYQCVIRN 202
D V I +V ED G Y C+ N
Sbjct: 173 TTDKEIEVLYIRNVTFEDAGEYTCLAGN 200
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 241 FKCIASGNPTPEISWYLDGKKLVNAER 267
F+C A GNP P + W +GK+ R
Sbjct: 31 FRCPAGGNPMPTMRWLKNGKEFKQEHR 57
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 44 WFKFIEGSSRKV------------AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV 91
W K +E + K A +N K++ L I+ ED+G+Y C+ NS+
Sbjct: 144 WIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIE-VLYIRNVTFEDAGEYTCLAGNSI 202
Query: 92 GGESVETVLTV 102
G LTV
Sbjct: 203 GISFHSAWLTV 213
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------DSV 188
+E + + +F C GNP+ T+ W+K+GK +H +++ +SV
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 75
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIAS 246
DKG Y CV+ NE S + L + R P+++ ++ + G + F C
Sbjct: 76 VPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVY 135
Query: 247 GNPTPEISW 255
+ P I W
Sbjct: 136 SDAQPHIQW 144
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 16/148 (10%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT--AP----LAAGVEPTVQ 115
+V+ +LI++ D G Y CVV N G + L V +P L AG+
Sbjct: 62 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANAS 121
Query: 116 TIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKP 174
T+ G +F CK + + +P +Q I + KY + + + +K G
Sbjct: 122 TV-VGGDVEFVCK------VYSDAQPHIQWIK--HVEKNGSKYGPDGLPYLKVLKAAGVN 172
Query: 175 VPDHNEPVFRIDSVRKEDKGMYQCVIRN 202
D V I +V ED G Y C+ N
Sbjct: 173 TTDKEIEVLYIRNVTFEDAGEYTCLAGN 200
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 241 FKCIASGNPTPEISWYLDGKKLVNAER 267
F+C A GNP P + W +GK+ R
Sbjct: 31 FRCPAGGNPMPTMRWLKNGKEFKQEHR 57
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 44 WFKFIEGSSRKV------------AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV 91
W K +E + K A +N K++ L I+ ED+G+Y C+ NS+
Sbjct: 144 WIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIE-VLYIRNVTFEDAGEYTCLAGNSI 202
Query: 92 GGESVETVLTV 102
G LTV
Sbjct: 203 GISFHSAWLTV 213
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------DSV 188
+E + + +F C GNP+ T+ W+K+GK +H +++ +SV
Sbjct: 24 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 83
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIAS 246
DKG Y CV+ NE S + L + R P+++ ++ + G + F C
Sbjct: 84 VPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVY 143
Query: 247 GNPTPEISW 255
+ P I W
Sbjct: 144 SDAQPHIQW 152
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 57/174 (32%), Gaps = 44/174 (25%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
+V+ +LI++ D G Y CVV N G +I+
Sbjct: 70 KVRNQHWSLIMESVVPSDKGNYTCVVENEYG-----------------------SINHTY 106
Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK----------- 170
+ P L AG+ T+ G +F CK + I W+K
Sbjct: 107 HLDVVERSRHRPILQAGLPANASTV-VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGP 165
Query: 171 DGKP---------VPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
DG P + N V + +V + D G Y C + N A S L +
Sbjct: 166 DGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 241 FKCIASGNPTPEISWYLDGKKLVNAER 267
F+C A GNP P + W +GK+ R
Sbjct: 39 FRCPAGGNPMPTMRWLKNGKEFKQEHR 65
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD---HN------EPVFRIDSVR 189
+P T+ G A+F+C +G PV T++W++ G+ + H + F I SV+
Sbjct: 13 TKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQ 72
Query: 190 KEDKGMYQCVIRNEQESAQASGELKL 215
D+G Y V+ N + +A L +
Sbjct: 73 ASDEGNYSVVVENSEGKQEAEFTLTI 98
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 232 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
T+ G + F C G P P ++W G+ L + R
Sbjct: 19 TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSAR 54
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 124 QFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF 183
Q T ++P + +E QT G + +C GNP I W KD + + + + V
Sbjct: 658 QLTVLERVAPTITGNLEN--QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL 715
Query: 184 R-------IDSVRKEDKGMYQC 198
+ I VRKED+G+Y C
Sbjct: 716 KDGNRNLTIRRVRKEDEGLYTC 737
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 91/235 (38%), Gaps = 46/235 (19%)
Query: 45 FKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVG-GESVETVLTVT 103
F IEG ++ V+ TL+I+ A V S Y C N VG GE V +
Sbjct: 504 FALIEGKNKTVS------------TLVIQAANV--SALYKCEAVNKVGRGERVISFHVTR 549
Query: 104 AP---LAAGVEPTVQ-------TIDFGRPAQFTCKYEISP---PLAAGVEPTVQTIDFGR 150
P L ++PT Q T D T Y++ P P+ G PT +
Sbjct: 550 GPEITLQPDMQPTEQESVSLWCTADRSTFENLTW-YKLGPQPLPIHVGELPTPVCKNLDT 608
Query: 151 PAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS 210
+ N I M+ + + +D+G Y C+ ++ + +
Sbjct: 609 LWKLNATMFSNSTNDILIME--------------LKNASLQDQGDYVCLAQDRKTKKRHC 654
Query: 211 --GELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 263
+L + R P I + ++T + G + C ASGNP P+I W+ D + LV
Sbjct: 655 VVRQLTVLERV-APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLV 708
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 8/129 (6%)
Query: 135 LAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE----PVFRIDSVRK 190
+G+E V+ G + KY G P I W K+G P+ ++ V I V +
Sbjct: 332 FGSGMESLVEA-TVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSE 390
Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSD--ETLNPGPNYYFKCIASGN 248
D G Y ++ N + S + L P + ++S ++ G C
Sbjct: 391 RDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAI 450
Query: 249 PTP-EISWY 256
P P I WY
Sbjct: 451 PPPHHIHWY 459
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
GES + C A N MWFK E + L D + L I+ + ED G Y
Sbjct: 681 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN----LTIRRVRKEDEGLYT 736
Query: 85 CVVNNSVGGESVETVLTV 102
C + +G VE +
Sbjct: 737 CQACSVLGCAKVEAFFII 754
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 183 FRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIK-----ESFSDETLNPGP 237
ID V + D+G+Y C + + + S +++ + P + ES + T+ G
Sbjct: 292 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV---HEKPFVAFGSGMESLVEATV--GE 346
Query: 238 NYYFKCIASGNPTPEISWYLDG 259
G P PEI WY +G
Sbjct: 347 RVRIPAKYLGYPPPEIKWYKNG 368
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------DSV 188
+E + + +F C GNP+ T+ W+K+GK +H +++ +SV
Sbjct: 24 MEKRLHAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 83
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIAS 246
DKG Y CV+ NE S + L + R P+++ ++ + G + F C
Sbjct: 84 VPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVY 143
Query: 247 GNPTPEISW 255
+ P I W
Sbjct: 144 SDAQPHIQW 152
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 16/160 (10%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP------LAAGVEPTVQ 115
+V+ +LI++ D G Y CVV N G + L V L AG+
Sbjct: 70 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANAS 129
Query: 116 TIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV 175
T+ G +F CK + + +P +Q I + KY + + + +K +
Sbjct: 130 TV-VGGDVEFVCK------VYSDAQPHIQWIK--HVEKNGSKYGPDGLPYLKVLKHSG-I 179
Query: 176 PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
N V + +V + D G Y C + N A S L +
Sbjct: 180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 241 FKCIASGNPTPEISWYLDGKKLVNAER 267
F+C A GNP P + W +GK+ R
Sbjct: 39 FRCPAGGNPMPTMRWLKNGKEFKQEHR 65
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 68/170 (40%), Gaps = 22/170 (12%)
Query: 48 IEGSSRKVAVPLNDRVKQ-VSGTLI---IKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
+ S A+ +DRVK V+G I I E D GKY+ + + G L+
Sbjct: 35 VNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ 94
Query: 104 APLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPV 163
A A E F R Q + + G+ P V TI G+ TC G+P
Sbjct: 95 AYDEAYAE-------FQRLKQAAIAEKNRARVLGGL-PDVVTIQEGKALNLTCNVWGDPP 146
Query: 164 KTISWMKDGKPVP--DH--------NEPVFRIDSVRKEDKGMYQCVIRNE 203
+SW+K+ K + DH F I+ V D G Y V++N+
Sbjct: 147 PEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNK 196
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 12/128 (9%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------DSVR 189
E + + +F C GNP T W+K+GK +H +++ +SV
Sbjct: 17 EKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVV 76
Query: 190 KEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASG 247
DKG Y CV+ NE S + L + R P+++ ++ + G + F C
Sbjct: 77 PSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYS 136
Query: 248 NPTPEISW 255
+ P I W
Sbjct: 137 DAQPHIQW 144
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 16/148 (10%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT--AP----LAAGVEPTVQ 115
+V+ +LI + D G Y CVV N G + L V +P L AG+
Sbjct: 62 KVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANAS 121
Query: 116 TIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKP 174
T+ G +F CK + + +P +Q I + KY + + + +K G
Sbjct: 122 TV-VGGDVEFVCK------VYSDAQPHIQWIK--HVEKNGSKYGPDGLPYLKVLKAAGVN 172
Query: 175 VPDHNEPVFRIDSVRKEDKGMYQCVIRN 202
D V I +V ED G Y C+ N
Sbjct: 173 TTDKEIEVLYIRNVTFEDAGEYTCLAGN 200
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 35 LLCEAQENM-WFKFIEGSSRKV------------AVPLNDRVKQVSGTLIIKEAKVEDSG 81
+ +AQ ++ W K +E + K A +N K++ L I+ ED+G
Sbjct: 134 VYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIE-VLYIRNVTFEDAG 192
Query: 82 KYLCVVNNSVGGESVETVLTV 102
+Y C+ NS+G LTV
Sbjct: 193 EYTCLAGNSIGISFHSAWLTV 213
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 241 FKCIASGNPTPEISWYLDGKKLVNAER 267
F+C A GNP P W +GK+ R
Sbjct: 31 FRCPAGGNPXPTXRWLKNGKEFKQEHR 57
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 68/170 (40%), Gaps = 22/170 (12%)
Query: 48 IEGSSRKVAVPLNDRVKQ-VSGTLI---IKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
+ S A+ +DRVK V+G I I E D GKY+ + + G L+
Sbjct: 140 VNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ 199
Query: 104 APLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPV 163
A A E F R Q + + G+ P V TI G+ TC G+P
Sbjct: 200 AYDEAYAE-------FQRLKQAAIAEKNRARVLGGL-PDVVTIQEGKALNLTCNVWGDPP 251
Query: 164 KTISWMKDGKPVP--DH--------NEPVFRIDSVRKEDKGMYQCVIRNE 203
+SW+K+ K + DH F I+ V D G Y V++N+
Sbjct: 252 PEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNK 301
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-------EPVFRIDSVRKEDK 193
P QT+ A CK G+P+ ISW+K+G P + + +I ++R D
Sbjct: 15 PANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDT 74
Query: 194 GMYQCVIRNEQESAQASGELKLGGRFD 220
G Y CV + +SGE D
Sbjct: 75 GTYTCV------ATSSSGETSWSAVLD 95
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 217 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 259
G PP+I + +++TL KC A+G+P P ISW +G
Sbjct: 4 GSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEG 46
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 65 QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
Q GTL IK ++ D+G Y CV +S G S VL VT
Sbjct: 59 QEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 12/128 (9%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------DSVR 189
E + + +F C GNP T W+K+GK +H +++ +SV
Sbjct: 24 EKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVV 83
Query: 190 KEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASG 247
DKG Y CV+ NE S + L + R P+++ ++ + G + F C
Sbjct: 84 PSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYS 143
Query: 248 NPTPEISW 255
+ P I W
Sbjct: 144 DAQPHIQW 151
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 61/160 (38%), Gaps = 16/160 (10%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP------LAAGVEPTVQ 115
+V+ +LI + D G Y CVV N G + L V L AG+
Sbjct: 69 KVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANAS 128
Query: 116 TIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV 175
T+ G +F CK + + +P +Q I + KY + + + +K +
Sbjct: 129 TV-VGGDVEFVCK------VYSDAQPHIQWIK--HVEKNGSKYGPDGLPYLKVLKHSG-I 178
Query: 176 PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
N V + +V + D G Y C + N A S L +
Sbjct: 179 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 218
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 241 FKCIASGNPTPEISWYLDGKKLVNAER 267
F+C A GNP P W +GK+ R
Sbjct: 38 FRCPAGGNPXPTXRWLKNGKEFKQEHR 64
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 41/93 (44%), Gaps = 19/93 (20%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNEP-------------VFRI 185
P+ + G PA CK EG P TI W K G+ V D ++P RI
Sbjct: 15 HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRI 74
Query: 186 DSVRKE--DKGMYQCVIRN---EQESAQASGEL 213
RK D+G+Y CV RN E S AS E+
Sbjct: 75 VHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
PP I E SD ++ G C A G PTP I WY G+++
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERV 50
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 95/247 (38%), Gaps = 76/247 (30%)
Query: 12 KAPTFSSVSDIIRFKKPGGESFALLCE----AQENMWFKFIEGSS-------RKVAVPLN 60
K +++ SD+ + P ES L C + + +KF++GS+ ++ P
Sbjct: 1 KGSVYTAQSDV---QVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYA 57
Query: 61 DRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGES---VETVLTVTAPLAAGVEPTVQTI 117
DRV S + +D+G+Y C+V+ GG++ V LTV P + +PT
Sbjct: 58 DRVTFSSSGITFSSVTRKDNGEYTCMVSEE-GGQNYGEVSIHLTVLVPPS---KPT---- 109
Query: 118 DFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC-KYEGNPVKTISWMKDGKPV- 175
IS P ++ G A TC +++G+P SW KDG +
Sbjct: 110 -------------ISVP---------SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISML 147
Query: 176 ------------------PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG------ 211
P + +F D V D G Y C +N +A S
Sbjct: 148 TADAKKTRAFMNSSFTIDPKSGDLIF--DPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 205
Query: 212 -ELKLGG 217
EL +GG
Sbjct: 206 VELNVGG 212
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 187 SVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFS-DETLNPGPNYYFKCI- 244
SV ++D G Y C++ +E Q GE+ + P K + S ++ G C
Sbjct: 71 SVTRKDNGEYTCMV--SEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSE 128
Query: 245 ASGNPTPEISWYLDGKKLVNAE 266
G+P E SW+ DG ++ A+
Sbjct: 129 HDGSPPSEYSWFKDGISMLTAD 150
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 121 RPAQFTCKYEISPPLAA-GVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP--- 176
R Q T ++ + P+ ++ T T+ TC + I W+ + + +
Sbjct: 96 RRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTC-LSNDIGANIQWLFNSQSLQLTE 154
Query: 177 ----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDP 221
N + RID +++ED G YQC I N S + S +KL FDP
Sbjct: 155 RMTLSQNNSILRIDPIKREDAGEYQCEISNP-VSVRRSNSIKLDIIFDP 202
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 121 RPAQFTCKYEISPPLAA-GVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP--- 176
R Q T ++ + P+ ++ T T+ TC + I W+ + + +
Sbjct: 96 RRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTC-LSNDIGANIQWLFNSQSLQLTE 154
Query: 177 ----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDP 221
N + RID +++ED G YQC I N S + S +KL FDP
Sbjct: 155 RMTLSQNNSILRIDPIKREDAGEYQCEISNP-VSVRRSNSIKLDIIFDP 202
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 30 GESFALLCEAQE------NMWFKFIEGSSRKVAVPLN-----DRVKQVSGTLIIKEAKVE 78
G++F ++C ++ +MW K V N D + TL I A+V+
Sbjct: 203 GDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVD 262
Query: 79 DSGKYLCVVNNSVGGESVETVLTV 102
DSG ++C NN+ G +V T L V
Sbjct: 263 DSGVFMCYANNTFGSANVTTTLKV 286
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 133 PPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVF 183
P + G++ T T+ A+F K G P T W KDGK + D
Sbjct: 7 PVIVTGLQDT--TVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64
Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
I D G+Y C ++N S +S +L +
Sbjct: 65 EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 70 LIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104
L I + DSG Y C V NS G S LT+ A
Sbjct: 64 LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
PVI D T++ F A+G P P W DGK + +
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGK 52
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
Length = 91
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 135 LAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKG 194
L VEPT Q + G C G+P+ W K+ P+ + ++ + V E +G
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQG 63
Query: 195 MYQCVIRNEQESAQA 209
Y C + N+++S +
Sbjct: 64 TYWCHVYNDRDSQDS 78
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 229 SDETLNPGPNYYFKCIASGNPTPEISWY 256
+ + L PG +C+A G+P P W+
Sbjct: 11 TSQKLMPGSTLVLQCVAVGSPIPHYQWF 38
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 68/199 (34%), Gaps = 66/199 (33%)
Query: 34 ALLCEAQ-----ENMW------FKFIEGSSRKVAVPLNDRV----KQVSGTLIIKEAKVE 78
L+C+A+ E W F F EG L+ R+ + S +L IK+ K+
Sbjct: 19 TLVCDAEGEPIPEITWKRAVDGFTFTEGDKS-----LDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 79 DSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
DSG+Y C + +GG L + E +P +
Sbjct: 74 DSGRYDCEAASRIGGHQKSMYLDI---------------------------EYAPKFISN 106
Query: 139 VEPTVQTIDF---GRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFR 184
QTI + G P +C + NP +I W +D +P N + +
Sbjct: 107 -----QTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILE 161
Query: 185 IDSVRKEDKGMYQCVIRNE 203
I D G Y C N
Sbjct: 162 IAPTSDNDFGRYNCTATNH 180
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 68/199 (34%), Gaps = 66/199 (33%)
Query: 34 ALLCEAQ-----ENMW------FKFIEGSSRKVAVPLNDRV----KQVSGTLIIKEAKVE 78
L+C+A+ E W F F EG L+ R+ + S +L IK+ K+
Sbjct: 19 TLVCDAEGEPIPEITWKRAVDGFTFTEGDK-----SLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 79 DSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
DSG+Y C + +GG L + E +P +
Sbjct: 74 DSGRYDCEAASRIGGHQKSMYLDI---------------------------EYAPKFISN 106
Query: 139 VEPTVQTIDF---GRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFR 184
QTI + G P +C + NP +I W +D +P N + +
Sbjct: 107 -----QTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILE 161
Query: 185 IDSVRKEDKGMYQCVIRNE 203
I D G Y C N
Sbjct: 162 IAPTSDNDFGRYNCTATNH 180
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 43/134 (32%), Gaps = 37/134 (27%)
Query: 154 FTCKYEGNPVKTISWMK--------DGKPVPD--------HNEPVFRIDSVRKEDKGMYQ 197
C EG P+ I+W + +G D H I V+ D G Y
Sbjct: 20 LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79
Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYY--------FKCIASGNP 249
C E+A G + D + S++T+ YY C NP
Sbjct: 80 C------EAASRIGGHQKSMYLDIEYAPKFISNQTI-----YYSWEGNPINISCDVKSNP 128
Query: 250 TPEISWYLDGKKLV 263
I W D KLV
Sbjct: 129 PASIHWRRD--KLV 140
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNEPVFR---------IDSVRK 190
P T+ G+ + CK G P +SW DGKPV PD + I+ V
Sbjct: 16 PGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTS 75
Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGRFDPP 222
D G+Y C+ N S EL + + P
Sbjct: 76 RDAGIYTCIATNRAGQNSFSLELVVAAKESGP 107
Score = 33.9 bits (76), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 260
P ++ D T+ G C SG PTP++SW LDGK
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGK 48
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104
+LII+ D+G Y C+ N G S L V A
Sbjct: 67 SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAA 102
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------DSV 188
+E + + +F C GNP+ T+ W+K+GK +H +++ +SV
Sbjct: 13 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 72
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKL 215
DKG Y CV+ NE S + L +
Sbjct: 73 VPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 241 FKCIASGNPTPEISWYLDGKKLVNAER 267
F+C A GNP P + W +GK+ R
Sbjct: 28 FRCPAGGNPMPTMRWLKNGKEFKQEHR 54
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------DSV 188
+E + + +F C GNP+ T+ W+K+GK +H +++ +SV
Sbjct: 17 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 76
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKL 215
DKG Y CV+ NE S + L +
Sbjct: 77 VPSDKGNYTCVVENEYGSINHTYHLDV 103
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 241 FKCIASGNPTPEISWYLDGKKLVNAER 267
F+C A GNP P + W +GK+ R
Sbjct: 32 FRCPAGGNPMPTMRWLKNGKEFKQEHR 58
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------DSV 188
+E + + +F C GNP+ T+ W+K+GK +H +++ +SV
Sbjct: 18 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 77
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKL 215
DKG Y CV+ NE S + L +
Sbjct: 78 VPSDKGNYTCVVENEYGSINHTYHLDV 104
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 241 FKCIASGNPTPEISWYLDGKKLVNAER 267
F+C A GNP P + W +GK+ R
Sbjct: 33 FRCPAGGNPMPTMRWLKNGKEFKQEHR 59
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 54/136 (39%), Gaps = 18/136 (13%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE---PV--------FRIDSVR 189
P T+ G+P + C EG I W+KDG V + ++ PV + SV
Sbjct: 9 PVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 68
Query: 190 KEDKGMYQCVIRN--EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG 247
+ D G Y C + + E E +Q L + G P D + P + C A G
Sbjct: 69 RSDAGRYWCQVEDGGETEISQPVW-LTVEGV---PFFTVEPKDLAVPPNAPFQLSCEAVG 124
Query: 248 NPTP-EISWYLDGKKL 262
P P I W+ K+
Sbjct: 125 PPEPVTIVWWRGTTKI 140
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 35/180 (19%)
Query: 30 GESFALLCEA------QENMWF----KFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
GES LC+ ++ WF + + + ++++V ND S TL I A ++D
Sbjct: 17 GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND---DDSSTLTIYNANIDD 73
Query: 80 SGKYLCVVNNSVGGESVETV-LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
+G Y CVV G +S TV + + L PT Q G A C S P
Sbjct: 74 AGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLP---- 129
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
PT+ K++G + + KD + + N +I ++K D+G Y+C
Sbjct: 130 --PTI-----------IWKHKG---RDVILKKDVRFIVLSNN-YLQIRGIKKTDEGTYRC 172
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 17/143 (11%)
Query: 135 LAAGVEPTVQTIDFGRPAQFTCKYEGNPV-KTISWMK-DGKPVP-----------DHNEP 181
L + P+ I G F C+ G+ K ISW +G+ + D +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 182 VFRIDSVRKEDKGMYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYY 240
I + +D G+Y+CV+ E ++A+ +K+ F + K + + + G +
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI---FQKLMFKNAPTPQEFKEGEDAV 119
Query: 241 FKCIASGNPTPEISWYLDGKKLV 263
C + P I W G+ ++
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVI 142
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGK---PVPDHNEPVFRIDSV--------RKEDKGMYQ 197
G P FTC+ GNP I W KDGK P DH +D +D G Y
Sbjct: 23 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYT 82
Query: 198 CVIRNEQESAQASGELKL 215
+ N Q +G L +
Sbjct: 83 IMAANPQGRISCTGRLMV 100
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 241 FKCIASGNPTPEISWYLDGKKL 262
F C +GNP P+I W+ DGK++
Sbjct: 28 FTCRVAGNPKPKIYWFKDGKQI 49
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGK---PVPDHNEPVFRIDSV--------RKEDKGMYQ 197
G P FTC+ GNP I W KDGK P DH +D +D G Y
Sbjct: 22 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYT 81
Query: 198 CVIRNEQESAQASGEL 213
+ N Q +G L
Sbjct: 82 IMAANPQGRVSCTGRL 97
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 241 FKCIASGNPTPEISWYLDGKKL 262
F C +GNP P+I W+ DGK++
Sbjct: 27 FTCRVAGNPKPKIYWFKDGKQI 48
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 52/150 (34%), Gaps = 36/150 (24%)
Query: 62 RVKQVSGT-LIIKEAKVEDSGKYLCVVNNSVGGESVET--VLTVTAPLAAGVEPTVQTID 118
R + SG L+ K ED G Y C V+N VG + + V+AP
Sbjct: 263 RHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAP------------- 309
Query: 119 FGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH 178
KYE P V + G+ CK G P + W + KP+
Sbjct: 310 ---------KYEQKP-------EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG 353
Query: 179 NEPV----FRIDSVRKEDKGMYQCVIRNEQ 204
V I V+ DKG Y C NE
Sbjct: 354 RATVTDSGLVIKGVKNGDKGYYGCRATNEH 383
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 16/127 (12%)
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRK-------------EDKGM 195
G C Y NP+ ++ K+GK V + P RI + ED+G+
Sbjct: 227 GDVTMIYCMYGSNPMGYPNYFKNGKDV--NGNPEDRITRHNRTSGKRLLFKTTLPEDEGV 284
Query: 196 YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 255
Y C + N Q LKL P ++ + G + C +G P P + W
Sbjct: 285 YTCEVDNGVGKPQKH-SLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVW 343
Query: 256 YLDGKKL 262
+ K L
Sbjct: 344 SHNAKPL 350
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 11/121 (9%)
Query: 60 NDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETV-LTVTAPLAAGVEPTVQTID 118
N +++ G+L+ + D G Y C G S + T +A+ + +T
Sbjct: 54 NAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPI 113
Query: 119 FGRPAQFTCKYEISPP--------LAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK 170
GRP Q C + P +G +P DF R + T +GN TI +
Sbjct: 114 EGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDR--RITAGPDGNLYFTIVTKE 171
Query: 171 D 171
D
Sbjct: 172 D 172
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 133 PPLAAGVEPTVQ-TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFR------ 184
PP + T+ T + + C +G P T++W KDG+P+ + NE +
Sbjct: 11 PPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGS 70
Query: 185 ---IDSVRKEDKGMYQCVIRNEQESAQASGELKLGGR 218
I V K D+ Y C+ N+ A+ LK+ +
Sbjct: 71 ELIIKKVDKSDEAEYICIAENKAGEQDATIHLKVFAK 107
>pdb|2COQ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 108
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 20/96 (20%)
Query: 27 KPGGESFALLCEAQENM-------WFKFIEGSSRKVAVPLNDRVKQV------SGTLIIK 73
K GES + C ++ W++ GS+++ + + R + S +L I+
Sbjct: 12 KETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGSNSASLTIR 71
Query: 74 EAKVEDSGKY------LCVVNNSVG-GESVETVLTV 102
+ +VEDSG Y C N VG E TVLTV
Sbjct: 72 DLRVEDSGTYKCKAYRRCAFNTGVGYKEGAGTVLTV 107
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
VEP + G TC+ P I WMKDG P+P PV + + +D+G Y C
Sbjct: 15 VEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSC 74
Query: 199 VIRNEQESAQAS 210
V + Q S
Sbjct: 75 VATHSSHGPQES 86
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 218 RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
R PP I+ SD +++ G C +G PTPE++W G+K+ + E+
Sbjct: 4 RGIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQ 53
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDS-----------VR 189
P+ +ID G+ C + G P ++W G+ + + F I++ V+
Sbjct: 14 PSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQ 73
Query: 190 KEDKGMYQCVIRNEQESAQASGELKL 215
K+D G+Y + NE S A+ + +
Sbjct: 74 KQDGGLYTLSLGNEFGSDSATVNIHI 99
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
VEP + G TC+ P I WMKDG P+P PV + + +D+G Y C
Sbjct: 8 VEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSC 67
Query: 199 VIRNEQESAQAS 210
V + Q S
Sbjct: 68 VATHSSHGPQES 79
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 217 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 259
G PPVI++ ++T+ + C+A+G+P P I W DG
Sbjct: 4 GSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDG 46
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 8/102 (7%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE-------PVFRIDSVRKEDK 193
P QT+ +C G+PV TI W KDG V + V +I + D
Sbjct: 15 PVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDT 74
Query: 194 GMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNP 235
G Y C+ A S +++ F PV +D L P
Sbjct: 75 GRYTCIASTPSGEATWSAYIEV-QEFGVPVQPPRPTDPNLIP 115
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 60 NDRVKQV-SGTLIIKEAKVEDSGKYLCVVNNSVG 92
+ R+KQ+ +G L I+ AK+ D+G+Y C+ + G
Sbjct: 53 DSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSG 86
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 65/183 (35%), Gaps = 48/183 (26%)
Query: 52 SRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVE 111
+ K+ DRV + + K ED+G Y C+V+ G E V L V
Sbjct: 52 NNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGE----VKVKLIVLVP 107
Query: 112 PTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC-KYEGNPVKTISWMK 170
P+ T++ P+ TI G A TC + +G+P +W K
Sbjct: 108 PSKPTVNI---------------------PSSATI--GNRAVLTCSEQDGSPPSEYTWFK 144
Query: 171 DGKPVPDH------------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 212
DG +P + E VF D + D G Y C RN + S
Sbjct: 145 DGIVMPTNPKSTRAFSNSSYVLNPTTGELVF--DPLSASDTGEYSCEARNGYGTPMTSNA 202
Query: 213 LKL 215
+++
Sbjct: 203 VRM 205
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
PP I+ SD +++ G C +G PTPE++W G+K+ + E+
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQ 51
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDS-----------VR 189
P+ +ID G+ C + G P ++W G+ + + F I++ V+
Sbjct: 12 PSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQ 71
Query: 190 KEDKGMYQCVIRNEQESAQASGELKL 215
K+D G+Y + NE S A+ + +
Sbjct: 72 KQDGGLYTLSLGNEFGSDSATVNIHI 97
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 68 GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
GTL V+D+G Y C+V+NSVG + L VT
Sbjct: 397 GTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT 432
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI----------DSVRKEDKGMYQC 198
G A+ C+ + ++SW+ V H RI +V +D GMY C
Sbjct: 356 GMAAELKCR-ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTC 414
Query: 199 VIRNEQESAQASGELKLGG 217
++ N + AS L + G
Sbjct: 415 MVSNSVGNTTASATLNVTG 433
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 219 FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ P I E +T+ G + +F+ G P PE WY +G K+ ++R
Sbjct: 3 MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDR 51
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVP-------DHNEP---VFRIDSVRKEDKGMYQC 198
G A+F CK EG P + W KD PV D++E I V +D Y C
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 115
Query: 199 VIRNEQESAQASGEL 213
N A + EL
Sbjct: 116 KAVNSLGEATCTAEL 130
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 15/128 (11%)
Query: 146 IDFGRPAQFTCKYEGNPVKTISWMK-DGKPVPDHNEPVFRIDSVRK---------EDKGM 195
+ G FTC G P ++I W G+ + V + + VR ED G+
Sbjct: 14 LSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGI 72
Query: 196 YQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS 254
Y+C + + ++ +A+ L++ + +E S + G + C S +P P +S
Sbjct: 73 YRCQATDAKGQTQEATVVLEI---YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVS 129
Query: 255 WYLDGKKL 262
W +++
Sbjct: 130 WLYHNEEV 137
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 49/148 (33%), Gaps = 50/148 (33%)
Query: 66 VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQF 125
V L I A +ED+G Y C ++ G TV V Q + F
Sbjct: 56 VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV----------VLEIYQKLTF------ 99
Query: 126 TCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI 185
E+ P Q G A+ C+ +P +SW+ HNE V I
Sbjct: 100 ---REVVSP---------QEFKQGEDAEVVCRVSSSPAPAVSWLY-------HNEEVTTI 140
Query: 186 DSVR---------------KEDKGMYQC 198
R K D+G+Y+C
Sbjct: 141 SDNRFAMLANNNLQILNINKSDEGIYRC 168
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 227 SFSDETLNPGPNYYFKCIASGNPTPEISWYL-DGKKLVNAER 267
S S L+ G + +F C A G P I WY G+K+++ +R
Sbjct: 8 SLSKVELSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQR 48
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVP-------DHNEP---VFRIDSVRKEDKGMYQC 198
G A+F CK EG P + W KD PV D++E I V +D Y C
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 115
Query: 199 VIRNEQESAQASGEL 213
N A + EL
Sbjct: 116 KAVNSLGEATCTAEL 130
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 183 FRIDSVRKEDKGMYQCVI-RNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
RI S++ D G YQC++ Q G + L G P E D T+ +
Sbjct: 70 LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGL---PYFLEEPEDRTVAANTPFNL 126
Query: 242 KCIASGNPTP-EISWYLDGKKLVNA 265
C A G P P ++ W D L A
Sbjct: 127 SCQAQGPPEPVDLLWLQDAVPLATA 151
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 44 WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNS 90
W+K + S V+ R+ Q L AKVEDSG Y CVV NS
Sbjct: 42 WYK--DDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNS 86
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 13/64 (20%)
Query: 165 TISWMKDGKPVPDHNEPVFRIDSVRK---------EDKGMYQCVIRNEQESAQASGELKL 215
TI+W KD P E RI ++ ED G Y CV+RN + +K+
Sbjct: 39 TITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR----IKI 94
Query: 216 GGRF 219
+F
Sbjct: 95 SAKF 98
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNEPV---------FRIDSVRKEDK 193
Q++ G+ + + +G P +SW+++ +PV PD RI + + D
Sbjct: 15 QSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDA 74
Query: 194 GMYQCVIRNEQESAQASGELKLGG 217
G Y C NE + Q L++ G
Sbjct: 75 GFYTCKAVNEYGARQCEARLEVRG 98
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 255
PP K S D+++ G + G P P +SW
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSW 39
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human
Il-1beta And Il-1ra, Bound To Human Interleukin-1
Receptor Type 1
Length = 319
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 44 WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNS 90
W+K + S V+ R+ Q L AKVEDSG Y CVV NS
Sbjct: 40 WYK--DDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNS 84
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 13/64 (20%)
Query: 165 TISWMKDGKPVPDHNEPVFRIDSVRK---------EDKGMYQCVIRNEQESAQASGELKL 215
TI+W KD P E RI ++ ED G Y CV+RN + +K+
Sbjct: 37 TITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR----IKI 92
Query: 216 GGRF 219
+F
Sbjct: 93 SAKF 96
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 44 WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNS 90
W+K + S V+ R+ Q L AKVEDSG Y CVV NS
Sbjct: 37 WYK--DDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNS 81
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 13/64 (20%)
Query: 165 TISWMKDGKPVPDHNEPVFRIDSVRK---------EDKGMYQCVIRNEQESAQASGELKL 215
TI+W KD P E RI ++ ED G Y CV+RN + +K+
Sbjct: 34 TITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR----IKI 89
Query: 216 GGRF 219
+F
Sbjct: 90 SAKF 93
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With
Interleukin-1 Beta
Length = 315
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 44 WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNS 90
W+K + S V+ R+ Q L AKVEDSG Y CVV NS
Sbjct: 40 WYK--DDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNS 84
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 13/64 (20%)
Query: 165 TISWMKDGKPVPDHNEPVFRIDSVRK---------EDKGMYQCVIRNEQESAQASGELKL 215
TI+W KD P E RI ++ ED G Y CV+RN + +K+
Sbjct: 37 TITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR----IKI 92
Query: 216 GGRF 219
+F
Sbjct: 93 SAKF 96
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 68 GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104
GTL ++ A+V+D+G YLC+ N+ G +S+ L V +
Sbjct: 441 GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 75/211 (35%), Gaps = 67/211 (31%)
Query: 48 IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN--------------NSVGG 93
IEGS + L + ++ V G L + E YL V+N +SVG
Sbjct: 263 IEGSMLHELLRLQE-IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG- 320
Query: 94 ESVETVLTVTAPLAAGV-----------------EPTVQTIDFGR------------PAQ 124
++ET++ + PLA +PT T +F + P
Sbjct: 321 -NLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNY 379
Query: 125 FTCKY-EISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-------- 175
FTC+ I A V +D G QF C+ +G+P I W+ K +
Sbjct: 380 FTCRRARIRDRKAQQV-----FVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGR 434
Query: 176 ----PDHNEPVFRIDSVRKEDKGMYQCVIRN 202
PD + + +D G Y C+ N
Sbjct: 435 LTVFPD---GTLEVRYAQVQDNGTYLCIAAN 462
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 225 KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 266
++ F DE G F C A G+P P I W K LV+A+
Sbjct: 393 QQVFVDE----GHTVQFVCRADGDPPPAILWLSPRKHLVSAK 430
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 8/129 (6%)
Query: 135 LAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE----PVFRIDSVRK 190
+G+E V+ G + KY G P I W K+G P+ ++ V I V +
Sbjct: 202 FGSGMESLVEA-TVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSE 260
Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSD--ETLNPGPNYYFKCIASGN 248
D G Y ++ N + S + L P + ++S ++ G C
Sbjct: 261 RDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAI 320
Query: 249 PTP-EISWY 256
P P I WY
Sbjct: 321 PPPHHIHWY 329
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 183 FRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIK-----ESFSDETLNPGP 237
ID V + D+G+Y C + + + S +++ + P + ES + T+ G
Sbjct: 162 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV---HEKPFVAFGSGMESLVEATV--GE 216
Query: 238 NYYFKCIASGNPTPEISWYLDG 259
G P PEI WY +G
Sbjct: 217 RVRIPAKYLGYPPPEIKWYKNG 238
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 70/182 (38%), Gaps = 45/182 (24%)
Query: 51 SSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGV 110
S+R P D + Q + +L ++ +V D G Y C V+ +S L V AP
Sbjct: 57 SNRTALFP--DLLVQGNASLRLQRVRVTDEGSYTCFVSIQ-DFDSAAVSLQVAAP----- 108
Query: 111 EPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK-YEGNPVKTISWM 169
+ +P+ +EP + + G TC Y+G P + W
Sbjct: 109 --------YSKPSM-------------TLEPN-KDLRPGNMVTITCSSYQGYPEAEVFW- 145
Query: 170 KDGKPVP----------DHNEPVFRIDSVRK---EDKGMYQCVIRNEQESAQASGELKLG 216
KDG+ VP + +F + SV + G Y C++RN A G + +
Sbjct: 146 KDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTIT 205
Query: 217 GR 218
G+
Sbjct: 206 GQ 207
>pdb|3S58|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S58|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
Length = 223
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 185 IDSVRKEDKGMYQC--VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFK 242
+ +V +D+G+++C + RN +E+ +++ +++ P I +S S+ T PN
Sbjct: 68 LPAVGIQDEGIFRCQAMNRNGKET-KSNYRVRVYQIPGKPEIVDSASELTAG-VPNKVGT 125
Query: 243 CIASGN-PTPEISWYLDGKKLVNAER 267
C++ G+ P +SW+LDGK LV E+
Sbjct: 126 CVSEGSYPAGTLSWHLDGKPLVPNEK 151
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 30/140 (21%)
Query: 61 DRVKQV--SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
D V +V +G+L + ++D G + C N G E+ +
Sbjct: 55 DSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIP----------- 103
Query: 119 FGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-PVKTISWMKDGKP-VP 176
G+P E L AGV V TC EG+ P T+SW DGKP VP
Sbjct: 104 -GKPEIVDSASE----LTAGVPNKVG----------TCVSEGSYPAGTLSWHLDGKPLVP 148
Query: 177 DHNEPVFRIDSVRKEDKGMY 196
+ + + R + G++
Sbjct: 149 NEKGVSVKEQTRRHPETGLF 168
>pdb|3CJJ|A Chain A, Crystal Structure Of Human Rage Ligand-Binding Domain
Length = 219
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 185 IDSVRKEDKGMYQC--VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFK 242
+ +V +D+G+++C + RN +E+ +++ +++ P I +S S+ T PN
Sbjct: 65 LPAVGIQDEGIFRCQAMNRNGKET-KSNYRVRVYQIPGKPEIVDSASELTAG-VPNKVGT 122
Query: 243 CIASGN-PTPEISWYLDGKKLVNAER 267
C++ G+ P +SW+LDGK LV E+
Sbjct: 123 CVSEGSYPAGTLSWHLDGKPLVPNEK 148
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 30/140 (21%)
Query: 61 DRVKQV--SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
D V +V +G+L + ++D G + C N G E+ +
Sbjct: 52 DSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIP----------- 100
Query: 119 FGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-PVKTISWMKDGKP-VP 176
G+P E L AGV V TC EG+ P T+SW DGKP VP
Sbjct: 101 -GKPEIVDSASE----LTAGVPNKVG----------TCVSEGSYPAGTLSWHLDGKPLVP 145
Query: 177 DHNEPVFRIDSVRKEDKGMY 196
+ + + R + G++
Sbjct: 146 NEKGVSVKEQTRRHPETGLF 165
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRID----------SVRK 190
PT + G A+ C+ G + +++W+ + H RI +V
Sbjct: 319 PTDLNVTEGMAAELKCR-TGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLNFTNVTV 377
Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGR 218
+D G Y C++ N + AS L +G +
Sbjct: 378 QDTGQYTCMVTNSAGNTTASATLNVGTK 405
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 47 FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102
GS R L+D GTL V+D+G+Y C+V NS G + L V
Sbjct: 353 MTHGSYRVRISVLHD------GTLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPV------FRIDSVRKEDKGMYQCVIRN 202
G+ C G PV I+W+ +G+P+ I ED G Y C+ N
Sbjct: 26 GQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAEN 85
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
P D + G ++ +C G P P I+W L+G+ +
Sbjct: 12 PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI 52
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 70 LIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102
L I++A ED G Y C+ N++G S +TV
Sbjct: 66 LHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD---HNEPV-------FRIDSVRK 190
P +ID GR + K G P +SW +G+ V H V + VR
Sbjct: 12 PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRA 71
Query: 191 EDKGMYQCVIRNEQESAQASGELKL 215
D G Y CV +N A + +L +
Sbjct: 72 SDAGAYACVAKNRAGEATFTVQLDV 96
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 217 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
G PP + + +++ G SG P P++SWYL+G+ +
Sbjct: 1 GAMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTV 46
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRK 190
P I GR A+ C+ P+ ++ W+ V H N+ V
Sbjct: 14 PRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLL 71
Query: 191 EDKGMYQCVIRNEQESAQASGELKL 215
D G+Y C++ N ++ AS L +
Sbjct: 72 SDTGVYTCMVTNVAGNSNASAYLNV 96
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 68 GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAG 109
GTL + D+G Y C+V N G + L V++ ++G
Sbjct: 62 GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSSGPSSG 103
>pdb|3QIB|C Chain C, Crystal Structure Of The 2b4 Tcr In Complex With MccI-Ek
pdb|3QJF|A Chain A, Crystal Structure Of The 2b4 Tcr
pdb|3QJF|C Chain C, Crystal Structure Of The 2b4 Tcr
Length = 207
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 64 KQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
K+ TL I++A++EDSG Y C + GG + LT V P +Q D
Sbjct: 68 KESYSTLHIRDAQLEDSGTYFCAALRATGGNN---KLTFGQGTVLSVIPDIQNPD 119
>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation
Endproducts (Rage)
Length = 581
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 185 IDSVRKEDKGMYQC--VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFK 242
+ +V +D+G+++C + RN +E+ +++ +++ P I +S S+ T PN
Sbjct: 436 LPAVGIQDEGIFRCQAMNRNGKET-KSNYRVRVYQIPGKPEIVDSASELTAGV-PNKVGT 493
Query: 243 CIASGN-PTPEISWYLDGKKLVNAER 267
C++ G+ P +SW+LDGK LV E+
Sbjct: 494 CVSEGSYPAGTLSWHLDGKPLVPNEK 519
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 36/143 (25%)
Query: 61 DRVKQV--SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
D V +V +G+L + ++D G + C N G E+
Sbjct: 423 DSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRV----------------- 465
Query: 119 FGRPAQFTCKYEI---SPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-PVKTISWMKDGKP 174
R Q K EI + L AGV V T C EG+ P T+SW DGKP
Sbjct: 466 --RVYQIPGKPEIVDSASELTAGVPNKVGT----------CVSEGSYPAGTLSWHLDGKP 513
Query: 175 -VPDHNEPVFRIDSVRKEDKGMY 196
VP+ + + R + G++
Sbjct: 514 LVPNEKGVSVKEQTRRHPETGLF 536
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 183 FRIDSVRKEDKGMYQCVIR-NEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
+RI+ R ED G Y CV A A+ E+K P I E N G +
Sbjct: 58 YRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAA-----PDITGHKRSENKNEGQDAMM 112
Query: 242 KCIASGNPTPEISW 255
C + G P PE W
Sbjct: 113 YCKSVGYPHPEWMW 126
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 40 QENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETV 99
+EN F+ I SS + + + +++ I+ ED G+Y C NS+G SV TV
Sbjct: 129 KENGVFEEISNSSGRFFIINKENYTELN---IVNLQITEDPGEYECNATNSIGSASVSTV 185
Query: 100 LTV 102
L V
Sbjct: 186 LRV 188
>pdb|3FFC|E Chain E, Crystal Structure Of Cf34 Tcr In Complex With Hla-B8FLR
pdb|3FFC|J Chain J, Crystal Structure Of Cf34 Tcr In Complex With Hla-B8FLR
Length = 247
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 24/121 (19%)
Query: 61 DRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFG 120
+R+K V TL I+ AK+EDS YLC + T T+ A T FG
Sbjct: 67 ERLKGVDSTLKIQPAKLEDSAVYLCA-----------SSFTWTSGGA------TDTQYFG 109
Query: 121 RPAQFTCKYEIS---PPLAAGVEPTVQTIDFGRPAQFTCKYEG---NPVKTISWMKDGKP 174
+ T ++ PP A EP+ I + A C G + V+ +SW +GK
Sbjct: 110 PGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE-LSWWVNGKE 168
Query: 175 V 175
V
Sbjct: 169 V 169
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 14/126 (11%)
Query: 152 AQFTCKYEGNPVKTISWMKDGKPV----PDHNEPVFR-------IDSVRKEDKGMYQCVI 200
A CK G+P + W + GK + + F+ I SV +D +YQ
Sbjct: 22 ATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA 81
Query: 201 RNE--QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 258
N+ S AS E+++ + P E G K SG P P I+W
Sbjct: 82 TNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQ-K 140
Query: 259 GKKLVN 264
G+ L++
Sbjct: 141 GQDLID 146
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 263
P KE + + N C +G+P P + WY GK+++
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII 46
>pdb|2FCB|A Chain A, Human Fc Gamma Receptor Iib Ectodomain (Cd32)
Length = 173
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 154 FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
TC+ +P +I W +G +P H +P +R + D G Y C
Sbjct: 24 LTCRGTHSPESDSIQWFHNGNLIPTHTQPSYRFKA-NNNDSGEYTC 68
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 14/132 (10%)
Query: 146 IDFGRPAQFTCKYEGNPVKTISWMKDGKPV----PDHNEPVFR-------IDSVRKEDKG 194
+ + A CK G+P + W + GK + + F+ I SV +D
Sbjct: 14 VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDAT 73
Query: 195 MYQCVIRNE--QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE 252
+YQ N+ S AS E+++ + P E G K SG P P
Sbjct: 74 VYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPV 133
Query: 253 ISWYLDGKKLVN 264
I+W G+ L++
Sbjct: 134 ITWQ-KGQDLID 144
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 263
P KE + + N C +G+P P + WY GK+++
Sbjct: 3 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII 44
>pdb|2BNU|A Chain A, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
Length = 203
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 22/110 (20%)
Query: 28 PGGESFALLCEAQEN-----MWFK-----------FIEGSSR-KVAVPLNDRVKQVSG-- 68
P GE+ L C ++ WF+ I+ S R + + LN + + SG
Sbjct: 13 PEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRS 72
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
TL I ++ DS YLC V + GG + T T+ + V P +Q D
Sbjct: 73 TLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLI---VHPYIQNPD 119
>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of
Coxsackie & Adenovirus Receptor From Mouse (Mcar)
Length = 214
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 30 GESFALLCEAQEN---MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV 86
G F L CE +E + F++ + S + +P + S + +K A E SG Y C
Sbjct: 136 GNDFKLKCEPKEGSLPLQFEWQKLSDSQ-TMPTPWLAEMTSPVISVKNASSEYSGTYSCT 194
Query: 87 VNNSVGGESVETVLTVTAP 105
V N VG + L V P
Sbjct: 195 VQNRVGSDQCMLRLDVVPP 213
>pdb|2BNQ|D Chain D, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
pdb|2BNR|D Chain D, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
Length = 203
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 22/110 (20%)
Query: 28 PGGESFALLCEAQEN-----MWFK-----------FIEGSSR-KVAVPLNDRVKQVSG-- 68
P GE+ L C ++ WF+ I+ S R + + LN + + SG
Sbjct: 13 PEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRS 72
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
TL I ++ DS YLC V + GG + T T+ + V P +Q D
Sbjct: 73 TLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLI---VHPYIQNPD 119
>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
Length = 225
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 30 GESFALLCEAQEN---MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV 86
G F L CE +E + F++ + S + +P + S + +K A E SG Y C
Sbjct: 138 GNDFKLKCEPKEGSLPLQFEWQKLSDSQ-TMPTPWLAEMTSPVISVKNASSEYSGTYSCT 196
Query: 87 VNNSVGGESVETVLTVTAP 105
V N VG + L V P
Sbjct: 197 VQNRVGSDQCMLRLDVVPP 215
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 13/71 (18%)
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSV-----------RKEDKGMYQ 197
G TC+ P TISW +DG+ +P N +I + + D G Y
Sbjct: 33 GNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYN 92
Query: 198 CVIRNE--QES 206
C N QES
Sbjct: 93 CTAVNRIGQES 103
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 136 AAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN------EPVFRIDSVR 189
++GVE + G Q C+ + V++I+W++DG + + N E V DSV
Sbjct: 5 SSGVEVESFLVHPGDLLQLRCRLR-DDVQSINWLRDGVQLAESNRTRITGEEVEVQDSV- 62
Query: 190 KEDKGMYQCV 199
D G+Y CV
Sbjct: 63 PADSGLYACV 72
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 14/132 (10%)
Query: 146 IDFGRPAQFTCKYEGNPVKTISWMKDGKPV----PDHNEPVFR-------IDSVRKEDKG 194
+ + A CK G+P + W + GK + + F+ I SV +D
Sbjct: 16 VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDAT 75
Query: 195 MYQCVIRNE--QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE 252
+YQ N+ S AS E+++ + P E G K SG P P
Sbjct: 76 VYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPV 135
Query: 253 ISWYLDGKKLVN 264
I+W G+ L++
Sbjct: 136 ITWQ-KGQDLID 146
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 263
P KE + + N C +G+P P + WY GK+++
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII 46
>pdb|2NPL|X Chain X, Nmr Structure Of Card D2 Domain
Length = 96
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 30 GESFALLCEAQENM------WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
G F + CE +E W K S +P + + S + +K A E SG Y
Sbjct: 16 GSDFKIKCEPKEGSLPLQYEWQKL----SDSQKMPTSWLAEMTSSVISVKNASSEYSGTY 71
Query: 84 LCVVNNSVGGESVETVLTVTAP 105
C V N VG + L V P
Sbjct: 72 SCTVRNRVGSDQCLLRLNVVPP 93
>pdb|2NCM|A Chain A, Neural Cell Adhesion Molecule, Nmr, 20 Structures
Length = 99
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 30 GESFALLCEA------QENMWF----KFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
GES LC+ ++ WF + + + ++++V ND S TL I A ++D
Sbjct: 17 GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND---DDSSTLTIYNANIDD 73
Query: 80 SGKYLCVVNNSVGGESVETV 99
+G Y CVV G +S TV
Sbjct: 74 AGIYKCVVTAEDGTQSEATV 93
>pdb|4DKD|C Chain C, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
Length = 292
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 20 SDIIRFKKPGGESFALLCEAQE-NMWFK-FIEGSSRKVAVP-----LNDRVKQVSGTLII 72
++++R + GE+ ++C A ++ F F++ ++ K+A+P N+R ++V TL +
Sbjct: 194 AELVRIR---GEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVL-TLNL 249
Query: 73 KEAKVEDSGKYLCVVNNSVGGESVETVLTV 102
+ + +G Y CV +N G S V
Sbjct: 250 DQVDFQHAGNYSCVASNVQGKHSTSMFFRV 279
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 222 PVIKESFSDETLNPGPNYYFKCIASGN------PTPEISWYLDGKKLV 263
PVI+ S + + PG +C+ +G+ P+P + Y DG +
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNGSVEWDGPPSPHWTLYSDGSSSI 52
>pdb|3MJG|X Chain X, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
pdb|3MJG|Y Chain Y, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
Length = 289
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 30 GESFALLC----EAQENMWFKFIEGSSRKVAVPLNDRV----KQVSGTLIIKEAKVEDSG 81
GE+ L+C N + + S ++ P+ D + + L I A++EDSG
Sbjct: 196 GENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSG 255
Query: 82 KYLCVVNNSVGGESVETVLTVTA 104
Y C V SV E + +T
Sbjct: 256 TYTCNVTESVNDHQDEKAINITV 278
>pdb|1DR9|A Chain A, Crystal Structure Of A Soluble Form Of B7-1 (Cd80)
Length = 201
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 185 IDSVRKEDKGMYQCVIRNEQESA---QASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
I ++R D+G Y+CV+ ++ A + E+ L + D P S SD +
Sbjct: 69 ILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPT--PSISDFEIPTSNIRRI 126
Query: 242 KCIASGN-PTPEISWYLDGKKL 262
C SG P P +SW +G++L
Sbjct: 127 ICSTSGGFPEPHLSWLENGEEL 148
>pdb|1I8L|A Chain A, Human B7-1CTLA-4 Co-Stimulatory Complex
pdb|1I8L|B Chain B, Human B7-1CTLA-4 Co-Stimulatory Complex
Length = 208
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 185 IDSVRKEDKGMYQCVIRNEQESA---QASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
I ++R D+G Y+CV+ ++ A + E+ L + D P S SD +
Sbjct: 69 ILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPT--PSISDFEIPTSNIRRI 126
Query: 242 KCIASGN-PTPEISWYLDGKKL 262
C SG P P +SW +G++L
Sbjct: 127 ICSTSGGFPEPHLSWLENGEEL 148
>pdb|1FCG|A Chain A, Ectodomain Of Human Fc Gamma Receptor, Fcgriia
Length = 174
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 154 FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
TC+ +P +I W +G +P H +P +R + D G Y C
Sbjct: 27 LTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKA-NNNDSGEYTC 71
>pdb|3MBE|C Chain C, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
pdb|3MBE|G Chain G, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
Length = 229
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 45 FKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104
F +G+ + K+ TL IK+A++EDSG Y C + GG + +
Sbjct: 47 FYLAQGTKENGRLKSTFNSKERYSTLHIKDAQLEDSGTYFCAAED--GGSGNKLIFGTGT 104
Query: 105 PLAAGVEPTVQ 115
L+ V+P +Q
Sbjct: 105 LLS--VKPNIQ 113
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRK 190
P I GR A+ C+ P+ ++ W+ V H N+ V
Sbjct: 359 PRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLL 416
Query: 191 EDKGMYQCVIRNEQESAQASGELKL 215
D G+Y C++ N ++ AS L +
Sbjct: 417 SDTGVYTCMVTNVAGNSNASAYLNV 441
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 68 GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104
GTL + D+G Y C+V N G + L V+
Sbjct: 407 GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST 443
>pdb|3RY6|C Chain C, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
Length = 167
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 154 FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
TC+ +P +I W +G +P H +P +R + D G Y C
Sbjct: 21 LTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKA-NNNDSGEYTC 65
>pdb|1YPZ|E Chain E, Immune Receptor
pdb|1YPZ|G Chain G, Immune Receptor
Length = 207
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 14/66 (21%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCK 128
TL I++A++EDSG Y C + T ++ G E + FG+ Q T +
Sbjct: 72 TLHIRDAQLEDSGTYFCAAD--------------TWHISEGYELGTDKLVFGQGTQVTVE 117
Query: 129 YEISPP 134
+ PP
Sbjct: 118 PKSQPP 123
>pdb|2PTT|A Chain A, Structure Of Nk Cell Receptor 2b4 (Cd244) Bound To Its
Ligand Cd48
pdb|2PTV|A Chain A, Structure Of Nk Cell Receptor Ligand Cd48
Length = 110
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 153 QFTCKYEGNPVKTI--SWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS 210
Q +Y N KTI S K G+ + N I +VRKEDKG Y + E E+
Sbjct: 44 QKILEYNYNSTKTIFESEFK-GRVYLEENNGALHISNVRKEDKGTYYMRVLRETEN---- 98
Query: 211 GELKLGGR-FDP 221
ELK+ FDP
Sbjct: 99 -ELKITLEVFDP 109
>pdb|3D5O|F Chain F, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
Length = 177
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 154 FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
TC+ +P +I W +G +P H +P +R + D G Y C
Sbjct: 24 LTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKA-NNNDSGEYTC 68
>pdb|1H9V|A Chain A, Human Fc-Gamma-Receptor Iia (Fcgriia), Monoclinic
Length = 172
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 154 FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
TC+ +P +I W +G +P H +P +R + D G Y C
Sbjct: 24 LTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKA-NNNDSGEYTC 68
>pdb|3RY4|A Chain A, 1.5 Angstrom Resolution Structure Of Glycosylated
Fcgammariia (Low- Responder Polymorphism)
Length = 170
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 154 FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
TC+ +P +I W +G +P H +P +R + D G Y C
Sbjct: 24 LTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKA-NNNDSGEYTC 68
>pdb|3RY5|A Chain A, Three-Dimensional Structure Of Glycosylated Fcgammariia
(High- Responder Polymorphism)
Length = 170
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 154 FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
TC+ +P +I W +G +P H +P +R + D G Y C
Sbjct: 24 LTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKA-NNNDSGEYTC 68
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 67 SGTLIIKEAKV--EDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQ 124
+GT ++ A++ +DSG+Y C + + G S + L V+ + V T+D GR
Sbjct: 72 NGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVT 131
Query: 125 FTCKYE 130
C ++
Sbjct: 132 INCPFK 137
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 56/164 (34%), Gaps = 39/164 (23%)
Query: 65 QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQ 124
Q+ +++I + ++ D+G+YLC + L V P EP + D
Sbjct: 182 QLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKP-----EPELVYEDLRGSVT 236
Query: 125 FTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR 184
F C + P V + A+F C+ + GK P +
Sbjct: 237 FHC----------ALGPEVANV-----AKFLCRQSSGENCDVVVNTLGKRAPAFEGRILL 281
Query: 185 ------------IDSVRKEDKGMYQCVIRNEQESAQASGELKLG 216
I +RKED G Y C A + G+L+ G
Sbjct: 282 NPQDKDGSFSVVITGLRKEDAGRYLC-------GAHSDGQLQEG 318
>pdb|2F54|D Chain D, Directed Evolution Of Human T Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Increasing Apparent
Cross-Reactivity
pdb|2F54|K Chain K, Directed Evolution Of Human T Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Increasing Apparent
Cross-Reactivity
Length = 206
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 22/110 (20%)
Query: 28 PGGESFALLCEAQEN-----MWFK-----------FIEGSSR-KVAVPLNDRVKQVSG-- 68
P GE+ L C ++ WF+ I+ S R + + LN + + +G
Sbjct: 14 PEGENLVLNCSFTDSAIYNLQWFRQDPGGKLTSLLLIQSSQREQTSGRLNASLDKSAGSS 73
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
TL I ++ DS YLC V + GG + T T+ + V P +Q D
Sbjct: 74 TLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLI---VHPYIQNPD 120
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 93 GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISP---PLAAGVE--PTVQTID 147
G + V A + VE VQ +DF TCK I+P LAA E + +D
Sbjct: 1 GSHMAIVKVTDADFDSKVESGVQLVDFWATWCGTCKM-IAPVLEELAADYEGKADILKLD 59
Query: 148 FGRPAQFTCKYEGNPVKTISWMKDGKPV 175
KYE + T+ KDG+PV
Sbjct: 60 VDENPSTAAKYEVMSIPTLIVFKDGQPV 87
>pdb|2Z8W|C Chain C, Structure Of An Ignar-Ama1 Complex
pdb|2Z8W|D Chain D, Structure Of An Ignar-Ama1 Complex
Length = 116
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 27 KPGGESFALLC-------EAQENMWFKFIEGSSRKVAVPLNDRVKQV------SGTLIIK 73
K GES + C E ++ W++ GS+ + ++ + R + S +L I
Sbjct: 12 KETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRIS 71
Query: 74 EAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQ 115
+ +VEDSG Y C S+ L AG TV+
Sbjct: 72 DLRVEDSGTYKCQAFYSLLLRDYNYSLLFRGEKGAGTALTVK 113
>pdb|1H5B|A Chain A, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVG 92
TL I++A++EDSG Y C S G
Sbjct: 72 TLHIRDAQLEDSGTYFCAAEASSG 95
>pdb|1VES|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|1VES|B Chain B, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 113
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 27 KPGGESFALLC-------EAQENMWFKFIEGSSRKVAVPLNDRVKQV------SGTLIIK 73
K GES + C E ++ W++ GS+ + ++ + R + S +L I
Sbjct: 12 KETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRIS 71
Query: 74 EAKVEDSGKYLC 85
+ +VEDSG Y C
Sbjct: 72 DLRVEDSGTYKC 83
>pdb|3FN3|A Chain A, Dimeric Structure Of Pd-L1
pdb|3FN3|B Chain B, Dimeric Structure Of Pd-L1
Length = 221
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 15/161 (9%)
Query: 99 VLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKY 158
+ TVT P + +++G CK+ + L ++ QF
Sbjct: 1 MFTVTVP------KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGE 54
Query: 159 EGNPVKTISWMKDGKPVPDH---NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
E V+ S+ + + + D +I V+ +D G+Y+C+I S + ++
Sbjct: 55 EDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMI-----SYGGADYKRI 109
Query: 216 GGRFDPPVIKESFSDETLNP-GPNYYFKCIASGNPTPEISW 255
+ + P K + ++P + C A G P E+ W
Sbjct: 110 TVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIW 150
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 45 FKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETV-LTVT 103
K S R+ A L D++ + L I + K++D+G Y C++ S GG + + + V
Sbjct: 57 LKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMI--SYGGADYKRITVKVN 114
Query: 104 AP 105
AP
Sbjct: 115 AP 116
>pdb|2Z8V|C Chain C, Structure Of An Ignar-Ama1 Complex
pdb|2Z8V|D Chain D, Structure Of An Ignar-Ama1 Complex
Length = 116
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 27 KPGGESFALLC-------EAQENMWFKFIEGSSRKVAVPLNDRVKQV------SGTLIIK 73
K GES + C E ++ W++ GS+ + ++ + R + S +L I
Sbjct: 12 KETGESLTINCVLRDASLELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRIS 71
Query: 74 EAKVEDSGKYLC 85
+ +VEDSG Y C
Sbjct: 72 DLRVEDSGTYKC 83
>pdb|1H5B|B Chain B, T Cell Receptor Valpha11 (Av11s5) Domain
pdb|1H5B|D Chain D, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGG 93
TL I++A++EDSG Y C S G
Sbjct: 72 TLHIRDAQLEDSGTYFCAAEASSGA 96
>pdb|1H5B|C Chain C, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVG 92
TL I++A++EDSG Y C S G
Sbjct: 72 TLHIRDAQLEDSGTYFCAAEASSG 95
>pdb|2YWY|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|B Chain B, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|C Chain C, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|D Chain D, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 113
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 27 KPGGESFALLC-------EAQENMWFKFIEGSSRKVAVPLNDRVKQV------SGTLIIK 73
K GES + C + + W++ GS+ + + + R + S +L I+
Sbjct: 12 KETGESLTINCALKNAADDLERTDWYRTTLGSTNEQKISIGGRYVETVNKGSKSFSLRIR 71
Query: 74 EAKVEDSGKYLC 85
+ +VEDSG Y C
Sbjct: 72 DLRVEDSGTYKC 83
>pdb|1SY6|A Chain A, Crystal Structure Of Cd3gammaepsilon Heterodimer In
Complex With Okt3 Fab Fragment
Length = 204
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 154 FTCKYEGNPVKTISWMKDGKPVP--DHNEPVFRIDSVRKEDKGMYQC 198
TC E K I+W KDGK + ++ + + S K+ +GMYQC
Sbjct: 23 LTCDAE---AKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQC 66
>pdb|2YWZ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 111
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 27 KPGGESFALLCEAQEN-------MWFKFIEGSSRKVAVPLNDRVKQV------SGTLIIK 73
K GES + C +++ W++ GS+ + + + R + S +L I
Sbjct: 12 KETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSKSFSLRIS 71
Query: 74 EAKVEDSGKYLCVVNNS 90
+ +VEDSG Y C + S
Sbjct: 72 DLRVEDSGTYKCQADYS 88
>pdb|1I85|A Chain A, Crystal Structure Of The Ctla-4B7-2 Complex
pdb|1I85|B Chain B, Crystal Structure Of The Ctla-4B7-2 Complex
pdb|1NCN|A Chain A, The Receptor-Binding Domain Of Human B7-2
pdb|1NCN|B Chain B, The Receptor-Binding Domain Of Human B7-2
Length = 110
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 172 GKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 204
G+ D + R+ +++ +DKG+YQC+I +++
Sbjct: 60 GRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKK 92
>pdb|3SBW|C Chain C, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 222
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 15/161 (9%)
Query: 99 VLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKY 158
+ TVT P + +++G CK+ + L ++ QF
Sbjct: 1 MFTVTVP------KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGE 54
Query: 159 EGNPVKTISWMKDGKPVPDH---NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
E V+ S+ + + + D +I V+ +D G+Y+C+I S + ++
Sbjct: 55 EDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMI-----SYGGADYKRI 109
Query: 216 GGRFDPPVIKESFSDETLNP-GPNYYFKCIASGNPTPEISW 255
+ + P K + ++P + C A G P E+ W
Sbjct: 110 TVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIW 150
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 45 FKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETV-LTVT 103
K S R+ A L D++ + L I + K++D+G Y C++ S GG + + + V
Sbjct: 57 LKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMI--SYGGADYKRITVKVN 114
Query: 104 AP 105
AP
Sbjct: 115 AP 116
>pdb|3MOQ|A Chain A, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|B Chain B, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|C Chain C, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|D Chain D, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
Length = 126
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 27 KPGGESFALLC-------EAQENMWFKFIEGSSRKVAVPLNDRVKQV------SGTLIIK 73
K GES + C E ++ W++ GS+ + ++ + R + S +L I
Sbjct: 12 KETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRIS 71
Query: 74 EAKVEDSGKYLC 85
+ +VEDSG Y C
Sbjct: 72 DLRVEDSGTYKC 83
>pdb|3QIU|C Chain C, Crystal Structure Of The 226 Tcr In Complex With MccI-Ek
pdb|3QIW|C Chain C, Crystal Structure Of The 226 Tcr In Complex With
Mcc-P5eI-Ek
Length = 205
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 64 KQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV 96
K+ TL I++A++EDSG Y C S G + V
Sbjct: 68 KERYSTLHIRDAQLEDSGTYFCAAEPSSGQKLV 100
>pdb|3BIK|A Chain A, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIS|A Chain A, Crystal Structure Of The Pd-L1
pdb|3BIS|B Chain B, Crystal Structure Of The Pd-L1
Length = 222
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 15/160 (9%)
Query: 100 LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE 159
TVT P + +++G CK+ + L ++ QF E
Sbjct: 2 FTVTVP------KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEE 55
Query: 160 GNPVKTISWMKDGKPVPDH---NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 216
V+ S+ + + + D +I V+ +D G+Y+C+I S + ++
Sbjct: 56 DLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMI-----SYGGADYKRIT 110
Query: 217 GRFDPPVIKESFSDETLNP-GPNYYFKCIASGNPTPEISW 255
+ + P K + ++P + C A G P E+ W
Sbjct: 111 VKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIW 150
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 45 FKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETV-LTVT 103
K S R+ A L D++ + L I + K++D+G Y C++ S GG + + + V
Sbjct: 57 LKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMI--SYGGADYKRITVKVN 114
Query: 104 AP 105
AP
Sbjct: 115 AP 116
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKE 191
P Q + G + K G T +WMK K + + N I + R+E
Sbjct: 14 PEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQE 73
Query: 192 DKGMYQCVIRNEQESAQASGELKLGGRFDPPV 223
G Y ++ N+ S QA L + + DPP
Sbjct: 74 HCGCYTLLVENKLGSRQAQVNLTVVDKPDPPA 105
>pdb|4FMF|A Chain A, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|B Chain B, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|C Chain C, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|D Chain D, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
Length = 313
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 83/230 (36%), Gaps = 32/230 (13%)
Query: 44 WFKFIEGSSRKVAV-----------PLNDRVKQV-----SGTLIIKEAKVEDSGKYLC-V 86
W K GS + VA+ P +RV+ + GT+ + ++ED G Y+C
Sbjct: 37 WQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEF 96
Query: 87 VNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTI 146
G + LTV A +E T Q + + Q + A G P+V +
Sbjct: 97 ATFPTGNRESQLNLTVMAKPTNWIEGT-QAVLRAKKGQDDKVLVATCTSANGKPPSVVSW 155
Query: 147 DFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQES 206
+ + + NP T++ + + VP R+ + C++ +
Sbjct: 156 ETRLKGEAEYQEIRNPNGTVTVISRYRLVPS-----------REAHQQSLACIVNYHMDR 204
Query: 207 AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISW 255
+ S L L +++P V E F + C A N P E W
Sbjct: 205 FKES--LTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHW 252
>pdb|3U82|B Chain B, Binding Of Herpes Simplex Virus Glycoprotein D To Nectin-1
Exploits Host Cell Adhesion
Length = 317
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 83/230 (36%), Gaps = 32/230 (13%)
Query: 44 WFKFIEGSSRKVAV-----------PLNDRVKQV-----SGTLIIKEAKVEDSGKYLC-V 86
W K GS + VA+ P +RV+ + GT+ + ++ED G Y+C
Sbjct: 38 WQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEF 97
Query: 87 VNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTI 146
G + LTV A +E T Q + + Q + A G P+V +
Sbjct: 98 ATFPTGNRESQLNLTVMAKPTNWIEGT-QAVLRAKKGQDDKVLVATCTSANGKPPSVVSW 156
Query: 147 DFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQES 206
+ + + NP T++ + + VP R+ + C++ +
Sbjct: 157 ETRLKGEAEYQEIRNPNGTVTVISRYRLVPS-----------REAHQQSLACIVNYHMDR 205
Query: 207 AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISW 255
+ S L L +++P V E F + C A N P E W
Sbjct: 206 FKES--LTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHW 253
>pdb|3ALP|A Chain A, Cell Adhesion Protein
pdb|3ALP|B Chain B, Cell Adhesion Protein
pdb|3U83|A Chain A, Crystal Structure Of Nectin-1
Length = 331
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 83/230 (36%), Gaps = 32/230 (13%)
Query: 44 WFKFIEGSSRKVAV-----------PLNDRVKQV-----SGTLIIKEAKVEDSGKYLC-V 86
W K GS + VA+ P +RV+ + GT+ + ++ED G Y+C
Sbjct: 52 WQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEF 111
Query: 87 VNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTI 146
G + LTV A +E T Q + + Q + A G P+V +
Sbjct: 112 ATFPTGNRESQLNLTVMAKPTNWIEGT-QAVLRAKKGQDDKVLVATCTSANGKPPSVVSW 170
Query: 147 DFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQES 206
+ + + NP T++ + + VP R+ + C++ +
Sbjct: 171 ETRLKGEAEYQEIRNPNGTVTVISRYRLVPS-----------REAHQQSLACIVNYHMDR 219
Query: 207 AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISW 255
+ S L L +++P V E F + C A N P E W
Sbjct: 220 FKES--LTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHW 267
>pdb|3S5L|G Chain G, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S5L|H Chain H, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
Length = 191
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 20/80 (25%)
Query: 30 GESFALLCEAQENMWFKFIEGSSRKVAV-------------PLNDRV-------KQVSGT 69
G++ L C A + +F +S ++ + LNDR +Q +
Sbjct: 13 GDTVELTCTASQKKSIQFHWKNSNQIKILGNYGSFLWKGPSKLNDRADSRRRLWRQGNFP 72
Query: 70 LIIKEAKVEDSGKYLCVVNN 89
LIIK K+EDS Y+C V +
Sbjct: 73 LIIKNLKIEDSDTYICEVED 92
>pdb|2PET|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2.
pdb|2PF6|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
pdb|2PF6|B Chain B, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
Length = 231
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 246 SGNPTPEISWYLDGKKL 262
+GNP P+I+WY +G++L
Sbjct: 145 NGNPAPKITWYRNGQRL 161
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 166 ISWMKDGKPVP-DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI 224
+++ KD PV + E V + D E K + + V+R +A A E+ + PV
Sbjct: 289 MNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEM-IVLHLPSPVT 347
Query: 225 KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 263
+++ E L GP CIA N P+ L K+V
Sbjct: 348 AQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMV 386
>pdb|2NW2|A Chain A, Crystal Structure Of Els4 Tcr At 1.4a
Length = 200
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 70 LIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
L++KE +++DS YLC V S GG + T T+ + V P +Q D
Sbjct: 72 LLLKELQMKDSASYLCAVQAS-GGSYIPTFGRGTSLI---VHPYIQNPD 116
>pdb|3SKU|E Chain E, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|D Chain D, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|F Chain F, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
Length = 319
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 83/230 (36%), Gaps = 32/230 (13%)
Query: 44 WFKFIEGSSRKVAV-----------PLNDRVKQV-----SGTLIIKEAKVEDSGKYLC-V 86
W K GS + VA+ P +RV+ + GT+ + ++ED G Y+C
Sbjct: 37 WQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEF 96
Query: 87 VNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTI 146
G + LTV A +E T Q + + Q + A G P+V +
Sbjct: 97 ATFPTGNRESQLNLTVMAKPTNWIEGT-QAVLRAKKGQDDKVLVATCTSANGKPPSVVSW 155
Query: 147 DFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQES 206
+ + + NP T++ + + VP R+ + C++ +
Sbjct: 156 ETRLKGEAEYQEIRNPNGTVTVISRYRLVPS-----------REAHQQSLACIVNYHMDR 204
Query: 207 AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISW 255
+ S L L +++P V E F + C A N P E W
Sbjct: 205 FKES--LTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHW 252
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 166 ISWMKDGKPVP-DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI 224
+++ KD PV + E V + D E K + + V+R +A A E+ + PV
Sbjct: 289 MNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEM-IVLHLPSPVT 347
Query: 225 KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 263
+++ E L GP CIA N P+ L K+V
Sbjct: 348 AQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMV 386
>pdb|2NX5|D Chain D, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|I Chain I, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|N Chain N, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|T Chain T, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
Length = 188
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 70 LIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
L++KE +++DS YLC V S GG + T T+ + V P +Q D
Sbjct: 72 LLLKELQMKDSASYLCAVQAS-GGSYIPTFGRGTSLI---VHPYIQNPD 116
>pdb|1PY9|A Chain A, The Crystal Structure Of An Autoantigen In Multiple
Sclerosis
Length = 116
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
RI +VR D+G Y C R+ +A+ ELK+
Sbjct: 81 TLRIQNVRFSDEGGYTCFFRDHSYQEEAAMELKV 114
>pdb|3SO5|A Chain A, Crystal Structure Of An Immunoglobulin I-Set Domain Of
Lrig3 Protein (Lrig3) From Mus Musculus At 1.70 A
Resolution
pdb|3SO5|B Chain B, Crystal Structure Of An Immunoglobulin I-Set Domain Of
Lrig3 Protein (Lrig3) From Mus Musculus At 1.70 A
Resolution
Length = 112
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 19/84 (22%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVK--TISWMKDGKPVPDHNE---------------- 180
V+P Q+ G FTC + T +W D + + D
Sbjct: 15 VQPETQSAIXGSDVSFTCSAASSSDSPXTFAWXXDNEALQDAEXENYAHLRAQGGELXEY 74
Query: 181 -PVFRIDSVRKEDKGMYQCVIRNE 203
+ R+ +V +G YQCVI N
Sbjct: 75 TTILRLRNVEFTSEGXYQCVISNH 98
>pdb|3QJH|A Chain A, The Crystal Structure Of The 5c.C7 Tcr
pdb|3QJH|C Chain C, The Crystal Structure Of The 5c.C7 Tcr
Length = 205
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 64 KQVSGTLIIKEAKVEDSGKYLCVV 87
K+ TL I++A++EDSG Y C
Sbjct: 68 KERYSTLHIRDAQLEDSGTYFCAA 91
>pdb|3CSP|A Chain A, Crystal Structure Of The Dm2 Mutant Of Myelin
Oligodendrocyte Glycoprotein
Length = 139
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
RI +VR D+G Y C R+ + +A+ ELK+
Sbjct: 86 ALRIQNVRFSDEGGYTCFFRDAEYQEEAAVELKV 119
>pdb|2F53|D Chain D, Directed Evolution Of Human T-Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Apparent Cross-Reactivity
Length = 193
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 22/110 (20%)
Query: 28 PGGESFALLCEAQEN-----MWFKFI--EGSSRKVAVP----------LNDRVKQVSG-- 68
P GE+ L C ++ WF+ +G + + +P LN + + SG
Sbjct: 15 PEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIPFWQREQTSGRLNASLDKSSGRS 74
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
TL I ++ DS YLC V + GG + T T+ + V P +Q D
Sbjct: 75 TLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLI---VHPYIQNPD 121
>pdb|1PKO|A Chain A, Myelin Oligodendrocyte Glycoprotein (Mog)
Length = 139
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
RI +VR D+G Y C R+ +A+ ELK+
Sbjct: 86 ALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 119
>pdb|1PKQ|E Chain E, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
pdb|1PKQ|J Chain J, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
Length = 139
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
RI +VR D+G Y C R+ +A+ ELK+
Sbjct: 86 ALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 119
>pdb|2CKN|A Chain A, Nmr Structure Of The First Ig Module Of Mouse Fgfr1
Length = 95
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 130 EISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN------EPVF 183
E + P VE + G Q C+ + V++I+W++DG + + N E V
Sbjct: 5 EQAQPWGVPVEVESLLVHPGDLLQLRCRLRDD-VQSINWLRDGVQLVESNRTRITGEEVE 63
Query: 184 RIDSVRKEDKGMYQCV 199
DS+ D G+Y CV
Sbjct: 64 VRDSI-PADSGLYACV 78
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 104 APLAAGVEPTVQTIDFGRPAQFTCKYEISP---PLAAGVE--PTVQTIDFGRPAQFTCKY 158
A + VE VQ +DF A CK I+P LAA E + +D KY
Sbjct: 11 ADFDSKVESGVQLVDFWATACGPCKM-IAPVLEELAADYEGKADILKLDVDENPSTAAKY 69
Query: 159 EGNPVKTISWMKDGKPV 175
E + T+ KDG+PV
Sbjct: 70 EVMSIPTLIVFKDGQPV 86
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain From
Human Cdna
Length = 113
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 70 LIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
L++ ++EDSG+YLC +++ ES +TVT P
Sbjct: 70 LVLPAVQLEDSGEYLCEIDD----ESASFTVTVTEP 101
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 236 GPNYYFKCIASGNPTPEISWYLDGK 260
G + C A G+P PEI W+ +G+
Sbjct: 36 GGSVELHCEAVGSPVPEIQWWFEGQ 60
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 22/85 (25%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD----------------------H 178
P Q G + C+ G+PV I W +G+ D H
Sbjct: 28 PLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQH 87
Query: 179 NEPVFRIDSVRKEDKGMYQCVIRNE 203
ID++ +ED G Y+C N+
Sbjct: 88 AASTISIDTLVEEDTGTYECRASND 112
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 227 SFSDETLNPGPNYYFKCIASGNPTPEISWYL-DGKKLVNAER 267
S S L+ G + +F C A G P I WY G+K+++ +R
Sbjct: 6 SLSKVELSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQR 46
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 236 GPNYYFKCIASGNPTPEISWYLDGK 260
G + C A G+P PEI W+ +G+
Sbjct: 36 GGSVELHCEAVGSPVPEIQWWFEGQ 60
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 22/85 (25%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD----------------------H 178
P Q G + C+ G+PV I W +G+ D H
Sbjct: 28 PLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQH 87
Query: 179 NEPVFRIDSVRKEDKGMYQCVIRNE 203
ID++ +ED G Y+C N+
Sbjct: 88 AASTISIDTLVEEDTGTYECRASND 112
>pdb|1CDI|A Chain A, Structures Of An Hiv And Mhc Binding Fragment From Human
Cd4 As Refined In Two Crystal Lattices
Length = 179
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 20/80 (25%)
Query: 30 GESFALLCEAQENMWFKFIEGSSRKVAV-------------PLNDRVK-------QVSGT 69
G++ L C A + +F +S ++ + LNDR Q +
Sbjct: 10 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69
Query: 70 LIIKEAKVEDSGKYLCVVNN 89
LIIK K+EDS Y+C V +
Sbjct: 70 LIIKNLKIEDSDTYICEVED 89
>pdb|1JL4|D Chain D, Crystal Structure Of The Human Cd4 N-Terminal Two Domain
Fragment Complexed To A Class Ii Mhc Molecule
pdb|1CDH|A Chain A, Structures Of An Hiv And Mhc Binding Fragment From Human
Cd4 As Refined In Two Crystal Lattices
pdb|1CDJ|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4
Length = 178
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 20/80 (25%)
Query: 30 GESFALLCEAQENMWFKFIEGSSRKVAV-------------PLNDRVK-------QVSGT 69
G++ L C A + +F +S ++ + LNDR Q +
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 70 LIIKEAKVEDSGKYLCVVNN 89
LIIK K+EDS Y+C V +
Sbjct: 69 LIIKNLKIEDSDTYICEVED 88
>pdb|2NXY|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein(S334a) Complexed With
Cd4 And Antibody 17b
pdb|2NXZ|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (t257s, S334a, S375w)
Complexed With Cd4 And Antibody 17b
pdb|2NY0|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (M95w, W96c, T257s,
V275c, S334a, S375w, A433m) Complexed With Cd4 And
Antibody 17b
pdb|2NY1|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (I109c, T257s, S334a,
S375w, Q428c) Complexed With Cd4 And Antibody 17b
pdb|2NY2|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (T123c, T257s, S334a,
S375w, G431c) Complexed With Cd4 And Antibody 17b
pdb|2NY3|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (K231c, T257s, E267c,
S334a, S375w) Complexed With Cd4 And Antibody 17b
pdb|2NY4|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (K231c, T257s, E268c,
S334a, S375w) Complexed With Cd4 And Antibody 17b
pdb|2NY5|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein (m95w, W96c, I109c,
T257s, V275c, S334a, S375w, Q428c, A433m) Complexed
With Cd4 And Antibody 17b
pdb|2NY6|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (m95w, W96c, I109c,
T123c, T257s, V275c,s334a, S375w, Q428c, G431c)
Complexed With Cd4 And Antibody 17b
pdb|3JWD|C Chain C, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
pdb|3JWD|D Chain D, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
pdb|3JWO|C Chain C, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
Length = 184
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 20/80 (25%)
Query: 30 GESFALLCEAQENMWFKFIEGSSRKVAV-------------PLNDRVK-------QVSGT 69
G++ L C A + +F +S ++ + LNDR Q +
Sbjct: 10 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69
Query: 70 LIIKEAKVEDSGKYLCVVNN 89
LIIK K+EDS Y+C V +
Sbjct: 70 LIIKNLKIEDSDTYICEVED 89
>pdb|2B4C|C Chain C, Crystal Structure Of Hiv-1 Jr-fl Gp120 Core Protein
Containing The Third Variable Region (v3) Complexed
With Cd4 And The X5 Antibody
pdb|2QAD|B Chain B, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
pdb|2QAD|F Chain F, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
Length = 181
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 20/80 (25%)
Query: 30 GESFALLCEAQENMWFKFIEGSSRKVAV-------------PLNDRVK-------QVSGT 69
G++ L C A + +F +S ++ + LNDR Q +
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 70 LIIKEAKVEDSGKYLCVVNN 89
LIIK K+EDS Y+C V +
Sbjct: 69 LIIKNLKIEDSDTYICEVED 88
>pdb|3LQA|C Chain C, Crystal Structure Of Clade C Gp120 In Complex With Scd4
And
Length = 192
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 20/80 (25%)
Query: 30 GESFALLCEAQENMWFKFIEGSSRKVAV-------------PLNDRVK-------QVSGT 69
G++ L C A + +F +S ++ + LNDR Q +
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 70 LIIKEAKVEDSGKYLCVVNN 89
LIIK K+EDS Y+C V +
Sbjct: 69 LIIKNLKIEDSDTYICEVED 88
>pdb|1CDY|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4 Mutant With
Gly 47 Replaced By Ser
Length = 178
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 20/80 (25%)
Query: 30 GESFALLCEAQENMWFKFIEGSSRKVAV-------------PLNDRVK-------QVSGT 69
G++ L C A + +F +S ++ + LNDR Q +
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKSPSKLNDRADSRRSLWDQGNFP 68
Query: 70 LIIKEAKVEDSGKYLCVVNN 89
LIIK K+EDS Y+C V +
Sbjct: 69 LIIKNLKIEDSDTYICEVED 88
>pdb|3O2D|A Chain A, Crystal Structure Of Hiv-1 Primary Receptor Cd4 In
Complex With A Potent Antiviral Antibody
Length = 188
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 20/80 (25%)
Query: 30 GESFALLCEAQENMWFKFIEGSSRKVAV-------------PLNDRVK-------QVSGT 69
G++ L C A + +F +S ++ + LNDR Q +
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 70 LIIKEAKVEDSGKYLCVVNN 89
LIIK K+EDS Y+C V +
Sbjct: 69 LIIKNLKIEDSDTYICEVED 88
>pdb|3CD4|A Chain A, Refinement And Analysis Of The First Two Domains Of
Human Cd4
Length = 182
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 20/80 (25%)
Query: 30 GESFALLCEAQENMWFKFIEGSSRKVAV-------------PLNDRVK-------QVSGT 69
G++ L C A + +F +S ++ + LNDR Q +
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 70 LIIKEAKVEDSGKYLCVVNN 89
LIIK K+EDS Y+C V +
Sbjct: 69 LIIKNLKIEDSDTYICEVED 88
>pdb|1CDU|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4 Mutant With
Phe 43 Replaced By Val
Length = 178
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 20/80 (25%)
Query: 30 GESFALLCEAQENMWFKFIEGSSRKVAV-------------PLNDRVK-------QVSGT 69
G++ L C A + +F +S ++ + LNDR Q +
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSVLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 70 LIIKEAKVEDSGKYLCVVNN 89
LIIK K+EDS Y+C V +
Sbjct: 69 LIIKNLKIEDSDTYICEVED 88
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 20 SDIIRFKKPGGESFALLCEAQ--ENMWFKFIEGSSRKVAVPLN----DRVKQVSGTLIIK 73
S ++R + GE+ ++C A E + ++ K+ +PLN D + L +
Sbjct: 194 SKLVRIR---GEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLN 250
Query: 74 EAKVEDSGKYLCVVNNSVGGES 95
+D+G Y CV +N VG +
Sbjct: 251 AVDFQDAGIYSCVASNDVGTRT 272
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 20 SDIIRFKKPGGESFALLCEAQ--ENMWFKFIEGSSRKVAVPLN----DRVKQVSGTLIIK 73
S ++R + GE+ ++C A E + ++ K+ +PLN D + L +
Sbjct: 194 SKLVRIR---GEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLN 250
Query: 74 EAKVEDSGKYLCVVNNSVGGES 95
+D+G Y CV +N VG +
Sbjct: 251 AVDFQDAGIYSCVASNDVGTRT 272
>pdb|1GC1|C Chain C, Hiv-1 Gp120 Core Complexed With Cd4 And A Neutralizing
Human Antibody
pdb|1G9M|C Chain C, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein Complexed With
Cd4 And Induced Neutralizing Antibody 17b
pdb|1G9N|C Chain C, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1RZJ|C Chain C, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein Complexed With
Cd4 And Induced Neutralizing Antibody 17b
pdb|1RZK|C Chain C, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
Length = 185
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 20/80 (25%)
Query: 30 GESFALLCEAQENMWFKFIEGSSRKVAV-------------PLNDRVK-------QVSGT 69
G++ L C A + +F +S ++ + LNDR Q +
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 70 LIIKEAKVEDSGKYLCVVNN 89
LIIK K+EDS Y+C V +
Sbjct: 69 LIIKNLKIEDSDTYICEVED 88
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 178 HNEPVFRIDSVRKEDKGMYQCVIRNEQES 206
HN+ + V+K D+G+Y C IR + ES
Sbjct: 81 HNDGSLLLQDVQKADEGIYTCEIRLKNES 109
>pdb|2GV1|A Chain A, Nmr Solution Structure Of The Acylphosphatase From
Eschaerichia Coli
Length = 92
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 106 LAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKT 165
+ A V VQ + F ++T +YE G+ + +D G C EG K
Sbjct: 6 IIAWVYGRVQGVGF----RYTTQYEAKR---LGLTGYAKNLDDGSVEVVACGEEGQVEKL 58
Query: 166 ISWMKDGKPVPDHNEPVF 183
+ W+K G P E V
Sbjct: 59 MQWLKSGGPRSARVERVL 76
>pdb|1VER|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 111
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 27 KPGGESFALLCEAQE-------NMWFKFIEGSSRKVAVPLNDRVKQV------SGTLIIK 73
K GES + C ++ W++ GS+ + + + R + S +L I+
Sbjct: 12 KETGESLTINCVLRDASYGLESTGWYRTKLGSTNEQTISIGGRYVETVNKGSKSFSLRIR 71
Query: 74 EAKVEDSGKYLC 85
+ +VEDSG Y C
Sbjct: 72 DLRVEDSGTYKC 83
>pdb|3S4S|G Chain G, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S4S|H Chain H, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
Length = 191
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 20/80 (25%)
Query: 30 GESFALLCEAQENMWFKFIEGSSRKVAV-------------PLNDRVK-------QVSGT 69
G++ L C A + +F +S ++ + LNDR Q +
Sbjct: 13 GDTVELTCTASQKKSIQFHWKNSNQIKILGNYGSFLWKGPSKLNDRADSRRSLWDQGNFP 72
Query: 70 LIIKEAKVEDSGKYLCVVNN 89
LIIK K+EDS Y+C V +
Sbjct: 73 LIIKNLKIEDSDTYICEVED 92
>pdb|3KGR|A Chain A, Crystal Structure Of The Human Leukocyte-Associated
Ig-Like Receptor-1 (Lair-1)
pdb|3KGR|B Chain B, Crystal Structure Of The Human Leukocyte-Associated
Ig-Like Receptor-1 (Lair-1)
pdb|3KGR|C Chain C, Crystal Structure Of The Human Leukocyte-Associated
Ig-Like Receptor-1 (Lair-1)
Length = 106
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 176 PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
P +E FRIDSV + + G Y+C+ + ++ S L+L
Sbjct: 60 PSESEARFRIDSVSEGNAGPYRCIYYKPPKWSEQSDYLEL 99
>pdb|3RP1|A Chain A, Crystal Structure Of Human Lair-1 In C2 Space Group
pdb|3RP1|B Chain B, Crystal Structure Of Human Lair-1 In C2 Space Group
pdb|3RP1|C Chain C, Crystal Structure Of Human Lair-1 In C2 Space Group
pdb|3RP1|D Chain D, Crystal Structure Of Human Lair-1 In C2 Space Group
Length = 103
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 176 PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
P +E FRIDSV + + G Y+C+ + ++ S L+L
Sbjct: 59 PSESEARFRIDSVSEGNAGPYRCIYYKPPKWSEQSDYLEL 98
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 236 GPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
G KC+ G P P + W G++L +ER
Sbjct: 29 GAEAELKCVVLGEPPPVVVWEKGGQQLAASER 60
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 60 NDRVKQVSGT--LIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTI 117
N++ V GT L++ + +ED+G Y CV+ + G+ ++ + E T+ I
Sbjct: 170 NEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVI 229
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 104 APLAAGVEPTVQTIDFGRPAQFTCKYEISP---PLAAGVE--PTVQTIDFGRPAQFTCKY 158
A + VE VQ +DF +CK I+P LAA E + +D KY
Sbjct: 11 ADFDSKVESGVQLVDFWATWCGSCKM-IAPVLEELAADYEGKADILKLDVDENPSTAAKY 69
Query: 159 EGNPVKTISWMKDGKPV 175
E + T+ KDG+PV
Sbjct: 70 EVMSIPTLIVFKDGQPV 86
>pdb|1WIO|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Tetragonal
Crystal Form
pdb|1WIO|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Tetragonal
Crystal Form
pdb|1WIP|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Monoclinic
Crystal Form
pdb|1WIP|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Monoclinic
Crystal Form
pdb|1WIQ|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Trigonal
Crystal Form
pdb|1WIQ|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Trigonal
Crystal Form
Length = 363
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 20/80 (25%)
Query: 30 GESFALLCEAQENMWFKFIEGSSRKVAV-------------PLNDRVK-------QVSGT 69
G++ L C A + +F +S ++ + LNDR Q +
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 70 LIIKEAKVEDSGKYLCVVNN 89
LIIK K+EDS Y+C V +
Sbjct: 69 LIIKNLKIEDSDTYICEVED 88
>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
pdb|4HWU|B Chain B, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
Length = 95
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 30 GESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNN 89
GES L C ++ I + V + N+R + L IK A DSG Y C
Sbjct: 16 GESLELQCMLKDA---AVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYACTAAR 72
Query: 90 SVGGESVETVLTVT 103
+V E+ ++ VT
Sbjct: 73 TVDSETWIFMVNVT 86
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 236 GPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
G KC+ G P P + W G++L +ER
Sbjct: 29 GAEAELKCVVLGEPPPVVVWEKGGQQLAASER 60
>pdb|3T0E|E Chain E, Crystal Structure Of A Complete Ternary Complex Of T
Cell Receptor, Peptide-Mhc And Cd4
Length = 373
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 20/80 (25%)
Query: 30 GESFALLCEAQENMWFKFIEGSSRKVAV-------------PLNDRVK-------QVSGT 69
G++ L C A + +F +S ++ + LNDR Q +
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNYGSFLWKGPSKLNDRADSRRSLWDQGNFP 68
Query: 70 LIIKEAKVEDSGKYLCVVNN 89
LIIK K+EDS Y+C V +
Sbjct: 69 LIIKNLKIEDSDTYICEVED 88
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 93 GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISP---PLAAGVE--PTVQTID 147
G + V A + VE VQ +DF CK I+P LAA E + +D
Sbjct: 1 GSHMAIVKVTDADFDSKVESGVQLVDFWATWCGPCKM-IAPVLEELAADYEGKADILKLD 59
Query: 148 FGRPAQFTCKYEGNPVKTISWMKDGKPV 175
KYE + T+ KDG+PV
Sbjct: 60 VDENPSTAAKYEVMSIPTLIVFKDGQPV 87
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 236 GPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
G KC+ G P P + W G++L +ER
Sbjct: 28 GAEAELKCVVLGEPPPVVVWEKGGQQLAASER 59
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 19/75 (25%)
Query: 190 KEDKGMYQCVIRN-EQESAQASGELKLGGRFDPPVIKESFSDETLNPGP--------NYY 240
+ D+G Y+C + S QA L++ PP+ +LNPGP
Sbjct: 88 QADEGEYECRVSTFPAGSFQARLRLRV---LVPPL-------PSLNPGPALEEGQGLTLA 137
Query: 241 FKCIASGNPTPEISW 255
C A G+P P ++W
Sbjct: 138 ASCTAEGSPAPSVTW 152
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 86 VVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQ 124
++ S+GG + T++ +P + T T+DFGR A+
Sbjct: 293 ILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAK 331
>pdb|1MLB|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme
pdb|1MLC|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
pdb|1MLC|C Chain C, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
Length = 214
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 22/113 (19%)
Query: 30 GESFALLCEAQENM-----WF------------KFIEGSSRKVAVPLNDRVKQVSGTLII 72
G+S +L C A +++ W+ K++ SS + + TL I
Sbjct: 16 GDSVSLSCRASQSISNNLHWYQQKSHESPRLLIKYVSQSSSGIPSRFSGSGSGTDFTLSI 75
Query: 73 KEAKVEDSGKYLCVVNNSV-----GGESVETVLTVTAPLAAGVEPTVQTIDFG 120
+ ED G Y C +NS GG +E AP + P+ + + G
Sbjct: 76 NSVETEDFGMYFCQQSNSWPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSG 128
>pdb|2YZ8|A Chain A, Crystal Structure Of The 32th Ig-Like Domain Of Human
Obscurin (Kiaa1556)
Length = 103
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 70 LIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104
L+++ + +DSG+Y C S G ++ LTVTA
Sbjct: 65 LVVRNLRPQDSGRYSC----SFGDQTTSATLTVTA 95
>pdb|2E7B|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Kiaa1556
Length = 103
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 70 LIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104
L+++ + +DSG+Y C S G ++ LTVTA
Sbjct: 65 LVVRNLRPQDSGRYSC----SFGDQTTSATLTVTA 95
>pdb|1HXM|B Chain B, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|D Chain D, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|F Chain F, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|H Chain H, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
Length = 242
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 175 VPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLN 234
+P+ + I +V K+D Y C + Q+ + ++K+ G +I + D ++
Sbjct: 74 IPETSTSTLTIHNVEKQDIATYYCALWEAQQ--ELGKKIKVFGPGTKLIITDKQLDADVS 131
Query: 235 PGPNYYFKCIA 245
P P + IA
Sbjct: 132 PKPTIFLPSIA 142
>pdb|1JBJ|A Chain A, Cd3 Epsilon And Gamma Ectodomain Fragment Complex In
Single- Chain Construct
Length = 186
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 154 FTCKYEGNPVKTISWMKDGKPVPDHN--EPVFRIDSVRKEDKGMYQC 198
TC G KTI W+KDG + N + + + + K+ +G YQC
Sbjct: 127 LTC---GLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQC 170
>pdb|2I26|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|P Chain P, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I27|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
pdb|2I27|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
Length = 121
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 27/100 (27%)
Query: 27 KPGGESFALLCEAQEN-------MWFKFIEGSSRKVAVPLNDRVKQV------SGTLIIK 73
K GES + C +++ W++ GS+ + ++ R + S +L I
Sbjct: 12 KETGESLTINCVLRDSNCALSSTYWYRKKSGSTNEESISKGGRYVETVNSGSKSFSLRIN 71
Query: 74 EAKVEDSGKYLC--------------VVNNSVGGESVETV 99
+ VEDSG Y C +N+ GG +V TV
Sbjct: 72 DLTVEDSGTYRCKPESRYGSYDAECAALNDQYGGGTVVTV 111
>pdb|1UWG|L Chain L, Molecular Mechanism Of Enantioselective Proton Transfer To
Carbon In Catalytic Antibody 14d9
pdb|1UWG|X Chain X, Molecular Mechanism Of Enantioselective Proton Transfer To
Carbon In Catalytic Antibody 14d9
Length = 213
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 26/100 (26%)
Query: 30 GESFALLCEAQENM-----WFK----------FIEGSSRKVAVPLNDRVK-QVSGT---L 70
G+ ++ C+A +N+ W++ S R VP DR SGT L
Sbjct: 16 GDRVSVTCKASQNVGTHVAWYQQKPGQSPKTLIYSASYRYSGVP--DRFTGSGSGTDFTL 73
Query: 71 IIKEAKVEDSGKYLCVVNNSV-----GGESVETVLTVTAP 105
I++ + ED+ +Y C N GG +E TV AP
Sbjct: 74 TIRDVQSEDAAEYFCQQYNLFPVTFGGGTKLEIKRTVAAP 113
>pdb|2PTT|B Chain B, Structure Of Nk Cell Receptor 2b4 (Cd244) Bound To Its
Ligand Cd48
pdb|2PTU|A Chain A, Structure Of Nk Cell Receptor 2b4 (Cd244)
pdb|2PTU|B Chain B, Structure Of Nk Cell Receptor 2b4 (Cd244)
pdb|2PTU|C Chain C, Structure Of Nk Cell Receptor 2b4 (Cd244)
pdb|2PTU|D Chain D, Structure Of Nk Cell Receptor 2b4 (Cd244)
Length = 112
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 70 LIIKEAKVEDSGKYLCVVNNSVG 92
L IK AK++DSG YL + N+ G
Sbjct: 77 LSIKSAKLQDSGHYLLEITNTGG 99
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 93 GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISP---PLAAGVE--PTVQTID 147
G + V A + VE VQ +DF T K I+P LAA E + +D
Sbjct: 1 GSHMAIVKVTDADFDSKVESGVQLVDFWATWCGTSKM-IAPVLEELAADYEGKADILKLD 59
Query: 148 FGRPAQFTCKYEGNPVKTISWMKDGKPV 175
KYE + T+ KDG+PV
Sbjct: 60 VDENPSTAAKYEVMSIPTLIVFKDGQPV 87
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
Length = 104
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 20/93 (21%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKD-----------GKPVPDHNEPV------ 182
EP V+ I P + +C Y G + W D K + + V
Sbjct: 10 EPEVR-IPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTG 68
Query: 183 FRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
SV +ED G Y C++ +E + GE+K+
Sbjct: 69 ITFKSVTREDTGTYTCMV--SEEGGNSYGEVKV 99
>pdb|1Z2K|A Chain A, Nmr Structure Of The D1 Domain Of The Natural Killer
Cell Receptor, 2b4
Length = 109
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 70 LIIKEAKVEDSGKYLCVVNNSVG 92
L IK AK++DSG YL + N+ G
Sbjct: 74 LSIKSAKLQDSGHYLLEITNTGG 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,859,763
Number of Sequences: 62578
Number of extensions: 391360
Number of successful extensions: 1721
Number of sequences better than 100.0: 228
Number of HSP's better than 100.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 1057
Number of HSP's gapped (non-prelim): 577
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)